BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046351
(468 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8M9T2|YCF1_CHAGL Putative membrane protein ycf1 OS=Chaetosphaeridium globosum GN=ycf1
PE=3 SV=1
Length = 1450
Score = 33.5 bits (75), Expect = 3.8, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 226 KDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQYHWRNRNYKNF 285
+ +IDV +K K+ + +++ P+ N W KL + +I +Q +W+ ++Y N+
Sbjct: 1085 QTNIIDVNPENIKAQDFKNLLENIYTFTPTINLWDKLSTNNW--KISVQNNWKQKSYNNY 1142
Query: 286 D 286
D
Sbjct: 1143 D 1143
>sp|Q2TLZ3|MACOI_BOVIN Macoilin OS=Bos taurus GN=TMEM57 PE=2 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 204 FQCCVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKL 262
+ C+P ++ P L+R IK D+ S + +S++SSL T
Sbjct: 368 MENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST---------- 417
Query: 263 GEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
E+G +G Q N +N + MKQ ++NI Q KK+ A+
Sbjct: 418 -ERGIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAE 463
>sp|Q2TLZ2|MACOI_PIG Macoilin OS=Sus scrofa GN=TMEM57 PE=2 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 204 FQCCVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKL 262
+ C+P ++ P L+R IK D+ S + +S++SSL T
Sbjct: 368 MENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST---------- 417
Query: 263 GEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
E+G +G Q N +N + MKQ ++NI Q KK+ A+
Sbjct: 418 -ERGIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAE 463
>sp|Q2TLZ5|MACOI_PANTR Macoilin OS=Pan troglodytes GN=TMEM57 PE=2 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 204 FQCCVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKL 262
+ C+P ++ P L+R IK D+ S + +S++SSL T
Sbjct: 368 MENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST---------- 417
Query: 263 GEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
E+G +G Q N +N + MKQ ++NI Q KK+ A+
Sbjct: 418 -ERGIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAE 463
>sp|Q8N5G2|MACOI_HUMAN Macoilin OS=Homo sapiens GN=TMEM57 PE=1 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 204 FQCCVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKL 262
+ C+P ++ P L+R IK D+ S + +S++SSL T
Sbjct: 368 MENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST---------- 417
Query: 263 GEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
E+G +G Q N +N + MKQ ++NI Q KK+ A+
Sbjct: 418 -ERGIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAE 463
>sp|Q2TLZ1|MACOI_CANFA Macoilin OS=Canis familiaris GN=TMEM57 PE=2 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 204 FQCCVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKL 262
+ C+P ++ P L+R IK D+ S + +S++SSL T
Sbjct: 368 MENCIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST---------- 417
Query: 263 GEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
E+G +G Q N +N + MKQ ++NI Q KK+ A+
Sbjct: 418 -ERGIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKKLKAE 463
>sp|Q4V7D3|MACOI_RAT Macoilin OS=Rattus norvegicus GN=Tmem57 PE=2 SV=1
Length = 664
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 207 CVPFTPVTGPRILLR-NTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEK 265
C+P ++ P L+R IK D+ S + +S++SSL T E+
Sbjct: 371 CIPNNQLSKPDALVRLEQDIKKLKADLQASRQVEQELRSQISSLSST-----------ER 419
Query: 266 GFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ 310
G +G Q N +N + MKQ ++NI Q K++ A+
Sbjct: 420 GIRSEMG-QLRQENELLQNKLHNAVQMKQKDKQNISQLEKRLKAE 463
>sp|Q9CG78|XERS_LACLA Tyrosine recombinase XerS OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=xerS PE=3 SV=1
Length = 356
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 279 NRNYKNFDEFLMDMKQNKRKNIRQERKKISAQ--NLTMKRLRGHEIKAKHWDSFYRFYKN 336
N ++ + F++ +++ R N R R +S N T+ L S Y++
Sbjct: 73 NLTKRDLESFILYLRERPRLNTRSTRYGVSQTTINRTLSAL----------SSLYKYLTE 122
Query: 337 TTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAED-------GDELVAGALNLIGGD 385
+N+ G PY R+ + +K K + L AE+ GDE G L+ I +
Sbjct: 123 EVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGKLFLGDE-TQGFLDYIDNE 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,946,292
Number of Sequences: 539616
Number of extensions: 7430168
Number of successful extensions: 16862
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 16860
Number of HSP's gapped (non-prelim): 26
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)