Query 046351
Match_columns 468
No_of_seqs 148 out of 998
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3146 Uncharacterized protei 100.0 1.6E-79 3.4E-84 588.5 18.0 364 97-467 5-368 (387)
2 PF04339 DUF482: Protein of un 100.0 2.6E-77 5.7E-82 603.6 20.0 353 107-467 1-353 (370)
3 TIGR03019 pepcterm_femAB FemAB 100.0 3.3E-34 7.1E-39 290.6 17.0 278 114-449 1-286 (330)
4 PF02388 FemAB: FemAB family; 99.9 2E-24 4.4E-29 224.2 12.9 299 111-459 1-402 (406)
5 COG5653 Protein involved in ce 99.7 2.4E-16 5.2E-21 157.8 10.9 314 81-439 8-348 (406)
6 PF13480 Acetyltransf_6: Acety 99.7 7.2E-17 1.6E-21 142.0 5.8 134 294-433 1-141 (142)
7 COG2348 Peptidoglycan interpep 99.6 2.4E-15 5.2E-20 153.5 11.6 295 110-455 5-398 (418)
8 COG2898 Uncharacterized conser 98.4 1.1E-06 2.3E-11 93.0 9.2 186 226-429 267-459 (538)
9 PF07395 Mig-14: Mig-14; Inte 98.0 2.4E-06 5.2E-11 82.6 1.5 141 292-443 107-261 (264)
10 PF09924 DUF2156: Uncharacteri 97.9 1.8E-05 3.8E-10 79.3 5.5 186 230-429 57-247 (299)
11 PRK02983 lysS lysyl-tRNA synth 97.8 7.5E-05 1.6E-09 86.6 10.7 190 226-429 293-486 (1094)
12 PRK15312 antimicrobial resista 97.6 1.8E-05 3.9E-10 77.2 1.4 146 291-443 134-293 (298)
13 PF03588 Leu_Phe_trans: Leucyl 96.2 0.011 2.4E-07 54.1 6.1 131 292-442 41-172 (173)
14 PRK01305 arginyl-tRNA-protein 95.9 0.025 5.4E-07 54.7 7.6 128 293-429 82-209 (240)
15 TIGR03827 GNAT_ablB putative b 95.8 0.021 4.5E-07 56.2 6.7 181 230-426 23-222 (266)
16 PRK00301 aat leucyl/phenylalan 94.9 0.1 2.2E-06 50.0 7.7 130 292-443 71-203 (233)
17 TIGR00667 aat leucyl/phenylala 93.4 0.25 5.3E-06 45.7 6.8 128 292-443 43-173 (185)
18 PF04377 ATE_C: Arginine-tRNA- 92.7 0.37 8.1E-06 42.1 6.6 114 329-443 5-122 (128)
19 PHA00673 acetyltransferase dom 85.1 1.7 3.7E-05 39.2 5.2 115 324-442 14-145 (154)
20 COG2360 Aat Leu/Phe-tRNA-prote 77.1 7.2 0.00016 36.8 6.3 130 292-443 64-196 (221)
21 PHA00673 acetyltransferase dom 74.2 12 0.00027 33.7 7.0 86 156-268 56-142 (154)
22 TIGR03448 mycothiol_MshD mycot 73.8 43 0.00094 32.8 11.6 128 310-443 148-288 (292)
23 COG2935 Putative arginyl-tRNA: 73.1 9.2 0.0002 37.0 6.1 100 329-429 111-216 (253)
24 COG3375 Uncharacterized conser 69.5 13 0.00028 35.5 6.2 104 312-424 3-111 (266)
25 PRK01346 hypothetical protein; 68.9 33 0.00071 35.7 9.9 141 218-384 85-231 (411)
26 PRK10146 aminoalkylphosphonic 66.2 10 0.00022 32.5 4.7 112 324-442 11-137 (144)
27 PF13673 Acetyltransf_10: Acet 64.5 7.1 0.00015 32.1 3.2 60 363-427 44-103 (117)
28 KOG3139 N-acetyltransferase [G 59.9 46 0.001 30.2 7.5 89 152-269 53-143 (165)
29 COG2898 Uncharacterized conser 59.2 19 0.00042 39.0 5.9 130 77-254 320-459 (538)
30 TIGR00124 cit_ly_ligase [citra 58.3 40 0.00087 34.4 7.9 69 227-296 65-135 (332)
31 PF13420 Acetyltransf_4: Acety 57.9 19 0.00041 31.3 4.9 119 324-445 6-141 (155)
32 PRK10975 TDP-fucosamine acetyl 55.6 28 0.00061 32.0 5.8 120 325-445 55-190 (194)
33 TIGR02382 wecD_rffC TDP-D-fuco 53.1 37 0.0008 31.2 6.2 120 324-444 51-186 (191)
34 PF13523 Acetyltransf_8: Acety 52.7 20 0.00043 31.3 4.1 117 324-444 7-142 (152)
35 PF13527 Acetyltransf_9: Acety 52.5 23 0.00049 29.7 4.4 111 323-439 6-125 (127)
36 TIGR03103 trio_acet_GNAT GNAT- 52.4 44 0.00095 36.5 7.5 123 310-446 81-220 (547)
37 PRK03624 putative acetyltransf 49.1 49 0.0011 27.6 6.0 114 324-443 10-130 (140)
38 TIGR01686 FkbH FkbH-like domai 47.7 32 0.0007 34.6 5.2 100 323-427 193-297 (320)
39 PRK07922 N-acetylglutamate syn 46.7 35 0.00076 30.8 4.9 119 311-442 5-126 (169)
40 TIGR01575 rimI ribosomal-prote 46.2 48 0.001 27.3 5.4 117 327-452 2-124 (131)
41 PLN02706 glucosamine 6-phospha 45.6 55 0.0012 28.3 5.8 36 407-442 105-143 (150)
42 PF13527 Acetyltransf_9: Acety 44.5 62 0.0013 26.9 5.9 70 156-251 42-111 (127)
43 PF13673 Acetyltransf_10: Acet 43.5 91 0.002 25.3 6.6 47 219-267 71-117 (117)
44 PRK12308 bifunctional arginino 41.2 32 0.0007 38.1 4.4 120 310-443 462-584 (614)
45 cd04301 NAT_SF N-Acyltransfera 37.5 43 0.00093 22.9 3.2 59 367-426 3-64 (65)
46 COG1247 Sortase and related ac 37.0 43 0.00094 30.7 3.8 141 324-467 9-168 (169)
47 PTZ00330 acetyltransferase; Pr 33.9 1.1E+02 0.0024 25.9 5.9 114 324-442 14-140 (147)
48 PF00765 Autoind_synth: Autoin 31.7 1.2E+02 0.0025 28.1 5.9 101 154-271 44-154 (182)
49 PRK07757 acetyltransferase; Pr 30.3 86 0.0019 27.1 4.6 112 324-443 9-122 (152)
50 PF09301 DUF1970: Domain of un 29.6 17 0.00037 29.1 -0.1 28 17-44 50-77 (117)
51 PRK13834 putative autoinducer 27.5 2.6E+02 0.0056 26.4 7.5 101 154-270 52-163 (207)
52 PRK14545 nucleoside diphosphat 27.3 41 0.00089 29.7 1.9 46 305-362 25-70 (139)
53 PRK10146 aminoalkylphosphonic 26.9 2.2E+02 0.0048 23.9 6.6 52 218-269 82-135 (144)
54 PF13420 Acetyltransf_4: Acety 26.4 3.6E+02 0.0078 23.0 7.9 46 226-271 90-138 (155)
55 PHA01807 hypothetical protein 26.0 82 0.0018 28.2 3.7 65 364-429 54-123 (153)
56 PRK01346 hypothetical protein; 25.3 1.9E+02 0.0041 30.0 6.8 122 311-444 6-137 (411)
57 PRK10975 TDP-fucosamine acetyl 25.1 3.2E+02 0.0069 24.8 7.7 49 221-269 135-185 (194)
58 COG0105 Ndk Nucleoside diphosp 25.0 44 0.00096 29.3 1.6 65 296-372 15-79 (135)
59 TIGR03019 pepcterm_femAB FemAB 24.8 1.8E+02 0.004 29.1 6.4 83 342-427 12-103 (330)
60 PRK14542 nucleoside diphosphat 24.4 48 0.001 29.2 1.8 47 304-362 22-68 (137)
61 PRK14541 nucleoside diphosphat 23.3 56 0.0012 28.9 2.0 44 306-361 24-67 (140)
62 PF00583 Acetyltransf_1: Acety 22.3 1.5E+02 0.0031 22.3 4.1 50 218-267 31-82 (83)
63 PF13508 Acetyltransf_7: Acety 20.8 1.3E+02 0.0028 22.9 3.4 25 364-388 4-28 (79)
64 TIGR03448 mycothiol_MshD mycot 20.2 93 0.002 30.4 3.1 60 323-383 7-66 (292)
65 PRK14543 nucleoside diphosphat 20.2 78 0.0017 29.0 2.3 52 304-362 26-77 (169)
No 1
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.6e-79 Score=588.48 Aligned_cols=364 Identities=47% Similarity=0.923 Sum_probs=353.5
Q ss_pred cceEEEEeeeeccccCcCcccccccCCCCCCCCCcchhhhhhcccccccccccccCccceeeEeecCCCceeEEEeeeee
Q 046351 97 PKKICLSVISSISEVSANDWDTCALDATGPEKFNPFLTHGFLSSLEETGCAVKETGWTPCHIVVKDECENVLGVVPLYLK 176 (468)
Q Consensus 97 ~~~l~v~~~~si~~i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~~~e~~~~~~~~~g~~~~~l~v~d~~G~lva~~Pl~~~ 176 (468)
...++|+++.+|.+|+.++||+|+..+ .|||.+|+||+.+|+++++.+++||.|+|++++|+.|+++|++|+|++
T Consensus 5 ~~~~~ir~~~~l~ei~~d~Wd~la~~~-----~~PFl~~afLs~LE~Sgsa~~~tGW~p~HLtl~d~~~~L~ga~p~YlK 79 (387)
T COG3146 5 SPDYSIRWLAALAEIPQDAWDALAGPS-----RTPFLSHAFLSALEDSGSATAKTGWLPQHLTLWDAQGTLVGAAPLYLK 79 (387)
T ss_pred CCCceeehhhhhccCCHHHHHhhcccC-----CCcchhHHHHHHHhhcCCcccccCCCceeeEEecCCCcchhhhhhhhh
Confidence 345999999999999999999999875 689999999999999999999999999999999988999999999999
Q ss_pred eccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCCh
Q 046351 177 SHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSE 256 (468)
Q Consensus 177 ~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~ 256 (468)
.+|+|+||||++|++++.+.|.+||||++|++||||++||++|++++.+.+++.++|++++.++|++.|++++++.|+++
T Consensus 80 ~HS~GEyVFDh~WAda~eraG~~YYPKll~~vPFTPvtG~RlL~~~~~d~~~~~~~L~~~l~~~~~~~glSS~Hv~F~~~ 159 (387)
T COG3146 80 SHSYGEYVFDHGWADAYERAGGRYYPKLLCAVPFTPVTGPRLLARDGEDEEEVRQALLAGLDELCEQSGLSSAHVTFVDE 159 (387)
T ss_pred cccCceeeeccHHHHHHHHhcccccchhhcCCCCCCCCCceeecCccccHHHHHHHHHHHHHHHHHhcCCCceeEecCCH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhhhhhcccchhhhhccceeecCCCCCChHHHHHhhhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhc
Q 046351 257 NEWHKLGEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKN 336 (468)
Q Consensus 257 ~~~~~l~~~G~~~~~~~~~~~~~~~~~s~deyla~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~ 336 (468)
++...|+..||..+...+++|.|.++.|||+||+.|++|+||+|||++|+..+.|++|..+++.++++..++.|+..|.+
T Consensus 160 ~~~~~l~~~Gfl~r~d~qfhw~N~Gf~~fDdfL~~l~s~kRK~irrERr~v~~~Gi~i~~l~G~~lte~~wd~f~~fY~d 239 (387)
T COG3146 160 DEQPALEKAGFLHRLDQQFHWCNSGFQDFDDFLAALSSRKRKNIRRERRAVHKEGIEIQWLTGDDLTEAIWDAFFAFYMD 239 (387)
T ss_pred HHHHHHHhccchhhcCceEEEecCCcccHHHHHHHHHHhHHHHHHHHHHHHHhcCcEEEEeeCCcCCHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHH
Q 046351 337 TTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAA 416 (468)
Q Consensus 337 t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~A 416 (468)
|..+++|.||++++||..|.+.|.+++.|+.|..+|++||+++|++.+|++||+||||.. +.|+|||++|||+.|+||
T Consensus 240 T~~~~wg~pYLtr~Ff~~lge~m~~~vllv~A~r~g~~iaga~~lig~d~LYGR~WG~ie--d~p~LHFE~CYyQ~Id~a 317 (387)
T COG3146 240 TGSRKWGRPYLTRPFFSLLGERMADDVLLVMAKRGGRPIAGAFNLIGGDTLYGRYWGCIE--DHPFLHFEVCYYQAIDFA 317 (387)
T ss_pred hcccccCCchhhHHHHHHHHHhhhhhEEEEEeccCCccceEEEEeecCceeccccccccc--cCCcchhHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 689999999999999999
Q ss_pred HhcccccccccccccccccccccceeeeeeeeecCcchhhhhhhhhhhhcc
Q 046351 417 IELSLSAVEAGAQGEHKIQRGYLPVTTYSCHYLLHEDFRKPIENFLVREST 467 (468)
Q Consensus 417 ie~G~~~~d~G~~~e~K~~~G~~p~~~ys~~~~~~~~~~~~~~~~~~~~~~ 467 (468)
|++|+++||.|.+|++|..||+.|+++||+||+.||.|++++.+||.||.+
T Consensus 318 I~~gl~~feaGAqGeHKlaRGf~pv~~~SaH~iahp~lr~ava~yl~~Er~ 368 (387)
T COG3146 318 IAEGLQRFEAGAQGEHKLARGFPPVATYSAHWIAHPGLRQAVADYLDRERA 368 (387)
T ss_pred HHhCCceecCCCCcchhhhcCCCcccchhhHhhcChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864
No 2
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=100.00 E-value=2.6e-77 Score=603.58 Aligned_cols=353 Identities=51% Similarity=0.934 Sum_probs=341.7
Q ss_pred eccccCcCcccccccCCCCCCCCCcchhhhhhcccccccccccccCccceeeEeecCCCceeEEEeeeeeeccccceeec
Q 046351 107 SISEVSANDWDTCALDATGPEKFNPFLTHGFLSSLEETGCAVKETGWTPCHIVVKDECENVLGVVPLYLKSHSYGEFVFD 186 (468)
Q Consensus 107 si~~i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~~~e~~~~~~~~~g~~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d 186 (468)
||++|++++||+|+... .+||.+|+||.++|+++++.+++||.|+||++++ +|++||++|+|++.+|+|+||||
T Consensus 1 Si~~I~~~~W~~l~~~~-----~~PF~~~~fL~aLE~sg~v~~~tGW~p~hl~~~~-~~~lvaa~P~YlK~hS~GEyvFD 74 (370)
T PF04339_consen 1 SISEIPAADWDALAGPD-----DNPFLRHAFLAALEESGSVGPETGWQPRHLTLRD-GGRLVAAAPLYLKSHSYGEYVFD 74 (370)
T ss_pred ChhhCCHHHHHHHhCCC-----CCchhhHHHHHHHHHcCCcCCCCCCcceEEEEEE-CCEEEEEeeeeeecccCcceehh
Confidence 68899999999999842 6899999999999999999999999999999998 79999999999999999999999
Q ss_pred hhhHHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccc
Q 046351 187 HSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKG 266 (468)
Q Consensus 187 ~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G 266 (468)
++|++++.+.|++||||+++++||||++||+++++++.+.+++..+|++++.++|++.+++++++.|+++++...|...|
T Consensus 75 ~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G 154 (370)
T PF04339_consen 75 WAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQALEQLAEENGLSSWHILFPDEEDAAALEEAG 154 (370)
T ss_pred HHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeecCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999988888999999999999999999999999999998888999999
Q ss_pred hhhhhccceeecCCCCCChHHHHHhhhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcc
Q 046351 267 FLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPY 346 (468)
Q Consensus 267 ~~~~~~~~~~~~~~~~~s~deyla~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~ 346 (468)
|..+.+++++|.|.++.|||+||++|++|+||+|||++|+++++|+++++++++++++++++.|+++|.+|+.++++.++
T Consensus 155 ~~~r~~~qf~W~N~gy~~FDdfLa~Lss~kRk~IRrERr~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~y 234 (370)
T PF04339_consen 155 FLSRQGVQFHWHNRGYRSFDDFLAALSSRKRKNIRRERRKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPY 234 (370)
T ss_pred CceecCCceEEecCCCCCHHHHHHHhchhhHHHHHHHHHHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhhHHHHHhhhccCCeEEEEEeecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccc
Q 046351 347 LTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEA 426 (468)
Q Consensus 347 ~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~ 426 (468)
++++||+.|.+.|++++.+++++.+|++||+++++.+++++|++|||+.. +.++|||++|||+.|++||++|+++||.
T Consensus 235 Lt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~~LyGRYwG~~~--~~~~LHFe~cYYq~Ie~aI~~Gl~~f~~ 312 (370)
T PF04339_consen 235 LTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDDTLYGRYWGCDE--EIPFLHFELCYYQGIEYAIEHGLRRFEP 312 (370)
T ss_pred hcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCCEEEEeeecccc--cccCcchHHHHHHHHHHHHHcCCCEEEC
Confidence 99999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred cccccccccccccceeeeeeeeecCcchhhhhhhhhhhhcc
Q 046351 427 GAQGEHKIQRGYLPVTTYSCHYLLHEDFRKPIENFLVREST 467 (468)
Q Consensus 427 G~~~e~K~~~G~~p~~~ys~~~~~~~~~~~~~~~~~~~~~~ 467 (468)
|++||+|..||++|+++||+||+.||.|+++|.+||.+|++
T Consensus 313 GaqGEHK~~RGf~P~~t~S~H~~~~~~~~~ai~~fl~~e~~ 353 (370)
T PF04339_consen 313 GAQGEHKIARGFEPVPTYSAHWIADPRFRDAIARFLQRERA 353 (370)
T ss_pred CcchhHHHHcCCccccceeeeeeCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975
No 3
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=100.00 E-value=3.3e-34 Score=290.55 Aligned_cols=278 Identities=17% Similarity=0.308 Sum_probs=214.6
Q ss_pred CcccccccCCCCCCCCCcchhhhhhcccccccccccccCccceeeEeecCCCceeEEEeeeeeeccccceeechhhHHHH
Q 046351 114 NDWDTCALDATGPEKFNPFLTHGFLSSLEETGCAVKETGWTPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAY 193 (468)
Q Consensus 114 ~~Wd~l~~~~~~p~~~~~F~s~~wL~~~e~~~~~~~~~g~~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~ 193 (468)
++||+++.++ | .+++||+++|++++|++ .|+.++++++++ +|+++|++|++.++..
T Consensus 1 ~~Wd~fv~~~--~-~~~~fh~~~w~~~~~~~------~g~~~~~l~~~~-~g~lvg~lPl~~~r~~-------------- 56 (330)
T TIGR03019 1 ARWDAFVEAH--P-EATFFHRAGWQRVIESA------FGHPTYFLYAER-DGRIVGVLPLAEIRSR-------------- 56 (330)
T ss_pred CcHHHHHHcC--C-CCCchhhHHHHHHHHHh------cCCCceEEEEec-CCcEEEEecceecccc--------------
Confidence 3699999998 3 48999999999999887 578889999987 8999999999865311
Q ss_pred hhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhcc
Q 046351 194 YGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGM 273 (468)
Q Consensus 194 ~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~ 273 (468)
.++..+++.||++++|+ ++. .++..++|++++.+++++.++..+.++..++.. .++... ..
T Consensus 57 ------~~g~~l~S~P~~~ygG~--l~~----~~~~~~~l~~~~~~~~~~~~~~~l~lr~~~~~~------~~~~~~-~~ 117 (330)
T TIGR03019 57 ------LFGNFLVSLPFCVYGGI--AAD----SAEVAQALEAEAQGLADRLGVGHLELRHLTPRH------SGWPAK-DL 117 (330)
T ss_pred ------ccCCCeeecCCCCcCcc--ccC----CHHHHHHHHHHHHHHHHhcCCCEEEecCCCCCc------cccccC-Cc
Confidence 02345667888888884 332 234566788898999999999998887443321 111111 12
Q ss_pred ceeecCCCCCChHHHHHhhhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHH
Q 046351 274 QYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFH 353 (468)
Q Consensus 274 ~~~~~~~~~~s~deyla~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~ 353 (468)
.+++......++|++|++|++|.|++|||..| .|++++.. +++++|+++|..|++|. |.++++++||+
T Consensus 118 ~~t~~~dL~~~~e~~~~~~~~k~R~~IRka~k----~Gv~v~~~-------~~l~~F~~l~~~t~~r~-g~p~~~~~~f~ 185 (330)
T TIGR03019 118 YVTFRKAIPADPEANWLAIPRKQRAMVRKGIK----AGLTVTVD-------GDLDRFYDVYAENMRDL-GTPVFSRRYFR 185 (330)
T ss_pred EEEEEEcCCCCHHHHHHhcCHHHHHHHHHHHH----CCeEEEEC-------CcHHHHHHHHHHHHhcC-CCCCCCHHHHH
Confidence 33333223468999999999999999998654 79888651 34999999999999876 66789999999
Q ss_pred HhhhccCCeEEEEEee-cCCccccccccccccccccccccccCCCccCCCc-chhhhHHHHHHHHHhccccccccccc--
Q 046351 354 DMGSKMKDQVLLVVAE-DGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSL-HFEACYYQAIEAAIELSLSAVEAGAQ-- 429 (468)
Q Consensus 354 ~L~~~l~~~~~l~~a~-~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L-~~~ll~~~~I~~Aie~G~~~~d~G~~-- 429 (468)
.|.+.+++++.+++++ .||++||+.+++.++++++..|.|+.+ ++..+ .+++++|++|++|+++|++.||||++
T Consensus 186 ~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~~~~~~~~g~~~--~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~ 263 (330)
T TIGR03019 186 LLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRDEVLPYYAGGLR--EARDVAANDLMYWELMRRACERGLRVFDFGRSKR 263 (330)
T ss_pred HHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCCEEEEEeccChH--HHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCC
Confidence 9999999888888888 899999999999999988765544433 23333 46789999999999999999999984
Q ss_pred --c--cccccccccceeeeeeeee
Q 046351 430 --G--EHKIQRGYLPVTTYSCHYL 449 (468)
Q Consensus 430 --~--e~K~~~G~~p~~~ys~~~~ 449 (468)
| +||.+||++|++++ |.|.
T Consensus 264 ~~G~~~FK~~~G~~~~~l~-~~~~ 286 (330)
T TIGR03019 264 GTGPFKFKKNWGFEPQPLH-YEYL 286 (330)
T ss_pred CCccHHHHhcCCCeeccce-EEEE
Confidence 2 59999999999986 4444
No 4
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=99.91 E-value=2e-24 Score=224.21 Aligned_cols=299 Identities=22% Similarity=0.290 Sum_probs=200.3
Q ss_pred cCcCcccccccCCCCCCCCCcchhhhhhcccccccccccccCccceeeEeecCCCceeEEEeeeeeeccccceeechhhH
Q 046351 111 VSANDWDTCALDATGPEKFNPFLTHGFLSSLEETGCAVKETGWTPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWA 190 (468)
Q Consensus 111 i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~~~e~~~~~~~~~g~~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~ 190 (468)
|++++|++++..+ | .++++||++|-+.-+. .||.+.++.+.++++.++|++.++.+....
T Consensus 1 it~~e~d~f~~~~--~-~~~flQs~~wa~vk~~-------~gw~~~~vgv~~d~~~v~aa~ll~~~~~~~---------- 60 (406)
T PF02388_consen 1 ITAEEFDAFVENH--P-QGNFLQSSEWAEVKEK-------RGWEVERVGVKDDGGEVAAAALLLRKKPFK---------- 60 (406)
T ss_dssp --HHHHHHHHHCS--T-T--CCCSHHHHHHCHH-------TTSEEEEEEEE-TTS-EEEEEEEEEEECTT----------
T ss_pred CCHHHHHHHHHhC--C-CCCcchHHHHHHHHHH-------CCCeEEEEEEEeCCCeEEEEEEEEEeccCC----------
Confidence 4678999999998 4 4899999999666543 599999999998557666666555443110
Q ss_pred HHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecC----C-----------
Q 046351 191 DAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFP----S----------- 255 (468)
Q Consensus 191 ~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~----~----------- 255 (468)
|. -+.-+| .||.+ + ....+++..++++|++++++.++..+.++.. .
T Consensus 61 ------g~-----~~~yip----rGPv~--d--~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g~~~~~~ 121 (406)
T PF02388_consen 61 ------GF-----KYAYIP----RGPVM--D--YSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDGEPIEGE 121 (406)
T ss_dssp ------TC-----EEEEET----T--EC-----TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS-EEEE-
T ss_pred ------ce-----eEEEEC----CCCCC--C--CCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhcccccccccCc
Confidence 10 011222 35422 1 2246788999999999999999888777321 0
Q ss_pred --hhhhhhhcccchhhhh---c----ccee---ecCCCCCChHHHHHhhhhhhhhhhHHHhccccccccccccccCcccc
Q 046351 256 --ENEWHKLGEKGFLQRI---G----MQYH---WRNRNYKNFDEFLMDMKQNKRKNIRQERKKISAQNLTMKRLRGHEIK 323 (468)
Q Consensus 256 --~~~~~~l~~~G~~~~~---~----~~~~---~~~~~~~s~deyla~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~ 323 (468)
....+.|...||.... + .+.. +.++...+.|++|++|+++.|++||++.| .||+|+.++
T Consensus 122 ~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~dL~~~~~e~ll~~~~~~~R~~IrkA~k----~GV~vr~~~----- 192 (406)
T PF02388_consen 122 ENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVKDLTGFSEEELLKSFSKKTRYNIRKAEK----KGVEVREGS----- 192 (406)
T ss_dssp S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEEEGCC-TCHHCHHCS-HHHHHHHHHHHC----TTEEEEEE------
T ss_pred chHHHHHHHHhcCceecCcccCCCcccCccEEEEEECCCCCHHHHHHHhcHHHHHHHHHhhc----CceEEEEcC-----
Confidence 1223456666765421 1 1222 23344336799999999999999999766 899999863
Q ss_pred ccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCC-------------------------------
Q 046351 324 AKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGD------------------------------- 372 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg------------------------------- 372 (468)
.++++.|++|+..|.+|+ ++..++.+||+.|.+.+++++.+++|+.++
T Consensus 193 ~e~l~~F~~l~~~T~~R~-~f~~r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~ 271 (406)
T PF02388_consen 193 REELDDFYDLYKETAERK-GFSIRSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKK 271 (406)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-----HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THH
T ss_pred HHHHHHHHHHHHHHHhhC-CCcccCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 367999999999999876 888899999999999999999999999876
Q ss_pred -------------------------------ccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhccc
Q 046351 373 -------------------------------ELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSL 421 (468)
Q Consensus 373 -------------------------------~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~ 421 (468)
.+||+++++.+|+++++.|.|+.+ +.......++++|++|++|+++|+
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~~~yly~gs~~-~~~~~~~~~~l~~~~i~~a~~~G~ 350 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDEAYYLYGGSDE-EYRKFYAPYLLQWEAIKYAKEKGI 350 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTEEEEEEEEE-C-GCGGCTHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCEEEEEECccch-hhHhcCcchHHHHHHHHHHHHCCC
Confidence 489999999999999887756443 222233457889999999999999
Q ss_pred cccccccc-c------------cccccccccceeeee-eeeecCcchhhhhh
Q 046351 422 SAVEAGAQ-G------------EHKIQRGYLPVTTYS-CHYLLHEDFRKPIE 459 (468)
Q Consensus 422 ~~~d~G~~-~------------e~K~~~G~~p~~~ys-~~~~~~~~~~~~~~ 459 (468)
++||||+. + .||...|.......- +.+..+|.+|.+..
T Consensus 351 ~~ydf~Gi~~~~~~~~~~~Gl~~FK~~F~g~~~e~~G~f~~~~~p~~y~~~~ 402 (406)
T PF02388_consen 351 KRYDFGGISGDFDGSDPDYGLYKFKKGFGGQIVEYIGEFDLPLNPLLYKLYQ 402 (406)
T ss_dssp SEEEEEE-SSSSTTTHTTHHHHHHHHCCT-CEEEE--EEEEESSHHHHHHHH
T ss_pred CEEEeeCCCCCCCCCcccchHHHHhhcCCCcEEEeeeeEEEECCHHHHHHHH
Confidence 99998663 1 255566555444322 88999998887764
No 5
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=2.4e-16 Score=157.77 Aligned_cols=314 Identities=16% Similarity=0.145 Sum_probs=192.6
Q ss_pred eeccCCCCCcccCCC-----CcceEEEEeeeeccccCcCcccccccCCCCCCCCCcchhhhhhcc-cccccccccccCcc
Q 046351 81 TLTGSGSEGVAENDG-----GPKKICLSVISSISEVSANDWDTCALDATGPEKFNPFLTHGFLSS-LEETGCAVKETGWT 154 (468)
Q Consensus 81 ~~~~~~~~~~~~~~~-----~~~~l~v~~~~si~~i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~~-~e~~~~~~~~~g~~ 154 (468)
++|=.++++++++.. +.+..+|+++.+..++ ...|.+|.... -.++||+++|... |... .+
T Consensus 8 ~~t~~g~~~~~~~~~~~~~~a~d~e~v~~~~~~~a~-~a~W~~L~~~~----~~s~~q~~~W~~~~~~~~------~~-- 74 (406)
T COG5653 8 IATVDGGRDAAQNASPVAAGAADREVVDLHALSAAD-RAAWRQLQATG----LGSPHQGFDWILAAWAVT------PG-- 74 (406)
T ss_pred eecccCCCccccccchhhhcccceeeeehhhcchhh-HHHHHHHHhcC----CCCcccChHHHHHHhhcC------CC--
Confidence 333334445555553 3455666666655544 45799999875 3799999999994 4433 12
Q ss_pred ceeeEeec-CCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCc-hhHHHHHH
Q 046351 155 PCHIVVKD-ECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTS-IKDQVIDV 232 (468)
Q Consensus 155 ~~~l~v~d-~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~-~~~~~~~a 232 (468)
...++++- .+|++++++|+-+.+.. |..+ . -..+.|++.++- -|+++.. ...+....
T Consensus 75 aellvvr~a~~Ge~l~~LPl~~~rr~-g~rv-------------a-----r~~g~~~sDy~~--~L~~~~~~~~~~~~~~ 133 (406)
T COG5653 75 AELLVVRIAAGGEPLFLLPLEIRRRG-GIRV-------------A-----RPLGAPHSDYNH--GLVAPAGVTGSALSAS 133 (406)
T ss_pred CceEEEEecCCCceeeeccHHHHhcc-ccce-------------e-----eecCCCcccccc--cccCCCCCccchhhHH
Confidence 23344442 47999999997655421 1101 0 012345555422 1333322 11111111
Q ss_pred HHHHHHH-hhhhcccceeEEecCC-----h-hhhhhhcccchhhhhccceeecCCCCCChHHHHHh-hhhhhhhhhHHHh
Q 046351 233 IISAMKD-LTAKSRVSSLHITFPS-----E-NEWHKLGEKGFLQRIGMQYHWRNRNYKNFDEFLMD-MKQNKRKNIRQER 304 (468)
Q Consensus 233 L~~al~~-la~~~~~~~~~l~~~~-----~-~~~~~l~~~G~~~~~~~~~~~~~~~~~s~deyla~-lssk~Rk~IRr~~ 304 (468)
...+... +.. ....+.+.-.+ . +....|..... ++..+.. ....+++..|.. ..+|+||+.|+..
T Consensus 134 ~~~~a~r~~~~--~~d~~~~~~i~~~~~G~a~pla~L~~~~~---~~~s~~l--~l~~~~~~~l~~~~~KrrRK~~r~~~ 206 (406)
T COG5653 134 DALGAGRDLRF--RADLLADEGIPRDLRGAANPLAYLAPLRD---PNISFYL--ALRGSAEALLKRICDKRRRKKFRKLE 206 (406)
T ss_pred HHHhhhhhccc--hhhhccccCCcccCCCCCChhhhhccccC---CCcceEe--ecCCCcchHHHHhhhHHHHHHHHHHH
Confidence 1112211 111 11111211000 0 11122221111 2222221 235677777776 6777889999999
Q ss_pred ccccccc-cccccccCccccccchhhHhhhhhccCCCCCCCcch----hhHHHHHhhhcc-C-CeEEEEEeecCCccccc
Q 046351 305 KKISAQN-LTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYL----TRDFFHDMGSKM-K-DQVLLVVAEDGDELVAG 377 (468)
Q Consensus 305 Rk~~~~G-v~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~----~~~Ff~~L~~~l-~-~~~~l~~a~~dg~~VA~ 377 (468)
|++++-| +++......+..++.++.|+++-+....+.+.+..| +.+||+.|+..- . ...+++..+.+|++||.
T Consensus 207 Rr~~evG~~r~v~a~s~d~~e~~~~~l~~~Kr~rfa~~G~~Dlf~~~~t~~fl~dL~~~~~~d~~~rl~gL~~G~~lvAV 286 (406)
T COG5653 207 RRFEEVGAVRFVAARSPDEVEALFATLFRWKRLRFARTGQFDLFRAGWTRDFLRDLFTQRAEDGSGRLFGLHAGGRLVAV 286 (406)
T ss_pred HHHhhcCCeeEEecCCCchHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHhccCcCCceEEEEEeeCCEEEEE
Confidence 9999977 888887766666789999999888877766544443 468999987763 2 35788899999999999
Q ss_pred cccccccccccccccccCCCc---cCCCcchhhhHHHHHHHHHhcccccccccccc-ccccccccc
Q 046351 378 ALNLIGGDSLFGRLWGCHPRA---YYPSLHFEACYYQAIEAAIELSLSAVEAGAQG-EHKIQRGYL 439 (468)
Q Consensus 378 ~l~l~~g~~l~~~y~G~~~~~---~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~-e~K~~~G~~ 439 (468)
.+++..++|++..+ ++.+.+ .+|+. ++++.+|+|+++.|+.+||||.|+ .||.++|..
T Consensus 287 ~~~lr~~~t~h~~l-~a~dpe~~~~SPG~---~lf~d~i~~~~~~g~~~~DfgvG~q~YKR~~~~~ 348 (406)
T COG5653 287 HGLLRQGGTYHAWL-GAIDPEFARASPGM---LLFLDLIEWACGQGLARFDFGVGDQSYKRHWGDQ 348 (406)
T ss_pred EeeeccCCEEEEEe-eccCHHHhhcCchH---HHHHHHHHHHhcCCCeEEeecCCChHHHHhhhhH
Confidence 99999999998754 555531 23443 678999999999999999999997 599999953
No 6
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=99.66 E-value=7.2e-17 Score=142.00 Aligned_cols=134 Identities=27% Similarity=0.395 Sum_probs=110.3
Q ss_pred hhhhhhhHHHhccccccc-cccccccCccccccchhhHhhhhhccCCCC-CCC-cchhhHHHHHhhhcc--CCeEEEEEe
Q 046351 294 QNKRKNIRQERKKISAQN-LTMKRLRGHEIKAKHWDSFYRFYKNTTDNK-WGS-PYLTRDFFHDMGSKM--KDQVLLVVA 368 (468)
Q Consensus 294 sk~Rk~IRr~~Rk~~~~G-v~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~-~g~-~~~~~~Ff~~L~~~l--~~~~~l~~a 368 (468)
+|.|+++||.+|++++.| +++++.+ +.++++.|++++.++++++ ... +..+.+||+.|.+.+ ++.+.++++
T Consensus 1 ~k~r~~~rr~~r~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 76 (142)
T PF13480_consen 1 KKFRKKIRRAIRRAEKLGGVRFEVAT----DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVL 76 (142)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEeC----CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEE
Confidence 578999999999999988 7777643 2467999999999999876 433 568899999999998 678899999
Q ss_pred ecCCccccccccccccccccccccccCCCccCCCcc-hhhhHHHHHHHHHhcccccccccccc-ccc
Q 046351 369 EDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLH-FEACYYQAIEAAIELSLSAVEAGAQG-EHK 433 (468)
Q Consensus 369 ~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~-~~ll~~~~I~~Aie~G~~~~d~G~~~-e~K 433 (468)
+.||++||+.+++.++++++..+.|..+ ....+. ..+++|++|++|+++|++.||||+|. ++|
T Consensus 77 ~~~g~~va~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g~~~yK 141 (142)
T PF13480_consen 77 YDGGEPVAFALGFRHGGTLYYWYGGYDP--EYRKYSPGRLLLWEAIRWAIERGLRYFDFGGGNEPYK 141 (142)
T ss_pred EECCEEEEEEEEEEECCEEEEEEEEECH--hhHhCCHHHHHHHHHHHHHHHCCCCEEEECCCChHhC
Confidence 9999999999999999999876666533 223332 35778999999999999999999986 566
No 7
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=99.61 E-value=2.4e-15 Score=153.46 Aligned_cols=295 Identities=19% Similarity=0.270 Sum_probs=202.1
Q ss_pred ccCcCcccccccCCCCCCCCCcchhhhhhcccccccccccccCccceeeEeecCCCceeEEEeeeeeeccccceeechhh
Q 046351 110 EVSANDWDTCALDATGPEKFNPFLTHGFLSSLEETGCAVKETGWTPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSW 189 (468)
Q Consensus 110 ~i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~~~e~~~~~~~~~g~~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~ 189 (468)
.+..++-+.++.++. ++++.||.+|-..-. ..||..+++.+.+ +++.|+++.++.+..+.|.+.
T Consensus 5 ~lt~~ef~~ft~e~~---~~~~lQss~~~~~k~-------~~~~~~~~~~v~~-~~~~v~aa~ll~k~~~~~~~~----- 68 (418)
T COG2348 5 GLTIEEFDAFTKEHE---SASFLQSSAWAELKA-------NWGWEAHLIGVKK-DGNAVIAASLLSKKLPLGFYT----- 68 (418)
T ss_pred cccHHHHHHHHhhhh---hhhhhhcchHHHHhh-------ccCCcceeEEEEe-cCceeeeeeeeeeeccCCceE-----
Confidence 345567778887763 466888888855433 3589888999998 788888888887654432111
Q ss_pred HHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHHHHHHhhhhcccceeEEe-cC-----C--------
Q 046351 190 ADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHIT-FP-----S-------- 255 (468)
Q Consensus 190 ~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~-~~-----~-------- 255 (468)
.|+ | -||.+ +....+++..+++.+..+++..++..+.++ +. +
T Consensus 69 ---------~~~----------p-rGPv~----dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~~~~~~ 124 (418)
T COG2348 69 ---------YYI----------P-RGPVM----DYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGGEIIEN 124 (418)
T ss_pred ---------EEe----------c-CCCcc----cccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCCccccC
Confidence 011 2 25433 222466778899999999998887776662 10 0
Q ss_pred ---hhhhhhhcccchhhh-----h--ccceeec---CCCCCChHHHHHhhhhhhhhhhHHHhccccccccccccccCccc
Q 046351 256 ---ENEWHKLGEKGFLQR-----I--GMQYHWR---NRNYKNFDEFLMDMKQNKRKNIRQERKKISAQNLTMKRLRGHEI 322 (468)
Q Consensus 256 ---~~~~~~l~~~G~~~~-----~--~~~~~~~---~~~~~s~deyla~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~ 322 (468)
.+..+.|.+.|+... . ..+..|. +....+.|+.+.+|++++|++||+..+ .||+++.+.
T Consensus 125 ~~n~~~i~~l~~lG~k~~g~t~~~~~~iqp~~~~~ldl~d~~ed~L~~~f~~~~r~~Ik~a~k----~Gvkv~~~~---- 196 (418)
T COG2348 125 YNNLAIIKLLKDLGYKHSGFTKGLDDSIQPRWHSVLDLKDKTEDQLLKSFSKKTRRNIKKAEK----KGVKVRRLS---- 196 (418)
T ss_pred cchHHHHHHHHHhhhhhcCcccccCcccccchhhhccccccChhHHHHhcChhhhHHHHHHhh----cCeeEEEcc----
Confidence 112234555555421 1 1233332 233457788999999999999999654 799998753
Q ss_pred cccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecC-------------------------------
Q 046351 323 KAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDG------------------------------- 371 (468)
Q Consensus 323 ~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~d------------------------------- 371 (468)
.+.++.|++|+..|.+|+ ++-..+.+||+.+.+.+++.+.+.+|..|
T Consensus 197 -~eel~~F~~L~k~T~eR~-~~~~r~~~Y~~~~~d~y~d~a~~~la~l~~~e~~~~l~~~l~~~~~~~~r~~~~l~~~~~ 274 (418)
T COG2348 197 -REELDLFSELMKKTSERK-GFTDRSLSYYENFYDIYKDKAELPLAYLDLDEYLKKLNQELAKLAAEIERVQEALKESPK 274 (418)
T ss_pred -HHHHHHHHHHHHHHHhcc-CeeeccHHHHHHHHHHHhhhhhhhhhhcCHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc
Confidence 467999999999998775 77788899999998888887666644322
Q ss_pred ---------------------------CccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccc
Q 046351 372 ---------------------------DELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAV 424 (468)
Q Consensus 372 ---------------------------g~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~ 424 (468)
+-++|+.+++..+.+.++.|.| ++++........+++|++|+.|+++|+.+|
T Consensus 275 ~~k~~~~l~~l~~q~~~~~~~~~~~~~~i~lAg~l~~~~~~~~~yl~gg-s~~~y~~~~~py~lqw~~i~~A~k~Gi~~y 353 (418)
T COG2348 275 SEKAQNKLNRLQMQLEAFEERIALIEEVIVLAGILFLYYGTEVVYLYGG-SSDEYNKFMAPYLLQWEAIKYAKKRGIKWY 353 (418)
T ss_pred hhhhhhhHHHHHHHHHhhHHHHhhcccceeeeeeEEEEcceEEEEEecc-CcHHHHhhchHHHHHHHHHHHHHHcCCcee
Confidence 1278888888888888877755 443233344567889999999999999999
Q ss_pred ccccc-c----------cccccccccceeee---eeeeecCcchh
Q 046351 425 EAGAQ-G----------EHKIQRGYLPVTTY---SCHYLLHEDFR 455 (468)
Q Consensus 425 d~G~~-~----------e~K~~~G~~p~~~y---s~~~~~~~~~~ 455 (468)
|||+- + -++++.|+.+.... .+.+..+|...
T Consensus 354 nf~GI~~~~d~~~~~yGv~~FK~gFn~~I~e~iG~f~~p~~pl~~ 398 (418)
T COG2348 354 NFYGIPGDFDESSEDYGVYRFKKGFNGQIEEYIGEFDYPVNPLKH 398 (418)
T ss_pred eecCCCCCCCCCcccchhHHhhhcCCceEEEeccceeccCchhhH
Confidence 98763 2 16788888777543 36677777773
No 8
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.1e-06 Score=93.04 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhccceeecCCCCCChHHHHHhhhhhhhhhhHHHhc
Q 046351 226 KDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERK 305 (468)
Q Consensus 226 ~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~s~deyla~lssk~Rk~IRr~~R 305 (468)
+++.+..++++..++|+.+|+..++....+ +..+.+.+.|+....--.... ++..+| +|+.|+++++|+..+
T Consensus 267 ~~~~~~eli~~F~e~A~~~G~r~~fy~vs~-~~~p~y~d~Gl~~~klGEeA~--Vdl~~F-----sl~Gk~~~~~R~a~~ 338 (538)
T COG2898 267 DEEAWPELIWAFLELADRHGWRPVFYGVSE-EGAPLYADAGLRALKLGEEAV--VDLANF-----SLSGKRMRGLRQAVN 338 (538)
T ss_pred ChhHhHHHHHHHHHHHHhcCCeeEEEEeCc-cccHHHHhcCcceeeccceEE--Eehhhc-----cccCcccccHHHHHH
Confidence 455678899999999999999888775433 345566677776433111122 123444 379999999999999
Q ss_pred cccccccccccccCccccccchhhHhhhhhccCC-CCCCCc-chhhHHHHHhhhccCCeEEEEEeecCCccccccccccc
Q 046351 306 KISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTD-NKWGSP-YLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIG 383 (468)
Q Consensus 306 k~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~-r~~g~~-~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~ 383 (468)
|+++.|+++|+++ .++..+.++++.++=.+ |- .+...+ -++..||..- ..+...+.+.+.+|++||++-.+..
T Consensus 339 r~~r~G~tfeI~~-~~~~~~~l~eL~~iSD~-Wl~~~~~rEkgFsLG~fdp~---yl~~~~va~~~~~g~VvaFa~l~~~ 413 (538)
T COG2898 339 RADREGLTFEIVP-PDQSPAELDELRAISDE-WLDHKTRREKGFSLGFFDPR---YLDIFPVAAVDNEGEVVAFANLMPT 413 (538)
T ss_pred HHHhcCcEEEEeC-CccChHHHHHHHHhCHH-hhhcCCcccceeeccCCCcc---ccccceeeEEcCCCCeEEEEeeccc
Confidence 9999999999987 45556667776665333 31 111111 1223333221 2344567777999999999988875
Q ss_pred cc-cccc----cccccCCCccCCCcchhhhHHHHHHHHHhccccccccccc
Q 046351 384 GD-SLFG----RLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 384 g~-~l~~----~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
+. +-+. +| ++ +.|+.--+.++-++|.|+.|+|+++|++|..
T Consensus 414 ~~~~~~SlDlMR~---sp--~ap~g~mdfLf~~li~~aKe~G~~~fsLgmA 459 (538)
T COG2898 414 GGKEGYSLDLMRR---SP--DAPNGTMDFLFSELILWAKEEGYQRFSLGMA 459 (538)
T ss_pred CCcceeEEEeeec---CC--CCCchHHHHHHHHHHHHHHHcCCeEEecCCc
Confidence 54 2111 12 11 1233333456789999999999999999875
No 9
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=97.98 E-value=2.4e-06 Score=82.60 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=85.7
Q ss_pred hhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchh----hHHHHHhhhccCCeEEEEE
Q 046351 292 MKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLT----RDFFHDMGSKMKDQVLLVV 367 (468)
Q Consensus 292 lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~----~~Ff~~L~~~l~~~~~l~~ 367 (468)
+|+|+|++=|+++|+++++|-.|+-+.. .+. +++.++|...+.+++|..... .+||+.|-+.+-+ .+
T Consensus 107 fSkKt~~~rrrElrkF~~~GG~v~~v~~--~S~---~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG----~v 177 (264)
T PF07395_consen 107 FSKKTRKNRRRELRKFIEAGGSVRPVSE--FSP---EELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFG----SV 177 (264)
T ss_pred hchHHHHHHHHHHHHHHHcCCEEEEHHH--CCH---HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhhee----eE
Confidence 6999999999999999999976665442 222 344444455555555544333 4666666554333 35
Q ss_pred eecCCccccccccccccc--ccccccc-ccCCCccCCCcch-hhhH----HHHHHHHHhcccc-cccccccc-ccccccc
Q 046351 368 AEDGDELVAGALNLIGGD--SLFGRLW-GCHPRAYYPSLHF-EACY----YQAIEAAIELSLS-AVEAGAQG-EHKIQRG 437 (468)
Q Consensus 368 a~~dg~~VA~~l~l~~g~--~l~~~y~-G~~~~~~~~~L~~-~ll~----~~~I~~Aie~G~~-~~d~G~~~-e~K~~~G 437 (468)
+..+|+|||+.+++.-.. .++.-|. |+.+. ....+.. ++++ ..+.+.|.++|.. +|.||.-. ++|.+|
T Consensus 178 L~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp-~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrfSfGr~~~~YK~rW- 255 (264)
T PF07395_consen 178 LFLNGQPCAIQLVYKVESPKWVYFDYINGGYDP-ECRDFSPGSILMWLNIQDAWEYCRAQGKPLRFSFGRPDWDYKDRW- 255 (264)
T ss_pred EEECCcceEEEEEEEecCCCeEEEecccCccCc-ccccCCCccEEEEeeHHHHHHHHHHhCCceEEEcCCCChHHHhhc-
Confidence 678999999999998764 3332232 33332 1111111 2333 4566788888865 45688764 899888
Q ss_pred ccceee
Q 046351 438 YLPVTT 443 (468)
Q Consensus 438 ~~p~~~ 443 (468)
|.+.|+
T Consensus 256 c~~~p~ 261 (264)
T PF07395_consen 256 CNRVPV 261 (264)
T ss_pred CccccC
Confidence 444444
No 10
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=97.86 E-value=1.8e-05 Score=79.31 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhh-ccceeecCCCCCChHHHHHhhhhhhhhhhHHHhcccc
Q 046351 230 IDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRI-GMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERKKIS 308 (468)
Q Consensus 230 ~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~s~deyla~lssk~Rk~IRr~~Rk~~ 308 (468)
..++++++.+.|++.+...+.+. .+++....++..|+.... +..+.+ +.+++ +|+.|+.+++|+.+++++
T Consensus 57 ~~~~i~~f~~~~~~~~~~~~~~~-v~e~~~~~~~~~g~~~~~~g~eyv~------~~~~~--~l~Gkk~~~~Rn~in~~~ 127 (299)
T PF09924_consen 57 RPELIEEFLEFADRNGWKPIFYG-VSEEFLELLEELGFESNRDGEEYVY------DLEDF--TLSGKKFRKKRNHINRFE 127 (299)
T ss_dssp HHHHHHHHHHHHHHCTS--EEEE-E-HHHHHHHHHHSEEE-GGG-EEEE------EHHHH--H--SGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceEEEE-CCHHHHHHHHHcCCeeecCCcEEEE------Ecccc--ccCCchhhhHHHHHHHHh
Confidence 45778888899988887665543 345555666666754332 222211 34555 788888888899888899
Q ss_pred ccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccC-CeEEEEEeec-CCcccccccccccc--
Q 046351 309 AQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMK-DQVLLVVAED-GDELVAGALNLIGG-- 384 (468)
Q Consensus 309 ~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~-~~~~l~~a~~-dg~~VA~~l~l~~g-- 384 (468)
+.|+++++....+.+.+..+++.++... |.+. . ..-...|...+.+... .+...++++. +|+++|+.+....+
T Consensus 128 k~G~~~~~~~~~~~~~~~~~el~~i~~~-W~~~-~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~ 204 (299)
T PF09924_consen 128 KEGYTFEVVPIPELDPELRDELLEISDE-WLKE-K-ERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGR 204 (299)
T ss_dssp HH--T-EEEE-----GGGHHHHHHHHHH-HHHH-C-THHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-T
T ss_pred cCceEEEEEECCCCCHHHHHHHHHHHHH-HHhc-C-chhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCC
Confidence 9998887765433345566666666444 4332 1 1222445555444432 2466778888 99999999988665
Q ss_pred ccccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccccc
Q 046351 385 DSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 385 ~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
+++...+.=... +...++ .+.+..++++++.+.|++.++||..
T Consensus 205 ~~~~~~~~k~~~-~a~~G~-~e~l~~~~~~~~~~~g~~~lnLg~a 247 (299)
T PF09924_consen 205 DGWSIDFEKADP-DAPKGI-YEFLNVEFAEHLKAEGVEYLNLGFA 247 (299)
T ss_dssp TEEEEEEEEE-T-T-STTH-HHHHHHHHHHHS--TT--EEE----
T ss_pred ccEEEEEEecCC-CCCCcH-HHHHHHHHHHhhhhCCceEEEcccc
Confidence 333222221121 113333 3456788999999999999998876
No 11
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.84 E-value=7.5e-05 Score=86.56 Aligned_cols=190 Identities=14% Similarity=0.068 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhccceeecCCCCCChHHHHHhhhhhhhhhhHHHhc
Q 046351 226 KDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKRKNIRQERK 305 (468)
Q Consensus 226 ~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~s~deyla~lssk~Rk~IRr~~R 305 (468)
+++.+.+++.++.++|+.++...+++.. +++....+.+.|+....--...+. +..+| +++.|.++++|++++
T Consensus 293 ~~e~~~~~i~~F~~~a~~~g~~p~fy~v-se~~~~~~~~~G~~~lklGeEavv--dl~~F-----sl~Gk~~~~lR~a~n 364 (1094)
T PRK02983 293 DPEAWPQAIDAWLALARTYGWAPAVMGA-SEAGARAYREAGLSALELGDEAIL--DTADF-----TLSGPDMRPVRQAVT 364 (1094)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEE-CHHHHHHHHHcCCcEEEecceEEE--ccccC-----CccCchhHHHHHHHH
Confidence 4566788999999999999987665543 344445667788864321111222 33444 367889999999999
Q ss_pred cccccccccccccCccccccchhh---HhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEe-ecCCccccccccc
Q 046351 306 KISAQNLTMKRLRGHEIKAKHWDS---FYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVA-EDGDELVAGALNL 381 (468)
Q Consensus 306 k~~~~Gv~v~~~~~~~~~~~~ld~---f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a-~~dg~~VA~~l~l 381 (468)
|+++.|+++++.+.+++..+.+++ +.+-+......+ |+.. ....|... ...+..++.+ ..+|+++|+..+.
T Consensus 365 ra~r~G~t~~i~~~~~~~~~~~~~L~~isd~Wl~~~~Ek-GFSm-~LGr~~~~---~~~~~~i~~a~d~~G~i~af~s~~ 439 (1094)
T PRK02983 365 RVRRAGYTVRIRRHRDLPAEEMAQVIARADAWRDTETER-GFSM-ALGRLGDP---ADGDCLLVEAHDADGQVVALLSFV 439 (1094)
T ss_pred HHHhCCCEEEEeeCCCCCHHHHHHHHHHHHHHhcCCCCC-ceee-ecCcccch---hcCceEEEEEECCCCeEEEEEEEe
Confidence 999999999987654544434444 444444432111 3221 01222221 2233445555 4579999998888
Q ss_pred cccccccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccccc
Q 046351 382 IGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 382 ~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
-.+..=+..-.--.+ .+.|+--.+.++-++|+|+.++|+++++||..
T Consensus 440 p~~~~g~slDLMRr~-pdapnGvmE~L~~~l~~~~k~~G~~~~sLg~A 486 (1094)
T PRK02983 440 PWGRRGLSLDLMRRS-PDAPNGVIELMVAELALEAESLGITRISLNFA 486 (1094)
T ss_pred eeCCCCEEEEecccC-CCCCCCHHHHHHHHHHHHHHHcCCCEEEechh
Confidence 754321110100000 02333335667889999999999999999875
No 12
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=97.64 E-value=1.8e-05 Score=77.25 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=85.3
Q ss_pred hhhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcc--hhhHHHHHhhhccCCeEEEEEe
Q 046351 291 DMKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPY--LTRDFFHDMGSKMKDQVLLVVA 368 (468)
Q Consensus 291 ~lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~--~~~~Ff~~L~~~l~~~~~l~~a 368 (468)
++|+|+|++=||++|++.++|-+|+-+.. .+. +++.++|.+..++++|... .+++-..++.+.+.+-+.=.++
T Consensus 134 ~fSkKt~~~rrrEl~kF~~~GG~v~~is~--fS~---~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VL 208 (298)
T PRK15312 134 TFSSKFEKTRRNEYQRFLRNGGSVKSVAD--CSS---DELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHIL 208 (298)
T ss_pred hhhhHhHHHHHHHHHHHHHcCCEEEEhHH--CCH---HHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEE
Confidence 47999999999999999999977765543 222 3445555555555555332 1333333333334443333466
Q ss_pred ecCCcccccccccccccc--cccccc-ccCCCccCCCcch-hhhHH----HHHHHHHhcccc-ccccc--cc-ccccccc
Q 046351 369 EDGDELVAGALNLIGGDS--LFGRLW-GCHPRAYYPSLHF-EACYY----QAIEAAIELSLS-AVEAG--AQ-GEHKIQR 436 (468)
Q Consensus 369 ~~dg~~VA~~l~l~~g~~--l~~~y~-G~~~~~~~~~L~~-~ll~~----~~I~~Aie~G~~-~~d~G--~~-~e~K~~~ 436 (468)
..+|+|+|+.+++..... ++.-|. |+.+. +...+.. .++.| .+.+.|.++|.+ +|.|| .- .++|.+|
T Consensus 209 fl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dp-e~~~~spGSIL~WlNi~~A~~~~~~~~K~lrfSfG~~r~~~~YK~RW 287 (298)
T PRK15312 209 YIEGIPCAFDIVLKSESQMNVYFDVPNGAVKN-ECMPLSPGSILMWLNISRARHYCQERQKKLIFSIGILKPEWEYKRMW 287 (298)
T ss_pred EECCcceEEEEEEEecCCCcEEEecccCccCc-ccccCCCccEEEEecHHHHHHHHHhcCCcEEEEecCCCCChhHHhhc
Confidence 889999999999987653 222232 33432 1222211 23344 455666667765 45788 43 4788887
Q ss_pred cccceee
Q 046351 437 GYLPVTT 443 (468)
Q Consensus 437 G~~p~~~ 443 (468)
|.|.|+
T Consensus 288 -c~~~pv 293 (298)
T PRK15312 288 -STPYFT 293 (298)
T ss_pred -Cccccc
Confidence 555554
No 13
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=96.18 E-value=0.011 Score=54.14 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=78.0
Q ss_pred hhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhcc-CCeEEEEEeec
Q 046351 292 MKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKM-KDQVLLVVAED 370 (468)
Q Consensus 292 lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l-~~~~~l~~a~~ 370 (468)
.+++.||.+|| ..++|++ ...+++.++.-.+... ...-..+++++.+...+.- .+.++=+-++.
T Consensus 41 iskslrk~lr~-------~~~~v~~-------n~~F~~Vi~~Ca~~~~-~~~~TWI~~~~~~aY~~Lh~~G~aHSvEvw~ 105 (173)
T PF03588_consen 41 ISKSLRKFLRK-------GRFTVTI-------NTAFEEVIRACAEPRR-GQDGTWITPEMIEAYTELHELGYAHSVEVWQ 105 (173)
T ss_dssp --HHHHHHHHT--------SEEEEE-------SS-HHHHHHHHHTSS---STGTTS-HHHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCHHHHHHhCC-------CCeEEEE-------CCCHHHHHHHHccCCC-CCCCCCcCHHHHHHHHHHHHcCeeEEEeeec
Confidence 56666666665 3466665 2466777776666543 2222345565543322211 24556666778
Q ss_pred CCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccccccccccccccccee
Q 046351 371 GDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQGEHKIQRGYLPVT 442 (468)
Q Consensus 371 dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~e~K~~~G~~p~~ 442 (468)
++++||+.+.+.-|...++ ..+... .+ -...+.++..+++..+.|+..+|.+...+|+.++|+...+
T Consensus 106 ~~~LvGGlyGv~iG~~F~G-ESMFs~---~~-~ASKval~~L~~~L~~~g~~liD~Q~~~~hl~slGa~~i~ 172 (173)
T PF03588_consen 106 GGELVGGLYGVAIGGVFFG-ESMFSR---VS-NASKVALVALVEHLRQCGFQLIDCQMPTPHLASLGAKEIP 172 (173)
T ss_dssp TTEEEEEEEEEEETTEEEE-EEEEES---ST-THHHHHHHHHHHHHHHTT--EEEEES--HHHHHTTEEEE-
T ss_pred CCeeEEeeeCEEECCEEEe-cccccc---CC-ChHHHHHHHHHHHHHHCCCcEEEeccCCHHHHhcCCEeCC
Confidence 9999999999998886554 222221 11 1234567888999999999999999999999999998654
No 14
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=95.93 E-value=0.025 Score=54.73 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=77.6
Q ss_pred hhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCC
Q 046351 293 KQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGD 372 (468)
Q Consensus 293 ssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg 372 (468)
+++.|+.+||. +++++++... ..+ +.--++|+-|.......++-...+.+.|..+...-.....++..+.+|
T Consensus 82 srsqrR~lkrn------~dl~v~~~~~-~~~-~E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g 153 (240)
T PRK01305 82 SRSQRRVLKRN------ADLVVRVLPP-EFT-EEHYALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVNTRFIEFRGDG 153 (240)
T ss_pred CHHHHHHHhhc------cCeEEEEcCC-CCC-HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCcEEEEEEeCC
Confidence 45555556552 3466665432 222 234466666666555544544556777888776644445666777899
Q ss_pred ccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccccc
Q 046351 373 ELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 373 ~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
++||.+++=+-.+-+.+.|.=..++....+|- ..+....|++|.+.|++.+-+|--
T Consensus 154 ~LiaVav~D~l~d~lSAVY~FyDPd~~~~SLG-~~~iL~qI~~ak~~gl~y~YLGY~ 209 (240)
T PRK01305 154 KLVAVAVTDVLDDGLSAVYTFYDPDEEHRSLG-TFAILWQIELAKRLGLPYVYLGYW 209 (240)
T ss_pred eEEEEEEEeccCCceeeEEEeeCCCccccCCH-HHHHHHHHHHHHHcCCCeEeeeEE
Confidence 99999988777765554442222211112221 123456889999999999999975
No 15
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=95.82 E-value=0.021 Score=56.20 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhccceee-----------cC------CCCCChHHHHHhh
Q 046351 230 IDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQYHW-----------RN------RNYKNFDEFLMDM 292 (468)
Q Consensus 230 ~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~~~~~-----------~~------~~~~s~deyla~l 292 (468)
...++..+.++|+++|..-+.. +++.+..+.|...||...-.++-.+ ++ ..+...++.+..-
T Consensus 23 ~~~~~~~~~~~a~~~~~~ki~~-~~~~~~~~~~~~~g~~~e~~i~~~f~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 101 (266)
T TIGR03827 23 VEALIPDLDALAKKEGYTKIIA-KVPGSDKPLFEERGYLEEAKIPGYFNGHDAYFMSKYLDEDRRISSHSEKEDEVLEAA 101 (266)
T ss_pred HHHHHHHHHHHHHHcCCcEEEE-EccHHHHHHHHHCCCeEEEecccccCCCceEEEEEcCchHhCCCCcHHHHHHHHHHH
Confidence 4578888999999999888755 4455566778888887653222111 00 0111234444433
Q ss_pred hhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCC
Q 046351 293 KQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGD 372 (468)
Q Consensus 293 ssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg 372 (468)
.++.++..- ....++.++.++ .++++.+.+||.+++.. ...+..+++|+....+ +....++++.+|
T Consensus 102 ~~~~~~~~~-----~~~~~~~IR~a~-----~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~---~~~~~~v~~~~g 167 (266)
T TIGR03827 102 LSKPRKPKI-----ALPEGFTLRIAT-----EDDADAMAALYRKVFPT-YPFPIHDPAYLLETMK---SNVVYFGVEDGG 167 (266)
T ss_pred HhccCCCcc-----CCCCceEEEECC-----HHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc---CCcEEEEEEECC
Confidence 233111110 012346666543 46788999999887643 2334445666665533 344566778899
Q ss_pred ccccccccccc-c-ccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccc
Q 046351 373 ELVAGALNLIG-G-DSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEA 426 (468)
Q Consensus 373 ~~VA~~l~l~~-g-~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~ 426 (468)
++||++.+-.. . +..+-......+.....++ -..++-.++++|.++|++.+-.
T Consensus 168 ~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~Gi-G~~Ll~~l~~~a~~~g~~~l~~ 222 (266)
T TIGR03827 168 KIIALASAEMDPENGNAEMTDFATLPEYRGKGL-AKILLAAMEKEMKEKGIRTAYT 222 (266)
T ss_pred EEEEEEEEecCCCCCcEEEEEEEECHHHcCCCH-HHHHHHHHHHHHHHCCCcEEEe
Confidence 99998764222 1 1211111122221011222 2344667889999999998754
No 16
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=94.91 E-value=0.1 Score=50.01 Aligned_cols=130 Identities=14% Similarity=0.221 Sum_probs=83.0
Q ss_pred hhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHH---HHHhhhccCCeEEEEEe
Q 046351 292 MKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDF---FHDMGSKMKDQVLLVVA 368 (468)
Q Consensus 292 lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~F---f~~L~~~l~~~~~l~~a 368 (468)
.+++.||.+|| ..++|++ ..++++.++..+.....+.+ .-++.++ |.+|.+. +.++=+-+
T Consensus 71 isrsl~k~lr~-------~~f~iti-------n~aF~~Vi~~Ca~~~~~~~~-TWI~~e~~~aY~~LH~~--G~AHSVE~ 133 (233)
T PRK00301 71 ISRSLRKTLRK-------SPFRVTV-------DTAFAAVIRACAAPRPGQEG-TWITPEIIEAYLELHEL--GHAHSVEV 133 (233)
T ss_pred cCHHHHHHHcC-------CCeEEEE-------cccHHHHHHHHccCCCCCCC-CCCCHHHHHHHHHHHHc--CceEEEEE
Confidence 34444444443 3466765 24567777766654322222 2344443 3444442 44555667
Q ss_pred ecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccccccccccccccccceee
Q 046351 369 EDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQGEHKIQRGYLPVTT 443 (468)
Q Consensus 369 ~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~e~K~~~G~~p~~~ 443 (468)
+.+|++||+.+.+.-|+..+|. +... .. .-...+.++..+++..+.|+..+|....++|+.++|+...+-
T Consensus 134 W~~~~LvGGlYGv~iG~~F~GE--SMFs--~~-~nASKvAl~~L~~~L~~~g~~liD~Q~~t~HL~slGa~~i~R 203 (233)
T PRK00301 134 WQGGELVGGLYGVALGRAFFGE--SMFS--RA-TDASKVALAALVEHLRRHGFKLIDCQVLNPHLASLGAREIPR 203 (233)
T ss_pred EECCEEEeeeeccccCCEEeec--cccc--CC-CChHHHHHHHHHHHHHHCCceEEEECCCCHHHHhcCCEEcCH
Confidence 8899999999999988765442 1111 11 112345678899999999999999999999999999887764
No 17
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=93.44 E-value=0.25 Score=45.67 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=81.3
Q ss_pred hhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhH---HHHHhhhccCCeEEEEEe
Q 046351 292 MKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRD---FFHDMGSKMKDQVLLVVA 368 (468)
Q Consensus 292 lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~---Ff~~L~~~l~~~~~l~~a 368 (468)
.+++.||.+|+ ...+|++ ...+++.++.-++. |+.+ .-++++ -|.+|.+. +.++=+-+
T Consensus 43 vsrsL~k~lr~-------~~f~vti-------n~~F~~Vi~~Ca~~--r~~g-TWI~~e~~~aY~~LH~~--G~AHSvEv 103 (185)
T TIGR00667 43 IARSMKRFLKR-------SPYRVSV-------NYAFGQVIEGCASD--RPEG-TWISDELVEAYHRLHEL--GHAHSFEV 103 (185)
T ss_pred cCHHHHHHHcC-------CCeEEEE-------cCcHHHHHHHHcCC--CCCC-CCCCHHHHHHHHHHHHh--CceEEEEE
Confidence 34444444443 3466665 24567777666542 2222 223333 34445442 34555666
Q ss_pred ecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccccccccccccccccceee
Q 046351 369 EDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQGEHKIQRGYLPVTT 443 (468)
Q Consensus 369 ~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~e~K~~~G~~p~~~ 443 (468)
+.+|++||+.+.+.-|+..+|. +... ..+ -...+.+...+++..+.|+..+|....++|..++|+...+-
T Consensus 104 w~~~~LvGGlYGv~iG~~F~GE--SMFs--~~~-nASKvAl~~L~~~L~~~g~~liDcQ~~t~HL~slGa~ei~R 173 (185)
T TIGR00667 104 WQGDELVGGMYGIAQGGLFCGE--SMFS--RMT-NASKTALLVFCEHFIRHGGQLIDCQVQNPHLASLGAYEVPR 173 (185)
T ss_pred EECCEEEEeeeeeeeCCeEEec--cccc--cCC-ChhHHHHHHHHHHHHHCCCcEEEECCCCHHHHhcCCEEcCH
Confidence 7899999999999888765442 1111 111 12345678899999999999999999999999999887763
No 18
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=92.73 E-value=0.37 Score=42.09 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=67.8
Q ss_pred hHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccccccccccccccCCCccCCCcchhhh
Q 046351 329 SFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEAC 408 (468)
Q Consensus 329 ~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll 408 (468)
++++-|.......++...-+++-|..+...-......+..+.+|++||.+++=.-.+-+.+.|.=..++....+|- ...
T Consensus 5 ~Ly~rY~~~rH~~~~~~~~~~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fyDPd~~~~SlG-~~~ 83 (128)
T PF04377_consen 5 ELYERYQMARHPDGDMDPPSQEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFYDPDYSKRSLG-TYS 83 (128)
T ss_pred HHHHHHHHHhCCCCCCCCcCHHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchhhheeeeeCCCccccCcH-HHH
Confidence 4455555554443333333356667766654555667778899999999988777776655552222210111221 123
Q ss_pred HHHHHHHHHhccccccccccc--c--cccccccccceee
Q 046351 409 YYQAIEAAIELSLSAVEAGAQ--G--EHKIQRGYLPVTT 443 (468)
Q Consensus 409 ~~~~I~~Aie~G~~~~d~G~~--~--e~K~~~G~~p~~~ 443 (468)
....|++|.+.|++.+-+|-- + .-..|..+.|...
T Consensus 84 iL~eI~~a~~~~l~y~YLGY~I~~c~kM~YK~~f~P~e~ 122 (128)
T PF04377_consen 84 ILREIELARELGLPYYYLGYWIHGCPKMNYKARFRPHEL 122 (128)
T ss_pred HHHHHHHHHHcCCCEEeeCeEeCCCCcccchhcCCceee
Confidence 457899999999999999964 2 2233334555543
No 19
>PHA00673 acetyltransferase domain containing protein
Probab=85.10 E-value=1.7 Score=39.18 Aligned_cols=115 Identities=17% Similarity=0.065 Sum_probs=66.2
Q ss_pred ccchhhHhhhhhccCC---CCCCCcchhhHH---HHHhhhccCCeEEEEEeecCCcccccccccccccccc-ccccccCC
Q 046351 324 AKHWDSFYRFYKNTTD---NKWGSPYLTRDF---FHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLF-GRLWGCHP 396 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~---r~~g~~~~~~~F---f~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~-~~y~G~~~ 396 (468)
.++++.+.+|+.+.-- +....+. ..| |+.+.+. ++..+++++.+|++||+..+..-.+-.+ +...+..+
T Consensus 14 ~~D~paI~~LLadd~l~~~r~d~~~~--~~y~~af~ai~~d--p~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 14 LADAPTFASLCAEYAHESANADLAGR--APDHHAYAGMEAA--GVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred HhhHHHHHHHHHhccccccccccccc--chhHHHHHHHHhC--CCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 4678888898877211 1111111 222 4454443 4556788888999999988766553211 10101111
Q ss_pred C----ccCCCcch-hhhHHHHHHHHHhccccccccccc-c----ccccccccccee
Q 046351 397 R----AYYPSLHF-EACYYQAIEAAIELSLSAVEAGAQ-G----EHKIQRGYLPVT 442 (468)
Q Consensus 397 ~----~~~~~L~~-~ll~~~~I~~Aie~G~~~~d~G~~-~----e~K~~~G~~p~~ 442 (468)
. +..++-.. ..++-.++++|.++||..+-.-.+ + +|=.+.||+...
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~ 145 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETN 145 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhc
Confidence 0 11222211 345677999999999999986554 2 577788887653
No 20
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=7.2 Score=36.75 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=83.9
Q ss_pred hhhhhhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhh---HHHHHhhhccCCeEEEEEe
Q 046351 292 MKQNKRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTR---DFFHDMGSKMKDQVLLVVA 368 (468)
Q Consensus 292 lssk~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~---~Ff~~L~~~l~~~~~l~~a 368 (468)
.+++.||.+|+ .-++|++ ...+++.++..+.+...+.++ .++. +-|..|.+. +.++=+-+
T Consensus 64 v~rsl~k~lr~-------~~~~v~~-------n~aF~~Vi~~CA~~~~~r~~T-WI~~~~~~aY~~Lh~~--G~AHSvE~ 126 (221)
T COG2360 64 ISRSLKKFLRQ-------SPYRVRV-------NYAFAAVIEGCAATRPPRDGT-WINDEIREAYHKLHEM--GHAHSVEV 126 (221)
T ss_pred ccHHHHHHHcc-------CCeEEEe-------chhHHHHHHHHhccCCCCCCc-ccCHHHHHHHHHHHHh--ccceeEEE
Confidence 35555555554 2366665 246677777777765322222 2232 334445442 45566778
Q ss_pred ecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccccccccccccccccceee
Q 046351 369 EDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQGEHKIQRGYLPVTT 443 (468)
Q Consensus 369 ~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~e~K~~~G~~p~~~ 443 (468)
+.++++||+.+.+.-|...+|. +... ..++ ...+++...++.-..+|+..+|.-..++|-.+.|+...+-
T Consensus 127 W~gdeLvGGlYGvalG~~F~GE--SMFs--r~~n-ASKialv~lv~~L~~~g~~LiD~Q~~n~HL~~~GA~~ipr 196 (221)
T COG2360 127 WQGDELVGGLYGVALGRAFFGE--SMFS--RATN-ASKIALVHLVEHLRRHGFVLIDCQVLNEHLASLGAYEIPR 196 (221)
T ss_pred eeCCeeehhhhhhhhcceeech--hhhh--cCCC-chHHHHHHHHHHHHhcCceEEeeecCCHHHHhcCCeecCH
Confidence 8999999999999888764431 1111 1111 2346678899999999999999999999999999877763
No 21
>PHA00673 acetyltransferase domain containing protein
Probab=74.23 E-value=12 Score=33.70 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=52.7
Q ss_pred eeeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHH
Q 046351 156 CHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIIS 235 (468)
Q Consensus 156 ~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~ 235 (468)
..+++++ +|++||.+-+.+.... ...+ .++.-+. .+.++++....-+-.+|++
T Consensus 56 ~llVa~~-~g~vVG~~~l~~~p~l--------------~~~~----------~~~~~Ie--~l~V~~~~RGqGIG~~Ll~ 108 (154)
T PHA00673 56 HFLGVFR-GEELVGFACLLVTPVP--------------HFKG----------QLIGTTE--SIFVAAAHRPGGAGMALLR 108 (154)
T ss_pred EEEEEEE-CCEEEEEEEEEEecCC--------------ccCC----------ccEEEEE--EEEEChhccCCCHHHHHHH
Confidence 3466776 7999999999876411 0000 0100011 1345555544556778999
Q ss_pred HHHHhhhhcccceeEEecCC-hhhhhhhcccchh
Q 046351 236 AMKDLTAKSRVSSLHITFPS-ENEWHKLGEKGFL 268 (468)
Q Consensus 236 al~~la~~~~~~~~~l~~~~-~~~~~~l~~~G~~ 268 (468)
..++.|++.|+..+.+.-.| ...++-+...|+.
T Consensus 109 ~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~ 142 (154)
T PHA00673 109 ATEALARDLGATGLYVSGPTEGRLVQLLPAAGYR 142 (154)
T ss_pred HHHHHHHHCCCCEEEEecCCCccchHHHHhCCch
Confidence 99999999999988885333 3455555556654
No 22
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=73.83 E-value=43 Score=32.75 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=61.1
Q ss_pred cccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHH-hhhc-cCCeEEEEEeec--CCccccccccccccc
Q 046351 310 QNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHD-MGSK-MKDQVLLVVAED--GDELVAGALNLIGGD 385 (468)
Q Consensus 310 ~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~-L~~~-l~~~~~l~~a~~--dg~~VA~~l~l~~g~ 385 (468)
.|++++.++.. .+...+.++....+.........+.+.+.. .... +.+.. ++++.. +|++||+.......+
T Consensus 148 ~g~~~r~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~vG~~~~~~~~~ 222 (292)
T TIGR03448 148 DGVTVRAYVGA----PDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAG-LFLAFDDAPGELLGFHWTKVHPD 222 (292)
T ss_pred CCeEeeccCCC----cchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCc-eEEEEECCCCcEEEEEEEEecCC
Confidence 58888765422 233455555544443211101122222222 1111 22222 344554 689999864433322
Q ss_pred c--ccccc-cccCCCccCCCcchhhhHHHHHHHHHhcccccccccccc------cccccccccceee
Q 046351 386 S--LFGRL-WGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQG------EHKIQRGYLPVTT 443 (468)
Q Consensus 386 ~--l~~~y-~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~------e~K~~~G~~p~~~ 443 (468)
. ....+ .+..+.....++- ..++-++++++.+.|++.+.+.... .+=.+.|+++...
T Consensus 223 ~~~~~~i~~~~V~p~~rg~GiG-~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 223 EPALGEVYVVGVDPAAQGRGLG-DALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred CCceeEEEEEEECHHHcCCCHH-HHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 1 11011 1222211122332 3446788999999999888765431 2334778877664
No 23
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=9.2 Score=36.99 Aligned_cols=100 Identities=21% Similarity=0.119 Sum_probs=58.4
Q ss_pred hHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEee------cCCccccccccccccccccccccccCCCccCCC
Q 046351 329 SFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAE------DGDELVAGALNLIGGDSLFGRLWGCHPRAYYPS 402 (468)
Q Consensus 329 ~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~------~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~ 402 (468)
++++-|.......+|-...+..=|..+...-.-+..++-.+ .+|++||.++.=+-.+-+...|.=..++....+
T Consensus 111 ~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~dGlSsVY~FydPd~s~~S 190 (253)
T COG2935 111 ELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLPDGLSSVYTFYDPDMSKRS 190 (253)
T ss_pred HHHHHHHHHHcccCCCCCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeecccCcceeEEEEeCCChhhhc
Confidence 45555555555556666556555566666544455666665 489999998854444433332311122111223
Q ss_pred cchhhhHHHHHHHHHhccccccccccc
Q 046351 403 LHFEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 403 L~~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
|-. +....-|.+|.+.|+..+-||--
T Consensus 191 LGt-~~iL~~I~~aq~~~l~yvYLGYw 216 (253)
T COG2935 191 LGT-LSILDQIAIAQRLGLPYVYLGYW 216 (253)
T ss_pred chH-HHHHHHHHHHHHhCCCeEEEEEE
Confidence 311 22345678899999999999964
No 24
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=69.52 E-value=13 Score=35.48 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred cccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEee-cCCcccccccccccc---c-c
Q 046351 312 LTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAE-DGDELVAGALNLIGG---D-S 386 (468)
Q Consensus 312 v~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~-~dg~~VA~~l~l~~g---~-~ 386 (468)
+.|+.+.+ ...++++.++....|... ....++++-+..|.. .+. .++-|+ .||++||.++.+-.. + .
T Consensus 3 vvvrrl~d----p~el~~~~dV~~~aWg~~-d~~~~~~d~i~al~~--~GG-lvlgAf~~dg~lVGls~G~pg~r~g~~y 74 (266)
T COG3375 3 VVVRRLTD----PAELDEAEDVQASAWGSE-DRDGAPADTIRALRY--HGG-LVLGAFSADGRLVGLSYGYPGGRGGSLY 74 (266)
T ss_pred eeEEecCC----HHHHHHHHHHHHHHhCcc-ccccchHHHHHHHHh--cCC-eEEEEEcCCCcEEEEEeccCCcCCCcee
Confidence 45555553 467888888888888532 233344454543322 233 445554 566999999988722 2 2
Q ss_pred ccccccccCCCccCCCcchhhhHHHHHHHHHhcccccc
Q 046351 387 LFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAV 424 (468)
Q Consensus 387 l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~ 424 (468)
+|.+..|..+...+.++-+. +-...-++|.+.|++.+
T Consensus 75 ~ySH~~gV~e~~k~sglg~a-LK~~Qre~a~~~G~tli 111 (266)
T COG3375 75 LYSHMLGVREEVKGSGLGVA-LKMKQRERALSMGYTLI 111 (266)
T ss_pred eeeeehhccccccccchhhh-hHHHHHHHHHhcCeeeE
Confidence 44455554432122333222 23456789999999865
No 25
>PRK01346 hypothetical protein; Provisional
Probab=68.93 E-value=33 Score=35.68 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=76.1
Q ss_pred EEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhccceeecCCCCCChHHHHHhhhhhhh
Q 046351 218 ILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQYHWRNRNYKNFDEFLMDMKQNKR 297 (468)
Q Consensus 218 ~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~s~deyla~lssk~R 297 (468)
+.+.|+....-+..+|++.+.+.+++.|...+.+. +.. ...++..||.......... ++..+. .+...
T Consensus 85 v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~-~~~--~~~Y~r~Gf~~~~~~~~~~--i~~~~~-----~~~~~-- 152 (411)
T PRK01346 85 VTVAPTHRRRGLLTALMREQLRRIRERGEPVAALT-ASE--GGIYGRFGYGPATYSQSLS--VDRRRA-----RLRPD-- 152 (411)
T ss_pred EEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEE-CCc--hhhHhhCCCeeccceEEEE--Eccccc-----ccCCC--
Confidence 34566665666788899999898988887554442 221 2346677886443221111 111100 00000
Q ss_pred hhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccC------CeEEEEEeecC
Q 046351 298 KNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMK------DQVLLVVAEDG 371 (468)
Q Consensus 298 k~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~------~~~~l~~a~~d 371 (468)
.....++++ +.. .+..+.+.++|.+...+..|...++.++++....... +...+.+.+.+
T Consensus 153 --------~~~~~~v~~--~~~----~~~~~~l~~~y~~~~~~~~G~~~R~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (411)
T PRK01346 153 --------VPDGGRVRL--VDP----AEARDLLPAVYERWRRARPGALSRPPAWWDDVLADRESRRGGGSPLRALVHPDD 218 (411)
T ss_pred --------CCCCCceEE--cCH----HHHHHHHHHHHHHhhccCCCcccCChHHHHHHhcCcccccCCCCccEEEEEcCC
Confidence 001123333 221 1346778888887766656666677777766443321 12334444558
Q ss_pred Ccccccccccccc
Q 046351 372 DELVAGALNLIGG 384 (468)
Q Consensus 372 g~~VA~~l~l~~g 384 (468)
|++.|..++-..+
T Consensus 219 g~~~Gy~~y~~~~ 231 (411)
T PRK01346 219 GEVDGYALYRVDD 231 (411)
T ss_pred CcccEEEEEEEcC
Confidence 9999998766644
No 26
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=66.16 E-value=10 Score=32.52 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=58.3
Q ss_pred ccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhcc-CCeEEEEEeecCCccccccccccccc------c--cccccccc
Q 046351 324 AKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKM-KDQVLLVVAEDGDELVAGALNLIGGD------S--LFGRLWGC 394 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l-~~~~~l~~a~~dg~~VA~~l~l~~g~------~--l~~~y~G~ 394 (468)
.++++.+++++.+........ ..+...+.+.+ .++..+++++.+|++||+..+..... . +...+ .
T Consensus 11 ~~D~~~l~~l~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~--v 84 (144)
T PRK10146 11 QYDTDAVYALICELKQAEFDH----QAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELV--V 84 (144)
T ss_pred HhhHHHHHHHHHHHhcccCCH----HHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeE--E
Confidence 467788888877644322211 12222222222 23345567888999999876543211 1 11111 1
Q ss_pred CCCccCCCcchhhhHHHHHHHHHhccccccccccc--c----ccccccccccee
Q 046351 395 HPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ--G----EHKIQRGYLPVT 442 (468)
Q Consensus 395 ~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~--~----e~K~~~G~~p~~ 442 (468)
.+.....++ -..++-+++++|.++|++.+.+-.. . .+=.+.|+.+..
T Consensus 85 ~p~~rg~Gi-G~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 85 MPQARGLNV-GSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred CHHHcCCCH-HHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 111011222 2345678999999999988865432 1 244566776553
No 27
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=64.53 E-value=7.1 Score=32.14 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=35.1
Q ss_pred EEEEEeecCCccccccccccccccccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccc
Q 046351 363 VLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAG 427 (468)
Q Consensus 363 ~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G 427 (468)
..+++++.+|++||++.+- .++.+...|. .+.....++ -..++-.+++++.+ |++.+.+-
T Consensus 44 ~~~~v~~~~~~ivG~~~~~-~~~~i~~l~v--~p~~r~~Gi-g~~Ll~~~~~~~~~-~~~~l~~~ 103 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE-PDGEISHLYV--LPEYRGRGI-GRALLDAAEKEAKD-GIRRLTVE 103 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE-TCEEEEEEEE---GGGTTSSH-HHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CEEEEEEECCEEEEEEEEc-CCCeEEEEEE--ChhhcCCcH-HHHHHHHHHHHHHc-CCcEEEEE
Confidence 4678899999999998864 3444433222 221011222 23445667777755 88877654
No 28
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=59.93 E-value=46 Score=30.20 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=54.9
Q ss_pred CccceeeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHH
Q 046351 152 GWTPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVID 231 (468)
Q Consensus 152 g~~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~ 231 (468)
.|.-.-+++.|+++..||++++-...+.. .+..|+- .+.+++.....-+..
T Consensus 53 ~wp~~~~~a~d~~~~~VGai~ck~~~~r~---------------~~rgyi~--------------mLaV~~e~Rg~GIg~ 103 (165)
T KOG3139|consen 53 NWPCFCFLALDEKGDTVGAIVCKLDTHRN---------------TLRGYIA--------------MLAVDSEYRGQGIGK 103 (165)
T ss_pred CCceEEEEEEcCCCceEEEEEEeccccCC---------------cceEEEE--------------EEEechhhccccHHH
Confidence 45444567777556589999887543220 0000100 223444444455677
Q ss_pred HHHHHHHHhhhhcccceeEEecC--Chhhhhhhcccchhh
Q 046351 232 VIISAMKDLTAKSRVSSLHITFP--SENEWHKLGEKGFLQ 269 (468)
Q Consensus 232 aL~~al~~la~~~~~~~~~l~~~--~~~~~~~l~~~G~~~ 269 (468)
+|++.+.+.+++.|++.+.+.-. ..+..+..+..||..
T Consensus 104 aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r 143 (165)
T KOG3139|consen 104 ALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKR 143 (165)
T ss_pred HHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceE
Confidence 89999999999999999888432 234556677889865
No 29
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=59.17 E-value=19 Score=38.97 Aligned_cols=130 Identities=13% Similarity=0.220 Sum_probs=78.4
Q ss_pred cCcceeccCCCCCccc--CCCCcceEEEEeeeeccccCcCcccccccCCCCCCCCCcchhhhhhc---cccccccccccc
Q 046351 77 LGDFTLTGSGSEGVAE--NDGGPKKICLSVISSISEVSANDWDTCALDATGPEKFNPFLTHGFLS---SLEETGCAVKET 151 (468)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~l~v~~~~si~~i~~~~Wd~l~~~~~~p~~~~~F~s~~wL~---~~e~~~~~~~~~ 151 (468)
..+|+++|..-.++-+ +-...+.+++++++ .++.+++++++.+- |-+|+. ..|+....+
T Consensus 320 l~~Fsl~Gk~~~~~R~a~~r~~r~G~tfeI~~--~~~~~~~l~eL~~i-----------SD~Wl~~~~~rEkgFsLG--- 383 (538)
T COG2898 320 LANFSLSGKRMRGLRQAVNRADREGLTFEIVP--PDQSPAELDELRAI-----------SDEWLDHKTRREKGFSLG--- 383 (538)
T ss_pred hhhccccCcccccHHHHHHHHHhcCcEEEEeC--CccChHHHHHHHHh-----------CHHhhhcCCcccceeecc---
Confidence 3568999986655544 34467779999998 67777789998875 346763 334433222
Q ss_pred Cccce-----eeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCchh
Q 046351 152 GWTPC-----HIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIK 226 (468)
Q Consensus 152 g~~~~-----~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~ 226 (468)
.++|. .+.+.|.+|+++|.++++...... .+-+| ++ -.+++. +
T Consensus 384 ~fdp~yl~~~~va~~~~~g~VvaFa~l~~~~~~~-~~SlD-----------------lM-------------R~sp~a-p 431 (538)
T COG2898 384 FFDPRYLDIFPVAAVDNEGEVVAFANLMPTGGKE-GYSLD-----------------LM-------------RRSPDA-P 431 (538)
T ss_pred CCCccccccceeeEEcCCCCeEEEEeecccCCcc-eeEEE-----------------ee-------------ecCCCC-C
Confidence 12333 345566678899999999542110 00001 00 011221 2
Q ss_pred HHHHHHHHHHHHHhhhhcccceeEEecC
Q 046351 227 DQVIDVIISAMKDLTAKSRVSSLHITFP 254 (468)
Q Consensus 227 ~~~~~aL~~al~~la~~~~~~~~~l~~~ 254 (468)
.-+.+.|...+...+|++|.....+-+.
T Consensus 432 ~g~mdfLf~~li~~aKe~G~~~fsLgmA 459 (538)
T COG2898 432 NGTMDFLFSELILWAKEEGYQRFSLGMA 459 (538)
T ss_pred chHHHHHHHHHHHHHHHcCCeEEecCCc
Confidence 3356788888999999999887666443
No 30
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=58.31 E-value=40 Score=34.36 Aligned_cols=69 Identities=7% Similarity=0.035 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhhccc--eeecCCCCCChHHHHHhhhhhh
Q 046351 227 DQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRIGMQ--YHWRNRNYKNFDEFLMDMKQNK 296 (468)
Q Consensus 227 ~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~~~~--~~~~~~~~~s~deyla~lssk~ 296 (468)
..+...|+.++.+.+++.|...+.+.- .+.....++..||....... ...+.....++++|+++|.+..
T Consensus 65 ~Glg~~L~~~L~~~a~~~G~~~l~l~T-k~~~~~fy~klGF~~i~~~~~~~v~mE~~~~~~~~y~~~l~~~~ 135 (332)
T TIGR00124 65 EGLALQLMTELENLAYELGRFHLFIFT-KPEYAALFEYCGFKTLAEAKDQGVLLENSATRLKRYCSTLPKPR 135 (332)
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEE-CchHHHHHHHcCCEEeeeecceEEEEeccCcCHHHHHHHHHHhc
Confidence 345568889999999999877766532 22224567888987654332 1233345688999999997544
No 31
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=57.90 E-value=19 Score=31.32 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=65.5
Q ss_pred ccchhhHhhhhhccCCCC-CCCc--chhhHHHHHhhhcc---CCeEEEEEeecCCcccccccccccccc---c-cccccc
Q 046351 324 AKHWDSFYRFYKNTTDNK-WGSP--YLTRDFFHDMGSKM---KDQVLLVVAEDGDELVAGALNLIGGDS---L-FGRLWG 393 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~-~g~~--~~~~~Ff~~L~~~l---~~~~~l~~a~~dg~~VA~~l~l~~g~~---l-~~~y~G 393 (468)
.++++.+..++....... .... ..+.+.++...+.. .....+++...+|++||...+-..... . .+.++.
T Consensus 6 ~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~~~v~ 85 (155)
T PF13420_consen 6 EEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAELSIYVS 85 (155)
T ss_dssp GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEEeeEEC
Confidence 467777788776532211 1221 12345555555543 334444444569999999876543321 1 111222
Q ss_pred cCCCccCCCcchhhhHHHHHHHH-Hhcccccccccccc------cccccccccceeeee
Q 046351 394 CHPRAYYPSLHFEACYYQAIEAA-IELSLSAVEAGAQG------EHKIQRGYLPVTTYS 445 (468)
Q Consensus 394 ~~~~~~~~~L~~~ll~~~~I~~A-ie~G~~~~d~G~~~------e~K~~~G~~p~~~ys 445 (468)
.+. ...++ -..++-.++++| .+.|++++.+..-. .+-.+.|++......
T Consensus 86 -~~~-~~~gi-g~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 86 -PDY-RGKGI-GRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp -GGG-TTSSH-HHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred -hhH-CCCcH-HHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 110 11222 234567889999 99999999876542 367788988876543
No 32
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=55.58 E-value=28 Score=31.97 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=61.5
Q ss_pred cchhhHhhhhhccCCC-CCCCcc----hhhHHHHHhhhc-c-C--CeEEEEEeecCCccccccccccccc-ccccccccc
Q 046351 325 KHWDSFYRFYKNTTDN-KWGSPY----LTRDFFHDMGSK-M-K--DQVLLVVAEDGDELVAGALNLIGGD-SLFGRLWGC 394 (468)
Q Consensus 325 ~~ld~f~~Ly~~t~~r-~~g~~~----~~~~Ff~~L~~~-l-~--~~~~l~~a~~dg~~VA~~l~l~~g~-~l~~~y~G~ 394 (468)
++++.+.+++...... .+..+. ....+++..... . + +...+++...+|++||+..+-..++ ..+..+.+.
T Consensus 55 ~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V 134 (194)
T PRK10975 55 TDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAV 134 (194)
T ss_pred ccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEE
Confidence 4666777776654221 111111 122455443322 1 1 2222333456789999876543332 221112222
Q ss_pred CCCccCCCcchhhhHHHHHHHHHhccccccccccc--c----cccccccccceeeee
Q 046351 395 HPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ--G----EHKIQRGYLPVTTYS 445 (468)
Q Consensus 395 ~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~--~----e~K~~~G~~p~~~ys 445 (468)
.+.....++- ..++-.++++|.+.|++++.++.. + .+=.+.|+++...+.
T Consensus 135 ~p~~rg~Gig-~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 135 FPGAQGRGIG-ARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred ChhhcCCCHH-HHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 2211122222 234677999999999999987753 2 233478999887654
No 33
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=53.06 E-value=37 Score=31.17 Aligned_cols=120 Identities=11% Similarity=0.069 Sum_probs=62.7
Q ss_pred ccchhhHhhhhhccCCC-CCCCcch----hhHHHHHhhhcc----CCeEEEEEeecCCcccccccccccc-ccccccccc
Q 046351 324 AKHWDSFYRFYKNTTDN-KWGSPYL----TRDFFHDMGSKM----KDQVLLVVAEDGDELVAGALNLIGG-DSLFGRLWG 393 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r-~~g~~~~----~~~Ff~~L~~~l----~~~~~l~~a~~dg~~VA~~l~l~~g-~~l~~~y~G 393 (468)
.++++.+.+++...... ....+.. ...++....... .+...+++++.+|++||+..+...+ +..+-.+++
T Consensus 51 ~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~~~~i~~l~ 130 (191)
T TIGR02382 51 ETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDTDARIGLLA 130 (191)
T ss_pred hhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCCceEEEEEE
Confidence 45677888887765321 1111111 124444332221 1233344556789999987664332 221111222
Q ss_pred cCCCccCCCcchhhhHHHHHHHHHhccccccccccc--c----cccccccccceeee
Q 046351 394 CHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ--G----EHKIQRGYLPVTTY 444 (468)
Q Consensus 394 ~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~--~----e~K~~~G~~p~~~y 444 (468)
..+.....++- ..++-.++++|.+.|++.+.+... + .+=.+.|+..+...
T Consensus 131 V~p~~rGkG~G-~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 131 VFPGAQSRGIG-AELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ECHHHcCCCHH-HHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 22211122332 233567899999999999987643 2 24448898877653
No 34
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=52.66 E-value=20 Score=31.28 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=59.5
Q ss_pred ccchhhHhhhhhccCCCCC----CCcchhhHHHHHhhhccCCeEEEEEeecCCcccccccccc-------ccc-cccccc
Q 046351 324 AKHWDSFYRFYKNTTDNKW----GSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLI-------GGD-SLFGRL 391 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~----g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~-------~g~-~l~~~y 391 (468)
.++++.+++++.+-..+.+ ........+.+.+. ..+....+++..+|+++|+..... .+. ..+..+
T Consensus 7 ~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (152)
T PF13523_consen 7 PDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLE--ADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRL 84 (152)
T ss_dssp GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHC--HTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEE
T ss_pred HHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhc--ccCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeee
Confidence 3567777777665432221 11111223333332 234567888999999999987754 111 122223
Q ss_pred cccCCCccCCCcchhhhHHHHHHHHHhc-ccccccccccc------cccccccccceeee
Q 046351 392 WGCHPRAYYPSLHFEACYYQAIEAAIEL-SLSAVEAGAQG------EHKIQRGYLPVTTY 444 (468)
Q Consensus 392 ~G~~~~~~~~~L~~~ll~~~~I~~Aie~-G~~~~d~G~~~------e~K~~~G~~p~~~y 444 (468)
++..+ ....++ -..++-.+|+++.++ |++++-.-... ..-.+.|+++....
T Consensus 85 ~~~~~-~rg~G~-g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~ 142 (152)
T PF13523_consen 85 IVDPE-YRGQGL-GKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEF 142 (152)
T ss_dssp ESTGG-GTTSSH-HHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEE
T ss_pred eechh-hcCCCH-HHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEE
Confidence 33211 012222 233456678888877 67777654432 23447788887753
No 35
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=52.46 E-value=23 Score=29.66 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=59.6
Q ss_pred cccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccc-----cccccccccccCC-
Q 046351 323 KAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIG-----GDSLFGRLWGCHP- 396 (468)
Q Consensus 323 ~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~-----g~~l~~~y~G~~~- 396 (468)
++++++++.+|+...+....... ....++...... + ..++++.+|++||...++.. |.++-..+.+...
T Consensus 6 ~~~d~~~i~~l~~~~F~~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 6 TESDFEQIIELFNEAFGDSESPP-EIWEYFRNLYGP--G--RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -GGGHHHHHHHHHHHTTT-CHHH-HHHHHHHHHHHT--T--EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCCch-hhhhhhhcccCc--C--cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 35788999999999885431111 123444454432 2 45677889999999887655 3322222333221
Q ss_pred -Cc-cCCCcchhhhHHHHHHHHHhcccccccccc-ccccccccccc
Q 046351 397 -RA-YYPSLHFEACYYQAIEAAIELSLSAVEAGA-QGEHKIQRGYL 439 (468)
Q Consensus 397 -~~-~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~-~~e~K~~~G~~ 439 (468)
.+ ...++ ...++-++++.+.++|+...-+-. ...+=.+.|++
T Consensus 81 ~p~~R~~Gl-~~~L~~~~~~~~~~~g~~~~~l~~~~~~~Y~~~G~~ 125 (127)
T PF13527_consen 81 DPEYRGRGL-GRQLMRALLERARERGVPFIFLFPSSPPFYRRFGFE 125 (127)
T ss_dssp -GGGTTSSH-HHHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHTTEE
T ss_pred CHHHcCCCH-HHHHHHHHHHHHHhCCCCEEEEecCChhhhhcCCCE
Confidence 11 11233 334466788888888877554222 22344555554
No 36
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=52.39 E-value=44 Score=36.54 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=69.9
Q ss_pred cccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEee--cCCcccccccccccccc-
Q 046351 310 QNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAE--DGDELVAGALNLIGGDS- 386 (468)
Q Consensus 310 ~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~--~dg~~VA~~l~l~~g~~- 386 (468)
.|++|+.... ..+++.+.+||..... .+ .+.+++..... .....+++++ .+|++||++....+...
T Consensus 81 ~g~~IR~~~~----~~D~~~I~~L~~~~~~----~p-~~~~~~~~~~~--~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~ 149 (547)
T TIGR03103 81 RGFTVRRLRG----PADVDAINRLYAARGM----VP-VRVDFVLDHRH--SRAITYLVAEDEASGAIIGTVMGVDHRKAF 149 (547)
T ss_pred CCcEEEeCCC----hhHHHHHHHHHHhcCC----CC-CCHHHHHHHhc--CCCceEEEEEECCCCeEEEEEEEEeccccc
Confidence 4788876432 3578889998877421 11 22344432211 2223455565 37999999865432211
Q ss_pred --------ccccccccCCCccCCCcchhhhHHHHHHHHHhccccccccccc--c----cccccccccceeeeee
Q 046351 387 --------LFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ--G----EHKIQRGYLPVTTYSC 446 (468)
Q Consensus 387 --------l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~--~----e~K~~~G~~p~~~ys~ 446 (468)
++..| ..+.....++ -..++-++++++.+.|++.+.+... + .+=.+.|++..+.|+.
T Consensus 150 ~d~~~~~~i~~l~--V~P~~Rg~GI-G~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 150 NDPEHGSSLWCLA--VDPQAAHPGV-GEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred cCCCCCeEEEEEE--ECHHHcCCCH-HHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 11111 1111011222 2345778999999999999987654 2 2445789999998875
No 37
>PRK03624 putative acetyltransferase; Provisional
Probab=49.10 E-value=49 Score=27.60 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=58.6
Q ss_pred ccchhhHhhhhhccCCCCCCCcchh-hHHHHHhhhccCCeEEEEEeecCCccccccccccccccccccccccCCCccCCC
Q 046351 324 AKHWDSFYRFYKNTTDNKWGSPYLT-RDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPS 402 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g~~~~~-~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~ 402 (468)
.++++.+.+++...- ...+.-. ...+..... .+....+++..+|++||+......++..+..+....+.....+
T Consensus 10 ~~d~~~i~~l~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~vG~~~~~~~~~~~~i~~i~v~p~~rg~G 84 (140)
T PRK03624 10 QADFEAVIALWERCD---LTRPWNDPEMDIERKLN--HDPSLFLVAEVGGEVVGTVMGGYDGHRGWAYYLAVHPDFRGRG 84 (140)
T ss_pred cccHHHHHHHHHhcC---CCcchhhHHHHHHHHhc--CCCceEEEEEcCCcEEEEEEeeccCCCceEEEEEECHHHhCCC
Confidence 456778887776541 1111111 111222222 1223456778899999987654434332211222222111223
Q ss_pred cchhhhHHHHHHHHHhcccccccccccc------cccccccccceee
Q 046351 403 LHFEACYYQAIEAAIELSLSAVEAGAQG------EHKIQRGYLPVTT 443 (468)
Q Consensus 403 L~~~ll~~~~I~~Aie~G~~~~d~G~~~------e~K~~~G~~p~~~ 443 (468)
+-. .++-.++++|.+.|++.+.+.... .+=.+.|+++...
T Consensus 85 ig~-~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 85 IGR-ALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred HHH-HHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 322 335568888999999988765431 1335678887664
No 38
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=47.66 E-value=32 Score=34.64 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=54.6
Q ss_pred cccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEee---cCCccccccccccccccccc--cccccCCC
Q 046351 323 KAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAE---DGDELVAGALNLIGGDSLFG--RLWGCHPR 397 (468)
Q Consensus 323 ~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~---~dg~~VA~~l~l~~g~~l~~--~y~G~~~~ 397 (468)
+..+++++++|+..+..=.......+.+.+..+... + ...++.+. -++.+||++++...++.++. .+..+.-
T Consensus 193 ~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~-~-~~~~~~~~d~~gd~givG~~~~~~~~~~~~I~~l~vs~r~- 269 (320)
T TIGR01686 193 DEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQK-E-EIVTVSMSDRFGDSGIIGIFVFEKKEGNLFIDDLCMSCRA- 269 (320)
T ss_pred ChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcC-C-CEEEEEEEecCCCCceEEEEEEEecCCcEEEEEEEEcHhH-
Confidence 457899999998876321111223455555555433 2 22222221 25679998876555554321 1222211
Q ss_pred ccCCCcchhhhHHHHHHHHHhccccccccc
Q 046351 398 AYYPSLHFEACYYQAIEAAIELSLSAVEAG 427 (468)
Q Consensus 398 ~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G 427 (468)
...++ -..++-.++++|.+.|++.+.+.
T Consensus 270 -~grGi-g~~Ll~~l~~~a~~~G~~~i~l~ 297 (320)
T TIGR01686 270 -LGRGV-ETRMLRWLFEQALDLGNHNARLY 297 (320)
T ss_pred -hcCcH-HHHHHHHHHHHHHHcCCCeEEEE
Confidence 11122 13456778999999999977654
No 39
>PRK07922 N-acetylglutamate synthase; Validated
Probab=46.71 E-value=35 Score=30.85 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=60.1
Q ss_pred ccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEee-cCCcccccccccccc-cccc
Q 046351 311 NLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAE-DGDELVAGALNLIGG-DSLF 388 (468)
Q Consensus 311 Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~-~dg~~VA~~l~l~~g-~~l~ 388 (468)
+++++.++ .++.+.+.+|+................++... ..+++++ .+|++||+....... +...
T Consensus 5 ~i~iR~a~-----~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~-------~~~~va~~~~~~iiG~~~~~~~~~~~~~ 72 (169)
T PRK07922 5 AITVRRAR-----TSDVPAIKRLVDPYAQGRILLEKNLVTLYEAV-------QEFWVAEHLDGEVVGCGALHVMWEDLAE 72 (169)
T ss_pred CceeecCC-----HhhHHHHHHHHHHHhhcCccccchHHHHHhhc-------CcEEEEEecCCcEEEEEEEeecCCCceE
Confidence 45565533 45677888877653321111111112233321 2355677 889999986543322 2111
Q ss_pred ccccccCCCccCCCcchhhhHHHHHHHHHhcccccccccccc-ccccccccccee
Q 046351 389 GRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQG-EHKIQRGYLPVT 442 (468)
Q Consensus 389 ~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~-e~K~~~G~~p~~ 442 (468)
-......+.....++ -..++-.++++|.++|++.+...... .+=.+.|+.+..
T Consensus 73 i~~l~V~p~~rgkGi-G~~Ll~~~~~~a~~~g~~~l~~~~~~~~fY~k~GF~~~~ 126 (169)
T PRK07922 73 IRTVAVDPAARGRGV-GHAIVERLLDVARELGLSRVFVLTFEVEFFARHGFVEID 126 (169)
T ss_pred EEEEEECHHHhCCCH-HHHHHHHHHHHHHHcCCCEEEEEeccHHHHHHCCCEECc
Confidence 101111111011222 13346678999999999998765443 455566776653
No 40
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=46.17 E-value=48 Score=27.33 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=61.5
Q ss_pred hhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccccccccccccccCCCccCCCcchh
Q 046351 327 WDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSLFGRLWGCHPRAYYPSLHFE 406 (468)
Q Consensus 327 ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~~~~~~~~~L~~~ 406 (468)
+++++++....+.. + .+.+.|..... .+...++++..+|++||+..+-...+..+...++..+.....++- .
T Consensus 2 ~~~i~~~~~~~~~~----~-~~~~~~~~~~~--~~~~~~~~~~~~~~~vg~~~~~~~~~~~~i~~~~v~~~~rg~G~g-~ 73 (131)
T TIGR01575 2 LKAVLEIEAAAFAF----P-WTEAQFAEELA--NYHLCYLLARIGGKVVGYAGVQIVLDEAHILNIAVKPEYQGQGIG-R 73 (131)
T ss_pred HHHHHHHHHhhCCC----C-CCHHHHHHHhc--CCCceEEEEecCCeEEEEEEEEecCCCeEEEEEEECHHHcCCCHH-H
Confidence 45566655444322 2 23344444333 233345566778999999875543332221112222211122332 2
Q ss_pred hhHHHHHHHHHhcccccccccccc------cccccccccceeeeeeeeecCc
Q 046351 407 ACYYQAIEAAIELSLSAVEAGAQG------EHKIQRGYLPVTTYSCHYLLHE 452 (468)
Q Consensus 407 ll~~~~I~~Aie~G~~~~d~G~~~------e~K~~~G~~p~~~ys~~~~~~~ 452 (468)
.++-.+++++.+.|++.+.+.... .+=.+.|+++... ...++.++
T Consensus 74 ~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~-~~~~~~~~ 124 (131)
T TIGR01575 74 ALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI-RRNYYPDP 124 (131)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccc-ccccccCC
Confidence 334567889999898888765431 3567889988865 33445444
No 41
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=45.58 E-value=55 Score=28.29 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhcccccccccccc---ccccccccccee
Q 046351 407 ACYYQAIEAAIELSLSAVEAGAQG---EHKIQRGYLPVT 442 (468)
Q Consensus 407 ll~~~~I~~Aie~G~~~~d~G~~~---e~K~~~G~~p~~ 442 (468)
.++-.++++|.++|++++.+.... .+=.+.|++...
T Consensus 105 ~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g 143 (150)
T PLN02706 105 KIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKE 143 (150)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEeh
Confidence 346679999999999999876542 222355766543
No 42
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=44.52 E-value=62 Score=26.91 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=42.3
Q ss_pred eeeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccCcccCCCeEEeecCchhHHHHHHHHH
Q 046351 156 CHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPFTPVTGPRILLRNTSIKDQVIDVIIS 235 (468)
Q Consensus 156 ~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pftp~~G~~~l~~~~~~~~~~~~aL~~ 235 (468)
.++++.| +|++||.+-++..+... .|.. ++.. .+. .+.++|+.....+...|++
T Consensus 42 ~~~~~~~-~~~ivg~~~~~~~~~~~---------------~g~~-~~~~-------~i~--~v~v~p~~R~~Gl~~~L~~ 95 (127)
T PF13527_consen 42 RCVVAED-DGKIVGHVGLIPRRLSV---------------GGKK-FKAA-------YIG--DVAVDPEYRGRGLGRQLMR 95 (127)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEEEEE---------------TTEE-EEEE-------EEE--EEEE-GGGTTSSHHHHHHH
T ss_pred cEEEEEE-CCEEEEEEEEEEEEEEE---------------CCEE-EEEE-------EEE--EEEECHHHcCCCHHHHHHH
Confidence 4577777 89999999888553210 0100 0000 001 2456666666778889999
Q ss_pred HHHHhhhhcccceeEE
Q 046351 236 AMKDLTAKSRVSSLHI 251 (468)
Q Consensus 236 al~~la~~~~~~~~~l 251 (468)
++.+.+++.+...+.+
T Consensus 96 ~~~~~~~~~g~~~~~l 111 (127)
T PF13527_consen 96 ALLERARERGVPFIFL 111 (127)
T ss_dssp HHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhCCCCEEEE
Confidence 9999999888776544
No 43
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=43.49 E-value=91 Score=25.28 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=26.7
Q ss_pred EeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccch
Q 046351 219 LLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGF 267 (468)
Q Consensus 219 l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~ 267 (468)
.+.|+.....+-.+|++.+.+.+++ +...+.+. ......+.++..||
T Consensus 71 ~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~-~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 71 YVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE-ANERARRFYRKLGF 117 (117)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE-C-HHHHHHHHHTT-
T ss_pred EEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE-eCHHHHHHHHhCCC
Confidence 3444444455667888888888876 77766665 23333344445554
No 44
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=41.16 E-value=32 Score=38.11 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=63.7
Q ss_pred cccccccccCccccccchhhHhhhhhccCCCC-CCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccccc-cc
Q 046351 310 QNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNK-WGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGD-SL 387 (468)
Q Consensus 310 ~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~-~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~-~l 387 (468)
.|++|+..+ ..+++.+.+|+.. |... ...+ .+ +..+.... + .+++++.+|++||+..+...++ +.
T Consensus 462 ~gm~IR~a~-----~~D~~~I~~L~~~-~~~~~~~~~-~~---~~~l~~~~-~--~~~Va~~~g~IVG~~~l~~~~~~~~ 528 (614)
T PRK12308 462 SGVKVRPAR-----LTDIDAIEGMVAY-WAGLGENLP-RS---RNELVRDI-G--SFAVAEHHGEVTGCASLYIYDSGLA 528 (614)
T ss_pred CCCEEEECC-----HHHHHHHHHHHHH-HHhhhcccc-cC---HHHHhccc-C--cEEEEEECCEEEEEEEEEEcCCCeE
Confidence 467776643 4567777777654 2221 1111 11 12222222 2 3567788999999987655432 22
Q ss_pred cccccccCCCccCCCcchhhhHHHHHHHHHhcccccccccccc-cccccccccceee
Q 046351 388 FGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQG-EHKIQRGYLPVTT 443 (468)
Q Consensus 388 ~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~-e~K~~~G~~p~~~ 443 (468)
+-......+.....++ -..++-.++++|.+.|++.+.+-... .|=.+.||.....
T Consensus 529 ~I~~i~V~P~~rGkGI-Gk~Ll~~l~~~ak~~g~~~i~l~~~a~~FYek~GF~~~~~ 584 (614)
T PRK12308 529 EIRSLGVEAGWQVQGQ-GSALVQYLVEKARQMAIKKVFVLTRVPEFFMKQGFSPTSK 584 (614)
T ss_pred EEEEEEECHHHcCCCH-HHHHHHHHHHHHHHCCCCEEEEeeCcHHHHHHCCCEECCc
Confidence 1111122221011122 23456678899999999988754332 3445778776653
No 45
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=37.51 E-value=43 Score=22.92 Aligned_cols=59 Identities=25% Similarity=0.099 Sum_probs=33.7
Q ss_pred EeecCCcccccccccccc---ccccccccccCCCccCCCcchhhhHHHHHHHHHhcccccccc
Q 046351 367 VAEDGDELVAGALNLIGG---DSLFGRLWGCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEA 426 (468)
Q Consensus 367 ~a~~dg~~VA~~l~l~~g---~~l~~~y~G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~ 426 (468)
+++.++++||+....... ..++...++..++....++ ...++.++++++.++|++.+.+
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGI-GSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCH-HHHHHHHHHHHHHHcCCcEEEe
Confidence 456678999998877765 2222111232221011222 2345678899999988887654
No 46
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=36.97 E-value=43 Score=30.69 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=82.7
Q ss_pred ccchhhHhhhhhccCCCCCC---CcchhhHHHHHhhhc-cCCeEEEEEeec-CCccccccccccccccccccccccCCC-
Q 046351 324 AKHWDSFYRFYKNTTDNKWG---SPYLTRDFFHDMGSK-MKDQVLLVVAED-GDELVAGALNLIGGDSLFGRLWGCHPR- 397 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g---~~~~~~~Ff~~L~~~-l~~~~~l~~a~~-dg~~VA~~l~l~~g~~l~~~y~G~~~~- 397 (468)
.++++.+.+.|+....+... ....+.+.+.+-... ..+..-++++.. +|+++|.+..-.+...--++ +....
T Consensus 9 ~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~--~tve~S 86 (169)
T COG1247 9 AADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYR--HTVELS 86 (169)
T ss_pred HHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccc--eEEEEE
Confidence 46778888888776655311 223344444432232 233445666754 49999999988887653222 11110
Q ss_pred ------ccCCCcchhhhHHHHHHHHHhcccccccccccc------cccccccccceeeeee-eeecCcchhhhhhhhhhh
Q 046351 398 ------AYYPSLHFEACYYQAIEAAIELSLSAVEAGAQG------EHKIQRGYLPVTTYSC-HYLLHEDFRKPIENFLVR 464 (468)
Q Consensus 398 ------~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~------e~K~~~G~~p~~~ys~-~~~~~~~~~~~~~~~~~~ 464 (468)
....++- ..++.++|+.|-++|++..-.+... ..-.+.||+-..+..- -+-.+.++...+.+.+..
T Consensus 87 iYv~~~~~g~GiG-~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~~l~ 165 (169)
T COG1247 87 IYLDPAARGKGLG-KKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQLLLE 165 (169)
T ss_pred EEECcccccccHH-HHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeehhhc
Confidence 0111221 2457889999999999998876653 2445667776655332 255566666667666666
Q ss_pred hcc
Q 046351 465 EST 467 (468)
Q Consensus 465 ~~~ 467 (468)
+++
T Consensus 166 ~~~ 168 (169)
T COG1247 166 EGR 168 (169)
T ss_pred ccC
Confidence 654
No 47
>PTZ00330 acetyltransferase; Provisional
Probab=33.86 E-value=1.1e+02 Score=25.95 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=58.0
Q ss_pred ccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhc--c-CCeEEEEEeecCCcccccccccccc-----ccccc--cccc
Q 046351 324 AKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSK--M-KDQVLLVVAEDGDELVAGALNLIGG-----DSLFG--RLWG 393 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~--l-~~~~~l~~a~~dg~~VA~~l~l~~g-----~~l~~--~y~G 393 (468)
.++++.+.+++.+.... +..+.+....+.+. . +....++++..+|++||++.+.... +..++ ....
T Consensus 14 ~~D~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~ 89 (147)
T PTZ00330 14 EGDLGSVLELLSHLTSA----PALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVV 89 (147)
T ss_pred cccHHHHHHHHHHhcCC----CccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEE
Confidence 46778888887664322 12223323333222 1 2223466677899999998765322 11010 0001
Q ss_pred cCCCccCCCcchhhhHHHHHHHHHhcccccccccccc---ccccccccccee
Q 046351 394 CHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQG---EHKIQRGYLPVT 442 (468)
Q Consensus 394 ~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~~---e~K~~~G~~p~~ 442 (468)
..+.....++ -..++-.++++|.+.|+..+-+.... .+=.+.|+.+..
T Consensus 90 V~~~~rg~Gi-g~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~ 140 (147)
T PTZ00330 90 VDPSYRGQGL-GRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACE 140 (147)
T ss_pred ECHHHcCCCH-HHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEec
Confidence 1111011222 22345678899999998877655431 244566766654
No 48
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=31.67 E-value=1.2e+02 Score=28.09 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=54.1
Q ss_pred cceeeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccc--cCcc--cCCCeEEeecCch----
Q 046351 154 TPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCV--PFTP--VTGPRILLRNTSI---- 225 (468)
Q Consensus 154 ~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~--pftp--~~G~~~l~~~~~~---- 225 (468)
.+.|+++.+ +|+++|.+=+.=.+.+ +++ ...||.++... |-++ ....++.++++..
T Consensus 44 ~~~ylv~~~-~g~v~g~~RLlptt~p---~ML------------~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~ 107 (182)
T PF00765_consen 44 DAVYLVALD-DGRVVGCARLLPTTGP---YML------------SDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRA 107 (182)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEETTS-----HH------------HHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCH
T ss_pred CCeEEEEEE-CCEEEEEeeeccCCCc---chh------------hhHHHHHhCCCCCCCCCcceeeeEEEEccccccccc
Confidence 467888887 5999998876633322 111 11234444221 1111 0112555554321
Q ss_pred --hHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhhh
Q 046351 226 --KDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQRI 271 (468)
Q Consensus 226 --~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~~ 271 (468)
...+...|+.++.++|.++|+..+.... +....+.++..|+...+
T Consensus 108 ~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~-~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 108 GSRSPVTMELLLGMVEFALSNGIRHIVGVV-DPAMERILRRAGWPVRR 154 (182)
T ss_dssp SCC-THHHHHHHHHHHHHHCTT-SEEEEEE-EHHHHHHHHHCT-EEEE
T ss_pred ccccHHHHHHHHHHHHHHHHCCCCEEEEEE-ChHHHHHHHHcCCceEE
Confidence 1245678999999999999998765433 33445667778876543
No 49
>PRK07757 acetyltransferase; Provisional
Probab=30.30 E-value=86 Score=27.09 Aligned_cols=112 Identities=16% Similarity=0.055 Sum_probs=57.1
Q ss_pred ccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccccccc-cccccccCCCccCCC
Q 046351 324 AKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGGDSL-FGRLWGCHPRAYYPS 402 (468)
Q Consensus 324 ~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g~~l-~~~y~G~~~~~~~~~ 402 (468)
.++++.+.+++.+........+ .+ .+.+...+. .++++..+|++||+.......+.. +.......+.....+
T Consensus 9 ~~D~~~l~~l~~~~~~~~~~~~-~~---~~~~~~~~~---~~~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~G 81 (152)
T PRK07757 9 LSDVKAIHALINVYAKKGLMLP-RS---LDELYENIR---DFYVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQG 81 (152)
T ss_pred cccHHHHHHHHHHHHhcCCccC-CC---HHHHHhccC---cEEEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCC
Confidence 4577888888765432211111 11 223333222 245667889999998765544321 110111122101122
Q ss_pred cchhhhHHHHHHHHHhcccccccccccc-cccccccccceee
Q 046351 403 LHFEACYYQAIEAAIELSLSAVEAGAQG-EHKIQRGYLPVTT 443 (468)
Q Consensus 403 L~~~ll~~~~I~~Aie~G~~~~d~G~~~-e~K~~~G~~p~~~ 443 (468)
+ -..++..++++|.+.|+..+..-... .+=.+.|+.+...
T Consensus 82 l-g~~Ll~~l~~~a~~~g~~~i~~~~~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 82 I-GRMLVEACLEEARELGVKRVFALTYQPEFFEKLGFREVDK 122 (152)
T ss_pred H-HHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHCCCEEccc
Confidence 2 23446778899999998877543222 3445567776643
No 50
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=29.61 E-value=17 Score=29.10 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=1.2
Q ss_pred eeeeeecccccCCCccccCCCCCCCCCC
Q 046351 17 AVAVVVSSYCKPSPFLRRFSPKLGRSPC 44 (468)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (468)
.+..|+..|..|||++-.+++.||-.|.
T Consensus 50 svtlpvagytspsptlpnrnrscgcnpa 77 (117)
T PF09301_consen 50 SVTLPVAGYTSPSPTLPNRNRSCGCNPA 77 (117)
T ss_dssp S---S-----------------------
T ss_pred ceeeeeccccCCCCCCCCCCCCCCCCHH
Confidence 4567888999999999888888887664
No 51
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=27.54 E-value=2.6e+02 Score=26.36 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=54.6
Q ss_pred cceeeEeecCCCceeEEEeeeeeeccccceeechhhHHHHhhccccccccccccccC--cc--cCCCeEEeecCch----
Q 046351 154 TPCHIVVKDECENVLGVVPLYLKSHSYGEFVFDHSWADAYYGYGERYYPKFQCCVPF--TP--VTGPRILLRNTSI---- 225 (468)
Q Consensus 154 ~~~~l~v~d~~G~lva~~Pl~~~~~~~g~~~~d~~~~~~~~~~g~~~~p~ll~~~pf--tp--~~G~~~l~~~~~~---- 225 (468)
..+|++..+++|+++|.+=+.-.+.+ +.+. ..||.++...+. .+ ..-.++.++++..
T Consensus 52 ~~~yll~~~~~g~vvG~~RLlptt~p---~ml~------------~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~ 116 (207)
T PRK13834 52 KPTYILAISDSGRVAGCARLLPAIGP---TMLA------------QVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRG 116 (207)
T ss_pred CCEEEEEEeCCCeEEEEEecccCCCc---chhh------------hhcHHhcCCCCCCCCCCEEEEeeeEEccccccccc
Confidence 35677777668999998887744322 1110 112322211111 00 0112444544310
Q ss_pred ---hHHHHHHHHHHHHHhhhhcccceeEEecCChhhhhhhcccchhhh
Q 046351 226 ---KDQVIDVIISAMKDLTAKSRVSSLHITFPSENEWHKLGEKGFLQR 270 (468)
Q Consensus 226 ---~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~~~~~l~~~G~~~~ 270 (468)
...+...|+.++.+++..+|+..+.... +....+.|+..|+...
T Consensus 117 ~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~-~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 117 GGQLHEATLTMFAGIIEWSMANGYTEIVTAT-DLRFERILARAGWPMQ 163 (207)
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCCEEEEEE-CHHHHHHHHHcCCCeE
Confidence 1124557899999999999998765433 3344566777787643
No 52
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=27.34 E-value=41 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.326 Sum_probs=26.9
Q ss_pred ccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCe
Q 046351 305 KKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQ 362 (468)
Q Consensus 305 Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~ 362 (468)
++++++|++|.-...-..+.+..++||.-|.. +.||..|.+.|...
T Consensus 25 ~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~------------k~ff~~Lv~~m~sG 70 (139)
T PRK14545 25 DMITAAGFRIVAMKLTQLTVADAETFYAVHAE------------RPFYGELVEFMSRG 70 (139)
T ss_pred HHHHHCCCEEEEeeeecCCHHHHHHHHHHhCC------------CCchHHHHHHHhcC
Confidence 34566787765433323445666777753322 35788888887443
No 53
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=26.90 E-value=2.2e+02 Score=23.93 Aligned_cols=52 Identities=6% Similarity=0.047 Sum_probs=32.6
Q ss_pred EEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCC--hhhhhhhcccchhh
Q 046351 218 ILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPS--ENEWHKLGEKGFLQ 269 (468)
Q Consensus 218 ~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~--~~~~~~l~~~G~~~ 269 (468)
+.+.|+.....+...|++.+.+.|++.+...+.+.... .......+..||..
T Consensus 82 l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~ 135 (144)
T PRK10146 82 LVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQ 135 (144)
T ss_pred eEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCch
Confidence 34444443345667888999999999998877774322 22334456677743
No 54
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=26.40 E-value=3.6e+02 Score=22.99 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhh-hhcccceeEEecCCh--hhhhhhcccchhhhh
Q 046351 226 KDQVIDVIISAMKDLT-AKSRVSSLHITFPSE--NEWHKLGEKGFLQRI 271 (468)
Q Consensus 226 ~~~~~~aL~~al~~la-~~~~~~~~~l~~~~~--~~~~~l~~~G~~~~~ 271 (468)
...+...|+..+.+.| ++.|+..+.+..... .....++..||...-
T Consensus 90 ~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g 138 (155)
T PF13420_consen 90 GKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEG 138 (155)
T ss_dssp TSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEE
T ss_pred CCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEE
Confidence 3445667888999999 888988887754333 445667788887543
No 55
>PHA01807 hypothetical protein
Probab=25.98 E-value=82 Score=28.21 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=37.4
Q ss_pred EEEEeecCCcccccccccccccccccccccc----CCCccCCCcc-hhhhHHHHHHHHHhccccccccccc
Q 046351 364 LLVVAEDGDELVAGALNLIGGDSLFGRLWGC----HPRAYYPSLH-FEACYYQAIEAAIELSLSAVEAGAQ 429 (468)
Q Consensus 364 ~l~~a~~dg~~VA~~l~l~~g~~l~~~y~G~----~~~~~~~~L~-~~ll~~~~I~~Aie~G~~~~d~G~~ 429 (468)
..++++.+|++||++.+....+.-....++. ... .+.+.- -..++-+++++|.+.|+..+.+...
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~p-e~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~ 123 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLP-EYRNAGVAREFLRELIRLAGEGNLPLIAFSHR 123 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECH-HHcCCCHHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3456778999999976644433211111110 111 122211 2345678999999999999877654
No 56
>PRK01346 hypothetical protein; Provisional
Probab=25.33 E-value=1.9e+02 Score=29.98 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=63.9
Q ss_pred ccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCcccccccccccc-----c
Q 046351 311 NLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIGG-----D 385 (468)
Q Consensus 311 Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~g-----~ 385 (468)
+++++.++ .++++++.+|+...+.... +.++.......+... ..++++.+|++||++..+... +
T Consensus 6 ~~~iR~~~-----~~D~~~i~~L~~~~f~~~~-----~~~~~~~~~~~~~~~-~~~va~~~~~lvg~~~~~~~~~~~~~~ 74 (411)
T PRK01346 6 AITIRTAT-----EEDWPAWFRAAATGFGDSP-----SDEELEAWRALVEPD-RTLGAFDGDEVVGTAGAFDLRLTVPGG 74 (411)
T ss_pred CceeecCC-----HHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHhcCcC-CeEEEEECCEEEEEEEEeccccccCCC
Confidence 45565542 4568888988877654321 222332222222222 245677899999998766432 1
Q ss_pred -ccccccc---ccCCCccCCCcchhhhHHHHHHHHHhccccccccccc-ccccccccccceeee
Q 046351 386 -SLFGRLW---GCHPRAYYPSLHFEACYYQAIEAAIELSLSAVEAGAQ-GEHKIQRGYLPVTTY 444 (468)
Q Consensus 386 -~l~~~y~---G~~~~~~~~~L~~~ll~~~~I~~Aie~G~~~~d~G~~-~e~K~~~G~~p~~~y 444 (468)
..-..++ +..+.....++ -..++-++++.+.++|+...-+-.. ..+=.+.|+++...+
T Consensus 75 ~~~~~~~i~~v~V~P~~RgrGi-g~~Ll~~~l~~a~~~g~~~~~L~~~~~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 75 AVLPAAGVTAVTVAPTHRRRGL-LTALMREQLRRIRERGEPVAALTASEGGIYGRFGYGPATYS 137 (411)
T ss_pred CccceeEEEEEEEChhhcCCCH-HHHHHHHHHHHHHHCCCcEEEEECCchhhHhhCCCeeccce
Confidence 1100111 11121111222 2345678899999999876654332 234446777776543
No 57
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=25.13 E-value=3.2e+02 Score=24.80 Aligned_cols=49 Identities=6% Similarity=-0.066 Sum_probs=31.1
Q ss_pred ecCchhHHHHHHHHHHHHHhhhhcccceeEEecCC--hhhhhhhcccchhh
Q 046351 221 RNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPS--ENEWHKLGEKGFLQ 269 (468)
Q Consensus 221 ~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~--~~~~~~l~~~G~~~ 269 (468)
.++.....+..+|++.+.+.+++.|...+.+.... ....+.++..||..
T Consensus 135 ~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~ 185 (194)
T PRK10975 135 FPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANI 185 (194)
T ss_pred ChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeE
Confidence 34333344566888888898888888777664322 23445667778753
No 58
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=25.01 E-value=44 Score=29.26 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=36.0
Q ss_pred hhhhhHHHhccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCC
Q 046351 296 KRKNIRQERKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGD 372 (468)
Q Consensus 296 ~Rk~IRr~~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg 372 (468)
.|+-|-+-+.++|+.|+++.-+.---.+.+..+.+|.-++ .+.||..|.+-+-....+..+..+.
T Consensus 15 ~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~------------~kpFf~~Lv~fitSgPvv~~VleGe 79 (135)
T COG0105 15 KRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHK------------GKPFFGELVEFITSGPVVAMVLEGE 79 (135)
T ss_pred hhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHc------------CCCccHHHHhheecCcEEEEEEecH
Confidence 3555666677788899876532211122344455554322 4678999988875443333333333
No 59
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=24.77 E-value=1.8e+02 Score=29.14 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=50.0
Q ss_pred CCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccc-----cccccc----cccccCCCccCCCcchhhhHHHH
Q 046351 342 WGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIG-----GDSLFG----RLWGCHPRAYYPSLHFEACYYQA 412 (468)
Q Consensus 342 ~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~-----g~~l~~----~y~G~~~~~~~~~L~~~ll~~~~ 412 (468)
.+..+++.++.+-+.+.++.....++++.+|++||..=++.. +..++. -|.|... ..+. ....+.-++
T Consensus 12 ~~~~fh~~~w~~~~~~~~g~~~~~l~~~~~g~lvg~lPl~~~r~~~~g~~l~S~P~~~ygG~l~--~~~~-~~~~l~~~~ 88 (330)
T TIGR03019 12 EATFFHRAGWQRVIESAFGHPTYFLYAERDGRIVGVLPLAEIRSRLFGNFLVSLPFCVYGGIAA--DSAE-VAQALEAEA 88 (330)
T ss_pred CCCchhhHHHHHHHHHhcCCCceEEEEecCCcEEEEecceeccccccCCCeeecCCCCcCcccc--CCHH-HHHHHHHHH
Confidence 366788889888776667777677788899999999855432 222221 1212111 0000 012234456
Q ss_pred HHHHHhccccccccc
Q 046351 413 IEAAIELSLSAVEAG 427 (468)
Q Consensus 413 I~~Aie~G~~~~d~G 427 (468)
.+.+.+.|+..+++-
T Consensus 89 ~~~~~~~~~~~l~lr 103 (330)
T TIGR03019 89 QGLADRLGVGHLELR 103 (330)
T ss_pred HHHHHhcCCCEEEec
Confidence 678888888888764
No 60
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=24.39 E-value=48 Score=29.21 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=27.3
Q ss_pred hccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCe
Q 046351 304 RKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQ 362 (468)
Q Consensus 304 ~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~ 362 (468)
+.++++.|++|.-..--..+.+..++||.-|. .+.||..|...|...
T Consensus 22 i~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~------------~k~f~~~Lv~~m~sG 68 (137)
T PRK14542 22 LQRIEKEGFKILGLKYLKLSLEDAKQFYKVHS------------ARPFYNDLCNYMSSG 68 (137)
T ss_pred HHHHHHCCCEEEEeeeecCCHHHHHHHHHHhc------------CCccHHHHHHHHhcC
Confidence 33466678766544333344566677775432 135788888887443
No 61
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=23.29 E-value=56 Score=28.91 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=25.9
Q ss_pred cccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCC
Q 046351 306 KISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKD 361 (468)
Q Consensus 306 k~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~ 361 (468)
+++++|+.|.-..--..+.+..++||.-|.. +.||..|...|..
T Consensus 24 ~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~------------k~ff~~Lv~~m~s 67 (140)
T PRK14541 24 KIERAGFRVVAMKKTRLTKETAGEFYAVHRE------------RPFYGELVEFMSS 67 (140)
T ss_pred HHHHCCCEEEEeeeecCCHHHHHHHHHHHcC------------CccHHHHHHHHhc
Confidence 4566887665443333445666777743222 3578888887743
No 62
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.27 E-value=1.5e+02 Score=22.28 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=33.6
Q ss_pred EEeecCchhHHHHHHHHHHHHHhhhhcccceeEEecCChh--hhhhhcccch
Q 046351 218 ILLRNTSIKDQVIDVIISAMKDLTAKSRVSSLHITFPSEN--EWHKLGEKGF 267 (468)
Q Consensus 218 ~l~~~~~~~~~~~~aL~~al~~la~~~~~~~~~l~~~~~~--~~~~l~~~G~ 267 (468)
+.+++......+...|++.+.+.+++.++..+.+...+.+ ..+.++..||
T Consensus 31 ~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf 82 (83)
T PF00583_consen 31 LAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGF 82 (83)
T ss_dssp EEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTE
T ss_pred EEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCC
Confidence 4456666556678899999999999998888777543332 2333444454
No 63
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=20.76 E-value=1.3e+02 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=20.8
Q ss_pred EEEEeecCCcccccccccccccccc
Q 046351 364 LLVVAEDGDELVAGALNLIGGDSLF 388 (468)
Q Consensus 364 ~l~~a~~dg~~VA~~l~l~~g~~l~ 388 (468)
.+++++.++++||+..+...++..+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~~~~ 28 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNEDFAY 28 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTTEEE
T ss_pred EEEEEEECCEEEEEEEEEEcCCEEE
Confidence 5678899999999999988887554
No 64
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=20.24 E-value=93 Score=30.37 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=36.8
Q ss_pred cccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCeEEEEEeecCCccccccccccc
Q 046351 323 KAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQVLLVVAEDGDELVAGALNLIG 383 (468)
Q Consensus 323 ~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~~~l~~a~~dg~~VA~~l~l~~ 383 (468)
+.++++++.+|......- .+.+..+.++++.+.....+....+++..+|++||+..+...
T Consensus 7 ~~~d~~~v~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~ 66 (292)
T TIGR03448 7 DADLRRDVRELLAAATAV-DGVAPVSEQVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPA 66 (292)
T ss_pred CHHHHHHHHHHHHHHHhc-CCCCCCCHHHHhhccccCCCCceEEEEEECCEEEEEEEEEcC
Confidence 456778888887754332 233445567666653322223345567788999999876654
No 65
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=20.22 E-value=78 Score=29.02 Aligned_cols=52 Identities=6% Similarity=0.103 Sum_probs=29.4
Q ss_pred hccccccccccccccCccccccchhhHhhhhhccCCCCCCCcchhhHHHHHhhhccCCe
Q 046351 304 RKKISAQNLTMKRLRGHEIKAKHWDSFYRFYKNTTDNKWGSPYLTRDFFHDMGSKMKDQ 362 (468)
Q Consensus 304 ~Rk~~~~Gv~v~~~~~~~~~~~~ld~f~~Ly~~t~~r~~g~~~~~~~Ff~~L~~~l~~~ 362 (468)
+.++++.|++|.-..--..+.+...+|| .|.... ....+.||..|...|...
T Consensus 26 i~~ie~~Gf~I~~~k~~~lt~e~a~~fY-~~~~~~------~h~gk~ff~~Lv~~mtsG 77 (169)
T PRK14543 26 VSRFERVGLKIVAAKMLLVDRSMAEKHY-LYDDIA------VRHGEAVWKSLIKFISSS 77 (169)
T ss_pred HHHHHHCCCEEEeeeeccCCHHHHHHHh-ccCccc------cccCCchHHHHHHHHccC
Confidence 3345667876654433334556677777 333221 122357888888887543
Done!