BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046354
         (510 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/583 (55%), Positives = 382/583 (65%), Gaps = 83/583 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           SQ G  G V+ A KLFDEM   D VS  +MIT +L+N++L KAE LF+ MP+  R IVAE
Sbjct: 77  SQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPD--RTIVAE 134

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV---------------- 105
           SAMIDGY KAG +D A+KVFD + + NV+SWTSLISGYF+  QV                
Sbjct: 135 SAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVV 194

Query: 106 ---------------DEGRRLFDRMP-----------------------LKL------KN 121
                          D+ R +F++MP                       LKL      +N
Sbjct: 195 SWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRN 254

Query: 122 VVSWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           + SW T++ GC              L+     +SWT M +GL RN  TKLAREYF QMPN
Sbjct: 255 LYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPN 314

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           KDI AWNAMITAYVD   + +ASELFNLM +RN+ TWNAMID YAR+ P+G AMK L LM
Sbjct: 315 KDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILM 374

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            +S   PNETT T ILTSC GMLE M AHALAI +G E ETSL+      Y         
Sbjct: 375 LRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIG----- 429

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D++S+R+AFE L+AKDVVSWTAM+LA++ HGHG     +F  MLKSGTKPDEITFVGVLS
Sbjct: 430 DISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLS 489

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLV+KG+K F+ MSRAYG +PRAEHYSCL DIL RAGQV EAM VV KMP  ERD
Sbjct: 490 ACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERD 549

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             VLGALLGACRLHG+V MADYIG++LIELQP+SSG YVL ANV AARG WDEFA+VRKK
Sbjct: 550 GAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKK 609

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKE 508
           M +R V+KV  FSQIEVKGK H   A     P  E  Y +L+E
Sbjct: 610 MKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEIYELLRE 652



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 23/268 (8%)

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
           L++ +     + L R    + AR+ F +MP+ D V++ AMITAY+    + +A +LF  M
Sbjct: 67  LDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTM 126

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P R +   +AMID YA+ G   +A K+ + M  +    N  + TS+++      +  +A 
Sbjct: 127 PDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDT----NVFSWTSLISGY--FRDGQVAK 180

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEAKDVVSWTAMILAY 318
           A  +   F+Q   +  K    +     G+  +  ++ AR  F ++  K+ +SWTAM+ +Y
Sbjct: 181 ACQL---FDQ---MPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSY 234

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
            ++G   +  +LF  M     + +  ++  ++S C     V +  K F+LM         
Sbjct: 235 VDNGRTDEALKLFHEM----PQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLR-----N 285

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMP 406
           A  ++ +   L R G  K A     +MP
Sbjct: 286 AVSWTIMVSGLARNGFTKLAREYFDQMP 313


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 315/596 (52%), Positives = 387/596 (64%), Gaps = 101/596 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S  G  GKVKEA K+FDEM + D VS ASMITV+L+N DLP+AE LFR +PE  RN+VA+
Sbjct: 59  SNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPE--RNVVAD 116

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL---------- 111
           SAMI GYV+AGR+D+AR+VFD++ E NV+SWTSL+SGYFK   VDE  RL          
Sbjct: 117 SAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVV 176

Query: 112 ---------------------FDRMPLK-----------------------------LKN 121
                                F++MP K                              +N
Sbjct: 177 SWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRN 236

Query: 122 VVSWTTVVLGCAH-----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           + SW  ++ GC +           N +  + EV SWTT+ TGL RN M +LAR+YF  MP
Sbjct: 237 LYSWNIMISGCINANRLNEAIQLFNSMPQRNEV-SWTTLVTGLARNGMMELARKYFDHMP 295

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            KDI AWNAMITAYVD G+MA+AS LFNLMP++N+ +WNA+ID YARNGPE  +++ L L
Sbjct: 296 TKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLIL 355

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M +S F PNETT TS+LT+C+ +LE M AH L I LGFEQ+  L       Y        
Sbjct: 356 MLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCG---- 411

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            DV SAR  F++LE KD+VSWTAMILAYSNHG G    ++FARML+SG KPD ITFVG+L
Sbjct: 412 -DVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLL 470

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSHAGLV+KG+  F+ MS AYG +PRAEHYSCL DIL RAG++ +AM+VVS+MPPHE 
Sbjct: 471 SACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHEC 530

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  VLGALLGACRLH DV +A++IGE+LIE +P+SSG+YVL AN +AA G+W+EFA+VRK
Sbjct: 531 DGAVLGALLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRK 590

Query: 471 KM-ERRVKKVASFSQIEVKGKDHT---------------------LLAPMREMGYV 504
           +M ER VKK   FSQIEVKGK H                      LL  MREMGY 
Sbjct: 591 EMKERNVKKEPGFSQIEVKGKSHVFFVRDRSHPQLEEIYLFLDEKLLPLMREMGYT 646



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 136/347 (39%), Gaps = 94/347 (27%)

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP--------------------------- 116
           ++  + Y     IS      +V E R++FD MP                           
Sbjct: 46  VFASDTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILF 105

Query: 117 --LKLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCT------------- 151
             +  +NVV+ + ++ G    G + K            V SWT++ +             
Sbjct: 106 REIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMR 165

Query: 152 ------------------GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
                             G  +N     AR+ F QMP K+I+AW AM+ +YV+   + +A
Sbjct: 166 LFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEA 225

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--E 251
            ELF  MPQRN+++WN MI           A++L N M Q     NE + T+++T     
Sbjct: 226 FELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQR----NEVSWTTLVTGLARN 281

Query: 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAK 306
           GM+E      LA +          +  T     W+      V+   +A     F  +  K
Sbjct: 282 GMME------LARKY-------FDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEK 328

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++VSW A+I  Y+ +G      R    ML+S  KP+E T   VL+ C
Sbjct: 329 NIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTAC 375


>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
          Length = 932

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 304/540 (56%), Positives = 358/540 (66%), Gaps = 78/540 (14%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
           M   D VS  +MIT +L+N++L KAE LF+ MP+  R IVAESAMIDGY KAG +D A+K
Sbjct: 1   MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPD--RTIVAESAMIDGYAKAGLMDSAQK 58

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQV-------------------------------DEG 108
           VFD + + NV+SWTSLISGYF+  QV                               D+ 
Sbjct: 59  VFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQA 118

Query: 109 RRLFDRMP-----------------------LKL------KNVVSWTTVVLGCAHNG--- 136
           R +F++MP                       LKL      +N+ SW T++ GC       
Sbjct: 119 RSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVN 178

Query: 137 -------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
                  L+     +SWT M +GL RN  TKLAREYF QMPNKDI AWNAMITAYVD   
Sbjct: 179 EAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECL 238

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           + +ASELFNLM +RN+ TWNAMID YAR+ P+G AMK L LM +S   PNETT T ILTS
Sbjct: 239 IVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTS 298

Query: 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           C GMLE M AHALAI +G E ETSL+      Y         D++S+R+AFE L+AKDVV
Sbjct: 299 CWGMLELMQAHALAIVVGCECETSLSNALITMYSRIG-----DISSSRIAFESLKAKDVV 353

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SWTAM+LA++ HGHG     +F  MLKSGTKPDEITFVGVLS CSHAGLV+KG+K F+ M
Sbjct: 354 SWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSM 413

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
           SRAYG +PRAEHYSCL DIL RAGQV EAM VV KMP  ERD  VLGALLGACRLHG+V 
Sbjct: 414 SRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVE 473

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           MADYIG++LIELQP+SSG YVL ANV AARG WDEFA+VRKKM +R V+KV  FSQIE +
Sbjct: 474 MADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEFQ 533


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 283/567 (49%), Positives = 359/567 (63%), Gaps = 78/567 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G  GK+ EA KLFDEM Q D VS  SMI V+L+N DL +AE +F+ MP  QRN+VAESA
Sbjct: 75  LGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMP--QRNVVAESA 132

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------- 116
           MIDGY K GR+D+ARKVFD + + N +SWTSLISGYF   +++E   LFD+MP       
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSW 192

Query: 117 ----------------------LKLKNVVSWTTVVLGCAHNGLIAK-----LEV------ 143
                                 +  KN+++WT +V     NG  ++     LE+      
Sbjct: 193 TMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVR 252

Query: 144 ------------------------------ISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
                                         +SWT M +GL +N M  +AR+YF  MP KD
Sbjct: 253 SWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKD 312

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           + AW AMITA VD G M +A +LF+ +P++NV +WN MID YARN   G A+ L  LM +
Sbjct: 313 MAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLR 372

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           S F PNETT TS++TSC+GM+E M AHA+ I LGFE  T LT      Y         D+
Sbjct: 373 SCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLY-----SKSGDL 427

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            SARL FE+L++KDVVSWTAMI+AYSNHGHG    ++FARML SG KPDE+TFVG+LS C
Sbjct: 428 CSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSAC 487

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH GLV +GR+ F+ +   Y   P+AEHYSCL DIL RAG V EAM VV+ +PP  RD  
Sbjct: 488 SHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDVVATIPPSARDEA 547

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           VL ALLGACRLHGDV +A+ IGE+L+EL+PSSSG YVL AN +AA G+WDEFA+VRK+M 
Sbjct: 548 VLVALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMR 607

Query: 473 ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           ER VK++  +SQI++ GK+H  +   R
Sbjct: 608 ERNVKRIPGYSQIQITGKNHVFVVGER 634



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 35/279 (12%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           T L R+     AR+ F +MP +D V++N+MI  Y+   ++ +A  +F  MPQRNV   +A
Sbjct: 73  TILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESA 132

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLG 267
           MID YA+ G    A K+ + M Q     N  + TS+++   SC G +E       A+ L 
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQR----NAFSWTSLISGYFSC-GKIEE------ALHL- 180

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           F+Q   +  +    +     GF  +  ++ A   F  +  K++++WTAM+ AY ++G   
Sbjct: 181 FDQ---MPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFS 237

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           + ++LF  M +   +   I    ++S C  A  V++    F  M       P   H S  
Sbjct: 238 EAYKLFLEMPERNVRSWNI----MISGCLRANRVDEAIGLFESM-------PDRNHVSWT 286

Query: 386 ADI--LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           A +  L +   +  A +    MP   +D     A++ AC
Sbjct: 287 AMVSGLAQNKMIGIARKYFDLMP--YKDMAAWTAMITAC 323


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/553 (40%), Positives = 302/553 (54%), Gaps = 77/553 (13%)

Query: 16  LFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           +FD M +  D V+ A+M+ + L + DLP AEAL+RA P   R I  ++ M+DGYVKAG+V
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------------------ 116
           D AR++FD +   NV +WT ++SGY +A  VDE RRLFD MP                  
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 117 -----------LKLKNVVSWTTVVLGCAHNGLIAK-LE---------------------- 142
                      +  +NVV+WT +V     NG I + LE                      
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 143 ------------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
                             V+SWT M TGL +N     ARE+F +MP KDI AWN+MITAY
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
            + G +  A  LF++MP +N+ TWN +ID Y+ N  +  A++L  LM +S   P+ TT  
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLI 379

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           S+L   E  +E    H L+ +LG++ ET+L       Y         D++SA LAF RL 
Sbjct: 380 SVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMY-----SRSGDLSSAWLAFRRLN 434

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KD ++WT+MI A +NHG      + FA+ML+ G KP   TF  VLS C+H GLVEKGRK
Sbjct: 435 EKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRK 494

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F  +S  YG +P  EHYSCL D+L RAG V+EA  VV  M     D  +LG LLG+C  
Sbjct: 495 IFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMT 554

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483
           H +V +   +GE L+++ PS SG Y L ANV A+ G W+E A V K M+  +VKK   FS
Sbjct: 555 HNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFS 614

Query: 484 QIEVKGKDHTLLA 496
           QIEV  ++H   +
Sbjct: 615 QIEVNARNHVFYS 627


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/553 (40%), Positives = 301/553 (54%), Gaps = 77/553 (13%)

Query: 16  LFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           +FD M +  D V+ A+M+ + L + DLP AEAL+RA P   R I  ++ M+DGYVKAG+V
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------------------ 116
           D AR++FD +   NV +WT ++SGY +A  VDE RRLFD MP                  
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 117 -----------LKLKNVVSWTTVVLGCAHNGLIAK-LE---------------------- 142
                      +  +NVV+WT +V     NG I + LE                      
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 143 ------------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
                             V+SWT M TGL +N     ARE+F +MP KDI AWN+MITAY
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
            + G +  A  LF++MP +N+ TWN +ID Y+ N  +  A++L  LM +S   P+ TT  
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLI 379

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           S+L   E  +E    H L+ +LG++ ET+L       Y         D++SA LAF RL 
Sbjct: 380 SVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMY-----SRSGDLSSAWLAFRRLN 434

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KD ++WT+MI A +NHG      + FA+ML+ G KP   TF  VLS C+H GLVEKGRK
Sbjct: 435 EKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRK 494

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F  +S  YG  P  EHYSCL D+L RAG V+EA  VV  M     D  +LG LLG+C  
Sbjct: 495 IFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMT 554

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483
           H +V +   +GE L+++ PS SG Y L ANV A+ G W+E A V K M+  +VKK   FS
Sbjct: 555 HNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFS 614

Query: 484 QIEVKGKDHTLLA 496
           QIEV  ++H   +
Sbjct: 615 QIEVNARNHVFYS 627


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/505 (41%), Positives = 283/505 (56%), Gaps = 21/505 (4%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+V  A +LFD M     V+   M+  + R   + +A  LF AMPE  R++V+ +A
Sbjct: 110 YAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRAGRVSEARELFDAMPE--RSVVSWTA 167

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GY +AG   EAR++FD + E NV SWT ++  Y       +   LFDRMP +  N  
Sbjct: 168 MMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQR--NSY 225

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW  V+ G    G + +            V+SWT M TGL +N    +ARE+F  MP KD
Sbjct: 226 SWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKD 285

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           I AWNAMITAY + G M +A  LF+ MP +++ +WN +ID YA+   +  A  L   M +
Sbjct: 286 ITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLR 345

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           S   PN TT  S+L   E M+E +  H LA  LG   ETSL       Y         D+
Sbjct: 346 SAASPNSTTLISVLVISESMVEVVQIHGLATTLGLLSETSLGNALLTMYSRIG-----DL 400

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            SA LAF+RLE KD ++WT+MI A++NHGH     + FA+ML+ G  P   TF  VLS C
Sbjct: 401 PSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSAC 460

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SHAGLVE+G+  F  +   YG +   EHY+CL DIL RAG ++EAM VV+ MPP   D  
Sbjct: 461 SHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICDDA 520

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS-ANVHAARGEWDEFAQVRKKM 472
           +L  LLGAC +H +V  A  +GE L +  PS SG Y +  ANV A+ G WDE A V K M
Sbjct: 521 ILRTLLGACMMHKEVDAAREVGEVLAKSDPSGSGGYYMVLANVLASGGLWDEMADVWKAM 580

Query: 473 E-RRVKKVASFSQIEVKGKDHTLLA 496
           +   V+K    SQI V  ++H   +
Sbjct: 581 KGSNVRKTPGVSQITVDARNHAFFS 605


>gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays]
 gi|238007964|gb|ACR35017.1| unknown [Zea mays]
          Length = 580

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/494 (40%), Positives = 280/494 (56%), Gaps = 29/494 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V+EA +LFD M + +  S  +++  + RN  L +A  +F  MP  QRN+VA +AM+  
Sbjct: 73  GRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMP--QRNVVAWTAMVKA 130

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV  G++ +A ++FD + E N YSW ++ISG+    +V E  +LF+RMP + KNVVSWTT
Sbjct: 131 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 190

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                                M  GL  N +   ARE+F +MP KD  AWNA+IT Y + 
Sbjct: 191 ---------------------MVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANN 229

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G + +A  LF+ M  +++ TW+ +I+ Y++N  +  A+ +  LM  S   PN  T  SIL
Sbjct: 230 GQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISIL 289

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
              E  +E    H L I LGF  ETSL       Y         D+ SA  AF+RLE KD
Sbjct: 290 VISESTVEVKQIHGLVIALGFLSETSLGNALLTMY-----SRSGDLMSAWFAFKRLEQKD 344

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
            ++WT+++ A+++HG G+     FA+ML+ G KP   TF  VLS C H GLV KGRK F 
Sbjct: 345 AITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFK 404

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            +   YG +P  EHYSCL D+L RAG V+EA  +V  M    RD  +L  LLGAC +H +
Sbjct: 405 SIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNE 464

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
           V +A  +GE L+   PS +G Y L ANV A+ G WDE A V K M   + K+   FSQIE
Sbjct: 465 VEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIE 524

Query: 487 VKGKDHTLLAPMRE 500
           V  ++H   +  +E
Sbjct: 525 VNMRNHVFYSRDQE 538



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 199/398 (50%), Gaps = 41/398 (10%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M+   LR  DL +AEALF A P + R +  ++AM+DGY KAGRVD AR++FD +   NV 
Sbjct: 1   MVASRLRERDLTRAEALFGAAPAAARGLYLDTAMLDGYAKAGRVDRARELFDAMPVKNVV 60

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           +WTS++SGYF+A +V E R LFD MP   +N  SWTTVV G A NG              
Sbjct: 61  TWTSMVSGYFRAGRVQEARELFDVMP--ERNDYSWTTVVQGYARNG-------------- 104

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                  M + ARE F +MP +++VAW AM+ AYVD G + QA ELF++MP+RN ++WNA
Sbjct: 105 -------MLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNSYSWNA 157

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270
           MI  +   G    A++L       R         S  T   G+  N L  A   R  F++
Sbjct: 158 MISGFLSIGKVAEAVQLFE-----RMPHRHKNVVSWTTMVAGLANNGL--ACRAREFFDR 210

Query: 271 ETSLTYKCTCHY--VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
              +  K T  +  +   +     +N A+  F+ + AKD+V+W+ +I AYS +    +  
Sbjct: 211 ---MPAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEAL 267

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            +F  M  S   P+  T + +L        V    K  + +  A GF       + L  +
Sbjct: 268 NMFLLMRHSAVSPNIRTLISILVISESTVEV----KQIHGLVIALGFLSETSLGNALLTM 323

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             R+G +  A     ++   ++D +   +++ A   HG
Sbjct: 324 YSRSGDLMSAWFAFKRL--EQKDAITWTSIVQAFADHG 359



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 42/261 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV 59
           S F   GKV EA +LF+ M     + VS  +M+     N    +A   F  MP   ++  
Sbjct: 160 SGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMP--AKDTA 217

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---- 115
           A +A+I  Y   G+++EA+++FD +   ++ +W+++I  Y K  +  E   +F  M    
Sbjct: 218 AWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSA 277

Query: 116 ------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
                  L    V+S +TV +   H GL+  L  +S T++                    
Sbjct: 278 VSPNIRTLISILVISESTVEVKQIH-GLVIALGFLSETSLG------------------- 317

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                   NA++T Y  +G++  A   F  + Q++  TW +++  +A +G    A+    
Sbjct: 318 --------NALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFA 369

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M +  + P+ TT T++L++C
Sbjct: 370 QMLRHGYKPSSTTFTAVLSAC 390


>gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
 gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
          Length = 701

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/494 (40%), Positives = 280/494 (56%), Gaps = 29/494 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V+EA +LFD M + +  S  +++  + RN  L +A  +F  MP  QRN+VA +AM+  
Sbjct: 194 GRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMP--QRNVVAWTAMVKA 251

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV  G++ +A ++FD + E N YSW ++ISG+    +V E  +LF+RMP + KNVVSWTT
Sbjct: 252 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 311

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                                M  GL  N +   ARE+F +MP KD  AWNA+IT Y + 
Sbjct: 312 ---------------------MVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANN 350

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G + +A  LF+ M  +++ TW+ +I+ Y++N  +  A+ +  LM  S   PN  T  SIL
Sbjct: 351 GQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISIL 410

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
              E  +E    H L I LGF  ETSL       Y         D+ SA  AF+RLE KD
Sbjct: 411 VISESTVEVKQIHGLVIALGFLSETSLGNALLTMY-----SRSGDLMSAWFAFKRLEQKD 465

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
            ++WT+++ A+++HG G+     FA+ML+ G KP   TF  VLS C H GLV KGRK F 
Sbjct: 466 AITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFK 525

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            +   YG +P  EHYSCL D+L RAG V+EA  +V  M    RD  +L  LLGAC +H +
Sbjct: 526 SIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNE 585

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
           V +A  +GE L+   PS +G Y L ANV A+ G WDE A V K M   + K+   FSQIE
Sbjct: 586 VEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIE 645

Query: 487 VKGKDHTLLAPMRE 500
           V  ++H   +  +E
Sbjct: 646 VNMRNHVFYSRDQE 659



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/416 (32%), Positives = 208/416 (50%), Gaps = 41/416 (9%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A  + D+   P   + A+M+   LR  DL +AEALF A P + R +  ++AM+DGY KAG
Sbjct: 104 ARAVLDDDETPGADAYAAMVASRLRERDLTRAEALFGAAPAAARGLYLDTAMLDGYAKAG 163

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
           RVD AR++FD +   NV +WTS++SGYF+A +V E R LFD MP   +N  SWTTVV G 
Sbjct: 164 RVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMP--ERNDYSWTTVVQGY 221

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           A NG++                     + ARE F +MP +++VAW AM+ AYVD G + Q
Sbjct: 222 ARNGML---------------------REAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQ 260

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A ELF++MP+RN ++WNAMI  +   G    A++L       R         S  T   G
Sbjct: 261 AWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFE-----RMPHRHKNVVSWTTMVAG 315

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHY--VFWDWGFQLDVNSARLAFERLEAKDVVS 310
           +  N L  A   R  F++   +  K T  +  +   +     +N A+  F+ + AKD+V+
Sbjct: 316 LANNGL--ACRAREFFDR---MPAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVT 370

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W+ +I AYS +    +   +F  M  S   P+  T + +L        V    K  + + 
Sbjct: 371 WSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEV----KQIHGLV 426

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            A GF       + L  +  R+G +  A     ++   ++D +   +++ A   HG
Sbjct: 427 IALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRL--EQKDAITWTSIVQAFADHG 480



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 42/261 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV 59
           S F   GKV EA +LF+ M     + VS  +M+     N    +A   F  MP   ++  
Sbjct: 281 SGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMP--AKDTA 338

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---- 115
           A +A+I  Y   G+++EA+++FD +   ++ +W+++I  Y K  +  E   +F  M    
Sbjct: 339 AWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSA 398

Query: 116 ------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
                  L    V+S +TV +   H GL+  L  +S T++                    
Sbjct: 399 VSPNIRTLISILVISESTVEVKQIH-GLVIALGFLSETSLG------------------- 438

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                   NA++T Y  +G++  A   F  + Q++  TW +++  +A +G    A+    
Sbjct: 439 --------NALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFA 490

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M +  + P+ TT T++L++C
Sbjct: 491 QMLRHGYKPSSTTFTAVLSAC 511


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 307/590 (52%), Gaps = 101/590 (17%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+ + A  LFDEM + D VS   MI  ++RN +L KA  LF  MPE  R++ + + ++ 
Sbjct: 103 NGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPE--RDVCSWNTILS 160

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLIS----------------------------- 97
           GY + G VD+AR+VFD + E N  SW +L+S                             
Sbjct: 161 GYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCL 220

Query: 98  --GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
             G+ K +++ E R+ FD M  K+++VVSW T++ G A NG I +           +V +
Sbjct: 221 LGGFVKKKKIVEARQFFDSM--KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFT 278

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           WT M +G  +N M + ARE F +MP ++ V+WNAM+  YV    +  A ELF++MP RNV
Sbjct: 279 WTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNV 338

Query: 206 WTWN-------------------------------AMIDRYARNGPEGAAMKLLNLMFQS 234
            TWN                               AMI  Y+++G    A++L  LM + 
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE 398

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ-----ETSLTYKCTCHYVFWD 286
               N ++ +S L++C  ++   L   L  RL   G+E         L   C C      
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG----- 453

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 +  A   F+ +  KD+VSW  MI  YS HG G +  R F  M + G KPD+ T 
Sbjct: 454 -----SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATM 508

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH GLV+KGR+ F+ M++ YG +P ++HY+C+ D+L RAG ++EA  ++  M 
Sbjct: 509 VAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM- 567

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P E D  + G LLGA R+HG+  +A+   +++  ++P +SG YVL +N++A+ G W +  
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 627

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           ++R +M ++ VKKV  +S IE++ K HT        P ++  +  L+++D
Sbjct: 628 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLD 677



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 188/453 (41%), Gaps = 92/453 (20%)

Query: 49  RAMPESQRNIVAE-SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           + +P+S  + + E +  I  Y++ GR  EA +VF  +   +  S+ ++ISGY +  + + 
Sbjct: 49  KPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFEL 108

Query: 108 GRRLFDRMP-----------------------------LKLKNVVSWTTVVLGCAHNGLI 138
            R LFD MP                             +  ++V SW T++ G A NG +
Sbjct: 109 ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCV 168

Query: 139 ----------------------------AKLE-------------VISWTTMCTGLERNA 157
                                       +KLE             ++SW  +  G  +  
Sbjct: 169 DDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKK 228

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               AR++F  M  +D+V+WN +IT Y   G + +A +LF+  P  +V+TW AM+  Y +
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQ 288

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTS-CEGMLENM---LAHALAIRLGFEQETS 273
           N     A +L + M +     NE +  ++L    +G    M   L   +  R      T 
Sbjct: 289 NRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTM 344

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +T    C            ++ A+  F+++  +D VSW AMI  YS  GH ++  RLF  
Sbjct: 345 ITGYAQCG----------KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVL 394

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M + G + +  +F   LS C+    +E G++    + +  G++      + L  +  + G
Sbjct: 395 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCG 453

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            ++EA  +  +M    +D V    ++     HG
Sbjct: 454 SIEEANDLFKEMAG--KDIVSWNTMIAGYSRHG 484


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/508 (37%), Positives = 288/508 (56%), Gaps = 34/508 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LFDEM   D VS  S+IT + +N    +++ LF  MP   +N+V+ ++MI G
Sbjct: 61  GNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMP--TKNVVSWNSMIAG 118

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            ++  R+DEA + F  + + N  SW ++ISG  +  +V+E  RLF+ MP +  NV+S+T 
Sbjct: 119 CIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR--NVISYTA 176

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           +V G A  G I +            V+SWT M +G   N     A   F QMP+K+IVA 
Sbjct: 177 MVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            AMIT Y   G   +A  LF+ +P R++ +WNAMI  YA+NG    A+KL + M +    
Sbjct: 237 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296

Query: 238 PNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSL-----TYKCTCHYVFWDWGF 289
           P+ +T  S+LT+C  +    E    H L ++ G+E   S+     T  C C       G 
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC-------GS 349

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
            LD   + LAF +++  DVVSW AMI A++ HG   +    F  M  +  +PD ITF+ +
Sbjct: 350 ILD---SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSL 406

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C HAG V +    FN M  +Y   PR EH++CL DIL R GQV++A +++ +M P E
Sbjct: 407 LSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM-PFE 465

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D  + GALL AC +H +V++ +   ++++EL+P +SGAYV+ +N++AA G W E  +VR
Sbjct: 466 ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVR 525

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             M E+ VKK  ++S +E+  K H  L 
Sbjct: 526 GLMREQGVKKQPAYSWMEIDNKVHFFLG 553



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 161/382 (42%), Gaps = 66/382 (17%)

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
           L +  +V ++      L R      AR+ F +MP++D V+WN++IT Y   G   ++  L
Sbjct: 41  LFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRL 100

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE- 255
           F LMP +NV +WN+MI     +     A +    M Q R   +     S L   + + E 
Sbjct: 101 FGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQ-RNTASWNAMISGLVRYDRVEEA 159

Query: 256 ----------NMLAHALAI----RLGFEQETSLTYKCTCHYVFWDWGFQLD-------VN 294
                     N++++   +    ++G  ++    + C        W   +         +
Sbjct: 160 SRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFD 219

Query: 295 SARLAFERLEAKDVVSWTA-------------------------------MILAYSNHGH 323
            A   FE++  K++V+ TA                               MI  Y+ +G 
Sbjct: 220 EAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 279

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +  +L ++MLK G +PD  T + VL+ CS    +++GRKT  L+ ++ G++ R    +
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKS-GYESRISICN 338

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDH---VVLGALLGACRLHG--DVRMADYIGERL 438
            L  +  + G + +     S++   + DH   V   A++ A   HG  D  +A +   R 
Sbjct: 339 ALITMYCKCGSILD-----SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRS 393

Query: 439 IELQPSS-SGAYVLSANVHAAR 459
             ++P   +   +LSA  HA +
Sbjct: 394 NRVEPDGITFLSLLSACGHAGK 415


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 298/559 (53%), Gaps = 74/559 (13%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA KLFD M + D VS  +M++ + +N  + +A  +F  MP   RN ++ + ++  Y
Sbjct: 123 RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP--HRNSISWNGLLAAY 180

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           V  GR+ EAR++F+      + SW  L+ GY K   + + R+LFDRMP++  +V+SW T+
Sbjct: 181 VHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVR--DVISWNTM 238

Query: 129 VLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD----- 173
           + G A  G +++           +V +WT M +G  +N M   AR+YF +MP K+     
Sbjct: 239 ISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYN 298

Query: 174 --------------------------IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                                     I +WN MIT Y   G +AQA +LF++MPQR+  +
Sbjct: 299 AMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS 358

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           W A+I  YA+NG    A+ +   M +     N +T +  L++C  +    L    H   +
Sbjct: 359 WAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418

Query: 265 RLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           + GFE           + +KC               + A   FE +E KDVVSW  MI  
Sbjct: 419 KAGFETGCFVGNALLGMYFKCG------------STDEANDVFEGIEEKDVVSWNTMIAG 466

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y+ HG G Q   LF  M K+G KPDEIT VGVLS CSH+GL+++G + F  M R Y  KP
Sbjct: 467 YARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKP 526

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
            ++HY+C+ D+L RAG+++EA  ++  M P +      GALLGA R+HG+  + +   E 
Sbjct: 527 TSKHYTCMIDLLGRAGRLEEAENLMRNM-PFDPGAASWGALLGASRIHGNTELGEKAAEM 585

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-- 494
           + +++P +SG YVL +N++AA G W +  ++R KM E  V+KV  +S +EV+ K HT   
Sbjct: 586 VFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSV 645

Query: 495 ---LAPMREMGYVVLKEVD 510
                P ++  Y  L+E+D
Sbjct: 646 GDCFHPEKDRIYAFLEELD 664



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 212/435 (48%), Gaps = 27/435 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G    A ++F+ M +   VS  +MI+ +LRN     A  LF  MPE  R++ + + M+ 
Sbjct: 59  NGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPE--RDLFSWNVMLT 116

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+  R+ EA K+FD + + +V SW +++SGY +   VDE R +F++MP   +N +SW 
Sbjct: 117 GYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP--HRNSISWN 174

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++    HNG +          +  E+ISW  +  G  +  M   AR+ F +MP +D+++
Sbjct: 175 GLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVIS 234

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI+ Y   G+++QA  LFN  P R+V+TW AM+  Y +NG    A K  + M     
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----P 290

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           + NE +  ++L       + ++A  L   +     +S     T       +G    +  A
Sbjct: 291 VKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMIT------GYGQNGGIAQA 344

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  +D VSW A+I  Y+ +GH  +   +F  M + G   +  TF   LS C+  
Sbjct: 345 RKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADI 404

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             +E G++    + +A GF+      + L  +  + G   EA  V   +   E+D V   
Sbjct: 405 AALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEANDVFEGI--EEKDVVSWN 461

Query: 417 ALLGACRLHGDVRMA 431
            ++     HG  R A
Sbjct: 462 TMIAGYARHGFGRQA 476



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 51/289 (17%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           ++ +W   IS + +    D   R+F+ MP +                         +S+ 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRR-----------------------SSVSYN 81

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M +G  RNA   LAR+ F +MP +D+ +WN M+T YV    + +A +LF+LMP+++V +
Sbjct: 82  AMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVS 141

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           WNAM+  YA+NG    A ++ N       MP+  +      S  G+L      A  +  G
Sbjct: 142 WNAMLSGYAQNGFVDEAREVFNK------MPHRNS-----ISWNGLL------AAYVHNG 184

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSN 320
             +E    ++   ++    W   +        +  AR  F+R+  +DV+SW  MI  Y+ 
Sbjct: 185 RLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQ 244

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            G   Q  RLF          D  T+  ++S     G+V++ RK F+ M
Sbjct: 245 VGDLSQAKRLF----NESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM 289


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 294/530 (55%), Gaps = 57/530 (10%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           +EA  +FD+MS+ + +S   +++ ++ N  + +A  +F  MPE  RN+V+ +AM+ GYVK
Sbjct: 146 QEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE--RNVVSWTAMVRGYVK 203

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G + EA  +F ++ E NV SWT ++ G  +  ++DE  RLFD MP K  +VV+ T ++ 
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK--DVVTRTNMIG 261

Query: 131 GCAHNGLIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           G    G +           +  V+SWTTM TG  +N    +AR+ F  MP K+ V+W AM
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAM 321

Query: 181 ITAYVDAGNMAQASELFNLMPQRNV-------------------------------WTWN 209
           +  Y + G + +ASELFN MP ++V                                TW+
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIR 265
           AMI  Y R G E  A++L  +M +    PN  +  S+L+ C G L N+      HA  +R
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG-LANLDHGREIHAQLVR 440

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             F+ +  +       Y+        ++  A+  F+R   KDVV W ++I  Y+ HG G 
Sbjct: 441 SQFDLDVYVASVLLSMYIKCG-----NLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGV 495

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +  R+F  M  SG  PD++TFVGVLS CS+ G V+KG + FN M   Y  + + EHY+C+
Sbjct: 496 EALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ EAM ++ KM P E D ++ GALLGACR H  + +A+   ++L+ L+P +
Sbjct: 556 VDLLGRAGKLNEAMDLIEKM-PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN 614

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           +G ++L +N++A++G WD+ A++R+ M +RRV K    S I V+ K H  
Sbjct: 615 AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKF 664



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 194/414 (46%), Gaps = 64/414 (15%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQ------------- 104
           I++ +++I  Y + G++++AR VFDE+ + N+ SW S+++GYF+ ++             
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 105 ------------------VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE---- 142
                             ++E R +FDRMP   +NVVSWT +V G    G+I++ E    
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMP--ERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 143 ------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                 V+SWT M  GL +      A   F  MP KD+V    MI  Y   G + +A  L
Sbjct: 216 QMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGM 253
           F+ MP+RNV +W  MI  Y +N     A KL  +M +     NE + T++L   T+C  +
Sbjct: 276 FDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRL 331

Query: 254 LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
            E + L +A+ I+              C+ +   +G   +V  AR  F+++  KD  +W+
Sbjct: 332 DEASELFNAMPIK----------SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           AMI  Y   G       LF  M + G +P+  + + VLS C+    ++ GR+    + R+
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             F       S L  +  + G + +A +V  +     +D V+  +++     HG
Sbjct: 442 Q-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV--KDVVMWNSIITGYAQHG 492



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 39/277 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           FG  G+V +A ++FD+M + D  + ++MI V+ R      A  LFR M     + N  + 
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSL 415

Query: 62  SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            +++        +D  R++  ++    ++ +VY  + L+S Y K   + + +++FDR   
Sbjct: 416 ISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR--F 473

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
            +K+VV W +++ G A +GL  +   +      +G+               MP  D V +
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI---------------MP--DDVTF 516

Query: 178 NAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
             +++A    GN+ +  E+FN M      ++ +  +  M+D   R G    AM L+    
Sbjct: 517 VGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK-- 574

Query: 233 QSRFMPNETTCT---SILTSCEGMLENMLAHALAIRL 266
               MP E       ++L +C   ++  LA   A +L
Sbjct: 575 ----MPMEADAIIWGALLGACRTHMKLDLAEVAAKKL 607


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 298/554 (53%), Gaps = 61/554 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A  LF++M + D VS  +M++ F +N  + +A  +F  M    +N ++ + ++ 
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML--VKNEISWNGLLS 192

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+ GR+++AR++FD   +  + SW  L+ GY + +++D+ R LFDRMP++ K  +SW 
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDK--ISWN 250

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAM----TKL----------- 161
            ++ G A NGL+++           +V +WT M +G  +N M    T++           
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 162 ----------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           ARE F QMP+++  +WN M+T Y   GN+ QA  LF+ MPQR+ 
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HAL 262
            +W AMI  YA++G    A+ L   M +   + N +     L+SC  +    L    H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            ++ GF+     T     + +   +G    +  A   FE +  KD+VSW  MI  Y+ HG
Sbjct: 431 LVKAGFQ-----TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHG 485

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
            G +   LF  M K   KPD++T VGVLS CSH GLV+KG + FN M + YG    A+HY
Sbjct: 486 FGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHY 544

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
           +C+ D+L RAG++ EA+ ++  MP +  D    GALLGA R+HGD  + +   E++ E++
Sbjct: 545 TCMIDLLGRAGRLDEALNLMKSMPFYP-DAATWGALLGASRIHGDTELGEKAAEKVFEME 603

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA----- 496
           P +SG YVL +N++AA G W E  ++R KM ++ VKKV  +S +E++ K H         
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663

Query: 497 PMREMGYVVLKEVD 510
           P  E  Y  L+E+D
Sbjct: 664 PEAERIYAYLEELD 677



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 189/444 (42%), Gaps = 58/444 (13%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D V     I+ ++R      A ++F  M   +R+ V  +AMI GY+   + D ARKVF++
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM--RRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-- 141
           + + ++ SW  ++SGY K   +   R LF++MP   K+VVSW  ++ G A NG + +   
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARK 174

Query: 142 ---------------------------------------EVISWTTMCTGLERNAMTKLA 162
                                                  E++SW  +  G  R      A
Sbjct: 175 IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           R  F +MP +D ++WN MIT Y   G +++A  LF  +P R+V+ W AM+  + +NG   
Sbjct: 235 RSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLD 294

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A ++   M +   +         + S +      L   +  R      T +T    C  
Sbjct: 295 EATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG- 353

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    +++ A++ F+ +  +D +SW AMI  Y+  G   +   LF +M + G   +
Sbjct: 354 ---------NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
                  LS C+    +E G++    + +A GF+      + L  +  + G ++EA  V 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
             +   E+D V    ++     HG
Sbjct: 464 EDIT--EKDIVSWNTMIAGYARHG 485



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 161/369 (43%), Gaps = 63/369 (17%)

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           E++     I + ++  W   IS Y +  Q +    +F+ M  +                 
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----------------- 89

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
                   +++  M +G   N     AR+ F +MP++D+++WN M++ YV  GN++ A  
Sbjct: 90  ------STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARA 143

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGM 253
           LFN MP+++V +WNAM+  +A+NG    A K+ + M     + NE +   +L++    G 
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGR 199

Query: 254 LE-----------------NMLAHALAIRLGFEQETSLTYKCTCH-YVFWDW---GFQLD 292
           +E                 N L      +   +   SL  +      + W+    G+  +
Sbjct: 200 IEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQN 259

Query: 293 --VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ AR  FE L  +DV +WTAM+  +  +G   +  R+F  M     + +E+++  ++
Sbjct: 260 GLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMI 315

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           +    +  +EK R+ F+ M            ++ +     + G + +A  +  +MP  +R
Sbjct: 316 AGYVQSQQIEKARELFDQMP-----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMP--QR 368

Query: 411 DHVVLGALL 419
           D +   A++
Sbjct: 369 DCISWAAMI 377


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 303/590 (51%), Gaps = 101/590 (17%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+ + A KLFDEM + D VS   MI  ++RN +L KA  LF  MPE  R++ + + M+ 
Sbjct: 108 NGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLS 165

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY------------FKARQ---------- 104
           GY + G VD+AR VFD + E N  SW +L+S Y            FK+R+          
Sbjct: 166 GYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCL 225

Query: 105 ---------VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
                    + E R+ FD M   +++VVSW T++ G A +G I +           +V +
Sbjct: 226 LGGFVKKKKIVEARQFFDSM--NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           WT M +G  +N M + ARE F +MP ++ V+WNAM+  YV    M  A ELF++MP RNV
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV 343

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLM---------------------FQSRFM------- 237
            TWN MI  YA+ G    A  L + M                     F++  +       
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE 403

Query: 238 ---PNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ-----ETSLTYKCTCHYVFWD 286
               N ++ +S L++C  ++   L   L  RL   G+E         L   C C      
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG----- 458

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 +  A   F+ +  KD+VSW  MI  YS HG G    R F  M + G KPD+ T 
Sbjct: 459 -----SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH GLV+KGR+ F  M++ YG  P ++HY+C+ D+L RAG +++A  ++  M 
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM- 572

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P E D  + G LLGA R+HG+  +A+   +++  ++P +SG YVL +N++A+ G W +  
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           ++R +M ++ VKKV  +S IE++ K HT        P ++  +  L+E+D
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 187/431 (43%), Gaps = 81/431 (18%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I  Y++ GR +EA +VF  +   +  S+  +ISGY +  + +  R+LFD MP   +++VS
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP--ERDLVS 128

Query: 125 WTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           W  ++ G   N  + K           +V SW TM +G  +N     AR  F +MP K+ 
Sbjct: 129 WNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND 188

Query: 175 VAWNAMITAYVDAGNM-------------------------------AQASELFNLMPQR 203
           V+WNA+++AYV    M                                +A + F+ M  R
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR 248

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN------- 256
           +V +WN +I  YA++G    A +L    F    + +  T T++++   G ++N       
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQL----FDESPVQDVFTWTAMVS---GYIQNRMVEEAR 301

Query: 257 ----------------MLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNS 295
                           MLA +    R+   +E      C    T + +   +     ++ 
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+  F+++  +D VSW AMI  YS  GH F+  RLF +M + G + +  +F   LS C+ 
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
              +E G++    + +  G++      + L  +  + G ++EA  +  +M    +D V  
Sbjct: 422 VVALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG--KDIVSW 478

Query: 416 GALLGACRLHG 426
             ++     HG
Sbjct: 479 NTMIAGYSRHG 489



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 161/369 (43%), Gaps = 79/369 (21%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + ++  W   IS Y +  + +E  R+F RMP        W++V    ++NG+I       
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMP-------RWSSV----SYNGMI------- 102

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                +G  RN   +LAR+ F +MP +D+V+WN MI  YV   N+ +A ELF +MP+R+V
Sbjct: 103 -----SGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
            +WN M+  YA+NG    A  + + M +     N+ +  ++L++              ++
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSA-------------YVQ 200

Query: 266 LGFEQETSLTYKCTCHYVFWDW-----GF--QLDVNSARLAFERLEAKDVVSWTAMILAY 318
               +E  + +K   ++    W     GF  +  +  AR  F+ +  +DVVSW  +I  Y
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-----------N 367
           +  G   +  +LF          D  T+  ++S      +VE+ R+ F           N
Sbjct: 261 AQSGKIDEARQLF----DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN 316

Query: 368 LMSRAYGFKPRAEHYSCLADIL---------------RRAGQVKEAMRVVSKMPPHERDH 412
            M   Y    R E    L D++                + G++ EA  +  KMP  +RD 
Sbjct: 317 AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP--KRDP 374

Query: 413 VVLGALLGA 421
           V   A++  
Sbjct: 375 VSWAAMIAG 383


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 294/530 (55%), Gaps = 57/530 (10%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           +EA  +FD+MS+ + +S   +++ ++ N  + +A  +F  MPE  RN+V+ +AM+ GYVK
Sbjct: 146 QEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPE--RNVVSWTAMVRGYVK 203

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G + EA  +F ++ E NV SWT ++ G  +  ++DE  RLFD MP K  +VV+ T ++ 
Sbjct: 204 EGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK--DVVTRTNMIG 261

Query: 131 GCAHNGLIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           G    G +           +  V+SWTTM TG  +N    +AR+ F  MP K+ V+W AM
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAM 321

Query: 181 ITAYVDAGNMAQASELFNLMPQRNV-------------------------------WTWN 209
           +  Y + G + +ASELFN MP ++V                                TW+
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIR 265
           AMI  Y R G E  A++L  +M +    PN  +  S+L+ C G L N+      HA  +R
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG-LANLDHGREIHAQLVR 440

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             F+ +  +       Y+        ++  A+  F+R   KDVV W ++I  Y+ HG G 
Sbjct: 441 SQFDLDVYVASVLLSMYIKCG-----NLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGV 495

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +  R+F  M  SG  PD++TFVGVLS CS+ G V+KG + FN M   Y  + + EHY+C+
Sbjct: 496 EALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ EAM ++ KM P E D ++ GALLGACR H  + +A+   ++L+ L+P +
Sbjct: 556 VDLLGRAGKLNEAMDLIEKM-PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN 614

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           +G ++L +N++A++G WD+ A++R+ M +RRV K    S I V+ K H  
Sbjct: 615 AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKF 664



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 194/414 (46%), Gaps = 64/414 (15%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQ------------- 104
           I++ +++I  Y + G++++AR VFDE+ + N+ SW S+++GYF+ ++             
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 105 ------------------VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE---- 142
                             ++E R +FDRMP   +NVVSWT +V G    G+I++ E    
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMP--ERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 143 ------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                 V+SWT M  GL +      A   F  MP KD+V    MI  Y   G + +A  L
Sbjct: 216 QMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGM 253
           F+ MP+RNV +W  MI  Y +N     A KL  +M +     NE + T++L   T+C  +
Sbjct: 276 FDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRL 331

Query: 254 LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
            E + L +A+ I+              C+ +   +G   +V  AR  F+++  KD  +W+
Sbjct: 332 DEASELFNAMPIK----------SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           AMI  Y   G       LF  M + G +P+  + + VLS C+    ++ GR+    + R+
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             F       S L  +  + G + +A +V  +     +D V+  +++     HG
Sbjct: 442 Q-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAV--KDVVMWNSIITGYAQHG 492



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 39/277 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           FG  G+V +A ++FD+M + D  + ++MI V+ R      A  LFR M     + N  + 
Sbjct: 356 FGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSL 415

Query: 62  SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            +++        +D  R++  ++    ++ +VY  + L+S Y K   + + +++FDR   
Sbjct: 416 ISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR--F 473

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
            +K+VV W +++ G A +GL  +   +      +G+               MP  D V +
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI---------------MP--DDVTF 516

Query: 178 NAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
             +++A    GN+ +  E+FN M      ++ +  +  M+D   R G    AM L+    
Sbjct: 517 VGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK-- 574

Query: 233 QSRFMPNETTCT---SILTSCEGMLENMLAHALAIRL 266
               MP E       ++L +C   ++  LA   A +L
Sbjct: 575 ----MPMEADAIIWGALLGACRTHMKLDLAEVAAKKL 607


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 294/527 (55%), Gaps = 48/527 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G +  + +A  LFDEM   D VS   MI+    +  +  A   F   PE  ++ V+ + 
Sbjct: 107 LGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPE--KDAVSWNG 164

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+  Y++ GR+ EAR +FD   E +  SW +L++GY +  Q++E +++F+RMP +  +VV
Sbjct: 165 MLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQR--DVV 222

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW T+V G A  G +A+           +V +WT + +G  +N M + A+  F  MP K+
Sbjct: 223 SWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKN 282

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V+WNAM+ AYV    M +A ELF+ MP RNV +WN M+  YA+ G    A  + ++M Q
Sbjct: 283 AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQ 342

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK----CTCHYVFWDWGF 289
                +  +  ++L +               + GF +ET   +K    C  ++   +   
Sbjct: 343 K----DAVSWAAMLAAYS-------------QGGFSEETLQLFKEMGRCAMYFKCGN--- 382

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A  AFE +E +D+VSW  MI  Y+ HG G +   +F  M K+ TKPD+IT VGV
Sbjct: 383 ---MEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGV 439

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH+GLVEKG   F  M R +G   + EHY+C+ D+L RAG++ EA+ ++  M P E
Sbjct: 440 LAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDM-PFE 498

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D  + GALLGA R+H +  +     E++ EL+P ++G YVL +N++A+ G+W +  ++R
Sbjct: 499 PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMR 558

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
             M ER VKKV  FS IEV+ K HT      + P RE  Y  L+++D
Sbjct: 559 LMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFLEDLD 605



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 27/341 (7%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G ++EA ++FD M + + VS  +M+  +++   + +A+ LF AMP   RN+ +
Sbjct: 259 VSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMP--CRNVAS 316

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            + M+ GY +AG +DEAR +FD + + +  SW ++++ Y +    +E  +LF  M    +
Sbjct: 317 WNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMG---R 373

Query: 121 NVVSWTTVVLGCAHNGL--IAKLEVISWTTMCTGLERNAMTKLAREYFVQM----PNKDI 174
             + +    +  AH+    + + +++SW TM  G  R+   K A E F  M       D 
Sbjct: 374 CAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDD 433

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAMKLLN 229
           +    ++ A   +G + +    F  M +    T     +  MID   R G    A   +N
Sbjct: 434 ITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEA---VN 490

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWG 288
           LM    F P+ T   ++L +      + L    A ++   E E +  Y    + ++   G
Sbjct: 491 LMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSN-IYASSG 549

Query: 289 FQLDVNSARLAFERLEAKDV--VSWTAMILAYSNHGHGFQV 327
              DV+  RL       K V   SW    +   N  H F V
Sbjct: 550 KWRDVDKMRLMMHERGVKKVPGFSW----IEVQNKVHTFSV 586



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 142/335 (42%), Gaps = 72/335 (21%)

Query: 37  RNHDLP--KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
           R+H  P   A+A     P+++  ++  +  I  +++AGRV +A ++F  +   +  ++ +
Sbjct: 14  RSHRRPAAPADACITGKPDAE--VIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNA 71

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           ++ GY    ++      F  +P                       + +  S+ T+   L 
Sbjct: 72  MLGGYAANGRLTLALSFFRSIP-----------------------RPDSFSYNTLLHALG 108

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            ++    AR  F +MP KD V++N MI+++ + G ++ A   F+L P+++  +WN M+  
Sbjct: 109 VSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA 168

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL 274
           Y RNG    A  L    F SR            T  + +  N      A+  G+ Q    
Sbjct: 169 YIRNGRIQEARDL----FDSR------------TEWDAISWN------ALMAGYVQ---- 202

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
              C+             +  A+  F R+  +DVVSW  M+  ++  G   +  RLF   
Sbjct: 203 ---CS------------QIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLF--- 244

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
                  D  T+  V+S  +  G++E+ ++ F+ M
Sbjct: 245 -DVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAM 278



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 56/274 (20%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P+ +++  N  ITA++ AG +  A  LF  M +R+  T+NAM+  YA NG    A+    
Sbjct: 31  PDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSF-- 88

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
             F+S   P+  +  ++L            HAL                         G 
Sbjct: 89  --FRSIPRPDSFSYNTLL------------HAL-------------------------GV 109

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  AR  F+ +  KD VS+  MI +++NHG    +  L         + D +++ G+
Sbjct: 110 SSSLADARALFDEMPVKDSVSYNVMISSHANHG----LVSLARHYFDLAPEKDAVSWNGM 165

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+     G +++ R  F+  SR    +  A  ++ L     +  Q++EA ++ ++MP  +
Sbjct: 166 LAAYIRNGRIQEARDLFD--SRT---EWDAISWNALMAGYVQCSQIEEAQKMFNRMP--Q 218

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           RD V    ++      GD+  A     RL ++ P
Sbjct: 219 RDVVSWNTMVSGHARRGDMAEA----RRLFDVAP 248


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 297/554 (53%), Gaps = 61/554 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A  LF++M + D VS  +M++ F +N  + +A  +F  M    +N ++ + ++ 
Sbjct: 135 NGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML--VKNEISWNGLLS 192

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+ GR+++AR++FD   +  + SW  L+ GY + +++D+ R LFDRMP++ K  +SW 
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDK--ISWN 250

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAM----TKL----------- 161
            ++ G A NGL+++           +V +WT M +G  +N M    T++           
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310

Query: 162 ----------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           ARE F QMP+++  +WN M+T Y   GN+ QA  LF+ MPQR+ 
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HAL 262
            +W AMI  YA++G    A+ L   M +   + N +     L+SC  +    L    H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            ++ GF+     T     + +   +G    +  A   FE +  KD+VSW  MI  Y+ HG
Sbjct: 431 LVKAGFQ-----TGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHG 485

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
            G +   LF  M K   KPD++T VGVLS CSH G V+KG + FN M + YG    A+HY
Sbjct: 486 FGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHY 544

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
           +C+ D+L RAG++ EA+ ++  MP +  D    GALLGA R+HGD  + +   E++ E++
Sbjct: 545 TCMIDLLGRAGRLDEALNLMKSMPFYP-DAATWGALLGASRIHGDTELGEKAAEKVFEME 603

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA----- 496
           P +SG YVL +N++AA G W E  ++R KM ++ VKKV  +S +E++ K H         
Sbjct: 604 PDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSH 663

Query: 497 PMREMGYVVLKEVD 510
           P  E  Y  L+E+D
Sbjct: 664 PEAERIYAYLEELD 677



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 189/444 (42%), Gaps = 58/444 (13%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D V     I+ ++R      A ++F  M   +R+ V  +AMI GY+   + D ARKVF++
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM--RRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-- 141
           + + ++ SW  ++SGY K   +   R LF++MP   K+VVSW  ++ G A NG + +   
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARK 174

Query: 142 ---------------------------------------EVISWTTMCTGLERNAMTKLA 162
                                                  E++SW  +  G  R      A
Sbjct: 175 IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           R  F +MP +D ++WN MIT Y   G +++A  LF  +P R+V+ W AM+  + +NG   
Sbjct: 235 RSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLD 294

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A ++   M +   +         + S +      L   +  R      T +T    C  
Sbjct: 295 EATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG- 353

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    +++ A++ F+ +  +D +SW AMI  Y+  G   +   LF +M + G   +
Sbjct: 354 ---------NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
                  LS C+    +E G++    + +A GF+      + L  +  + G ++EA  V 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
             +   E+D V    ++     HG
Sbjct: 464 EDIT--EKDIVSWNTMIAGYARHG 485



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 161/369 (43%), Gaps = 63/369 (17%)

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           E++     I + ++  W   IS Y +  Q +    +F+ M  +                 
Sbjct: 47  ESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----------------- 89

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
                   +++  M +G   N     AR+ F +MP++D+++WN M++ YV  GN++ A  
Sbjct: 90  ------STVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARA 143

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGM 253
           LFN MP+++V +WNAM+  +A+NG    A K+ + M     + NE +   +L++    G 
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGR 199

Query: 254 LE-----------------NMLAHALAIRLGFEQETSLTYKCTCH-YVFWDW---GFQLD 292
           +E                 N L      +   +   SL  +      + W+    G+  +
Sbjct: 200 IEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQN 259

Query: 293 --VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ AR  FE L  +DV +WTAM+  +  +G   +  R+F  M     + +E+++  ++
Sbjct: 260 GLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMI 315

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           +    +  +EK R+ F+ M            ++ +     + G + +A  +  +MP  +R
Sbjct: 316 AGYVQSQQIEKARELFDQMP-----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMP--QR 368

Query: 411 DHVVLGALL 419
           D +   A++
Sbjct: 369 DCISWAAMI 377



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 126/316 (39%), Gaps = 56/316 (17%)

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           WT  +     +  I   +++ W    +   R    + A   F  M  +  V +NAMI+ Y
Sbjct: 42  WTQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGY 101

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM------------- 231
           +       A ++F  MP R++ +WN M+  Y +NG   AA  L N M             
Sbjct: 102 LSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 232 --------------FQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETS-- 273
                         F    + NE +   +L++    G +E+      A RL F+ +    
Sbjct: 162 GFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIED------ARRL-FDSKMDWE 214

Query: 274 -LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +++ C    +   +  +  ++ AR  F+R+  +D +SW  MI  Y+ +G   +  RLF 
Sbjct: 215 IVSWNC----LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFE 270

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI--LR 390
            +       D   +  ++S     G++++  + F  M       P     S  A I    
Sbjct: 271 EL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEM-------PEKNEVSWNAMIAGYV 319

Query: 391 RAGQVKEAMRVVSKMP 406
           ++ Q+++A  +  +MP
Sbjct: 320 QSQQIEKARELFDQMP 335


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/533 (34%), Positives = 294/533 (55%), Gaps = 39/533 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G VKEA ++FDEM   + +S   M+  +++N  +  A  LF +  + +  +++ 
Sbjct: 150 SGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWE--LISW 207

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + M+ GYVK  R+ +AR +FD + E +  SW ++ISGY +  ++ E +RLF+  P++  +
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR--D 265

Query: 122 VVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           V +WT +V G   NG++           +   +SW  +  G  +      ARE F  MP 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 325

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +++ +WN MIT Y   G++AQA   F+ MPQR+  +W A+I  YA++G    A+ L   M
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQ-----ETSLTYKCTCHYV 283
            +     N +T TS L++C  +    L    H   ++ G E         L   C C   
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCG-- 443

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                   +++ A + FE +E K+VVSW  MI  Y+ HG G +   LF  M K+G  PD+
Sbjct: 444 --------NIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 495

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +T VGVLS CSH GLV+KG + F  M++ YG    ++HY+C+ D+L RAG++ +A  ++ 
Sbjct: 496 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 555

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P E D    GALLGA R+HG+  + +   + + E++P +SG YVL +N++AA G W 
Sbjct: 556 NM-PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWG 614

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           +  ++R +M +R VKKV  +S +EV+ K HT      + P R+  Y  L+E+D
Sbjct: 615 DVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELD 667



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 186/390 (47%), Gaps = 49/390 (12%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80
           +  D V     IT  +RN     A  LF +MP  +R+ ++ +AMI G +   +   AR++
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMP--RRSSISWNAMISGCLSNDKFYLARQL 102

Query: 81  FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK 140
           F+++   ++ SW  +ISG  + R +   R LFD+MP   ++VVSW  ++ G A NG + +
Sbjct: 103 FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMP--ERDVVSWNAMLSGYAQNGYVKE 160

Query: 141 LE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            +           ISW  M     +N   + AR  F    + ++++WN M+  YV    +
Sbjct: 161 AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRL 220

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A  +F+ MP+R+  +WN MI  YA+NG    A +L    F+   + +  T T++++  
Sbjct: 221 VDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL----FEESPVRDVFTWTAMVS-- 274

Query: 251 EGMLEN-MLAHALAIRLGFEQETSLTY--------KCT-------------CHYV-FWD- 286
            G ++N ML  A  +  G  ++ S+++        +C              C  V  W+ 
Sbjct: 275 -GYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNT 333

Query: 287 ----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
               +    D+  AR  F+R+  +D +SW A+I  Y+  G+G +   LF  M + G + +
Sbjct: 334 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLN 393

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
             TF   LS C+    +E G++    + +A
Sbjct: 394 RSTFTSTLSTCAEIAALELGKQVHGRVVKA 423



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 59/271 (21%)

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG-------- 188
           L    +++ W    T   RN     A   F  MP +  ++WNAMI+  +           
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 189 -----------------------NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
                                  N+  A  LF+ MP+R+V +WNAM+  YA+NG    A 
Sbjct: 103 FEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAK 162

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           ++           +E  C + + S  GML      A  ++ G  ++    ++    +   
Sbjct: 163 EIF----------DEMPCKNSI-SWNGML------AAYVQNGRIEDARRLFESKADWELI 205

Query: 286 DWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            W   +        +  AR  F+R+  +D VSW  MI  Y+ +G   +  RLF    +  
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF----EES 261

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
              D  T+  ++S     G++++ R+ F+ M
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 292


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/533 (34%), Positives = 294/533 (55%), Gaps = 39/533 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G VKEA ++FDEM   + +S   M+  +++N  +  A  LF +  + +  +++ 
Sbjct: 69  SGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWE--LISW 126

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + M+ GYVK  R+ +AR +FD + E +  SW ++ISGY +  ++ E +RLF+  P++  +
Sbjct: 127 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR--D 184

Query: 122 VVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           V +WT +V G   NG++           +   +SW  +  G  +      ARE F  MP 
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 244

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +++ +WN MIT Y   G++AQA   F+ MPQR+  +W A+I  YA++G    A+ L   M
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQ-----ETSLTYKCTCHYV 283
            +     N +T TS L++C  +    L    H   ++ G E         L   C C   
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCG-- 362

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                   +++ A + FE +E K+VVSW  MI  Y+ HG G +   LF  M K+G  PD+
Sbjct: 363 --------NIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 414

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +T VGVLS CSH GLV+KG + F  M++ YG    ++HY+C+ D+L RAG++ +A  ++ 
Sbjct: 415 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 474

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P E D    GALLGA R+HG+  + +   + + E++P +SG YVL +N++AA G W 
Sbjct: 475 NM-PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWG 533

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           +  ++R +M +R VKKV  +S +EV+ K HT      + P R+  Y  L+E+D
Sbjct: 534 DVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELD 586



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 89/336 (26%)

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155
           + G  + R +   R LFD+MP +                       +V+SW  M +G  +
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPER-----------------------DVVSWNAMLSGYAQ 73

Query: 156 NAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL------------------- 196
           N   K A+E F +MP K+ ++WN M+ AYV  G +  A  L                   
Sbjct: 74  NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGY 133

Query: 197 ------------FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
                       F+ MP+R+  +WN MI  YA+NG    A +L    F+   + +  T T
Sbjct: 134 VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL----FEESPVRDVFTWT 189

Query: 245 SILTSCEGMLEN-MLAHALAIRLGFEQETSLTY--------KCT-------------CHY 282
           ++++   G ++N ML  A  +  G  ++ S+++        +C              C  
Sbjct: 190 AMVS---GYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQN 246

Query: 283 V-FWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           V  W+     +    D+  AR  F+R+  +D +SW A+I  Y+  G+G +   LF  M +
Sbjct: 247 VSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKR 306

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            G + +  TF   LS C+    +E G++    + +A
Sbjct: 307 DGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA 342



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++ +ARL F+++  +DVVSW AM+  Y+ +G+  +   +F  M       + I++ G+L+
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLA 100

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
                G +E  R+ F   S+A         ++C+     +  ++ +A  +  +MP  ERD
Sbjct: 101 AYVQNGRIEDARRLFE--SKA---DWELISWNCMMGGYVKRNRLVDARGIFDRMP--ERD 153

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            V    ++     +G++  A    +RL E  P
Sbjct: 154 EVSWNTMISGYAQNGELLEA----QRLFEESP 181


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/499 (38%), Positives = 283/499 (56%), Gaps = 23/499 (4%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G V +A K+FD M + + VS  SM+  +++   + +AE LF  MP  +RN+V+ + MI 
Sbjct: 96  NGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP--RRNVVSWTVMIG 153

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +K  R+D+A+K+FD I E +V   T++I GY +  ++DE R LFD M  K++NV +WT
Sbjct: 154 GLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEM--KVRNVFTWT 211

Query: 127 TVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T+V G A NG          ++ +   +SWT M  G  ++   K A E F  MP K IVA
Sbjct: 212 TMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVA 271

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N MI  +  AG M +A  +F  M +R+  TWNAMI  + R G +  A+ L   M +   
Sbjct: 272 CNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGV 331

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             N  +  S+L+ C  +         HA  +R  F+Q+  +       YV        D+
Sbjct: 332 ALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCG-----DL 386

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A+  F R   KDVV W +MI  YS HG G +   +F  M  SG +PDE+TF+GVLS C
Sbjct: 387 VRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSAC 446

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S++G V++G + F  M   Y  +P  EHY+C+ D+L RAG+V EAM +V KM P E D +
Sbjct: 447 SYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKM-PMEPDAI 505

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           V GALLGACR H  + +A+   E+L +L+P ++G YVL ++++A +G W +   +RKK+ 
Sbjct: 506 VWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKIN 565

Query: 474 RRVKKVASFSQIEVKGKDH 492
           RRV K    S IEV+ K H
Sbjct: 566 RRVIKFPGCSWIEVEKKVH 584


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 287/507 (56%), Gaps = 34/507 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A ++FDEM   D VS  S+IT + +N    +++ LF  MP   +N+V+ ++MI G
Sbjct: 61  GNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMP--TKNVVSWNSMIAG 118

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            ++  R+DEA + F  + + N  SW ++ISG  +  +V+E  RLF+ MP +  NV+S+T 
Sbjct: 119 CIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR--NVISYTA 176

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           +V G A  G I +            V+SWT M +G   N     A   F QMP+K+IVA 
Sbjct: 177 MVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            AMIT Y   G   +A  LF+ +P R++ +WNAMI  YA+NG    A+KL + M +    
Sbjct: 237 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296

Query: 238 PNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSL-----TYKCTCHYVFWDWGF 289
           P+ +T  S+LT+C  +    E    H L ++ G+E   S+     T  C C       G 
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC-------GS 349

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
            LD   + LAF +++  DVVSW AMI A++ HG   +    F  M  +  +PD ITF+ +
Sbjct: 350 ILD---SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSL 406

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C HAG V +    FN M  +Y    R EH++CL DIL R GQV++A +++ +M P E
Sbjct: 407 LSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEM-PFE 465

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D  + GALL AC +H +V++ +   ++++EL+P +SGAYV+ +N++AA G W E  +VR
Sbjct: 466 ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVR 525

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLL 495
             M E+ VKK  ++S +E+  K H  L
Sbjct: 526 GLMREQGVKKQPAYSWMEIDNKVHFFL 552



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 161/382 (42%), Gaps = 66/382 (17%)

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
           L +  +V ++      L R      AR+ F +MP++D V+WN++IT Y   G   ++  L
Sbjct: 41  LFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRL 100

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE- 255
           F LMP +NV +WN+MI     +     A +    M Q R   +     S L   + + E 
Sbjct: 101 FGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQ-RNTASWNAMISGLVRYDRVEEA 159

Query: 256 ----------NMLAHALAI----RLGFEQETSLTYKCTCHYVFWDWGFQLD-------VN 294
                     N++++   +    ++G  ++    + C        W   +         +
Sbjct: 160 SRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFD 219

Query: 295 SARLAFERLEAKDVVSWTA-------------------------------MILAYSNHGH 323
            A   FE++  K++V+ TA                               MI  Y+ +G 
Sbjct: 220 EAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 279

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +  +L ++MLK G +PD  T + VL+ CS    +++GRKT  L+ ++ G++ R    +
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKS-GYESRISICN 338

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDH---VVLGALLGACRLHG--DVRMADYIGERL 438
            L  +  + G +     + S++   + DH   V   A++ A   HG  D  +A +   R 
Sbjct: 339 ALITMYCKCGSI-----LDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRS 393

Query: 439 IELQPSS-SGAYVLSANVHAAR 459
             ++P   +   +LSA  HA +
Sbjct: 394 NRVEPDGITFLSLLSACGHAGK 415


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 291/540 (53%), Gaps = 54/540 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           ++    G+V +A +LFD     D VS  +++  +     L  A ALF   P+++RN+V  
Sbjct: 43  AELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-RPDARRNVVTW 101

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY---------------------- 99
           +A++ GY +AGRVDEA  +F  + E NV SW +++  Y                      
Sbjct: 102 TALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAG 161

Query: 100 ---------FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL--------- 141
                     ++  +D+ R+LFDRMP +  NV++WTT+V G A +G + +          
Sbjct: 162 SWNILLAALVRSGNIDKARKLFDRMPER--NVMAWTTMVAGIARSGSVNEARALFDGMPE 219

Query: 142 -EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
             V+SW  M +G  RN M   A + F++MP +DI +WN MIT ++   N+ +A ELF+ M
Sbjct: 220 RNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKM 279

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENM 257
           P+RNV TW  M++ Y ++     A++L N M      PN+ T    + +C    G+ E  
Sbjct: 280 PRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQ 339

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             H +  +  F+ +T +  + T   ++   G   ++  AR  F   + KDV+SW  MI A
Sbjct: 340 QVHQMICKTPFQFDTFI--ESTLMNLYAKCG---EIILARKVFNLSKEKDVISWNGMIAA 394

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y++HG G +   L+ +M ++G KP+++T+VG+LS CSH+GLV++G + F  M +      
Sbjct: 395 YAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAV 454

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
           R EHY+CL D+  RAG++ +A R++  +   E    V  ALLG C  HG+  + D     
Sbjct: 455 RDEHYTCLIDLCSRAGRLGDAKRLIHFLKV-EPSSTVWNALLGGCNSHGNESIGDLAARN 513

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L+E +P+++G Y L  N++A+ G+W E A++R +M +R +KK    S IEV  K H  ++
Sbjct: 514 LLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVS 573



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 59/260 (22%)

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           VQ PN+ +    A       AG ++ A  LF+  P R+V +W A++  YA          
Sbjct: 35  VQDPNRRVAELAA-------AGRVSDARRLFDRTPDRDVVSWTALVAAYA---------- 77

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
                                  C+GML +  A AL     F++  +     T   +   
Sbjct: 78  -----------------------CQGMLHD--ARAL-----FDRPDARRNVVTWTALLSG 107

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +     V+ A   F R+  ++VVSW  M+ AY++ G       LF  M       D  ++
Sbjct: 108 YARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGM----PVRDAGSW 163

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             +L+    +G ++K RK F+ M      +     ++ +   + R+G V EA  +   MP
Sbjct: 164 NILLAALVRSGNIDKARKLFDRMP-----ERNVMAWTTMVAGIARSGSVNEARALFDGMP 218

Query: 407 PHERDHVVLGALL-GACRLH 425
             ER+ V   A++ G  R H
Sbjct: 219 --ERNVVSWNAMISGYARNH 236


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 292/541 (53%), Gaps = 54/541 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            ++    G+V +A +LFD     D VS  +++  + R   L  A ALF   P+++RN+V 
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD-RPDARRNVVT 100

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV--------------- 105
            +A++ GY +AGRVDEA  +F  + E NV SW +++  Y  A +V               
Sbjct: 101 WTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDA 160

Query: 106 ----------------DEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI----------A 139
                           D+ R+LFDRMP +  NV++WTT+V G A +G +           
Sbjct: 161 GSWNILLAALVRSGNMDKARKLFDRMPER--NVMAWTTMVAGIARSGSVDEARALFDGMP 218

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           +  V+SW  M +G  RN     A + F++MP +DI +WN MIT ++   ++ +A +LF+ 
Sbjct: 219 ERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDK 278

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLEN 256
           MP+RNV TW  M++ Y ++     A+++ N M      PN+ T    + +C    G+ E 
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H +  +  F+ +T +  + T   ++   G   ++  AR  F+  + KDV+SW  MI 
Sbjct: 339 QQVHQMICKTSFQFDTFI--ESTLMNLYAKCG---EIRLARKVFDLSKEKDVISWNGMIA 393

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           AY++HG G +   L+ +M + G KP+++T+VG+LS CSH+GLV++G + F  M +     
Sbjct: 394 AYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIA 453

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
            R EHY+CL D+  RAG++ +A R++  +   E    V  ALLG C  HG+  + D    
Sbjct: 454 VRDEHYTCLIDLCSRAGRLGDAKRLIHFLKV-EPSSTVWNALLGGCNSHGNESIGDLAAR 512

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            L+E +P+++G Y L  N++A+ G+W E A++R +M +R +KK    S IEV+ K H  +
Sbjct: 513 NLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFV 572

Query: 496 A 496
           +
Sbjct: 573 S 573



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 59/260 (22%)

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           VQ PN+ +    A       AG ++ A  LF+  P R+V +W A++  YAR G    A  
Sbjct: 35  VQDPNRRVAELAA-------AGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARA 87

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           L +     R   N  T T++L+           +A A R                     
Sbjct: 88  LFDRPDARR---NVVTWTALLS----------GYARAGR--------------------- 113

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 V+ A   F+R+  ++VVSW  M+ AY++ G     + LF  M       D  ++
Sbjct: 114 ------VDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGM----PVRDAGSW 163

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             +L+    +G ++K RK F+ M      +     ++ +   + R+G V EA  +   MP
Sbjct: 164 NILLAALVRSGNMDKARKLFDRMP-----ERNVMAWTTMVAGIARSGSVDEARALFDGMP 218

Query: 407 PHERDHVVLGALL-GACRLH 425
             ER+ V   A++ G  R H
Sbjct: 219 --ERNVVSWNAMISGYARNH 236


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 299/564 (53%), Gaps = 74/564 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G +  + +   LFDEM   D VS   MI+    +  +  A   F   PE  ++ V+ + 
Sbjct: 179 LGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPE--KDAVSWNG 236

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+  YV+ GR+ EAR++FD   E +  SW +L++GY +  Q++E +++F++MP +  +VV
Sbjct: 237 MLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR--DVV 294

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW T+V G A  G +A+           +V +WT + +G  +N M + A+  F  MP+K+
Sbjct: 295 SWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN 354

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V+WNAM+ AYV    M +A ELF+ MP RNV +WN M+  YA+ G    A  +  +M Q
Sbjct: 355 AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ 414

Query: 234 SRFMP-------------------------------NETTCTSILTSCEGM--LE-NMLA 259
              +                                N +    +L++C  +  LE  M  
Sbjct: 415 KDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 474

Query: 260 HALAIRLGF-------EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           H+  I+ G+           ++ +KC              +  A  AFE +E +DVVSW 
Sbjct: 475 HSRLIKAGYGVGCFVGNALLAMYFKCG------------SMEEAHSAFEEMEERDVVSWN 522

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            MI  Y+ HG G +   +F  M K+ TKPD+IT VGVL+ CSH+GLVEKG   F  M R 
Sbjct: 523 TMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRD 582

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           +G   + EHY+C+ D+L RAG++ EA+ ++  M P E D  + GALLGA R+H +  +  
Sbjct: 583 FGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDM-PFEPDSTMWGALLGASRIHRNSELGR 641

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKD 491
              E++ EL+P ++G YVL +N++A+ G+W +  ++R  M ER VKKV  FS IEV+ K 
Sbjct: 642 NAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKV 701

Query: 492 HTL-----LAPMREMGYVVLKEVD 510
           HT      + P RE  Y  L+++D
Sbjct: 702 HTFSVGDSVHPEREDIYAFLEDLD 725



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 188/452 (41%), Gaps = 90/452 (19%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           IT  +R   +P AE LF AMP  +R+    + M+ GY   GR+ +A   F  I   + +S
Sbjct: 114 ITAHMRAGRVPDAERLFAAMP--RRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFS 171

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           + +L+     +  + + R LFD MP+K  + VS+  ++   A++GL++            
Sbjct: 172 YNTLLHALGVSSSLADVRALFDEMPVK--DSVSYNVMISSHANHGLVS------------ 217

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL--------------- 196
                    LAR YF   P KD V+WN M+ AYV  G + +A EL               
Sbjct: 218 ---------LARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNAL 268

Query: 197 ----------------FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
                           FN MPQR+V +WN M+  YAR G    A +L    F    + + 
Sbjct: 269 MAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRL----FDVAPIRDV 324

Query: 241 TTCTSILT--SCEGMLE-----------------NMLAHALAIRLGFEQETSLTYKCTCH 281
            T T+I++  +  GMLE                 N +  A   R   E+   L     C 
Sbjct: 325 FTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR 384

Query: 282 YVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
            V   W   L        ++ AR  F  +  KD VSW AM+ AYS  G   +  +LF  M
Sbjct: 385 NVA-SWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G   +   F  VLS C+    +E G +  + + +A G+       + L  +  + G 
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKA-GYGVGCFVGNALLAMYFKCGS 502

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           ++EA     +M   ERD V    ++     HG
Sbjct: 503 MEEAHSAFEEM--EERDVVSWNTMIAGYARHG 532



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 150/288 (52%), Gaps = 24/288 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G + EA +LFD     D  +  ++++ + +N  L +A+ +F AMP+  +N V+
Sbjct: 300 VSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD--KNAVS 357

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+  YV+   ++EA+++FD +   NV SW ++++GY +A  +DE R +F  MP   K
Sbjct: 358 WNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP--QK 415

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTG-LERNAMTKL--------AREYFVQMP 170
           + VSW  ++   +  G   + L++      C   + R+A   +        A E  +Q+ 
Sbjct: 416 DAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 475

Query: 171 NKDIVA--------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           ++ I A         NA++  Y   G+M +A   F  M +R+V +WN MI  YAR+G   
Sbjct: 476 SRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGK 535

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGF 268
            A+++ + M ++   P++ T   +L +C   G++E  +++  ++   F
Sbjct: 536 EALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDF 583



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 56/274 (20%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P+ +++  N  ITA++ AG +  A  LF  MP+R+  T+N M+  YA NG          
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANG---------- 152

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                                       L  AL+      +  S +Y    H +    G 
Sbjct: 153 ---------------------------RLPQALSFFRSIPRPDSFSYNTLLHAL----GV 181

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +   R  F+ +  KD VS+  MI +++NHG    +  L         + D +++ G+
Sbjct: 182 SSSLADVRALFDEMPVKDSVSYNVMISSHANHG----LVSLARHYFDLAPEKDAVSWNGM 237

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+     G +++ R+ F+  +        A     +A  ++R+ Q++EA ++ +KMP  +
Sbjct: 238 LAAYVRNGRIQEARELFDSRTEWDAISWNA----LMAGYVQRS-QIEEAQKMFNKMP--Q 290

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           RD V    ++      GD+  A     RL ++ P
Sbjct: 291 RDVVSWNTMVSGYARRGDMAEA----RRLFDVAP 320


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/504 (35%), Positives = 286/504 (56%), Gaps = 24/504 (4%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  + + F+++  P+ VS  +M+  F R   + +A  LF  MP   RN+VA +AMI 
Sbjct: 215 VGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMP--IRNVVAWNAMIA 272

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+   VDEA  +F E+ E N  SWT++I+GY +  ++DE R+L ++MP +  NV + T
Sbjct: 273 AYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR--NVAAQT 330

Query: 127 TVVLGCAHN----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G   N            I+  +V+ W TM  G  +      A   F QM  KDIV+
Sbjct: 331 AMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVS 390

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN M+ +Y   G M  A ++F  M ++N+ +WN++I    +NG    A+K   LM     
Sbjct: 391 WNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQ 450

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+++T    L+SC  +    +    H L ++ G+  +  ++      Y          +
Sbjct: 451 KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCG-----SI 505

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           +SA L F+ ++  DVVSW ++I AY+ +G+G +  +LF +M   G  PDE+TFVG+LS C
Sbjct: 506 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSAC 565

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH GL+++G K F  M +AY  +P AEHY+C+ D+L RAG+++EA ++V  M  +  +  
Sbjct: 566 SHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINA-NAG 624

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           + GALLGACR+HG++ +A +  E+L+E +P  +  YVL +N+ A  G WDE A+VR+ M 
Sbjct: 625 IWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMK 684

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           E+  +K   +S IE++ + H  L+
Sbjct: 685 EKGAEKQPGWSWIELQNRVHAFLS 708



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 197/410 (48%), Gaps = 60/410 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           +Q G +G++ EA K+F  M+  + V+  SMI+ F +N  +  A  LF  MP  QRNIV+ 
Sbjct: 23  TQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMP--QRNIVSW 80

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++MI  Y+   RV+EAR++FD++   ++YSWT +I+ Y +  ++ + R LF+ +P K  N
Sbjct: 81  NSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKW-N 139

Query: 122 VVSWTTVVLGCAHN-----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            V    +V G A N            + AK +++SW +M TG  RN   +L  ++F +M 
Sbjct: 140 PVCCNAMVAGYAKNRQFDEARRLFDAMPAK-DLVSWNSMLTGYTRNGEMRLGLQFFEEMA 198

Query: 171 NKDIVAWNAMITAYVDAGNM-------------------------------AQASELFNL 199
            +D+V+WN M+  +V+ G++                               A+A  LF+ 
Sbjct: 199 ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQ 258

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           MP RNV  WNAMI  Y +N     A+ L   M +     N  + T+++     M +   A
Sbjct: 259 MPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEA 314

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
             L  ++ +    + T   + +           ++ AR  F ++  +DVV W  MI  YS
Sbjct: 315 RQLLNQMPYRNVAAQTAMISGYVQ------NKRMDDARQIFNQISIRDVVCWNTMIAGYS 368

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
             G   +   LF +M+K     D +++  +++  +  G ++   K F  M
Sbjct: 369 QCGRMDEALHLFKQMVKK----DIVSWNTMVASYAQVGQMDAAIKIFEEM 414


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 296/508 (58%), Gaps = 32/508 (6%)

Query: 8   GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G ++EA +LFD + ++ + V+  +M+  ++R++ +  AE LF  MP   +N+V+ + MID
Sbjct: 97  GMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMP--NKNVVSWNTMID 154

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + GR+D A  +F+++ E NV SW +++S   +  +++E RRLFDRMP +  +V+SWT
Sbjct: 155 GYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPER--DVISWT 212

Query: 127 TVVLGCAHNGLI--AKL--------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G + NG I  A+L         V+SW  M TG  +N     A + F +MP +D+ +
Sbjct: 213 AMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPS 272

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR- 235
           WN MIT  +  G++ +A +LFN MP++NV +W  MI    + G    A+K+ + M  +  
Sbjct: 273 WNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNG 332

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PN+ T  S+L +C    G+ E    H +  +  ++  T +       Y         +
Sbjct: 333 AKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG-----E 387

Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           + +AR  F+      +D+VSW  +I AY++HG+G +    F  M KSG KPD++T+VG+L
Sbjct: 388 LGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLL 447

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM--PPH 408
           S CSHAGLVE+G K F+ + +      R +HY+CL D+  RAG++KEA   + ++   P 
Sbjct: 448 SACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPS 507

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
            R   V GALL  C +H +V++     ++L+E++P ++G Y+L +N++A+ G+W E A+V
Sbjct: 508 AR---VWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARV 564

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           R KM ++ +KK    S IEV  + H  +
Sbjct: 565 RLKMKDKGLKKQPGCSWIEVGNRVHVFV 592



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 197/384 (51%), Gaps = 29/384 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   + MI    K GR+ EAR++FDE+ E +V +WT++ISGY K   ++E RRLFDR+ 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYF 166
            K KNVV+WT +V G   +  I+  E          V+SW TM  G  +N     A   F
Sbjct: 111 AK-KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF 169

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +MP +++V+WN +++     G + +A  LF+ MP+R+V +W AMI   ++NG    A  
Sbjct: 170 EKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARL 229

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALAIRLGFEQ--ETSLTYKCTCHYV 283
           L + M +     N  +  +++T   G  +N+ L  AL +   FE+  E  L    T    
Sbjct: 230 LFDRMPER----NVVSWNAMIT---GYAQNLRLDEALDL---FERMPERDLPSWNTMITG 279

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPD 342
               G   D+  AR  F  +  K+V+SWT MI      G   +  ++F+RML + G KP+
Sbjct: 280 LIQNG---DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPN 336

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           + TFV VL  CS+   + +G++   ++S+   ++      S L ++  + G++  A ++ 
Sbjct: 337 QGTFVSVLGACSNLAGLGEGQQVHQIISKTV-YQDSTFVVSALINMYSKCGELGTARKMF 395

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
                 +RD V    ++ A   HG
Sbjct: 396 DDGMTSQRDLVSWNGIIAAYAHHG 419



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 34/222 (15%)

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C+++  +      +  AR  F+ +   DV++WT +I  Y   G   +  RLF R+     
Sbjct: 55  CNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRV---DA 111

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLM----------------------SRAYGFKP 377
           K + +T+  ++     +  +    K FN M                      S  Y F+ 
Sbjct: 112 KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEK 171

Query: 378 RAEH----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
             E     ++ +  +L + G+++EA R+  +MP  ERD +   A++     +G +  A  
Sbjct: 172 MPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP--ERDVISWTAMIAGLSKNGRIDEARL 229

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           + +R+ E    S  A +     +A     DE   + ++M  R
Sbjct: 230 LFDRMPERNVVSWNAMITG---YAQNLRLDEALDLFERMPER 268


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 188/500 (37%), Positives = 280/500 (56%), Gaps = 24/500 (4%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G + EA ++FD M   + VS  SM+  ++RN D+ +AE LF  MP   +N+V+ + M+ 
Sbjct: 99  NGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP--HKNVVSWTVMLG 156

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G ++ GRVD+ARK+FD + E +V + T++I GY +  ++DE R LFD MP +  NVV+WT
Sbjct: 157 GLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR--NVVTWT 214

Query: 127 TVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +V G A NG          ++ +   +SWT M  G   +   + A   F  MP K +V 
Sbjct: 215 AMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVV 274

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N MI  +   G + +A  +F  M +R+  TW+AMI  Y R G E  A+ L   M +   
Sbjct: 275 CNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGL 334

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             N  +  S+L+ C  +         HA  +R  F+Q+  +       YV        ++
Sbjct: 335 ALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCG-----NL 389

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A+  F R   KDVV W +MI  YS HG G +   +F  M  SG  PD++TF+GVLS C
Sbjct: 390 VRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSAC 449

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S++G V++G + F  M   Y  +P  EHY+CL D+L RA QV EAM++V KM P E D +
Sbjct: 450 SYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKM-PMEPDAI 508

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           V GALLGACR H  + +A+   E+L +L+P ++G YVL +N++A +G W +   +R+K++
Sbjct: 509 VWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIK 568

Query: 474 -RRVKKVASFSQIEVKGKDH 492
            R V K+   S IEV+ K H
Sbjct: 569 ARSVTKLPGCSWIEVEKKVH 588



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 201/412 (48%), Gaps = 29/412 (7%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           S +  I  + RN  L  A  +F   P   R + + +AM+  Y +A +  EA  +F+++ +
Sbjct: 24  SSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQ 83

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE---- 142
            N  SW  LISG+ K   + E RR+FD MP   +NVVSWT++V G   NG +A+ E    
Sbjct: 84  RNTVSWNGLISGHIKNGMLSEARRVFDTMP--DRNVVSWTSMVRGYVRNGDVAEAERLFW 141

Query: 143 ------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                 V+SWT M  GL +      AR+ F  MP KD+VA   MI  Y + G + +A  L
Sbjct: 142 HMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F+ MP+RNV TW AM+  YARNG    A KL  +M +     NE + T++L         
Sbjct: 202 FDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLG------- 250

Query: 257 MLAHALAIRLGFEQETSLTYK--CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
              H+  +R       ++  K    C+ +   +G   +V+ AR  F+ ++ +D  +W+AM
Sbjct: 251 -YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAM 309

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y   G+  +   LF RM + G   +  + + VLS C     ++ G++    + R+  
Sbjct: 310 IKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSE- 368

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           F       S L  +  + G +  A +V ++ P   +D V+  +++     HG
Sbjct: 369 FDQDLYVASVLITMYVKCGNLVRAKQVFNRFPL--KDVVMWNSMITGYSQHG 418



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 160/328 (48%), Gaps = 31/328 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   GKV  A KLF+ M + + VS  +M+  +  +  + +A +LF AMP   + +V 
Sbjct: 217 VSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMP--VKPVVV 274

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            + MI G+   G VD+AR+VF  + E +  +W+++I  Y +     E   LF RM  +  
Sbjct: 275 CNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE-- 332

Query: 121 NVVSWTTVVLGCAHN--GLIAKLEV-ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
                     G A N   LI+ L V +S  ++  G + +A  +L R  F    ++D+   
Sbjct: 333 ----------GLALNFPSLISVLSVCVSLASLDHGKQVHA--QLVRSEF----DQDLYVA 376

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           + +IT YV  GN+ +A ++FN  P ++V  WN+MI  Y+++G    A+ + + M  S   
Sbjct: 377 SVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVP 436

Query: 238 PNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVN 294
           P++ T   +L++C   G ++  L     ++  ++ E  +  Y C    +    G    VN
Sbjct: 437 PDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLL----GRADQVN 492

Query: 295 SARLAFERLEAK-DVVSWTAMILAYSNH 321
            A    E++  + D + W A++ A   H
Sbjct: 493 EAMKLVEKMPMEPDAIVWGALLGACRTH 520


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 287/527 (54%), Gaps = 55/527 (10%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           +EA  LFD+M + + VS   +I+ +++N  + +A   F  MPE  RN+V+ +AM+ GYV+
Sbjct: 64  REARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPE--RNVVSWTAMVRGYVQ 121

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G V EA  +F ++ E NV SWT ++ G  + R++DE R LFD MP+K  +VV+ T ++ 
Sbjct: 122 EGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVK--DVVARTNMIS 179

Query: 131 GCAHNGLIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           G    G +A          +  VISWTTM +G  +N    +AR+ F  MP K+ V+W AM
Sbjct: 180 GYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAM 239

Query: 181 ITAYVDAGNMAQASELFNLMP-------------------------------QRNVWTWN 209
           +  Y   G + +ASELF+ MP                               +++  TW+
Sbjct: 240 LMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWS 299

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRL 266
           AMI  Y R G E  A+ L  LM +     N  +  S+L+ C  +         HA  ++ 
Sbjct: 300 AMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS 359

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
            F+ +  +       YV        D+  AR  F+R   KD+V W ++I  Y+ HG   +
Sbjct: 360 QFDSDVFVASVLITMYVKCG-----DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEE 414

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             ++F  M  SG   D +TFVGVLS CS+ G V++G + F  M   Y  +P+ EHY+C+ 
Sbjct: 415 ALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMV 474

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG V +AM ++ KMP  E D ++ GALLGACR H ++ +A+   ++L++L+P ++
Sbjct: 475 DLLGRAGLVNDAMDLIQKMPV-EADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNA 533

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
           G Y+L +N++A++G W + A++R+ M  ++V K    S IEV+ + H
Sbjct: 534 GPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 201/414 (48%), Gaps = 31/414 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S I  + R   +  A  +F  MP+  + IV+ ++M+ GY +  R  EAR +FD++ E N 
Sbjct: 21  SQIARYARIGQIESARRVFDEMPD--KGIVSWNSMVAGYFQNNRPREARYLFDKMPERNT 78

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE------- 142
            SW  LISGY K R V E R+ FD MP   +NVVSWT +V G    GL+++ E       
Sbjct: 79  VSWNGLISGYVKNRMVSEARKAFDTMP--ERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 143 ---VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
              V+SWT M  GL +      AR  F  MP KD+VA   MI+ Y   G +A+A ELF+ 
Sbjct: 137 EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDE 196

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           MP+RNV +W  MI  Y +NG    A KL  +M +     NE + T++L            
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMG--------YT 244

Query: 260 HALAIRLGFEQETSLTYKCT--CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
               I    E   ++  K    C+ +   +G   +V  AR  F+++  KD  +W+AMI  
Sbjct: 245 QGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y   G   +   LFA M + G + +  + + VLS C+    ++ GR+    + ++  F  
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ-FDS 363

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
                S L  +  + G + +A ++  +  P  +D V+  +++     HG V  A
Sbjct: 364 DVFVASVLITMYVKCGDLVKARQIFDRFSP--KDIVMWNSIITGYAQHGLVEEA 415



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 140/265 (52%), Gaps = 30/265 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA +LFDEM + + +S  +MI+ +++N  +  A  LF  MPE  +N V+ +AM+ G
Sbjct: 185 GRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPE--KNEVSWTAMLMG 242

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + GR++EA ++FD +    V +  ++I G+ +  +V + R++FD+  ++ K+  +W+ 
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQ--IREKDDGTWSA 300

Query: 128 VVLGCAHNG-------LIAKLE----------VISWTTMCTGLE-----RNAMTKLAREY 165
           ++      G       L A ++          +IS  ++C  L      R    +L +  
Sbjct: 301 MIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ 360

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F    + D+   + +IT YV  G++ +A ++F+    +++  WN++I  YA++G    A+
Sbjct: 361 F----DSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEAL 416

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
           ++ + M  S    +  T   +L++C
Sbjct: 417 QVFHEMCSSGMATDGVTFVGVLSAC 441



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 115/280 (41%), Gaps = 53/280 (18%)

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           I++ +      R    + AR  F +MP+K IV+WN+M+  Y       +A  LF+ MP+R
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           N  +WN +I  Y +N     A K  + M +                      N+++    
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPE---------------------RNVVSWTAM 115

Query: 264 IRLGFEQETSLTYKCTCHYVFW--------DWGFQLD-------VNSARLAFERLEAKDV 308
           +R G+ QE  ++   T   +FW         W   L        ++ AR  F+ +  KDV
Sbjct: 116 VR-GYVQEGLVSEAET---LFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDV 171

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           V+ T MI  Y   G   +   LF  M +       I++  ++S     G V+  RK F +
Sbjct: 172 VARTNMISGYCQEGRLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEV 227

Query: 369 MSRAYGFKPRAEHYSCLADIL--RRAGQVKEAMRVVSKMP 406
           M       P     S  A ++   + G+++EA  +   MP
Sbjct: 228 M-------PEKNEVSWTAMLMGYTQGGRIEEASELFDAMP 260



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 32/257 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           FG  G+V +A ++FD++ + D  + ++MI V+ R     +A  LF  M     Q N  + 
Sbjct: 274 FGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSL 333

Query: 62  SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            +++        +D  R+V  E+    ++ +V+  + LI+ Y K   + + R++FDR   
Sbjct: 334 ISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDR--F 391

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------------KLAR 163
             K++V W +++ G A +GL+ +   +      +G+  + +T              K   
Sbjct: 392 SPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGL 451

Query: 164 EYFVQMPNKDIVA-----WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI----D 213
           E F  M +K +V      +  M+     AG +  A +L   MP + +   W A++     
Sbjct: 452 EIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRT 511

Query: 214 RYARNGPEGAAMKLLNL 230
               N  E AA KLL L
Sbjct: 512 HMNMNLAEVAAKKLLQL 528


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 290/529 (54%), Gaps = 43/529 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A   FD   + D VS   M+  ++RN  + +A  LF +   ++ ++++ +A++ G
Sbjct: 20  GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS--RTEWDVISWNALMSG 77

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G++ EAR++FD +   +V SW  ++SGY +   + E RRLFD  P++  +V +WT 
Sbjct: 78  YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--DVFTWTA 135

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           VV G A NG++ +             +SW  M     +  M   A+E F  MP +++ +W
Sbjct: 136 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 195

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N M+T Y  AG + +A  +F+ MPQ++  +W AM+  Y++ G     ++L   M +    
Sbjct: 196 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 255

Query: 238 PNETTCTSILTSCEGM--LE-NMLAHALAIRLGF-------EQETSLTYKCTCHYVFWDW 287
            N +    +L++C  +  LE  M  H   IR G+           ++ +KC         
Sbjct: 256 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG-------- 307

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++  AR AFE +E +DVVSW  MI  Y+ HG G +   +F  M  + TKPD+IT V
Sbjct: 308 ----NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 363

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL+ CSH+GLVEKG   F  M   +G   + EHY+C+ D+L RAG++ EA  ++  M P
Sbjct: 364 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM-P 422

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E D  + GALLGA R+H +  +     E++ EL+P ++G YVL +N++A+ G+W +  +
Sbjct: 423 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 482

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           +R  ME R VKKV  FS IEV+ K HT  A     P +E  Y  L+++D
Sbjct: 483 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLD 531



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 24/288 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G + EA +LFD     D  +  ++++ + +N  L +A  +F AMPE  RN V+
Sbjct: 106 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE--RNAVS 163

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+  Y++   +DEA+++F+ +   NV SW ++++GY +A  ++E + +FD MP   K
Sbjct: 164 WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP--QK 221

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTG-LERNAMTKL--------AREYFVQMP 170
           + VSW  ++   +  G   + L++      C   + R+A   +        A E  +Q+ 
Sbjct: 222 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 281

Query: 171 NKDIVA--------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + I A         NA++  Y   GNM  A   F  M +R+V +WN MI  YAR+G   
Sbjct: 282 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 341

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGF 268
            A+++ ++M  +   P++ T   +L +C   G++E  +++  ++   F
Sbjct: 342 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 389



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 65/342 (19%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA------------------ 183
           + +++  M +    + +  LAR YF   P KD V+WN M+ A                  
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 184 -------------YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                        YV  G M++A ELF+ MP R+V +WN M+  YAR G    A +L   
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL--- 121

Query: 231 MFQSRFMPNETTCTSILT--SCEGMLE-----------------NMLAHALAIRLGFEQE 271
            F +  + +  T T++++  +  GMLE                 N +  A   R   ++ 
Sbjct: 122 -FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 180

Query: 272 TSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             L     C  V   W   L        +  A+  F+ +  KD VSW AM+ AYS  G  
Sbjct: 181 KELFNMMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 239

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  +LF  M + G   +   F  VLS C+    +E G +    + RA G+       + 
Sbjct: 240 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 298

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L  +  + G +++A     +M   ERD V    ++     HG
Sbjct: 299 LLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 338



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 45/201 (22%)

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP +D V +N MI+++ + G ++ A   F+L P+++  +WN M+  Y RNG    A  L 
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL- 59

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
              F SR   +  +  ++++                  G+ Q                WG
Sbjct: 60  ---FNSRTEWDVISWNALMS------------------GYVQ----------------WG 82

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               ++ AR  F+R+  +DVVSW  M+  Y+  G   +  RLF     +    D  T+  
Sbjct: 83  ---KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTA 135

Query: 349 VLSDCSHAGLVEKGRKTFNLM 369
           V+S  +  G++E+ R+ F+ M
Sbjct: 136 VVSGYAQNGMLEEARRVFDAM 156


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  317 bits (812), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 290/529 (54%), Gaps = 43/529 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A   FD   + D VS   M+  ++RN  + +A  LF +   ++ ++++ +A++ G
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS--RTEWDVISWNALMSG 202

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G++ EAR++FD +   +V SW  ++SGY +   + E RRLFD  P++  +V +WT 
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--DVFTWTA 260

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           VV G A NG++ +             +SW  M     +  M   A+E F  MP +++ +W
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N M+T Y  AG + +A  +F+ MPQ++  +W AM+  Y++ G     ++L   M +    
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 238 PNETTCTSILTSCEGM--LE-NMLAHALAIRLGF-------EQETSLTYKCTCHYVFWDW 287
            N +    +L++C  +  LE  M  H   IR G+           ++ +KC         
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG-------- 432

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++  AR AFE +E +DVVSW  MI  Y+ HG G +   +F  M  + TKPD+IT V
Sbjct: 433 ----NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL+ CSH+GLVEKG   F  M   +G   + EHY+C+ D+L RAG++ EA  ++  M P
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM-P 547

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E D  + GALLGA R+H +  +     E++ EL+P ++G YVL +N++A+ G+W +  +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           +R  ME R VKKV  FS IEV+ K HT  A     P +E  Y  L+++D
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLD 656



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 192/462 (41%), Gaps = 90/462 (19%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +P+ +     IT  +R   +  AE LF AMP  +R+    +AM+ GY   GR+  A  +F
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
             I   + YS+ +L+     +  + + R LFD MP++  + V++  ++   A++GL++  
Sbjct: 93  RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVS-- 148

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA------------------ 183
                              LAR YF   P KD V+WN M+ A                  
Sbjct: 149 -------------------LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 184 -------------YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                        YV  G M++A ELF+ MP R+V +WN M+  YAR G    A +L   
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL--- 246

Query: 231 MFQSRFMPNETTCTSILT--SCEGMLE-----------------NMLAHALAIRLGFEQE 271
            F +  + +  T T++++  +  GMLE                 N +  A   R   ++ 
Sbjct: 247 -FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 305

Query: 272 TSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             L     C  V   W   L        +  A+  F+ +  KD VSW AM+ AYS  G  
Sbjct: 306 KELFNMMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  +LF  M + G   +   F  VLS C+    +E G +    + RA G+       + 
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L  +  + G +++A     +M   ERD V    ++     HG
Sbjct: 424 LLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 24/288 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G + EA +LFD     D  +  ++++ + +N  L +A  +F AMPE  RN V+
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE--RNAVS 288

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+  Y++   +DEA+++F+ +   NV SW ++++GY +A  ++E + +FD MP   K
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP--QK 346

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTG-LERNAMTKL--------AREYFVQMP 170
           + VSW  ++   +  G   + L++      C   + R+A   +        A E  +Q+ 
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 406

Query: 171 NKDIVA--------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + I A         NA++  Y   GNM  A   F  M +R+V +WN MI  YAR+G   
Sbjct: 407 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGF 268
            A+++ ++M  +   P++ T   +L +C   G++E  +++  ++   F
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 290/529 (54%), Gaps = 43/529 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A   FD   + D VS   M+  ++RN  + +A  LF +   ++ ++++ +A++ G
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS--RTEWDVISWNALMSG 202

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G++ EAR++FD +   +V SW  ++SGY +   + E RRLFD  P++  +V +WT 
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--DVFTWTA 260

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           VV G A NG++ +             +SW  M     +  M   A+E F  MP +++ +W
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N M+T Y  AG + +A  +F+ MPQ++  +W AM+  Y++ G     ++L   M +    
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 238 PNETTCTSILTSCEGM--LE-NMLAHALAIRLGF-------EQETSLTYKCTCHYVFWDW 287
            N +    +L++C  +  LE  M  H   IR G+           ++ +KC         
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG-------- 432

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++  AR AFE +E +DVVSW  MI  Y+ HG G +   +F  M  + TKPD+IT V
Sbjct: 433 ----NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL+ CSH+GLVEKG   F  M   +G   + EHY+C+ D+L RAG++ EA  ++  M P
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM-P 547

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E D  + GALLGA R+H +  +     E++ EL+P ++G YVL +N++A+ G+W +  +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           +R  ME R VKKV  FS IEV+ K HT  A     P +E  Y  L+++D
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLD 656



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 192/462 (41%), Gaps = 90/462 (19%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +P+ +     IT  +R   +  AE LF AMP  +R+    +AM+ GY   GR+  A  +F
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
             I   + YS+ +L+     +  + + R LFD MP++  + V++  ++   A++GL++  
Sbjct: 93  RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVS-- 148

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA------------------ 183
                              LAR YF   P KD V+WN M+ A                  
Sbjct: 149 -------------------LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 184 -------------YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                        YV  G M++A ELF+ MP R+V +WN M+  YAR G    A +L   
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL--- 246

Query: 231 MFQSRFMPNETTCTSILT--SCEGMLE-----------------NMLAHALAIRLGFEQE 271
            F +  + +  T T++++  +  GMLE                 N +  A   R   ++ 
Sbjct: 247 -FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 305

Query: 272 TSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             L     C  V   W   L        +  A+  F+ +  KD VSW AM+ AYS  G  
Sbjct: 306 KELFNMMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  +LF  M + G   +   F  VLS C+    +E G +    + RA G+       + 
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L  +  + G +++A     +M   ERD V    ++     HG
Sbjct: 424 LLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 24/288 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G + EA +LFD     D  +  ++++ + +N  L +A  +F AMPE  RN V+
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE--RNAVS 288

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+  Y++   +DEA+++F+ +   NV SW ++++GY +A  ++E + +FD MP   K
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP--QK 346

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTG-LERNAMTKL--------AREYFVQMP 170
           + VSW  ++   +  G   + L++      C   + R+A   +        A E  +Q+ 
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 406

Query: 171 NKDIVA--------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + I A         NA++  Y   GNM  A   F  M +R+V +WN MI  YAR+G   
Sbjct: 407 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGF 268
            A+++ ++M  +   P++ T   +L +C   G++E  +++  ++   F
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 280/495 (56%), Gaps = 34/495 (6%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
           M   D VS  S+IT + +N    +++ LF  MP   +N+V+ ++MI G ++  R+DEA +
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMP--TKNVVSWNSMIAGCIEDERIDEAWQ 58

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA 139
            F  + + N  SW ++ISG  +  +V+E  RLF+ MP +  NV+S+T +V G A  G I 
Sbjct: 59  YFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR--NVISYTAMVDGYAKIGEIE 116

Query: 140 KL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
           +            V+SWT M +G   N     A   F QMP+K+IVA  AMIT Y   G 
Sbjct: 117 QARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 176

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
             +A  LF+ +P R++ +WNAMI  YA+NG    A+KL + M +    P+ +T  S+LT+
Sbjct: 177 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 236

Query: 250 CEGML---ENMLAHALAIRLGFEQETSL-----TYKCTCHYVFWDWGFQLDVNSARLAFE 301
           C  +    E    H L ++ G+E   S+     T  C C       G  LD   + LAF 
Sbjct: 237 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC-------GSILD---SELAFR 286

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           +++  DVVSW AMI A++ HG   +    F  M  +  +PD ITF+ +LS C HAG V +
Sbjct: 287 QIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHE 346

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
               FN M  +Y   PR EH++CL DIL R GQV++A +++ +M P E D  + GALL A
Sbjct: 347 SLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM-PFEADCGIWGALLAA 405

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVA 480
           C +H +V++ +   ++++EL+P +SGAYV+ +N++AA G W E  +VR  M E+ VKK  
Sbjct: 406 CHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQP 465

Query: 481 SFSQIEVKGKDHTLL 495
           ++S +E+  K H  L
Sbjct: 466 AYSWMEIDNKVHFFL 480



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 143/263 (54%), Gaps = 28/263 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +V+EA++LF+EM + + +S  +M+  + +  ++ +A ALF  MP  Q+N+V+ + MI GY
Sbjct: 83  RVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMP--QKNVVSWTVMISGY 140

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           V+ G+ DEA  +F+++ + N+ + T++I+GY K  + D+ + LFD++P   +++ SW  +
Sbjct: 141 VENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIP--CRDLASWNAM 198

Query: 129 VLGCAHNG-------LIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           + G A NG       L +++           +IS  T C+ L   A  +  R+  V +  
Sbjct: 199 ITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL---ASLQEGRKTHVLVLK 255

Query: 172 KD----IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
                 I   NA+IT Y   G++  +   F  +   +V +WNAMI  +AR+G    A+  
Sbjct: 256 SGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALAS 315

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
              M  +R  P+  T  S+L++C
Sbjct: 316 FGEMRSNRVEPDGITFLSLLSAC 338


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 290/527 (55%), Gaps = 57/527 (10%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA 71
           EA KLFD+M + + +S   +++ +++N  + +A  +F  MPE  RN+V+ ++M+ GYV+ 
Sbjct: 65  EAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPE--RNVVSWTSMVRGYVQE 122

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG 131
           G +DEA  +F  + E NV SWT ++ G  +  +VDE RRLFD +P+K  +VV+ T ++ G
Sbjct: 123 GLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK--DVVASTNMIGG 180

Query: 132 CAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
               G +++            V++WT+M +G   N    +AR+ F  MP+K+ V W AM+
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAML 240

Query: 182 TAYVDAGNMAQASELFNLMPQRNV--------------------W-----------TWNA 210
             Y  +G + +A+ELF  MP + V                    W           TW+A
Sbjct: 241 KGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSA 300

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRL 266
           +I  Y R G E  A+ L +LM +    PN  +  SIL+ C G L ++      H+  +R 
Sbjct: 301 LIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVC-GSLASLDHGRQVHSQLVRS 359

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
            F+ +  ++      Y+        D+ + +  F+R  +KD+V W ++I  Y+ HG G +
Sbjct: 360 HFDLDIYVSSVLITMYIKCG-----DLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEK 414

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  M  SG  PDEITF+GVLS C + G V++G + F  M   Y    + EHY+C+ 
Sbjct: 415 ALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMV 474

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG++ EAM ++  MP  E D +V GALL ACR H ++ +A+   ++L++L+PSS+
Sbjct: 475 DLLGRAGKLNEAMNLIENMPV-EADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSA 533

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
           G Y+L +N++A++  W + A++RK M  R V K    S IEV  K H
Sbjct: 534 GPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVH 580



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 202/454 (44%), Gaps = 82/454 (18%)

Query: 48  FRAMPESQRNIVAESA-----MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           FR +P   R+  + SA      I  + + G++D AR +FD++    V SW ++++GYF  
Sbjct: 3   FRLIP--YRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHN 60

Query: 103 RQVDEGRRLFDRMP-----------------------------LKLKNVVSWTTVVLGCA 133
           ++  E ++LFD+MP                             +  +NVVSWT++V G  
Sbjct: 61  KRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYV 120

Query: 134 HNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
             GLI + E          V+SWT M  GL  +     AR  F  +P KD+VA   MI  
Sbjct: 121 QEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGG 180

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
               G +++A E+F+ MPQRNV  W +MI  YA N     A KL  +M       NE T 
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTW 236

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYK-------CTCHYVFWDWGFQLDVNSA 296
           T++L                 R G   E +  +K         C+ +   +G   +V  A
Sbjct: 237 TAMLKG-------------YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKA 283

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F++++ KD  +W+A+I  Y   G   +   LF+ M + G +P+  + + +LS C   
Sbjct: 284 RWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSL 343

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             ++ GR+  + + R++ F       S L  +  + G +    RV  +     +D V+  
Sbjct: 344 ASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFS--SKDIVMWN 400

Query: 417 ALLGACRLHGDVRMADYIGERLIEL--QPSSSGA 448
           +++     HG        GE+ +E+  +  SSGA
Sbjct: 401 SIIAGYAQHG-------FGEKALEVFHEMFSSGA 427



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 31/327 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +    KV  A KLF+ M   + V+  +M+  + R+  + +A  LF+AMP   + + A 
Sbjct: 210 SGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMP--VKPVAAC 267

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + MI G+   G V +AR VFD++ E +  +W++LI  Y +     E   LF  M  +   
Sbjct: 268 NGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVR 327

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  S  +++  C   G +A L+            R   ++L R +F    + DI   + 
Sbjct: 328 PNFPSIISILSVC---GSLASLD----------HGRQVHSQLVRSHF----DLDIYVSSV 370

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +IT Y+  G++     +F+    +++  WN++I  YA++G    A+++ + MF S   P+
Sbjct: 371 LITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPD 430

Query: 240 ETTCTSILTSC--EGMLENMLA--HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           E T   +L++C   G ++  L    ++  +   +Q+T   Y C    +    G    +N 
Sbjct: 431 EITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTE-HYACMVDLL----GRAGKLNE 485

Query: 296 ARLAFERLEAK-DVVSWTAMILAYSNH 321
           A    E +  + D + W A++ A   H
Sbjct: 486 AMNLIENMPVEADAIVWGALLSACRTH 512



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ AR  F+ L++K V SW A++  Y ++    +  +LF +M +  T    I++ G++S 
Sbjct: 32  IDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNT----ISWNGLVSG 87

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD- 411
               G++ + RK F+ M      +     ++ +     + G + EA  +  +MP  E++ 
Sbjct: 88  YVKNGMISEARKVFDKMP-----ERNVVSWTSMVRGYVQEGLIDEAELLFWRMP--EKNV 140

Query: 412 ---HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
               V+LG L+   R+    R+ D I  + +    +  G       +  AR  +DE  Q
Sbjct: 141 VSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQ 199


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 301/592 (50%), Gaps = 105/592 (17%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
             K   A  LFD+M   D  S   M+T + RN  L  A  LF +MPE  +++V+ +AM+ 
Sbjct: 77  NAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPE--KDVVSWNAMLS 134

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-------------- 112
           GYV++G VDEAR VFD +   N  SW  L++ Y ++ +++E RRLF              
Sbjct: 135 GYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCL 194

Query: 113 -----------------DRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
                            D++P++  +++SW T++ G A +G +++           +V +
Sbjct: 195 MGGYVKRNMLGDARQLFDQIPVR--DLISWNTMISGYAQDGDLSQARRLFEESPVRDVFT 252

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNK-------------------------------DI 174
           WT M     ++ M   AR  F +MP K                               +I
Sbjct: 253 WTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNI 312

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
            +WN MI+ Y   G++AQA  LF++MPQR+  +W A+I  YA+NG    AM +L  M + 
Sbjct: 313 GSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRD 372

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVF 284
               N +T    L++C  +    L    H   +R G+E+          +  KC C    
Sbjct: 373 GESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGC---- 428

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   ++ A   F+ ++ KD+VSW  M+  Y+ HG G Q   +F  M+ +G KPDEI
Sbjct: 429 --------IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEI 480

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T VGVLS CSH GL ++G + F+ M++ YG  P ++HY+C+ D+L RAG ++EA  ++  
Sbjct: 481 TMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRN 540

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M P E D    GALLGA R+HG++ + +   E + +++P +SG YVL +N++AA G W +
Sbjct: 541 M-PFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVD 599

Query: 465 FAQVRKKMER-RVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
            +++R KM +  V+K   +S +EV+ K HT        P +   Y  L+E+D
Sbjct: 600 VSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELD 651



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 205/445 (46%), Gaps = 31/445 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G    A  +FD M   + VS  +MI+ +LRN     A  LF  MP   +++ + + M+ 
Sbjct: 46  NGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP--HKDLFSWNLMLT 103

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +  R+ +AR +FD + E +V SW +++SGY ++  VDE R +FDRMP   KN +SW 
Sbjct: 104 GYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP--HKNSISWN 161

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++     +G +          +  E+IS   +  G  +  M   AR+ F Q+P +D+++
Sbjct: 162 GLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLIS 221

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI+ Y   G+++QA  LF   P R+V+TW AM+  Y ++G    A ++ + M Q R 
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKRE 281

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF--QLDVN 294
           M                     A    + +G E    + +     +     G+    D+ 
Sbjct: 282 MSYNVMIAG------------YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLA 329

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F+ +  +D VSW A+I  Y+ +G   +   +   M + G   +  TF   LS C+
Sbjct: 330 QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACA 389

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               +E G++    + R  G++      + L  +  + G + EA  V   +    +D V 
Sbjct: 390 DIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV--QHKDIVS 446

Query: 415 LGALLGACRLHGDVRMADYIGERLI 439
              +L     HG  R A  + E +I
Sbjct: 447 WNTMLAGYARHGFGRQALTVFESMI 471



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 165/357 (46%), Gaps = 44/357 (12%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I  +++ G  D A  VFD +   N  S+ ++ISGY +  +    R LFD+MP K      
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK------ 93

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
                            ++ SW  M TG  RN   + AR  F  MP KD+V+WNAM++ Y
Sbjct: 94  -----------------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGY 136

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           V +G++ +A ++F+ MP +N  +WN ++  Y R+G    A +L    F+S+      +C 
Sbjct: 137 VRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRL----FESKSDWELISCN 192

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            ++     +  NML  A   R  F+Q   +    + + +   +    D++ AR  FE   
Sbjct: 193 CLMGGY--VKRNMLGDA---RQLFDQ-IPVRDLISWNTMISGYAQDGDLSQARRLFEESP 246

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +DV +WTAM+ AY   G   +  R+F  M     +  E+++  +++  +    ++ GR+
Sbjct: 247 VRDVFTWTAMVYAYVQDGMLDEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRE 302

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            F  M       P    ++ +     + G + +A  +   MP  +RD V   A++  
Sbjct: 303 LFEEMPF-----PNIGSWNIMISGYCQNGDLAQARNLFDMMP--QRDSVSWAAIIAG 352



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 134/267 (50%), Gaps = 22/267 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + +A +LF+E    D  +  +M+  ++++  L +A  +F  MP  Q+  ++ 
Sbjct: 227 SGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP--QKREMSY 284

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + MI GY +  R+D  R++F+E+   N+ SW  +ISGY +   + + R LFD MP   ++
Sbjct: 285 NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMP--QRD 342

Query: 122 VVSWTTVVLGCAHNGLIAKL-----------EVISWTTMCTGLERN---AMTKLAREYFV 167
            VSW  ++ G A NGL  +            E ++ +T C  L      A  +L ++   
Sbjct: 343 SVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHG 402

Query: 168 QMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Q+      K  +  NA++  Y   G + +A ++F  +  +++ +WN M+  YAR+G    
Sbjct: 403 QVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQ 462

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+ +   M  +   P+E T   +L++C
Sbjct: 463 ALTVFESMITAGVKPDEITMVGVLSAC 489


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 289/529 (54%), Gaps = 43/529 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A   FD   + D VS   M+  ++RN  + +A  LF +   ++ + ++ +A++ G
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS--RTEWDAISWNALMSG 202

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G++ EAR++FD +   +V SW  ++SGY +   + E RRLFD  P++  +V +WT 
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--DVFTWTA 260

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           VV G A NG++ +             +SW  M     +  M   A+E F  MP +++ +W
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N M+T Y  AG + +A  +F+ MPQ++  +W AM+  Y++ G     ++L   M +    
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 238 PNETTCTSILTSCEGM--LE-NMLAHALAIRLGF-------EQETSLTYKCTCHYVFWDW 287
            N +    +L++C  +  LE  M  H   IR G+           ++ +KC         
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG-------- 432

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++  AR AFE +E +DVVSW  MI  Y+ HG G +   +F  M  + TKPD+IT V
Sbjct: 433 ----NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL+ CSH+GLVEKG   F  M   +G   + EHY+C+ D+L RAG++ EA  ++  M P
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM-P 547

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E D  + GALLGA R+H +  +     E++ EL+P ++G YVL +N++A+ G+W +  +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           +R  ME R VKKV  FS IEV+ K HT  A     P +E  Y  L+++D
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLD 656



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 194/462 (41%), Gaps = 90/462 (19%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +P+ +     IT  +R   +  AE LF AMP  +R+    +AM+ GY   GR+  A  +F
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMP--RRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
             I   + YS+ +L+     +  + + R LFD MP++  + V++  ++   A++GL++  
Sbjct: 93  RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVS-- 148

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV---------------- 185
                              LAR YF   P KD V+WN M+ AYV                
Sbjct: 149 -------------------LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189

Query: 186 --DA-------------GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             DA             G M++A ELF+ MP R+V +WN M+  YAR G    A +L   
Sbjct: 190 EWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL--- 246

Query: 231 MFQSRFMPNETTCTSILT--SCEGMLE-----------------NMLAHALAIRLGFEQE 271
            F +  + +  T T++++  +  GMLE                 N +  A   R   ++ 
Sbjct: 247 -FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 305

Query: 272 TSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             L     C  V   W   L        +  A+  F+ +  KD VSW AM+ AYS  G  
Sbjct: 306 KELFNMMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  +LF  M + G   +   F  VLS C+    +E G +    + RA G+       + 
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L  +  + G +++A     +M   ERD V    ++     HG
Sbjct: 424 LLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 24/288 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G + EA +LFD     D  +  ++++ + +N  L +A  +F AMPE  RN V+
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE--RNAVS 288

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+  Y++   +DEA+++F+ +   NV SW ++++GY +A  ++E + +FD MP   K
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP--QK 346

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTG-LERNAMTKL--------AREYFVQMP 170
           + VSW  ++   +  G   + L++      C   + R+A   +        A E  +Q+ 
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 406

Query: 171 NKDIVA--------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + I A         NA++  Y   GNM  A   F  M +R+V +WN MI  YAR+G   
Sbjct: 407 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 466

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGF 268
            A+++ ++M  +   P++ T   +L +C   G++E  +++  ++   F
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDF 514


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 284/544 (52%), Gaps = 59/544 (10%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            ++    G+V +A +LFD M   D VS  +M+  + R   L +A  LF   P+++RN+V 
Sbjct: 48  VAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR-PDARRNVVT 106

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
            +A++ GY +A RVDEA  +F+ + E NV SW +++  Y    +V++   LF+RMP++  
Sbjct: 107 WTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDA 166

Query: 119 ---------------------------LKNVVSWTTVVLGCAHNGLI----------AKL 141
                                      +++V+SWTT++ G A NG +           + 
Sbjct: 167 GSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPER 226

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
            V+SW  M +G  RN   + A + F +MP +D+ +WN MIT ++   ++  A +LF+ MP
Sbjct: 227 NVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMP 286

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-------CTSILTSCEGM- 253
           +RNV TW  M++ Y +      A+KL N M      PN+ T       C+++   CEG  
Sbjct: 287 KRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQ 346

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
           +  M+    +    F + T +     C           ++  AR  F+    KD++SW  
Sbjct: 347 VHQMICKTPSQFDTFVESTLMNLYAKCG----------EIRLARNVFDFSMEKDLISWNG 396

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I AY++HG G +   L+  M ++G KP++ T+VG+LS CSHAGLV++G K F  M +  
Sbjct: 397 IIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDN 456

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
               R EHY+CL D+  RAG++++A R++S          V  ALLG C  HG+  + D 
Sbjct: 457 SIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDL 516

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
             + L+E +P ++G Y L  N++A+ G+W E A++R +M  R +KK    S IEV  K H
Sbjct: 517 AAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVH 576

Query: 493 TLLA 496
             ++
Sbjct: 577 VFVS 580


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 278/511 (54%), Gaps = 27/511 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLR--NHDLPKAEALF-RAMPESQRNI 58
           S     G V  A ++FD M+  D VS  +++T   R   H LP A  LF  AMP   R++
Sbjct: 23  SALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMP--SRDV 80

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V+ +++I G +  G +D A   F    E NV +W ++++G  +  +V + +RLFD MP +
Sbjct: 81  VSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMPER 140

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQ 168
             NVVS+TT+V   A  G + +            ++SW  M +G   N M   ARE F  
Sbjct: 141 --NVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARELFEA 198

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K++VA  AMIT +   G++  A  LF+ +  ++V +WNAMI  Y  NG    AM+L 
Sbjct: 199 MPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLH 258

Query: 229 NLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            LMF+    P+  T  ++LT+C  +    +    HA+AI+   E   S +      Y   
Sbjct: 259 ALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKC 318

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 +V  + L F  L  KD+VSW  +I AY+ HG   +V  LF  M  +G  PD+IT
Sbjct: 319 G-----NVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDIT 373

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+ VLS C H G+V+   K F+LMS  Y   PRAEHY+C+ DIL RAGQ+++A   +  M
Sbjct: 374 FLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHM 433

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P     + V G+LLGAC++HG+V++ +   + L++    SSG YV+ +N++AA G W + 
Sbjct: 434 PLKAEKN-VWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQV 492

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            Q+R +M ER VKK   +S  E+  + H  +
Sbjct: 493 NQIRGQMKERGVKKQPGYSWTEIGNEVHMFV 523


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/511 (36%), Positives = 276/511 (54%), Gaps = 27/511 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLR--NHDLPKAEALF-RAMPESQRNI 58
           S     G V  A ++FD M   D VS  +++T   R   H LP A  LF  AMP   R++
Sbjct: 23  SALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMP--SRDV 80

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V+ +++I G +  G +D A   F    + NV +W ++++G  +  + D+  RLF  MP +
Sbjct: 81  VSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKR 140

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQ 168
             NVVS+TT+V G A  G +A+            ++SW  M +G   N M   A + F  
Sbjct: 141 --NVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEA 198

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K++VA  AMIT+Y   G++  A  LF+ +  ++V +WN MI  Y  NG    AM+L 
Sbjct: 199 MPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLH 258

Query: 229 NLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            +MF+    P+  T  ++LT+C  +    +    HA+AI+   E   S +      Y   
Sbjct: 259 AVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKC 318

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 +V  + L F  L  KD+VSW  +I AY+ HG   +V  LF  M  +G  PD+IT
Sbjct: 319 G-----NVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDIT 373

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+ VLS C H G V+   K F+LMS  Y   PRAEHY+C+ DIL RAGQ+++A   +  M
Sbjct: 374 FLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDM 433

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P  E +  V G+LLGAC++HG+V++ +   + L++    SSG YV+ +N++AA G W + 
Sbjct: 434 PL-EAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQV 492

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            QVR +M ER VKK   +S  E+  + H  +
Sbjct: 493 NQVRGQMKERGVKKQPGYSWTEIANEVHMFV 523



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 43/275 (15%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE--GAAMKLLNLMFQSR 235
           N  I+A   AG++A A  +F+ MP R+V +WNA++    R G     AA +L +    SR
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 236 FMPNETTCTSILTSC--EGMLENMLAH----------------ALAIRLGFEQETSLTY- 276
              +  +  SI+  C   G L+   A+                A  +RLG   +    + 
Sbjct: 79  ---DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFG 135

Query: 277 ----KCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
               +    Y     G   + +V  AR  F+ +  +++VSW AMI  Y  +G   +  +L
Sbjct: 136 EMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKL 195

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADIL 389
           F  M     + + +    +++     G VE  R+ F+      G + +    ++ +    
Sbjct: 196 FEAM----PEKNVVACTAMITSYCKQGDVESARRLFD------GIRAKDVISWNTMIAGY 245

Query: 390 RRAGQVKEAMRVVSKM--PPHERDHVVLGALLGAC 422
              G  +EAMR+ + M     + DH  L A+L AC
Sbjct: 246 VHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTAC 280


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/558 (31%), Positives = 297/558 (53%), Gaps = 58/558 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           ++    G+V +A +LFD     D VS  +M+  + R   L +A AL    P+++RN+V  
Sbjct: 47  AELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLH-RPDARRNVVTW 105

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV---------------- 105
           +A++ GY +A RVDEAR +FD + E NV SW +++  Y  A ++                
Sbjct: 106 TALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAG 165

Query: 106 ---------------DEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----------IAK 140
                          DE RRLF+RMP +  NV+SWTT++ G A +G           + +
Sbjct: 166 SWNILLAALVRSGTMDEARRLFERMPER--NVMSWTTMISGLARSGSADEARALFDGMPE 223

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
             V+SW  M +G  RN     A + F+ MP +D+ +WN MIT ++   ++ +A ELF+ M
Sbjct: 224 RNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEM 283

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENM 257
           P+RNV +W  M++   +      A+++ N M      PN+ T    +   ++  G+ E  
Sbjct: 284 PKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQ 343

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             H +  +  F+ +  +  + +   ++   G   ++  AR  F+    KDV+SW  MI A
Sbjct: 344 QVHQMICKTPFQFDNFI--ESSLMKLYAKCG---EIRLARKVFDLSGEKDVISWNGMIAA 398

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y++HG G +   L+ +M ++  KP+++T+VG+LS CSH+GLV++G + F  M++      
Sbjct: 399 YAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAV 458

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
           R EHYSCL D+  RAG++ +A R+++ +        V  ALLG C  HG+  + D     
Sbjct: 459 RDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARN 518

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L+E +P ++G Y L +N++A+ G+W E A++R +M +R +KK    S IE+  K H  +A
Sbjct: 519 LLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHVFVA 578

Query: 497 PMR-----EMGYVVLKEV 509
             +     E+ Y +L+++
Sbjct: 579 RDKSHSESELIYSLLQDI 596



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 58/253 (22%)

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           VQ PN+ I    A       AG +  A  LF+  P R+V +W AM+  YAR G    A  
Sbjct: 39  VQDPNRRIAELAA-------AGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASA 91

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           LL+     R   N  T T++L+           +A A R                     
Sbjct: 92  LLHRPDARR---NVVTWTALLS----------GYARARR--------------------- 117

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 V+ AR  F+R+  ++VVSW  M+ AY++ G       LF  M       D  ++
Sbjct: 118 ------VDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGM----PVRDAGSW 167

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             +L+    +G +++ R+ F  M      +     ++ +   L R+G   EA  +   MP
Sbjct: 168 NILLAALVRSGTMDEARRLFERMP-----ERNVMSWTTMISGLARSGSADEARALFDGMP 222

Query: 407 PHERDHVVLGALL 419
             ER+ V   A++
Sbjct: 223 --ERNVVSWNAMI 233


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 293/507 (57%), Gaps = 35/507 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA +LFDEM +PD ++  ++I+ +++   + +A  LF  + ++++N+V  +AM+ G
Sbjct: 81  GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRV-DAKKNVVTWTAMVGG 139

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y+++ ++ +A K+F+E+   NV SW ++I GY +  ++D    LF++MP +  NVVSW T
Sbjct: 140 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER--NVVSWNT 197

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           V+   A  G I +           +VISWT M  GL   A+     + F +MP +D+ +W
Sbjct: 198 VMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEAL-----DLFERMPERDLPSW 252

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-F 236
           N MIT  +  G++ +A +LFN MP++NV +W  MI    + G    A+K+ + M  +   
Sbjct: 253 NTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGA 312

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            PN+ T  S+L +C    G+ E    H +  +  ++  T +       Y         ++
Sbjct: 313 KPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG-----EL 367

Query: 294 NSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            +AR  F+      +D+VSW  +I AY++HG+G +    F  M KSG KPD++T+VG+LS
Sbjct: 368 GTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLS 427

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM--PPHE 409
            CSHAGLVE+G K F+ + +      R +HY+CL D+  RAG++KEA   + ++   P  
Sbjct: 428 ACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSA 487

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
           R   V GALL  C +H +V++     ++L+E++P ++G Y+L +N++A+ G+W E A+VR
Sbjct: 488 R---VWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVR 544

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLL 495
            KM ++ +KK    S IEV  + H  +
Sbjct: 545 LKMKDKGLKKQPGCSWIEVGNRVHVFV 571



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 36/371 (9%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           +  ++   RK F    +GNV     +I+   K  ++ E RRLFD M  +  +V++WTTV+
Sbjct: 50  RTAKISIPRKDF--TVDGNVARCNWMITNLSKDGRIMEARRLFDEM--REPDVITWTTVI 105

Query: 130 LGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            G    G+I           AK  V++WT M  G  R+     A + F +MPNK++V+WN
Sbjct: 106 SGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWN 165

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            MI  Y   G +  A  LF  MP+RNV +WN ++   A+ G    A +L + M +   + 
Sbjct: 166 TMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVI- 224

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQ--ETSLTYKCTCHYVFWDWGFQLDVNSA 296
                     S   M+  +L  AL +   FE+  E  L    T        G   D+  A
Sbjct: 225 ----------SWTAMIAGLLDEALDL---FERMPERDLPSWNTMITGLIQNG---DLRRA 268

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSH 355
           R  F  +  K+V+SWT MI      G   +  ++F+RML + G KP++ TFV VL  CS+
Sbjct: 269 RKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
              + +G++   ++S+   ++      S L ++  + G++  A ++       +RD V  
Sbjct: 329 LAGLGEGQQVHQIISKTV-YQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSW 387

Query: 416 GALLGACRLHG 426
             ++ A   HG
Sbjct: 388 NGIIAAYAHHG 398



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C+++  +      +  AR  F+ +   DV++WT +I  Y   G   +  RLF R+     
Sbjct: 70  CNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRV---DA 126

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           K + +T+  ++     +  +    K FN M            ++ + D   + G++  AM
Sbjct: 127 KKNVVTWTAMVGGYIRSNKISDAEKLFNEMP-----NKNVVSWNTMIDGYAQNGRIDSAM 181

Query: 400 RVVSKMPPHERDHV---VLGALLGAC-RLHGDVRMADYIGER 437
            +  KMP  ER+ V    + ++L  C R+    R+ D + ER
Sbjct: 182 YLFEKMP--ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPER 221


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/480 (36%), Positives = 275/480 (57%), Gaps = 24/480 (5%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           MIT + RN +L KA  LF  +P  + N V  +AM+ GY K  + DEAR++FD +   ++ 
Sbjct: 1   MITCYTRNGELAKARNLFNLLP-YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLV 59

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LIAK 140
           SW S+++GY +  ++  G + F+ M    ++VVSW  +V G    G           I  
Sbjct: 60  SWNSMLTGYTRNGEMRLGLQFFEEM--AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN 117

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +SW TM  G  R      AR  F QMP +++VAWNAMI AYV   ++ +A  LF  M
Sbjct: 118 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM 177

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA- 259
           P++N  +W  +I+ Y R G    A +LLN M   R  P+++T    L+SC  +    +  
Sbjct: 178 PEKNSISWTTVINGYVRMGKLDEARQLLNQM-PYRNKPDQSTFACGLSSCAHLAALQVGK 236

Query: 260 --HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             H L ++ G+  +  ++      Y          ++SA L F+ ++  DVVSW ++I A
Sbjct: 237 QLHQLVMKSGYATDLFVSNALITMYAKCG-----SISSAELLFKDIDHFDVVSWNSLIAA 291

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y+ +G+G +  +LF +M   G  PDE+TFVG+LS CSH GL+++G K F  M +AY  +P
Sbjct: 292 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 351

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
            AEHY+C+ D+L RAG+++EA ++V  M  +  +  + GALLGACR+HG++ +A +  E+
Sbjct: 352 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINA-NAGIWGALLGACRIHGNLELAKFAAEK 410

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L+E +P  +  YVL +N+ A  G WDE A+VR+ M E+  +K   +S IE++ + H  L+
Sbjct: 411 LLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLS 470



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 52/290 (17%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +  EA +LFD M   D VS  SM+T + RN ++      F  M E  R++V+ + M+DG+
Sbjct: 42  QFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE--RDVVSWNLMVDGF 99

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           V+ G ++ + + F++I   N  SW +++ G+ +  ++ E RRLFD+MP  ++NVV+W  +
Sbjct: 100 VEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMP--IRNVVAWNAM 157

Query: 129 VLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK------ 172
           +     N  +           +   ISWTT+  G  R      AR+   QMP +      
Sbjct: 158 IAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQS 217

Query: 173 --------------------------------DIVAWNAMITAYVDAGNMAQASELFNLM 200
                                           D+   NA+IT Y   G+++ A  LF  +
Sbjct: 218 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 277

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              +V +WN++I  YA NG    A+KL + M      P+E T   IL++C
Sbjct: 278 DHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSAC 327


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 295/526 (56%), Gaps = 33/526 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G++ EA K+FD M + + VS  +++  ++ N  +  AE+LF  MPE  +N V+ + M+ 
Sbjct: 92  NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE--KNKVSWTVMLI 149

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G+++ GR+D+A K+++ I + +  + TS+I G  K  +VDE R +FD M    ++V++WT
Sbjct: 150 GFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM--SERSVITWT 207

Query: 127 TVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           T+V G   N  +            K EV SWT+M  G  +N   + A E F  MP K ++
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSMLMGYVQNGRIEDAEELFEVMPVKPVI 266

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           A NAMI+     G +A+A  +F+ M +RN  +W  +I  + RNG E  A+ L  LM +  
Sbjct: 267 ACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQG 326

Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P   T  SIL+ C  +         HA  +R  F+ +  +       Y+        +
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG-----E 381

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLS 351
           +  ++L F+R  +KD++ W ++I  Y++HG G +  ++F  M  SG TKP+E+TFV  LS
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLS 441

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CS+AG+VE+G K +  M   +G KP   HY+C+ D+L RAG+  EAM ++  M   E D
Sbjct: 442 ACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPD 500

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V G+LLGACR H  + +A++  ++LIE++P +SG Y+L +N++A++G W + A++RK 
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560

Query: 472 MERR-VKKVASFSQIEVKGKDHTLL------APMREMGYVVLKEVD 510
           M+ R V+K    S  EV+ K H          P +E    +L E+D
Sbjct: 561 MKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 177/400 (44%), Gaps = 60/400 (15%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYF----------------------------- 100
           + G++ EARK+FD     ++ SW S+++GYF                             
Sbjct: 29  RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSG 88

Query: 101 --KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV----------ISWTT 148
             K  ++DE R++FD MP   +NVVSWT +V G  HNG +   E           +SWT 
Sbjct: 89  YMKNGEIDEARKVFDLMP--ERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTV 146

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           M  G  ++     A + +  +P+KD +A  +MI      G + +A E+F+ M +R+V TW
Sbjct: 147 MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITW 206

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRL 266
             M+  Y +N     A K+ ++M +      E + TS+L      G +E+  A  L    
Sbjct: 207 TTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIED--AEEL---- 256

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
            FE    +     C+ +    G + ++  AR  F+ ++ ++  SW  +I  +  +G   +
Sbjct: 257 -FEV-MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF  M K G +P   T + +LS C+    +  G++    + R   F       S L 
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLM 373

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +  + G++ ++  +  + P   +D ++  +++     HG
Sbjct: 374 TMYIKCGELVKSKLIFDRFP--SKDIIMWNSIISGYASHG 411



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 30/263 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G   +V +A K+FD M +   VS  SM+  +++N  +  AE LF  MP   + ++A +A
Sbjct: 213 YGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP--VKPVIACNA 270

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MI G  + G + +AR+VFD + E N  SW ++I  + +     E   LF  M    K  V
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ---KQGV 327

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKLAREYFVQMPNKDIVAWN 178
             T   L             IS  ++C  L      +    +L R  F    + D+   +
Sbjct: 328 RPTFPTL-------------ISILSVCASLASLHHGKQVHAQLVRCQF----DVDVYVAS 370

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFM 237
            ++T Y+  G + ++  +F+  P +++  WN++I  YA +G    A+K+   M       
Sbjct: 371 VLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTK 430

Query: 238 PNETTCTSILTSCE--GMLENML 258
           PNE T  + L++C   GM+E  L
Sbjct: 431 PNEVTFVATLSACSYAGMVEEGL 453



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 48/285 (16%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           T L R      AR+ F    +K I +WN+M+  Y        A +LF+ MP RN+ +WN 
Sbjct: 25  THLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNG 84

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM---LAHAL----- 262
           ++  Y +NG    A K+ +LM +     N  + T+++   +G + N    +A +L     
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPER----NVVSWTALV---KGYVHNGKVDVAESLFWKMP 137

Query: 263 --------AIRLGFEQETSLTYKCTCHYVFWD----------WGF--QLDVNSARLAFER 302
                    + +GF Q+  +   C  + +  D           G   +  V+ AR  F+ 
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDE 197

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  + V++WT M+  Y  +       ++F  M     +  E+++  +L      G +E  
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADI--LRRAGQVKEAMRVVSKM 405
            + F +M       P     +C A I  L + G++ +A RV   M
Sbjct: 254 EELFEVM-------PVKPVIACNAMISGLGQKGEIAKARRVFDSM 291


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 182/498 (36%), Positives = 273/498 (54%), Gaps = 25/498 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLR-NHDLPKAEALFRAMPESQRNIVAESAMID 66
           G V  A ++FD M + D VS  +++T   R   DLP A  LF  MP   RN+++ ++++ 
Sbjct: 21  GDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMP--SRNVISWNSVVA 78

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +  G +D A   F      NV SW ++++G  +  ++D+   LF  MP +  NVVS+T
Sbjct: 79  GCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQR--NVVSYT 136

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T+V G A  G +A+            ++SW  M TG   NAM   AR+ F  MP+K++VA
Sbjct: 137 TMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVA 196

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             AMIT Y   G++  A  LF+ +P ++V +WNAMI  Y  NG    AMKL  +MF+   
Sbjct: 197 CTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGV 256

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  T  +ILT+C  +    +    HA+A +   E  TS      C+ +   +    +V
Sbjct: 257 KPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSF-----CNALMTMYSKCGNV 311

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             + L F  L+ +D+VSW  +I AY+ HG   +   LF  M   G  P++IT + +LS C
Sbjct: 312 GESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSAC 371

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
            H G V    + F+LMS  Y   P AEHY+C+ DIL RAGQ+++A   + KM P E +  
Sbjct: 372 GHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKM-PFEAERN 430

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V GALLGA + HG+V++ +   + L++    SSG YV+ +N++AA G W E  +VR +M 
Sbjct: 431 VWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMK 490

Query: 473 ERRVKKVASFSQIEVKGK 490
           E+ VKK   +S  E+  K
Sbjct: 491 EKGVKKQPGYSWTEIANK 508



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 132/339 (38%), Gaps = 66/339 (19%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG-NMAQASELFNLMPQRNVWTWN 209
           T L R      AR  F  MP +D+V+WNA++TA   AG ++  A  LF+ MP RNV +WN
Sbjct: 15  TALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWN 74

Query: 210 AMIDRYARNGPEGAAMK----------------LLNLMFQSRF---------MPNETTCT 244
           +++     +G   AA                  L  L+   R          MP +    
Sbjct: 75  SVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMP-QRNVV 133

Query: 245 SILTSCEGML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           S  T  +G+     +A A  +     +   +++         +  F    + AR  FE +
Sbjct: 134 SYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMF----DEARKLFEAM 189

Query: 304 EAKDVVSWTAMILAYS-------------------------------NHGHGFQVFRLFA 332
             K+VV+ TAMI  Y                                ++GHG +  +L  
Sbjct: 190 PDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHI 249

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M + G KPD  T + +L+ CS   L+ +GR T  + ++    +      + L  +  + 
Sbjct: 250 IMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTM-LESSTSFCNALMTMYSKC 308

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           G V E+  V   M    +D V    ++ A   HG  + A
Sbjct: 309 GNVGESELVF--MNLKIQDIVSWNTIIAAYAQHGKYQKA 345



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 61/283 (21%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N  ITA   AG++A A  +F+ MP+R+V +WNA++    R G +  A + L     SR  
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSR-- 68

Query: 238 PNETTCTSILTSC--EGMLENMLAH----------------ALAIRLGFEQET-----SL 274
            N  +  S++  C   G L+   A+                A  +RLG   +       +
Sbjct: 69  -NVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEM 127

Query: 275 TYKCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
             +    Y     G   + +V  AR  F+ +  +++VSW AMI  Y  +    +  +LF 
Sbjct: 128 PQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFE 187

Query: 333 RMLKSGTKPDE--ITFVGVLSDCSHAGLVEKGRKTF-----------NLMSRAYGFKPRA 379
            M      PD+  +    +++     G VE  R+ F           N M   Y      
Sbjct: 188 AM------PDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHG 241

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           E    L  I+ R G           + P   DH  L A+L AC
Sbjct: 242 EEAMKLHIIMFREG-----------VKP---DHATLIAILTAC 270


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 294/535 (54%), Gaps = 43/535 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G V EA ++FD M + + +S   ++  ++ N  + +A  LF +  +S  ++++ 
Sbjct: 150 SGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES--KSDWDLISW 207

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++ G+V+  ++ +AR +FD++   +  SW ++ISGY +   + + RRLFD  P +  +
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR--D 265

Query: 122 VVSWTTVVLGCAHNGLIAKLEV----------ISWTTMCTGLERNAMTKLAREYFVQMPN 171
           V +WT +V G   NG++ + +           +S+  M  G  +     +ARE F  MP 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           ++I +WN MIT Y   G++AQA + F++MPQR+  +W A+I  YA++G    A+ +   +
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCTCH 281
            Q     N  T    L++C  +    L    H  A+++G+           ++ +KC   
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG-- 443

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      ++ A   FE +E KDVVSW  M+  Y+ HG G Q   +F  M  +G KP
Sbjct: 444 ----------SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           DEIT VGVLS CSH GL+++G + F  M++ YG  P ++HY+C+ D+L RAG+++EA  +
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           +  M P +      GALLGA R+HG+  + +   E + +++P +SG YVL +N++AA G 
Sbjct: 554 IRNM-PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGR 612

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           W +  ++R KM +  V+KV  +S +EV+ K HT        P +E  Y  L+E+D
Sbjct: 613 WVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELD 667



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 202/435 (46%), Gaps = 27/435 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G    A  +F+ M +   VS  +MI+ +LRN     A  LF  MPE  R++ + + M+ 
Sbjct: 62  NGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE--RDLFSWNVMLT 119

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+  R+ +AR++FD + E +V SW SL+SGY +   VDE R +FD MP   KN +SW 
Sbjct: 120 GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP--EKNSISWN 177

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++    HNG I          +  ++ISW  +  G  R      AR  F +MP +D ++
Sbjct: 178 GLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI+ Y   G ++QA  LF+  P R+V+TW AM+  Y +NG    A    + M +   
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             NE +  +++       +  +A  L   +     +S     T       +G   D+  A
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMIT------GYGQIGDIAQA 347

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  +D VSW A+I  Y+  GH  +   +F  + + G   +  TF   LS C+  
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             +E G++      +  G+       + L  +  + G + EA      +   E+D V   
Sbjct: 408 AALELGKQIHGQAVKM-GYGTGCFVGNALLAMYFKCGSIDEANDTFEGI--EEKDVVSWN 464

Query: 417 ALLGACRLHGDVRMA 431
            +L     HG  R A
Sbjct: 465 TMLAGYARHGFGRQA 479



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 51/293 (17%)

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + + ++  W   IS + +    D    +F+ MP +                         
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR-----------------------SS 80

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +S+  M +G  RN+   LAR  F QMP +D+ +WN M+T YV    +  A  LF+LMP++
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           +V +WN+++  YA+NG    A ++ +       MP + +      S  G+L      A  
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFD------NMPEKNS-----ISWNGLL------AAY 183

Query: 264 IRLGFEQETSLTYKCTCHYVFWDW-----GF--QLDVNSARLAFERLEAKDVVSWTAMIL 316
           +  G  +E  L ++    +    W     GF  +  +  AR  F+++  +D +SW  MI 
Sbjct: 184 VHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            Y+  G   Q  RLF    +S T+ D  T+  ++S     G++++ +  F+ M
Sbjct: 244 GYAQGGGLSQARRLFD---ESPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEM 292



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 68/283 (24%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           ++ + DI+ WN  I+ ++  G+   A  +FN MP+R+  ++NAMI  Y RN     A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
            + M +          T  + +C              RLG                    
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNC--------------RLG-------------------- 128

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                   AR  F+ +  KDVVSW +++  Y+ +G+  +   +F  M     + + I++ 
Sbjct: 129 -------DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWN 177

Query: 348 GVLSDCSHAGLVEKG------RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           G+L+   H G +E+       +  ++L+S           ++CL     R  ++ +A  +
Sbjct: 178 GLLAAYVHNGRIEEACLLFESKSDWDLIS-----------WNCLMGGFVRKKKLGDARWL 226

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
             KMP   RD +    ++      G +  A     RL +  P+
Sbjct: 227 FDKMPV--RDAISWNTMISGYAQGGGLSQA----RRLFDESPT 263


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 294/535 (54%), Gaps = 43/535 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G V EA ++FD M + + +S   ++  ++ N  + +A  LF +  +S  ++++ 
Sbjct: 150 SGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES--KSDWDLISW 207

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++ G+V+  ++ +AR +FD++   +  SW ++ISGY +   + + RRLFD  P +  +
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR--D 265

Query: 122 VVSWTTVVLGCAHNGLIAKLEV----------ISWTTMCTGLERNAMTKLAREYFVQMPN 171
           V +WT +V G   NG++ + +           +S+  M  G  +     +ARE F  MP 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           ++I +WN MIT Y   G++AQA + F++MPQR+  +W A+I  YA++G    A+ +   +
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCTCH 281
            Q     N  T    L++C  +    L    H  A+++G+           ++ +KC   
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG-- 443

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      ++ A   FE +E KDVVSW  M+  Y+ HG G Q   +F  M  +G KP
Sbjct: 444 ----------SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           DEIT VGVLS CSH GL+++G + F  M++ YG  P ++HY+C+ D+L RAG+++EA  +
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           +  M P +      GALLGA R+HG+  + +   E + +++P +SG YVL +N++AA G 
Sbjct: 554 IRNM-PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGR 612

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           W +  ++R KM +  V+KV  +S +EV+ K HT        P +E  Y  L+E+D
Sbjct: 613 WVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELD 667



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 202/435 (46%), Gaps = 27/435 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G    A  +F+ M +   VS  +MI+ +LRN     A  LF  MPE  R++ + + M+ 
Sbjct: 62  NGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE--RDLFSWNVMLT 119

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+  R+ +AR++FD + E +V SW SL+SGY +   VDE R +FD MP   KN +SW 
Sbjct: 120 GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP--EKNSISWN 177

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++    HNG I          +  ++ISW  +  G  R      AR  F +MP +D ++
Sbjct: 178 GLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI+ Y   G ++QA  LF+  P R+V+TW AM+  Y +NG    A    + M +   
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-- 295

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             NE +  +++       +  +A  L   +     +S     T       +G   D+  A
Sbjct: 296 --NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMIT------GYGQIGDIAQA 347

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  +D VSW A+I  Y+  GH  +   +F  + + G   +  TF   LS C+  
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             +E G++      +  G+       + L  +  + G + EA      +   E+D V   
Sbjct: 408 AALELGKQIHGQAVKM-GYGTGCFVGNALLAMYFKCGSIDEANDTFEGI--EEKDVVSWN 464

Query: 417 ALLGACRLHGDVRMA 431
            +L     HG  R A
Sbjct: 465 TMLAGYARHGFGRQA 479



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 51/293 (17%)

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + + ++  W   IS + +    D    +F+ MP +                         
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR-----------------------SS 80

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +S+  M +G  RN+   LAR  F QMP +D+ +WN M+T YV    +  A  LF+LMP++
Sbjct: 81  VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK 140

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           +V +WN+++  YA+NG    A ++ +       MP + +      S  G+L      A  
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFD------NMPEKNS-----ISWNGLL------AAY 183

Query: 264 IRLGFEQETSLTYKCTCHYVFWDW-----GF--QLDVNSARLAFERLEAKDVVSWTAMIL 316
           +  G  +E  L ++    +    W     GF  +  +  AR  F+++  +D +SW  MI 
Sbjct: 184 VHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMIS 243

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            Y+  G   Q  RLF    +S T+ D  T+  ++S     G++++ +  F+ M
Sbjct: 244 GYAQGGGLSQARRLFD---ESPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEM 292



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 76/314 (24%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           ++ + DI+ WN  I+ ++  G+   A  +FN MP+R+  ++NAMI  Y RN     A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
            + M +          T  + +C              RLG                    
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNC--------------RLG-------------------- 128

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                   AR  F+ +  KDVVSW +++  Y+ +G+  +   +F  M     + + I++ 
Sbjct: 129 -------DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWN 177

Query: 348 GVLSDCSHAGLVEKG------RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           G+L+   H G +E+       +  ++L+S           ++CL     R  ++ +A  +
Sbjct: 178 GLLAAYVHNGRIEEACLLFESKSDWDLIS-----------WNCLMGGFVRKKKLGDARWL 226

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS--------GAYVLSA 453
             KMP   RD +    ++      G +  A     RL +  P+            YV + 
Sbjct: 227 FDKMPV--RDAISWNTMISGYAQGGGLSQA----RRLFDESPTRDVFTWTAMVSGYVQNG 280

Query: 454 NVHAARGEWDEFAQ 467
            +  A+  +DE  +
Sbjct: 281 MLDEAKTFFDEMPE 294



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 38/140 (27%)

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           + GL++ G + F  M+  Y   P ++HY+C+ D+L R  +++E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
            GALLGA R+HG+  + +   +   ++ P +SG                    + K  + 
Sbjct: 819 -GALLGASRIHGNTELGEKAAQMFFKMGPQNSG--------------------ISKMRDV 857

Query: 475 RVKKVASFSQIEVKGKDHTL 494
            V+KV  +S  EV+ K HT 
Sbjct: 858 GVQKVPGYSWFEVQNKIHTF 877


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 286/506 (56%), Gaps = 28/506 (5%)

Query: 8   GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G ++EA +LFD + S+ + V+  +M++ +LR+  L  AE LF+ MPE  RNIV+ + MID
Sbjct: 91  GNMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPE--RNIVSWNTMID 148

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY ++GR+D+A ++FDE+ E N  SW ++I    +  ++DE   LF+RMP+K  +V+SWT
Sbjct: 149 GYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIK--DVISWT 206

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +V G A NG +           +  +ISW  M TG   N     A + F  MP +D  +
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFAS 266

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MIT ++    + +A  LF+ MPQ+NV +W AMI  Y  N     A+K+ + M +   
Sbjct: 267 WNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGC 326

Query: 237 M-PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           + PN  T  SIL++C    G++E    H L I     QE  +      +     +    +
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQL-ISKSVHQENEVVTSALINM----YSKSGE 381

Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           + +AR  F+   +  +D++SW +MI  Y++HGHG +   ++ +M K G KP E+T++ +L
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLL 441

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             CSHAGLVEKG + F  + R      R EHY+CL D+  RAG++K+ +  ++       
Sbjct: 442 FACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNFIN-CDDARL 500

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
                GA+L AC +H +V +A  + ++++E     +G YV+ +N++AA G+ ++ A++R 
Sbjct: 501 SRSFYGAILSACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRM 560

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLL 495
           KM E+ +KK    S +++  + H  +
Sbjct: 561 KMKEKGLKKQPGCSWVKIGNQTHLFV 586



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 189/377 (50%), Gaps = 29/377 (7%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I    K G++ EARK+FD + E +V +WT +I+GY K   + E R LFDR+  + KNVV
Sbjct: 52  LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSR-KNVV 110

Query: 124 SWTTVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           +WT +V G   +  ++  E          ++SW TM  G  ++     A E F +MP ++
Sbjct: 111 TWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERN 170

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V+WN MI A V  G + +A  LF  MP ++V +W AM+D  A+NG    A +L + M +
Sbjct: 171 TVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPE 230

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF--QL 291
              +      T    +      + L   +  R      T +T            GF    
Sbjct: 231 RNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMIT------------GFIRNR 278

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVL 350
           ++N A   F+R+  K+V+SWTAMI  Y  +    +  ++F++ML+ G  KP+  T+V +L
Sbjct: 279 EINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSIL 338

Query: 351 SDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           S CS  AGLVE G++   L+S++   +      S L ++  ++G++  A ++       +
Sbjct: 339 SACSDLAGLVE-GQQIHQLISKSV-HQENEVVTSALINMYSKSGELIAARKMFDNGLVCQ 396

Query: 410 RDHVVLGALLGACRLHG 426
           RD +   +++     HG
Sbjct: 397 RDLISWNSMIAVYAHHG 413


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 173/536 (32%), Positives = 281/536 (52%), Gaps = 56/536 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G + EA ++FDEM   + VS  +MI  + R+    +A   F  M +              
Sbjct: 114 GSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASIL 173

Query: 55  ---------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                                + N+   + ++D Y K G ++ AR++FD++ + +V SW 
Sbjct: 174 PACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWN 233

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL---EV 143
           ++I+GY +   +++  +LF  +P +  +V++W T++ G A  G       L  K+    +
Sbjct: 234 AMIAGYVQNGLIEDALKLFQEIPKR--DVITWNTMMAGYAQCGDVENAVELFEKMPEQNL 291

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +SW TM  G  +N   K A + F  MP +++++WNA+I+ +   G + +A +LF  MP+ 
Sbjct: 292 VSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPEC 351

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAH 260
           NV +WNAMI  Y++NG    A+KL   M      PN  T   +L +C  +    +   AH
Sbjct: 352 NVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAH 411

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
            + IR GF+ +  +       Y          +  AR  F+R+  +D  S +AMI+ Y+ 
Sbjct: 412 EVVIRSGFQSDVLVGNTLVGMYAKCG-----SIEDARKVFDRMRQQDSASLSAMIVGYAI 466

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G   +   LF +M  +G KPD +TFVGVLS C HAGLV++GR+ F++M+R Y   P  E
Sbjct: 467 NGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAME 526

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY C+ D+L RAG   EA  +++KMP  + D  + G+LL ACR H ++ + + + + LI 
Sbjct: 527 HYGCMIDLLGRAGCFDEANDLINKMPI-KPDADMWGSLLSACRTHNNIDLGEKVAQHLIA 585

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           L P +   YVL +N++AA G WD+   VR +M +R+VKK    S I +K + H  L
Sbjct: 586 LNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFL 641



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 16/264 (6%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           Q   +DI   N +++ YV  G++ +A  +F+ MP +NV +W AMI  YAR+     A+  
Sbjct: 94  QFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGF 153

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
              M      PN  T  SIL +C  +      H   ++ GFE    +       Y     
Sbjct: 154 FYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGC 213

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                +  AR  F+++  +DVVSW AMI  Y  +G      +LF  +     K D IT+ 
Sbjct: 214 -----IEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI----PKRDVITWN 264

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +++  +  G VE   + F  M      +     ++ +     + G VKEA ++   MP 
Sbjct: 265 TMMAGYAQCGDVENAVELFEKMP-----EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMP- 318

Query: 408 HERDHVVLGALLGACRLHGDVRMA 431
            ER+ +   A++     +G V  A
Sbjct: 319 -ERNVISWNAVISGFAQNGQVEEA 341



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 26/236 (11%)

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIR 265
           + ++    + G    A+ +L  M ++   P+ +T  S+L  C   + + +  L HA  I+
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 266 LGFE-QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             FE Q+ SL  K    YV         +  AR  F+ +  K+VVSWTAMI AY+ H HG
Sbjct: 93  TQFECQDISLGNKLVSIYVKLG-----SLVEARRVFDEMPVKNVVSWTAMIAAYARHEHG 147

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +    F  M   G +P+  TF  +L  C+   ++ +    F+      GF+      + 
Sbjct: 148 QEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE----FHDEIVKGGFESNVFVGNG 203

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           L D+  + G ++ A  +  KMP  +RD V   A++           A Y+   LIE
Sbjct: 204 LVDMYAKRGCIEFARELFDKMP--QRDVVSWNAMI-----------AGYVQNGLIE 246



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 55/239 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES- 54
           S F   G+V+EA KLF  M + + VS  +MI  + +N     A  LF  M      P + 
Sbjct: 330 SGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTE 389

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         Q +++  + ++  Y K G +++ARKVFD +
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LK-NVVSWTTVVLGCAHNGLIAKLE 142
            + +  S +++I GY       E   LF++M    LK + V++  V+  C H GL+ +  
Sbjct: 450 RQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDE-- 507

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                       R     + R Y +      +  +  MI     AG   +A++L N MP
Sbjct: 508 -----------GRQYFDIMTRFYHI---TPAMEHYGCMIDLLGRAGCFDEANDLINKMP 552


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 283/506 (55%), Gaps = 28/506 (5%)

Query: 8   GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G ++EA +LFD + S+ + V+  +M++ +LR+  L  AE LF+ MPE  RN+V+ + MID
Sbjct: 91  GDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE--RNVVSWNTMID 148

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY ++GR+D+A ++FDE+ E N+ SW S++    +  ++DE   LF+RMP +  +VVSWT
Sbjct: 149 GYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR--DVVSWT 206

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +V G A NG +           +  +ISW  M TG  +N     A + F  MP +D  +
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFAS 266

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-R 235
           WN MIT ++    M +A  LF+ MP++NV +W  MI  Y  N     A+ + + M +   
Sbjct: 267 WNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGS 326

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PN  T  SIL++C    G++E    H L  +   ++   +T      Y         +
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMY-----SKSGE 381

Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           + +AR  F+   +  +D++SW +MI  Y++HGHG +   ++ +M K G KP  +T++ +L
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             CSHAGLVEKG + F  + R      R EHY+CL D+  RAG++K+    ++       
Sbjct: 442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFIN-CDDARL 500

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
                GA+L AC +H +V +A  + ++++E     +G YVL +N++AA G+ +E A++R 
Sbjct: 501 SRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRM 560

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLL 495
           KM E+ +KK    S ++V  ++H  +
Sbjct: 561 KMKEKGLKKQPGCSWVKVGKQNHLFV 586



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 196/382 (51%), Gaps = 39/382 (10%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I    K G++ EARK+FD + E +V +WT +I+GY K   + E R LFDR+  + KNVV
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSR-KNVV 110

Query: 124 SWTTVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           +WT +V G   +  ++  E          V+SW TM  G  ++     A E F +MP ++
Sbjct: 111 TWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERN 170

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           IV+WN+M+ A V  G + +A  LF  MP+R+V +W AM+D  A+NG    A +L + M +
Sbjct: 171 IVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE 230

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW-----G 288
                N  +  +++T           +A   R+    E    ++      F  W     G
Sbjct: 231 R----NIISWNAMIT----------GYAQNNRI---DEADQLFQVMPERDFASWNTMITG 273

Query: 289 F--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEIT 345
           F    ++N A   F+R+  K+V+SWT MI  Y  +    +   +F++ML+ G+ KP+  T
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGT 333

Query: 346 FVGVLSDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           +V +LS CS  AGLVE G++   L+S++   K      S L ++  ++G++  A ++   
Sbjct: 334 YVSILSACSDLAGLVE-GQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARKMFDN 391

Query: 405 MPPHERDHVVLGALLGACRLHG 426
               +RD +   +++     HG
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHG 413



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 159/318 (50%), Gaps = 64/318 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +  +G++ +A +LFDEM + + VS  SM+   ++   + +A  LF  MP  +R++V+ +A
Sbjct: 150 YAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMP--RRDVVSWTA 207

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+DG  K G+VDEAR++FD + E N+ SW ++I+GY +  ++DE  +LF  MP   ++  
Sbjct: 208 MVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMP--ERDFA 265

Query: 124 SWTTVVLGCAHN-------GLIAKL---EVISWTTMCTGLERNAMTKLAREYFVQM---- 169
           SW T++ G   N       GL  ++    VISWTTM TG   N   + A   F +M    
Sbjct: 266 SWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDG 325

Query: 170 ---PN---------------------------------KDIVAWNAMITAYVDAGNMAQA 193
              PN                                 K+ +  +A++  Y  +G +  A
Sbjct: 326 SVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAA 385

Query: 194 SELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            ++F+  L+ QR++ +WN+MI  YA +G    A+++ N M +  F P+  T  ++L +C 
Sbjct: 386 RKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFAC- 444

Query: 252 GMLENMLAHALAIRLGFE 269
                  +HA  +  G E
Sbjct: 445 -------SHAGLVEKGME 455


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 265/484 (54%), Gaps = 24/484 (4%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  VS  S++  ++R+  L  A  LFR MPE  RN ++ + ++ G++ AGRVDEARK+FD
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIQLFRQMPE--RNHISYTVLLGGFLDAGRVDEARKLFD 167

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---LIA 139
           E+   +V +WT+++SGY +  +VDE R LFD MP +  NVVSWT +V G A NG   L  
Sbjct: 168 EMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKR--NVVSWTAMVSGYAQNGQVNLAR 225

Query: 140 KL-EV------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           KL EV      +SWT M  G  +    + A E F  MP+  + A N MI  +   G +  
Sbjct: 226 KLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDA 285

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F+ M +R+  TW+A+I  Y +N     A+     M      PN  +  SILT C  
Sbjct: 286 AKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAA 345

Query: 253 ML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           +         H   +R  F+ +          Y+        +++ A+  F   E KDVV
Sbjct: 346 LAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCG-----NLDKAKRVFHMFEPKDVV 400

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            W +MI  Y+ HG G +   +F  M  +G  PD IT++G L+ CS+ G V++GR  FN M
Sbjct: 401 MWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSM 460

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
               G KP  EHY+C+ D+L RAG V EA+ ++  MP  E D V+ GAL+GACR+H +  
Sbjct: 461 RTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPV-EPDAVIWGALMGACRMHKNAE 519

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +A+   ++L+EL+P ++G YVL ++++ + G W++ + +RK +  R + K    S IE  
Sbjct: 520 IAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYD 579

Query: 489 GKDH 492
            + H
Sbjct: 580 KRVH 583



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 190/429 (44%), Gaps = 73/429 (17%)

Query: 49  RAMPESQRNIVAES-AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           R +P S    V ++ A I    + G ++ AR  F+ +      S+ +L++GYF+    D 
Sbjct: 7   RFLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDA 66

Query: 108 GRRLFDRMP-------------LKLK------------------NVVSWTTVVLGCAHNG 136
             R+F RMP             L L+                  +VVS+T+++ G   +G
Sbjct: 67  ALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHG 126

Query: 137 LIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
           L+A          +   IS+T +  G         AR+ F +MP KD+VAW AM++ Y  
Sbjct: 127 LLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQ 186

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G + +A  LF+ MP+RNV +W AM+  YA+NG    A KL  +M +     NE + T++
Sbjct: 187 VGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER----NEVSWTAM 242

Query: 247 L---------TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           L            E +   M  H LA                C+ +   +G Q  V++A+
Sbjct: 243 LFGYIQAGRIEDAEELFNAMPDHPLA---------------ACNGMIVGFGQQGMVDAAK 287

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+R+  +D  +W+A+I AY  +    +    F  ML  G +P+  + + +L+ C+   
Sbjct: 288 SVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALA 347

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           +++ GR+    M R   F       S L  +  + G + +A RV     P  +D V+  +
Sbjct: 348 VLDYGREVHGAMLRR-SFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEP--KDVVMWNS 404

Query: 418 LLGACRLHG 426
           ++     HG
Sbjct: 405 MITGYAQHG 413



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 53/292 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA KLFDEM   D V+  +M++ + +   + +A  LF  MP  +RN+V+ +AM+ G
Sbjct: 157 GRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMP--KRNVVSWTAMVSG 214

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G+V+ ARK+F+ + E N  SWT+++ GY +A ++++   LF+ MP     + +   
Sbjct: 215 YAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMP--DHPLAACNG 272

Query: 128 VVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQM------PN 171
           +++G    G++   + +          +W+ +    E+N     A   F +M      PN
Sbjct: 273 MIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPN 332

Query: 172 ---------------------------------KDIVAWNAMITAYVDAGNMAQASELFN 198
                                             DI A +A+IT Y+  GN+ +A  +F+
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFH 392

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +   ++V  WN+MI  YA++G    A+ + + M  +  +P+  T    LT+C
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTAC 444


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/539 (33%), Positives = 291/539 (53%), Gaps = 67/539 (12%)

Query: 6   CTGK-VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           C GK V+ A  +FD+M + D VS  +M++ + ++  + KAE LF  MPE  RN+V+ +AM
Sbjct: 132 CGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPE--RNVVSWNAM 189

Query: 65  IDGYVKAGRVDEARKVF---------------------DEI---------YEGNV----- 89
           + GY+  G V++A + F                     D++         Y GNV     
Sbjct: 190 VSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDL 249

Query: 90  -YSWTSLISGYFKARQVDEGRRLFDRMPL------KLKNVVSWTTVVLGCAHNGLIA--- 139
             ++ +LI+GY +     E R+LFDR+PL        +NV+SW ++++     G I    
Sbjct: 250 VDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSAR 309

Query: 140 -------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                  + +  SW TM +G  +    K A   F +MP  D ++WN MI+ + + G++  
Sbjct: 310 ELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKL 369

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF  +P++++ +WN+MI  Y +N     AM +   M      P+  T +SIL++C G
Sbjct: 370 AHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAG 429

Query: 253 MLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDV 308
           +++ +L    H L  +  F  +  +       Y          +  AR+ F+ +   +DV
Sbjct: 430 LVDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCG-----AIVEARMVFDEMNLQRDV 483

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           +SW AMI  Y+ HG   +  +LF  M +   +P  ITF+ VL+ C+HAGL+E+GR+ FN 
Sbjct: 484 ISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNS 543

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M   +G KP+ EHY+ L DI+ R GQ++EAM +++ MP  E D  V GALLGAC++H +V
Sbjct: 544 MVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC-EPDKAVWGALLGACKVHNNV 602

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
            MA    E L++LQP SS  YVL  N++A  G WD+ A++R  ME+  V+K A +S+++
Sbjct: 603 EMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 236/485 (48%), Gaps = 55/485 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG++ EA +LFD     + ++   MIT +++  ++ KA  LF  MP   R+IV+ + M+ 
Sbjct: 70  TGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP--NRDIVSWNLMLS 127

Query: 67  GYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           GY+  G   V+ AR +FD++ E +  SW +++SGY K+  +D+   LF+ MP   +NVVS
Sbjct: 128 GYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMP--ERNVVS 185

Query: 125 WTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERN----AMTKLAREYFVQMP 170
           W  +V G   NG          L+ K +  S   + +GL +N       ++  +Y   + 
Sbjct: 186 WNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVG 245

Query: 171 NKDIV-AWNAMITAYVDAGNMAQASELFNLMP--------QRNVWTWNAMIDRYARNGPE 221
             D+V A+N +I  Y   G   +A +LF+ +P        +RNV +WN+MI  Y R G  
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
            +A +L + M +     +  +  ++++    +L+   A  L  R+   +  +L++     
Sbjct: 306 VSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRM--PEPDTLSWNMMIS 359

Query: 282 YVFWDWGFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 GF  ++ S +LA   F+R+  K +VSW +MI  Y  +        +F +M   G
Sbjct: 360 ------GFS-EIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412

Query: 339 TKPDEITFVGVLSDCSHAGLVE--KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            KPD  T   +LS C  AGLV+   G +   L+++A  F       + L  +  R G + 
Sbjct: 413 KKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKA--FIADLPINNSLVTMYSRCGAIV 468

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSA 453
           EA  V  +M   +RD +   A++G    HG    A  + + + +  +QPS  +   VL+A
Sbjct: 469 EARMVFDEMNL-QRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNA 527

Query: 454 NVHAA 458
             HA 
Sbjct: 528 CAHAG 532



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 177/411 (43%), Gaps = 100/411 (24%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I   ++ GR++EAR++FD     N  +W  +I+ Y K R++ + R+LF+ MP +  ++VS
Sbjct: 64  ISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR--DIVS 121

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           W  ++     +G I+          C G       + AR  F QMP  D V+WN M++ Y
Sbjct: 122 WNLML-----SGYIS----------CGG----KFVERARNMFDQMPETDCVSWNTMLSGY 162

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
             +G M +A ELFN MP+RNV +WNAM+  Y  NG    A++   L      MP   +  
Sbjct: 163 AKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKL------MPKRDS-A 215

Query: 245 SILTSCEGMLEN-MLAHALAIRL--------------------GFEQETSLTYK------ 277
           S+     G+++N  L  A  I L                    G+ Q+  + Y+      
Sbjct: 216 SLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQK-GMAYEARKLFD 274

Query: 278 -----CTCHY-----VFWDWGFQL-----DVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                C C Y     + W+          D+ SAR  F+++  +D  SW  MI  Y    
Sbjct: 275 RIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQIL 334

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-----------LVEKGRKTFNLMSR 371
              +   LF+RM     +PD +++  ++S  S  G           + EK   ++N M  
Sbjct: 335 DMKEASNLFSRM----PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMIS 390

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
            Y    + E Y    +I  +       M++  K P    D   L ++L AC
Sbjct: 391 GY---EKNEDYKGAMNIFLQ-------MQLEGKKP----DRHTLSSILSAC 427


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 254/456 (55%), Gaps = 37/456 (8%)

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +  R  EARK+FD++ E N  SW  L+SGY +   + E R++FD+MP +  NVVSWT
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPER--NVVSWT 60

Query: 127 TVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G    GLI + E          V+SWT M  GL  +     AR+ F  MP KD+VA
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA 120

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV--WT-----------WNAMIDRYARNGPEGA 223
              MI      G + +A E+F+ MPQRNV  WT           W+ MI  Y R G E  
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCT 279
           A+ L +LM +    P+  +  S+L+ C G L ++      H+  +R  F+ +  ++    
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVC-GSLASLDHGRQVHSQLVRSQFDIDIYVSSVLI 239

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y+        D+ +A+  F+R  +KD+V W ++I  Y+ HG G +   +F  M  S  
Sbjct: 240 TMYIKCG-----DLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSI 294

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            PDEITF+GVLS CS+ G V++G + F  M   Y   P+ EHY+C+ D+L RAG++ EAM
Sbjct: 295 APDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAM 354

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++  MP  E D +V GALLGACR H ++ +A+   ++L++L+P+++G Y+L +N+++++
Sbjct: 355 NLIENMPV-EADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQ 413

Query: 460 GEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTL 494
             W +  ++RK M  + ++K    S IEV  K H  
Sbjct: 414 SRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIF 449



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 43/279 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G + EA K+FD+M + + VS  +MI  +++   + +AE LF  MPE  RN+V+ + M+ 
Sbjct: 38  NGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPE--RNVVSWTVMLG 95

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G ++ GRVDEAR++FD +   +V + T++I G     ++ E R +FD MP   +NVV+WT
Sbjct: 96  GLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMP--QRNVVAWT 153

Query: 127 TVVLGCAHNGLIAKL------------------------------EVISWTTMCTGLE-- 154
           +++ G   +G  + +                               VIS  ++C  L   
Sbjct: 154 SMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASL 213

Query: 155 ---RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
              R   ++L R  F    + DI   + +IT Y+  G++  A  +F+    +++  WN++
Sbjct: 214 DHGRQVHSQLVRSQF----DIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSI 269

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           I  YA++G    A+++ + MF S   P+E T   +L++C
Sbjct: 270 IAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSAC 308



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 29/232 (12%)

Query: 12  EATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           EA  LF  M +    P   S  S+++V      L     +   +  SQ   +I   S +I
Sbjct: 180 EALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLI 239

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVV 123
             Y+K G +  A++VFD     ++  W S+I+GY +    ++   +F  M       + +
Sbjct: 240 TMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEI 299

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           ++  V+  C++ G + +           GLE      +  +Y V  P  +  A   M+  
Sbjct: 300 TFIGVLSACSYTGKVKE-----------GLE--IFESMKSKYQVD-PKTEHYA--CMVDL 343

Query: 184 YVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARN--GPEGAAMKLLNL 230
              AG + +A  L   MP + +   W A++   R  +N    E AA KLL L
Sbjct: 344 LGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQL 395


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/541 (33%), Positives = 291/541 (53%), Gaps = 67/541 (12%)

Query: 4   FGCTGK-VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
             C GK V+ A  +FD+M + D VS  +M++ + ++  + KAE LF  MPE  RN+V+ +
Sbjct: 130 ISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPE--RNVVSWN 187

Query: 63  AMIDGYVKAGRVDEARKVF---------------------DEI---------YEGNV--- 89
           AM+ GY+  G V++A + F                     D++         Y GNV   
Sbjct: 188 AMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKG 247

Query: 90  ---YSWTSLISGYFKARQVDEGRRLFDRMPL------KLKNVVSWTTVVLGCAHNGLIA- 139
               ++ +LI+GY +     E R+LFDR+PL        +NV+SW ++++     G I  
Sbjct: 248 DLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVS 307

Query: 140 ---------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
                    + +  SW TM +G  +    K A   F +MP  D ++WN MI+ + + G++
Sbjct: 308 ARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSL 367

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A +LF  +P++++ +WN+MI  Y +N     AM +   M      P+  T +SIL++C
Sbjct: 368 KLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC 427

Query: 251 EGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AK 306
            G+++ +L    H L  +  F  +  +       Y          +  AR+ F+ +   +
Sbjct: 428 AGLVDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCG-----AIVEARMVFDEMNLQR 481

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DV+SW AMI  Y+ HG   +  +LF  M +   +P  ITF+ VL+ C+HAGL+E+GR+ F
Sbjct: 482 DVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREF 541

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           N M   +G KP+ EHY+ L DI+ R GQ++EAM +++ MP  E D  V GALLGAC++H 
Sbjct: 542 NSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC-EPDKAVWGALLGACKVHN 600

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQI 485
           +V MA    E L++LQP SS  YVL  N++A  G WD+ A++R  ME+  V+K A +S++
Sbjct: 601 NVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRV 660

Query: 486 E 486
           +
Sbjct: 661 D 661



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 236/485 (48%), Gaps = 55/485 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG++ EA +LFD     + ++   MIT +++  ++ KA  LF  MP   R+IV+ + M+ 
Sbjct: 70  TGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP--NRDIVSWNLMLS 127

Query: 67  GYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           GY+  G   V+ AR +FD++ E +  SW +++SGY K+  +D+   LF+ MP   +NVVS
Sbjct: 128 GYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMP--ERNVVS 185

Query: 125 WTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERN----AMTKLAREYFVQMP 170
           W  +V G   NG          L+ K +  S   + +GL +N       ++  +Y   + 
Sbjct: 186 WNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVG 245

Query: 171 NKDIV-AWNAMITAYVDAGNMAQASELFNLMP--------QRNVWTWNAMIDRYARNGPE 221
             D+V A+N +I  Y   G   +A +LF+ +P        +RNV +WN+MI  Y R G  
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
            +A +L + M +     +  +  ++++    +L+   A  L  R+   +  +L++     
Sbjct: 306 VSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRM--PEPDTLSWNMMIS 359

Query: 282 YVFWDWGFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 GF  ++ S +LA   F+R+  K +VSW +MI  Y  +        +F +M   G
Sbjct: 360 ------GFS-EIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412

Query: 339 TKPDEITFVGVLSDCSHAGLVE--KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            KPD  T   +LS C  AGLV+   G +   L+++A  F       + L  +  R G + 
Sbjct: 413 KKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKA--FIADLPINNSLVTMYSRCGAIV 468

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSA 453
           EA  V  +M   +RD +   A++G    HG    A  + + + +  +QPS  +   VL+A
Sbjct: 469 EARMVFDEMNL-QRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNA 527

Query: 454 NVHAA 458
             HA 
Sbjct: 528 CAHAG 532



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 177/411 (43%), Gaps = 100/411 (24%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I   ++ GR++EAR++FD     N  +W  +I+ Y K R++ + R+LF+ MP +  ++VS
Sbjct: 64  ISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR--DIVS 121

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           W  ++     +G I+          C G       + AR  F QMP  D V+WN M++ Y
Sbjct: 122 WNLML-----SGYIS----------CGG----KFVERARNMFDQMPETDCVSWNTMLSGY 162

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
             +G M +A ELFN MP+RNV +WNAM+  Y  NG    A++   L      MP   +  
Sbjct: 163 AKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKL------MPKRDS-A 215

Query: 245 SILTSCEGMLEN-MLAHALAIRL--------------------GFEQETSLTYK------ 277
           S+     G+++N  L  A  I L                    G+ Q+  + Y+      
Sbjct: 216 SLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQK-GMAYEARKLFD 274

Query: 278 -----CTCHY-----VFWDWGFQL-----DVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                C C Y     + W+          D+ SAR  F+++  +D  SW  MI  Y    
Sbjct: 275 RIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQIL 334

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-----------LVEKGRKTFNLMSR 371
              +   LF+RM     +PD +++  ++S  S  G           + EK   ++N M  
Sbjct: 335 DMKEASNLFSRM----PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMIS 390

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
            Y    + E Y    +I  +       M++  K P    D   L ++L AC
Sbjct: 391 GY---EKNEDYKGAMNIFLQ-------MQLEGKKP----DRHTLSSILSAC 427



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 124/335 (37%), Gaps = 49/335 (14%)

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           F R P+    V  +       +        E  S     + L R      ARE F    +
Sbjct: 26  FHRRPVLFNIVFQFKQTCFSSSKANSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEH 85

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            + + WN MITAYV    M +A +LF  MP R++ +WN M+  Y   G  G  ++    M
Sbjct: 86  WNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCG--GKFVERARNM 143

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
           F    MP ET C S  T   G  ++ +                                 
Sbjct: 144 FDQ--MP-ETDCVSWNTMLSGYAKSGM--------------------------------- 167

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ++ A   F  +  ++VVSW AM+  Y  +GH  +    F  M K  +        G++ 
Sbjct: 168 -MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQ 226

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP----- 406
           +     LVE  R          G     + Y+ L     + G   EA ++  ++P     
Sbjct: 227 N---DKLVEAERILLQYGGNV-GKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDC 282

Query: 407 PHERDHVVLGALLGACRLH-GDVRMADYIGERLIE 440
            + R +V+    +  C +  GD+  A  + ++++E
Sbjct: 283 GYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVE 317


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 266/495 (53%), Gaps = 42/495 (8%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D +   S++ +F+R   +  A   F  M E  ++IV+ + MI GY    RVD ARK FD 
Sbjct: 135 DLIVQNSVLDLFMRCRKVDTARQAFDEMCE--KDIVSWNMMISGYGNNDRVDIARKFFDR 192

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E NV SWTS+I GY KA  + E + LFD MP+K  ++ SW  +V G    G      +
Sbjct: 193 MPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVK--DLASWNVMVSGYMDIGDCVNARI 250

Query: 144 I----------SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           I          SW  M +G  +    + A+++F +MPNK++++W  M+  Y+  G+   A
Sbjct: 251 IFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGA 310

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--- 250
             LF+ MP +N+ TW+ MI  YARNG    A++L     +    P+ET    I+++C   
Sbjct: 311 RCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQL 370

Query: 251 ------EGMLENMLAHALAIRLG-FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
                 E ++ N +  +L   L  F     +  KC              +  A   FE  
Sbjct: 371 GIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCG------------SIEKALQMFEMA 418

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             KD++ ++ MI A +NHG G     LF +M ++  KPD +TF+GVL+ C+H GLV++GR
Sbjct: 419 HPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGR 478

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGA 421
           K F  M+  +G +P  +HY+C+ D+L R G ++EA  ++  MP  PH    VV GALL A
Sbjct: 479 KYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHS---VVWGALLAA 535

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVA 480
           CR+H +V++A+     L +++P +SG Y+L +N++AA G W   A+VR K+ E RV+K  
Sbjct: 536 CRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNR 595

Query: 481 SFSQIEVKGKDHTLL 495
             S IE+    H  +
Sbjct: 596 GSSWIELSHVVHEFV 610



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 209/467 (44%), Gaps = 89/467 (19%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLK------ 118
           Y + G  D A KVFDEI + N Y WTSLI GY + RQ DE   LF +M   P+       
Sbjct: 45  YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104

Query: 119 ---LKNVVSWTTVVLGCAHNGLIAKL---------------------------------- 141
              LK +   T    G A  G + K                                   
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164

Query: 142 -EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +++SW  M +G   N    +AR++F +MP +++V+W +MI  YV AG+MA+A  LF+ M
Sbjct: 165 KDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSM 224

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP-NETTCTSILTS--CE-GMLEN 256
           P +++ +WN M+  Y   G        +N       MP ++T   +I+ S  C+ G LE+
Sbjct: 225 PVKDLASWNVMVSGYMDIG------DCVNARIIFGKMPIHDTGSWNIMISGFCKAGELES 278

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-------DVNSARLAFERLEAKDVV 309
             A     R+  +   S             WG  L       D N AR  F+++  K++V
Sbjct: 279 --AKDFFDRMPNKNVIS-------------WGIMLDGYIKNGDTNGARCLFDQMPMKNLV 323

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-NL 368
           +W+ MI  Y+ +G   +   LF R  +   KPDE   +G++S CS  G+++       N 
Sbjct: 324 TWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNY 383

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           +  +     R   ++ L D+  + G +++A+++      H +D +    ++ A   HG  
Sbjct: 384 VGPSLLSDLRV--FTSLIDMYAKCGSIEKALQMFEM--AHPKDLLCYSTMIAALANHGLG 439

Query: 429 RMADYIGERL--IELQPSS-SGAYVLSANVHAARGEWDEFAQVRKKM 472
           R A ++ +++    ++P S +   VL+A  H   G  DE  +  K+M
Sbjct: 440 RDAIFLFDKMQRANIKPDSVTFLGVLTACNHG--GLVDEGRKYFKQM 484



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++  Y   G    A ++F+ + Q N + W ++I  Y  N     A  L   M +    
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 238 PNETTCTSILTSCEGMLE---NMLAHALAIRLGFE-----QETSLTYKCTCHYVFWDWGF 289
               T +S+L +   +         +   ++ GF      Q + L     C         
Sbjct: 99  VLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCR-------- 150

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
              V++AR AF+ +  KD+VSW  MI  Y N+       + F RM
Sbjct: 151 --KVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRM 193



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +++A ++F EM+ P  + C S +   L NH L + +A+F      + NI  +S    G
Sbjct: 406 GSIEKALQMF-EMAHPKDLLCYSTMIAALANHGLGR-DAIFLFDKMQRANIKPDSVTFLG 463

Query: 68  YVKA----GRVDEARKVFDEIYE-----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
            + A    G VDE RK F ++ E      +   +  ++    +   ++E   L   MP+ 
Sbjct: 464 VLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIA 523

Query: 119 LKNVVSWTTVVLGC 132
             +VV W  ++  C
Sbjct: 524 PHSVV-WGALLAAC 536


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 178/503 (35%), Positives = 277/503 (55%), Gaps = 25/503 (4%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLR-NHDLPKAEALFRAMPESQRNIVAESAMID 66
           G V  A ++FD M + D VS  +++T   R   DLP A +LF  MP   RN+++ +++I 
Sbjct: 30  GDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMP--SRNVISWNSIIA 87

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +  G +  A   F      NV SW ++++G  +   +++ R LFD+MP +  NVVS+T
Sbjct: 88  GCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPER--NVVSYT 145

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T+V G A  G +A             ++SW  M +G   N M + AR+ F  MP K++VA
Sbjct: 146 TMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVA 205

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             AMIT Y   G++  A  LF+ +  ++V +WNA+I  Y  NG    A KL  +M +   
Sbjct: 206 CTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGI 265

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P++ T  ++LT+C  +    +    HA+ I+   E   S+     C+ +   +    +V
Sbjct: 266 KPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISI-----CNALMTMYSKCGNV 320

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           + + L F  L+++D+VSW  +I AY+ HG   +V  LF  M   G  P++ITF+ +LS C
Sbjct: 321 DESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSAC 380

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
            HAG V++  K F+LM   Y   PRAEHY+C+ DIL RAGQ+++A   + +MP  E +  
Sbjct: 381 GHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPS-EAEKN 439

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V G LL A + HG+V++ +   + L+     SSGAYV+ +N++AA G W E  +VR +M 
Sbjct: 440 VWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMK 499

Query: 473 ERRVKKVASFSQIEVKGKDHTLL 495
           E+ VKK    S  E+  K H  +
Sbjct: 500 EKGVKKQPGHSWTEIADKVHMFV 522



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 53/262 (20%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG-NMAQASELFNLMPQRNVWTWN 209
           T L R      AR  F  MP +D V+WNA++TA   AG ++  A  LF+ MP RNV +WN
Sbjct: 24  TALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISWN 83

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
           ++I     +G       L          P        + S   ML  +      +RLG  
Sbjct: 84  SIIAGCLAHG------DLAAASAYFARAPRRN-----VASWNAMLAGL------VRLGSM 126

Query: 270 QETSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           ++    +          +   +D       V SAR  F+ +  +++VSW AMI  Y ++ 
Sbjct: 127 EDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNN 186

Query: 323 HGFQVFRLF--------------------------ARMLKSGTKP-DEITFVGVLSDCSH 355
              +  +LF                          AR L  G +  D I++  ++S   H
Sbjct: 187 MLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVH 246

Query: 356 AGLVEKGRKTFNLMSRAYGFKP 377
            GL E+  K + +M R  G KP
Sbjct: 247 NGLGEEATKLYIIMLRE-GIKP 267


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 290/543 (53%), Gaps = 59/543 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMIT-------------VFLRN---------- 38
           +Q G  GK+ EA ++F+EM   D VS  ++IT             +F RN          
Sbjct: 74  TQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWT 133

Query: 39  ---------HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                    + + +A  LF AMP   +N+++ + MI+GY + G +D+A  +F+++ E NV
Sbjct: 134 ALVSGYVRWNRIEEARRLFDAMP--VKNVISWNTMIEGYARKGWIDQALDLFEKMPERNV 191

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI--AKL------ 141
            SW ++I+ + + R+VDE + LF+RMP +  +V+SWTT+V G + NG I  A+L      
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMPER--DVISWTTMVAGLSKNGRIDDARLLFDKMP 249

Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
              V+SW TM  G  +N     A + F QMP +++ +WN MIT ++  G + +A + F  
Sbjct: 250 VRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYK 309

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCE---GMLE 255
           M  +NV TW A+I  + ++G    A+K+ + M   +   PNE T  S+L +C     + E
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE--RLEAKDVVSWTA 313
               H +  +  +++   +       Y         ++  AR  F+   +  +DVVSW  
Sbjct: 370 GQQIHQIISKTVYQEVADVVSALINMYSKCG-----ELELARKIFDDGSIGHRDVVSWNG 424

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI AY++HGHG +   LF  M   G +PD +T++ +LS CSHAGLV++G K F  + R  
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
             K R +H++CL D+  RAG+++EA   +  +   +    V  ALL  C +HG + +   
Sbjct: 485 SIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEV-KPSASVWAALLAGCNVHGHIDLGKL 543

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             E+L+E +P ++G Y++ +N++A+ G+W E A VR KM ++ +KK    S IEV    H
Sbjct: 544 TAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVH 603

Query: 493 TLL 495
             +
Sbjct: 604 VFV 606



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 200/400 (50%), Gaps = 30/400 (7%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           +PK  +  R    +  N+   + +I    K G++ EAR+VF+E+ + +V SWT++I+GY 
Sbjct: 50  VPKISSPVRDFS-ANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYI 108

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMC 150
           K   ++E + LFDR    +KNVV+WT +V G      I +            VISW TM 
Sbjct: 109 KCGMIEEAKTLFDRND-AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMI 167

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            G  R      A + F +MP +++V+WN +ITA++    + +A ELFN MP+R+V +W  
Sbjct: 168 EGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTT 227

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALAIRLGFE 269
           M+   ++NG    A     L+F    + N  +  +++    G  +NM L  A  +   FE
Sbjct: 228 MVAGLSKNGRIDDA----RLLFDKMPVRNVVSWNTMII---GYAQNMRLDEAFKL---FE 277

Query: 270 Q--ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           Q  E  L+   T    F   G    +  A   F ++  K+VV+WTA+I  +   G   + 
Sbjct: 278 QMPERELSSWNTMITGFIQNG---KLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEA 334

Query: 328 FRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
            ++F+ M   +  KP+E TFV VL  CS    + +G++   ++S+   ++  A+  S L 
Sbjct: 335 LKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTV-YQEVADVVSALI 393

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           ++  + G+++ A ++        RD V    ++ A   HG
Sbjct: 394 NMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHG 433


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 289/543 (53%), Gaps = 59/543 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMIT-------------VFLRN---------- 38
           +Q G  GK+ EA ++F+EM   D VS  ++IT             +F RN          
Sbjct: 74  TQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWT 133

Query: 39  ---------HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                    + + +A  LF AMP   +N+++ + MI+GY + G +D+A  +F+ + E NV
Sbjct: 134 ALVSGYVRWNRIEEARRLFDAMP--VKNVISWNTMIEGYARKGWIDQALDLFEXMPERNV 191

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI--AKL------ 141
            SW ++I+ + + R+VDE + LF+RMP +  +V+SWTT+V G + NG I  A+L      
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMPER--DVISWTTMVAGLSKNGRIDDARLLFDKMP 249

Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
              V+SW TM  G  +N     A + F QMP +++ +WN MIT ++  G + +A + F  
Sbjct: 250 VRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYK 309

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCE---GMLE 255
           M  +NV TW A+I  + ++G    A+K+ + M   +   PNE T  S+L +C     + E
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE--RLEAKDVVSWTA 313
               H +  +  +++   +       Y         ++  AR  F+   +  +DVVSW  
Sbjct: 370 GQQIHQIISKTVYQEVADVVSALINMYSKCG-----ELELARKIFDDGSIGHRDVVSWNG 424

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI AY++HGHG +   LF  M   G +PD +T++ +LS CSHAGLV++G K F  + R  
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
             K R +H++CL D+  RAG+++EA   +  +   +    V  ALL  C +HG + +   
Sbjct: 485 SIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEV-KPSASVWAALLAGCNVHGHIDLGKL 543

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             E+L+E +P ++G Y++ +N++A+ G+W E A VR KM ++ +KK    S IEV    H
Sbjct: 544 TAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVH 603

Query: 493 TLL 495
             +
Sbjct: 604 VFV 606



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 199/400 (49%), Gaps = 30/400 (7%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           +PK  +  R    +  N+   + +I    K G++ EAR+VF+E+ + +V SWT++I+GY 
Sbjct: 50  VPKISSPVRDFS-ANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYI 108

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMC 150
           K   ++E + LFDR    +KNVV+WT +V G      I +            VISW TM 
Sbjct: 109 KCGMIEEAKTLFDRND-AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMI 167

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            G  R      A + F  MP +++V+WN +ITA++    + +A ELFN MP+R+V +W  
Sbjct: 168 EGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTT 227

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALAIRLGFE 269
           M+   ++NG    A     L+F    + N  +  +++    G  +NM L  A  +   FE
Sbjct: 228 MVAGLSKNGRIDDA----RLLFDKMPVRNVVSWNTMII---GYAQNMRLDEAFKL---FE 277

Query: 270 Q--ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           Q  E  L+   T    F   G    +  A   F ++  K+VV+WTA+I  +   G   + 
Sbjct: 278 QMPERELSSWNTMITGFIQNG---KLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEA 334

Query: 328 FRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
            ++F+ M   +  KP+E TFV VL  CS    + +G++   ++S+   ++  A+  S L 
Sbjct: 335 LKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTV-YQEVADVVSALI 393

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           ++  + G+++ A ++        RD V    ++ A   HG
Sbjct: 394 NMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHG 433


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 280/536 (52%), Gaps = 53/536 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G  KEA +LFDEMS+ + VS   +++ +++N  + +A  +F  MPE  RN+V+
Sbjct: 55  VSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE--RNVVS 112

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
            +AM+ GY++ G V EA  +F  + E N  SWT +  G     ++D+ R+L+D MP+K  
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV 172

Query: 119 ---------------------------LKNVVSWTTVVLGCAHNGLI-----------AK 140
                                       +NVV+WTT++ G   N  +            K
Sbjct: 173 VASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK 232

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            EV SWT+M  G   +   + A E+F  MP K ++A NAMI  + + G +++A  +F+LM
Sbjct: 233 TEV-SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLM 291

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NM 257
             R+  TW  MI  Y R G E  A+ L   M +    P+  +  SIL+ C  +       
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGR 351

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             HA  +R  F+ +  +       YV        ++  A+L F+R  +KD++ W ++I  
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCG-----ELVKAKLVFDRFSSKDIIMWNSIISG 406

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y++HG G +  ++F  M  SGT P+++T + +L+ CS+AG +E+G + F  M   +   P
Sbjct: 407 YASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTP 466

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
             EHYSC  D+L RAGQV +AM ++  M   + D  V GALLGAC+ H  + +A+   ++
Sbjct: 467 TVEHYSCTVDMLGRAGQVDKAMELIESMTI-KPDATVWGALLGACKTHSRLDLAEVAAKK 525

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
           L E +P ++G YVL ++++A+R +W + A VRK M    V K    S IEV  K H
Sbjct: 526 LFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVH 581



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 78/409 (19%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           + G+++EARK FD +    + SW S++SGYF      E R+LFD M    +NVVSW    
Sbjct: 29  RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM--SERNVVSW---- 82

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
                NGL+            +G  +N M   AR  F  MP +++V+W AM+  Y+  G 
Sbjct: 83  -----NGLV------------SGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGM 125

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM------------------ 231
           + +A  LF  MP+RN  +W  M      +G    A KL ++M                  
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185

Query: 232 ---------FQSRFMPNETTCTSILTS-------------CEGMLEN--------MLAHA 261
                    F      N  T T+++T               E M E         +L + 
Sbjct: 186 GRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYT 245

Query: 262 LAIRL----GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           L+ R+     F +   +     C+ +   +G   +++ AR  F+ +E +D  +W  MI A
Sbjct: 246 LSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKA 305

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y   G   +   LFA+M K G +P   + + +LS C+    ++ GR+    + R   F  
Sbjct: 306 YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ-FDD 364

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                S L  +  + G++ +A  V  +     +D ++  +++     HG
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLVFDRFS--SKDIIMWNSIISGYASHG 411



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +N AR  F+ L+ K + SW +++  Y ++G   +  +LF  M    ++ + +++ G++S 
Sbjct: 33  INEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM----SERNVVSWNGLVSG 88

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
                ++ + R  F LM      +     ++ +     + G V EA  +  +MP  ER+ 
Sbjct: 89  YIKNRMIVEARNVFELMP-----ERNVVSWTAMVKGYMQEGMVGEAESLFWRMP--ERNE 141

Query: 413 ----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
               V+ G L+   R+    ++ D +  + +    +  G       V  AR  +DE  +
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRE 200


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 276/498 (55%), Gaps = 24/498 (4%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A +LF+++  P+ VS  +M+  F R+  + +A  LF  MP   +N+V+ +AMI  YV+  
Sbjct: 223 AWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMP--CKNVVSWNAMIAAYVQDL 280

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
           ++DEA K+F E    +  SWT++I+GY +  ++DE R ++++MP K  +V + T ++ G 
Sbjct: 281 QIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYK--DVAAKTALMSGL 338

Query: 133 AHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
             NG I           K + I W +M  G  ++     A   F QMP K+ V+WN MI+
Sbjct: 339 IQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMIS 398

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y  AG M +A+E+F  M  RNV +WN++I  + +NG    A+K L LM Q    P+++T
Sbjct: 399 GYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQST 458

Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
               L+SC  +    +    H L ++ G+  +  ++      Y          V SA   
Sbjct: 459 FACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCG-----GVQSAEKV 513

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F+ +E  D++SW ++I  Y+ +G+  + F  F +M   GT PDE+TF+G+LS CSHAGL 
Sbjct: 514 FKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            +G   F  M   +  +P AEHYSCL D+L R G+++EA  +V  M   + +  + G+LL
Sbjct: 574 NQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKV-KANAGLWGSLL 632

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
            ACR+H ++ +      RL+EL+P ++  Y+  +N+HA  G W++  ++R  M ERR  K
Sbjct: 633 AACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGK 692

Query: 479 VASFSQIEVKGKDHTLLA 496
           +   S IEV+ +    ++
Sbjct: 693 LPGCSWIEVQNQIQNFVS 710



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 192/421 (45%), Gaps = 77/421 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G  GK+ EA ++F  +   +  +  SM+TVF +N  +  A  LF  M  SQRN+V+ + 
Sbjct: 27  LGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM--SQRNLVSWNT 84

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MI GY+    V+EA K+FD + E + +SW  +I+ Y +   +++ R LF+ +P       
Sbjct: 85  MIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELVP------- 137

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                           KL+   W  M  G  +      A + F +MP KD+V++N+M+  
Sbjct: 138 ---------------DKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAG 182

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G M  A + F  M +RNV +WN M+  +  N   G+A +L    F+    PN  + 
Sbjct: 183 YTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWEL----FEKIPDPNAVSW 238

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
            ++L                   GF +   +                     AR  F+R+
Sbjct: 239 VTMLC------------------GFARHGKIV-------------------EARKLFDRM 261

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             K+VVSW AMI AY       +  +LF    K     D +++  +++     G +++ R
Sbjct: 262 PCKNVVSWNAMIAAYVQDLQIDEAVKLF----KETPYKDCVSWTTMINGYVRVGKLDEAR 317

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GAC 422
           + +N M     +K  A   + ++ +++  G++ EA +V S++  ++RD +   +++ G C
Sbjct: 318 EVYNQMP----YKDVAAKTALMSGLIQN-GRIDEASQVFSQL--NKRDAICWNSMIAGYC 370

Query: 423 R 423
           +
Sbjct: 371 Q 371


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 284/498 (57%), Gaps = 28/498 (5%)

Query: 8   GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G ++EA KLFD   ++ + V+  +M+  +++ + + +AE LF  MP   RN+V+ + M+D
Sbjct: 46  GMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMP--LRNVVSWNTMVD 103

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + G   +A  +F  + E NV SW ++I+   +  ++++ +RLFD+M  K ++VVSWT
Sbjct: 104 GYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQM--KDRDVVSWT 161

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T+V G A NG +              V+SW  M TG  +N     A + F +MP +D+ +
Sbjct: 162 TMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPS 221

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL-LNLMFQSR 235
           WN MIT ++  G + +A +LF  M ++NV TW AM+  Y ++G    A+++ + ++  + 
Sbjct: 222 WNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNE 281

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PN  T  ++L +C    G+ E    H +  +  F+  T     C    +   +    +
Sbjct: 282 LKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDST-----CVVSALINMYSKCGE 336

Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           +++AR  F+   L  +D++SW  MI AY++HG+G +   LF  M + G   +++TFVG+L
Sbjct: 337 LHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLL 396

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CSH GLVE+G K F+ + +    + R +HY+CL D+  RAG++KEA  ++  +   E 
Sbjct: 397 TACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGL-GEEV 455

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
              V GALL  C +HG+  +   + E++++++P ++G Y L +N++A+ G+W E A VR 
Sbjct: 456 PLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRM 515

Query: 471 KM-ERRVKKVASFSQIEV 487
           +M +  +KK    S IEV
Sbjct: 516 RMKDMGLKKQPGCSWIEV 533



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           +++ AR  FE +  +D+  WT MI  Y   G   +  +LF R      K + +T+  +++
Sbjct: 16  EIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRW---DAKKNVVTWTAMVN 72

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
                  V++  + F  M            ++ + D   R G  ++A+ +  +MP  ER+
Sbjct: 73  GYIKFNQVKEAERLFYEMPLR-----NVVSWNTMVDGYARNGLTQQALDLFRRMP--ERN 125

Query: 412 HV----VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            V    ++ AL+   R+    R+ D + +R +    +       +  V  AR  +D+ 
Sbjct: 126 VVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQM 183


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 169/519 (32%), Positives = 281/519 (54%), Gaps = 37/519 (7%)

Query: 9   KVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAES 62
           K+ EA +L+++M Q    P+ V+  S++        L +   +   + E   + +++  +
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVAN 297

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA-----RQVDEGRRLFDRMPL 117
           A+I  Y K   V EAR++FD + + +V SW+++I+GY ++       +DE  +L +RM  
Sbjct: 298 ALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRR 357

Query: 118 K--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG--LERNAMTKL------------ 161
           +    N V++ +++  C  +G + +   I       G  L+R+  T +            
Sbjct: 358 EGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYE 417

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A + F +M NK++VAW + ++ Y+  G+++ A ++F+ MP RNV +WN MI  YA+NG  
Sbjct: 418 AEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDI 477

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKC 278
               +LL+ M    F P+  T  +IL +C    G+    L HA A++LG E +T +    
Sbjct: 478 VKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSL 537

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          V  AR  F+++  +D V+W AM+  Y  HG G +   LF RMLK  
Sbjct: 538 IGMYSKCG-----QVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKER 592

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             P+EIT   V+S CS AGLV++GR+ F +M   +   PR +HY C+ D+L RAG+++EA
Sbjct: 593 VSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEA 652

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
              +  MP  E D  V  ALLGAC+ H +V++A+     ++EL+PS +  Y+  +N++A 
Sbjct: 653 EEFIQSMPC-EPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQ 711

Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            G WD+  +VR+ M+ R +KK    S IE+ G+ HT +A
Sbjct: 712 AGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVA 750



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 206/491 (41%), Gaps = 93/491 (18%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------------- 54
           V  A ++F  M+  D V+ +SMI  +  N+   KA   F  M ++               
Sbjct: 107 VASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKA 166

Query: 55  ----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                 + ++   +A+I  Y K G +  A +VF ++ E NV SW
Sbjct: 167 CNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSW 226

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           T++I    + R+++E   L+++M       N V++ +++  C     + +   I      
Sbjct: 227 TAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            GLE                  D++  NA+IT Y    ++ +A E+F+ M +R+V +W+A
Sbjct: 287 RGLE-----------------TDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 211 MIDRYARNGPEGA-----AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN-MLAHAL 262
           MI  YA++G +         +LL  M +    PN+ T  SIL +C   G LE     HA 
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 263 AIRLGFEQETSLTY-------KCTCHY--------------VFWDWGFQL-----DVNSA 296
             ++GFE + SL         KC   Y              V W     +     D++SA
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSA 449

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F  +  ++VVSW  MI  Y+ +G   +VF L + M   G +PD +T + +L  C   
Sbjct: 450 EKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGAL 509

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             +E+G K  +  +   G +      + L  +  + GQV EA  V  KM    RD V   
Sbjct: 510 AGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS--NRDTVAWN 566

Query: 417 ALLGACRLHGD 427
           A+L     HGD
Sbjct: 567 AMLAGYGQHGD 577



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 180/390 (46%), Gaps = 52/390 (13%)

Query: 55  QRNIVAES----AMIDGYVKAGRVDEAR---KVFDEI-YEGNVYSWTSLISGYFKARQVD 106
           QR ++  S     +I+   KA R ++ +   K  DE+  E ++Y   SLI+ Y K   V 
Sbjct: 49  QRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVA 108

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT-----KL 161
              ++F RM   L++VV+W++++   A N   AK            +E N +T     K 
Sbjct: 109 SAEQVFRRMT--LRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKA 166

Query: 162 AREYFVQMPNK-------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
              Y +    +             D+    A+IT Y   G ++ A E+F+ M +RNV +W
Sbjct: 167 CNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSW 226

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIR 265
            A+I   A++     A +L   M Q+   PN  T  S+L SC   E +      H+    
Sbjct: 227 TAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286

Query: 266 LGFEQE-----TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
            G E +       +T  C C+           V  AR  F+R+  +DV+SW+AMI  Y+ 
Sbjct: 287 RGLETDMIVANALITMYCKCN----------SVQEAREIFDRMSKRDVISWSAMIAGYAQ 336

Query: 321 HGHG-----FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            G+       +VF+L  RM + G  P+++TF+ +L  C+  G +E+GR+    +S+  GF
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV-GF 395

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +      + + ++  + G + EA +V SKM
Sbjct: 396 ELDRSLQTAIFNMYAKCGSIYEAEQVFSKM 425



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI   N++I  Y    ++A A ++F  M  R+V TW++MI  YA N     A      M 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 233 QSRFMPNETTCTSILTSCEG--MLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            +   PN  T  SIL +C    +LE     H +   +G E + ++       Y       
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCG--- 206

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +++ A   F ++  ++VVSWTA+I A + H    + F L+ +ML++G  P+ +TFV +
Sbjct: 207 --EISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSL 264

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ C+    + +GR+  + +S   G +      + L  +  +   V+EA  +  +M   +
Sbjct: 265 LNSCNTPEALNRGRRIHSHISE-RGLETDMIVANALITMYCKCNSVQEAREIFDRMS--K 321

Query: 410 RDHVVLGALLGA 421
           RD +   A++  
Sbjct: 322 RDVISWSAMIAG 333



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQ 270
           R  + G    A++LL ++ Q   + N  T   ++  C       +  + H     LG E 
Sbjct: 30  RLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI 89

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           +  L       Y  ++     DV SA   F R+  +DVV+W++MI AY+ + H  + F  
Sbjct: 90  DIYLGNSLINFYSKFE-----DVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 144

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RM  +  +P+ ITF+ +L  C++  ++EKGRK   ++ +A G +      + L  +  
Sbjct: 145 FERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIV-KAMGMETDVAVATALITMYS 203

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           + G++  A  V  KM   ER+ V   A++ A   H  +  A  + E++++   S +    
Sbjct: 204 KCGEISVACEVFHKMT--ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTF 261

Query: 451 LS 452
           +S
Sbjct: 262 VS 263



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G+V EA  +FD+MS  D V+  +M+  + ++ D  +A  LF+ M + +   N +  +A+I
Sbjct: 545 GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604

Query: 66  DGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
               +AG V E R++F  + E          +  ++    +A ++ E       MP +  
Sbjct: 605 SACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCE-P 663

Query: 121 NVVSWTTVVLGC-AHNGL 137
           ++  W  ++  C +HN +
Sbjct: 664 DISVWHALLGACKSHNNV 681


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/518 (32%), Positives = 265/518 (51%), Gaps = 64/518 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G++  A K FDEM   D VS   M+  ++R  D+  A  LF  +P    N+V+   +++
Sbjct: 180 NGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSP--NVVSWVTLLN 237

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +AGR+ EAR++FD I + NV +W  ++SGY +   ++E  +LF  MP K  N +SWT
Sbjct: 238 GYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDK--NSISWT 295

Query: 127 TVVLGCAHNG-------LIAKL----------------------------------EVIS 145
           T++      G       L+ K+                                  + + 
Sbjct: 296 TMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVC 355

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W TM +G     M   A   F QMPNKD+V+WN MI  Y   G M +A  +F  M QRN 
Sbjct: 356 WNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNT 415

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--------LENM 257
            +WN++I  + +NG    A++   LM +     + +T    L++C  +          ++
Sbjct: 416 VSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSL 475

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           LA +  I   F     ++    C  +            AR  F+ + A D+VSW A+I  
Sbjct: 476 LARSGYIGDSFAGNALISAYAKCGRIL----------EARQVFDEMPAPDIVSWNALIDG 525

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y+++GHG +   +F  M  +  +PDE+TFVGVLS CSHAGL+++G   FN M++ Y  +P
Sbjct: 526 YASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRP 585

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
            AEHY+C+ D+L R+G++ EA  ++  M   + +  V GA+LGACR+H +  +A    E+
Sbjct: 586 VAEHYACMVDLLGRSGRLSEAFEIIQGMQV-QPNAGVWGAMLGACRVHKNHELAQLAAEK 644

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           L EL+P  +  YVL +N+ A  G+WDE   +R  ++ R
Sbjct: 645 LYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKER 682



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 185/406 (45%), Gaps = 58/406 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A +LFD M   + VS  +M++   R+  +  A  LF  +P  +RN V+ +AMI 
Sbjct: 24  SGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIP--RRNTVSWNAMIA 81

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
                GRV +AR +FD +   + +SWT ++S Y +A ++   R   DRMP   K    + 
Sbjct: 82  ACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGD-KCTACYN 140

Query: 127 TVVLGCAHNG----LIAKL------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G A +G     +A L      ++ISW ++  GL RN     A ++F +MP +D+V+
Sbjct: 141 AMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVS 200

Query: 177 WNAMITAYVDAGN-------------------------------MAQASELFNLMPQRNV 205
           WN M+  YV AG+                               + +A ELF+ +P RNV
Sbjct: 201 WNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNV 260

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
             WN M+  Y R      A KL   M     +   T  ++++    G L+   A  L  +
Sbjct: 261 AAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRG--GKLQE--AKDLLDK 316

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           + F+   S   K    + +        ++ ARL F+ LE +D V W  MI  Y + G   
Sbjct: 317 MPFD---SFAAKTALMHGYLQSKM---IDDARLIFDGLEVRDAVCWNTMISGYVHCGMLD 370

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           +   LF +M       D +++  +++  +H G + K    F  M++
Sbjct: 371 EAMVLFQQM----PNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQ 412



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 146/348 (41%), Gaps = 63/348 (18%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           ++G++  AR++FD +   N  S+ +++S   +  ++ + RRLFD +P   +N VSW  ++
Sbjct: 23  RSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIP--RRNTVSWNAMI 80

Query: 130 LGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWN 178
             C+ +G +A            +  SWT M +   R     LAR+   +MP +K    +N
Sbjct: 81  AACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYN 140

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           AMI+ Y   G    A  L   MP  ++ +WN+++    RNG    A+K  +       MP
Sbjct: 141 AMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDE------MP 194

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
                   + S   MLE        +R G                        DV+SA  
Sbjct: 195 ARD-----MVSWNLMLEGY------VRAG------------------------DVDSAAG 219

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F  + + +VVSW  ++  Y   G   +   LF R+         +   G L   SH   
Sbjct: 220 LFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLR-LSH--- 275

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +E+  K F  M         +  ++ +   L R G+++EA  ++ KMP
Sbjct: 276 MEEAYKLFTEMP-----DKNSISWTTMISALVRGGKLQEAKDLLDKMP 318


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 171/489 (34%), Positives = 261/489 (53%), Gaps = 39/489 (7%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV-KAGRVDEARKVFDEI 84
           +S   +IT  +R+ DL  A  +F +M  + +  V  ++M+ GY  + G++  AR++FD I
Sbjct: 6   ISSNRVITNHIRSGDLNSALRVFESM--TVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL--- 141
            E +++S+  +++ Y     V+  R  FD+MP+K  +  SW T++ G + NG++ +    
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVK--DTASWNTMISGFSQNGMMDQAREL 121

Query: 142 -------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                    +SW  M +G   +    LA++ F   P + +VAW AMIT ++  G +  A 
Sbjct: 122 FLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAE 181

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           + F  MP +N+ TWNAMI  Y  N      +KL   M +S F PN ++ +S+L  C  + 
Sbjct: 182 KYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLS 241

Query: 255 ENMLA---HAL----AIRLGFEQETSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
              L    H L     +       TSL +  C C           D+  A   F  +  K
Sbjct: 242 ALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCG----------DLEDAWKLFLVMPQK 291

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DVV+W AMI  Y+ HG G +   LF +M   G KPD ITFV VLS C+HAG V+ G + F
Sbjct: 292 DVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYF 351

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRL 424
           N M R YG + + +HY+C+ D+L R G++ EA+ ++ KMP  PH     + G LLGACR+
Sbjct: 352 NSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHS---AIFGTLLGACRI 408

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFS 483
           H ++ +A++  + L+ L P S+  YV  ANV+AA   WD  A VR+ M + +V K   +S
Sbjct: 409 HKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYS 468

Query: 484 QIEVKGKDH 492
            IEVK   H
Sbjct: 469 WIEVKSVVH 477



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A +LF+       V+  +MIT F++   +  AE  F  MP   +N+V  +AMI 
Sbjct: 143 SGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMP--MKNLVTWNAMIA 200

Query: 67  GYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           GY++  + +   K+F  + E     N  S +S++ G      +  G+++     L  K+ 
Sbjct: 201 GYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQ---LICKSP 257

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           VSW           + A   ++S    C  LE       A + F+ MP KD+V WNAMI+
Sbjct: 258 VSWN----------ITAGTSLLSMYCKCGDLED------AWKLFLVMPQKDVVTWNAMIS 301

Query: 183 AYVDAGNMAQASELFNLM 200
            Y   G   +A  LF+ M
Sbjct: 302 GYAQHGAGEKALYLFDKM 319



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 27/219 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           GK++ A K F+EM   + V+  +MI  ++ N        LF+ M ES  + N  + S+++
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            G      +   ++V   I +     N+ + TSL+S Y K   +++  +LF  MP   K+
Sbjct: 235 LGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP--QKD 292

Query: 122 VVSWTTVVLGCAHNG-------LIAKL-------EVISWTTMCTGLERNAMTKLAREYFV 167
           VV+W  ++ G A +G       L  K+       + I++  + +         L  EYF 
Sbjct: 293 VVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFN 352

Query: 168 QMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMP 201
            M  +  + A     T  VD     G + +A +L   MP
Sbjct: 353 SMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMP 391



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 42/165 (25%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA-RNGPEGAAMKLLN 229
           + ++++ N +IT ++ +G++  A  +F  M  +   TWN+M+  Y+ R G    A +L +
Sbjct: 2   SSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFD 61

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                R    +    +I+ +C   L N                                 
Sbjct: 62  -----RIPEPDIFSYNIMLAC--YLHNA-------------------------------- 82

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             DV SARL F+++  KD  SW  MI  +S +G   Q   LF  M
Sbjct: 83  --DVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 281/504 (55%), Gaps = 25/504 (4%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GKV  A KLFDEM+  D V+  SM++ + +N  L +++ALF +MP   RN+V+ +++I  
Sbjct: 43  GKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMP--LRNVVSWNSIIAA 100

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            V+   + +A +      E N  S+ ++ISG  +  ++ + +RLF+ MP    NVVS+T 
Sbjct: 101 CVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCP--NVVSYTA 158

Query: 128 VVLGCAH-NGLIAKLEV----------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           +V G A   G I +             +SW  M  GL  N + + A E FV+MP K+ VA
Sbjct: 159 MVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVA 218

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             AMIT +   G M  A +LF  +  R++ +WN ++  YA+NG    A+ L + M ++  
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGM 278

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P++ T  S+  +C  +    E   AHAL I+ GF+ + S+     C+ +         +
Sbjct: 279 QPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSV-----CNALITVHSKCGGI 333

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             + L F ++   D+VSW  +I A++ HG   +    F +M+    +PD ITF+ +LS C
Sbjct: 334 VDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSAC 393

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
             AG V +    F+LM   YG  PR+EHY+CL D++ RAGQ++ A +++++M P + D  
Sbjct: 394 CRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEM-PFKADSS 452

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           + GA+L AC +H +V + +    R++ L P +SGAYV+ +N++AA G+W +  ++R  M 
Sbjct: 453 IWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMK 512

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           E+ VKK  ++S +++  K H  + 
Sbjct: 513 EQGVKKQTAYSWLQIGNKTHYFVG 536



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 72/363 (19%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
             L R      AR+ F +M  KD+V WN+M++AY   G + ++  LF+ MP RNV +WN+
Sbjct: 37  VALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVVSWNS 96

Query: 211 MID------------RYARNGPEGAA---------------MKLLNLMFQSRFMPNETTC 243
           +I             RY    PE  A               MK    +F++   PN  + 
Sbjct: 97  IIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSY 156

Query: 244 TSILTS-----------------------------CEGMLENML---AHALAIRLGFEQE 271
           T+++                                 G++EN L   A  + +R+  + +
Sbjct: 157 TAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKND 216

Query: 272 TSLTYKCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
            + T   T        GF  +  +  AR  F+ +  +D+VSW  ++  Y+ +G G +   
Sbjct: 217 VARTAMIT--------GFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALN 268

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF++M+++G +PD++TFV V   C+    +E+G K   L+ + +GF       + L  + 
Sbjct: 269 LFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIK-HGFDSDLSVCNALITVH 327

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            + G + ++  V  ++     D V    ++ A   HG    A    ++++ +     G  
Sbjct: 328 SKCGGIVDSELVFGQIS--HPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGIT 385

Query: 450 VLS 452
            LS
Sbjct: 386 FLS 388


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 265/505 (52%), Gaps = 66/505 (13%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  VS  S++  ++R+  L  A  LF+ MPE  RN V+ + ++ G + AGRV+EAR++FD
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE--RNHVSYTVLLGGLLDAGRVNEARRLFD 167

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           E+ + +V +WT+++SGY +A ++ E R LFD MP                       K  
Sbjct: 168 EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-----------------------KRN 204

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V+SWT M +G  +N    LAR+ F  MP ++ V+W AM+  Y+ AG++  A+ELFN MP+
Sbjct: 205 VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264

Query: 203 -------------------------------RNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                                          R+  TW+AMI  Y +N     A+     M
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREM 324

Query: 232 FQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN  +  SILT C  +         HA  +R  F+ +          Y+     
Sbjct: 325 LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-- 382

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              +++ A+  F   E KD+V W +MI  Y+ HG G Q   +F  M  +G  PD IT++G
Sbjct: 383 ---NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            L+ CS+ G V++GR+ FN M+     +P AEHYSC+ D+L R+G V+EA  ++  MP  
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV- 498

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D V+ GAL+GACR+H +  +A++  ++L+EL+P ++G YVL ++++ + G W++ +++
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKM 558

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDH 492
           RK +  R + K    S IE   + H
Sbjct: 559 RKFISSRNLNKSPGCSWIEYDKRVH 583



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 194/413 (46%), Gaps = 41/413 (9%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I    R  ++  A A F AMP   R   + +A++ GY +    D A  +F  +   ++ S
Sbjct: 24  IAHLARAGNIEGARAAFEAMP--LRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 92  WTSLISGYFKARQ-VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------K 140
           + +LISG    RQ + +       +P    +VVS+T+++ G   +GL+A          +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +S+T +  GL        AR  F +MP++D+VAW AM++ Y  AG + +A  LF+ M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P+RNV +W AMI  YA+NG    A KL  +M +     NE + T++L             
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVG----------- 245

Query: 261 ALAIRLGFEQETSLTYK-------CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
              I+ G  ++ +  +          C+ +   +G +  V++A+  FE++  +D  +W+A
Sbjct: 246 --YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI AY  +    +    F  ML  G +P+  + + +L+ C+   +++ GR+    M R  
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC- 362

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            F       S L  +  + G + +A RV     P  +D V+  +++     HG
Sbjct: 363 SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEP--KDIVMWNSMITGYAQHG 413



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 53/293 (18%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+V EA +LFDEM   D V+  +M++ + +   + +A ALF  MP  +RN+V+ +AMI 
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMIS 213

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + G V+ ARK+F+ + E N  SWT+++ GY +A  V++   LF+ MP     V +  
Sbjct: 214 GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP--EHPVAACN 271

Query: 127 TVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQM------P 170
            +++G    G++   + +          +W+ M    E+N     A   F +M      P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 171 N---------------------------------KDIVAWNAMITAYVDAGNMAQASELF 197
           N                                  D+ A +A+IT Y+  GN+ +A  +F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +    +++  WN+MI  YA++G    A+ + + M  +   P+  T    LT+C
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 280/541 (51%), Gaps = 57/541 (10%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
                G+V +A KLFD   + D VS  ++++ + R   L  A +LF    +++RN+V  +
Sbjct: 49  DLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFD-RSDARRNVVTWT 107

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---- 118
           A++ GY +AG VDEA  +F  + + NV SW +++  Y  A +  +   LFDRMP++    
Sbjct: 108 ALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGS 167

Query: 119 -------------------------LKNVVSWTTVVLGCAHNGLI--AKL--------EV 143
                                     ++V++WTT+V G A +G +  A+L         V
Sbjct: 168 WNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNV 227

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +SW  M +G  RN     A + F +MP++DI + N MIT ++   ++ +A +LF+ MP+R
Sbjct: 228 VSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPER 287

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-------CTSILTSCEGMLEN 256
           NV TW  M++ Y +      ++ L   M  S   PN+ T       C+ + T CEG    
Sbjct: 288 NVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQ-- 345

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H +  +  F+ +T +        V+   G   +V  AR  F+    KD++SW  +I 
Sbjct: 346 --VHQMICKTAFQVDTFV--GSALMNVYAKCG---EVGLARKLFDLSREKDLISWNGIIA 398

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           AY++HG G +   L+ +M  +G +P+++T+V +LS CSH+GLV++G K F  M       
Sbjct: 399 AYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIA 458

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
            R EHY+CL D+  RAG++ +A R++  +        V  ALLG C  HG+  + +    
Sbjct: 459 VRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAAR 518

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
            LI+ +P ++G Y L +N++A+ G+W E A++R +M  R +KK    S IEV  K H  +
Sbjct: 519 NLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFV 578

Query: 496 A 496
           A
Sbjct: 579 A 579



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 113/280 (40%), Gaps = 70/280 (25%)

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
           T+   GLER            Q PN+ IV   A       AG +  A +LF+  P+R+V 
Sbjct: 31  TSAAVGLER-----------AQDPNRLIVDLAA-------AGRVWDARKLFDGTPERDVV 72

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           +W A++  YAR G    A  L +   +S    N  T T++L+                R 
Sbjct: 73  SWTALVSAYARRGMLRDARSLFD---RSDARRNVVTWTALLSGYA-------------RA 116

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G                         V+ A + F+R+  ++VVSW  M+ AY+  G    
Sbjct: 117 GL------------------------VDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGD 152

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF RM       D  ++  +L+    +G V+K R+ F  M      +     ++ + 
Sbjct: 153 ACALFDRM----PVRDAGSWNILLAMLVRSGSVDKARELFGRMP-----ERDVMAWTTMV 203

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRLH 425
           D + R+G V EA  +   MP  ER+ V   A++ G  R H
Sbjct: 204 DGVARSGNVDEARLLFDSMP--ERNVVSWNAMISGYTRNH 241


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 265/505 (52%), Gaps = 66/505 (13%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  VS  S++  ++R+  L  A  LF+ MPE  RN V+ + ++ G + AGRV+EAR++FD
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE--RNHVSYTVLLGGLLDAGRVNEARRLFD 167

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           E+ + +V +WT+++SGY +A ++ E R LFD MP                       K  
Sbjct: 168 EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-----------------------KRN 204

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V+SWT M +G  +N    LAR+ F  MP ++ V+W AM+  Y+ AG++  A+ELFN MP+
Sbjct: 205 VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264

Query: 203 -------------------------------RNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                                          R+  TW+AMI  Y +N     A+     M
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREM 324

Query: 232 FQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN  +  SILT C  +         HA  +R  F+ +          Y+     
Sbjct: 325 LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-- 382

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              +++ A+  F   E KD+V W +MI  Y+ HG G Q   +F  M  +G  PD IT++G
Sbjct: 383 ---NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            L+ CS+ G V++GR+ FN M+     +P AEHYSC+ D+L R+G V+EA  ++  MP  
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV- 498

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D V+ GAL+GACR+H +  +A++  ++L+EL+P ++G YVL ++++ + G W++ +++
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKM 558

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDH 492
           RK +  R + K    S IE   + H
Sbjct: 559 RKFISSRNLNKSPGCSWIEYDKRVH 583



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 27/406 (6%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I    R  ++  A A F AMP   R   + +A++ GY +    D A  +F  +   ++ S
Sbjct: 24  IAHLARAGNIEGARAAFEAMP--LRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 92  WTSLISGYFKARQ-VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------K 140
           + +LISG    RQ + +       +P    +VVS+T+++ G   +GL+A          +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +S+T +  GL        AR  F +MP++D+VAW AM++ Y  AG + +A  LF+ M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P+RNV +W AMI  YA+NG    A KL  +M +     NE + T++L    G ++     
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLV---GYIQAGHVE 253

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
             A       E  +     C+ +   +G +  V++A+  FE++  +D  +W+AMI AY  
Sbjct: 254 DAAELFNAMPEHPVA---ACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +    +    F  ML  G +P+  + + +L+ C+   +++ GR+    M R   F     
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFDMDVF 369

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             S L  +  + G + +A RV     P  +D V+  +++     HG
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEP--KDIVMWNSMITGYAQHG 413



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 53/293 (18%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+V EA +LFDEM   D V+  +M++ + +   + +A ALF  MP  +RN+V+ +AMI 
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMIS 213

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + G V+ ARK+F+ + E N  SWT+++ GY +A  V++   LF+ MP     V +  
Sbjct: 214 GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP--EHPVAACN 271

Query: 127 TVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQM------P 170
            +++G    G++   + +          +W+ M    E+N     A   F +M      P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 171 N---------------------------------KDIVAWNAMITAYVDAGNMAQASELF 197
           N                                  D+ A +A+IT Y+  GN+ +A  +F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +    +++  WN+MI  YA++G    A+ + + M  +   P+  T    LT+C
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 269/504 (53%), Gaps = 24/504 (4%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A   F ++  P+ VS  +M++ F     + +A  LF  MP   +N+V+ +AMI 
Sbjct: 215 VGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP--TKNLVSWNAMIG 272

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+  ++D+A K+F E+ E +  SWT++I+GY +  ++ + R + + MP K  N+ + T
Sbjct: 273 AYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYK--NIAAQT 330

Query: 127 TVVLGCAHNG-------LIAKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G   +G       + +++ V   + W +M TG      T  A   F +M  KD+V+
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVS 390

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI AY  AG M +A E+FN M +RNV +WN++I  Y +NG    A+    LM Q   
Sbjct: 391 WNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGE 450

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P++TT    L +   +      +  H L I+ GF  +  +       Y          V
Sbjct: 451 KPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMY-----AKSGRV 505

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A   F  ++ KDVVSW ++I  Y+ +G G +   LF  M   G  PDE+TF G+LS C
Sbjct: 506 PEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H G V++G   F  M+  Y  KP++EHY+C+ ++L R G+++EA+ +V  M        
Sbjct: 566 NHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK- 624

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           + GALL ACR+H ++ +A Y  ERL+ L+P ++  YVL +N+HA  G WD   +VR  M 
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           E + +K    S IE+  + H  L+
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCFLS 708



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 224/519 (43%), Gaps = 101/519 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           SQ G +G+++EA  +F +M++ + V+  SMI+ + +N  +  A  LF  MP  QRN+V+ 
Sbjct: 23  SQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMP--QRNLVSW 80

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT---------------------------- 93
           ++MI GY+    V++A ++FD +++ ++YSWT                            
Sbjct: 81  NSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 94  ----SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------------- 136
               +LI+GY K R   E ++LFD M   +KNVVSW +++ G   NG             
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEML--VKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198

Query: 137 ----------------------------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
                                        I    V+SW TM +G         AR  F +
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K++V+WNAMI AYV    +  A +LF  MP+++  +W AMI+ Y R G    A ++L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC-------- 280
           NLM               L S      N +   +++R      + +T    C        
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378

Query: 281 --------HYVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
                     V W+     +     ++ A   F  ++ ++VVSW ++I  Y  +G  F+ 
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
              F  M + G KPD+ T V  L   ++   +  G +  +L  +  GF       + +  
Sbjct: 439 LNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKT-GFGNDLFVKNAILT 497

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  ++G+V EA  V +++    +D V   +L+    L+G
Sbjct: 498 MYAKSGRVPEAENVFAEI--KXKDVVSWNSLIAGYALNG 534



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 174/413 (42%), Gaps = 96/413 (23%)

Query: 49  RAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEG 108
           +++ E    +  ++  I    ++GR++EA  VF ++ E N+ ++ S+IS Y K  ++   
Sbjct: 6   KSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANA 65

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGLERNAM 158
           R LFD MP   +N+VSW +++ G  HN L+           K ++ SWT M T   R   
Sbjct: 66  RELFDLMP--QRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGE 123

Query: 159 TKLAREYFVQMPN--------------------------------KDIVAWNAMITAYVD 186
            + ARE F  +P+                                K++V+WN++++ Y  
Sbjct: 124 LEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTK 183

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G M    + F  M +RNV +WN M+D Y   G   +A     + F+    PN  +  ++
Sbjct: 184 NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAW----MFFKKIPTPNVVSWVTM 239

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           L+                  GF     +T                    AR  F  +  K
Sbjct: 240 LS------------------GFAHYGRMT-------------------EARNLFNEMPTK 262

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           ++VSW AMI AY         ++LF  M     + D +++  +++     G + + R+  
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           NLM     +K  A   + +   L ++G++ EA  + S++    RD V   +++
Sbjct: 319 NLMP----YKNIAAQTAMINGYL-QSGRMDEANEIFSQISV--RDSVCWNSMI 364



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 155/368 (42%), Gaps = 69/368 (18%)

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           L R+   + A   F++M  ++IV +N+MI+AY   G +A A ELF+LMPQRN+ +WN+MI
Sbjct: 25  LGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMI 84

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE 269
             Y  N     A +L + MF+      +    +++ +C    G LE   A  L   L  +
Sbjct: 85  AGYLHNELVEDAARLFDRMFKR-----DIYSWTLMITCYTRIGELEK--ARELFNLLPDK 137

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQ 326
           Q+T         Y       +     A+  F+ +  K+VVSW +++  Y+ +G    G Q
Sbjct: 138 QDTVCRNALIAGY-----AKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQ 192

Query: 327 VFRLFAR------------------------MLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
            F                               K    P+ +++V +LS  +H G + + 
Sbjct: 193 FFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEA 252

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           R  FN M            ++ +     R  Q+ +A ++  +MP  E+D V   A+    
Sbjct: 253 RNLFNEMP-----TKNLVSWNAMIGAYVRENQIDDAYKLFMEMP--EKDSVSWTAM---- 301

Query: 423 RLHGDVRMADYIGER-LIELQPSSS-GAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480
            ++G VR+   +  R ++ L P  +  A     N +   G  DE  ++            
Sbjct: 302 -INGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI------------ 348

Query: 481 SFSQIEVK 488
            FSQI V+
Sbjct: 349 -FSQISVR 355


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 269/504 (53%), Gaps = 24/504 (4%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A   F ++  P+ VS  +M++ F     + +A  LF  MP   +N+V+ +AMI 
Sbjct: 215 VGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP--TKNLVSWNAMIG 272

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+  ++D+A K+F E+ E +  SWT++I+GY +  ++ + R + + MP K  N+ + T
Sbjct: 273 AYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYK--NIAAQT 330

Query: 127 TVVLGCAHNG-------LIAKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G   +G       + +++ V   + W +M TG      T  A   F +M  KD+V+
Sbjct: 331 AMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVS 390

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI AY  AG M +A E+FN M +RNV +WN++I  Y +NG    A+    LM Q   
Sbjct: 391 WNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGE 450

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P++TT    L +   +      +  H L I+ GF  +  +       Y          V
Sbjct: 451 KPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMY-----AKSGRV 505

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A   F  ++ KDVVSW ++I  Y+ +G G +   LF  M   G  PDE+TF G+LS C
Sbjct: 506 PEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H G V++G   F  M+  Y  KP++EHY+C+ ++L R G+++EA+ +V  M        
Sbjct: 566 NHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAK- 624

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           + GALL ACR+H ++ +A Y  ERL+ L+P ++  YVL +N+HA  G WD   +VR  M 
Sbjct: 625 IWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMK 684

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           E + +K    S IE+  + H  L+
Sbjct: 685 ENKAEKQPGCSWIEIDNQLHCFLS 708



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 224/519 (43%), Gaps = 101/519 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           SQ G +G+++EA  +F +M++ + V+  SMI+ + +N  +  A  LF  MP  QRN+V+ 
Sbjct: 23  SQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMP--QRNLVSW 80

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT---------------------------- 93
           ++MI GY+    V++A ++FD +++ ++YSWT                            
Sbjct: 81  NSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDT 140

Query: 94  ----SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------------- 136
               +LI+GY K R   E ++LFD M   +KNVVSW +++ G   NG             
Sbjct: 141 VCRNALIAGYAKKRLFREAKKLFDEML--VKNVVSWNSILSGYTKNGKMQLGLQFFEAMG 198

Query: 137 ----------------------------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
                                        I    V+SW TM +G         AR  F +
Sbjct: 199 ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNE 258

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K++V+WNAMI AYV    +  A +LF  MP+++  +W AMI+ Y R G    A ++L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC-------- 280
           NLM               L S      N +   +++R      + +T    C        
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378

Query: 281 --------HYVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
                     V W+     +     ++ A   F  ++ ++VVSW ++I  Y  +G  F+ 
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
              F  M + G KPD+ T V  L   ++   +  G +  +L  +  GF       + +  
Sbjct: 439 LNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKT-GFGNDLFVKNAILT 497

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  ++G+V EA  V +++    +D V   +L+    L+G
Sbjct: 498 MYAKSGRVPEAENVFAEI--KNKDVVSWNSLIAGYALNG 534



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 174/413 (42%), Gaps = 96/413 (23%)

Query: 49  RAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEG 108
           +++ E    +  ++  I    ++GR++EA  VF ++ E N+ ++ S+IS Y K  ++   
Sbjct: 6   KSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANA 65

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGLERNAM 158
           R LFD MP   +N+VSW +++ G  HN L+           K ++ SWT M T   R   
Sbjct: 66  RELFDLMP--QRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGE 123

Query: 159 TKLAREYFVQMPN--------------------------------KDIVAWNAMITAYVD 186
            + ARE F  +P+                                K++V+WN++++ Y  
Sbjct: 124 LEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTK 183

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G M    + F  M +RNV +WN M+D Y   G   +A     + F+    PN  +  ++
Sbjct: 184 NGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAW----MFFKKIPTPNVVSWVTM 239

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           L+                  GF     +T                    AR  F  +  K
Sbjct: 240 LS------------------GFAHYGRMT-------------------EARNLFNEMPTK 262

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           ++VSW AMI AY         ++LF  M     + D +++  +++     G + + R+  
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           NLM     +K  A   + +   L ++G++ EA  + S++    RD V   +++
Sbjct: 319 NLMP----YKNIAAQTAMINGYL-QSGRMDEANEIFSQISV--RDSVCWNSMI 364



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 155/368 (42%), Gaps = 69/368 (18%)

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           L R+   + A   F+QM  ++IV +N+MI+AY   G +A A ELF+LMPQRN+ +WN+MI
Sbjct: 25  LGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMI 84

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE 269
             Y  N     A +L + MF+      +    +++ +C    G LE   A  L   L  +
Sbjct: 85  AGYLHNELVEDAARLFDRMFKR-----DIYSWTLMITCYTRIGELEK--ARELFNLLPDK 137

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQ 326
           Q+T         Y       +     A+  F+ +  K+VVSW +++  Y+ +G    G Q
Sbjct: 138 QDTVCRNALIAGY-----AKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQ 192

Query: 327 VFRLFAR------------------------MLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
            F                               K    P+ +++V +LS  +H G + + 
Sbjct: 193 FFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEA 252

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           R  FN M            ++ +     R  Q+ +A ++  +MP  E+D V   A+    
Sbjct: 253 RNLFNEMP-----TKNLVSWNAMIGAYVRENQIDDAYKLFMEMP--EKDSVSWTAM---- 301

Query: 423 RLHGDVRMADYIGER-LIELQPSSS-GAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480
            ++G VR+   +  R ++ L P  +  A     N +   G  DE  ++            
Sbjct: 302 -INGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI------------ 348

Query: 481 SFSQIEVK 488
            FSQI V+
Sbjct: 349 -FSQISVR 355


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/514 (32%), Positives = 281/514 (54%), Gaps = 30/514 (5%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDP----VSCASMITVFLRNHDLPKAEALFRAMPESQR 56
            S +   G +++A +LFD   +PD     V+  ++++ + R   + +AEALF+ MP  QR
Sbjct: 80  VSAYARRGMLRDARELFD---RPDARRNVVTWTALLSGYARARLVDEAEALFQRMP--QR 134

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+V+ + M++ Y  AGRV +A  +FD +   +  SW  L++   ++  VD+ R LF RMP
Sbjct: 135 NVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMP 194

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYF 166
            +  +V++WTT+V G A +G + +            V+SW  M +G  RN     A + F
Sbjct: 195 ER--DVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLF 252

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++MP +DI + N M+T ++   ++ +A ELF+ MP+RNV TW  M++ Y +      A+ 
Sbjct: 253 MKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALG 312

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
           L + M  +   PN+ T    L +C     + E    H +  +  F+ +  +  +     V
Sbjct: 313 LFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFV--ESALMNV 370

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +   G   ++  AR  F+    KD++SW  +I AY++HG G +   L+ +M ++G +P++
Sbjct: 371 YAKCG---EIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPND 427

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +T+V +LS CSH+GLV++G K F  M        R EHY+CL D+  RAG++ +A R++ 
Sbjct: 428 VTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIH 487

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            +        V  ALLG C  HG+  + +     L++ +P ++G Y L +N++A+ G+W 
Sbjct: 488 YLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWK 547

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           E A++R +M  R +KK    S IEV  K H  +A
Sbjct: 548 EAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVA 581



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 52/249 (20%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I     AG +  A +LF+  P  +V +W A++  YAR G    A +L +     R  
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARR-- 103

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            N  T T++L+           +A A RL                          V+ A 
Sbjct: 104 -NVVTWTALLS----------GYARA-RL--------------------------VDEAE 125

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+R+  ++VVSW  M+ AY+  G       LF RM       D  ++  +L+    +G
Sbjct: 126 ALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM----PVRDAGSWNILLATLVRSG 181

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            V+K R+ F  M      +     ++ + D + R+G+V EA  +   MP  ER+ V   A
Sbjct: 182 SVDKARELFGRMP-----ERDVMAWTTMVDGVARSGKVDEARVLFDSMP--ERNVVSWNA 234

Query: 418 LL-GACRLH 425
           ++ G  R H
Sbjct: 235 MISGYTRNH 243


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 163/505 (32%), Positives = 277/505 (54%), Gaps = 26/505 (5%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A +LF+++  P+ VS  +M+    +   + +A  LF  MP   +N+V+ +AMI 
Sbjct: 217 SGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPS--KNVVSWNAMIA 274

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+  +VDEA K+F ++   +  SWT++I+GY +  ++DE R+++++MP K  ++ + T
Sbjct: 275 TYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCK--DITAQT 332

Query: 127 TVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G   NG I + +          V+ W +M  G  R+     A   F QMP K+ V+
Sbjct: 333 ALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVS 392

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI+ Y  AG M +A+E+F  M ++N+ +WN++I  + +N     A+K L +M +   
Sbjct: 393 WNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGK 452

Query: 237 MPNETTCTSILTSCEGM----LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            P+++T    L++C  +    + N L H   ++ G+  +  +       Y          
Sbjct: 453 KPDQSTFACTLSACANLAALQVGNQL-HEYILKSGYMNDLFVGNALIAMYAKCG-----R 506

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V SA   F  +E  D++SW ++I  Y+ +G+  + F+ F +M      PDE+TF+G+LS 
Sbjct: 507 VQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSA 566

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGL  +G   F  M   +  +P AEHYSCL D+L R G+++EA   V  M   + + 
Sbjct: 567 CSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKV-KANA 625

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            + G+LLGACR+H ++ +  +  ERL EL+P ++  Y+  +N+HA  G W+E  +VR  M
Sbjct: 626 GLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLM 685

Query: 473 E-RRVKKVASFSQIEVKGKDHTLLA 496
             +R  K    S IEV+ +    L+
Sbjct: 686 RGKRAGKQPGCSWIEVQNQIQHFLS 710



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 186/381 (48%), Gaps = 43/381 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
             ++++A +LFD+MS  + VS  +MI  +L N+ + +A  LF  MPE  R+  + + MI 
Sbjct: 61  NARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPE--RDNFSWALMIT 118

Query: 67  GYVKAGRVDEARKVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
            Y + G++++AR++ + + +  +   W ++I+GY K  Q ++ +++F++MP   K++VS+
Sbjct: 119 CYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMP--AKDLVSY 176

Query: 126 TTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            +++ G   NG           + +  V+SW  M  G  ++     A + F ++PN + V
Sbjct: 177 NSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAV 236

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +W  M+      G MA+A ELF+ MP +NV +WNAMI  Y ++     A+KL    F+  
Sbjct: 237 SWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKL----FKKM 292

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK------CTCHYVFWDWGF 289
              +  + T+I+                IR+G   E    Y        T          
Sbjct: 293 PHKDSVSWTTIING-------------YIRVGKLDEARQVYNQMPCKDITAQTALMSGLI 339

Query: 290 QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           Q   ++ A   F R+ A DVV W +MI  YS  G   +   LF +M       + +++  
Sbjct: 340 QNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQM----PIKNSVSWNT 395

Query: 349 VLSDCSHAGLVEKGRKTFNLM 369
           ++S  + AG +++  + F  M
Sbjct: 396 MISGYAQAGQMDRATEIFQAM 416



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 219/484 (45%), Gaps = 83/484 (17%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           Q G  GKV+EA ++F  M+  + V+  SMI+V  +N  +  A  LF  M  S RN+V+ +
Sbjct: 26  QLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM--SLRNLVSWN 83

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            MI GY+    V+EA ++FD + E + +SW  +I+ Y +  ++++ R L + +P      
Sbjct: 84  TMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVP------ 137

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
                            KL+   W  M  G  +      A++ F QMP KD+V++N+M+ 
Sbjct: 138 ----------------DKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLA 181

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G M  A + F  M +RNV +WN M+  Y ++G   +A +L    F+    PN  +
Sbjct: 182 GYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQL----FEKIPNPNAVS 237

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
             ++L                   G  +   +                     AR  F+R
Sbjct: 238 WVTMLC------------------GLAKYGKMA-------------------EARELFDR 260

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           + +K+VVSW AMI  Y       +  +LF +M       D +++  +++     G +++ 
Sbjct: 261 MPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM----PHKDSVSWTTIINGYIRVGKLDEA 316

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           R+ +N M      K      + ++ +++  G++ EA ++ S++  H  D V   +++   
Sbjct: 317 RQVYNQMP----CKDITAQTALMSGLIQN-GRIDEADQMFSRIGAH--DVVCWNSMIAGY 369

Query: 423 RLHGDVRMADYIGE-RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVAS 481
              G  RM + +   R + ++ S S   ++S   +A  G+ D   ++ + M  R K + S
Sbjct: 370 SRSG--RMDEALNLFRQMPIKNSVSWNTMISG--YAQAGQMDRATEIFQAM--REKNIVS 423

Query: 482 FSQI 485
           ++ +
Sbjct: 424 WNSL 427


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 284/514 (55%), Gaps = 42/514 (8%)

Query: 8   GKVKEATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G + +A +LFD +    D V+  +M++ ++R   + +AE LF  MP   +N+V+ + MID
Sbjct: 20  GLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMP--VKNVVSWNTMID 77

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY K   VD+A +VF+ ++E N+ SW ++I+   +  +V+E RR FD MP +  +V+SWT
Sbjct: 78  GYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKR--DVISWT 135

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T+V+G A +G + +            V+SW  M TG  +N     A + F +MP +++ +
Sbjct: 136 TMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSS 195

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR- 235
           WN MIT ++  G +A A ++FN MP++NV +W  MI  Y + G   +A+K+   M +   
Sbjct: 196 WNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGG 255

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFW 285
             PNE T  ++L +C    G+ E    H L  +  ++  T       ++  KC       
Sbjct: 256 ARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCG------ 309

Query: 286 DWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                 +++ AR  F+   +  +D+V W  MI AY++HG G +   LF  M   G KP++
Sbjct: 310 ------ELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPND 363

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +++V +LS CSHAGLV++G   F+ + R    + R +H++CL D+  RAG++KEA   + 
Sbjct: 364 VSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIK 423

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           ++   +    + G LL  C  HGD+ +     + L +  P ++G Y+L +N++A+  +W 
Sbjct: 424 QLGT-KASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWR 482

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           E ++VR KM E+ +KK    S IEV  + H  LA
Sbjct: 483 EASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLA 516



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 18/246 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G+V EA K+FD M + + VS  +M+T + +N  L +A  LF  MPE  RN+ + + MI 
Sbjct: 144 SGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPE--RNLSSWNTMIT 201

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G+++ G +  ARKVF+E+ E NV SWT++I+GY +  + +   ++F  M   +K+     
Sbjct: 202 GFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEM---IKD----- 253

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
               G A       + V+   +   GL       L     V   ++  VA +A++  Y  
Sbjct: 254 ----GGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSV-YQDRTFVA-SALLNMYSK 307

Query: 187 AGNMAQASELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
            G ++ A ++F+  ++ QR++  WN MI  YA +G    A++L   M    F PN+ +  
Sbjct: 308 CGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYV 367

Query: 245 SILTSC 250
            +L++C
Sbjct: 368 ELLSAC 373


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 283/538 (52%), Gaps = 57/538 (10%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G  +EA ++FDEM + + VS   +++ +++N  + +A  +F  MPE  RN+V+
Sbjct: 55  VSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPE--RNVVS 112

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---- 116
            +AM+ GYV+ G V EA  +F  + E N  SWT +  G     ++D+ R+L+D MP    
Sbjct: 113 WTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDV 172

Query: 117 -------------------------LKLKNVVSWTTVVLGCAHNGLI-----------AK 140
                                    ++ +NV++WTT++ G   N  +            K
Sbjct: 173 VASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEK 232

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            EV SWT+M  G   +   + A E+F  MP K ++A NAMI A  + G + +A  +F+ M
Sbjct: 233 TEV-SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQM 291

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NM 257
             R+  TW  MI  Y R G E  A++L   M +    P+  +  SIL+ C  +       
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGR 351

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             HA  +R  F+ +  +       YV        ++  A+L F+R  +KD++ W ++I  
Sbjct: 352 QVHAHLVRCQFDGDVYVASVLMTMYVKCG-----ELVKAKLVFDRFPSKDIIMWNSIISG 406

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y++HG G +  ++F  M  SGT P+++T + +L+ CS+ G +E+G + F  M   +   P
Sbjct: 407 YASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTP 466

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
             EHYSC  D+L RAG+V +AM +++ M   + D  V GALLGAC+ H  + +A+   ++
Sbjct: 467 TVEHYSCTVDMLGRAGKVDKAMELINSMTI-KPDATVWGALLGACKTHSRLDLAEVAAKK 525

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF---SQIEVKGKDH 492
           L E++P ++G Y+L ++++A+R +W + A++RK M  R K V+ F   S IEV  K H
Sbjct: 526 LFEIEPENAGPYILLSSINASRSKWGDVAEMRKNM--RTKNVSKFPGCSWIEVGKKVH 581



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 179/411 (43%), Gaps = 60/411 (14%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-- 116
           V  S  I    + G+++EARK FD +    + SW S++SGYF      E R++FD MP  
Sbjct: 18  VNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER 77

Query: 117 ---------------------------LKLKNVVSWTTVVLGCAHNGLIAKLEV------ 143
                                      +  +NVVSWT +V G    G++ + E+      
Sbjct: 78  NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMP 137

Query: 144 ----ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
               +SWT M  GL        AR+ +  MP KD+VA   MI      G + +A E+F+ 
Sbjct: 138 ERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDE 197

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           M +RNV TW  MI  Y +N     A KL  +M +      E + TS+L          L 
Sbjct: 198 MRERNVITWTTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSML----------LG 243

Query: 260 HALAIRL----GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
           + L+ R+     F +   +     C+ +    G   ++  AR  F+++E +D  +W  MI
Sbjct: 244 YTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMI 303

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            AY   G   +   LFA+M + G +P   + + +LS C+    ++ GR+    + R   F
Sbjct: 304 KAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ-F 362

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                  S L  +  + G++ +A  V  + P   +D ++  +++     HG
Sbjct: 363 DGDVYVASVLMTMYVKCGELVKAKLVFDRFP--SKDIIMWNSIISGYASHG 411


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 269/500 (53%), Gaps = 37/500 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F   G + E+ +LFD+M   + VS  +MI+ +++  ++ +A  LF  MPE  R+ V+ 
Sbjct: 203 SGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPE--RDSVSW 260

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + MI+GYV+ G++DEAR++ +E+   N+ + T++ISGY +  +VDE RR FD   +   +
Sbjct: 261 TTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDE--IGTWD 318

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           VV W  ++ G AH+G I +   +S                      +M NKD+V WN MI
Sbjct: 319 VVCWNAMIAGYAHHGRINEALCLS---------------------KRMVNKDMVTWNTMI 357

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y   G M +A ++F  M +R++ +WN++I  +  NG    A+K   LM      P++ 
Sbjct: 358 SCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQL 417

Query: 242 TCTSILTSCEGM----LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           +    L+SC  +    + N L H + ++ G+     L Y    + +   +     +  A 
Sbjct: 418 SFACGLSSCATIAALQVGNQL-HQVVVKGGY-----LNYLVVNNALITMYAKCGRILEAG 471

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
           L F  +   DV+SW ++I  Y+ +G+G +  +LF  M   G  PDE+TF+G+LS C+HAG
Sbjct: 472 LVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAG 531

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           +V+ G K F  MS+ Y  +P AEHY+C+ D+L R G++ EA  +V  M        V GA
Sbjct: 532 MVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAG-VWGA 590

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRV 476
           LLGACR HG++ +      +L E +P  +  YVL +N+HA    W+E  +VR  M     
Sbjct: 591 LLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASST 650

Query: 477 KKVASFSQIEVKGKDHTLLA 496
            K    S +EV+ + H  L+
Sbjct: 651 VKEPGCSWVEVRNQVHGFLS 670



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 186/381 (48%), Gaps = 31/381 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++  A  LFD+M + + VS  +M++ +L N    +A  LF  MP  +R++ + 
Sbjct: 14  SVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMP--RRDLFSW 71

Query: 62  SAMIDGYVKAGRVDEARKVFDEI---YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           + MI  Y + G V++AR++FD +   Y   V  W ++ISGY K  +V+E +RLFD MP+K
Sbjct: 72  TLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVK 131

Query: 119 LKNVVSWTTVVLGCAHN-----GL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
             N++SW +++ G   N     GL     + + +V+SW  M  G  +      A ++F +
Sbjct: 132 --NLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQE 189

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
               ++V+W  M++ +   GN+ ++  LF+ MP RN+ +WNAMI  Y +      A +L 
Sbjct: 190 TQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLF 249

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
             M +   +   T     +   +      L + +  R    Q   ++    C+       
Sbjct: 250 EEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCN------- 302

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V+ AR  F+ +   DVV W AMI  Y++HG   +   L  RM+      D +T+  
Sbjct: 303 ---KVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMV----NKDMVTWNT 355

Query: 349 VLSDCSHAGLVEKGRKTFNLM 369
           ++S  +  G +++  K F  M
Sbjct: 356 MISCYAQVGQMDRAVKIFEEM 376



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 34/339 (10%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           +A+   +++ +M +   +N     AR  F +MP +++V+WN M++ Y+  G   +A +LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
            +MP+R++++W  MI  Y RNG    A +L + +  S        C + + S  G ++  
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCS--YRKGVACWNAMIS--GYVKKG 116

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWD---WGFQLDVNSARLA---FERLEAKDVVSW 311
             +  A RL  E           + + W+    G+  +    RL    F  ++ +DVVSW
Sbjct: 117 RVNE-AKRLFDEMPVK-------NLISWNSMLAGYTQN-RKMRLGLEFFNEMDERDVVSW 167

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             M+  +   G     ++ F    +   KP+ +++V +LS  +  G + + R+ F+ M  
Sbjct: 168 NLMVDGFIQVGDLDSAWKFF----QETQKPNVVSWVTMLSGFARNGNILESRRLFDQMP- 222

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRLHGDVRM 430
                     ++ +     +  ++ EA R+  +MP  ERD V    ++ G  R+      
Sbjct: 223 ----SRNIVSWNAMISAYVQRCEIDEASRLFEEMP--ERDSVSWTTMINGYVRIGKLDEA 276

Query: 431 ADYIGE---RLIELQPSSSGAYVLSANVHAARGEWDEFA 466
            + + E   R I  Q +    Y+    V  AR  +DE  
Sbjct: 277 RELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIG 315


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 264/505 (52%), Gaps = 66/505 (13%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  VS  S++  ++R+  L  A  LF+ MPE  RN V+ + ++ G + AGRV+EAR++FD
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE--RNHVSYTVLLGGLLDAGRVNEARRLFD 167

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           E+ + +V +WT+++SGY +A ++ E R LFD MP                       K  
Sbjct: 168 EMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP-----------------------KRN 204

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V+SWT M +G  +N    LAR+ F  MP ++ V+W AM+  Y+ AG++  A+ELFN MP+
Sbjct: 205 VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPE 264

Query: 203 -------------------------------RNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                                          R+  TW+AMI  Y +N     A+     M
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREM 324

Query: 232 FQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN  +  SILT C  +         HA  +R  F+ +          Y+     
Sbjct: 325 LWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCG-- 382

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              +++ A+  F   E KD+V W +MI  Y+ HG G Q   +F  M  +G  PD IT++G
Sbjct: 383 ---NLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            L+ CS+ G V++GR+ FN M+     +P AEHYSC+ D+L R+G V+EA  ++  MP  
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV- 498

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D V+ GAL+GACR+H +  +A+   ++L+EL+P ++G YVL ++++ + G W++ +++
Sbjct: 499 EPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKM 558

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDH 492
           RK +  R + K    S IE   + H
Sbjct: 559 RKFISSRNLNKSPGCSWIEYDKRVH 583



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 27/406 (6%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I    R  ++  A A F AMP   R   + +A++ GY +    D A  +F  +   ++ S
Sbjct: 24  IAHLARAGNIEGARAAFEAMP--LRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 92  WTSLISGYFKARQ-VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------K 140
           + +LISG    RQ + +       +P    +VVS+T+++ G   +GL+A          +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFP-PSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +S+T +  GL        AR  F +MP++D+VAW AM++ Y  AG + +A  LF+ M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P+RNV +W AMI  YA+NG    A KL  +M +     NE + T++L    G ++     
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLV---GYIQAGHVE 253

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
             A       E  +     C+ +   +G +  V++A+  FE++  +D  +W+AMI AY  
Sbjct: 254 DAAELFNAMPEHPVA---ACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQ 310

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +    +    F  ML  G +P+  + + +L+ C+   +++ GR+    M R   F     
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFDMDVF 369

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             S L  +  + G + +A RV     P  +D V+  +++     HG
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEP--KDIVMWNSMITGYAQHG 413



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 53/293 (18%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+V EA +LFDEM   D V+  +M++ + +   + +A ALF  MP  +RN+V+ +AMI 
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMIS 213

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + G V+ ARK+F+ + E N  SWT+++ GY +A  V++   LF+ MP     V +  
Sbjct: 214 GYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMP--EHPVAACN 271

Query: 127 TVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQM------P 170
            +++G    G++   + +          +W+ M    E+N     A   F +M      P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 171 N---------------------------------KDIVAWNAMITAYVDAGNMAQASELF 197
           N                                  D+ A +A+IT Y+  GN+ +A  +F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +    +++  WN+MI  YA++G    A+ + + M  +   P+  T    LT+C
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 275/521 (52%), Gaps = 49/521 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++ EA ++F  M + D VS  +++T FL+N D+ +A   F  MPE  R+  + 
Sbjct: 101 SGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPE--RDAASL 158

Query: 62  SAMIDGYVKAGRVDEARKVFDEI------YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           SA++ G ++ G +DEA +V           E  + ++ +LI+GY +  +VDE R+LFD++
Sbjct: 159 SALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQI 218

Query: 116 PL-----------KLKNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGLE 154
           P              +NVVSW T+++     G I           + + ISW TM +G  
Sbjct: 219 PFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYV 278

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                  A   F +MPN DI +WN MI  +   G++ + ++LF  MPQ+N+ +WN++I  
Sbjct: 279 NMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITG 338

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFE-- 269
           Y +N     A+K+   M      P+  T +S+L+   G+++    M  H L  +      
Sbjct: 339 YEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVIPDV 398

Query: 270 --QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGHGFQ 326
                 +T    C  +            A   F+ ++  K+V+SW AMI  Y++HG+  +
Sbjct: 399 PINNALITMYSRCGAII----------EAGTIFDEVKLQKEVISWNAMIGGYASHGYAVE 448

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  M     +P  ITF+ VL  C+HAGLVE+GR+ F  M+  +G +P  EHY+ L 
Sbjct: 449 ALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLV 508

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           DI+ R GQ+++A+ +++ M P E D  V GALL A ++H  + +A    E LI L+P SS
Sbjct: 509 DIMSRHGQLEQALDLINSM-PFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSS 567

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
             YVL  N++A  G+WD  A+VR  MER  +KK A++S ++
Sbjct: 568 APYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 197/465 (42%), Gaps = 94/465 (20%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I+   +N  + +A ALF  M E+  N V+ +A+I  YVK   + +ARK+FDE+ + ++ S
Sbjct: 4   ISNLAKNGRIDEARALFDQMEET--NTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVS 61

Query: 92  WTSLISGYFKA---RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LI 138
           W  +ISGY      R + EGR LFDRMP   +++VSW T++ G A NG          L+
Sbjct: 62  WNLMISGYVSCHGIRFLKEGRNLFDRMP--ERDIVSWNTMISGYAKNGRMDEALRMFKLM 119

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD------------------------- 173
            + +V+SW  + TG  +N     A EYF +MP +D                         
Sbjct: 120 PEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAARVVV 179

Query: 174 ------------IVAWNAMITAYVDAGNMAQASELFNLMP-------------QRNVWTW 208
                       + A+N +I  Y     + +A +LF+ +P              RNV +W
Sbjct: 180 RFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSW 239

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF 268
           N MI  Y + G    A +L + M        E    S  T   G + NML    A RL  
Sbjct: 240 NTMIMCYVKAGNIVFARELFDQMM-------ERDTISWNTMISGYV-NMLDMDEASRLFC 291

Query: 269 EQETSLTYKCTCHYVFWDWGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           E      +          W   +       D++     F R+  K++VSW ++I  Y  +
Sbjct: 292 EMPNPDIFS---------WNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKN 342

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
                  ++F +M   G KPD  T   VLS  +    ++ G +   L+++     P    
Sbjct: 343 DDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKT--VIPDVPI 400

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + L  +  R G + EA  +  ++   +++ +   A++G    HG
Sbjct: 401 NNALITMYSRCGAIIEAGTIFDEV-KLQKEVISWNAMIGGYASHG 444


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 280/503 (55%), Gaps = 21/503 (4%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA +LF+ M + + VS  SM+   +R+  L +A  +F  MP   +  V+ + MI G
Sbjct: 152 GRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQ--VSWNVMIAG 209

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y +  R++EAR +FD + + NV +WTS+ISGY +A  V EG  LF +MP +  NVVSWT 
Sbjct: 210 YAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPER--NVVSWTA 267

Query: 128 VVLGCAHNGLIAK-LEVISWTT-----MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           ++ G A NG   + L  +S+ T     M  G  R    + A+  F  +P +D ++W +MI
Sbjct: 268 MIGGFAWNGFYKEALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMI 327

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y + G +A+A  LFN MP R+   W  M+  + +N     A  L + M      P  +
Sbjct: 328 NGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNS 387

Query: 242 TCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T + +L +   M    +    H L ++  FE +  L       Y         ++  A  
Sbjct: 388 TFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCG-----EIGDAYS 442

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++ ++D++SW +MI+ +S+HG   +  ++F  ML SGT P+ +TF+G+LS CSHAGL
Sbjct: 443 IFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGL 502

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           + +G + F+ MS  +  +P+ EHY C+ ++L RAG+V+EA   +SK+ P E D  + GAL
Sbjct: 503 LNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKL-PFEPDLTIWGAL 561

Query: 419 LGACRLHG-DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-V 476
           LG C     +  +A    +RL+EL P ++ A+V+  N+HA+ G+  E  Q+RK+M  + V
Sbjct: 562 LGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGV 621

Query: 477 KKVASFSQIEVKGKDHTLLAPMR 499
           +KV   S I +KG+ +  L+  R
Sbjct: 622 RKVPGCSWILLKGEPYVFLSGDR 644



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 226/469 (48%), Gaps = 42/469 (8%)

Query: 9   KVKEATKLFDEMSQP---DPVSC-ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           +++EA  + DEM      D V C  S+++ F +N  + +A ALF  MPE  RN+V  +AM
Sbjct: 56  RLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE--RNVVTYNAM 113

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           + GYV+ GR+ +A + F+E+ E NV SWTSL+ G   A ++ E R LF+ MP   +NVVS
Sbjct: 114 LSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMP--ERNVVS 171

Query: 125 WTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           W ++++G   +G + +             +SW  M  G   ++  + AR  F  M ++++
Sbjct: 172 WNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV 231

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V W +MI+ Y  AGN+ +   LF  MP+RNV +W AMI  +A NG    A+  ++     
Sbjct: 232 VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSMSY---- 287

Query: 235 RFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
               N  +C S++      G LE   A +L   +    + S T     ++   + G    
Sbjct: 288 ----NTQSCNSMINGYIRIGQLEK--AQSLFDTIPVRDKISWTSMINGYF---NVG---Q 335

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   F  +  +D V+WT M+  +  +    +   LF+ M   G  P   TF  +L  
Sbjct: 336 IAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGA 395

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
                 +++GR+ F+ +     F+      + L  +  + G++ +A  + SKM    RD 
Sbjct: 396 AGAMAYLDQGRQ-FHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMI--SRDL 452

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAA 458
           +   +++     HG    A  + E ++     P+S +   +LSA  HA 
Sbjct: 453 ISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAG 501


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 278/509 (54%), Gaps = 56/509 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GKV EA K+FDEMS+ D     +MI+ +++   + +A  LF   P++Q++++  +AM+ G
Sbjct: 59  GKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDR-PDAQKSVIVWTAMVSG 117

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y+K  R++EA ++F+E+   NV SW ++I GY +  +  E   LF RMP +  NVVSW T
Sbjct: 118 YIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER--NVVSWNT 175

Query: 128 VVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           V+   AH G I   E          V+SWTTM  GL +N     ARE F +MP +++V+W
Sbjct: 176 VMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSW 235

Query: 178 NAMI-------------------------------TAYVDAGNMAQASELFNLMPQRNVW 206
           NAMI                               T ++  G++ +A +LF+ MPQ+NV 
Sbjct: 236 NAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVI 295

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCE---GMLENMLAHAL 262
           TW AM+  Y ++G    A+KL N M       P   T  ++L +C    G+ E    H +
Sbjct: 296 TWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQM 355

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMILAYSN 320
             +  F++ T +       Y         D + A+  F+   +   D+++W  MI AY++
Sbjct: 356 ISKTVFQESTYVVSALINMYSKCG-----DFHVAKKMFDDGLSGHMDLIAWNGMIAAYAH 410

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +   LF +M + G + +++T+VG+L+ CSHAGL ++G K F+ + +    + R +
Sbjct: 411 HGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVRED 470

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+CL D+  RAG++ EA+ ++  +   E    + GALL  C +HG+  +   + +++++
Sbjct: 471 HYTCLIDLCGRAGRLDEALNIIEGLGK-EVSLSLWGALLAGCSVHGNADIGKLVADKVLK 529

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVR 469
           ++P ++  Y+L++N++A+ G  +E A VR
Sbjct: 530 MEPENADTYLLASNMYASVGMREEAANVR 558


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 270/515 (52%), Gaps = 63/515 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQRNI 58
           S+FG T     A K+FDE++QP+     S+I  ++ N    +A +LF  M   P S  N 
Sbjct: 46  SRFGAT---DYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNF 102

Query: 59  VAESAMIDGYVKAGRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
              S+++    +  R    + V    FDE+ E ++ SW  +ISGY    +VD  R+ FDR
Sbjct: 103 TI-SSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDR 161

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP   +NVVSWT+++ G    G +A+ +V+                     F  MP KD+
Sbjct: 162 MP--ERNVVSWTSMICGYVKAGDMAEAQVL---------------------FDSMPVKDL 198

Query: 175 VAWNAMITAYVDAGNMAQASE-LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            +WN M++ Y+D G+    +  LF+ MP +N+ TW+ MI  YARNG    A++L     +
Sbjct: 199 ASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKE 258

Query: 234 SRFMPNETTCTSILTSC---------EGMLENMLAHALAIRLG-FEQETSLTYKCTCHYV 283
               P+ET    I+++C         E ++ N +  +L   L  F     +  KC     
Sbjct: 259 QDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCG---- 314

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    +  A   FE    KD++ ++ MI A +NHG G     LF +M ++  KPD 
Sbjct: 315 --------SIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDS 366

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TF+GVL+ C+H GLV++GRK F  M+  +G +P  +HY+C+ D+L R G ++EA  ++ 
Sbjct: 367 VTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIR 426

Query: 404 KMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
            MP  PH    VV GALL ACR+H +V++A+     L +++P +SG Y+L +N++AA G 
Sbjct: 427 NMPIAPHS---VVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGR 483

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           W   A+VR K+ E RV+K    S IE+    H  +
Sbjct: 484 WGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFV 518



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++  Y   G    A ++F+ + Q N + W ++I  Y  N     A  L   M +    
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-----WGFQLD 292
               T +S+L +   +       A+    GF    +    C    V W+     +G    
Sbjct: 99  VLNFTISSVLKALARLTRFKGGQAV---YGF----AFDEMCEKDIVSWNMMISGYGNNDR 151

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           V+ AR  F+R+  ++VVSWT+MI  Y   G   +   LF  M
Sbjct: 152 VDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSM 193


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/519 (32%), Positives = 281/519 (54%), Gaps = 37/519 (7%)

Query: 9   KVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAES 62
           K+ EA +L+++M Q    P+ V+  S++        L +   +   + E   + ++V  +
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVAN 319

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA-----RQVDEGRRLFDRMPL 117
           A+I  Y K   + +AR+ FD + + +V SW+++I+GY ++       +DE  +L +RM  
Sbjct: 320 ALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRR 379

Query: 118 K--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKL------------ 161
           +    N V++ +++  C+ +G + +   I       G E  R+  T +            
Sbjct: 380 EGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYE 439

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A + F +M NK++VAW +++T Y+  G++  A ++F+ M  RNV +WN MI  YA++G  
Sbjct: 440 AEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDI 499

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKC 278
               +LL+ M    F P+  T  SIL +C     +    L HA A++LG E +T +    
Sbjct: 500 AKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSL 559

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y         +V  AR  F+++  +D V+W AM+  Y  HG G +   LF RMLK  
Sbjct: 560 IGMYSKCG-----EVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKER 614

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             P+EITF  V+S C  AGLV++GR+ F +M   +  KP  +HY C+ D+L RAG+++EA
Sbjct: 615 VPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA 674

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
              + +MP  E D  V  ALLGAC+ H +V++A++    ++ L+PS++  YV  +N++A 
Sbjct: 675 EEFIQRMPC-EPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQ 733

Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            G WD+  +VRK M+ + +KK    S IE+ G+ HT +A
Sbjct: 734 AGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVA 772



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +++I+ Y K G V    +VF  +   +V +W+S+I+ Y       +    F+RM 
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM- 170

Query: 117 LKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
            K  N+    +++ +++  C +  ++ K   I      +G+E                  
Sbjct: 171 -KDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGME-----------------T 212

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+    A+IT Y   G ++ A E+F  M +RNV +W A+I   A++     A +L   M 
Sbjct: 213 DVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKML 272

Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQET-------SLTYKCTCHY 282
           Q+   PN  T  S+L SC   E +      H+     G E +        ++  KC C  
Sbjct: 273 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC-- 330

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG-----FQVFRLFARMLKS 337
                     +  AR  F+R+  +DV+SW+AMI  Y+  G+       +VF+L  RM + 
Sbjct: 331 ----------IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRRE 380

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  P+++TF+ +L  CS  G +E+GR+    +S+  GF+      + + ++  + G + E
Sbjct: 381 GVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCGSIYE 439

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
           A +V SKM    ++ V   +LL      GD+  A+ +
Sbjct: 440 AEQVFSKM--ENKNVVAWASLLTMYIKCGDLTSAEKV 474



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 195/450 (43%), Gaps = 58/450 (12%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAG 72
           ++ D   +P+ ++  S++        L KA  +   +  S  + ++   +A+I  Y K G
Sbjct: 169 RMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCG 228

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVL 130
            +  A ++F ++ E NV SWT++I    + R+++E   L+++M       N V++ +++ 
Sbjct: 229 EISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLN 288

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            C     + +   I       GLE                  D+V  NA+IT Y     +
Sbjct: 289 SCNTPEALNRGRRIHSHISERGLE-----------------TDVVVANALITMYCKCNCI 331

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGA-----AMKLLNLMFQSRFMPNETTCTS 245
             A E F+ M +R+V +W+AMI  YA++G +         +LL  M +    PN+ T  S
Sbjct: 332 QDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMS 391

Query: 246 ILTSC--EGMLEN-MLAHALAIRLGFEQETSLTY-------KCTCHY----VFWD----- 286
           IL +C   G LE     HA   ++GFE + SL         KC   Y    VF       
Sbjct: 392 ILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKN 451

Query: 287 ---WGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
              W   L       D+ SA   F  +  ++VVSW  MI  Y+  G   +VF L + M  
Sbjct: 452 VVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKV 511

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            G +PD +T + +L  C     +E+G K  +  +   G +      + L  +  + G+V 
Sbjct: 512 EGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVT 570

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           EA  V  K+    RD V   A+L     HG
Sbjct: 571 EARTVFDKIS--NRDTVAWNAMLAGYGQHG 598



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 11/242 (4%)

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQ 270
           R  + G    A++LL ++ Q   + N  T   I+  C  +    +  + H     LG   
Sbjct: 52  RLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAI 111

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           +  L       Y  +      DV S    F R+  +DVV+W++MI AY+ + H  + F  
Sbjct: 112 DIYLGNSLINFYSKFG-----DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 166

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RM  +  +P+ ITF+ +L  C++  ++EK R+   ++ +A G +      + L  +  
Sbjct: 167 FERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVV-KASGMETDVAVATALITMYS 225

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           + G++  A  +  KM   ER+ V   A++ A   H  +  A  + E++++   S +    
Sbjct: 226 KCGEISLACEIFQKMK--ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTF 283

Query: 451 LS 452
           +S
Sbjct: 284 VS 285



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 58/246 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G +  A K+F EMS  + VS   MI  + ++ D+ K   L  +M      P+        
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + + V  +++I  Y K G V EAR VFD+I   +  
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV 585

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +W ++++GY +     E   LF RM LK +   N +++T V+  C   GL+         
Sbjct: 586 AWNAMLAGYGQHGIGPEAVDLFKRM-LKERVPPNEITFTAVISACGRAGLVQ-------- 636

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVW 206
                 E   + ++ +E F   P K    +  M+     AG + +A E    MP + ++ 
Sbjct: 637 ------EGREIFRIMQEDFRMKPGKQ--HYGCMVDLLGRAGRLQEAEEFIQRMPCEPDIS 688

Query: 207 TWNAMI 212
            W+A++
Sbjct: 689 VWHALL 694



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G+V EA  +FD++S  D V+  +M+  + ++   P+A  LF+ M + +   N +  +A+I
Sbjct: 567 GEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVI 626

Query: 66  DGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
               +AG V E R++F  + E          +  ++    +A ++ E      RMP +  
Sbjct: 627 SACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCE-P 685

Query: 121 NVVSWTTVVLGC 132
           ++  W  ++  C
Sbjct: 686 DISVWHALLGAC 697


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 258/477 (54%), Gaps = 41/477 (8%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFDEIYEGNV 89
           +I   +R+ D+  A ++F  M    +N V+ ++++ G  K   R+ EA ++FDEI E + 
Sbjct: 67  IIATRVRSGDIDGALSVFHGM--RAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV------ 143
           +S+  ++S Y +    ++ +  F+RMP K  +  SW T++ G A  G + K  V      
Sbjct: 125 FSYNIMLSCYVRNGNFEKAQSFFNRMPFK--DAASWNTMITGYARRGEMEKARVLFYSMM 182

Query: 144 ----ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
               +SW  M +G       + A  +F   P + +VAW AMIT Y+ A  +  A  +F  
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 200 MP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           M  ++N+ TWNAMI  Y  N      +KL   M +    PN +  +S L  C  +     
Sbjct: 243 MTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS---- 298

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
               A+ LG +    + Y C C  +   W            FE ++ KDVV+W AMI  Y
Sbjct: 299 ----ALCLGRQIHQIVMY-CKCGELGDAWKL----------FEAMKKKDVVAWNAMISGY 343

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HG+  +   LF  M  S TKPD ITFV VL  C+HAGLV+ G   F+ M R Y  +PR
Sbjct: 344 AQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPR 403

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGE 436
            +HY+C+ D+L RAG+V+EA++++  MP  PH     V G LLGACR+H +V +A++  E
Sbjct: 404 PDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHA---AVFGTLLGACRVHKNVELAEFAAE 460

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +L+EL P ++  YV  AN++A++  W++ A+VRK+M E  V KV  +S IE++ K H
Sbjct: 461 KLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIH 517



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 37/276 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
            ++ EA +LFDE+ +PD  S   M++ ++RN +  KA++ F  MP   ++  + + MI G
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMP--FKDAASWNTMITG 164

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G +++AR +F  + E N  SW ++ISGY +   +++    F   P   + VV+WT 
Sbjct: 165 YARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAP--FRGVVAWTA 222

Query: 128 VVLG-----------CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------P 170
           ++ G                +  K  +++W  M +G   N+  +   + F  M      P
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 171 NKDIVAWNAM----------------ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           N   ++   +                I  Y   G +  A +LF  M +++V  WNAMI  
Sbjct: 283 NSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISG 342

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           YA++G    A+ L + M  S+  P+  T  ++L +C
Sbjct: 343 YAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLAC 378


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 268/512 (52%), Gaps = 54/512 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++  + + FDEM   D VS   M+  ++R  DL  A A F  +P    N+++   +++GY
Sbjct: 182 EISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSP--NVISWVNLVNGY 239

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            +AGR+ EAR++FD + E NV +W  L+SGY +  QV+    LF  MP K  N +SWTT+
Sbjct: 240 CQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEK--NSISWTTM 297

Query: 129 VLGCAHNG-------LIAKL----------------------------------EVISWT 147
           V G   +G       +++K+                                  + + W 
Sbjct: 298 VSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWN 357

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           TM +G  +  M   A   F QMPNKD+++WN MI      G + +A+ +F  M +RN  +
Sbjct: 358 TMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVS 417

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           WN++I  + +NG    A++   LM +     +  T    L++   +    +    H+L +
Sbjct: 418 WNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLV 477

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R GF  ++S        Y     G  L+   AR  F+ +  +D+VSW A+I  Y+++G+G
Sbjct: 478 RTGFISDSSPGNALISAYA--KCGRMLE---ARQVFDEMVVQDIVSWNALIDGYASNGNG 532

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +V  +F  M  +  +PDEIT V VLS CSHAGL+++G   FN M + Y  KP AEHY+C
Sbjct: 533 SEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTC 592

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L RAG+++EA  +V  M   + +  V GALLGACR+H +  +A    E+L EL+P 
Sbjct: 593 MVDLLGRAGRLREAFELVQGMQI-QPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPC 651

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERRV 476
            +  YVL +N+    G+WD+  +VR  M+  +
Sbjct: 652 KASNYVLLSNICVEAGKWDDADKVRVLMKESI 683



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 185/400 (46%), Gaps = 46/400 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A +LF+EM + + VS  +M++    +  L +A  LF  MP  +RN V+ + M+ 
Sbjct: 24  SGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMP--RRNPVSWNTMMV 81

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
              + GRV++AR +FD +   N YSWT ++S Y +A ++   R L DRMP + K    + 
Sbjct: 82  ACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGE-KCAACYN 140

Query: 127 TVVLGCAHNG----LIAKLE------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T++ G A NG     IA L+      ++SW ++  GL RN     + ++F +MP+KD+V+
Sbjct: 141 TMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVS 200

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN M+  YV AG++  AS  F+ +P  NV +W  +++ Y + G  G A +L + M +   
Sbjct: 201 WNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNV 260

Query: 237 -------------------------MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271
                                    MP E    S  T   G + +         L     
Sbjct: 261 VAWNVLLSGYVQFSQVEAAYNLFIEMP-EKNSISWTTMVSGFVRSGKLQEAKDVLSKMPS 319

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            ++  K    + +        ++ AR  F+ +  +D V W  MI  Y   G   +   LF
Sbjct: 320 DNVGAKTALMHGYLKSNL---IDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLF 376

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +M       D I++  +++ C+  G + K    F  M R
Sbjct: 377 QQM----PNKDMISWNTMIAGCAQGGQIRKAASIFRKMKR 412



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 163/364 (44%), Gaps = 54/364 (14%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A A+FR+  E           +    ++G++  AR++F+E+   NV S+ +++S      
Sbjct: 8   ASAVFRSNQE-----------LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHG 56

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
           ++ E RRLFD MP   +N VSW T+++ C+ +G +                       AR
Sbjct: 57  RLAEARRLFDEMP--RRNPVSWNTMMVACSQHGRVED---------------------AR 93

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEG 222
             F  MP ++  +W  M++ YV AG +  A EL + MP ++    +N MI  YA+NG   
Sbjct: 94  GLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFE 153

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A+ LL    Q    P+  +  S+L    G++ N     ++  + F  E       + + 
Sbjct: 154 DAIALL----QEMPAPDIVSWNSVLG---GLIRN---EEISRSVQFFDEMPDKDLVSWNL 203

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
           +   +    D++ A   F R+ + +V+SW  ++  Y   G   +   LF RM     + +
Sbjct: 204 MLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRM----PERN 259

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            + +  +LS       VE     F  M      +  +  ++ +     R+G+++EA  V+
Sbjct: 260 VVAWNVLLSGYVQFSQVEAAYNLFIEMP-----EKNSISWTTMVSGFVRSGKLQEAKDVL 314

Query: 403 SKMP 406
           SKMP
Sbjct: 315 SKMP 318


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 264/484 (54%), Gaps = 24/484 (4%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  VS  S++  ++R+  L  A  LF  MPE  RN V  + ++ G++ AGRV+EARK+FD
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPE--RNHVTYTVLLGGFLDAGRVNEARKLFD 167

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG--LIAK 140
           E+ + +V + T+++SGY +A ++ E R LFD MP +  NVVSWT ++ G A NG  ++A+
Sbjct: 168 EMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKR--NVVSWTAMISGYAQNGKVILAR 225

Query: 141 --LEV------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
              EV      +SWT M  G  +    + A + F  MP+  + A NAM+  +   G +  
Sbjct: 226 KLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDA 285

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F  M  R+  TW+AMI  Y +N     A+     M      PN T+  SILT C  
Sbjct: 286 AKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAA 345

Query: 253 MLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           +         HA  +R  F+ +          Y+        +++ A+  F   E KDVV
Sbjct: 346 LATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCG-----NLDKAKRVFNMFEPKDVV 400

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            W +MI  Y+ HG G +   +F  +  +   PD IT++GVL+ CS+ G V++GR+ FN M
Sbjct: 401 MWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSM 460

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
                 +  A HYSC+ D+L RAG V EA+ +++ MP  E D ++ GAL+GACR+H +  
Sbjct: 461 GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPV-EPDAIIWGALMGACRMHKNAE 519

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +A+   ++L+EL+P S+G YVL ++++ + G W++ + +RK +  R + K    S IE  
Sbjct: 520 IAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYN 579

Query: 489 GKDH 492
              H
Sbjct: 580 KMVH 583



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 191/429 (44%), Gaps = 73/429 (17%)

Query: 49  RAMPESQRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           R +P S    +VA +A I   V+AG ++ AR  FD +      S+ +LI+GYF+    D 
Sbjct: 7   RFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDA 66

Query: 108 GRRLFDRMP-------------LKLK------------------NVVSWTTVVLGCAHNG 136
              LF RMP             L L+                  +VVS+T+++ G   +G
Sbjct: 67  ALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHG 126

Query: 137 LIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
           L+A          +   +++T +  G         AR+ F +MP+KD+VA  AM++ Y  
Sbjct: 127 LLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQ 186

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           AG + +A  LF+ MP+RNV +W AMI  YA+NG    A KL  +M       NE + T++
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAM 242

Query: 247 LTS---------CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           L            E +   M  H +A                C+ +   +G    V++A+
Sbjct: 243 LVGYIQAGHVEDAEDLFNAMPDHPVA---------------ACNAMMVGFGQHGMVDAAK 287

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FER+ A+D  +W+AMI  Y  +    +    F  ML  G +P+  +F+ +L+ C+   
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALA 347

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
             + GR+    M R   F       S L  +  + G + +A RV +   P  +D V+  +
Sbjct: 348 TADYGRELHAAMLRC-SFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEP--KDVVMWNS 404

Query: 418 LLGACRLHG 426
           ++     HG
Sbjct: 405 MITGYAQHG 413



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 53/292 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA KLFDEM   D V+  +M++ + +   + +A ALF  MP  +RN+V+ +AMI G
Sbjct: 157 GRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMP--KRNVVSWTAMISG 214

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G+V  ARK+F+ + + N  SWT+++ GY +A  V++   LF+ MP     V +   
Sbjct: 215 YAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMP--DHPVAACNA 272

Query: 128 VVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQM------PN 171
           +++G   +G++   + +          +W+ M    E+N     A   F +M      PN
Sbjct: 273 MMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPN 332

Query: 172 ---------------------------------KDIVAWNAMITAYVDAGNMAQASELFN 198
                                             D+ A +A+IT Y+  GN+ +A  +FN
Sbjct: 333 YTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFN 392

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +   ++V  WN+MI  YA++G    A+ + + +  +R  P+  T   +LT+C
Sbjct: 393 MFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTAC 444


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 272/528 (51%), Gaps = 66/528 (12%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEARKVFDEIYEGNVY 90
           +   +R  DL  AE  F + P  ++     + ++ GY +A GR+ +AR +FD I   +  
Sbjct: 24  VAAAVRRGDLTGAEEAFASTP--RKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAV 81

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI------ 144
           S+ +L+S +F +   D  RRLF  MP++  +VVSW T+V G + +G + + + +      
Sbjct: 82  SYNTLLSCHFASGDADGARRLFASMPVR--DVVSWNTMVSGLSKSGAVEEAKAVFLAMPV 139

Query: 145 ----SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNL 199
               SW  M +G   +     A E+F   P K D V W AM++ Y+D GN+ +A E F  
Sbjct: 140 RNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 199

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENML 258
           MP RN+ +WNA++  Y +N     A++L   M  ++   PN +T +S+L  C  +     
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 259 A---HALAIRLGFEQE----TSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               H   ++L   +     TSL +  C C           D++SA   F  +  +DVV+
Sbjct: 260 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG----------DLSSACKLFGEMHTRDVVA 309

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI  Y+ HG G +   LF RM   G +P+ ITFV VL+ C H GL + G + F  M 
Sbjct: 310 WNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 369

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDV 428
             YG +PR +HYSC+ D+L RAG+++ A+ ++  MP  PH   +   G LL ACR++ ++
Sbjct: 370 ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAY---GTLLAACRVYKNL 426

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
             A+    +LIE  P S+GAYV  AN++A   +WD+ ++VR+ M +  V K   +S IE+
Sbjct: 427 EFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 486

Query: 488 KGKDHTL-----LAP---------------MREMGYV-----VLKEVD 510
           KG  H       L P               M+ MGYV     VL +VD
Sbjct: 487 KGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVD 534



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 53/293 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ +A  LFD +  PD VS  ++++    + D   A  LF +MP   R++V+ + M+ G
Sbjct: 63  GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP--VRDVVSWNTMVSG 120

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             K+G V+EA+ VF  +   N  SW +++SG+  +R +      F   P K  + V WT 
Sbjct: 121 LSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEK-GDAVLWTA 179

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM-------P 170
           +V G    G + K            ++SW  +  G  +N+    A   F  M       P
Sbjct: 180 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 239

Query: 171 N--------------------KDIVAW-------------NAMITAYVDAGNMAQASELF 197
           N                    K I  W              ++++ Y   G+++ A +LF
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             M  R+V  WNAMI  YA++G    A+ L   M      PN  T  ++LT+C
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 272/528 (51%), Gaps = 66/528 (12%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEARKVFDEIYEGNVY 90
           +   +R  DL  AE  F + P  ++     + ++ GY +A GR+ +AR +FD I   +  
Sbjct: 24  VAAAVRRGDLTGAEEAFASTP--RKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAV 81

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI------ 144
           S+ +L+S +F +   D  RRLF  MP++  +VVSW T+V G + +G + + + +      
Sbjct: 82  SYNTLLSCHFASGDADGARRLFASMPVR--DVVSWNTMVSGLSKSGAVEEAKAVFLAMPV 139

Query: 145 ----SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNL 199
               SW  M +G   +     A E+F   P K D V W AM++ Y+D GN+ +A E F  
Sbjct: 140 RNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 199

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENML 258
           MP RN+ +WNA++  Y +N     A++L   M  ++   PN +T +S+L  C  +     
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 259 A---HALAIRLGFEQE----TSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               H   ++L   +     TSL +  C C           D++SA   F  +  +DVV+
Sbjct: 260 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG----------DLSSACKLFGEMHTRDVVA 309

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI  Y+ HG G +   LF RM   G +P+ ITFV VL+ C H GL + G + F  M 
Sbjct: 310 WNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 369

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDV 428
             YG +PR +HYSC+ D+L RAG+++ A+ ++  MP  PH   +   G LL ACR++ ++
Sbjct: 370 ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAY---GTLLAACRVYKNL 426

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
             A+    +LIE  P S+GAYV  AN++A   +WD+ ++VR+ M +  V K   +S IE+
Sbjct: 427 EFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 486

Query: 488 KGKDHTL-----LAP---------------MREMGYV-----VLKEVD 510
           KG  H       L P               M+ MGYV     VL +VD
Sbjct: 487 KGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVD 534



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 53/293 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ +A  LFD +  PD VS  ++++    + D   A  LF +MP   R++V+ + M+ G
Sbjct: 63  GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP--VRDVVSWNTMVSG 120

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             K+G V+EA+ VF  +   N  SW +++SG+  +R +      F   P K  + V WT 
Sbjct: 121 LSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEK-GDAVLWTA 179

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM-------P 170
           +V G    G + K            ++SW  +  G  +N+    A   F  M       P
Sbjct: 180 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 239

Query: 171 N--------------------KDIVAW-------------NAMITAYVDAGNMAQASELF 197
           N                    K I  W              ++++ Y   G+++ A +LF
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             M  R+V  WNAMI  YA++G    A+ L   M      PN  T  ++LT+C
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 272/528 (51%), Gaps = 66/528 (12%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEARKVFDEIYEGNVY 90
           +   +R  DL  AE  F + P  ++     + ++ GY +A GR+ +AR +FD I   +  
Sbjct: 73  VAAAVRRGDLTGAEEAFASTP--RKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAV 130

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI------ 144
           S+ +L+S +F +   D  RRLF  MP++  +VVSW T+V G + +G + + + +      
Sbjct: 131 SYNTLLSCHFASGDADGARRLFASMPVR--DVVSWNTMVSGLSKSGAVEEAKAVFLAMPV 188

Query: 145 ----SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNL 199
               SW  M +G   +     A E+F   P K D V W AM++ Y+D GN+ +A E F  
Sbjct: 189 RNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 248

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLE--- 255
           MP RN+ +WNA++  Y +N     A++L   M  ++   PN +T +S+L  C  +     
Sbjct: 249 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 308

Query: 256 NMLAHALAIRLGFEQE----TSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               H   ++L   +     TSL +  C C           D++SA   F  +  +DVV+
Sbjct: 309 GKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG----------DLSSACKLFGEMHTRDVVA 358

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI  Y+ HG G +   LF RM   G +P+ ITFV VL+ C H GL + G + F  M 
Sbjct: 359 WNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 418

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDV 428
             YG +PR +HYSC+ D+L RAG+++ A+ ++  MP  PH   +   G LL ACR++ ++
Sbjct: 419 ELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAY---GTLLAACRVYKNL 475

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
             A+    +LIE  P S+GAYV  AN++A   +WD+ ++VR+ M +  V K   +S IE+
Sbjct: 476 EFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEI 535

Query: 488 KGKDHTL-----LAP---------------MREMGYV-----VLKEVD 510
           KG  H       L P               M+ MGYV     VL +VD
Sbjct: 536 KGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVD 583



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 53/293 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ +A  LFD +  PD VS  ++++    + D   A  LF +MP   R++V+ + M+ G
Sbjct: 112 GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMP--VRDVVSWNTMVSG 169

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             K+G V+EA+ VF  +   N  SW +++SG+  +R +      F   P K  + V WT 
Sbjct: 170 LSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEK-GDAVLWTA 228

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM-------P 170
           +V G    G + K            ++SW  +  G  +N+    A   F  M       P
Sbjct: 229 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 288

Query: 171 N--------------------KDIVAW-------------NAMITAYVDAGNMAQASELF 197
           N                    K I  W              ++++ Y   G+++ A +LF
Sbjct: 289 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 348

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             M  R+V  WNAMI  YA++G    A+ L   M      PN  T  ++LT+C
Sbjct: 349 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 401


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 274/528 (51%), Gaps = 66/528 (12%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEARKVFDEIYEGNVY 90
           +   +R+ DL  AE  F + P  ++     + ++ GY +A GR+ +AR +FD I   +V 
Sbjct: 24  VAAAVRHGDLAGAEEAFVSTP--RKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVV 81

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI------ 144
           S+ +L+  +F +   D  RRLF  MP++  +V SW T+V G + +G + + +V+      
Sbjct: 82  SYNTLLLCHFASGDADGARRLFASMPVR--DVASWNTMVSGLSKSGAVEEAKVVFLAMPV 139

Query: 145 ----SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNL 199
               SW  M +G   +     A E+F   P K D V W AM++ Y+D GN+ +A + F  
Sbjct: 140 RNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEA 199

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENML 258
           MP RN+ +WNA++  Y +N     A++L   M  ++   PN +T +S+L  C  +     
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 259 A---HALAIRLGFEQE----TSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               H   ++L   +     TSL +  C C           D++SA + F  +  +DVV+
Sbjct: 260 GKQIHQWCMKLLLSRNLTVGTSLVSMYCKCG----------DLSSACILFGEMHTRDVVA 309

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI  Y+ HG G +   LF RM   G +P+ ITFV VL+ C H GL + G + F  M 
Sbjct: 310 WNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQ 369

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDV 428
             YG +PR +HYSC+ D+L RAG+++ A+  +  MP  PH   +   G LL ACR++ ++
Sbjct: 370 ELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAY---GTLLAACRVYKNL 426

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
             A+    +LIE  P S+GAYV  AN++A   +WD+ ++VR+ M +  V K   +S IE+
Sbjct: 427 EFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEI 486

Query: 488 KGKDHTL-----LAP---------------MREMGYV-----VLKEVD 510
           KG  H       L P               M+EMGYV     VL +VD
Sbjct: 487 KGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVD 534



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 53/293 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ +A  LFD +  PD VS  +++     + D   A  LF +MP   R++ + + M+ G
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMP--VRDVASWNTMVSG 120

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             K+G V+EA+ VF  +   N  SW +++SG+  +  +      F   P K ++ V WT 
Sbjct: 121 LSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEK-EDAVLWTA 179

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM-------P 170
           +V G    G + K            ++SW  +  G  +N+    A   F  M       P
Sbjct: 180 MVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQP 239

Query: 171 N--------------------KDIVAW-------------NAMITAYVDAGNMAQASELF 197
           N                    K I  W              ++++ Y   G+++ A  LF
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILF 299

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             M  R+V  WNAMI  YA++G    A+ L   M      PN  T   +LT+C
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTAC 352


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/487 (32%), Positives = 257/487 (52%), Gaps = 33/487 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A   F  +  P+ VS  +++  + R   +  A  LF  MPE  RN+VA + M+D
Sbjct: 218 AGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPE--RNVVACNVMLD 275

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+  R++EA K+FDE+   N  SWT++ISG  +A ++ E + L D+M      V + T
Sbjct: 276 GYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNC--VAAKT 333

Query: 127 TVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G     ++             + + W TM +G  +  M + A   F +MPNKD V+
Sbjct: 334 ALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVS 393

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI  Y   G M +A  +F  M ++N  +WN++I  + +NG    A     LM +   
Sbjct: 394 WNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTN 453

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLG-----FEQETSLTYKCTCHYVFWDWG 288
             + +T  S L +C  +    +    H+L +R G     F +   ++    C  +     
Sbjct: 454 RADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRML---- 509

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                  A+  F+ +  KD+VSW A++  Y+++G G +   +F  M  +G +PDE+TFVG
Sbjct: 510 ------EAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVG 563

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +LS CS AGL+++G   FN M+  Y  KP AEHY+C+AD+L RAG++ EA  +V  M   
Sbjct: 564 ILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQ 623

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
             +  V GALLGAC+++ +  +A    E+L EL+P  +  YVL +N+ A  G+WDE  + 
Sbjct: 624 P-NAGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKA 682

Query: 469 RKKMERR 475
           R  ++ +
Sbjct: 683 RASIKEK 689



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 181/407 (44%), Gaps = 60/407 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A +LFD M + + V+  SM++   R+  + +A ALF  MP   RN V+ +AMI 
Sbjct: 31  SGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMP--SRNAVSWNAMIA 88

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---------- 116
                GRV +AR +FD +   + +SWT ++S Y +A +++  R + DRMP          
Sbjct: 89  ALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDKCTACYNA 148

Query: 117 --------------------LKLKNVVSWTTVVLGCAHNGLIAKL----------EVISW 146
                               +   ++ SW + + G   +G + +           +++SW
Sbjct: 149 MISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSW 208

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
             M  G  R      A  +F ++ + ++V+W  ++  Y  AG ++ A +LF+ MP+RNV 
Sbjct: 209 NLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVV 268

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
             N M+D Y R      A KL + M       N  + T+I++         LA A  ++ 
Sbjct: 269 ACNVMLDGYVRLSRLEEACKLFDEMPGK----NSISWTTIISG--------LARAGKLQE 316

Query: 267 GFEQETSLTYKCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             +    +++ C         G+  +  VN AR  F+ +E  D V W  MI  Y   G  
Sbjct: 317 AKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGML 376

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +   LF RM       D +++  +++  +  G + K    F  MSR
Sbjct: 377 EEAMLLFQRM----PNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSR 419



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 130/314 (41%), Gaps = 57/314 (18%)

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
           ++ Q+   RRLFD MP +                         +++ +M + L R+    
Sbjct: 30  RSGQLAAARRLFDSMPRR-----------------------NTVTYNSMLSALARHGRID 66

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            AR  F  MP+++ V+WNAMI A  D G +A A  LF+ MP R+ ++W  M+  YAR G 
Sbjct: 67  EARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGE 126

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
              A  +L+       MP +  CT+          N +    A    F+    L  +   
Sbjct: 127 LELARDVLDR------MPGD-KCTACY--------NAMISGYAKNGRFDDAVKLLREMPA 171

Query: 281 HYVF-WDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             +F W+        S ++      F+ +  KD+VSW  M+  +   G        F R+
Sbjct: 172 PDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRI 231

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRA 392
                 P+ +++V +L+    AG +   R  F+ M       P     +C  + D   R 
Sbjct: 232 ----ESPNVVSWVTLLNGYCRAGRISDARDLFDRM-------PERNVVACNVMLDGYVRL 280

Query: 393 GQVKEAMRVVSKMP 406
            +++EA ++  +MP
Sbjct: 281 SRLEEACKLFDEMP 294


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 267/477 (55%), Gaps = 20/477 (4%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           MI +F+R  ++  A  +F  M E  R+ V+ ++MI GY   GRVD ARK+FD + E NV 
Sbjct: 143 MIELFMRCGEMGSARQMFDEMEE--RDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVI 200

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV--------LGCAHN--GLIAK 140
           SWTS+I GY KA  + E R LF+RMP K  ++ SW  +V        L  A N   L+  
Sbjct: 201 SWTSMIQGYVKAGDLLEARVLFERMPEK--DLASWKVMVSAYMSVGNLVAARNLFELMPI 258

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +V +W  M +G  +      A+E+F +M  +++ +W  +I  Y+  G++  A  +F+ M
Sbjct: 259 HDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQM 318

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-LENMLA 259
           P++N+  W+ MI  YA+ G   +++KL     +    P+ET    I+++C  + + +   
Sbjct: 319 PEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAE 378

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
             +   +G     +L    +   ++   G   ++  A   FE ++ KD+  ++ +I A++
Sbjct: 379 SVICDFVGPSLFPNLQVVTSLIDMYAKCG---NIERAVQVFEMVDQKDLHCYSTVITAFA 435

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
           NHG       LF+ M K+  KPD + F+GVL+ C+H GLV +GR+ F  M   YG +P  
Sbjct: 436 NHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSE 495

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +HY+C+ DIL RAG ++EA  ++  MP    +  V GALL ACR+H +V++A+     L 
Sbjct: 496 KHYACMVDILGRAGCLEEAHSLICSMPVAP-NATVWGALLSACRVHLNVQLAEAAATELF 554

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           +++P++SG YVL  N++A  G+WD+F++VR  + E RV+K    S IE+    H  +
Sbjct: 555 QIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFV 611



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 166/383 (43%), Gaps = 62/383 (16%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------PLK--- 118
           Y K G V  A K+FDE  E N + WT+LI G+ +  Q +     F +M      PL    
Sbjct: 46  YSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTI 105

Query: 119 ---------------------------------LKNVVSWTTVVLGCAHNGLIAKL---- 141
                                            +KNV+    + + C   G   ++    
Sbjct: 106 ASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVM--IELFMRCGEMGSARQMFDEM 163

Query: 142 ---EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
              + +SW +M TG   N    +AR+ F +M  +++++W +MI  YV AG++ +A  LF 
Sbjct: 164 EERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFE 223

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            MP++++ +W  M+  Y   G   AA  L  LM     + +  T   +++ C    E   
Sbjct: 224 RMPEKDLASWKVMVSAYMSVGNLVAARNLFELM----PIHDVGTWNLMISGCCKAGEMDA 279

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
           A     R+   QE ++         +   G   DV++AR  F+++  K++V+W+ MI  Y
Sbjct: 280 AKEFFDRM---QERNVASWVMIIDGYIKVG---DVDAARSVFDQMPEKNLVAWSTMIGGY 333

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           +  GH +   +L+    + G KPDE   +G++S CS  G+ +              F P 
Sbjct: 334 AKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLF-PN 392

Query: 379 AEHYSCLADILRRAGQVKEAMRV 401
            +  + L D+  + G ++ A++V
Sbjct: 393 LQVVTSLIDMYAKCGNIERAVQV 415



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 138/296 (46%), Gaps = 53/296 (17%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE---------- 53
           +G  G+V  A KLFD M + + +S  SMI  +++  DL +A  LF  MPE          
Sbjct: 178 YGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMV 237

Query: 54  ----SQRNIVAE---------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
               S  N+VA                + MI G  KAG +D A++ FD + E NV SW  
Sbjct: 238 SAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVM 297

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-LIAKLEV---------- 143
           +I GY K   VD  R +FD+MP   KN+V+W+T++ G A  G   + L++          
Sbjct: 298 IIDGYIKVGDVDAARSVFDQMP--EKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIK 355

Query: 144 ------ISWTTMCTGLERNAMTKLAREYFVQ---MPNKDIVAWNAMITAYVDAGNMAQAS 194
                 +   + C+ L      +     FV     PN  +V   ++I  Y   GN+ +A 
Sbjct: 356 PDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVT--SLIDMYAKCGNIERAV 413

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++F ++ Q+++  ++ +I  +A +G    A+ L + M ++   P+      +LT+C
Sbjct: 414 QVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTAC 469



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 23/297 (7%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++  Y   G ++ A +LF+  P+ N + W A+I  +  N     A      M +   +
Sbjct: 40  NKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIV 99

Query: 238 PNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P   T  S+L +   +    +  L + LA+R G+E +  L  K     +F   G   ++ 
Sbjct: 100 PLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFD--LVVKNVMIELFMRCG---EMG 154

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           SAR  F+ +E +D VSW +MI  Y N+G      +LF RM     + + I++  ++    
Sbjct: 155 SARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRM----EERNVISWTSMIQGYV 210

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
            AG + + R  F  M      +     +  +       G +  A  +   MP H  D   
Sbjct: 211 KAGDLLEARVLFERMP-----EKDLASWKVMVSAYMSVGNLVAARNLFELMPIH--DVGT 263

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSS----SGAYVLSANVHAARGEWDEFAQ 467
              ++  C   G++  A    +R+ E   +S       Y+   +V AAR  +D+  +
Sbjct: 264 WNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPE 320


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 263/505 (52%), Gaps = 67/505 (13%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I+ Y K G+  EARKVFD++   N+YSW +++SGY K   +   R+LFD+MP K  +VV
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK--DVV 158

Query: 124 SWTTVVLGCAHNG--------------LIAKLEVISWT---TMCTGLERNAMTKL----- 161
           SW T+V+  A  G              L  +    S+    T+C  L+   +T+      
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218

Query: 162 ---------------------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                                      AR+ F +M  +D++AW  M++ Y   G+M  A+
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           ELF  MP++N  +W A+I  YARNG    A++L   M      P++ T +S L +C  + 
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA 338

Query: 255 ---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
                   HA  +R+ F+  T +       Y          +   R  F+ +  K DVV 
Sbjct: 339 SLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG-----SLGIGRKVFDLMGNKLDVVL 393

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W  +I A + HG G +  ++   M++SG KPD+ITFV +L+ CSH+GLV++G   F  MS
Sbjct: 394 WNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMS 453

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
             YG  P  EHY+CL D+L RAG  +E M  + KM P++ D  V  ALLG CR+HG + +
Sbjct: 454 CDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKM-PYKPDDRVWNALLGVCRIHGHIEL 512

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
                ERLIEL+P SS AYVL ++++A  G W+   +VR+ M ER+VKK  + S +E++ 
Sbjct: 513 GRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIEN 572

Query: 490 KDHTLLA-----PMREMGYVVLKEV 509
           K H+        P++E  Y VL+++
Sbjct: 573 KVHSFSVSDSSHPLKEQIYSVLEQL 597



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 42/168 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A KLFDEMS  D ++  +M++ + +  D+  A  LF  MPE  +N V+ +A+I G
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPE--KNPVSWTALISG 298

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
           Y + G   +A ++F ++                                       ++ N
Sbjct: 299 YARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPN 358

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
               ++LI  Y K   +  GR++FD M  KL +VV W T++   A +G
Sbjct: 359 TIVVSALIDMYSKCGSLGIGRKVFDLMGNKL-DVVLWNTIISALAQHG 405


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 275/517 (53%), Gaps = 44/517 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++ +A KLF+ M + + VS  ++IT FL N D+  A   FR MPE      + 
Sbjct: 143 SGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYS--TSL 200

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGN---VYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           SA+I G V+ G +D A  +  E   G+   V+++ +LI+GY +   V+E RRLFD +P  
Sbjct: 201 SALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDD 260

Query: 119 L-----------KNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGLERNA 157
                       +NVVSW ++++     G I           + +  SW TM +G  + +
Sbjct: 261 RGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQIS 320

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
             + A + F +MP  D+++WN +++ +   G++  A + F  MP +N+ +WN++I  Y +
Sbjct: 321 NMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEK 380

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFE----Q 270
           N     A++L + M      P+  T +S+++ C G++   L    H L  ++        
Sbjct: 381 NEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPIN 440

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
            + +T    C  +         V++  +  E    KDV++W AMI  Y++HG   +   L
Sbjct: 441 NSLITMYSRCGAI---------VDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALEL 491

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F  M +    P  ITF+ V++ C+HAGLVE+GR+ F  M   YG + R EH++ L DIL 
Sbjct: 492 FKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILG 551

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           R GQ++EAM +++ M P + D  V GALL ACR+H +V +A    + LI L+P SS  YV
Sbjct: 552 RQGQLQEAMDLINTM-PFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYV 610

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           L  N++A  G+WD+   VR  M E+ VKK A +S ++
Sbjct: 611 LLYNIYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 647



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 207/456 (45%), Gaps = 79/456 (17%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I+  +R+  L +A ALF +M    R+ V  ++MI GYV    +  AR++FDE+   +V S
Sbjct: 46  ISNLIRSGRLSEARALFDSM--KHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVS 103

Query: 92  WTSLISGYFKARQ---VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LI 138
           W  ++SGYF  R    V+EGRRLF+ MP   ++ VSW TV+ G A NG           +
Sbjct: 104 WNLIVSGYFSCRGSRFVEEGRRLFELMP--QRDCVSWNTVISGYAKNGRMDQALKLFNAM 161

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMP---------------------------- 170
            +   +S   + TG   N     A ++F  MP                            
Sbjct: 162 PERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILC 221

Query: 171 -----NKDIV-AWNAMITAYVDAGNMAQASELFNLMP-------------QRNVWTWNAM 211
                + D+V A+N +I  Y   G++ +A  LF+ +P             +RNV +WN+M
Sbjct: 222 ECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSM 281

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT-SILTSCEGMLENMLAHALAIRLGFEQ 270
           +  Y + G   +A +L + M +      + TC+ + + S    + NM   +   R     
Sbjct: 282 MMCYVKAGDIVSARELFDRMVE------QDTCSWNTMISGYVQISNMEEASKLFR----- 330

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           E  +    + + +   +  + D+N A+  FER+  K+++SW ++I  Y  +       +L
Sbjct: 331 EMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQL 390

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F+RM   G +PD  T   V+S C+    +  G++   L+++     P +   + L  +  
Sbjct: 391 FSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKI--VIPDSPINNSLITMYS 448

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           R G + +A  V +++  + +D +   A++G    HG
Sbjct: 449 RCGAIVDACTVFNEIKLY-KDVITWNAMIGGYASHG 483


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 258/491 (52%), Gaps = 39/491 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFD 82
           D VS    I  F+R  DL  A  +F  M  S R  V  + M+ GY K AG+V EA ++FD
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKM--SVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL- 141
           +I E +  S+  ++  Y ++  V+     F++MP+K  ++ SW T++ G A NG + K  
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVK--DIASWNTLISGFAQNGQMQKAF 187

Query: 142 ---------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                      +SW+ M +G   +   + A E +  +  K +V   AM+T Y+  G +  
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVEL 247

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F  M  +N+ TWN+MI  Y  N      +K+   M +SR  PN  + +S+L  C  
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 253 MLENMLA---HALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           +    L    H L  +    ++T+     ++  C C           D++SA   F  + 
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCG----------DLDSAWKLFLEMP 357

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KDV+SW AMI  Y+ HG G +   LF +M     KPD ITFV V+  C+HAG V+ G +
Sbjct: 358 RKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGAC 422
            F  M + +G + +  HY+C+ D+L RAG++ EA+ ++ +MP  PH     + G LLGAC
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHA---AIYGTLLGAC 474

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVAS 481
           R+H ++ +A++    L+ L P+S+  YV  AN++AA  +WD+ A+VRK M E  V K+  
Sbjct: 475 RIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPG 534

Query: 482 FSQIEVKGKDH 492
           +S IE+K   H
Sbjct: 535 YSWIEIKSVTH 545



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 57/314 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           GKVKEA +LFD++ +PD VS   M+  +LR++ +  A A F  MP               
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFA 178

Query: 55  ----------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
                           ++N V+ SAMI GYV+ G ++ A +++  +   +V   T++++G
Sbjct: 179 QNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTG 238

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG----C-AHNGLIA------------KL 141
           Y K  +V+   R+F RM   +KN+V+W +++ G    C A +GL               L
Sbjct: 239 YMKFGKVELAERIFQRM--AVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPL 296

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            + S    C+ L    + +   +   + P +KD  A  ++I+ Y   G++  A +LF  M
Sbjct: 297 SLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM 356

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P+++V +WNAMI  YA++G    A+ L + M      P+  T  +++ +C         H
Sbjct: 357 PRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN--------H 408

Query: 261 ALAIRLGFEQETSL 274
           A  + LG +   S+
Sbjct: 409 AGFVDLGVQYFKSM 422


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 266/518 (51%), Gaps = 65/518 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A + FDEM + D  S   M+  F+R  DL  A + F A  ES  N+++   +++
Sbjct: 187 SGEMVRAVQFFDEMVK-DMTSWNLMLAGFVRTGDLNAASSFF-AKIESP-NVISWVTLLN 243

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +AGR+ +AR +FD + E NV +W  ++ GY     ++E  +LFD MP+K  N +SWT
Sbjct: 244 GYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIK--NSISWT 301

Query: 127 TVVLGCAHNG-------LIAKL----------------------------------EVIS 145
           T++ G A  G       L+ K+                                  + + 
Sbjct: 302 TIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVC 361

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W TM +G  +  + + A   F +MPNKD+V+WN MI  Y   G M +A  +F  M +RN 
Sbjct: 362 WNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNT 421

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--------LENM 257
            +WN++I  + +N     A+    LM +     + +T  S L +C  +        L N+
Sbjct: 422 VSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNL 481

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           L  +  I   F     ++    C  +            A+  F+ +  KD+VSW A+I  
Sbjct: 482 LVRSGHINDSFAGNALISTYAKCGRIL----------EAKQIFDEMVYKDIVSWNALIDG 531

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y+++G G +   +F  M  +G +PDE+TFVG+LS CSHAGL+++G   F  M++ Y  KP
Sbjct: 532 YASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKP 591

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
            AEHY+C+ D+L RAG++ EA  +V  M   + +  V GALLGAC +H +  +A    ER
Sbjct: 592 VAEHYACMVDLLGRAGKLNEAFELVQGMQI-QPNAGVWGALLGACHMHKNHELAQLAAER 650

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           L EL+P  +  YVL +N+ A  G+WDE  + R  ++ +
Sbjct: 651 LSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEK 688



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 205/494 (41%), Gaps = 102/494 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A +LFD M   + V+  +M++   R+  + +A ALF  MP   RN V+ +AMI 
Sbjct: 31  SGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMP--GRNTVSWNAMIA 88

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---------- 116
                GRV +AR +FD +   + +SWT ++S Y +   ++  R + DRMP          
Sbjct: 89  ALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNA 148

Query: 117 --------------LKL------KNVVSWTTVVLGCAHNGLIAKL---------EVISWT 147
                         +KL       ++VSW + + G   +G + +          ++ SW 
Sbjct: 149 MISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWN 208

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M  G  R      A  +F ++ + ++++W  ++  Y  AG +A A +LF+ MP+RNV  
Sbjct: 209 LMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVA 268

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS-------------CEGML 254
           WN M+D Y    P   A KL    F    + N  + T+I++               + M 
Sbjct: 269 WNVMLDGYVHLSPIEEACKL----FDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMS 324

Query: 255 ENMLAHALAIRLGFEQETSL-----------TYKCTCHYVFWDWGFQLDV-NSARLAFER 302
            N +A   A+  G+ Q                +   C         Q  +   A L F+R
Sbjct: 325 FNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQR 384

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARM---------------------------- 334
           +  KD+VSW  MI  Y+  G   +   +F RM                            
Sbjct: 385 MPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHF 444

Query: 335 --LKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
             ++ GT + D  T+   L  C++  ++  GR+  NL+ R+ G    +   + L     +
Sbjct: 445 MLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRS-GHINDSFAGNALISTYAK 503

Query: 392 AGQVKEAMRVVSKM 405
            G++ EA ++  +M
Sbjct: 504 CGRILEAKQIFDEM 517



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 134/336 (39%), Gaps = 73/336 (21%)

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
           ++ Q+   RRLFD MPL+                         +++  M + L R+    
Sbjct: 30  RSGQLAAARRLFDAMPLR-----------------------NTVTYNAMLSALARHGRID 66

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            AR  F  MP ++ V+WNAMI A  D G +A A  LF+ MP R+ ++W  M+  YAR G 
Sbjct: 67  EARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGD 126

Query: 221 EGAAMKLLNLMFQSRFMPNE--TTCTSILTSCEG----------MLENMLAHAL----AI 264
              A  +L+       MP +  T C + + S             +L  M A  L    + 
Sbjct: 127 LELARDVLDR------MPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSA 180

Query: 265 RLGFEQETSLTYKCTCHYVFWD--------WGFQL-------DVNSARLAFERLEAKDVV 309
             G  Q   +         F+D        W   L       D+N+A   F ++E+ +V+
Sbjct: 181 LAGLTQSGEMVRAVQ----FFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVI 236

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW  ++  Y   G       LF RM +       +   G +    H   +E+  K F+ M
Sbjct: 237 SWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYV----HLSPIEEACKLFDEM 292

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
                       ++ +   L RAG+++EA  ++ KM
Sbjct: 293 PIKNSIS-----WTTIISGLARAGKLQEAKDLLDKM 323



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 35/276 (12%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           T L R+     AR  F  MP ++ V +NAM++A    G + +A  LF+ MP RN  +WNA
Sbjct: 26  TRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNA 85

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG 267
           MI   + +G    A  L +     R    +    +++ SC    G LE  LA  +  R+ 
Sbjct: 86  MIAALSDHGRVADARSLFD-----RMPVRDEFSWTVMVSCYARGGDLE--LARDVLDRMP 138

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            +       KCT  Y     G+  +   + A      + A D+VSW + +   +  G   
Sbjct: 139 GD-------KCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMV 191

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF--KPRAEHYS 383
           +  + F  M+K  T  + +           AG V  G    N  S  +     P    + 
Sbjct: 192 RAVQFFDEMVKDMTSWNLML----------AGFVRTG--DLNAASSFFAKIESPNVISWV 239

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            L +   RAG++ +A  +  +MP  ER+ V    +L
Sbjct: 240 TLLNGYCRAGRIADARDLFDRMP--ERNVVAWNVML 273


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 257/491 (52%), Gaps = 39/491 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFD 82
           D VS    I  F+R  DL  A  +F  M  S R  V  + M+ GY K AG+V EA ++FD
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKM--SVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL- 141
           +I E +  S+  ++  Y ++  V      F++MP+K  ++ SW T++ G A NG + K  
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVK--DIASWNTLISGFAQNGQMQKAF 187

Query: 142 ---------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                      +SW+ M +G   +   + A E +  +  K +V   AM+T Y+  G +  
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVEL 247

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F  M  +N+ TWN+MI  Y  N      +K+   M +SR  PN  + +S+L  C  
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 253 MLENMLA---HALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           +    L    H L  +    ++T+     ++  C C           D++SA   F  + 
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCG----------DLDSAWKLFLEMP 357

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KDV++W AMI  Y+ HG G +   LF +M     KPD ITFV V+  C+HAG V+ G +
Sbjct: 358 RKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGAC 422
            F  M + +G + +  HY+C+ D+L RAG++ EA+ ++ +MP  PH     + G LLGAC
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHA---AIYGTLLGAC 474

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVAS 481
           R+H ++ +A++    L+ L P+S+  YV  AN++AA  +WD+ A+VRK M E  V K+  
Sbjct: 475 RIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPG 534

Query: 482 FSQIEVKGKDH 492
           +S IE+K   H
Sbjct: 535 YSWIEIKSVTH 545



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 57/314 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           GKVKEA +LFD++ +PD VS   M+  +LR++ +  A A F  MP               
Sbjct: 119 GKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFA 178

Query: 55  ----------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
                           ++N V+ SAMI GYV+ G ++ A +++  +   +V   T++++G
Sbjct: 179 QNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTG 238

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG----C-AHNGLIA------------KL 141
           Y K  +V+   R+F RM   +KN+V+W +++ G    C A +GL               L
Sbjct: 239 YMKFGKVELAERIFQRM--AVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPL 296

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            + S    C+ L    + +   +   + P +KD  A  ++I+ Y   G++  A +LF  M
Sbjct: 297 SLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM 356

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P+++V TWNAMI  YA++G    A+ L + M      P+  T  +++ +C         H
Sbjct: 357 PRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN--------H 408

Query: 261 ALAIRLGFEQETSL 274
           A  + LG +   S+
Sbjct: 409 AGFVDLGVQYFKSM 422


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 171/519 (32%), Positives = 276/519 (53%), Gaps = 43/519 (8%)

Query: 8   GKVKEATKLFDEMSQPD----PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G +  A K+FDE+  PD         +M++ + +     +A+ LF  MPE  RN++  +A
Sbjct: 144 GPIGHARKVFDEI--PDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE--RNVITWTA 199

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           M+ GY K   ++ AR+ FD + E +V SW +++SGY +    +E  RLFD M       +
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPD 259

Query: 122 VVSWTTVVLGCAHNG-------LIAKLEVISWTTMCTGLERNAMTKL---------AREY 165
             +W TV+  C+  G       L+  L        C    R A+  +         AR  
Sbjct: 260 ETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNC--FVRTALLDMYAKCGSIGAARRI 317

Query: 166 FVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           F ++   ++ V WNAMI+AY   GN+  A ELFN MP RNV TWN+MI  YA+NG    A
Sbjct: 318 FDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMA 377

Query: 225 MKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
           ++L   M  ++   P+E T  S++++C G L  +      +R   E +  L+       +
Sbjct: 378 IELFKEMITAKKLTPDEVTMVSVISAC-GHLGALELGNWVVRFLTENQIKLSISGHNAMI 436

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           F  +     +  A+  F+ +  +DVVS+  +I  ++ HGHG +   L + M + G +PD 
Sbjct: 437 FM-YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 495

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TF+GVL+ CSHAGL+E+GRK F  +       P  +HY+C+ D+L R G++++A R + 
Sbjct: 496 VTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTME 550

Query: 404 KMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           +MP  PH     V G+LL A R+H  V + +    +L EL+P +SG ++L +N++A+ G 
Sbjct: 551 RMPMEPHAG---VYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 607

Query: 462 WDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLAPMR 499
           W +  ++R+ M++  VKK   +S +E  GK H  +   R
Sbjct: 608 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADR 646



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 40/177 (22%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +   G +  A +LF+ M   + V+  SMI  + +N     A  LF+ M  +++     
Sbjct: 335 SAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 394

Query: 57  ---------------------------------NIVAESAMIDGYVKAGRVDEARKVFDE 83
                                            +I   +AMI  Y + G +++A++VF E
Sbjct: 395 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 454

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
           +   +V S+ +LISG+       E   L   M       + V++  V+  C+H GL+
Sbjct: 455 MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 511


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/500 (33%), Positives = 262/500 (52%), Gaps = 54/500 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++  + + FDEM   D VS   M+  ++R  DL  A A F  +P    N+++   +++GY
Sbjct: 182 EISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSP--NVISWVNLVNGY 239

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            +AGR+ EAR++FD + E NV +W  L+SGY +  QV+    LF  MP K  N +SWTT+
Sbjct: 240 CQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEK--NSISWTTM 297

Query: 129 VLGCAHNG-------LIAKL----------------------------------EVISWT 147
           V G   +G       +++K+                                  + + W 
Sbjct: 298 VSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWN 357

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           TM +G  +  M   A   F QMPNKD+++WN MI      G + +A+ +F  M +RN  +
Sbjct: 358 TMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVS 417

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           WN++I  + +NG    A++   LM +     +  T    L++   +    +    H+L +
Sbjct: 418 WNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLV 477

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R GF  ++S        Y     G  L+   AR  F+ +  +D+VSW A+I  Y+++G+G
Sbjct: 478 RTGFISDSSPGNALISAYA--KCGRMLE---ARQVFDEMVVQDIVSWNALIDGYASNGNG 532

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +V  +F  M  +  +PDEIT V VLS CSHAGL+++G   FN M + Y  KP AEHY+C
Sbjct: 533 SEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTC 592

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L RAG+++EA  +V  M   + +  V GALLGACR+H +  +A    E+L EL+P 
Sbjct: 593 MVDLLGRAGRLREAFELVQGMQI-QPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPC 651

Query: 445 SSGAYVLSANVHAARGEWDE 464
            +  YVL +N+    G+WD+
Sbjct: 652 KASNYVLLSNICVEAGKWDD 671



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 185/400 (46%), Gaps = 46/400 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A +LF+EM + + VS  +M++    +  L +A  LF  MP  +RN V+ + M+ 
Sbjct: 24  SGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMP--RRNPVSWNTMMV 81

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
              + GRV++AR +FD +   N YSWT ++S Y +A ++   R L DRMP + K    + 
Sbjct: 82  ACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGE-KCAACYN 140

Query: 127 TVVLGCAHNG----LIAKLE------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           T++ G A NG     IA L+      ++SW ++  GL RN     + ++F +MP+KD+V+
Sbjct: 141 TMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVS 200

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN M+  YV AG++  AS  F+ +P  NV +W  +++ Y + G  G A +L + M +   
Sbjct: 201 WNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNV 260

Query: 237 -------------------------MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271
                                    MP E    S  T   G + +         L     
Sbjct: 261 VAWNVLLSGYVQFSQVEAAYNLFIEMP-EKNSISWTTMVSGFVRSGKLQEAKDVLSKMPS 319

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            ++  K    + +        ++ AR  F+ +  +D V W  MI  Y   G   +   LF
Sbjct: 320 DNVGAKTALMHGYLKSNL---IDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLF 376

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +M       D I++  +++ C+  G + K    F  M R
Sbjct: 377 QQM----PNKDMISWNTMIAGCAQGGQIRKAASIFRKMKR 412



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 160/364 (43%), Gaps = 54/364 (14%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A A+FR+  E           +    ++G++  AR++F+E+   NV S+ +++S      
Sbjct: 8   ASAVFRSNQE-----------LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHG 56

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
           ++ E RRLFD MP   +N VSW T+++ C+ +G +                       AR
Sbjct: 57  RLAEARRLFDEMP--RRNPVSWNTMMVACSQHGRVED---------------------AR 93

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEG 222
             F  MP ++  +W  M++ YV AG +  A EL + MP ++    +N MI  YA+NG   
Sbjct: 94  GLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFE 153

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A+ LL    Q    P+  +  S+L    G++ N     ++  + F  E       + + 
Sbjct: 154 DAIALL----QEMPAPDIVSWNSVLG---GLIRN---EEISRSVQFFDEMPDKDLVSWNL 203

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
           +   +    D++ A   F R+ + +V+SW  ++  Y   G   +   LF RM +      
Sbjct: 204 MLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNV--- 260

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            + +  +LS       VE     F  M            ++ +     R+G+++EA  V+
Sbjct: 261 -VAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSIS-----WTTMVSGFVRSGKLQEAKDVL 314

Query: 403 SKMP 406
           SKMP
Sbjct: 315 SKMP 318


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 283/523 (54%), Gaps = 44/523 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +   G +++A KLFDE    D VS  S++  +++  D+ +A+ +F  MP  QRNIVA 
Sbjct: 184 NMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMP--QRNIVAS 241

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LK 118
           ++MI    K G+V EA K+F+E+ E ++ SW++LISGY +    +E   +F  M    ++
Sbjct: 242 NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMR 301

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------ARE 164
           L  VV   +V+  CAH  ++   ++I    +  G+E     +NA+  +         A++
Sbjct: 302 LDEVVV-VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK 360

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F    N D ++WN+MI+  +  G++ +A  LF++MP++++ +W+A+I  YA++      
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLT------ 275
           + L + M   +  P+ET   S++++C     + +    HA   + G +    L       
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDM 480

Query: 276 -YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             KC C            V +A   F  +E K V SW A+I+  + +G   +   +F+ M
Sbjct: 481 YMKCGC------------VENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEM 528

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
             +G  P+EITF+GVL  C H GLV++GR  F  M   +G +P  +HY C+ D+L RAG 
Sbjct: 529 KNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGL 588

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           + EA +++  M P   D    GALLGAC+ HGD  M + +G +LIELQP   G +VL +N
Sbjct: 589 LNEAEKLIESM-PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSN 647

Query: 455 VHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           + A++G+W++  +VR  M+++ V K    S IE  G  H  LA
Sbjct: 648 IFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLA 690



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 168/411 (40%), Gaps = 83/411 (20%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTV 128
           +D + ++FD I   N + W +++  Y ++   ++   L+  M   +KN V     ++  V
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLM---VKNNVGPDNYTYPLV 147

Query: 129 VLGCA--------------------------HNGLI-------------------AKLEV 143
           V  CA                           N LI                     L+ 
Sbjct: 148 VQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDS 207

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +SW ++  G  +    + A+  F QMP ++IVA N+MI      G + +A +LFN M ++
Sbjct: 208 VSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEK 267

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAH 260
           ++ +W+A+I  Y +NG    A+ +   M  +    +E    S+L++C  +       + H
Sbjct: 268 DMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIH 327

Query: 261 ALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLD----------------VN 294
            L IR+G E   +L       Y            ++    LD                V 
Sbjct: 328 GLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVE 387

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F+ +  KD+VSW+A+I  Y+ H    +   LF  M     +PDE   V V+S C+
Sbjct: 388 KARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACT 447

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           H   +++G K  +   R  G K      + L D+  + G V+ A+ V + M
Sbjct: 448 HLAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM 497



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 117/297 (39%), Gaps = 63/297 (21%)

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           ++F+ +   N + WN M+  Y ++     A+ L  LM ++   P+  T   ++ +C   L
Sbjct: 96  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 155

Query: 255 ENMLA---HALAIRLGFE-----QETSLTYKCTC----------------HYVFWD---- 286
                   H   +++GF+     Q T +     C                  V W+    
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215

Query: 287 -WGFQLDVNSARLAFER-------------------------------LEAKDVVSWTAM 314
            +  + DV  A+L F++                               ++ KD+VSW+A+
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y  +G   +   +F  M  +G + DE+  V VLS C+H  +V+ G+    L+ R  G
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR-MG 334

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            +      + L  +   +G++ +A ++ +    H  D +   +++  C   G V  A
Sbjct: 335 IESYVNLQNALIHMYSGSGEIMDAQKLFNG--SHNLDQISWNSMISGCMKCGSVEKA 389



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 12/205 (5%)

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F     L +     ++  D+  Q+        F+R+E  +   W  M+ AY       + 
Sbjct: 74  FAASRLLKFSTDSPFIGLDYSLQI--------FDRIENSNGFMWNTMMRAYIQSNSAEKA 125

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             L+  M+K+   PD  T+  V+  C+   L+E G K  +      GF       + L +
Sbjct: 126 LLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLIN 184

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ-PSSS 446
           +    G +++A ++  + P    D V   ++L      GDV  A  I +++ +    +S+
Sbjct: 185 MYAVCGNMRDARKLFDESPV--LDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN 242

Query: 447 GAYVLSANVHAARGEWDEFAQVRKK 471
              VL   +      W  F ++ +K
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEK 267


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 170/520 (32%), Positives = 274/520 (52%), Gaps = 47/520 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++ +A KLF+ M + + VS  ++IT FL N D+  A   FR MPE     +  
Sbjct: 142 SGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLC- 200

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGN------VYSWTSLISGYFKARQVDEGRRLFDRM 115
            A+I G V+ G +D A  +  E   G+      V+++ +LI+GY +   V+E RRLFD +
Sbjct: 201 -ALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVI 259

Query: 116 PLKL-----------KNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGLE 154
           P              +NVVSW ++++     G I           + +  SW T+ +   
Sbjct: 260 PDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYV 319

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           + +  + A + F +MP+ D+++WN++I+     G++  A + F  MP +N+ +WN +I  
Sbjct: 320 QISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAG 379

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFE-- 269
           Y +N     A+KL + M      P++ T +S+++   G+++  L    H L  +      
Sbjct: 380 YEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDS 439

Query: 270 --QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
               + +T    C  +         V++  +  E    KDV++W AMI  Y++HG   + 
Sbjct: 440 PINNSLITMYSRCGAI---------VDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEA 490

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF  M +    P  ITF+ VL+ C+HAGLVE+G + F  M   YG +PR EH++ L D
Sbjct: 491 LELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVD 550

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           IL R GQ++EAM +++ M P + D  V GALLGACR+H +V +A    + LI L+P SS 
Sbjct: 551 ILGRQGQLQEAMDLINTM-PFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSA 609

Query: 448 AYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
            YVL  N++A  G+WD+   VR  M E+ VKK A +S ++
Sbjct: 610 PYVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 250/533 (46%), Gaps = 62/533 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++ EA  LFD M + D V+  SMI+ +++  ++ +A  LF  MP  +R++V+ + ++ 
Sbjct: 51  SGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMP--RRDVVSWNLIVS 108

Query: 67  GYVK---AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           GY     +  V+E R++F+ + + +  SW ++ISGY K  ++D+  +LF+ MP    N V
Sbjct: 109 GYFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP--EHNAV 166

Query: 124 SWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           S+  V+ G   NG           + + +  S   + +GL RN    LA     +  N D
Sbjct: 167 SYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNGELDLAAGILRECGNGD 226

Query: 174 ------IVAWNAMITAYVDAGNMAQASELFNLMP-------------QRNVWTWNAMIDR 214
                 + A+N +I  Y   G++ +A  LF+++P             +RNV +WN+M+  
Sbjct: 227 DGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMC 286

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL 274
           Y + G    A +L +     R +  +    + L SC   + NM   +   R     E   
Sbjct: 287 YVKAGDIVFARELFD-----RMVERDNCSWNTLISCYVQISNMEEASKLFR-----EMPS 336

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
               + + +      + D+N A+  FER+  K+++SW  +I  Y  +       +LF+ M
Sbjct: 337 PDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEM 396

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVE--KGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
              G +PD+ T   V+S     GLV+   G++   L+++     P +   + L  +  R 
Sbjct: 397 QLEGERPDKHTLSSVIS--VSTGLVDLYLGKQLHQLVTKT--VLPDSPINNSLITMYSRC 452

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE--RLIELQPSS-SGAY 449
           G + +A  V +++  + +D +   A++G    HG    A  + +  + +++ P+  +   
Sbjct: 453 GAIVDACTVFNEIKLY-KDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFIS 511

Query: 450 VLSANVHAARGE--WDEFAQVRKK--MERRVKKVASFSQIEVKGKDHTLLAPM 498
           VL+A  HA   E  W +F  +     +E RV+  AS   +++ G+   L   M
Sbjct: 512 VLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASL--VDILGRQGQLQEAM 562



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 160/375 (42%), Gaps = 57/375 (15%)

Query: 48  FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           + + P +Q N       +   +++GR+ EAR +FD +   +  +W S+ISGY + R++  
Sbjct: 33  YNSSPLNQSN-----KKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIAR 87

Query: 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
            R+LFD MP +  +VVSW  +V G                  C G   +   +  R  F 
Sbjct: 88  ARQLFDEMPRR--DVVSWNLIVSG---------------YFSCCG---SRFVEEGRRLFE 127

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP +D V+WN +I+ Y   G M QA +LFN MP+ N  ++NA+I  +  NG   +A+  
Sbjct: 128 LMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGF 187

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENM---LAHALAIRLGFEQETSLTYKCTCHYVF 284
                  R MP E   TS+     G++ N    LA  +    G   +         + + 
Sbjct: 188 F------RTMP-EHDSTSLCALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLI 240

Query: 285 WDWGFQLDVNSARLAFE-------------RLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
             +G +  V  AR  F+             R   ++VVSW +M++ Y   G       LF
Sbjct: 241 AGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELF 300

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            RM++     D  ++  ++S       +E+  K F  M       P    ++ +   L +
Sbjct: 301 DRMVER----DNCSWNTLISCYVQISNMEEASKLFREMP-----SPDVLSWNSIISGLAQ 351

Query: 392 AGQVKEAMRVVSKMP 406
            G +  A     +MP
Sbjct: 352 KGDLNLAKDFFERMP 366


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 259/516 (50%), Gaps = 43/516 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           TS F    K   +     E +  + ++   +I  ++R  D+  A  +F  M    ++ V 
Sbjct: 17  TSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDM--KVKSTVT 74

Query: 61  ESAMIDGYVK-AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            ++++  + K  G  + AR++F++I + N  S+  +++ ++    V + R  FD MPLK 
Sbjct: 75  WNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK- 133

Query: 120 KNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM 169
            +V SW T++   A  GL+ +             +SW+ M +G         A E F   
Sbjct: 134 -DVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAA 192

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P + ++ W AMIT Y+  G +  A  LF  M  R + TWNAMI  Y  NG     ++L  
Sbjct: 193 PMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFR 252

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCT 279
            M ++   PN  + TS+L  C  +    L    H L  +     +T       S+  KC 
Sbjct: 253 TMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCG 312

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
                       D+  A   F ++  KDVV W AMI  Y+ HG G +  RLF  M K G 
Sbjct: 313 ------------DLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGL 360

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           KPD ITFV VL  C+HAGLV+ G + FN M R +G + + EHY+C+ D+L RAG++ EA+
Sbjct: 361 KPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAV 420

Query: 400 RVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
            ++  MP  PH     + G LLGACR+H ++ +A++  + L+EL P+ +  YV  ANV+A
Sbjct: 421 DLIKSMPFKPHP---AIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYA 477

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           A+  WD  A +R+ M +  V K+  +S IE+    H
Sbjct: 478 AQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVH 513


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/522 (32%), Positives = 278/522 (53%), Gaps = 51/522 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++ EA  LF+ M + + VS  +M++ FL+N D+ +A   F+ MPE  R++ + 
Sbjct: 151 SGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPE--RDVTSL 208

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGN-------VYSWTSLISGYFKARQVDEGRRLFDR 114
           SA++ G ++   +D+A ++  + Y  N       V+++ +LI+GY +  +VDE + LFD+
Sbjct: 209 SALVSGLIQNSELDQAERILLD-YGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDK 267

Query: 115 MPLK-----------LKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGL 153
           +P              +NVVSW T+++     G +             +  SW TM +G 
Sbjct: 268 IPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGY 327

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                 + A   F +MP+ D ++WN MI+ Y  +G++  A + F  MPQ+N+ +WN++I 
Sbjct: 328 VHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIA 387

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFE- 269
            Y +NG    A+ L   M       +  T +S+L+   G+++    M  H L  +     
Sbjct: 388 GYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVIPD 447

Query: 270 ---QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGHGF 325
                  +T    C  +F           AR  F  ++  K+V+SW AMI  Y++HG+  
Sbjct: 448 VPLNNALITMYSRCGAIF----------EARTIFYEMKLQKEVISWNAMIGGYASHGYAT 497

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF  M     +P  ITF+ VL+ C+HAGLVE+GR+ F  M   YG +PR EH++ L
Sbjct: 498 EALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMVSDYGVEPRVEHFASL 557

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            DI+ R GQ++EA+ +++ M   E D  V GALLGA R+H +V MA    E L++L+P S
Sbjct: 558 VDIVGRQGQLEEALDLINSMTI-EPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDS 616

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
           S  Y+L  N++   G+WD  A++R  MER  +KK A+ S ++
Sbjct: 617 SVPYILLYNMYVDVGQWDNAAEIRSMMERNNIKKEAAISWVD 658



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 212/463 (45%), Gaps = 61/463 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F  TG++ EA  LFD++ + + V+  SMI+ +++  ++ KA  LF  MPE  R++V+ 
Sbjct: 55  SHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPE--RDVVSW 112

Query: 62  SAMIDGYVKA-GR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           + +I GYV   G+  ++E R +FD++ E    SW ++ISGY K  ++DE   LF+ MP  
Sbjct: 113 NLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMP-- 170

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQ 168
            KN VSW  +V G   NG + +           +V S + + +GL +N+    A    + 
Sbjct: 171 EKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLD 230

Query: 169 MPNKD------IVAWNAMITAYVDAGNMAQASELFNLMP-------------QRNVWTWN 209
             N        + A+N +I  Y   G + +A  LF+ +P             +RNV +WN
Sbjct: 231 YGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWN 290

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
            MI  Y + G   +A KL +       MP+  + +           N +       L  E
Sbjct: 291 TMIMCYVKAGDVISARKLFDQ------MPDRDSFSW----------NTMISGYVHVLDME 334

Query: 270 QETSLTYKC-TCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGH 323
           + ++L +K  +   + W+        S  L      FER+  K++VSW ++I  Y  +G 
Sbjct: 335 EASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKNGD 394

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                 LF +M   G K D  T   +LS  S    ++ G +   L+S+     P     +
Sbjct: 395 YIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKT--VIPDVPLNN 452

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L  +  R G + EA  +  +M   +++ +   A++G    HG
Sbjct: 453 ALITMYSRCGAIFEARTIFYEM-KLQKEVISWNAMIGGYASHG 494



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 167/358 (46%), Gaps = 43/358 (12%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           S    I+ F R   + +A ALF  +   +RN V  ++MI GYVK G + +ARK+FDE+ E
Sbjct: 49  SSNKKISHFTRTGRINEARALFDKL--ERRNTVTWNSMISGYVKRGEMTKARKLFDEMPE 106

Query: 87  GNVYSWTSLISGYFKARQ---VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            +V SW  +ISGY   R    ++EGR LFD+MP +             C           
Sbjct: 107 RDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPER-------------CC---------- 143

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +SW TM +G  +N     A   F  MP K+ V+WNAM++ ++  G++ +A E F  MP+R
Sbjct: 144 VSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPER 203

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AH 260
           +V + +A++    +N     A ++L L + +     E    +  T   G  +      A 
Sbjct: 204 DVTSLSALVSGLIQNSELDQAERIL-LDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQ 262

Query: 261 ALAIRLGF--EQETSLTYKCTCHYVFWDWGFQL-----DVNSARLAFERLEAKDVVSWTA 313
            L  ++ F  +Q    T +   + V W+          DV SAR  F+++  +D  SW  
Sbjct: 263 NLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNT 322

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           MI  Y +     +   LF +M      PD +++  ++S  + +G +E     F  M +
Sbjct: 323 MISGYVHVLDMEEASNLFHKM----PSPDTLSWNLMISGYAQSGSLELAHDFFERMPQ 376



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 180/410 (43%), Gaps = 69/410 (16%)

Query: 50  AMPESQRNIVAESAM------IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           AMP   +  V +S +      I  + + GR++EAR +FD++   N  +W S+ISGY K  
Sbjct: 33  AMPPRAKTSVEDSNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRG 92

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
           ++ + R+LFD MP +  +VVSW  ++ G                  C G       +  R
Sbjct: 93  EMTKARKLFDEMPER--DVVSWNLIISGYVS---------------CRG---KRFIEEGR 132

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
             F +MP +  V+WN MI+ Y   G M +A  LFN MP++N  +WNAM+  + +NG    
Sbjct: 133 NLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVR 192

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALAIRLGFEQETSLTYKCTCHY 282
           A++        + MP E   TS+     G+++N  L  A  I L +             Y
Sbjct: 193 AIEFF------KRMP-ERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAY 245

Query: 283 --VFWDWGFQLDVNSARLAFERLE-------------AKDVVSWTAMILAYSNHGHGFQV 327
             +   +G +  V+ A+  F+++               ++VVSW  MI+ Y   G     
Sbjct: 246 NTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISA 305

Query: 328 FRLFARMLKSGTKPDEITFV--GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
            +LF +M      PD  +F    ++S   H   +E+    F+ M       P    ++ +
Sbjct: 306 RKLFDQM------PDRDSFSWNTMISGYVHVLDMEEASNLFHKMP-----SPDTLSWNLM 354

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
                ++G ++ A     +MP  +++ V   +++     +G     DYIG
Sbjct: 355 ISGYAQSGSLELAHDFFERMP--QKNLVSWNSVIAGYEKNG-----DYIG 397


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 279/543 (51%), Gaps = 72/543 (13%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           +  A K F+ M+  +  + +++I    +   +  A A+++  P   +++ + ++M+ G  
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDP--LKSVPSRTSMLTGLA 332

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           + GR+D+A+ +FD+I+E NV SW ++I+GY +   VDE   LF+RMP +  N +SW  ++
Sbjct: 333 RYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR--NTISWAGMI 390

Query: 130 LGCAHNG----LIAKLEVISWTTM-------------CTGLER----------------- 155
            G A NG     +  L+ +    M             C+ +E                  
Sbjct: 391 AGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQ 450

Query: 156 ------NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                 NA+  L          R+ F +M  KD V++N+ ++A V      +A ++FN M
Sbjct: 451 FNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM 510

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA- 259
           P  +V +W  +I   A+      A+++   M   R +PN      ILT   G+  N+ A 
Sbjct: 511 PSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPN----PPILTILLGLSGNLGAP 566

Query: 260 ------HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
                 H +AI+LG +    +       Y      F+     +   F+ +E +D+ +W  
Sbjct: 567 QLGQQIHTIAIKLGMDSGLVVANALVSMY------FKCSSADSLKVFDSMEERDIFTWNT 620

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I  Y+ HG G +  R++  M+ +G  P+E+TFVG+L  CSH+GLV++G + F  MS  Y
Sbjct: 621 IITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDY 680

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G  P  EHY+C+ D+L RAG V+ A   +  MP  E D V+  ALLGAC++H +V +   
Sbjct: 681 GLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPI-EPDSVIWSALLGACKIHKNVEIGRR 739

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             E+L  ++PS++G YV+ +N+++++G WDE A+VRK M ER V K    S +++K K H
Sbjct: 740 AAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMH 799

Query: 493 TLL 495
           + +
Sbjct: 800 SFV 802



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 141/301 (46%), Gaps = 42/301 (13%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L +A  +F +MP   R+I+A ++MI  Y   G  D  R + D I  GN+ + T L+SGY 
Sbjct: 49  LHEAREVFDSMP--FRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYA 106

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
           +A +V + RR+FD M   ++N V+W  +V     NG I                      
Sbjct: 107 RAGRVRDARRVFDGM--GVRNTVAWNAMVTCYVQNGDIT--------------------- 143

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           LAR+ F  MP++D+ +WN M+T Y  +  M +A  LF  MP+RN  +W  MI  Y     
Sbjct: 144 LARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQ 203

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLT 275
            G A  +   M      P +    S+L++       G+LE++  H L  + GFE++  + 
Sbjct: 204 HGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESI--HVLVHKTGFERDVVVG 261

Query: 276 YKCTCHYVFWDWGFQLDVN---SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
                       G+  DVN   SA   FE + A++  +W+ +I A S  G     F ++ 
Sbjct: 262 TAILN-------GYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQ 314

Query: 333 R 333
           R
Sbjct: 315 R 315



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 164/391 (41%), Gaps = 66/391 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G+V++A ++FD M   + V+  +M+T +++N D+  A  LF AMP   R++ + 
Sbjct: 103 SGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMP--SRDVSSW 160

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-----DRMP 116
           + M+ GY  +  ++EAR +F+ + E N  SWT +ISGY    Q      +F     + M 
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNA---------------MTKL 161
            +  N+VS   V+    H G    LE I      TG ER+                M   
Sbjct: 221 PEQPNLVS---VLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDS 277

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A ++F  M  ++   W+ +I A   AG +  A  ++   P ++V +  +M+   AR G  
Sbjct: 278 AVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRI 337

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
             A     ++F     PN  +  +++T   G ++N +                       
Sbjct: 338 DDA----KILFDQIHEPNVVSWNAMIT---GYMQNEM----------------------- 367

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      V+ A   F R+  ++ +SW  MI  Y+ +G   Q       + + G  P
Sbjct: 368 -----------VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLP 416

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
              +       CS+   +E G++  +L  +A
Sbjct: 417 SLSSLTSSFFACSNIEALETGKQVHSLAVKA 447



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           ARE F  MP +DI+AWN+MI AY + G       L + +   N+ T   ++  YAR G  
Sbjct: 52  AREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARAGRV 111

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
             A ++ + M     +      T  + + +  L   L  A+  R      T LT  C   
Sbjct: 112 RDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQ 171

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY---SNHGHGFQVFRLFARMLKSG 338
            +            AR  FER+  ++ VSWT MI  Y     HG  + +FR    ML  G
Sbjct: 172 LM----------EEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRT---MLCEG 218

Query: 339 TKPDEITFVGVLSDCSHAG 357
             P++   V VLS   H G
Sbjct: 219 MTPEQPNLVSVLSAVRHLG 237


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/534 (31%), Positives = 263/534 (49%), Gaps = 73/534 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA +LFD M     VS  +MI+ +L N  + +A  LF  MP   RN V+   MI G
Sbjct: 69  GRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPA--RNDVSWLMMISG 126

Query: 68  YVKAGRVDEARKVFDE-------------------------------IYEGNVYSWTSLI 96
           Y+K  RV EAR++FD                                +   ++ SW ++I
Sbjct: 127 YMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMI 186

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI----------AKLEVISW 146
           +GY +A  +   +RLFD MP K  + VSWT +V G   NG +             +V++W
Sbjct: 187 TGYTRAGMMQVAQRLFDEMPEK--DTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAW 244

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            TM +G   +     A   F  MP++D+V+WN ++  YV  G+M  A+  F  MP+++  
Sbjct: 245 NTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEA 304

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALA 263
           +WN +I  Y   G    A+ LL+ M Q  + P++ T +  ++ C  +       + H   
Sbjct: 305 SWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCT 360

Query: 264 IRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           I+ GFE++        S+  KC              +  A   F+ +  +D V+W AMI 
Sbjct: 361 IKTGFERDALVMSSLISMYSKCGL------------ITEASQVFDLIVQRDTVTWNAMIA 408

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y+ HG   +   LF RM K G  PD  TF+ VLS C+H G + +G   F  M + +   
Sbjct: 409 TYAYHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLI 468

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
           PR++HYSC+ D+L R+G V +A     ++P   + +     L  +C  HGD+++ + + +
Sbjct: 469 PRSDHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQIN-AWETLFSSCNAHGDIQLGELVAK 527

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
            +++ +PS  G Y L +N++AA+G W   A VR  M E+ +KK    S IE+KG
Sbjct: 528 NVLQSRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKG 581



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 217/463 (46%), Gaps = 36/463 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V  A ++FDEMS+ +  +   MI+  +RN  L  A  +F  MP   RN V+ +A++ G
Sbjct: 7   GRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPF--RNSVSWAALLTG 64

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + GRV EAR++FD + + +V SW ++ISGY     VD  R LFD MP   +N VSW  
Sbjct: 65  YARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMP--ARNDVSWLM 122

Query: 128 VVLGCAHNGLIAKLEVI------SWTTMC----TGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++ G      + +   I        T++C    +G   +   K A + F +M   D+V+W
Sbjct: 123 MISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSW 182

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           NAMIT Y  AG M  A  LF+ MP+++  +W A++  Y +NG   AA K+   M     +
Sbjct: 183 NAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVL 242

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH-YVFWDWGFQLDVNSA 296
              T  +  + S        L  AL +         +++      YV      Q D++ A
Sbjct: 243 AWNTMMSGFVVS------ERLDDALRLFADMPDRDLVSWNTILQGYV-----QQGDMDGA 291

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F ++  KD  SW  +I  Y + G       L + M + G +PD+ T+   +S CS  
Sbjct: 292 TAWFRKMPEKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSL 347

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
             +  GR   ++ +   GF+  A   S L  +  + G + EA +V   +   +RD V   
Sbjct: 348 AALGCGRMV-HVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIV--QRDTVTWN 404

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAY---VLSANVH 456
           A++     HG    A  + +R+ +   S   A    VLSA  H
Sbjct: 405 AMIATYAYHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAH 447



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 141/330 (42%), Gaps = 44/330 (13%)

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158
           +F+A +V   RR+FD M                       ++  V +W  M +GL RN M
Sbjct: 3   HFRAGRVGAARRVFDEM-----------------------SERNVFTWNCMISGLVRNGM 39

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              AR  F  MP ++ V+W A++T Y   G +A+A ELF+ MP R+V +WNAMI  Y  N
Sbjct: 40  LTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWN 99

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC 278
           G    A  L ++      MP     + ++     M    +  A  I   F++  S T   
Sbjct: 100 GMVDRARDLFDV------MPARNDVSWLMMISGYMKRKRVREAREI---FDRAPSPT-TS 149

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            C+ +   +     +  A   F R++  D+VSW AMI  Y+  G      RLF  M    
Sbjct: 150 VCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEM---- 205

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            + D +++  ++      G V+   K F  M            ++ +      + ++ +A
Sbjct: 206 PEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMP-----DRDVLAWNTMMSGFVVSERLDDA 260

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           +R+ + MP  +RD V    +L      GD+
Sbjct: 261 LRLFADMP--DRDLVSWNTILQGYVQQGDM 288



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 58/252 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F  + ++ +A +LF +M   D VS  +++  +++  D+  A A FR MPE        
Sbjct: 249 SGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEK------- 301

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR-RLFDRMPLK-- 118
                        DEA             SW +LISGY      DEG   L   M     
Sbjct: 302 -------------DEA-------------SWNTLISGY-----KDEGALNLLSEMTQGGY 330

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             +  +W+  +  C+    +    ++   T+ TG ER+A+                   +
Sbjct: 331 RPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVM-----------------S 373

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           ++I+ Y   G + +AS++F+L+ QR+  TWNAMI  YA +G    A+ L + M +  F P
Sbjct: 374 SLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSP 433

Query: 239 NETTCTSILTSC 250
           +  T  S+L++C
Sbjct: 434 DHATFLSVLSAC 445



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 23/250 (9%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNET 241
           A+  AG +  A  +F+ M +RNV+TWN MI    RNG    A  + + M F+     N  
Sbjct: 2   AHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFR-----NSV 56

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           +  ++LT          A  L  R+     + +++        W+ G    V+ AR  F+
Sbjct: 57  SWAALLTGYARCGRVAEARELFDRM--PDRSVVSWNAMISGYLWN-GM---VDRARDLFD 110

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            + A++ VSW  MI  Y       +   +F R       P       +LS  +  G ++ 
Sbjct: 111 VMPARNDVSWLMMISGYMKRKRVREAREIFDR----APSPTTSVCNALLSGYAEHGYLKD 166

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
               F  M       P    ++ +     RAG ++ A R+  +MP  E+D V   A++  
Sbjct: 167 AEDLFGRMQ-----TPDLVSWNAMITGYTRAGMMQVAQRLFDEMP--EKDTVSWTAIVRG 219

Query: 422 CRLHGDVRMA 431
              +GDV  A
Sbjct: 220 YLQNGDVDAA 229


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/549 (30%), Positives = 278/549 (50%), Gaps = 78/549 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           T  +  A K F+ M + +  + ++MI        +  A A++   P   ++I   +A+I 
Sbjct: 273 TSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDP--VKSIACRTALIT 330

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G  + GR+D+AR +F++I E  V SW +LI+GY +   V+E + LFD+MP +  N +SW 
Sbjct: 331 GLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR--NTISWA 388

Query: 127 TVVLGCAHNG-------LIAKLE-------VISWTTM---C-------TGLERNAMT--- 159
            ++ G A NG       L+ +L        + S T++   C       TG + +++    
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 160 ----------------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
                                 + AR+ F +M  KDIV+WN+ + A V    + +A   F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           + M  R+  +W  +I  YA       AM     MF    +PN    T +L  C  +  + 
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568

Query: 258 LA---HALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
           +    H +AI+LG + E        S+ +KC C               +R  F+ +E +D
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGC-------------ADSRRIFDLMEERD 615

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           + +W  +I  Y+ HG G +  +++  M  +G  P+E+TFVG+L+ CSHAGLV++G K F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            MS+ YG  P  EHY+C+ D+L R G V+ A + +  MP  E D V+  ALLGAC++H +
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPI-EPDTVIWSALLGACKIHKN 734

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
             +     E+L  ++PS++G YV+ +N++++ G W E A+VRK M+++ V K    S  +
Sbjct: 735 AEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQ 794

Query: 487 VKGKDHTLL 495
           +K K H+ +
Sbjct: 795 IKDKMHSFV 803



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 176/384 (45%), Gaps = 45/384 (11%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C++ I    R   + +A  +F AMP  +R+I+A ++MI  Y   G  D AR ++D I  G
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMP--RRDIIAWNSMISAYCHNGMPDAARDLYDAISGG 94

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N+ +   L+SGY +  +V E RR+FD M    +N V+W  ++     NG I         
Sbjct: 95  NMRTGAILLSGYGRLGRVLEARRVFDGM--LERNTVAWNAMISCYVQNGDIT-------- 144

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                        +AR  F  MP++D+ +WN+M+T Y  +  M  A  LF  MP+RN+ +
Sbjct: 145 -------------MARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVS 191

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-----LENMLAHAL 262
           W  MI  Y R    G A  +   M +   +P+++   S L++ +G+     LE++    L
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL--RVL 249

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           A++ GFE++  +       Y   D      +++A   FE +  ++  +W+ MI A S   
Sbjct: 250 ALKTGFERDVVIGTAILNVYSR-DTSV---LDTAIKFFESMIERNEYTWSTMIAALS--- 302

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
           HG ++    A   +   K        +++  +  G ++  R  F  +      +P    +
Sbjct: 303 HGGRIDAAIAVYERDPVKSIACR-TALITGLAQCGRIDDARILFEQIP-----EPIVVSW 356

Query: 383 SCLADILRRAGQVKEAMRVVSKMP 406
           + L     + G V EA  +  KMP
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMP 380



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 189/450 (42%), Gaps = 93/450 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +G  G+V EA ++FD M + + V+  +MI+ +++N D+  A  LF AMP   R++ + 
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP--SRDVSSW 161

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP----- 116
           ++M+ GY  + ++ +AR +F+++ E N+ SWT +ISGY +     +   +F +M      
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 117 ---------------------------LKLK--------------NVVSWTTVVLGCAHN 135
                                      L LK              NV S  T VL  A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 136 GLIAKLE--VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
              + +E    +W+TM   L        A   + + P K I    A+IT     G +  A
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDA 341

Query: 194 -------------------------------SELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                                           ELF+ MP RN  +W  MI  YA+NG   
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCT 279
            A+ LL  + +S  +P+ ++ TSI  +C  ++        H+LA+++G +  +       
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF-----A 456

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C+ +   +G   ++  AR  F R+  KD+VSW + + A   +    +    F  ML    
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR-- 514

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
             D++++  ++S  +HA    +    F  M
Sbjct: 515 --DDVSWTTIISAYAHAEQSNEAMGAFKTM 542



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 181/420 (43%), Gaps = 74/420 (17%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G  G+V EA ++FD M + D ++  SMI+ +  N     A  L+ A+  S  N+   + 
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAI--SGGNMRTGAI 101

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++ GY + GRV EAR+VFD + E N  +W ++IS Y +   +   RRLFD MP   ++V 
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP--SRDVS 159

Query: 124 SWTTVVLGCAHN-------GLIAKL---EVISWTTMCTGLERNAMTKLAREYFVQM---- 169
           SW +++ G  H+        L  K+    ++SWT M +G  R      A + F +M    
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 170 --PN---------------------------------KDIVAWNAMITAYV-DAGNMAQA 193
             P+                                 +D+V   A++  Y  D   +  A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            + F  M +RN +TW+ MI   +  G   AA+ +       + +   T   + L  C G 
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE-RDPVKSIACRTALITGLAQC-GR 337

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWD---WGFQLD--VNSARLAFERLEAKDV 308
           +++        R+ FEQ            V W+    G+  +  VN A+  F+++  ++ 
Sbjct: 338 IDDA-------RILFEQIPEPI------VVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           +SW  MI  Y+ +G   +   L   + +SG  P   +   +   CS+   +E G +  +L
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 16/216 (7%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
            +LEV   +     L R      ARE F  MP +DI+AWN+MI+AY   G    A +L++
Sbjct: 30  GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD 89

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            +   N+ T   ++  Y R G    A ++ + M +   +      +  + + +  +   L
Sbjct: 90  AISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRL 149

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             A+  R      + LT  C            L +  AR  FE++  +++VSWT MI  Y
Sbjct: 150 FDAMPSRDVSSWNSMLTGYC----------HSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 319 S---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
               NHG  + +   F +M + G  PD+  F   LS
Sbjct: 200 GRIENHGKAWDI---FCKMHREGLLPDQSNFASALS 232


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/549 (30%), Positives = 278/549 (50%), Gaps = 78/549 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           T  +  A K F+ M + +  + ++MI        +  A A++   P   ++I   +A+I 
Sbjct: 273 TSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDP--VKSIACRTALIT 330

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G  + GR+D+AR +F++I E  V SW +LI+GY +   V+E + LFD+MP +  N +SW 
Sbjct: 331 GLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR--NTISWA 388

Query: 127 TVVLGCAHNG-------LIAKLE-------VISWTTM---C-------TGLERNAMT--- 159
            ++ G A NG       L+ +L        + S T++   C       TG + +++    
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 160 ----------------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
                                 + AR+ F +M  KDIV+WN+ + A V    + +A   F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           + M  R+  +W  +I  YA       AM     MF    +PN    T +L  C  +  + 
Sbjct: 509 DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568

Query: 258 LA---HALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
           +    H +AI+LG + E        S+ +KC C               +R  F+ +E +D
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGC-------------ADSRRIFDLMEERD 615

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           + +W  +I  Y+ HG G +  +++  M  +G  P+E+TFVG+L+ CSHAGLV++G K F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            MS+ YG  P  EHY+C+ D+L R G V+ A + +  MP  E D V+  ALLGAC++H +
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPI-EPDTVIWSALLGACKIHKN 734

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
             +     E+L  ++PS++G YV+ +N++++ G W E A+VRK M+++ V K    S  +
Sbjct: 735 AEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQ 794

Query: 487 VKGKDHTLL 495
           +K K H+ +
Sbjct: 795 IKDKMHSFV 803



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 176/384 (45%), Gaps = 45/384 (11%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C++ I    R   + +A  +F AMP  +R+I+A ++MI  Y   G  D AR ++D I  G
Sbjct: 37  CSARIRDLGRLGRVGEAREVFDAMP--RRDIIAWNSMISAYCHNGMPDAARDLYDAISGG 94

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N+ +   L+SGY +  +V E RR+FD M    +N V+W  ++     NG I         
Sbjct: 95  NMRTGAILLSGYGRLGRVLEARRVFDGM--LERNTVAWNAMISCYVQNGDIT-------- 144

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                        +AR  F  MP++D+ +WN+M+T Y  +  M  A  LF  MP+RN+ +
Sbjct: 145 -------------MARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVS 191

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-----LENMLAHAL 262
           W  MI  Y R    G A  +   M +   +P+++   S L++ +G+     LE++    L
Sbjct: 192 WTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL--RVL 249

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           A++ GFE++  +       Y   D      +++A   FE +  ++  +W+ MI A S   
Sbjct: 250 ALKTGFERDVVIGTAILNVYSR-DTSV---LDTAIKFFESMIERNEYTWSTMIAALS--- 302

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
           HG ++    A   +   K        +++  +  G ++  R  F  +      +P    +
Sbjct: 303 HGGRIDAAIAVYERDPVKSIACR-TALITGLAQCGRIDDARILFEQIP-----EPIVVSW 356

Query: 383 SCLADILRRAGQVKEAMRVVSKMP 406
           + L     + G V EA  +  KMP
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMP 380



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 190/451 (42%), Gaps = 95/451 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +G  G+V EA ++FD M + + V+  +MI+ +++N D+  A  LF AMP   R++ + 
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP--SRDVSSW 161

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP----- 116
           ++M+ GY  + ++ +AR +F+++ E N+ SWT +ISGY +     +   +F +M      
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 117 ---------------------------LKLK--------------NVVSWTTVVLGCA-- 133
                                      L LK              NV S  T VL  A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 134 -HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
               +I + E  +W+TM   L        A   + + P K I    A+IT     G +  
Sbjct: 282 FFESMIERNEY-TWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDD 340

Query: 193 A-------------------------------SELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A                                ELF+ MP RN  +W  MI  YA+NG  
Sbjct: 341 ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKC 278
             A+ LL  + +S  +P+ ++ TSI  +C  ++        H+LA+++G +  +      
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF----- 455

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            C+ +   +G   ++  AR  F R+  KD+VSW + + A   +    +    F  ML   
Sbjct: 456 ACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR- 514

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
              D++++  ++S  +HA    +    F  M
Sbjct: 515 ---DDVSWTTIISAYAHAEQSNEAMGAFKTM 542



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 181/420 (43%), Gaps = 74/420 (17%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            G  G+V EA ++FD M + D ++  SMI+ +  N     A  L+ A+  S  N+   + 
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAI--SGGNMRTGAI 101

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++ GY + GRV EAR+VFD + E N  +W ++IS Y +   +   RRLFD MP   ++V 
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP--SRDVS 159

Query: 124 SWTTVVLGCAHN-------GLIAKL---EVISWTTMCTGLERNAMTKLAREYFVQM---- 169
           SW +++ G  H+        L  K+    ++SWT M +G  R      A + F +M    
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 170 --PN---------------------------------KDIVAWNAMITAYV-DAGNMAQA 193
             P+                                 +D+V   A++  Y  D   +  A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            + F  M +RN +TW+ MI   +  G   AA+ +       + +   T   + L  C G 
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE-RDPVKSIACRTALITGLAQC-GR 337

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWD---WGFQLD--VNSARLAFERLEAKDV 308
           +++        R+ FEQ            V W+    G+  +  VN A+  F+++  ++ 
Sbjct: 338 IDDA-------RILFEQIPEPI------VVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           +SW  MI  Y+ +G   +   L   + +SG  P   +   +   CS+   +E G +  +L
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 16/216 (7%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
            +LEV   +     L R      ARE F  MP +DI+AWN+MI+AY   G    A +L++
Sbjct: 30  GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD 89

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            +   N+ T   ++  Y R G    A ++ + M +   +      +  + + +  +   L
Sbjct: 90  AISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRL 149

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             A+  R      + LT  C            L +  AR  FE++  +++VSWT MI  Y
Sbjct: 150 FDAMPSRDVSSWNSMLTGYC----------HSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 319 S---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
               NHG  + +   F +M + G  PD+  F   LS
Sbjct: 200 GRIENHGKAWDI---FCKMHREGLLPDQSNFASALS 232


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/536 (31%), Positives = 273/536 (50%), Gaps = 56/536 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A+++F +M   D VS  SMI+ ++ N  + +A  +F  M    +++V+ + +I G
Sbjct: 117 GDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGM--VLKDVVSWNLVIAG 174

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            V  G+VD A + F E+   ++ SWT++ISG   A ++ E R LF+ MP++  +V +W T
Sbjct: 175 LVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVR--DVRAWNT 232

Query: 128 VVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQMPNK----- 172
           ++ G   NG I   EV+          SW  M  GL RN   + A   FV+MP K     
Sbjct: 233 MIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLFVEMPQKCRRSW 292

Query: 173 --------------------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                                     D V+W  +I  Y + G +  A  +F LMP R+  
Sbjct: 293 NSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDAT 352

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
            WN +I     N      +K    M +    P+E T TS+LT C  +    L    HA  
Sbjct: 353 AWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQV 412

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            + GF    +++      Y         + NSA L F  + + D +SW ++I   +++G+
Sbjct: 413 TKTGFNYFVAVSNAMVTLYARCG-----NSNSALLLFSAMRSHDFISWNSIICGLAHNGN 467

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +   +F +M     KP+ ITFVGVLS CSHAGLV++G+  F+ M      +P  EHY+
Sbjct: 468 GVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYT 527

Query: 384 CLADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           C+ D+L R G + EAM  + +M  +  E    V GA+LGACR+H ++++ +  GER++E+
Sbjct: 528 CIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNMQVGEIAGERILEI 587

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +P +SG Y++ A ++ + G+ ++  +V  +M E+ VKK  + S +EV G  H  L+
Sbjct: 588 EPHNSGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLS 643



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 223/468 (47%), Gaps = 36/468 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G  +EA  LFDEM Q + V+  +MI  + +N    +  +LF  MPE  R+I + + MI 
Sbjct: 54  NGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPE--RDIFSYNTMIA 111

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +K G ++ A ++F ++   +V SW S+ISGY     + E  R+F  M   LK+VVSW 
Sbjct: 112 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGM--VLKDVVSWN 169

Query: 127 TVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            V+ G    G +   E          + SWTTM +GL        AR  F  MP +D+ A
Sbjct: 170 LVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRA 229

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI  Y++ G +     LF  MPQR+  +WN MI+   RN     AM+L   M Q   
Sbjct: 230 WNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLFVEMPQK-- 287

Query: 237 MPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
                +  SI+    G++ N L   AHA   +  F    S T     ++   + G   +V
Sbjct: 288 --CRRSWNSIVF---GLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYF---ETG---EV 336

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++A   FE + A+D  +W  +I     + HG +  + F +M + G  PDE TF  VL+ C
Sbjct: 337 DTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTIC 396

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S    +  GR+    +++  GF       + +  +  R G    A+ + S M  H  D +
Sbjct: 397 SDLPTLHLGRQIHAQVTKT-GFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSH--DFI 453

Query: 414 VLGALLGACRLHGDVRMADYIGERL--IELQPSS-SGAYVLSANVHAA 458
              +++     +G+   A  + E++  I+++P+  +   VLSA  HA 
Sbjct: 454 SWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAG 501



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 33/235 (14%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N+    S IS   +    +E + LFD MP +  N V++  ++ G   NG   +       
Sbjct: 40  NLKPLNSRISDCMRNGFTEEAQMLFDEMPQR--NTVTYNAMIRGYFQNGHFGE------- 90

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                             F +MP +DI ++N MI   +  G++  ASE+F  MP R+V +
Sbjct: 91  --------------GVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVS 136

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           WN+MI  Y  NG  G A+++    F    + +  +   ++    G+ +  LA      +G
Sbjct: 137 WNSMISGYVSNGLIGEALRV----FSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMG 192

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                S T   +             +  AR  FE +  +DV +W  MI  Y  +G
Sbjct: 193 TRDIASWTTMIS------GLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYIENG 241


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 162/442 (36%), Positives = 240/442 (54%), Gaps = 35/442 (7%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +I   +++ID Y K G   V  ARKVF+ + E +  SW S+I G  K  ++ E RRLFD 
Sbjct: 149 DIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDE 208

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP +  + VSW T++ G    G                 E NA    A E F +MP +++
Sbjct: 209 MPER--DTVSWNTILDGYVKAG-----------------EMNA----AFELFEKMPARNV 245

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+W+ M+  Y  AG+M  A  LF+ MP +N+  W  MI  YA  G    A+ L N M ++
Sbjct: 246 VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA 305

Query: 235 RFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
               ++ T  SIL++C   G+L      HA   R  F+  T ++      Y         
Sbjct: 306 GLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCG----- 360

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            + +A   F  +  KDVVSW A+I   + HGHG +  +LF+RM   G  PD++TFVGVL 
Sbjct: 361 SLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLC 420

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+HAG V++G   F+ M R YG  P  EHY C+ D+L R G++KEA R+V  MP  E +
Sbjct: 421 ACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPL-EPN 479

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
            ++ G LLGACR+H    +A+ + +RL++ + S SG   + +N++AA G+WD FA +R +
Sbjct: 480 AIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLR 539

Query: 472 MER-RVKKVASFSQIEVKGKDH 492
           M+   ++K +  S IEV  + H
Sbjct: 540 MKSTSIQKPSGGSSIEVDDEVH 561



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 143/273 (52%), Gaps = 33/273 (12%)

Query: 2   SQFGC-TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           S F C    V  A K+F+ M++ D VS  SMI   ++  +L +A  LF  MPE  R+ V+
Sbjct: 159 SYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPE--RDTVS 216

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            + ++DGYVKAG ++ A ++F+++   NV SW++++ GY KA  +D  R LFD+MP  +K
Sbjct: 217 WNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMP--VK 274

Query: 121 NVVSWTTVVLGCAHNGLI------------AKLE-----VISWTTMCT-----GLERNAM 158
           N+V WT ++ G A  GL             A L+     VIS  + C      GL +   
Sbjct: 275 NLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVH 334

Query: 159 TKLAREYF-VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
             + R  F    P       NA+I  Y   G++  A  +F+ M +++V +WNA+I   A 
Sbjct: 335 ASIERTRFKCSTP-----VSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAM 389

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +G    A++L + M    F+P++ T   +L +C
Sbjct: 390 HGHGEKALQLFSRMKGEGFVPDKVTFVGVLCAC 422



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 21/233 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I A+     M  A  +FN +   +V  +N +I  + RN     A  +   M  S    +
Sbjct: 55  LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114

Query: 240 ETTCTSILTSCEG-----MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-V 293
             T   +L +C G     ++E  + HA   ++GF  +  +       Y    +   LD V
Sbjct: 115 NFTYPFLLKACSGKVWVRVVE--MIHAQVEKMGFCLDIFVPNSLIDSY----FKCGLDGV 168

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +AR  FE +  +D VSW +MI      G   +  RLF  M     + D +++  +L   
Sbjct: 169 AAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM----PERDTVSWNTILDGY 224

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             AG +    + F  M            +S +     +AG +  A  +  KMP
Sbjct: 225 VKAGEMNAAFELFEKMP-----ARNVVSWSTMVLGYSKAGDMDMARILFDKMP 272


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 175/479 (36%), Positives = 250/479 (52%), Gaps = 32/479 (6%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           +  A  LF  M E  R+ ++ + MI GYV+ G +D AR+  D + E  V +W ++ISGY 
Sbjct: 210 MAAARKLFDEMTE--RDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYV 267

Query: 101 KARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT----GLE 154
                 E   +F +M L     +  ++T+V+  CA+ G     + +    + T     L+
Sbjct: 268 HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLD 327

Query: 155 -----RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                 NA+  L         AR+ F QMP KD+V+WNA+++ YV+AG + +A   F  M
Sbjct: 328 FSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEM 387

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENM 257
           P+RN+ TW  MI   A+NG    ++KL N M    F P +      + +C     ++   
Sbjct: 388 PERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGR 447

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             HA  +RLGF+  +SL+       ++   G    V +A   F  +   D VSW AMI A
Sbjct: 448 QLHAQLVRLGFD--SSLSAGNALITMYAKCGV---VEAAHCLFLTMPYLDSVSWNAMIAA 502

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
              HGHG Q   LF  MLK    PD ITF+ VLS CSHAGLVE+G + F  MS  YG  P
Sbjct: 503 LGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICP 562

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
             +HY+ + D+L RAG+  EA  ++  MP  E    +  ALL  CR+HG++ +     ER
Sbjct: 563 GEDHYARMIDLLCRAGKFSEAKDMIETMPV-EPGPPIWEALLAGCRIHGNMDLGIQAAER 621

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           L EL P   G YVL +N++A  G WD+ A+VRK M ++ VKK    S IEV+ K H  L
Sbjct: 622 LFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFL 680



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 189/456 (41%), Gaps = 59/456 (12%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA- 71
           A  LFDE+ QPD V+  ++I       +   A  +F A P   R+ V  +AMI GY    
Sbjct: 69  AHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNN 128

Query: 72  ---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
              G ++  R +    +  + +++TS++     A  V++ ++        +K+   + T 
Sbjct: 129 DGFGAIELFRDLLRNGFRPDNFTFTSVLGAL--ALIVEDEKQCQQIHCAVVKSGSGFVTS 186

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
           VL        A L V         +  +++   AR+ F +M  +D ++W  MI  YV  G
Sbjct: 187 VLN-------ALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNG 239

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A +  + M ++ V  WNAMI  Y  +G    A+++   M+      +E T TS+L+
Sbjct: 240 ELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLS 299

Query: 249 SCEG---MLENMLAHALAIRLGFEQETSLTYKCTCH----YVFWDWGFQLDVNSARLAFE 301
           +C      L     HA  +R   E   SL +  + +     ++W  G    V+ AR  F 
Sbjct: 300 ACANAGFFLHGKQVHAYILRT--EPRPSLDFSLSVNNALATLYWKCG---KVDEARQVFN 354

Query: 302 RLEAKDVVSWTAMILAYSN-------------------------------HGHGFQVFRL 330
           ++  KD+VSW A++  Y N                               +G G +  +L
Sbjct: 355 QMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKL 414

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RM   G +P +  F G +  C+    +  GR+    + R  GF       + L  +  
Sbjct: 415 FNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYA 473

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + G V+ A  +   MP    D V   A++ A   HG
Sbjct: 474 KCGVVEAAHCLFLTMP--YLDSVSWNAMIAALGQHG 507


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 169/524 (32%), Positives = 275/524 (52%), Gaps = 32/524 (6%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNIVAESAMIDGY 68
           ++ A  LFD + +P  VS   +I  ++ N     A ALF + + +   +      ++ G 
Sbjct: 65  LQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGC 124

Query: 69  VKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + G + E +++   +    +  + +  +SL+S Y K  +++  R++FDRM  + K+VVS
Sbjct: 125 ARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRM--EDKDVVS 182

Query: 125 WTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           W +++ G A  G I           + +  SWT +  GL ++   + AR+ F +MP ++ 
Sbjct: 183 WNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNS 242

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+WNAMI  Y+ AG+   A ELF+ MP+R++ TWN+MI  Y RN     A+KL  +M + 
Sbjct: 243 VSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLRE 302

Query: 235 RFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              PN TT    +++  GM+        H+  ++ GF+ +  L       Y         
Sbjct: 303 DISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCG----- 357

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            V SA   F  +  K +  WT++I+    HG   Q   LF  M ++G KP  ITF+GVL+
Sbjct: 358 SVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLN 417

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAG  E   + F +M+  YG KP  EHY CL D+L RAG ++EA   + +MP  + +
Sbjct: 418 ACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPI-KAN 476

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
            V+  +LL   R HG++RM +Y  + LI+L P ++G YV+ +N++AA G W++  QVR+ 
Sbjct: 477 KVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREM 536

Query: 472 MERRVKKV-ASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           M+++  K     S IE +G  H  +      P  E  Y+ L E+
Sbjct: 537 MKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEM 580



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 179/399 (44%), Gaps = 55/399 (13%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G+++   K+FD M   D VS  S+I  + R  ++  A  +F  MPE  ++  +
Sbjct: 156 VSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPE--KDSFS 213

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            + +IDG  K+G+++ AR VFD +   N  SW ++I+GY KA   +  + LFD+MP   +
Sbjct: 214 WTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMP--ER 271

Query: 121 NVVSWTTVVLGCAHNGLIAK----LEVI-------SWTTM------CTGLERNAMTKLAR 163
           ++V+W +++ G   N    K     EV+       ++TT+       +G+      +   
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVH 331

Query: 164 EYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            Y V+   K D V    +I  Y   G++  A  +F  +P++ +  W ++I     +G   
Sbjct: 332 SYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVE 391

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS-----LTYK 277
             ++L + M ++   P+  T   +L +C        +HA     GF ++       +TY 
Sbjct: 392 QTLELFDEMCRTGLKPHAITFIGVLNAC--------SHA-----GFAEDAHRYFKMMTYD 438

Query: 278 CTCHYVFWDWGFQLDV-------NSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFR 329
                    +G  +DV         A+   ER+  K + V WT+++     HG+     R
Sbjct: 439 YGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGN----IR 494

Query: 330 L--FARMLKSGTKPDEITFVGVLSDC-SHAGLVEKGRKT 365
           +  +A        PD      +LS+  + AGL EK R+ 
Sbjct: 495 MGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQV 533



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 103/252 (40%), Gaps = 36/252 (14%)

Query: 180 MITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           ++  Y D    N+  A  LF+ + +  + +WN +I  Y  N     A+ L   +    F+
Sbjct: 53  LLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFV 111

Query: 238 PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDW 287
           P+  T   +L  C     + E    H L +++GF  +        S+  KC         
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCG-------- 163

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++   R  F+R+E KDVVSW ++I  Y+  G       +F  M     + D  ++ 
Sbjct: 164 ----EIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEM----PEKDSFSWT 215

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            ++   S +G +E  R  F+ M         +  ++ + +   +AG    A  +  +MP 
Sbjct: 216 ILIDGLSKSGKLEAARDVFDRMPIR-----NSVSWNAMINGYMKAGDSNTAKELFDQMP- 269

Query: 408 HERDHVVLGALL 419
            ER  V   +++
Sbjct: 270 -ERSLVTWNSMI 280


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 243/463 (52%), Gaps = 49/463 (10%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L +A+ LF  +PE   + V+ + M+  YV+   ++ A+  F+++   +  SW ++I+G+ 
Sbjct: 23  LKEAQELFVKIPEP--DAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFA 80

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
           + +Q+D+ R LF  MP K  NVV+W  ++ G                  C  L+      
Sbjct: 81  QNQQMDKARDLFLIMPTK--NVVTWNAMISGYVE---------------CGDLDS----- 118

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A + F + P K +VAW AMIT Y+  G +  A  LF  MP++N+ TWNAMI  Y  N  
Sbjct: 119 -ALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHR 177

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETS---- 273
               +KL   M      PN +T +S L  C  +    L    H L  +     +T+    
Sbjct: 178 AEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTS 237

Query: 274 -LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            ++  C C  +   W            F ++  +DVV+W AMI  Y+ HG G +   LF 
Sbjct: 238 LISMYCKCGVLEDGWKL----------FVQVPRRDVVTWNAMISGYAQHGEGKKALGLFD 287

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M++ G KPD ITFV VL  C+HAG  + G K F+ M++ YG   + +HY+C+ D+L RA
Sbjct: 288 EMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRA 347

Query: 393 GQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           G++ EA+ ++ KMP  PH     V G LLGACR+H +  MA++  ++L+ L P+S+  YV
Sbjct: 348 GKLVEAVDLIEKMPFKPHA---AVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYV 404

Query: 451 LSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDH 492
             ANV+AA   WD  A+VRK M+  +V K   +S IEVK   H
Sbjct: 405 QLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAH 447



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 144/290 (49%), Gaps = 49/290 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--------------- 52
           GK+KEA +LF ++ +PD VS  +M++ ++RN ++ +A+A F  MP               
Sbjct: 21  GKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFA 80

Query: 53  ESQ--------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
           ++Q              +N+V  +AMI GYV+ G +D A K+F++    +V +WT++I+G
Sbjct: 81  QNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITG 140

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN----------------GLIAKLE 142
           Y K  ++    RLF++MP   KN+V+W  ++ G   N                G+     
Sbjct: 141 YMKLGRIGLAERLFEKMP--EKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSS 198

Query: 143 VISWTTM-CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +S   + C+ L    + +   +   + P   D  A  ++I+ Y   G +    +LF  +
Sbjct: 199 TLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQV 258

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           P+R+V TWNAMI  YA++G    A+ L + M +    P+  T  ++L +C
Sbjct: 259 PRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMAC 308



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 20/302 (6%)

Query: 143 VISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
            ++W ++  G+ ++    K A+E FV++P  D V++N M++ YV   NM +A   F  MP
Sbjct: 6   TVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMP 65

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            ++  +WN MI  +A+N     A  L  L+  ++ +       S    C G L++ L   
Sbjct: 66  IKDTPSWNTMITGFAQNQQMDKARDLF-LIMPTKNVVTWNAMISGYVEC-GDLDSAL--K 121

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           L  +  F+   + T   T +      G       A   FE++  K++V+W AMI  Y  +
Sbjct: 122 LFEKAPFKSVVAWTAMITGYMKLGRIGL------AERLFEKMPEKNLVTWNAMIAGYIEN 175

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
                  +LF  M+  G +P+  T    L  CS    ++ GR+   L+ ++    P  + 
Sbjct: 176 HRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS----PLCDD 231

Query: 382 YSC---LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            +    L  +  + G +++  ++  ++P   RD V   A++     HG+ + A  + + +
Sbjct: 232 TTAGTSLISMYCKCGVLEDGWKLFVQVP--RRDVVTWNAMISGYAQHGEGKKALGLFDEM 289

Query: 439 IE 440
           IE
Sbjct: 290 IE 291


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 253/468 (54%), Gaps = 47/468 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
           SA++D Y K G V++A++VFDE+ + NV SW SLI+ + +     E   +F  M      
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250

Query: 116 --PLKLKNVVS----WTTVVLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLARE 164
              + L +V+S     + + +G   +G + K +     +I          + +  K AR 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F  MP ++++A  +MI+ Y  A +   A  +F  M +RNV +WNA+I  Y +NG    A
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET--------- 272
           + L  L+ +    P   +  +IL +C  + E    M AH   ++ GF+ ++         
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430

Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                +  KC C            V    L F ++  +D VSW AMI+ ++ +G+G +  
Sbjct: 431 NSLIDMYVKCGC------------VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  ML+SG KPD IT +GVLS C HAG VE+GR  F+ M+R +G  P  +HY+C+ D+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG ++EA  ++ +M P + D V+ G+LL AC++H ++ +  Y+ E+L+E++PS+SG 
Sbjct: 539 LGRAGFLEEAKSMIEEM-PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597

Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           YVL +N++A  G+W++   VRK M +  V K    S I+++G DH  +
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 188/429 (43%), Gaps = 85/429 (19%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I  ++ +ID Y K G +++ R+VFD++ + N+Y+W S+++G  K   +DE   LF  MP 
Sbjct: 55  IFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP- 113

Query: 118 KLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMTK 160
             ++  +W ++V G A +                  ++ +    S  + C+GL  N M K
Sbjct: 114 -ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGL--NDMNK 170

Query: 161 -------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                  +A+  F+     D+   +A++  Y   GN+  A  +F+ M  RNV +WN++I 
Sbjct: 171 GVQVHSLIAKSPFLS----DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLIT 226

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE-- 271
            + +NGP   A+ +  +M +SR  P+E T  S++++C        A   AI++G E    
Sbjct: 227 CFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISAC--------ASLSAIKVGQEVHGR 278

Query: 272 -----------------TSLTYKCT----CHYVF---------------WDWGFQLDVNS 295
                              +  KC+      ++F                 +       +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           ARL F ++  ++VVSW A+I  Y+ +G   +   LF  + +    P   +F  +L  C+ 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 356 AGLVEKGRKT-FNLMSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHER 410
              +  G +   +++   + F+   E      + L D+  + G V+E   V  KM   ER
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM--MER 456

Query: 411 DHVVLGALL 419
           D V   A++
Sbjct: 457 DCVSWNAMI 465



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 131/275 (47%), Gaps = 14/275 (5%)

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           N +  +  +I   + C  LE        R+ F +MP ++I  WN+++T     G + +A 
Sbjct: 53  NEIFIQNRLIDAYSKCGSLED------GRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEAD 106

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-- 252
            LF  MP+R+  TWN+M+  +A++     A+    +M +  F+ NE +  S+L++C G  
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166

Query: 253 -MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            M + +  H+L  +  F  +  +       Y         +VN A+  F+ +  ++VVSW
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-----NVNDAQRVFDEMGDRNVVSW 221

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            ++I  +  +G   +   +F  ML+S  +PDE+T   V+S C+    ++ G++    + +
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
               +      +   D+  +  ++KEA  +   MP
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 127/305 (41%), Gaps = 64/305 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G V +A ++FDEM   + VS  S+IT F +N    +A  +F+ M ES             
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    + +I+  +A +D Y K  R+ EAR +FD +   NV
Sbjct: 261 SACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------LIAK 140
            + TS+ISGY  A      R +F +M    +NVVSW  ++ G   NG          + K
Sbjct: 321 IAETSMISGYAMAASTKAARLMFTKMA--ERNVVSWNALIAGYTQNGENEEALSLFCLLK 378

Query: 141 LEVISWTTMCTGLERNAMTKLAREY---------------FVQMPNKDIVAWNAMITAYV 185
            E +  T         A   LA  +               F      DI   N++I  YV
Sbjct: 379 RESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G + +   +F  M +R+  +WNAMI  +A+NG    A++L   M +S   P+  T   
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIG 498

Query: 246 ILTSC 250
           +L++C
Sbjct: 499 VLSAC 503


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 272/554 (49%), Gaps = 71/554 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES- 54
           S +   G ++ A ++FD M + D VS  ++I  + +N    +A ALF  M      P S 
Sbjct: 163 SMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS 222

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         + +++  + +++ Y K G V+ A K+F+ +
Sbjct: 223 TLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERM 282

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE 142
              +V SW ++I GY    Q  E    F+RM ++    N ++  +V+  CAH   + + +
Sbjct: 283 PIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQ 342

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
            I    + +G E N                D+V  NA++  Y   GN+  A +LF  MP+
Sbjct: 343 QIHGYAIRSGFESN----------------DVVG-NALVNMYAKCGNVNSAYKLFERMPK 385

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLA 259
           +NV  WNA+I  Y+++G    A+ L   M      P+     S+L +C   L   +    
Sbjct: 386 KNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI 445

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           H   IR GFE    +        ++   G   +VN+A+  FER+  +DVVSWT MILAY 
Sbjct: 446 HGYTIRSGFESNVVVGTGLV--DIYAKCG---NVNTAQKLFERMPEQDVVSWTTMILAYG 500

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HGHG     LF++M ++GTK D I F  +L+ CSHAGLV++G + F  M   YG  P+ 
Sbjct: 501 IHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY+CL D+L RAG + EA  ++  M   E D  V GALLGACR+H ++ + +   + L 
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSL-EPDANVWGALLGACRIHCNIELGEQAAKHLF 619

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-- 496
           EL P ++G YVL +N++A    W++ A++RK M E+ VKK    S + V     T L   
Sbjct: 620 ELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGD 679

Query: 497 ---PMREMGYVVLK 507
              P  E  Y +L+
Sbjct: 680 RTHPQSEQIYAMLE 693



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 194/427 (45%), Gaps = 36/427 (8%)

Query: 11  KEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
            +A +L+ +M +    PD +   S+I       DL     +   +     + +++  +A+
Sbjct: 102 NKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTAL 161

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
              Y K G ++ AR+VFD + + +V SW ++I+GY +  Q  E   LF  M +     N 
Sbjct: 162 ASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS 221

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            +  +V+  CAH   + + + I    + +G+E                  D++  N ++ 
Sbjct: 222 STLVSVMPVCAHLLALEQGKQIHCYAIRSGIE-----------------SDVLVVNGLVN 264

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   GN+  A +LF  MP R+V +WNA+I  Y+ N     A+   N M      PN  T
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 243 CTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             S+L +C  +    +    H  AIR GFE    +       Y         +VNSA   
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCG-----NVNSAYKL 379

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FER+  K+VV+W A+I  YS HGH  +   LF  M   G KPD    V VL  C+H   +
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLAL 439

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E+G++      R+ GF+      + L DI  + G V  A ++  +MP  E+D V    ++
Sbjct: 440 EQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP--EQDVVSWTTMI 496

Query: 420 GACRLHG 426
            A  +HG
Sbjct: 497 LAYGIHG 503



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 29/328 (8%)

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT------------------KL 161
            N V W   ++G   NG   K   + +    TG+  + +                   K+
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
             +   +    D++   A+ + Y   G++  A ++F+ MP+R+V +WNA+I  Y++NG  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKC 278
             A+ L + M  +   PN +T  S++  C  +L   +    H  AIR G E +  +    
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y         +VN+A   FER+  +DV SW A+I  YS +    +    F RM   G
Sbjct: 263 VNMYAKCG-----NVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KP+ IT V VL  C+H   +E+G++      R+ GF+      + L ++  + G V  A
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSA 376

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHG 426
            ++  +MP  +++ V   A++     HG
Sbjct: 377 YKLFERMP--KKNVVAWNAIISGYSQHG 402



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA-- 259
           + N   W   I  Y +NG    A++L   M ++   P++    S++ +C G   ++ A  
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC-GSQSDLQAGR 140

Query: 260 --HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             H   I  GFE +  +       Y          + +AR  F+R+  +DVVSW A+I  
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCG-----SLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           YS +G  ++   LF+ M  +G KP+  T V V+  C+H   +E+G++      R+ G + 
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-GIES 254

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
                + L ++  + G V  A ++  +MP   RD     A++G   L+
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPI--RDVASWNAIIGGYSLN 300


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 237/451 (52%), Gaps = 47/451 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  + ++++ Y K G +D ARKVFD + + +V  W SLI GY +  ++D   +LF+ MP
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       +  SWT +  GL +    + AR+ F QMP +++V+
Sbjct: 206 ER-----------------------DAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVS 242

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WNAMI  Y+ +G+   A ELF  MP  ++ TWN MI  Y  NG    A+K+  +M +   
Sbjct: 243 WNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS 302

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQE----TSLT---YKCTCHYVFWD 286
            P+  T  S+L++  G+    +    H+   + GFE +    TSL     KC C      
Sbjct: 303 RPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGC------ 356

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 + SA   F  ++ K V  WTA+I+    HG       LF  M K+G KP+ I F
Sbjct: 357 ------IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIF 410

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +GVL+ C+HAGLV+ GR+ F++M   Y  +P  EHY CL DIL RAG ++EA   +  MP
Sbjct: 411 IGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMP 470

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               + V+  +LLG  R HG + + +Y  +R+IE+ P + G Y+L +N++AA G W++ +
Sbjct: 471 I-SPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVS 529

Query: 467 QVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            VR+ M +R  +K    S +E KG  H  + 
Sbjct: 530 HVREMMYKRGFRKDPGCSSVEHKGTLHEFIV 560



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 22/261 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A K+FD M   D V   S+I  + R  ++  A  LF  MPE  R+  + + ++DG
Sbjct: 161 GEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPE--RDAFSWTVLVDG 218

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             K G+V+ ARK+FD++   N+ SW ++I+GY K+   D    LF +MP  + ++V+W  
Sbjct: 219 LSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMP--IWDLVTWNL 276

Query: 128 VVLGCAHNG----------LIAKL-------EVISWTTMCTGLERNAMTKLAREYFVQMP 170
           ++ G   NG          ++ KL        ++S  +  +GL      +    Y  +  
Sbjct: 277 MIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNG 336

Query: 171 NK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            + D +   ++I  Y   G +  A  +F  + ++ V  W A+I     +G    A+ L  
Sbjct: 337 FELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFL 396

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M ++   PN      +L +C
Sbjct: 397 EMCKTGLKPNAIIFIGVLNAC 417



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 26/215 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GKV+ A KLFD+M   + VS  +MI  ++++ D   A  LF  MP    ++V  + MI G
Sbjct: 223 GKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMP--IWDLVTWNLMIAG 280

Query: 68  YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLK 120
           Y   G+  +A K+F  + +     +  +  S++S       + +GR +   M     +L 
Sbjct: 281 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 340

Query: 121 NVVSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQM-- 169
            ++  + + +    GC  + L     I K +V  WT +  GL  + M   A   F++M  
Sbjct: 341 GILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCK 400

Query: 170 ----PNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
               PN   + +  ++ A   AG +    + F++M
Sbjct: 401 TGLKPNA--IIFIGVLNACNHAGLVDDGRQYFDMM 433



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D+  AR  F+R++ + ++ W  +I  Y  +        LF  ++     PD  T   V+ 
Sbjct: 62  DLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIK 120

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+  G+V++G++   L  +  GF         L ++  + G++  A +V   M   ++D
Sbjct: 121 GCARLGVVQEGKQIHGLALKI-GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMI--DKD 177

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIE 440
            V+  +L+      G++ +A  + E + E
Sbjct: 178 VVLWNSLIDGYARCGEIDIALQLFEEMPE 206


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 254/494 (51%), Gaps = 44/494 (8%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG---RVDEARKVF 81
           P+S  + +   +R  DL  AE  F +     +     + ++ GY KA    R+ +AR++F
Sbjct: 13  PLSTVA-VAAAVRRGDLAGAEEAFAS--TQLKTTTTYNCLLAGYAKASGLIRLADARRLF 69

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----- 136
           D I   +  S+ +L+S +F    +D  RR+F  MP+K  +V SW T+V G + NG     
Sbjct: 70  DSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVK--DVTSWNTMVSGLSKNGASEEA 127

Query: 137 -----LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNM 190
                ++     +SW  M   L  +     A + F   P K D + W AM++ Y+D GN+
Sbjct: 128 AAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNV 187

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTS 249
            +A E F  MP RN+ +WNA++  Y +N     A+++   M +   + PN +T +S+L  
Sbjct: 188 QKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLG 247

Query: 250 CEGMLE---NMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           C  +         H   ++L   +  +     L+  C C           D+N A   F+
Sbjct: 248 CSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCG----------DLNDACKVFD 297

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KD+V+W AMI  Y+ HG G Q  +LF +M   G  PD IT + VL+ C H GL + 
Sbjct: 298 EMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDF 357

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALL 419
           G + F  M  AY  +P+ +HYSC+ D+L RAG ++ A+ ++  MP  PH   +   G LL
Sbjct: 358 GIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAY---GTLL 414

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
            ACR++ ++  A++   +LIE  P ++GAYV  AN++A   +W + ++VR+ M +  V K
Sbjct: 415 TACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVK 474

Query: 479 VASFSQIEVKGKDH 492
              +S +E+KG  H
Sbjct: 475 TPGYSWMEIKGVRH 488



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 25/270 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           +  F C G +  A ++F  M   D  S  +M++   +N    +A A+FR MP   RN V+
Sbjct: 85  SCHFAC-GDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP--VRNAVS 141

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYE-GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            +AM+     +G +  A  +F    E  +   WT+++SGY     V +    F  MP  +
Sbjct: 142 WNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMP--V 199

Query: 120 KNVVSWTTVVLGCAHNG---------------LIAKLEVISWTTM---CTGLERNAMTKL 161
           +N+VSW  VV G   N                 I +    + +++   C+ L      + 
Sbjct: 200 RNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQ 259

Query: 162 AREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
             ++ +++P ++++    ++++ Y   G++  A ++F+ M  +++  WNAMI  YA++G 
Sbjct: 260 VHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGG 319

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              A+KL   M     +P+  T  ++LT+C
Sbjct: 320 GMQAIKLFEKMKDEGVVPDWITLLAVLTAC 349


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/535 (31%), Positives = 267/535 (49%), Gaps = 73/535 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA +LFD M   + VS  +M++ +LRN  + +A  LF  MP   RN V+   MI G
Sbjct: 119 GRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMP--SRNDVSWLTMISG 176

Query: 68  YVKAGRVDEARKVFD-----------EIYEGNV--------------------YSWTSLI 96
           Y+K  R+ EAR++FD            +  G V                     SW  +I
Sbjct: 177 YIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMI 236

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----------IAKLEVISW 146
           +GY +A ++   + LFD MP K  + +SWT V+ G   NG           I   +V++W
Sbjct: 237 TGYARAGRMQVAQSLFDEMPQK--DTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAW 294

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            TM  G  ++     A   F +MP +D+V+WN ++  +V  G+MA A+  F  MP+++  
Sbjct: 295 NTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDET 354

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALA 263
           +WN +I  +   G    A+ LL+ M +    P+E T + +++ C  ++      + H  A
Sbjct: 355 SWNTLISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYA 410

Query: 264 IRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           ++ GFE +        S+  KC              +  A   F+ L  +D V+W AMI 
Sbjct: 411 VKTGFEHDALVMSSLISMYSKCGL------------IAEASQVFKLLVQRDTVTWNAMIA 458

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y+ HG   +  +LF +M K G +PD  TF+ VLS C+H G + +G + F  M   +   
Sbjct: 459 TYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLT 518

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
           PR++HYSC+ D+L R G + +A     K+P   + +     L  AC  HGDV++ + I +
Sbjct: 519 PRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQIN-AWETLFSACNAHGDVQLGEVIAK 577

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
            +++ +PS  G Y L AN++A++  W   A VR  M E+ +KK    S +E+KG+
Sbjct: 578 DVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGE 632



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 197/423 (46%), Gaps = 37/423 (8%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDE 76
           FDEM + +  +   MI+  + N  L  A  +F AMP   RN V+ +A++ GY + GRV E
Sbjct: 66  FDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP--VRNPVSWAALLTGYARCGRVAE 123

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR++FD + + NV SW +++SGY +   V+  R LFD MP   +N VSW T++ G     
Sbjct: 124 ARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMP--SRNDVSWLTMISGYIKKR 181

Query: 137 LIAK------LEVISWTTMCTGLERNAMT----KLAREYFVQMPNKDIVAWNAMITAYVD 186
            + +      L     T++C  L    +     K A E F +M  +D V+WN MIT Y  
Sbjct: 182 RLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYAR 241

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           AG M  A  LF+ MPQ++  +W A++  Y +NG   A+ K+   +     +   T     
Sbjct: 242 AGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGF 301

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF--QLDVNSARLAFERLE 304
           + S        L  AL +     +   +++           G   Q D+ +A   F  + 
Sbjct: 302 VQS------ERLDDALRLFAEMPERDLVSWNTILQ------GHVQQGDMATANTWFRGMP 349

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR- 363
            KD  SW  +I  + + G       L + M++ G +PDE T   V+S C  A LV  G  
Sbjct: 350 EKDETSWNTLISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISIC--ASLVALGYG 403

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
           K  +L +   GF+  A   S L  +  + G + EA +V   +   +RD V   A++    
Sbjct: 404 KMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLV--QRDTVTWNAMIATYA 461

Query: 424 LHG 426
            HG
Sbjct: 462 YHG 464



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 151/347 (43%), Gaps = 48/347 (13%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +++ W ++I+ + +A +V   RR+FD MP +                        V +W 
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPER-----------------------NVFTWN 78

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M +GL  N M   AR  F  MP ++ V+W A++T Y   G +A+A ELF+ MP RNV +
Sbjct: 79  CMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVS 138

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN-MLAHALAI-R 265
           WNAM+  Y RNG    A +L ++      MP+     S LT   G ++   L  A  +  
Sbjct: 139 WNAMMSGYLRNGMVERARELFDM------MPSRND-VSWLTMISGYIKKRRLREARELFD 191

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           L     TS+       YV         +  A   F R++ +D VSW  MI  Y+  G   
Sbjct: 192 LSPSHPTSVCNALLSGYVALSC-----LKDAEELFGRMQRRDPVSWNVMITGYARAGRMQ 246

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF  M     + D I++  V+      G V+   K F  +            ++ +
Sbjct: 247 VAQSLFDEM----PQKDTISWTAVMRGYLQNGDVDASWKVFQDIP-----DRDVVAWNTM 297

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
                ++ ++ +A+R+ ++MP  ERD V    +L      GD+  A+
Sbjct: 298 MGGFVQSERLDDALRLFAEMP--ERDLVSWNTILQGHVQQGDMATAN 342


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 172/531 (32%), Positives = 270/531 (50%), Gaps = 49/531 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMP 52
            S    +G+V+EA  +  +M       D  +  S +T   R   L   + L     R +P
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
                +   SA+++ Y K+G   EA+ VF+ +++ N  +WT LISG+ +     E   LF
Sbjct: 302 HIDPYVA--SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELF 359

Query: 113 DRMPLKLKNV--VSWTTVVLGCAH--------------------NGLIAKLEVISWTTMC 150
           ++M  +L  +   +  T++ GC                        ++    +IS    C
Sbjct: 360 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
             L+       A   F  M  KDIV+W +MITAY   GN+A+A E F+ M ++NV TWNA
Sbjct: 420 DNLQS------AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 473

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHAL---AIRL 266
           M+  Y ++G E   +++  +M    ++ P+  T  ++   C  +  N L   +    +++
Sbjct: 474 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKV 533

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G   +TS+       Y     G  L+   AR  F+ L  KD+VSW AMI  YS HG G Q
Sbjct: 534 GLIIDTSVANAVITMYS--KCGRILE---ARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  +LK G KPD I++V VLS CSH+GLV++G+  F++M RA+   P  EH+SC+ 
Sbjct: 589 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMV 648

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG + EA  ++  MP       V GALL AC++HG+  +A+   + + EL    S
Sbjct: 649 DLLGRAGHLTEAKDLIDDMPMKPTAE-VWGALLSACKIHGNNELAELAAKHVFELDSPDS 707

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           G+Y+L A ++A  G+ D+ AQ+RK M ++ +KK   +S +EV  K H   A
Sbjct: 708 GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKA 758



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 154/338 (45%), Gaps = 32/338 (9%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           +SQ +    +A++D +V+ G VD A ++F  I E  ++   S+++GY K   VD    LF
Sbjct: 168 DSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELF 227

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAM 158
           D MP   ++VVSW  +V   + +G +               +L+  ++T+  T   R + 
Sbjct: 228 DSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 159 TKLAREYFVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            +  ++   Q    +P+ D    +A++  Y  +G   +A  +FN +  RN   W  +I  
Sbjct: 286 LRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG 345

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE 271
           + + G    +++L N M       ++    ++++ C   ++  L    H+L ++ G  Q 
Sbjct: 346 FLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQA 405

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
             ++      Y   D     ++ SA   F  +  KD+VSWT+MI AYS  G+  +    F
Sbjct: 406 VVVSNSLISMYAKCD-----NLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFF 460

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
             M    ++ + IT+  +L      G  E G + + +M
Sbjct: 461 DGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVM 494



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 34  VFLRN---HDLPKAEALFRA-----MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           VFL+N   H      AL  A     M  +  N++  + M++GY K GR+ +A ++F  + 
Sbjct: 39  VFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMP 98

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLF-------DRMP--------LKLKNVVSWTTVVL 130
             +V SW +L+SGYF++RQ       F       D  P        +K    + W ++ L
Sbjct: 99  ARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 158

Query: 131 GCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
                 ++ K +    + +   L     R     LA   FV++    +   N+M+  YV 
Sbjct: 159 QLL--AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 216

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
              +  A ELF+ MP+R+V +WN M+   +++G    A+ ++  M       + TT TS 
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 247 LTSCEGMLE---NMLAHALAIR-------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           LT+C  +         HA  IR               L  K  C               A
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC------------FKEA 324

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +  F  L  ++ V+WT +I  +  +G   +   LF +M       D+     ++S C   
Sbjct: 325 KGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 384

Query: 357 GLVEKGRKTFNL 368
             +  GR+  +L
Sbjct: 385 MDLCLGRQLHSL 396



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 18/296 (6%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           IA   VI+   M  G  +      A E F +MP +D+ +WN +++ Y  +     + E F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 198 NLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
             M +      N +T    +      G    A++LL  M Q     +++   + L     
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVD--- 181

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           M     A  LA RL F +    T  C  + +   +     V+ A   F+ +  +DVVSW 
Sbjct: 182 MFVRCGAVDLASRL-FVRIKEPTMFCR-NSMLAGYVKTYGVDHALELFDSMPERDVVSWN 239

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            M+ A S  G   +   +   M   G + D  T+   L+ C+    +  G++   L ++ 
Sbjct: 240 MMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ---LHAQV 296

Query: 373 YGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               P  + Y  S L ++  ++G  KEA  V + +  H+R++V    L+     +G
Sbjct: 297 IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSL--HDRNNVAWTVLISGFLQYG 350


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 172/531 (32%), Positives = 270/531 (50%), Gaps = 49/531 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMP 52
            S    +G+V+EA  +  +M       D  +  S +T   R   L   + L     R +P
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 321

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
                +   SA+++ Y K+G   EA+ VF+ +++ N  +WT LISG+ +     E   LF
Sbjct: 322 HIDPYVA--SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELF 379

Query: 113 DRMPLKLKNV--VSWTTVVLGCAH--------------------NGLIAKLEVISWTTMC 150
           ++M  +L  +   +  T++ GC                        ++    +IS    C
Sbjct: 380 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 439

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
             L+       A   F  M  KDIV+W +MITAY   GN+A+A E F+ M ++NV TWNA
Sbjct: 440 DNLQS------AEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNA 493

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHAL---AIRL 266
           M+  Y ++G E   +++  +M    ++ P+  T  ++   C  +  N L   +    +++
Sbjct: 494 MLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKV 553

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G   +TS+       Y     G  L+   AR  F+ L  KD+VSW AMI  YS HG G Q
Sbjct: 554 GLIIDTSVANAVITMYS--KCGRILE---ARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 608

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  +LK G KPD I++V VLS CSH+GLV++G+  F++M RA+   P  EH+SC+ 
Sbjct: 609 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMV 668

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG + EA  ++  MP       V GALL AC++HG+  +A+   + + EL    S
Sbjct: 669 DLLGRAGHLTEAKDLIDDMPMKPTAE-VWGALLSACKIHGNNELAELAAKHVFELDSPDS 727

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           G+Y+L A ++A  G+ D+ AQ+RK M ++ +KK   +S +EV  K H   A
Sbjct: 728 GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKA 778



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 154/338 (45%), Gaps = 32/338 (9%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           +SQ +    +A++D +V+ G VD A ++F  I E  ++   S+++GY K   VD    LF
Sbjct: 188 DSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELF 247

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAM 158
           D MP   ++VVSW  +V   + +G +               +L+  ++T+  T   R + 
Sbjct: 248 DSMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 305

Query: 159 TKLAREYFVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            +  ++   Q    +P+ D    +A++  Y  +G   +A  +FN +  RN   W  +I  
Sbjct: 306 LRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG 365

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE 271
           + + G    +++L N M       ++    ++++ C   ++  L    H+L ++ G  Q 
Sbjct: 366 FLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQA 425

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
             ++      Y   D     ++ SA   F  +  KD+VSWT+MI AYS  G+  +    F
Sbjct: 426 VVVSNSLISMYAKCD-----NLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFF 480

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
             M    ++ + IT+  +L      G  E G + + +M
Sbjct: 481 DGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVM 514



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 34  VFLRN---HDLPKAEALFRA-----MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           VFL+N   H      AL  A     M  +  N++  + M++GY K GR+ +A ++F  + 
Sbjct: 59  VFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMP 118

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLF-------DRMP--------LKLKNVVSWTTVVL 130
             +V SW +L+SGYF++RQ       F       D  P        +K    + W ++ L
Sbjct: 119 ARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 178

Query: 131 GCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
                 ++ K +    + +   L     R     LA   FV++    +   N+M+  YV 
Sbjct: 179 QLL--AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVK 236

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
              +  A ELF+ MP+R+V +WN M+   +++G    A+ ++  M       + TT TS 
Sbjct: 237 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 296

Query: 247 LTSCEGMLE---NMLAHALAIR-------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           LT+C  +         HA  IR               L  K  C               A
Sbjct: 297 LTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC------------FKEA 344

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +  F  L  ++ V+WT +I  +  +G   +   LF +M       D+     ++S C   
Sbjct: 345 KGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 404

Query: 357 GLVEKGRKTFNL 368
             +  GR+  +L
Sbjct: 405 MDLCLGRQLHSL 416



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 18/296 (6%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           IA   VI+   M  G  +      A E F +MP +D+ +WN +++ Y  +     + E F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 198 NLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
             M +      N +T    +      G    A++LL  M Q     +++   + L     
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVD--- 201

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           M     A  LA RL F +    T  C  + +   +     V+ A   F+ +  +DVVSW 
Sbjct: 202 MFVRCGAVDLASRL-FVRIKEPTMFCR-NSMLAGYVKTYGVDHALELFDSMPERDVVSWN 259

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            M+ A S  G   +   +   M   G + D  T+   L+ C+    +  G++   L ++ 
Sbjct: 260 MMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ---LHAQV 316

Query: 373 YGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               P  + Y  S L ++  ++G  KEA  V + +  H+R++V    L+     +G
Sbjct: 317 IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSL--HDRNNVAWTVLISGFLQYG 370


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/496 (33%), Positives = 252/496 (50%), Gaps = 37/496 (7%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMI 65
           EA K ++ M     +PD V+  S++  F     L   + +   + ++   +     ++++
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLV 239

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVV 123
             Y K G + +A+ +FD++ E NV +WT LI+GY +  QVD    L ++M       N +
Sbjct: 240 GMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKI 299

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
           ++T+++ GC               T    LE     K    Y +Q    ++I   NA+IT
Sbjct: 300 TYTSILQGC---------------TTPLALEHG---KKVHRYIIQSGYGREIWVVNALIT 341

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G + +A +LF  +P R+V TW AM+  YA+ G    A+ L   M Q    P++ T
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401

Query: 243 CTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            TS LTSC     + E    H   +  G+  +  L       Y          ++ ARL 
Sbjct: 402 FTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCG-----SMDDARLV 456

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F ++  ++VV+WTAMI   + HG   +    F +M K G KPD++TF  VLS C+H GLV
Sbjct: 457 FNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLV 516

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E+GRK F  M   YG KP  EHYSC  D+L RAG ++EA  V+  M P +    V GALL
Sbjct: 517 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTM-PFQPGPSVWGALL 575

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKK 478
            ACR+H DV   +   E +++L P   GAYV  +N++AA G +++  +VR+ ME+R V K
Sbjct: 576 SACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVK 635

Query: 479 VASFSQIEVKGKDHTL 494
               S IEV GK H  
Sbjct: 636 EPGQSWIEVDGKVHVF 651



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 11/245 (4%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +++ Y   G++  A  +F+ +  RN+ +W AMI+ +        A K    M  +   
Sbjct: 135 NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCK 194

Query: 238 PNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P++ T  S+L   T+ E +      H    + G E E  +       Y         D++
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG-----DIS 249

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A++ F++L  K+VV+WT +I  Y+  G       L  +M ++   P++IT+  +L  C+
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               +E G+K    + ++ G+       + L  +  + G +KEA ++   +P   RD V 
Sbjct: 310 TPLALEHGKKVHRYIIQS-GYGREIWVVNALITMYCKCGGLKEARKLFGDLP--HRDVVT 366

Query: 415 LGALL 419
             A++
Sbjct: 367 WTAMV 371


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 246/442 (55%), Gaps = 39/442 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++I  Y     +  A+++F    + +V SW ++I GY K  ++   R +FDRM    ++
Sbjct: 39  NSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM--VCRD 96

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           V+SW T++ G A  G I +                     A+  F +MP +++V+WN+M+
Sbjct: 97  VISWNTIINGYAIVGKIDE---------------------AKRLFDEMPERNLVSWNSML 135

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + +V  GN+ +A  LF+ MP R+V +WN+M+  YA+ G    A+ L + M      P E 
Sbjct: 136 SGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEA 195

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLA- 299
           T  S+L++C        AH  A+  G    T +   +   + +       +     +++ 
Sbjct: 196 TVVSLLSAC--------AHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISL 247

Query: 300 ----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
               F  +E+KDV++W  +I   + HGH  +  +LF  M ++  +P++ITFV +LS CSH
Sbjct: 248 ATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSH 307

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           AG+V++G+K  + MS +YG +P+ EHY C+ D+L RAG ++EAM ++  M P E +   L
Sbjct: 308 AGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM-PMEPNPSAL 366

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-R 474
           GALLG CR+HG+  + + +G+RLI LQP  SG Y+L +N++AA  +WD+  +VR  M+  
Sbjct: 367 GALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVN 426

Query: 475 RVKKVASFSQIEVKGKDHTLLA 496
            + KV   S IE+KG  H  +A
Sbjct: 427 GISKVPGVSVIELKGMVHRFVA 448



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 23/252 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++     +FD M   D +S  ++I  +     + +A+ LF  MPE  RN+V+ ++M+ G
Sbjct: 80  GEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPE--RNLVSWNSMLSG 137

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           +VK G V+EA  +F E+   +V SW S+++ Y +  + +E   LFD+M          T 
Sbjct: 138 FVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 197

Query: 128 VVL--GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
           V L   CAH G + K   +        +E N+                 +   A++  Y 
Sbjct: 198 VSLLSACAHLGALDKGLHLHTYINDNRIEVNS-----------------IVGTALVDMYA 240

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G ++ A+++FN M  ++V  WN +I   A +G    A +L   M ++   PN+ T  +
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 246 ILTSCE--GMLE 255
           +L++C   GM++
Sbjct: 301 MLSACSHAGMVD 312



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 39/263 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-----PESQR 56
           S F   G V+EA  LF EM   D VS  SM+  + +     +A ALF  M       ++ 
Sbjct: 136 SGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEA 195

Query: 57  NIVAESAMIDGYVKAGRVDEARK----VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
            +V   +++      G +D+       + D   E N    T+L+  Y K  ++    ++F
Sbjct: 196 TVV---SLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 252

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           + M  + K+V++W T++ G A +G +               E   + K  +E  V+ PN 
Sbjct: 253 NAM--ESKDVLAWNTIIAGMAIHGHVK--------------EAQQLFKEMKEASVE-PND 295

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAMKL 227
             + + AM++A   AG + +  +L + M      +  V  ++ +ID  AR G    AM+L
Sbjct: 296 --ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMEL 353

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
           +  M      PN +   ++L  C
Sbjct: 354 IGTM---PMEPNPSALGALLGGC 373


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 240/454 (52%), Gaps = 63/454 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S++I  Y     +  A+++F+     +V SW ++I GY K  ++   R +FDRM  +   
Sbjct: 234 SSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCR--- 290

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               +VISW TM  G         A+  F +MP +++V+WN+M+
Sbjct: 291 --------------------DVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSML 330

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             +V  GN+  A  LF+ MP R+V +WN+M+  YA+ G    A+ L + M      P E 
Sbjct: 331 AGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEA 390

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS------ 295
           T  S+L++C        AH  A+  G    T +               +++VNS      
Sbjct: 391 TVVSLLSAC--------AHLGALDKGLHLHTYINDN------------RIEVNSIVGTAL 430

Query: 296 ------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                       A   F  +E+KDV++W  +I   + HG+  +  +LF  M ++G +P++
Sbjct: 431 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 490

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFV +LS CSHAG+V++G+K  + MS +YG +P+ EHY C+ D+L RAG ++EAM ++ 
Sbjct: 491 ITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIG 550

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P E +   LGALLG CR+HG+  + + +G+RLI LQP  SG Y+L +N++AA  +WD
Sbjct: 551 TM-PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWD 609

Query: 464 EFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
           +  +VR  M+   + KV   S IE+KG  H  +A
Sbjct: 610 DARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 643



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 23/248 (9%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA 71
            A  +FD M   D +S  +MI  +     + +A+ LF  MPE  RN+V+ ++M+ G+VK 
Sbjct: 279 HARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE--RNLVSWNSMLAGFVKC 336

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL- 130
           G V++A  +F E+   +V SW S+++ Y +  + +E   LFD+M          T V L 
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 396

Query: 131 -GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
             CAH G + K           GL  +      R   +++   + +   A++  Y   G 
Sbjct: 397 SACAHLGALDK-----------GLHLHTYINDNR---IEV---NSIVGTALVDMYAKCGK 439

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           ++ A+++FN M  ++V  WN +I   A +G    A +L   M ++   PN+ T  +IL++
Sbjct: 440 ISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 499

Query: 250 CE--GMLE 255
           C   GM++
Sbjct: 500 CSHAGMVD 507



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 24/202 (11%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           GK  EA  LFD+M     +P   +  S+++       L K   L   + ++  + N +  
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 427

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D Y K G++  A +VF+ +   +V +W ++I+G      V E ++LF  M      
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N +++  ++  C+H G++ + + +             +  ++  Y ++     +  +  
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQKL-------------LDCMSSSYGIE---PKVEHYGC 531

Query: 180 MITAYVDAGNMAQASELFNLMP 201
           +I     AG + +A EL   MP
Sbjct: 532 VIDLLARAGFLEEAMELIGTMP 553


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 246/450 (54%), Gaps = 39/450 (8%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R +   +AM+ GY K     +A+ +FD + E NV +WT++++GY K + ++  RR FD M
Sbjct: 72  RKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCM 131

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN--KD 173
           P +                        V+SW  M +G  +N + + A   F +M    ++
Sbjct: 132 PER-----------------------SVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRN 168

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V WNAMI+AY+  G++  A +LFN MP RNV TWN+MI  YA+NG    A++L   M  
Sbjct: 169 SVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMIT 228

Query: 234 SR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           ++   P+E T  S++++C G L  +      +R   E +  L+       +F  +     
Sbjct: 229 AKKLTPDEVTMVSVISAC-GHLGALELGNWVVRFLTENQIKLSISGHNAMIFM-YSRCGS 286

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A+  F+ +  +DVVS+  +I  ++ HGHG +   L + M + G +PD +TF+GVL+ 
Sbjct: 287 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 346

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHER 410
           CSHAGL+E+GRK F  +       P  +HY+C+ D+L R G++++A R + +MP  PH  
Sbjct: 347 CSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG 401

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
              V G+LL A R+H  V + +    +L EL+P +SG ++L +N++A+ G W +  ++R+
Sbjct: 402 ---VYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIRE 458

Query: 471 KMER-RVKKVASFSQIEVKGKDHTLLAPMR 499
            M++  VKK   +S +E  GK H  +   R
Sbjct: 459 AMKKGGVKKTTGWSWVEYGGKLHKFIVADR 488



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 27/267 (10%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA 71
           +A  LFD M + + ++  +M+T + +  DL  A   F  MPE  R++V+ +AM+ GY + 
Sbjct: 92  QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPE--RSVVSWNAMLSGYAQN 149

Query: 72  GRVDEARKVFDEIYEG--NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           G  +EA ++FDE+     N  +W ++IS Y +   +D  R+LF+ MP   +NVV+W +++
Sbjct: 150 GLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMP--GRNVVTWNSMI 207

Query: 130 LGCAHNGLIA------------------KLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
            G A NG  A                  ++ ++S  + C  L    +      +  +   
Sbjct: 208 AGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI 267

Query: 172 K-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           K  I   NAMI  Y   G+M  A  +F  M  R+V ++N +I  +A +G    A+ L++ 
Sbjct: 268 KLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMST 327

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLE 255
           M +    P+  T   +LT+C   G+LE
Sbjct: 328 MKEGGIEPDRVTFIGVLTACSHAGLLE 354



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 40/172 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---------- 56
            G +  A KLF+ M   + V+  SMI  + +N     A  LF+ M  +++          
Sbjct: 182 VGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 241

Query: 57  ----------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       +I   +AMI  Y + G +++A++VF E+   +
Sbjct: 242 VISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD 301

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
           V S+ +LISG+       E   L   M       + V++  V+  C+H GL+
Sbjct: 302 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 353


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 287/536 (53%), Gaps = 46/536 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           +++GC   ++ A KLFDEM          +I+ + +  +  +A  LF  M ES++N++  
Sbjct: 145 AKYGC---IELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESEKNVITW 201

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKL 119
           + M+ G+ K   ++ AR  FDE+ E  V SW +++SGY ++    E  RLFD M      
Sbjct: 202 TTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNE 261

Query: 120 KNVVSWTTVVLGCAHNG-------LIAKLEVISW-------TTMCTGLERNAMTKLAREY 165
            +  +W TV+  C+  G       ++ KL+ +++       T +     +    ++A++ 
Sbjct: 262 PDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKI 321

Query: 166 FVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           F Q+   K+ V WNAMI+AY   G+++ A +LFN MP+RN  +WN+MI  YA+NG    A
Sbjct: 322 FEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKA 381

Query: 225 MKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
           ++L   M  S+   P+E T  S+ ++C G L  +     A+ +  E    L+       +
Sbjct: 382 IQLFKEMISSKDSKPDEVTMVSVFSAC-GHLGRLGLGNWAVSILHENHIKLSISGYNSLI 440

Query: 284 FWDWGFQLDVNS---ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           F      L   S   AR+ F+ +  KD+VS+  +I   + HGHG +  +L ++M + G  
Sbjct: 441 F----MYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIG 496

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD IT++GVL+ CSHAGL+E+G K F  +       P  +HY+C+ D+L R G+++EA++
Sbjct: 497 PDRITYIGVLTACSHAGLLEEGWKVFESIKV-----PDVDHYACMIDMLGRVGKLEEAVK 551

Query: 401 VVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
           ++  MP  PH     + G+LL A  +H  V + +    +L +++P +SG YVL +N++A 
Sbjct: 552 LIQSMPMEPHAG---IYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYAL 608

Query: 459 RGEWDEFAQVRKKMERRVKKVASF---SQIEVKGKDHTLLA----PMREMGYVVLK 507
            G W +  +VR KM ++  K  +F   ++   K   + LLA     +R  GYV+ K
Sbjct: 609 AGRWKDVDKVRDKMRKQGVKKTTFIVENRPHEKSDIYNLLAHLKVKLRRAGYVIDK 664



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 170/373 (45%), Gaps = 40/373 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++  Y K G ++ ARK+FDE+ +     W  +ISGY+K     E  RLF  M    KN
Sbjct: 138 NAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESEKN 197

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           V++WTT+V G A                     RN  T  AR YF +MP + + +WNAM+
Sbjct: 198 VITWTTMVTGHAK-------------------MRNLET--ARMYFDEMPERRVASWNAML 236

Query: 182 TAYVDAGNMAQASELFNLM----PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           + Y  +G   +   LF+ M     + +  TW  ++   +  G    A  ++  + +  F 
Sbjct: 237 SGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFR 296

Query: 238 PNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            N    T++L     C G LE      +A ++ FEQ        T + +   +    D++
Sbjct: 297 SNYFVKTALLDMHAKC-GNLE------VAQKI-FEQLGVYKNSVTWNAMISAYARVGDLS 348

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDC 353
            AR  F ++  ++ VSW +MI  Y+ +G   +  +LF  M+ S  +KPDE+T V V S C
Sbjct: 349 LARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSAC 408

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
            H G +  G    +++   +  K     Y+ L  +  R G +++A     +M    +D V
Sbjct: 409 GHLGRLGLGNWAVSILHENH-IKLSISGYNSLIFMYLRCGSMEDARITFQEMAT--KDLV 465

Query: 414 VLGALLGACRLHG 426
               L+     HG
Sbjct: 466 SYNTLISGLAAHG 478


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 260/511 (50%), Gaps = 42/511 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G VK A +LFD M   D VS  +MI+ +++   + +A  LF +MP    ++  
Sbjct: 134 VSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVC- 192

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++ GYV+ G +  A  +F ++   N  SW  +I+GY +A  +   +RLFD MP K  
Sbjct: 193 -NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK-- 249

Query: 121 NVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +V+S T ++ G   NG +             + ++W TM  G  RN     A + F +MP
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D ++WNA++  YV  G+M  A+  F   P ++  +WN +I  Y   G    A+ LL+ 
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 231 MFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTC 280
           M +    P++ T + +++ C  ++      + H  AI+ GFE +        S+  KC  
Sbjct: 366 MIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGL 425

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                       ++ A   FE +  +D V+W AMI  Y+ HG   +  ++F  M K+G +
Sbjct: 426 ------------ISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD  TF+ +LS C+H G + +G   F  M   +   PR++HYSC+ D+L R+G + +A  
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
              ++P   R       L   C  HG++++ + I   +++ +PS  G Y L +N++AA+ 
Sbjct: 534 FTRRIPSDHRT-TAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKE 592

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
            W   A VR  M ER +KK    S IE+KG+
Sbjct: 593 MWSSAASVRGFMKERGLKKETGCSWIELKGE 623



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 206/422 (48%), Gaps = 35/422 (8%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDE 76
           FDEMS+ +  +   M++  +RN  L +A  +F AMP   RN V+ +A++ GY + GRV E
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP--VRNSVSWAALLTGYARCGRVAE 114

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR++F+ I + NV SW +++SGY +   V   R LFD MP   ++ VSW T++ G     
Sbjct: 115 ARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMP--WRDDVSWLTMISGYIKRK 172

Query: 137 LIAKLEVI------SWTTMCTGLERN----AMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
            + +   +        T++C  L          + A   F QM  ++ V+WN MIT Y  
Sbjct: 173 HVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYAR 232

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           AG+M  A  LF+ MP+++V +  A++  Y +NG   AA K+       + MP+  T  + 
Sbjct: 233 AGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVF------KDMPHRDT-VAW 285

Query: 247 LTSCEGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            T  +G + N  L  AL +         +++      +   +  Q D++SA   F R   
Sbjct: 286 NTMMDGFVRNDRLDDALKLFSEMPDRDQISWNA----ILQGYVQQGDMDSANAWFRRAPN 341

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG-RK 364
           KD +SW  +I  Y + G       L + M++ G KPD+ T   V+S C  A LV  G  K
Sbjct: 342 KDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLGCGK 395

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
             +L +   GF+  A   S L  +  + G + EA +V   +   +RD V   A++     
Sbjct: 396 MVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELIL--QRDTVTWNAMIATYAY 453

Query: 425 HG 426
           HG
Sbjct: 454 HG 455



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 33/301 (10%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           +++  V +W  M +GL RN M   AR+ F  MP ++ V+W A++T Y   G +A+A ELF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           N +P RNV +WNAM+  YARNG    A +L ++      MP      S LT   G ++  
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDM------MPWRDD-VSWLTMISGYIKR- 171

Query: 258 LAHALAIRLGFEQ----ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
             H    R  F+      TS+       YV  + G+   + +A + F +++ ++ VSW  
Sbjct: 172 -KHVREARELFDSMPSPPTSVCNALLSGYV--ELGY---MRAAEVLFGQMQTRNPVSWNV 225

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI  Y+  G      RLF  M     + D ++   ++      G V+   K F  M    
Sbjct: 226 MITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVDAAWKVFKDM---- 277

Query: 374 GFKPRAEH--YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
              P  +   ++ + D   R  ++ +A+++ S+MP  +RD +   A+L      GD+  A
Sbjct: 278 ---PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP--DRDQISWNAILQGYVQQGDMDSA 332

Query: 432 D 432
           +
Sbjct: 333 N 333


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 174/525 (33%), Positives = 265/525 (50%), Gaps = 49/525 (9%)

Query: 7   TGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G+V+EA  L  EM +     D  +  S +T   R   L   + L     R++P  Q + 
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP--QIDP 305

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              SA+I+ Y K G   EA++VF+ + + N  SWT LI G  +     +   LF++M  +
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365

Query: 119 LKNV--VSWTTVVLGC-------------------AHN-GLIAKLEVISWTTMCTGLERN 156
           L  +   +  T++ GC                    HN  ++    +IS    C  L+  
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN- 424

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                A   F  M  +DIV+W +MITAY   GN+ +A E F+ M  RN  TWNAM+  Y 
Sbjct: 425 -----AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 479

Query: 217 RNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
           ++G E   +K+ + M  Q    P+  T  ++   C  +  N L   +    ++ G     
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 539

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y          ++ A+  F+ L  KDVVSW AMI  YS HG G Q  + F 
Sbjct: 540 SVANAAITMYSKCG-----RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML  G KPD I++V VLS CSH+GLV++G+  F++M+R +G  P  EH+SC+ D+L RA
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G + EA  ++ KMP       V GALL AC++HG+  +A+   + + EL    SG+Y+L 
Sbjct: 655 GHLTEAKDLIDKMPMKPTAE-VWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLL 713

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           A +++  G+ D+ AQVRK M ++ +KK   +S +EV+ K H   A
Sbjct: 714 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 758



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 175/426 (41%), Gaps = 43/426 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  +L    L  A  L RA    + N++  + M++GY K G + +A ++FD +   +V
Sbjct: 44  TLLHAYLSCGALSDARRLLRA-DIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 90  YSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNVVSWTTVVLGCAHNG---LIAKLEV 143
            SW +L+SGYF+AR+  +G   F    R    L N  ++  V+  C   G   L  +L  
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162

Query: 144 ISW-----------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           + W           T +     R      A   F Q+    I   N+M+  Y     +  
Sbjct: 163 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH 222

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A E F  M +R+V +WN MI   +++G    A+ L+  M +     + TT TS LT+C  
Sbjct: 223 AIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR 282

Query: 253 MLE---NMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           +         HA  IR   + +         L  KC                 A+  F  
Sbjct: 283 LFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCG------------SFKEAKRVFNS 330

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           L+ ++ VSWT +I     +    +   LF +M       D+     ++S C +   +  G
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 390

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           R+  +L  ++ G        + L  +  + G ++ A  V S M   ERD V   +++ A 
Sbjct: 391 RQLHSLCLKS-GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAY 447

Query: 423 RLHGDV 428
              G++
Sbjct: 448 SQIGNI 453



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 64/271 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A  +F  MS+ D VS  SMIT + +  ++ KA   F  M  + RN +  
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGM--ATRNAITW 471

Query: 62  SAMIDGYVKAGRVDEARKVFD----------------EIYEG------------------ 87
           +AM+  Y++ G  ++  K++                  ++ G                  
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 88  ------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL---- 137
                 NV    + I+ Y K  ++ E ++LFD   L  K+VVSW  ++ G + +G+    
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDL--LNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 138 ----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMIT 182
                      AK + IS+  + +G   + + +  + YF  M     ++     ++ M+ 
Sbjct: 590 AKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVD 649

Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
               AG++ +A +L + MP +     W A++
Sbjct: 650 LLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 260/511 (50%), Gaps = 42/511 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G VK A +LFD M   D VS  +MI+ +++   + +A  LF +MP    ++  
Sbjct: 134 VSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVC- 192

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++ GYV+ G +  A  +F ++   N  SW  +I+GY +A  +   +RLFD MP K  
Sbjct: 193 -NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK-- 249

Query: 121 NVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +V+S T ++ G   NG +             + ++W TM  G  RN     A + F +MP
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D ++WNA++  YV  G+M  A+  F   P ++  +WN +I  Y   G    A+ LL+ 
Sbjct: 310 DRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 231 MFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTC 280
           M +    P++ T + +++ C  ++      + H  AI+ GFE +        S+  KC  
Sbjct: 366 MIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGL 425

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                       ++ A   FE +  +D V+W AMI  Y+ HG   +  ++F  M K+G +
Sbjct: 426 ------------ISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD  TF+ +LS C+H G + +G   F  M   +   PR++HYSC+ D+L R+G + +A  
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
              ++P   R       L   C  HG++++ + I   +++ +PS  G Y L +N++AA+ 
Sbjct: 534 FTRRIPSDHRT-TAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKE 592

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
            W   A VR  M ER +KK    S IE+KG+
Sbjct: 593 MWSSAASVRGFMKERGLKKETGCSWIELKGE 623



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 33/301 (10%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           +++  V +W  M +GL RN M   AR+ F  MP ++ V+W A++T Y   G +A+A ELF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           N +P RNV +WNAM+  YARNG    A +L ++      MP      S LT   G ++  
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDM------MPWRDD-VSWLTMISGYIKR- 171

Query: 258 LAHALAIRLGFEQ----ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
             H    R  F+      TS+       YV  + G+   + +A + F +++ ++ VSW  
Sbjct: 172 -KHVREARELFDSMPSPPTSVCNALLSGYV--ELGY---MRAAEVLFGQMQTRNPVSWNV 225

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI  Y+  G      RLF  M     + D ++   ++      G V+   K F  M    
Sbjct: 226 MITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVDAAWKVFKDM---- 277

Query: 374 GFKPRAEH--YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
              P  +   ++ + D   R  ++ +A+++ S+MP  +RD +   A+L      GD+  A
Sbjct: 278 ---PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP--DRDQISWNAILQGYVQQGDMDSA 332

Query: 432 D 432
           +
Sbjct: 333 N 333


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 174/525 (33%), Positives = 265/525 (50%), Gaps = 49/525 (9%)

Query: 7   TGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G+V+EA  L  EM +     D  +  S +T   R   L   + L     R++P  Q + 
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP--QIDP 305

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              SA+I+ Y K G   EA++VF+ + + N  SWT LI G  +     +   LF++M  +
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365

Query: 119 LKNV--VSWTTVVLGC-------------------AHN-GLIAKLEVISWTTMCTGLERN 156
           L  +   +  T++ GC                    HN  ++    +IS    C  L+  
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN- 424

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                A   F  M  +DIV+W +MITAY   GN+ +A E F+ M  RN  TWNAM+  Y 
Sbjct: 425 -----AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYI 479

Query: 217 RNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
           ++G E   +K+ + M  Q    P+  T  ++   C  +  N L   +    ++ G     
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 539

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y          ++ A+  F+ L  KDVVSW AMI  YS HG G Q  + F 
Sbjct: 540 SVANAAITMYSKCG-----RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML  G KPD I++V VLS CSH+GLV++G+  F++M+R +G  P  EH+SC+ D+L RA
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G + EA  ++ KMP       V GALL AC++HG+  +A+   + + EL    SG+Y+L 
Sbjct: 655 GHLTEAKDLIDKMPMKPTAE-VWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLL 713

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           A +++  G+ D+ AQVRK M ++ +KK   +S +EV+ K H   A
Sbjct: 714 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 758



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 170/415 (40%), Gaps = 43/415 (10%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L  A  L RA    + N++  + M++GY K G + +A ++FD +   +V SW +L+SGYF
Sbjct: 55  LSDARRLLRA-DIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYF 113

Query: 101 KARQVDEGRRLF---DRMPLKLKNVVSWTTVVLGCAHNG---LIAKLEVISW-------- 146
           +AR+  +G   F    R    L N  ++  V+  C   G   L  +L  + W        
Sbjct: 114 QARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDP 173

Query: 147 ---TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
              T +     R      A   F Q+    I   N+M+  Y     +  A E F  M +R
Sbjct: 174 DVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER 233

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAH 260
           +V +WN MI   +++G    A+ L+  M +     + TT TS LT+C  +         H
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293

Query: 261 ALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
           A  IR   + +         L  KC                 A+  F  L+ ++ VSWT 
Sbjct: 294 AKVIRSLPQIDPYVASALIELYAKCG------------SFKEAKRVFNSLQDRNSVSWTV 341

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I     +    +   LF +M       D+     ++S C +   +  GR+  +L  ++ 
Sbjct: 342 LIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS- 400

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           G        + L  +  + G ++ A  V S M   ERD V   +++ A    G++
Sbjct: 401 GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAYSQIGNI 453



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 64/271 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A  +F  MS+ D VS  SMIT + +  ++ KA   F  M    RN +  
Sbjct: 414 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGM--DTRNAITW 471

Query: 62  SAMIDGYVKAGRVDEARKVFD----------------EIYEG------------------ 87
           +AM+  Y++ G  ++  K++                  ++ G                  
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 88  ------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL---- 137
                 NV    + I+ Y K  ++ E ++LFD   L  K+VVSW  ++ G + +G+    
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDL--LNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 138 ----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMIT 182
                      AK + IS+  + +G   + + +  + YF  M     ++     ++ M+ 
Sbjct: 590 AKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVD 649

Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
               AG++ +A +L + MP +     W A++
Sbjct: 650 LLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 174/525 (33%), Positives = 265/525 (50%), Gaps = 49/525 (9%)

Query: 7   TGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G+V+EA  L  EM +     D  +  S +T   R   L   + L     R++P  Q + 
Sbjct: 238 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLP--QIDP 295

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              SA+I+ Y K G   EA++VF+ + + N  SWT LI G  +     +   LF++M  +
Sbjct: 296 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 355

Query: 119 LKNV--VSWTTVVLGC-------------------AHN-GLIAKLEVISWTTMCTGLERN 156
           L  +   +  T++ GC                    HN  ++    +IS    C  L+  
Sbjct: 356 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN- 414

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                A   F  M  +DIV+W +MITAY   GN+ +A E F+ M  RN  TWNAM+  Y 
Sbjct: 415 -----AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 469

Query: 217 RNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
           ++G E   +K+ + M  Q    P+  T  ++   C  +  N L   +    ++ G     
Sbjct: 470 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 529

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y          ++ A+  F+ L  KDVVSW AMI  YS HG G Q  + F 
Sbjct: 530 SVANAAITMYSKCG-----RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 584

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML  G KPD I++V VLS CSH+GLV++G+  F++M+R +G  P  EH+SC+ D+L RA
Sbjct: 585 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 644

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G + EA  ++ KMP       V GALL AC++HG+  +A+   + + EL    SG+Y+L 
Sbjct: 645 GHLTEAKDLIDKMPMKPTAE-VWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLL 703

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           A +++  G+ D+ AQVRK M ++ +KK   +S +EV+ K H   A
Sbjct: 704 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKA 748



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 163/408 (39%), Gaps = 56/408 (13%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +  ++ ++  Y+  G + +AR++   +I E NV +   +++GY K   + +   LFDRMP
Sbjct: 55  VFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP 114

Query: 117 LKLKNVVSWTTVV---------------LGCAHNGLIAKLEVISW-----------TTMC 150
            +  +V SW T++               LGC    L  +L  + W           T + 
Sbjct: 115 RR--DVASWNTLMSDTSRPAGSWMSCGALGCRE--LAPQLLGLFWKFDFWGDPDVETALV 170

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
               R      A   F Q+    I   N+M+  Y     +  A E F  M +R+V +WN 
Sbjct: 171 DMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNM 230

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLG 267
           MI   +++G    A+ L+  M +     + TT TS LT+C  +         HA  IR  
Sbjct: 231 MIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL 290

Query: 268 FEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
            + +         L  KC                 A+  F  L+ ++ VSWT +I     
Sbjct: 291 PQIDPYVASALIELYAKCG------------SFKEAKRVFNSLQDRNSVSWTVLIGGSLQ 338

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +    +   LF +M       D+     ++S C +   +  GR+  +L  ++ G      
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKS-GHNRAIV 397

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
             + L  +  + G ++ A  V S M   ERD V   +++ A    G++
Sbjct: 398 VSNSLISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAYSQIGNI 443



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 64/271 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A  +F  MS+ D VS  SMIT + +  ++ KA   F  M  + RN +  
Sbjct: 404 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGM--ATRNAITW 461

Query: 62  SAMIDGYVKAGRVDEARKVFD----------------EIYEG------------------ 87
           +AM+  Y++ G  ++  K++                  ++ G                  
Sbjct: 462 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 521

Query: 88  ------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL---- 137
                 NV    + I+ Y K  ++ E ++LFD   L  K+VVSW  ++ G + +G+    
Sbjct: 522 KAGLILNVSVANAAITMYSKCGRISEAQKLFDL--LNGKDVVSWNAMITGYSQHGMGKQA 579

Query: 138 ----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMIT 182
                      AK + IS+  + +G   + + +  + YF  M     ++     ++ M+ 
Sbjct: 580 AKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVD 639

Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
               AG++ +A +L + MP +     W A++
Sbjct: 640 LLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 670


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 264/525 (50%), Gaps = 49/525 (9%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G+V+EA  +  +M     +PD  +  S +T   R   L   + L     R +P     +
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYV 328

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              SAM++ Y K G   EA++VF  + + N  SWT LI G+ +     E   LF++M  +
Sbjct: 329 A--SAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 119 LKNV--VSWTTVVLGCAHN--------------------GLIAKLEVISWTTMCTGLERN 156
           L  V   +  T++ GC +                      ++    +IS    C  L+  
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQN- 445

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                A   F  M  +DIV+W  MITAY   GN+A+A E F+ M  RNV TWNAM+  Y 
Sbjct: 446 -----AELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYI 500

Query: 217 RNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
           ++G E   +K+ + M   +  +P+  T  ++   C  +  N L   +    +++G   +T
Sbjct: 501 QHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDT 560

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y          ++ AR AF+ L  KD+VSW AMI  YS HG G Q   +F 
Sbjct: 561 SVVNAVITMYSKCG-----RISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD 615

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            +L  G KPD I++V VLS CSH+GLVE+G+  F++M R +   P  EH+SC+ D+L RA
Sbjct: 616 DILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRA 675

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G + EA  ++ +MP       V GALL AC+ HG+  +A+   + L +L    SG Y+L 
Sbjct: 676 GHLIEAKNLIDEMPMKPTAE-VWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLL 734

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           A ++A  G+ D+ AQVRK M ++ +KK   +S +EV  + H   A
Sbjct: 735 AKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKA 779



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 189/454 (41%), Gaps = 51/454 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  +L    L  A  L R    ++ N++  + M++GY K G + +A ++F  +   +V
Sbjct: 65  TLLHAYLSCGALSDARNLLRD-EITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123

Query: 90  YSWTSLISGYFKARQVDEGRRLF-------DRMP--------LKLKNVVSWTTVVLGCAH 134
            SW +++SGY+++ Q      +F       D +P        +K    + W  V L    
Sbjct: 124 ASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLL- 182

Query: 135 NGLIAKLEVIS----WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            GL++K +        T +   L R      A + F ++ N  I+  N+M+  Y  +  +
Sbjct: 183 -GLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGV 241

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A E+F  MP+R+V +WN +I   +++G    A+ ++  M      P+ TT TS LT+C
Sbjct: 242 DHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTAC 301

Query: 251 EGM--LE-NMLAHALAIR-------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
             +  LE     H   IR               L  KC C               A+  F
Sbjct: 302 ARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC------------FKEAKRVF 349

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
             L  ++ VSWT +I  +  +G   +   LF +M       D+     ++S C +   + 
Sbjct: 350 SSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDIC 409

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            G +  +L  ++ G        + L  +  + G ++ A  + + M   ERD V    ++ 
Sbjct: 410 LGSQLHSLCLKS-GHTRAVVVSNSLISMYAKCGNLQNAELIFNFMA--ERDIVSWTGMIT 466

Query: 421 ACRLHGDVRMA----DYIGERLIELQPSSSGAYV 450
           A    G++  A    D +  R +    +  GAY+
Sbjct: 467 AYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYI 500



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 148/338 (43%), Gaps = 32/338 (9%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           +SQ +   ++A++D  V+ G +D A K F  I    +    S++ GY K+  VD    +F
Sbjct: 189 DSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIF 248

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAM 158
             MP   ++VVSW  V+   + +G +               + +  ++T+  T   R + 
Sbjct: 249 KSMP--ERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSS 306

Query: 159 TKLAREYFVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            +  ++  VQ    +P+ D    +AM+  Y   G   +A  +F+ +  RN  +W  +I  
Sbjct: 307 LEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGG 366

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE 271
           + + G    +++L N M       ++    ++++ C   ++  L    H+L ++ G  + 
Sbjct: 367 FLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRA 426

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
             ++      Y         ++ +A L F  +  +D+VSWT MI AYS  G+  +    F
Sbjct: 427 VVVSNSLISMYAKCG-----NLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFF 481

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
             M    +  + IT+  +L      G  E G K ++ M
Sbjct: 482 DDM----STRNVITWNAMLGAYIQHGAEEDGLKMYSDM 515


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 248/463 (53%), Gaps = 28/463 (6%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           ++++  +A++  Y  +  + +ARK+FDE+ + +V SWT+L+ GY +    DE  R+F RM
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLE---------VISWTTMCTGLERNAMTKL----- 161
            +      +  T+V   +  G I  L          V S   M   LE NA+  +     
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLE-NALVDMFGKCG 282

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               A+E F  MP KD+ +W +M++AY   G++  A +LF  +P RN  +W+ M+  Y++
Sbjct: 283 CVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQ 342

Query: 218 -NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276
            N PE  AM++ N M  +   P + T  S+L++C  +    +   L        +  LT 
Sbjct: 343 ANLPE-EAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTV 401

Query: 277 KCTCHYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             +  ++  F   G   DV +A   F  +E K+VVSW  MI+A++ HG   +   LF + 
Sbjct: 402 NLSNAFIDMFAKCG---DVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKF 458

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
              G  PDEIT++GVLS CSH+GLV +GR  F  M   YG +PRAEHY+C+ D+L + G 
Sbjct: 459 KAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGL 518

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           ++EA  V   MP    D    GALL ACR+HG+V +     ++L+ L PS SG YVL + 
Sbjct: 519 LEEAFEVARSMPVGA-DEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQ 577

Query: 455 VHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           ++A++ +W +   +R  M +R VKK    S IEV GK H  LA
Sbjct: 578 IYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLA 620



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 24/199 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V  A ++FD M   D  S  SM++ + +  DL  A  LF+ +P   RN V+ S 
Sbjct: 278 FGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIP--NRNAVSWSC 335

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           M+  Y +A   +EA ++F+++    V     +  S++S   +   +D GR L+D   +  
Sbjct: 336 MVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSH 395

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K  +   TV L  A   + AK   +                 A   F  M +K++V+WN 
Sbjct: 396 KVEL---TVNLSNAFIDMFAKCGDVG---------------AASRLFRNMEDKNVVSWNT 437

Query: 180 MITAYVDAGNMAQASELFN 198
           MI A+   G   +A  LF 
Sbjct: 438 MIVAHALHGQSEEALHLFQ 456


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 261/511 (51%), Gaps = 42/511 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G VK A +LFD M   D VS  +MI+ +++   + +A  LF +MP    ++  
Sbjct: 134 VSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVC- 192

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++ GYV+ G +  A  +F ++   N  SW  +I+GY +A  +   +RLFD MP K  
Sbjct: 193 -NALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK-- 249

Query: 121 NVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +V+S T ++ G   NG +             + ++W TM  G  RN     A + F +MP
Sbjct: 250 DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP 309

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D ++W+A++  YV  G+M  A+  F   P ++  +WN +I  Y   G    A+ LL+ 
Sbjct: 310 DRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEG----ALSLLSE 365

Query: 231 MFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTC 280
           M +    P++ T + +++ C  ++      + H  AI+ GFE +        S+  KC  
Sbjct: 366 MIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGL 425

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                       ++ A   FE +  +D V+W AMI  Y+ HG   +  ++F  M K+G +
Sbjct: 426 ------------ISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFR 473

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD  TF+ +LS C+H G + +G   F  M   +   PR++HYSC+ D+L R+G + +A  
Sbjct: 474 PDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYD 533

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
              ++P   R       L  AC  HG++++ + I   +++ +PS  G Y L +N++AA+ 
Sbjct: 534 FTRRIPSDHRT-TAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKE 592

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
            W   A VR  M ER +KK    S IE+KG+
Sbjct: 593 MWSSAASVRGFMKERGLKKETGCSWIELKGE 623



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 208/422 (49%), Gaps = 35/422 (8%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDE 76
           FDEMS+ +  +   M++  +RN  L +A  +F AMP   RN V+ +A++ GY + GRV E
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP--VRNSVSWAALLTGYARCGRVAE 114

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR++F+ I + NV SW +++SGY +   V   R LFD MP   ++ VSW T++ G     
Sbjct: 115 ARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMP--WRDDVSWLTMISGYIKRK 172

Query: 137 LIAKLEVI------SWTTMCTGLERN----AMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
            + +   +        T++C  L          + A   F QM  ++ V+WN MIT Y  
Sbjct: 173 HVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYAR 232

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           AG+M  A  LF+ MP+++V +  A++  Y +NG   AA K+       + MP+  T  + 
Sbjct: 233 AGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVF------KDMPHRDT-VAW 285

Query: 247 LTSCEGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            T  +G + N  L  AL +         +++    H +   +  Q D++SA + F R   
Sbjct: 286 NTMMDGFVRNDRLDDALKLFSEMPDRDQISW----HAILQGYVQQGDMDSANVWFPRAPN 341

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG-RK 364
           KD +SW  +I  Y + G       L + M++ G KPD+ T   V+S C  A LV  G  K
Sbjct: 342 KDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISIC--ASLVSLGCGK 395

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
             +L +   GF+  A   S L  +  + G + EA +V   +   +RD V   A++     
Sbjct: 396 MVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELI--LQRDTVTWNAMIATYAY 453

Query: 425 HG 426
           HG
Sbjct: 454 HG 455



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 33/301 (10%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           +++  V +W  M +GL RN M   AR+ F  MP ++ V+W A++T Y   G +A+A ELF
Sbjct: 60  MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           N +P RNV +WNAM+  YARNG    A +L ++      MP      S LT   G ++  
Sbjct: 120 NRIPDRNVVSWNAMVSGYARNGMVKRARELFDM------MPWRDD-VSWLTMISGYIKR- 171

Query: 258 LAHALAIRLGFEQ----ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
             H    R  F+      TS+       YV  + G+   + +A + F +++ ++ VSW  
Sbjct: 172 -KHVREARELFDSMPSPPTSVCNALLSGYV--ELGY---MRAAEVLFGQMQTRNPVSWNV 225

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI  Y+  G      RLF  M     + D ++   ++      G V+   K F  M    
Sbjct: 226 MITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVDAAWKVFKDM---- 277

Query: 374 GFKPRAEH--YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
              P  +   ++ + D   R  ++ +A+++ S+MP  +RD +   A+L      GD+  A
Sbjct: 278 ---PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMP--DRDQISWHAILQGYVQQGDMDSA 332

Query: 432 D 432
           +
Sbjct: 333 N 333


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 247/487 (50%), Gaps = 74/487 (15%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MI GY++  + D AR +FD++ E +++SW  +++GY + R +   R LF+RMP +     
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----- 55

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                             +++SW  M +G  +N     ARE F +MP K+ ++WN ++ A
Sbjct: 56  ------------------DIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAA 97

Query: 184 YVDAGNMAQASELF-----------------------NL---MPQRNVWTWNAMIDRYAR 217
           YV  G +  A  LF                       NL   MPQR+  +W+AMI  Y++
Sbjct: 98  YVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQ 157

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ---- 270
           NG    A+     M +     N ++ T  L++C  +    L   L  RL   G++     
Sbjct: 158 NGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYV 217

Query: 271 -ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
               L   C C            ++ AR AF+ +  KDVVSW  MI  Y+ HG G +   
Sbjct: 218 GNALLAMYCKCG----------SIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALT 267

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           +F  M  +G +PD+ T V VL+ CSHAGLV++G + F  M+R YG   +  HY+C+ D+L
Sbjct: 268 VFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLL 327

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            RAGQ++EA  ++  M P E D    GALLGA R+HG+  + +   + + E++P +SG Y
Sbjct: 328 GRAGQLEEAQNLMKNM-PFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMY 386

Query: 450 VLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGY 503
           +L + ++AA G W +  ++R +M  + VKKV  +S +EV+ K HT        P  +  Y
Sbjct: 387 ILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIY 446

Query: 504 VVLKEVD 510
             L+E+D
Sbjct: 447 TFLEEMD 453



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 138/291 (47%), Gaps = 58/291 (19%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K   A  LFD+M + D  S   M+T ++RN DL  A ALF  MPE  R+IV+ +AM+ GY
Sbjct: 10  KFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPE--RDIVSWNAMLSGY 67

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            + G VDEAR++F ++   N  SW  L++ Y +  ++++ +RLF+       + + WT V
Sbjct: 68  AQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE-------SKMDWTLV 120

Query: 129 VLGCAHNGLIAK----------LEVISWTTMCTGLERNAMTKLAREYFVQMPN------- 171
              C   G + K           + ISW+ M  G  +N  ++ A  +FV+M         
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 172 ----------KDIVA-------------------W---NAMITAYVDAGNMAQASELFNL 199
                      +I A                   W   NA++  Y   G++ +A + F  
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + +++V +WN MI  YAR+G    A+ +  LM  +   P++ T  S+L +C
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAAC 291



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 68/272 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQR---------- 56
           G V++   LFD M Q D +S ++MI  + +N    +A   F  M  + +R          
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 57  ----NIVA----------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
               NI A                       +A++  Y K G +DEAR  F EI E +V 
Sbjct: 188 STCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVV 247

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SW ++I GY +    +E   +F+ M       +  +  +V+  C+H GL+ +        
Sbjct: 248 SWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQ-------- 299

Query: 149 MCTGLERNAMTKLAREYFVQMPNKD------IVAWNAMITAYVDAGNMAQASELFNLMP- 201
                          EYF  M N+D      +V +  M+     AG + +A  L   MP 
Sbjct: 300 -------------GSEYFYSM-NRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPF 345

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           + +  TW A++     +G      K   ++F+
Sbjct: 346 EPDAATWGALLGASRIHGNTELGEKAAQIIFE 377


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 247/479 (51%), Gaps = 43/479 (8%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLI 96
           DL  AE  F +     +     + ++ GY KA   GR+ +AR++FD I   +  S+ +L+
Sbjct: 22  DLAGAEEAFAS--TQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLL 79

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV----------ISW 146
           S +F    +D   R+F  MP++  +V SW T+V G + NG I + E           +SW
Sbjct: 80  SCHFACGDIDGAWRVFSTMPVR--DVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSW 137

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
             M      +     A   F   P K D + W AM++ Y+D GN+ +A E F  MP RN+
Sbjct: 138 NAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNL 197

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLE---NMLAHA 261
            +WNA++  Y +N   G A+++   M +   + PN +T +S+L  C  +         H 
Sbjct: 198 VSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQ 257

Query: 262 LAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             ++L   +  +     L+  C C           D++ A   F+ +  KD+V+W AMI 
Sbjct: 258 WCMKLPLGRSITVGTSLLSMYCKCG----------DLDDACKLFDEMHTKDIVAWNAMIS 307

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y+ HG G +  +LF +M   G  PD IT + VL+ C H GL + G + F  M  AY  +
Sbjct: 308 GYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIE 367

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYI 434
           P+ +HYSC+ D+L RAG ++ A+ ++  MP  PH   +   G LL ACR++ ++  A++ 
Sbjct: 368 PQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAY---GTLLTACRVYKNLEFAEFA 424

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             +LIE  P ++GAYV  AN++A    WD+ ++VR+ M +  V K   +S +E+KG  H
Sbjct: 425 ARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRH 483



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 25/270 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           +  F C G +  A ++F  M   D  S  +M++   +N  + +AEA+FRAMP   RN V+
Sbjct: 80  SCHFAC-GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP--ARNAVS 136

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYE-GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            +AM+     +G +  A  +F    E  +   WT+++SGY     V +    F  MP  +
Sbjct: 137 WNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMP--V 194

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTGLERNAMTKL 161
           +N+VSW  VV G   N        +  T +                  C+ L      + 
Sbjct: 195 RNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQ 254

Query: 162 AREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
             ++ +++P  + I    ++++ Y   G++  A +LF+ M  +++  WNAMI  YA++G 
Sbjct: 255 VHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGG 314

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              A+KL   M     +P+  T  ++LT+C
Sbjct: 315 GRKAIKLFEKMKDEGVVPDWITLLAVLTAC 344


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 258/504 (51%), Gaps = 44/504 (8%)

Query: 6   CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           C+  V  A KLFDEM + D ++  +MIT ++RN DL  A  +F AM E+     A +AMI
Sbjct: 205 CSAMVS-ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG--AAWNAMI 261

Query: 66  DGYVKAGRVDEA----RKV------FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            GYV  G   EA    RK+      FD+I      ++T++IS          G+++   +
Sbjct: 262 SGYVHCGCFQEALTLCRKMRFLGIQFDDI------TYTTIISACANVGSFQMGKQVHAYI 315

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
              LKN ++          N LI        T  C    +N     AR+ F  MP ++I+
Sbjct: 316 ---LKNELNPNHSFCLSVSNALI--------TLYC----KNNKVDEARKIFYAMPVRNII 360

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            WNA+++ YV+AG M +A   F  MP +N+ T   MI   A+NG     +KL   M    
Sbjct: 361 TWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG 420

Query: 236 FMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           F P +      LT+C   G LEN    HA  + LG+E   S+       Y     G    
Sbjct: 421 FEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA--KCGV--- 475

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V +A   F  + + D+VSW +MI A   HGHG +   LF +MLK G  PD ITF+ VL+ 
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGLVEKGR  FN M  +YG  P  +HY+ + D+  RAG    A  V+  MP  +   
Sbjct: 536 CSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPS-KPGA 594

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V  ALL  CR+HG++ +     E+L +L P + G YVL +N++A  G W+E A+VRK M
Sbjct: 595 PVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLM 654

Query: 473 -ERRVKKVASFSQIEVKGKDHTLL 495
            ++ V+K  + S IEV+ K H  +
Sbjct: 655 RDQAVRKEPACSWIEVENKVHVFM 678



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 193/454 (42%), Gaps = 55/454 (12%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A +LF+E+  PD ++  ++IT +    +L     +F   P   R+ V  +AMI GY   G
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 73  RVDEARKVFDEI----YEGNVYSWTSLISG--YFKARQVDEGRRLFDRMPLKLKNVVSWT 126
               A ++F  +    +  + +++TS++S    F   +   G         ++   V  T
Sbjct: 127 DGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG---------QMHCAVVKT 177

Query: 127 TVVLGCAHNGLI-AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
              +GC  + ++ A L V        G+  +AM   AR+ F +MP +D + W  MIT YV
Sbjct: 178 G--MGCVSSSVLNALLSVYVKRASELGISCSAMVS-ARKLFDEMPKRDELTWTTMITGYV 234

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
              ++  A E+F  M +     WNAMI  Y   G    A+ L   M       ++ T T+
Sbjct: 235 RNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294

Query: 246 ILTSCEG-------------MLENML--AHALAIRLG------------FEQETSLTYKC 278
           I+++C               +L+N L   H+  + +              ++   + Y  
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 279 TCHYVF-WDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
               +  W+      VN+ R+      FE +  K++++ T MI   + +G G +  +LF 
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           +M   G +P +  F G L+ CS  G +E GR+    +    G++      + +  +  + 
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKC 473

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           G V+ A  V   MP    D V   +++ A   HG
Sbjct: 474 GVVEAAESVFVTMP--SVDLVSWNSMIAALGQHG 505


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/535 (30%), Positives = 262/535 (48%), Gaps = 74/535 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA  LFD M   + VS  +M++ +LRN  + +A  LF AMP   R+ V+   M+ G
Sbjct: 112 GRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPA--RDDVSWLMMVSG 169

Query: 68  YVKAGRVDEARKVFDEI---------------YEGNVY-----------------SWTSL 95
           Y++  R  EAR++FD                 Y G  Y                 SW ++
Sbjct: 170 YMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAM 229

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI----------AKLEVIS 145
           I+GY +A  +   RRLFD MP K  + VSWT +V G   NG +             +V++
Sbjct: 230 ITGYTRAGMMQVARRLFDEMPGK--DTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLA 287

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W TM  G   +     A   F  MP++D+V+WN ++  Y+  G+M  A+  F  M +++ 
Sbjct: 288 WNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDE 347

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHAL 262
            +WN +I  Y   G    A+ LL+ M +  + P++ T + +++ C  +       + H  
Sbjct: 348 TSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHIC 403

Query: 263 AIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
            I+ GFE +        S+  KC              +  A   F+ +  +D V+W AMI
Sbjct: 404 TIKTGFEHDALVMSSLISMYSKCGL------------ITEASQVFDLIVQRDTVTWNAMI 451

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
             Y+ HG   +   LF RM K    PD  TF+ VLS C+H G + +G   F  M + +  
Sbjct: 452 ATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNL 511

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            PR++HYSC+ D+L R+G V +A     K+P + + +     L  +C  HGD+++ + + 
Sbjct: 512 VPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQIN-AWETLFSSCNAHGDIQLGELVA 570

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
           + +++ +PS  G Y L +N++AA+G W   A VR  M E+ +KK    S IE+KG
Sbjct: 571 KNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKG 625



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 188/459 (40%), Gaps = 88/459 (19%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I  + +AGRV  AR+VFDE+ E NV++W  ++SG  +   + + R +FD MP   +N VS
Sbjct: 43  IMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP--SRNSVS 100

Query: 125 WTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           W  ++ G A  G +A+            V+SW  M +G  RN M   ARE F  MP +D 
Sbjct: 101 WAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDD 160

Query: 175 VAW--------------------------------NAMITAYVDAGNMAQASELFNLMPQ 202
           V+W                                NA+++ Y   G +  A ELF  M +
Sbjct: 161 VSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQR 220

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLM---------------------------FQSR 235
            +  +WNAMI  Y R G    A +L + M                           FQ  
Sbjct: 221 PDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQD- 279

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF--QLDV 293
            MP+             ++ + L  AL +         +++           G+  Q D+
Sbjct: 280 -MPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQ------GYIQQGDM 332

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           +SA   F  +  KD  SW  +I  Y + G       L + M + G +PD+ T+  V+S C
Sbjct: 333 DSATTWFRSMLEKDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVC 388

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +  GR   ++ +   GF+  A   S L  +  + G + EA +V   +   +RD V
Sbjct: 389 ASLAALGCGRMV-HICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIV--QRDTV 445

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
              A++     HG    A  + +R+ + + S   A  LS
Sbjct: 446 TWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLS 484



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 151/361 (41%), Gaps = 43/361 (11%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           + G+V  W S I  +F+A +V   RR+FD M  +                        V 
Sbjct: 32  HAGDVGRWNSDIMAHFRAGRVGAARRVFDEMRER-----------------------NVF 68

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           +W  M +GL RN +   AR  F  MP+++ V+W A++T Y   G +A+A +LF+ MP RN
Sbjct: 69  TWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRN 128

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V +WNAM+  Y RNG    A +L +       MP     + ++     M       A  I
Sbjct: 129 VVSWNAMVSGYLRNGMVDRARELFDA------MPARDDVSWLMMVSGYMRRKRFREAREI 182

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
              F++  S      C+ +   +     +  A   F R++  D VSW AMI  Y+  G  
Sbjct: 183 ---FDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMM 239

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
               RLF  M       D +++  ++      G V+   + F  M            ++ 
Sbjct: 240 QVARRLFDEM----PGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMP-----DRDVLAWNT 290

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           +      + ++ +A+R+ + MP  +RD V    +L      GD+  A      ++E   +
Sbjct: 291 MMGGFVVSDRLDDALRLFADMP--DRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDET 348

Query: 445 S 445
           S
Sbjct: 349 S 349



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 58/250 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F  + ++ +A +LF +M   D VS  +++  +++  D+  A   FR+M E          
Sbjct: 295 FVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEK--------- 345

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR-RLFDRMPLK--LK 120
                      DE              SW ++ISGY      DEG   L   M       
Sbjct: 346 -----------DET-------------SWNTVISGY-----KDEGALSLLSEMTRGGYRP 376

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           +  +W+ V+  CA    +    ++   T+ TG E +A+                   +++
Sbjct: 377 DQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALVM-----------------SSL 419

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I+ Y   G + +AS++F+L+ QR+  TWNAMI  YA +G    A+ L + M + RF P+ 
Sbjct: 420 ISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDH 479

Query: 241 TTCTSILTSC 250
            T  S+L++C
Sbjct: 480 ATFLSVLSAC 489


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 178/606 (29%), Positives = 301/606 (49%), Gaps = 110/606 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G  ++A K+FD M Q +  S  ++++V  +   L +A  +F++MPE  +   + +A
Sbjct: 64  YGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQ--CSWNA 121

Query: 64  MIDGYVKAGRVDEARKVFDEI--------------------------------------- 84
           M+ G+ +  R +EA + F ++                                       
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSR 181

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV 143
           Y  +VY  ++L+  Y K   V   +R FD M ++  N+VSW +++     NG   K LEV
Sbjct: 182 YLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR--NIVSWNSLITCYEQNGPAGKALEV 239

Query: 144 I-----------------------SWTTMCTGLE-----------------RNAMTKL-- 161
                                   SW+ +  GL+                  NA+  +  
Sbjct: 240 FVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYA 299

Query: 162 -------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                  AR  F +MP +++V+  +M+  Y  A ++  A  +F+ M ++NV +WNA+I  
Sbjct: 300 KCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAG 359

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGF--- 268
           Y +NG    A++L  L+ +    P   T  ++L +C  + +  L   AH   ++ GF   
Sbjct: 360 YTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQ 419

Query: 269 -EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
             +E+ +    +   ++   G    V    L FER+  +DVVSW AMI+ Y+ +G+G   
Sbjct: 420 SGEESDIFVGNSLIDMYMKCGM---VEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNA 476

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F +ML SG KPD +T +GVLS CSHAGLVE+GR+ F+ M    G  P  +H++C+ D
Sbjct: 477 LEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVD 536

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG + EA  ++  M P + D+VV G+LL AC++HG++ +  Y+ E+L+E+ P +SG
Sbjct: 537 LLGRAGCLDEANDLIQTM-PMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSG 595

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREM 501
            YVL +N++A  G W +  +VRK+M +R V K    S IE++ + H  +      P+++ 
Sbjct: 596 PYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKD 655

Query: 502 GYVVLK 507
            ++VLK
Sbjct: 656 IHLVLK 661



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 205/475 (43%), Gaps = 89/475 (18%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAG 72
           KL  E+   D    A ++   +R+     A  +   + ++Q    I  ++ ++D Y K G
Sbjct: 9   KLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCG 68

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
             ++ARKVFD + + N +S+ +++S   K  ++DE   +F  MP    +  SW  +V G 
Sbjct: 69  YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMP--EPDQCSWNAMVSGF 126

Query: 133 AHNG-----------------LIAKLEVISWTTMCTGL-------ERNAMTKLAREYFVQ 168
           A +                  ++ +    S  + C GL       + +A+   +R Y + 
Sbjct: 127 AQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSR-YLL- 184

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
               D+   +A++  Y   G +A A   F+ M  RN+ +WN++I  Y +NGP G A+++ 
Sbjct: 185 ----DVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240

Query: 229 NLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAI--------------------- 264
            +M  +   P+E T  S++++C     + E +  HA  +                     
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300

Query: 265 -------RLGFEQ--------ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
                  RL F++        ETS+     C Y          V +ARL F  +  K+VV
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSM----VCGY-----ARAASVKAARLMFSNMMEKNVV 351

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-NL 368
           SW A+I  Y+ +G   +  RLF  + +    P   TF  +L+ C++   ++ GR+    +
Sbjct: 352 SWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQI 411

Query: 369 MSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           +   + F+   E      + L D+  + G V++   V  +M   ERD V   A++
Sbjct: 412 LKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMV--ERDVVSWNAMI 464


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 239/462 (51%), Gaps = 39/462 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           SAM++ Y K G   EAR+VF  + + N  SWT LI G+ +     E   LF++M  +L  
Sbjct: 333 SAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMT 392

Query: 122 V--VSWTTVVLGCAHN--------------------GLIAKLEVISWTTMCTGLERNAMT 159
           V   +  T++ GC++                      ++    +IS    C  L+     
Sbjct: 393 VDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQN---- 448

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
             A   F  M  +DIV+W  M+TAY   GN+ +A E F+ M  RNV TWNAM+  Y ++G
Sbjct: 449 --AESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHG 506

Query: 220 PEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALA---IRLGFEQETSLT 275
            E   +K+ + M   +  +P+  T  ++   C  M  N L   +    +++G   +TS+ 
Sbjct: 507 AEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVM 566

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                 Y          ++ AR  F+ L  KD+VSW AMI  YS HG G Q   +F  ML
Sbjct: 567 NAVITMYSKCG-----RISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDML 621

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           K G KPD I++V VLS CSH+GLV++G+  F+++ R +   P  EH+SC+ D+L RAG +
Sbjct: 622 KKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNL 681

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            EA  ++ +MP       V GALL AC+ HG+  +A+   + L +L    SG Y+L A +
Sbjct: 682 IEAKNLIDEMPMKPTAE-VWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKI 740

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +A  G+  + AQVRK M ++ +KK   +S +EVK K H   A
Sbjct: 741 YADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKA 782



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 185/454 (40%), Gaps = 51/454 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  +L    LP A  L R    ++ N++  + M++GY K G + +A ++F  +   +V
Sbjct: 68  TLLHAYLSCGALPDARGLLRG-DITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDV 126

Query: 90  YSWTSLISGYFKARQVDEG-------RRLFDRMP--------LKLKNVVSWTTVVLGCAH 134
            SW +L+SGY+++ +  +        RR  D +P        +K    + W  V L    
Sbjct: 127 TSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLL- 185

Query: 135 NGLIAKLEVISWTTMCTGLE----RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            GL+ K        + TG+     R      A + F Q+    +   N+M+  Y  +  +
Sbjct: 186 -GLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGV 244

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A ELF  MP+R+V +WN M+   +++G    A+ +   M       + TT TS LT+C
Sbjct: 245 DHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTAC 304

Query: 251 EGMLE---NMLAHALAIR-------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
             +         HA  IR               L  KC C               AR  F
Sbjct: 305 AKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC------------FKEARRVF 352

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
             L  ++ VSWT +I  +  +G   +   LF +M       D+     ++S CS+   + 
Sbjct: 353 SSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMC 412

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
             R+  +L S   G        + L  +  + G ++ A  + S M   ERD V    +L 
Sbjct: 413 LARQLHSL-SLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSM--EERDIVSWTGMLT 469

Query: 421 ACRLHGDVRMA----DYIGERLIELQPSSSGAYV 450
           A    G++  A    D +  R +    +  GAY+
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYI 503



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 116/224 (51%), Gaps = 22/224 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+I+++ +  +L  AE++F +M E  R+IV+ + M+  Y + G + +AR+ FD +   NV
Sbjct: 435 SLISMYAKCGNLQNAESIFSSMEE--RDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV 492

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL---GCAHNGLIAKLEVISW 146
            +W +++  Y +    ++G +++  M  +   +  W T V    GCA  G     + I+ 
Sbjct: 493 ITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITG 552

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            T+  GL                   D    NA+IT Y   G +++A ++F+ + ++++ 
Sbjct: 553 HTVKVGLIL-----------------DTSVMNAVITMYSKCGRISEARKIFDFLSRKDLV 595

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +WNAMI  Y+++G    A+++ + M +    P+  +  ++L+SC
Sbjct: 596 SWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSC 639



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 26/205 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           G++ EA K+FD +S+ D VS  +MIT + ++    +A  +F  M +  ++ + ++  A++
Sbjct: 577 GRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVL 636

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                +G V E +  FD +   +  S     ++ ++    +A  + E + L D MP+K  
Sbjct: 637 SSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPT 696

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
             V W  ++  C  +G                   N + +LA ++   + + D   +  +
Sbjct: 697 AEV-WGALLSACKTHG------------------NNELAELAAKHLFDLDSPDSGGYMLL 737

Query: 181 ITAYVDAGNMAQASELFNLMPQRNV 205
              Y DAG    ++++  LM  + +
Sbjct: 738 AKIYADAGKSVDSAQVRKLMRDKGI 762


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 267/525 (50%), Gaps = 49/525 (9%)

Query: 7   TGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G+V+EA  +  +M       D  +  S +T   R   L   + L     R +P     +
Sbjct: 248 SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYV 307

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              SA+++ Y K G   EA+ VF+ +++ N  +WT LI+G+ +     E   LF++M  +
Sbjct: 308 A--SALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 119 LKNV--VSWTTVVLGCAH--------------------NGLIAKLEVISWTTMCTGLERN 156
           L  +   +  T++ GC                        ++    +IS    C  L+  
Sbjct: 366 LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQS- 424

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                A   F  M  KDIV+W +MITA+   GN+A+A E F+ M  +NV TWNAM+  Y 
Sbjct: 425 -----AESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYI 479

Query: 217 RNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
           ++G E   +++ N+M   +   P+  T  ++   C  +  N L   +    +++G   +T
Sbjct: 480 QHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDT 539

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y     G  L+   AR  F+ L  KD+VSW AMI  YS HG G Q   +F 
Sbjct: 540 SVANAVITMYS--KCGRILE---ARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            +LK G KPD I++V VLS CSH+GLV++G+  F++M R +   P  EH+SC+ D+L RA
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRA 654

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G + EA  ++ +MP       V GALL AC++HG+  +A+   + + EL    SG+Y+L 
Sbjct: 655 GHLTEAKDLIDEMPMKPTAE-VWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLM 713

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           A ++A  G+ D+ AQ+RK M ++ +KK   +S +EV  K H   A
Sbjct: 714 AKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKA 758



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 32/345 (9%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           SQ +    +A++D +V+ G VD A ++F  I E  ++   S++ GY K   VD    LFD
Sbjct: 169 SQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFD 228

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMT 159
            MP   ++VVSW  +V   + +G +               +L+  ++T+  T   R +  
Sbjct: 229 SMP--ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSL 286

Query: 160 KLAREYFVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           +  ++   Q    +P  D    +A++  Y   G   +A  +FN +  RN   W  +I  +
Sbjct: 287 RWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGF 346

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET 272
            ++G    +++L N M       ++    ++++ C   ++  L    H+L ++ G  Q  
Sbjct: 347 LQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAV 406

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            ++      Y   D     ++ SA   F  +  KD+VSWT+MI A+S  G+  +    F 
Sbjct: 407 VVSNSLISMYAKCD-----NLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFD 461

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
            M    +  + IT+  +L      G  E G + +N+M      +P
Sbjct: 462 GM----STKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 49/371 (13%)

Query: 34  VFLRNHDLPKAEALFRAMPESQR---------NIVAESAMIDGYVKAGRVDEARKVFDEI 84
           VFL+N  L  A     A+P+++R         N++  + M++GYVK GR+ +A ++F  +
Sbjct: 39  VFLQN-TLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRM 97

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLF-------DRMP------LKLKNVVSWTTVVLG 131
              +V SW +L+SGYF+++Q       F       D  P        +K+  +     L 
Sbjct: 98  PARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLA 157

Query: 132 CAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
               G++ K      + +   L     R     LA   FV++    I   N+M+  YV  
Sbjct: 158 LQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKT 217

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             +  A ELF+ MP+R+V +WN M+   +++G    A+ ++  M       + TT TS L
Sbjct: 218 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 248 TSCEGMLE---NMLAHALAIR-------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           T+C  +         HA  IR               L  KC C               A+
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC------------FKEAK 325

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F  L  ++ V+WT +I  +  HG   +   LF +M       D+     ++S C    
Sbjct: 326 GVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRM 385

Query: 358 LVEKGRKTFNL 368
            +  GR+  +L
Sbjct: 386 DLCLGRQLHSL 396


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 258/504 (51%), Gaps = 44/504 (8%)

Query: 6   CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           C+  V  A KLFDEM + D ++  +MIT ++RN DL  A  +F AM E+     A +AMI
Sbjct: 205 CSAMVS-ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG--AAWNAMI 261

Query: 66  DGYVKAGRVDEA----RKV------FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            GYV  G   EA    RK+      FD+I      ++T++IS          G+++   +
Sbjct: 262 SGYVHCGCFQEALTLCRKMRFLGIQFDDI------TYTTIISACANVGSFQMGKQMHAYI 315

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
              LKN ++          N LI        T  C    +N     AR+ F  MP ++I+
Sbjct: 316 ---LKNELNPNHSFCLSVSNALI--------TLYC----KNNKVDEARKIFYAMPVRNII 360

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            WNA+++ YV+AG M +A   F  MP +N+ T   MI   A+NG     +KL   M    
Sbjct: 361 TWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDG 420

Query: 236 FMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           F P +      LT+C   G LEN    HA  + LG+E   S+       Y     G    
Sbjct: 421 FEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA--KCGV--- 475

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V +A   F  + + D+VSW +MI A   HGHG +   LF +MLK G  PD ITF+ VL+ 
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGLVEKGR  FN M  +YG  P  +HY+ + D+  RAG    A  V+  MP  +   
Sbjct: 536 CSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPS-KPGA 594

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V  ALL  CR+HG++ +     E+L +L P + G YVL +N++A  G W++ A+VRK M
Sbjct: 595 PVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLM 654

Query: 473 -ERRVKKVASFSQIEVKGKDHTLL 495
            ++ V+K  + S IEV+ K H  +
Sbjct: 655 RDQAVRKEPACSWIEVENKVHVFM 678



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 193/460 (41%), Gaps = 55/460 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +  V  A +LF+E+  PD ++  ++IT +    +L     +F   P   R+ V  +AMI 
Sbjct: 61  SSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 67  GYVKAGRVDEARKVFDEI----YEGNVYSWTSLISG--YFKARQVDEGRRLFDRMPLKLK 120
           GY   G    A ++F  +    +  + +++TS++S    F   +   G         ++ 
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG---------QMH 171

Query: 121 NVVSWTTVVLGCAHNGLI-AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
             V  T   +GC  + ++ A L V        G+  +AM   AR+ F +MP +D + W  
Sbjct: 172 CAVVKTG--MGCVSSSVLNALLSVYVKRASELGIPCSAMVS-ARKLFDEMPKRDELTWTT 228

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           MIT YV   ++  A E+F  M +     WNAMI  Y   G    A+ L   M       +
Sbjct: 229 MITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFD 288

Query: 240 ETTCTSILTSCEG-----MLENMLAHALAIRLGFEQETSL-------TYKCTCHYV---- 283
           + T T+I+++C       M + M A+ L   L       L       T  C  + V    
Sbjct: 289 DITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 284 ------------FWDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQ 326
                        W+      VN+ R+      FE +  K++++ T MI   + +G G +
Sbjct: 349 KIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDE 408

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             +LF +M   G +P +  F G L+ CS  G +E GR+    +    G++      + + 
Sbjct: 409 GLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMI 467

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +  + G V+ A  V   MP    D V   +++ A   HG
Sbjct: 468 SMYAKCGVVEAAESVFVTMP--SVDLVSWNSMIAALGQHG 505


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/560 (30%), Positives = 278/560 (49%), Gaps = 69/560 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A   F+ M + +  S  +MI  F +   L  A  L+  +PE  + +  ++AM+ 
Sbjct: 409 NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE--QTVATKTAMMT 466

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            Y + GR+ +AR +FDEI   NV +W ++I+GY +   + E + LF +MP+K  N  SW 
Sbjct: 467 AYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK--NSASWA 524

Query: 127 TVVLG-----------------------------------CAHNGLIAKLEVISWTTMCT 151
            ++ G                                   CA+ G +    VI    + T
Sbjct: 525 AMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKT 584

Query: 152 GLERNA--MTKLAREY------------FVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           G + N+  M  L   Y            F  +  KD V+WN++I+   +   +  A  +F
Sbjct: 585 GCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVF 644

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
             MP+R+V +W A+I  Y + G    A+ L   M      PN+ T TS+L++C  +    
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 704

Query: 258 LA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
           L    HAL  +LGF+  T L    +   +++  G++         FE +   D+++W A+
Sbjct: 705 LGEQFHALIFKLGFD--TFLFVGNSLITMYFKCGYE----DGFCVFEEMPEHDLITWNAV 758

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           ++  + +G G +  ++F +M   G  PD+++F+GVL  CSHAGLV++G   FN M++ YG
Sbjct: 759 LVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYG 818

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
             P   HY+C+ D+L RAG + EA  ++  MP  + D V+  ALLGACR+H +V +   +
Sbjct: 819 IMPLVYHYTCMVDLLGRAGYLSEAEALIENMPV-KPDSVIWEALLGACRIHRNVELGQRV 877

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHT 493
            ERL ++    S  YVL +N+ A++G WD+ A++RK M ++ + K    S I+VK K H 
Sbjct: 878 AERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHC 937

Query: 494 LLAPMR-----EMGYVVLKE 508
            +   R     E  Y  LKE
Sbjct: 938 FVTGDRTHDQIEEIYSALKE 957



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 246/536 (45%), Gaps = 102/536 (19%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES-------- 54
           ++ EA +LFD+M + + VS   MI+ ++   D  +A  +F  M      P+         
Sbjct: 310 RMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLS 369

Query: 55  -----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                  + ++V  SA+++ Y + G +D A   F+ + E N YS
Sbjct: 370 AITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS 429

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           WT++I+ + +  ++D+  +L++R+P   + V + T ++   A  G I K           
Sbjct: 430 WTTMIAAFAQCGRLDDAIQLYERVP--EQTVATKTAMMTAYAQVGRIQK----------- 476

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
                     AR  F ++ N ++VAWNA+I  Y   G + +A +LF  MP +N  +W AM
Sbjct: 477 ----------ARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAM 526

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGF 268
           I  + +N     A++LL  + +S  +P++++ TS L++C  + +     + H+LAI+ G 
Sbjct: 527 IAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGC 586

Query: 269 EQET-------SLTYKC----TCHYVF----------WDW-------GFQLDVNSARLAF 300
           +  +       S+  KC       +VF          W+         + LD   AR+ F
Sbjct: 587 QFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLD--DARVVF 644

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           E++  +DVVSWTA+I AY   GHG     LF  ML  G KP+++T   +LS C + G ++
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 704

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            G + F+ +    GF       + L  +  + G  ++   V  +MP H  D +   A+L 
Sbjct: 705 LGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEH--DLITWNAVLV 760

Query: 421 ACRLHGDVRMADYIGERL-IE--LQPSSSGAYVLSANVHAARGE--WDEFAQVRKK 471
            C  +G  + A  I E++ +E  L    S   VL A  HA   +  W  F  + +K
Sbjct: 761 GCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQK 816



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 232/515 (45%), Gaps = 81/515 (15%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           + G  G+V+EA ++F+EM Q D VS  SMI  + +N  + +A  LF A     +NI   +
Sbjct: 180 ELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF--VGKNIRTWT 237

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            ++ GY K GR++EAR+VF+ + E NV SW ++ISGY +   +   R+LFD MP   KNV
Sbjct: 238 ILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP--EKNV 295

Query: 123 VSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQM--- 169
            SW +VV G  H   +++             +SW  M +G    +    A + FV+M   
Sbjct: 296 ASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRT 355

Query: 170 ---PNK---------------------------------DIVAWNAMITAYVDAGNMAQA 193
              P++                                 D+V  +A++ AY   G++  A
Sbjct: 356 VARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLA 415

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
              F  MP+RN ++W  MI  +A+ G    A++L         +P +T  T         
Sbjct: 416 MHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER------VPEQTVATKTAM----- 464

Query: 254 LENMLAHALAIRLGFEQETSLTYK--CTCHYVFWD---WGFQLD--VNSARLAFERLEAK 306
              M A+A   ++G  Q+  L +      + V W+    G+  +  +  A+  F+++  K
Sbjct: 465 ---MTAYA---QVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK 518

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +  SW AMI  +  +    +   L   + +SG+ P + +F   LS C++ G VE GR   
Sbjct: 519 NSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIH 578

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +L  +  G +  +   + L  +  + G V++   V   +    +D V   +L+     + 
Sbjct: 579 SLAIKT-GCQFNSYVMNGLISMYAKCGNVEDGSHVFRTI--RVKDTVSWNSLISGLSENY 635

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
            +  A  + E++ +    S  A ++SA V A  GE
Sbjct: 636 MLDDARVVFEKMPKRDVVSWTA-IISAYVQAGHGE 669



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 140/335 (41%), Gaps = 13/335 (3%)

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           A N    +  +    T    L R    + AR  F +M  +D+V+WN+MI  Y   G + +
Sbjct: 161 AKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDE 220

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  LF+    +N+ TW  ++  YA+ G    A ++   M +   +      +  + + + 
Sbjct: 221 ARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDL 280

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
                L   +  +      + +T  C C+           ++ AR  F+++  ++ VSW 
Sbjct: 281 KNARKLFDEMPEKNVASWNSVVTGYCHCY----------RMSEARELFDQMPERNSVSWM 330

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            MI  Y +    ++ + +F +M ++  +PD+  FV VLS  +    +E    +   ++  
Sbjct: 331 VMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLEL-IGSLRPIAIK 389

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP-HERDHVVLGALLGAC-RLHGDVRM 430
            G++      S + +   R G +  AM     MP  +E     + A    C RL   +++
Sbjct: 390 TGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQL 449

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            + + E+ +  + +   AY     +  AR  +DE 
Sbjct: 450 YERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI 484


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 248/470 (52%), Gaps = 46/470 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +++  +A++  Y     +D+A KVFDE+ E +V SWT+L+ GY +A   DE  RLF RM 
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 117 L---KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL------- 161
           +      N V+    V      GL+A   ++       G+ R     NA+  +       
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 162 --AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-N 218
             ARE F  M  KD+ +W +M+ AY   G++  A +LF  MP+RNV +W+ MI  Y++ N
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---------LENMLAH---ALAIRL 266
            PE  A+ L   M  +   P + T  S+L++C  +          EN +      L + L
Sbjct: 357 QPE-EAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL 415

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G      +  KC             DV  A   F+ +  ++VVSW  MI+A++ HG   +
Sbjct: 416 G-NALIDMFAKCG------------DVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEE 462

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             RLF ++      PD+ITF+G+L+ CSH+GLV +GR+ F  M   Y  +PR EHY+C+ 
Sbjct: 463 AIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMI 522

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L + G ++EA  V   M P E D    GALL ACR+HG+V +   + ++L+EL PS S
Sbjct: 523 DLLGKVGLLEEAFEVARGM-PMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDS 581

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           G YVL + ++A++ +WD+   +R  M +R VKK    S IEV+GK H  L
Sbjct: 582 GIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFL 631



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 30/271 (11%)

Query: 7   TGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
            G   EA +LF  M      +P+ V+  + ++   +   L     L + + E    R++ 
Sbjct: 222 AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            ++A++D + K G V  AR+VFD +   +VYSWTS+++ Y K   ++   +LF  MP   
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMP--R 339

Query: 120 KNVVSWTTVVLGCAH-----------NGLIA------KLEVISWTTMCTGLERNAMTKLA 162
           +NVVSW+ ++   +              +IA         ++S  + C  L    + +  
Sbjct: 340 RNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWI 399

Query: 163 REYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            E ++ + NK    +   NA+I  +   G++ +AS+LF+ M +RNV +WN MI  +A +G
Sbjct: 400 YENYI-VSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHG 458

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               A++L   +     +P++ T   +L SC
Sbjct: 459 QSEEAIRLFEQLKGENIVPDQITFLGLLASC 489



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 60/391 (15%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLF-----DRMPLKLKN---VVSWTTVVLGCAHNGLIA 139
           N Y   +++ G+ +AR       LF     DR+P   +     V          H G  +
Sbjct: 100 NAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPS 159

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
             E I    +  G             FV    + ++  NA++  Y +  ++  A ++F+ 
Sbjct: 160 GGEAIHCAALKCG-------------FV---GESVLVGNALVHFYANHKSLDDAGKVFDE 203

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCE--GMLE- 255
           MP+R+V +W  ++D YAR G    A +L   M     M PN  T  + +++    G+L  
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263

Query: 256 NMLAHALAIRLGFEQETSLTY-------KCTC----HYVF--------WDWGFQL----- 291
            ++ H      G  +  +L         KC C      VF        + W   +     
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323

Query: 292 --DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D+ SA   F+ +  ++VVSW+ MI AYS      +   LF  M+ +G  P + T V V
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383

Query: 350 LSDCSHAGLVEKGRKTFN--LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           LS C+  G ++ GR  +   ++S   G        + L D+  + G V EA ++  +M  
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLT--VNLGNALIDMFAKCGDVGEASKLFDEMA- 440

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERL 438
            ER+ V    ++ A  +HG    A  + E+L
Sbjct: 441 -ERNVVSWNTMIMAHAVHGQSEEAIRLFEQL 470



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V+ A ++FD M   D  S  SM+  + +  DL  AE LF+ MP  +RN+V+ S 
Sbjct: 290 FGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMP--RRNVVSWSC 347

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           MI  Y +  + +EA  +F E+    V     +  S++S   +   +D GR +++   +  
Sbjct: 348 MIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSN 407

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K  +   TV LG A   + AK         C  +        A + F +M  +++V+WN 
Sbjct: 408 KIGL---TVNLGNALIDMFAK---------CGDVGE------ASKLFDEMAERNVVSWNT 449

Query: 180 MITAYVDAGNMAQASELFNLMPQRNV 205
           MI A+   G   +A  LF  +   N+
Sbjct: 450 MIMAHAVHGQSEEAIRLFEQLKGENI 475


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 242/461 (52%), Gaps = 26/461 (5%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           ++++A +A++  Y  +  + +ARK+FDE+ + +V SWT+LI GY +    DE  R+F RM
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223

Query: 116 PLK---LKNVVSWTTVVLGCAHNGLIA------KLEVISWTTMCTGLERNAMTKL----- 161
            +      N V+           GL+       +  V S   M   LE NA+  +     
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLE-NALVDMFGKCG 282

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               A+E F  MP KD+ +W +M++AY   G++  A++LF  +P RNV +W+ M+  Y+ 
Sbjct: 283 CVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSH 342

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK 277
                 A+++ N M  +   P + T  S+L++C  +    +   L        +  LT  
Sbjct: 343 ANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPN 402

Query: 278 CTCHYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
            +  ++  F   G   DV +A   F  +E K+VVSW  MI+A+  HG   +   LF    
Sbjct: 403 LSNAFIDMFAKCG---DVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFK 459

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            +G  PDE T++GVLS CSH GLV +GR  F  M   YG +PRAEHY+C+ D+L + G +
Sbjct: 460 GNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLL 519

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           +EA  V   MP    D    GALL ACR+HG+V +     ++L  L PS SG YVL + +
Sbjct: 520 QEAFEVARSMPVGA-DEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQI 578

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           +A++ +W +   +R  M +RRVKK    S IEV GK H  L
Sbjct: 579 YASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFL 619



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 47/247 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V  A ++FD M   D  S  SM++ + +  DL  A  LF+ +P   RN+V+ S 
Sbjct: 278 FGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP--NRNVVSWSC 335

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+  Y  A   DEA ++F+++    V               +D                 
Sbjct: 336 MVAAYSHANMPDEAIRIFNDMIAAGV-------------EPID----------------A 366

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +  +V+  CA    +  L+V +W            T +        PN      NA I  
Sbjct: 367 TLVSVLSACAQ---LCSLDVGTWLY---------DTYIVSHKVELTPNLS----NAFIDM 410

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +   G++  AS LF+ M  +NV +WN MI  +  +G    A+ L      +  +P+E T 
Sbjct: 411 FAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATY 470

Query: 244 TSILTSC 250
             +L++C
Sbjct: 471 IGVLSAC 477


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 242/461 (52%), Gaps = 26/461 (5%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           ++++A +A++  Y  +  + +ARK+FDE+ + +V SWT+LI GY +    DE  R+F RM
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223

Query: 116 PLK---LKNVVSWTTVVLGCAHNGLIA------KLEVISWTTMCTGLERNAMTKL----- 161
            +      N V+           GL+       +  V S   M   LE NA+  +     
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLE-NALVDMFGKCG 282

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               A+E F  MP KD+ +W +M++AY   G++  A++LF  +P RNV +W+ M+  Y+ 
Sbjct: 283 CVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSH 342

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK 277
                 A+++ N M  +   P + T  S+L++C  +    +   L        +  LT  
Sbjct: 343 ANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPN 402

Query: 278 CTCHYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
            +  ++  F   G   DV +A   F  +E K+VVSW  MI+A+  HG   +   LF    
Sbjct: 403 LSNAFIDMFAKCG---DVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFK 459

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            +G  PDE T++GVLS CSH GLV +GR  F  M   YG +PRAEHY+C+ D+L + G +
Sbjct: 460 GNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLL 519

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           +EA  V   MP    D    GALL ACR+HG+V +     ++L  L PS SG YVL + +
Sbjct: 520 QEAFEVARSMPVGA-DEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQI 578

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           +A++ +W +   +R  M +RRVKK    S IEV GK H  L
Sbjct: 579 YASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFL 619



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 47/247 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V  A ++FD M   D  S  SM++ + +  DL  A  LF+ +P   RN+V+ S 
Sbjct: 278 FGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP--NRNVVSWSC 335

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+  Y  A   DEA ++F+++    V               +D                 
Sbjct: 336 MVAAYSHANMPDEAIRIFNDMIAAGV-------------EPID----------------A 366

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +  +V+  CA    +  L+V +W            T +        PN      NA I  
Sbjct: 367 TLVSVLSACAQ---LCSLDVGTWLY---------DTYIVSHKVELTPNLS----NAFIDM 410

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +   G++  AS LF+ M  +NV +WN MI  +  +G    A+ L      +  +P+E T 
Sbjct: 411 FAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATY 470

Query: 244 TSILTSC 250
             +L++C
Sbjct: 471 IGVLSAC 477


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/515 (32%), Positives = 281/515 (54%), Gaps = 36/515 (6%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ +A KLFD MS  D VS  SMI   L   +L  A  LF  MPE  +N+++ + M++GY
Sbjct: 58  RLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPE--KNVISWTTMVNGY 115

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           +K GRV+ A+++F +++  +V +W +++ GYF+  +V+EG RLF+ MP  +++V+SWT++
Sbjct: 116 LKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMP--VRDVISWTSM 173

Query: 129 VLGCAHNGLIAKLEVI-----------SWTTMCTGLERNAMTKLAREYFVQMPNKDI--- 174
           + G   NG   +   +           +W+T    L   A   +     VQ+    +   
Sbjct: 174 IGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACA-NAVEFNLGVQVHGHVVKLG 232

Query: 175 -----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                    ++IT Y +   +  A ++FN    +NV  W A++  Y  N     A+++  
Sbjct: 233 CFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFG 292

Query: 230 LMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            M +   +PN++T +  L +C   E + +    H +AI+LG E +  +       Y   +
Sbjct: 293 DMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYT--E 350

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            G   +VNSA   F  +  KD+VSW ++I+  + HG G      F +M++ G  P+EITF
Sbjct: 351 CG---NVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITF 407

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            G+LS CS +G++ KGR  F  +SR      R +HY+C+ DIL R G++ EA  +V  MP
Sbjct: 408 TGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMP 467

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
                 + L ALL ACR+H ++ +A+   + +++L+P+ S AYVL +N++A+ G W + +
Sbjct: 468 VKANSMIWL-ALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVS 526

Query: 467 QVRKKMER--RVKKVASFSQIEVKGKDHTLLAPMR 499
           ++R KM++   VK+  S S + ++GK H  L+  R
Sbjct: 527 RMRVKMKQGGLVKQPGS-SWVVLRGKKHEFLSADR 560



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 181/377 (48%), Gaps = 33/377 (8%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           ++K  R+D+AR +FD+I   N++ +T +I+GY +  ++ +  +LFDRM ++  +VVSW +
Sbjct: 22  HLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR--DVVSWNS 79

Query: 128 VVLGC---AHNGLIAKL-------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++ GC    + G+  +L        VISWTTM  G  +    +LA+  F+ M  KD+ AW
Sbjct: 80  MIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAW 139

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           NAM+  Y + G + +   LF  MP R+V +W +MI     NG    A+ +   M +S   
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLG-----FEQETSLTYKCTCHYVFWDWGF 289
           P  +T   +L++C   +E  L    H   ++LG     F   + +T+   C         
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANC--------- 250

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
            + +  A   F     K+VV WTA++ AY  +       R+F  M K G  P++ TF   
Sbjct: 251 -MKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSIT 309

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C     ++KG K  + M+   G +      + L  +    G V  A+ V   +  +E
Sbjct: 310 LKACCGLEALDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNI--NE 366

Query: 410 RDHVVLGALLGACRLHG 426
           +D V   +++     HG
Sbjct: 367 KDIVSWNSIIVGSAQHG 383



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 21/244 (8%)

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           AH     +   +S+TT      +N     AR  F ++P+ ++  +  MI  Y     +  
Sbjct: 2   AHITRYTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCD 61

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF+ M  R+V +WN+MI      G  G A +L + M +   +   T     L    G
Sbjct: 62  ALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKF--G 119

Query: 253 MLENMLAHALAIRLGFEQETS--LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
            +E      LA RL  +        +    H  F +   +  V   RL FE +  +DV+S
Sbjct: 120 RVE------LAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGV---RL-FEEMPVRDVIS 169

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WT+MI     +G   +   +F +ML+SG +P   TF  VLS C++A  VE     FNL  
Sbjct: 170 WTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANA--VE-----FNLGV 222

Query: 371 RAYG 374
           + +G
Sbjct: 223 QVHG 226


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 160/486 (32%), Positives = 256/486 (52%), Gaps = 42/486 (8%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFDEIYEGNV 89
           +I   +R+ D+  A  +F  M    +N +  ++++ G  K   R+ EA ++FDEI E + 
Sbjct: 67  IIARCVRSGDIDGALRVFHGM--RAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-------- 141
           +S+  ++S Y +    ++ +  FDRMP K  +  SW T++ G A  G + K         
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFK--DAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
               +SW  M +G       + A  +F   P + +VAW AMIT Y+ A  +  A  +F  
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 200 MP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           M   +N+ TWNAMI  Y  N      +KL   M +    PN +  +S L  C  +     
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS---- 298

Query: 259 AHALAIRLGFEQETSLTYKCTCHYV---------FWDWGFQLDVNSARLAFERLEAKDVV 309
               A++LG +    ++    C+ V         +   G   ++  A   FE ++ KDVV
Sbjct: 299 ----ALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCG---ELGDAWKLFEVMKKKDVV 351

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +W AMI  Y+ HG+  +   LF  M+ +  +PD ITFV VL  C+HAGLV  G   F  M
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESM 411

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGD 427
            R Y  +P+ +HY+C+ D+L RAG+++EA++++  MP  PH     V G LLGACR+H +
Sbjct: 412 VRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA---AVFGTLLGACRVHKN 468

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           V +A++  E+L++L   ++  YV  AN++A++  W++ A+VRK+M E  V KV  +S IE
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528

Query: 487 VKGKDH 492
           ++ K H
Sbjct: 529 IRNKVH 534



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 54/292 (18%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA +LFDE+ +PD  S   M++ ++RN +  KA++ F  MP   ++  + + MI GY
Sbjct: 108 RMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP--FKDAASWNTMITGY 165

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            + G +++AR++F  + E N  SW ++ISGY +   +++    F   P  ++ VV+WT +
Sbjct: 166 ARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAP--VRGVVAWTAM 223

Query: 129 VLG-----------CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------PN 171
           + G                +     +++W  M +G   N+  +   + F  M      PN
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283

Query: 172 ---------------------------------KDIVAWNAMITAYVDAGNMAQASELFN 198
                                             D+ A  ++I+ Y   G +  A +LF 
Sbjct: 284 SSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFE 343

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +M +++V  WNAMI  YA++G    A+ L   M  ++  P+  T  ++L +C
Sbjct: 344 VMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLAC 395



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 31/262 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +++A+  F        V+  +MIT +++   +  AEA+F+ M    +N+V  +AMI G
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT-VNKNLVTWNAMISG 258

Query: 68  YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           YV+  R ++  K+F  + E     N    +S + G  +   +  GR        ++  +V
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR--------QIHQIV 310

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           S +T+      N + A   +IS    C  L        A + F  M  KD+VAWNAMI+ 
Sbjct: 311 SKSTLC-----NDVTALTSLISMYCKCGELGD------AWKLFEVMKKKDVVAWNAMISG 359

Query: 184 YVDAGNMAQASELFNLMPQRNV---W-TWNAMIDRYARNGPEGAAMKLLNLM---FQSRF 236
           Y   GN  +A  LF  M    +   W T+ A++      G     M     M   ++   
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419

Query: 237 MPNETTCTSILTSCEGMLENML 258
            P+  TC   L    G LE  L
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEAL 441


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 169/479 (35%), Positives = 243/479 (50%), Gaps = 32/479 (6%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           +  A  LF  MP  +RN    + +I GYV+ G +  AR++ D + E    +W ++ISGY 
Sbjct: 208 MASARKLFDEMP--KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYL 265

Query: 101 KARQVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAHNGL----------IAKLEVIS--- 145
                ++   LF +M L    V   ++T+V+  CA  G           I K E+     
Sbjct: 266 HHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRD 325

Query: 146 -----WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                  T+ T   +      AR+ F +MP KDI+ WN +++ YV+AG M +A   F  M
Sbjct: 326 FLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQM 385

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-M 257
           P++N+ TW  MI   A+NG    A+KL N M    + PN+      +T+C   G LEN  
Sbjct: 386 PEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGR 445

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             HA  + LG +   S+       Y     G    V +AR  F  +   D VSW +MI A
Sbjct: 446 QLHAQIVHLGHDSTLSVGNAMITMYA--RCGI---VEAARTMFLTMPFVDPVSWNSMIAA 500

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
              HGHG +   L+ +MLK G  PD  TF+ VLS CSHAGLVE+G + FN M   YG  P
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAP 560

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
             +HY+ + D+  RAG+  +A  V+  MP   R   +  ALL  CR HG++ +     E+
Sbjct: 561 GEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARA-PIWEALLAGCRTHGNMDLGIEAAEK 619

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           L +L P   G YVL +N++A+ G W++ A+ RK M +R VKK  + S  EV+ K H  L
Sbjct: 620 LFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFL 678



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/491 (23%), Positives = 213/491 (43%), Gaps = 62/491 (12%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A KLFDE+ QPD ++  ++IT +    +L  A  +F   P   R+ V  +AMI GY    
Sbjct: 67  ARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMN 126

Query: 73  RVDEARKVFDEI----YEGNVYSWTSLISG----YFKARQVDEGRRLFDRMPLKLKNVVS 124
               A ++F  +    ++ + +++ S++S     ++  RQ  +              VV 
Sbjct: 127 DGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH----------GTVVK 176

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           +   +     N L   L V         +  +++   AR+ F +MP ++   W  +IT Y
Sbjct: 177 FGIEIFPAVLNAL---LSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGY 233

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           V  G++  A E+ + M ++    WNAMI  Y  +G    A+ L   M       +E+T T
Sbjct: 234 VRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYT 293

Query: 245 SILTSCEG-----MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD------- 292
           S++++C       + + + A+ L   L  +++  L+   T   ++W +G ++D       
Sbjct: 294 SVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYG-KVDGARKIFY 352

Query: 293 -----------------VNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
                            VN+ R+      F ++  K++++WT MI   + +G G Q  +L
Sbjct: 353 EMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKL 412

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F +M   G +P++  F G ++ CS  G +E GR+    +    G        + +  +  
Sbjct: 413 FNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVH-LGHDSTLSVGNAMITMYA 471

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE---LQPSSSG 447
           R G V+ A  +   MP    D V   +++ A   HG    A  + E++++   L    + 
Sbjct: 472 RCGIVEAARTMFLTMP--FVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTF 529

Query: 448 AYVLSANVHAA 458
             VLSA  HA 
Sbjct: 530 LTVLSACSHAG 540



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 25/202 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GKV  A K+F EM   D ++  ++++ ++    + +A++ F  MPE  +N++  + MI G
Sbjct: 342 GKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE--KNLLTWTVMISG 399

Query: 68  YVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
             + G  ++A K+F+++    YE N Y++   I+       ++ GR+L  ++        
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQI-------- 451

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                     H G  + L V     M T   R  + + AR  F+ MP  D V+WN+MI A
Sbjct: 452 ---------VHLGHDSTLSV--GNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAA 500

Query: 184 YVDAGNMAQASELFNLMPQRNV 205
               G+  +A EL+  M +  +
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGI 522


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 254/480 (52%), Gaps = 32/480 (6%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  V    ++ ++++ + L  A+ LF  M E  R++ + + MI GY KAGR+ EARK+FD
Sbjct: 122 PGVVISNRILDMYIKCNSLVNAKRLFDEMAE--RDLCSWNIMISGYAKAGRLQEARKLFD 179

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           ++ E + +SWT++ SGY +  Q +E   LF  M        +  T+    A +  I  L 
Sbjct: 180 QMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLH 239

Query: 143 V---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           +   I    +  GL+                  D V W+A+   Y   G++ +A  +F+ 
Sbjct: 240 LGKEIHGHILRIGLDL-----------------DGVVWSALSDMYGKCGSIGEARHIFDK 282

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
              R+V +W AMIDRY + G       L + + +S   PNE T + +L +C       L 
Sbjct: 283 TVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELG 342

Query: 260 ---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H    R+GF+   S     T  +++   G   ++ +AR  F  +   D+VSWT++I 
Sbjct: 343 KQVHGYMTRIGFD--PSSFAASTLVHMYTKCG---NIKNARRVFNGMPRPDLVSWTSLIS 397

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y+ +G   +  + F  +LKSGT+PD ITFVGVLS C+HAGLV+KG + F+ +   +G  
Sbjct: 398 GYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLT 457

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
             A+HY+CL D+L R+G+++EA  ++ KMP  E D  +  +LLG CR+HG++++A    E
Sbjct: 458 HTADHYACLIDLLSRSGRLQEAEDIIDKMPI-EPDKFLWASLLGGCRIHGNLKLAKRAAE 516

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
            L E++P +   Y   AN++A  G W   A+VRK M+ R V K    S IE+K + H  L
Sbjct: 517 ALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKREVHVFL 576



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 75/352 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +   G+++EA KLFD+M++ D  S  +M + ++R+    +A  LFRAM   +      
Sbjct: 163 SGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNK 222

Query: 57  ---------------------------------NIVAESAMIDGYVKAGRVDEARKVFDE 83
                                            + V  SA+ D Y K G + EAR +FD+
Sbjct: 223 FTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDK 282

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
             + +V SWT++I  YFK  + +EG  LF  + LK     N  +++ V+  CA +     
Sbjct: 283 TVDRDVVSWTAMIDRYFKEGRREEGFALFSDL-LKSGIWPNEFTFSGVLNACADHAA--- 338

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNL 199
                            + K    Y  ++  +    A + ++  Y   GN+  A  +FN 
Sbjct: 339 ---------------EELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNG 383

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           MP+ ++ +W ++I  YA+NG    A++   L+ +S   P+  T   +L++C         
Sbjct: 384 MPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSAC--------T 435

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV--NSARLAFERLEAKDVV 309
           HA  +  G E   S+  K    +    +   +D+   S RL     EA+D++
Sbjct: 436 HAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQ----EAEDII 483



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 115/293 (39%), Gaps = 66/293 (22%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------ 54
           +  +G  G + EA  +FD+    D VS  +MI  + +     +  ALF  + +S      
Sbjct: 264 SDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNE 323

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                            +  A S ++  Y K G +  AR+VF+ 
Sbjct: 324 FTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNG 383

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLI 138
           +   ++ SWTSLISGY +  Q DE  + F+   L LK     + +++  V+  C H GL+
Sbjct: 384 MPRPDLVSWTSLISGYAQNGQPDEALQFFE---LLLKSGTQPDHITFVGVLSACTHAGLV 440

Query: 139 AK-LEVIS--------------WTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
            K LE                 +  +   L R+   + A +   +MP   D   W +++ 
Sbjct: 441 DKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLG 500

Query: 183 AYVDAGNMA----QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                GN+      A  LF + P+ N  T+  + + YA  G  G   ++  +M
Sbjct: 501 GCRIHGNLKLAKRAAEALFEIEPE-NPATYTTLANIYATAGLWGGVAEVRKVM 552


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 261/492 (53%), Gaps = 34/492 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           ++I ++ R   +  A  +F  +P+ +R +   +AM+ GY K     +A+ +FD + E NV
Sbjct: 135 AVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV 194

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-------- 141
            +WT++++GY K + ++  RR FD MP +  +VVSW  ++ G A NGL  +         
Sbjct: 195 ITWTAMVTGYAKVKDLEAARRYFDCMPER--SVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 142 ------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI----VAWNAMITAYVDAGNMA 191
                 +  +W T+ +         LA      +  K I        A++  Y   G++ 
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSC 250
            A +LFN MP RNV TWN+MI  YA+NG    A++L   M  ++   P+E T  S++++C
Sbjct: 313 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
            G L  +      +R   E +  L+       +F  +     +  A+  F+ +  +DVVS
Sbjct: 373 -GHLGALELGNWVVRFLTENQIKLSISGHNAMIFM-YSRCGSMEDAKRVFQEMATRDVVS 430

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           +  +I  ++ HGHG +   L + M + G +PD +TF+GVL+ CSHAGL+E+GRK F  + 
Sbjct: 431 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 490

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDV 428
                 P  +HY+C+ D+L R G++++A R + +MP  PH     V G+LL A R+H  V
Sbjct: 491 -----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG---VYGSLLNASRIHKQV 542

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEV 487
            + +    +L EL+P +SG ++L +N++A+ G W +  ++R+ M++  VKK   +S +E 
Sbjct: 543 ELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEY 602

Query: 488 KGKDHTLLAPMR 499
            GK H  +   R
Sbjct: 603 GGKLHKFIVADR 614



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 126/265 (47%), Gaps = 28/265 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--Q 55
           S +   G  +EA +LFDEM     +PD  +  ++I+      D   A +L R + +   Q
Sbjct: 233 SGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQ 292

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N    +A++D Y K G +D ARK+F+ +   NV +W S+I+GY +  Q      LF  M
Sbjct: 293 LNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 352

Query: 116 PLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
               K   + V+  +V+  C H G    LE+ +W           + +   E  +++   
Sbjct: 353 ITAKKLTPDEVTMVSVISACGHLG---ALELGNW-----------VVRFLTENQIKL--- 395

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            I   NAMI  Y   G+M  A  +F  M  R+V ++N +I  +A +G    A+ L++ M 
Sbjct: 396 SISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK 455

Query: 233 QSRFMPNETTCTSILTSCE--GMLE 255
           +    P+  T   +LT+C   G+LE
Sbjct: 456 EGGIEPDRVTFIGVLTACSHAGLLE 480


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 181/606 (29%), Positives = 294/606 (48%), Gaps = 110/606 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G +++A K+FD M Q +  S  +++    +   L +A  LF+ MPE  R+  + +A
Sbjct: 64  YGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPE--RDQCSWNA 121

Query: 64  MIDGYVKAGRVDEARK----------VFDEI----------------------------- 84
           M+ G+ +  R +EA +          V +E                              
Sbjct: 122 MVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSR 181

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV 143
           Y  +VY  ++L+  Y K R V   +R FD M   ++N+VSW +++     NG   K LEV
Sbjct: 182 YSLDVYMGSALVDMYSKCRVVASAQRAFDDM--DVRNIVSWNSLITCYEQNGPAGKALEV 239

Query: 144 I----------------SWTTMCTGLER------------------------NAMTKL-- 161
                            S  + C  L                          NA+  +  
Sbjct: 240 FVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYA 299

Query: 162 -------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                  AR  F +MP +D+V+  +M++ Y  A ++  A  +F+ M +RNV +WNA+I  
Sbjct: 300 KCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAG 359

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGF--- 268
           Y +NG    A++L  L+ +    P   T  ++L +C  + +  L   AH   ++ GF   
Sbjct: 360 YTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFK 419

Query: 269 -EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
             +++ +    +   ++   G    V   RL FER+  +D VSW AMI+ Y+ +G+G + 
Sbjct: 420 SGEDSDIFVGNSLIDMYMKCGL---VEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEA 476

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F  ML SG +PD +T +GVLS CSHAGLVE+GR  F  M+  +G  P  +HY+C+ D
Sbjct: 477 LEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVD 536

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG + EA  ++  M P E D VV G+LL AC++HG++ +  Y+ ERL+E+ P +SG
Sbjct: 537 LLGRAGCLDEANNLIQTM-PMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSG 595

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREM 501
            YVL +N++A  G W +  +VRK+M +  V K    S I ++   H  +      P ++ 
Sbjct: 596 PYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKD 655

Query: 502 GYVVLK 507
            Y++LK
Sbjct: 656 IYLILK 661



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 201/461 (43%), Gaps = 61/461 (13%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAG 72
           K+  ++S  D    A ++   +++  + +A  +   + ++Q    I  ++ ++D Y K G
Sbjct: 9   KVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCG 68

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            +++ARKVFD + + N +SW +++    K   +DE   LF  MP   ++  SW  +V G 
Sbjct: 69  FLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMP--ERDQCSWNAMVSGF 126

Query: 133 AH-----------------NGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDI 174
           A                  + ++ +    S  + C GL + +   ++         + D+
Sbjct: 127 AQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDV 186

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              +A++  Y     +A A   F+ M  RN+ +WN++I  Y +NGP G A+++   M   
Sbjct: 187 YMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIR---------LGFEQETSLTYKC---- 278
              P+E T  S+ ++C     + E +  HA  ++         LG      +  KC    
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLG-NALVDMYAKCRRVN 305

Query: 279 TCHYVF---------------WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
               VF                 +     V +ARL F  +  ++VVSW A+I  Y+ +G 
Sbjct: 306 EARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGE 365

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHY 382
             +  RLF  + +    P   TF  +L+ C++   ++ GR+   +++   + FK   +  
Sbjct: 366 NEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSD 425

Query: 383 ----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
               + L D+  + G V++   V  +M   ERD+V   A++
Sbjct: 426 IFVGNSLIDMYMKCGLVEDGRLVFERML--ERDNVSWNAMI 464


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 249/468 (53%), Gaps = 32/468 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q N+   +A++  Y+  G++D AR VFD   + +V +W  +IS Y K  + +E RRLF  
Sbjct: 150 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 209

Query: 115 MPLK--LKNVVSWTTVVLGCAH-NGLIAKLEVISWTTMC----TGLERNAMTKL------ 161
           M  K  L   V+   V+  C+    L    +V S+   C      +  NAM  +      
Sbjct: 210 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 269

Query: 162 ---AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              A   F  M N+DI++W  +++ + + G +  A   F+ MP+++  +W AMID Y R+
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETS 273
                A++L   M  +   P+E T  S+LT+C        AH  A+ LG     +     
Sbjct: 330 NRFKEALELFRNMQATNVKPDEFTMVSVLTAC--------AHLGALELGEWIRTYIDRNK 381

Query: 274 LTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           +           D  F+  DV+ A   F  +  +D  +WTAMI+  + +GHG +   +F+
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            MLK+   PDEIT++GVLS C+H GLV+KGRK F  M+  +G +P   HY CL D+L RA
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 501

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++KEA  V+  MP  + + +V GALL  CR++ +  MA+ + ++++EL+P +   YVL 
Sbjct: 502 GRLKEAYEVIENMPI-KANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLL 560

Query: 453 ANVHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKGKDHTLLAPMR 499
            N++AA   W++  ++R+  M++ +KK    S IE+ G+ H  +A  R
Sbjct: 561 CNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDR 608



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 25/225 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +MI ++    ++  A  +FR+M  + R+I++ + ++ G+   G +D AR  FD++ E + 
Sbjct: 259 AMIDMYADCGEMDSALGIFRSM--NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVIS 145
            SWT++I GY ++ +  E   LF  M  +  NV     +  +V+  CAH G    LE+  
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNM--QATNVKPDEFTMVSVLTACAHLG---ALELGE 371

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W    T ++RN   K+  + FV+         NA+I  Y   G++ +A  +F  M QR+ 
Sbjct: 372 WIR--TYIDRN---KIKNDLFVR---------NALIDMYFKCGDVDKAESIFREMSQRDK 417

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +TW AMI   A NG    A+ + + M ++  +P+E T   +L++C
Sbjct: 418 FTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 462



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 68/258 (26%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------ 54
            S F   G++  A   FD+M + D VS  +MI  ++R++   +A  LFR M  +      
Sbjct: 292 VSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 351

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + ++   +A+ID Y K G VD+A  +F E
Sbjct: 352 FTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE 411

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
           + + + ++WT++I G       ++   +F  M LK   L + +++  V+  C H GL+ K
Sbjct: 412 MSQRDKFTWTAMIVGLAVNGHGEKALDMFSNM-LKASILPDEITYIGVLSACTHTGLVDK 470

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASE 195
                                 R+YF++M ++     +I  +  ++     AG + +A E
Sbjct: 471 ---------------------GRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 509

Query: 196 LFNLMPQR-NVWTWNAMI 212
           +   MP + N   W A++
Sbjct: 510 VIENMPIKANSIVWGALL 527



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 34/194 (17%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+   A  LF+ +P+ N++ WN MI  Y+R       + L   M +    P+  T   + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV-------------- 293
                              GF ++ +L Y    H      G Q +V              
Sbjct: 126 K------------------GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCG 167

Query: 294 --NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
             ++AR  F+     DV++W  +I AY+  G   +  RLF  M      P  +T V VLS
Sbjct: 168 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLS 227

Query: 352 DCSHAGLVEKGRKT 365
            CS    +  G+K 
Sbjct: 228 ACSKLKDLRTGKKV 241



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-----QETSLTYKCTCHYVFWDWGFQ 290
           F P      S+L +CE M +    H  AI+ G       Q   +T+ CT  Y        
Sbjct: 14  FSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG------- 66

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            D   AR  F+ +   ++  W  MI  YS          L+  ML+ G KPD  TF  + 
Sbjct: 67  -DFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              +    +E GR+    + + +G +     ++ L  +    GQ+  A  V    P
Sbjct: 126 KGFTRDIALEYGRQLHGHVLK-HGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 180


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 273/523 (52%), Gaps = 45/523 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + EA +LFDEM Q +  S  +M+T F     + KA  +F AMP   ++  + S M+ G
Sbjct: 146 GLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP--AKDSASLSTMVSG 203

Query: 68  YVKAGRVDEARKVFDE-----IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------ 116
           + K G + EA ++  +       +  V ++ +LI  Y +A +  + +RLFD +P      
Sbjct: 204 FTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQH 263

Query: 117 --LKLK----NVVSWTTVVLG-------CAHNGLIAKL---EVISWTTMCTGLERNAMTK 160
             LK K    NVVSW ++++        C+   L  ++   +++SW TM +G  + +  K
Sbjct: 264 NMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMK 323

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            + + F +MP+ D V+WN +I  ++  G    A   F+ MP+R   +WN MI  Y +NG 
Sbjct: 324 ESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGN 383

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA-----HALAIRLGFEQETSLT 275
             +++KL + M +   +P+  T +S+L +C  +   ML      H L +   F  +T+++
Sbjct: 384 YISSVKLFSKMLEVGEIPDRHTFSSVLAACASI--PMLGLGAQIHQL-VEKSFVPDTAIS 440

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARM 334
                 Y          +N A   F+++  K D+VSW A+I  Y +HG   +  +LF  M
Sbjct: 441 NALITMYSRCG-----ALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEM 495

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            ++   P  ITFV +LS C +AGLV +GR  F+ M   YG   R EHY+ L +++ R GQ
Sbjct: 496 RRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQ 555

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           + +A+ V++ M P   D  V GA LGAC    +  +A    + L  + P SS  YVL  N
Sbjct: 556 LDDALEVINSM-PMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHN 614

Query: 455 VHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +HA  G+W   A VR++MER+ + K   +S I+++GK H  ++
Sbjct: 615 LHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFIS 657



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 207/451 (45%), Gaps = 49/451 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+   A +LFD +     V+  S++    R  D   A   F AMP   R+ V+ + ++  
Sbjct: 50  GRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMP--VRDAVSWNTLLAA 107

Query: 68  YVKAGRVDE---ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           Y  +   D    AR++FDE+ + +V +W +L+  Y +   +DE RRLFD MP   +N  S
Sbjct: 108 YSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP--QRNAAS 165

Query: 125 WTTVVLGCAHNGLIAK-LEVI---------SWTTMCTGLERNAMTKLAREYF-----VQM 169
           W T+V G    G + K L+V          S +TM +G  +N M   A E       V  
Sbjct: 166 WNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTD 225

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMP--------------QRNVWTWNAMIDRY 215
            +K + A+N +I AY  AG  + A  LF+++P              +RNV +WN+M+  Y
Sbjct: 226 MDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICY 285

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
            + G   +A  L N M   + + +  T  S  T    M E+        +L +E     T
Sbjct: 286 IKAGDVCSARALFNEM-PDKDLVSWNTMISGYTQASDMKESE-------KLFWEMPDPDT 337

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
              + + +   +  + +   AR  F+R+  +  +SW  MI  Y  +G+     +LF++ML
Sbjct: 338 --VSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKML 395

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G  PD  TF  VL+ C+   ++  G +   L+ ++  F P     + L  +  R G +
Sbjct: 396 EVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS--FVPDTAISNALITMYSRCGAL 453

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +A  +  +M   ++D V   AL+G    HG
Sbjct: 454 NDAEAIFKQMHT-KKDLVSWNALIGCYEHHG 483



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 40/329 (12%)

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           ++AGR   AR++FD +   +V +W SL++G  +       R  FD MP++  + VSW T+
Sbjct: 47  LRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVR--DAVSWNTL 104

Query: 129 VLG---CAHNGLIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           +       H   +A          + +V++W T+     R  +   AR  F +MP ++  
Sbjct: 105 LAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAA 164

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +WN M+T +  AG + +A ++F+ MP ++  + + M+  + +NG    A +LL       
Sbjct: 165 SWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVT 224

Query: 236 FMPNETTCTSILTSCEGM---------LENMLA-----HALAIRLGFEQE-TSLTYKCTC 280
            M       + L    G          L +M+      H +  R GFE+   S      C
Sbjct: 225 DMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMIC 284

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           +          DV SAR  F  +  KD+VSW  MI  Y+      +  +LF  M      
Sbjct: 285 YIK------AGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEM----PD 334

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           PD +++  ++      G  E  R  F+ M
Sbjct: 335 PDTVSWNLIIQGFMQKGEAEHARGFFDRM 363


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 271/532 (50%), Gaps = 68/532 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNH-------------------DLPKAEALFR 49
           KV+ A KLFDE++  D +S  SMI+ +++N                    DL     +F 
Sbjct: 301 KVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFV 360

Query: 50  AMPES-------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           A                        R +   + ++D Y K G ++ A +VF+ + E  V 
Sbjct: 361 ACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVV 420

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWTS+I+GY +    D   +LFD M  +  + +V + T+++  CA NG +   +++    
Sbjct: 421 SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI 480

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
               LE N+        FV          NA+   Y   G+M  A ++F+ M +++V +W
Sbjct: 481 RENNLETNS--------FVS---------NALTDMYAKCGSMKDAHDVFSHMKKKDVISW 523

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR 265
           N MI  Y +N     A+ L   M Q    P+ TT   IL +C  +    +    H  A+R
Sbjct: 524 NTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACILPACASLAALDKGREIHGYALR 582

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G+ ++  +T      YV    G  +    AR  F+ +  KD+VSWT MI  Y  HG+G 
Sbjct: 583 NGYSEDKYVTNAVVDMYV--KCGLLV---LARSLFDMIPNKDLVSWTVMIAGYGMHGYGS 637

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +    F +M  +G +PDE++F+ +L  CSH+GL+++G K FN+M +    +P  EHY+C+
Sbjct: 638 EAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACM 697

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L R G + +A + +  MP  + D  + GALL  CR+H DV++A+ + ER+ EL+P +
Sbjct: 698 VDLLARTGNLVKAHKFIKAMPI-KPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPEN 756

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +G YVL AN++A   +W+E  ++RKK+ +R +KK    S IE+KGK +  +A
Sbjct: 757 TGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVA 808



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 197/447 (44%), Gaps = 39/447 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           G +KE   +FD++S+        MI+ +  + +  ++  LF+ M E   + N    S+++
Sbjct: 199 GDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSW----TSLISGYFKARQVDEGRRLFDRMPLKLKN 121
             +    RV+E R+V   I +    S+     SLIS YF  R+V   ++LFD   L  ++
Sbjct: 259 KCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDE--LTDRD 316

Query: 122 VVSWTTVVLGCAHNGLIAK-LEV----------ISWTTM------CTGLERNAMTKLARE 164
           V+SW +++ G   NGL  + +E+          I   TM      C  +    + K+   
Sbjct: 317 VISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHS 376

Query: 165 YFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           Y ++    ++++   N ++  Y   G++  A  +F  M ++ V +W +MI  Y R G   
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN-MLAHALAIRLGFEQETSLTYKCT 279
            A+KL + M     +P+    TSIL +C   G L++  + H        E  + ++   T
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALT 496

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          +  A   F  ++ KDV+SW  MI  Y+ +    +   LFA M +  +
Sbjct: 497 DMYAKCG-----SMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRE-S 550

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           KPD  T   +L  C+    ++KGR+      R  G+       + + D+  + G +  A 
Sbjct: 551 KPDGTTVACILPACASLAALDKGREIHGYALRN-GYSEDKYVTNAVVDMYVKCGLLVLAR 609

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHG 426
            +   +P   +D V    ++    +HG
Sbjct: 610 SLFDMIP--NKDLVSWTVMIAGYGMHG 634



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 169/392 (43%), Gaps = 61/392 (15%)

Query: 56  RNIVAESA-MIDG---------YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV 105
           R+I+  S  MIDG         YVK G + E R VFD++ E  ++ W  +IS Y  +   
Sbjct: 173 RSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNY 232

Query: 106 DEGRRLFDRM-PLKLKNVVSWTTVVLGC-----------AHNGLIAKLEVISWTTMCTGL 153
            E   LF +M  L +K      + +L C             +GLI KL   S+ T+   L
Sbjct: 233 GESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSL 292

Query: 154 ER----NAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                     + A++ F ++ ++D+++WN+MI+ YV  G   +  E+F  M       + 
Sbjct: 293 ISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKM-----LVFG 347

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
             ID             ++N+            C +I T    +L   + H+ +I+    
Sbjct: 348 VDID----------LATMVNVF---------VACANIGT----LLLGKVLHSYSIKAA-T 383

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
            +  + +  T   ++   G   D+NSA   FER++ K VVSWT+MI  Y   G      +
Sbjct: 384 LDREVRFNNTLLDMYSKCG---DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIK 440

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF  M   G  PD      +L+ C+  G ++ G+   + + R    +  +   + L D+ 
Sbjct: 441 LFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI-RENNLETNSFVSNALTDMY 499

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            + G +K+A  V S M   ++D +    ++G 
Sbjct: 500 AKCGSMKDAHDVFSHMK--KKDVISWNTMIGG 529



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 46/333 (13%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  YV  G++ +   +F+ + +  ++ WN MI  Y+ +G  G ++ L   M +    PN
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 240 ETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T +SIL     +    E    H L  +LGF      +Y    + +   +     V  A
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFN-----SYNTVVNSLISFYFVGRKVRCA 305

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +  F+ L  +DV+SW +MI  Y  +G   +   +F +ML  G   D  T V V   C++ 
Sbjct: 306 QKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI 365

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP--------- 407
           G +  G+   +   +A          + L D+  + G +  A+RV  +M           
Sbjct: 366 GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSM 425

Query: 408 ---HERDHVVLGA---------------------LLGACRLHGDVR----MADYIGERLI 439
              + R+ +  GA                     +L AC ++G+++    + DYI E  +
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485

Query: 440 ELQPSSSGAYV-LSANVHAARGEWDEFAQVRKK 471
           E     S A   + A   + +   D F+ ++KK
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 31/263 (11%)

Query: 7   TGKVKE-----ATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--Q 55
           TG V+E     A KLFDEM      PD  +  S++     N +L   + +   + E+  +
Sbjct: 427 TGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLE 486

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N    +A+ D Y K G + +A  VF  + + +V SW ++I GY K    +E   LF  M
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM 546

Query: 116 PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
             + K +  +   ++  CA    + K   I    +     RN  +            +D 
Sbjct: 547 QRESKPDGTTVACILPACASLAALDKGREIHGYAL-----RNGYS------------EDK 589

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA++  YV  G +  A  LF+++P +++ +W  MI  Y  +G    A+   N M  +
Sbjct: 590 YVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMT 649

Query: 235 RFMPNETTCTSILTSC--EGMLE 255
              P+E +  SIL +C   G+L+
Sbjct: 650 GIEPDEVSFISILYACSHSGLLD 672


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 249/468 (53%), Gaps = 32/468 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q N+   +A++  Y+  G++D AR VFD   + +V +W  +IS Y K  + +E RRLF  
Sbjct: 171 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 230

Query: 115 MPLK--LKNVVSWTTVVLGCAH-NGLIAKLEVISWTTMC----TGLERNAMTKL------ 161
           M  K  L   V+   V+  C+    L    +V S+   C      +  NAM  +      
Sbjct: 231 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 290

Query: 162 ---AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              A   F  M N+DI++W  +++ + + G +  A   F+ MP+++  +W AMID Y R+
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETS 273
                A++L   M  +   P+E T  S+LT+C        AH  A+ LG     +     
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMVSVLTAC--------AHLGALELGEWIRTYIDRNK 402

Query: 274 LTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           +           D  F+  DV+ A   F  +  +D  +WTAMI+  + +GHG +   +F+
Sbjct: 403 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 462

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            MLK+   PDEIT++GVLS C+H GLV+KGRK F  M+  +G +P   HY CL D+L RA
Sbjct: 463 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 522

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++KEA  V+  MP  + + +V GALL  CR++ +  MA+ + ++++EL+P +   YVL 
Sbjct: 523 GRLKEAYEVIENMPI-KANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLL 581

Query: 453 ANVHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKGKDHTLLAPMR 499
            N++AA   W++  ++R+  M++ +KK    S IE+ G+ H  +A  R
Sbjct: 582 CNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDR 629



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 25/225 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +MI ++    ++  A  +FR+M  + R+I++ + ++ G+   G +D AR  FD++ E + 
Sbjct: 280 AMIDMYADCGEMDSALGIFRSM--NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVIS 145
            SWT++I GY ++ +  E   LF  M  +  NV     +  +V+  CAH G    LE+  
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNM--QATNVKPDEFTMVSVLTACAHLG---ALELGE 392

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W    T ++RN   K+  + FV+         NA+I  Y   G++ +A  +F  M QR+ 
Sbjct: 393 WIR--TYIDRN---KIKNDLFVR---------NALIDMYFKCGDVDKAESIFREMSQRDK 438

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +TW AMI   A NG    A+ + + M ++  +P+E T   +L++C
Sbjct: 439 FTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 483



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 68/258 (26%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------ 54
            S F   G++  A   FD+M + D VS  +MI  ++R++   +A  LFR M  +      
Sbjct: 313 VSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 372

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + ++   +A+ID Y K G VD+A  +F E
Sbjct: 373 FTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE 432

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
           + + + ++WT++I G       ++   +F  M LK   L + +++  V+  C H GL+ K
Sbjct: 433 MSQRDKFTWTAMIVGLAVNGHGEKALDMFSNM-LKASILPDEITYIGVLSACTHTGLVDK 491

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASE 195
                                 R+YF++M ++     +I  +  ++     AG + +A E
Sbjct: 492 ---------------------GRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 530

Query: 196 LFNLMPQR-NVWTWNAMI 212
           +   MP + N   W A++
Sbjct: 531 VIENMPIKANSIVWGALL 548



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 34/194 (17%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+   A  LF+ +P+ N++ WN MI  Y+R       + L   M +    P+  T   + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV-------------- 293
                              GF ++ +L Y    H      G Q +V              
Sbjct: 147 K------------------GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCG 188

Query: 294 --NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
             ++AR  F+     DV++W  +I AY+  G   +  RLF  M      P  +T V VLS
Sbjct: 189 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLS 248

Query: 352 DCSHAGLVEKGRKT 365
            CS    +  G+K 
Sbjct: 249 ACSKLKDLRTGKKV 262



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-----QETSLTYKCTCHYVFWDWGFQ 290
           F P      S+L +CE M +    H  AI+ G       Q   +T+ CT  Y        
Sbjct: 35  FSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG------- 87

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            D   AR  F+ +   ++  W  MI  YS          L+  ML+ G KPD  TF  + 
Sbjct: 88  -DFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              +    +E GR+    + + +G +     ++ L  +    GQ+  A  V    P
Sbjct: 147 KGFTRDIALEYGRQLHGHVLK-HGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 201


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 272/521 (52%), Gaps = 41/521 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + EA +LFDEM Q +  S  +M+T F     + KA  +F AMP   ++  + S M+ G
Sbjct: 110 GLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP--AKDSASLSTMVSG 167

Query: 68  YVKAGRVDEARKVFDE-----IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------ 116
           + K G + EA ++  +       +  V ++ +LI  Y +A +  + +RLFD +P      
Sbjct: 168 FTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQH 227

Query: 117 --LKLK----NVVSWTTVVLG-------CAHNGLIAKL---EVISWTTMCTGLERNAMTK 160
             LK K    NVVSW ++++        C+   L  ++   +++SW TM +G  + +  K
Sbjct: 228 NMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMK 287

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            + + F +MP+ D V+WN +I  ++  G    A   F+ MP+R   +WN MI  Y +NG 
Sbjct: 288 ESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGN 347

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
             +++KL + M +   +P+  T +S+L +C  +    L    H L +   F  +T+++  
Sbjct: 348 YISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQL-VEKSFVPDTAISNA 406

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
               Y          +N A   F+++  K D+VSW A+I  Y +HG   +  +LF  M +
Sbjct: 407 LITMYSRCG-----ALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRR 461

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +   P  ITFV +LS C +AGLV +GR  F+ M   YG   R EHY+ L +++ R GQ+ 
Sbjct: 462 AKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLD 521

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           +A+ V++ M P   D  V GA LGAC    +  +A    + L  + P SS  YVL  N+H
Sbjct: 522 DALEVINSM-PMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLH 580

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           A  G+W   A VR++MER+ + K   +S I+++GK H  ++
Sbjct: 581 AHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFIS 621



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 207/451 (45%), Gaps = 49/451 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+   A +LFD +     V+  S++    R  D   A   F AMP   R+ V+ + ++  
Sbjct: 14  GRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMP--VRDAVSWNTLLAA 71

Query: 68  YVKAGRVDE---ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           Y  +   D    AR++FDE+ + +V +W +L+  Y +   +DE RRLFD MP   +N  S
Sbjct: 72  YSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP--QRNAAS 129

Query: 125 WTTVVLGCAHNGLIAK-LEVI---------SWTTMCTGLERNAMTKLAREYF-----VQM 169
           W T+V G    G + K L+V          S +TM +G  +N M   A E       V  
Sbjct: 130 WNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTD 189

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMP--------------QRNVWTWNAMIDRY 215
            +K + A+N +I AY  AG  + A  LF+++P              +RNV +WN+M+  Y
Sbjct: 190 MDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICY 249

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
            + G   +A  L N M   + + +  T  S  T    M E+        +L +E     T
Sbjct: 250 IKAGDVCSARALFNEM-PDKDLVSWNTMISGYTQASDMKESE-------KLFWEMPDPDT 301

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
              + + +   +  + +   AR  F+R+  +  +SW  MI  Y  +G+     +LF++ML
Sbjct: 302 --VSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKML 359

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G  PD  TF  VL+ C+   ++  G +   L+ ++  F P     + L  +  R G +
Sbjct: 360 EVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS--FVPDTAISNALITMYSRCGAL 417

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +A  +  +M   ++D V   AL+G    HG
Sbjct: 418 NDAEAIFKQMHT-KKDLVSWNALIGCYEHHG 447



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 40/329 (12%)

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           ++AGR   AR++FD +   +V +W SL++G  +       R  FD MP++  + VSW T+
Sbjct: 11  LRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVR--DAVSWNTL 68

Query: 129 VLGCA---HNGLIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           +   +   H   +A          + +V++W T+     R  +   AR  F +MP ++  
Sbjct: 69  LAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAA 128

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +WN M+T +  AG + +A ++F+ MP ++  + + M+  + +NG    A +LL       
Sbjct: 129 SWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVT 188

Query: 236 FMPNETTCTSILTSCEGM---------LENMLA-----HALAIRLGFEQE-TSLTYKCTC 280
            M       + L    G          L +M+      H +  R GFE+   S      C
Sbjct: 189 DMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMIC 248

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           +          DV SAR  F  +  KD+VSW  MI  Y+      +  +LF  M      
Sbjct: 249 YIK------AGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEM----PD 298

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           PD +++  ++      G  E  R  F+ M
Sbjct: 299 PDTVSWNLIIQGFMQKGEAEHARGFFDRM 327


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 254/490 (51%), Gaps = 44/490 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           SA++D Y K  R ++AR+VFD + E NV SW SLI+ Y +   V E   LF  M      
Sbjct: 190 SALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFS 249

Query: 120 KNVVSWTTVVLGCAHNGLIAKLE---VISWTTMCTGLE-----RNAMTKL---------A 162
            + V+ ++V+  CA  GL A  E   V +    C  L       NA+  +         A
Sbjct: 250 PDEVTLSSVMSACA--GLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           R  F  MP++ IV+  +++T Y  + N+  A  +F+ M ++NV  WN +I  YA+NG E 
Sbjct: 308 RCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCT 279
            A++L   + +    P   T  ++L +C  + +  L   AH   ++ GF  +        
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 280 CHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 D   +   ++     FER+ A+D VSW AMI+ Y+ +G       LF RML S 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             PD +T +GVLS C H+GLV++GR+ F+ M+  +G  P  +HY+C+ D+L RAG +KEA
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 547

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             +++ M P E D V+  +LLGACRLH +V + ++   RL EL P +SG YVL +N++A 
Sbjct: 548 EELINDM-PMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAE 606

Query: 459 RGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR------------E 500
            G+W E  +VR+ M +R V K    S IE+  K +  LA     P R            E
Sbjct: 607 MGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQME 666

Query: 501 MGYVVLKEVD 510
           MG   + E+D
Sbjct: 667 MGRTSIDEID 676



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 209/455 (45%), Gaps = 62/455 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y + GR+ +AR+VFDEI   N +S+ +L+S Y +  + DE R LF+ +P    +
Sbjct: 56  NTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIP--DPD 113

Query: 122 VVSWTTVVLGCAHNG---------LIAKLE----VISWTTMCTGLERNAMTKLARE---- 164
             S+  VV   A +G          +A +     V++  +  + L   A  K +R     
Sbjct: 114 QCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQV 173

Query: 165 --YFVQMPNKDIVAW-NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                + P+ D V   +A++  Y        A  +F+ MP+RNV +WN++I  Y +NGP 
Sbjct: 174 HGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPV 233

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR------------- 265
           G A+ L   M  + F P+E T +S++++C G+    E    HA  ++             
Sbjct: 234 GEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNA 293

Query: 266 -LGFEQETSLTYKCTCHY-------------VFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            +    +   T++  C +             +   +    +V  A++ F ++  K+V++W
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAW 353

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             +I AY+ +G   +  RLF ++ +    P   T+  VL+ C +   ++ G++    + +
Sbjct: 354 NVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLK 413

Query: 372 A---YGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               + F P ++ +  + L D+  + G + +  +V  +M    RD+V   A++     +G
Sbjct: 414 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA--RDNVSWNAMIVGYAQNG 471

Query: 427 DVRMADYIGERLI---ELQPSSSGAYVLSANVHAA 458
             + A ++ ER++   E   S +   VLSA  H+ 
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSG 506



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 33/275 (12%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITV---FLRNHDLPKAEALFRAMPESQRNIV 59
            G V EA  LF EM      PD V+ +S+++       + +  +  A        + ++V
Sbjct: 230 NGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMV 289

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             +A++D Y K GR  EAR +FD +   ++ S TS+++GY K+  V++ + +F +M    
Sbjct: 290 LNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQM--VE 347

Query: 120 KNVVSWTTVVLGCAHNG-------LIAKLEVIS-WTTMCT-GLERNAMTKLAREYFVQM- 169
           KNV++W  ++   A NG       L  +L+  S W T  T G   NA   +A     Q  
Sbjct: 348 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQA 407

Query: 170 --------------PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                         P  D+   N+++  Y+  G++   +++F  M  R+  +WNAMI  Y
Sbjct: 408 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 467

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+NG    A+ L   M  S   P+  T   +L++C
Sbjct: 468 AQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC 502



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 10/270 (3%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E     T+ +   R    + AR  F ++P ++  ++NA+++AY   G   +A  LF  +P
Sbjct: 51  ETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIP 110

Query: 202 QRNVWTWNAMIDRYARNGPEGA--AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
             +  ++NA++   AR+G   A  A++ L  M    F+ N  +  S L++C    ++   
Sbjct: 111 DPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTG 170

Query: 260 ---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H L  R     +  +       Y   +         AR  F+ +  ++VVSW ++I 
Sbjct: 171 EQVHGLVARSPHADDVHIRSALVDMYAKCE-----RPEDARRVFDAMPERNVVSWNSLIT 225

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y  +G   +   LF  M+ +G  PDE+T   V+S C+      +GR+    M +    +
Sbjct: 226 CYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLR 285

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
                 + L D+  + G+  EA  +   MP
Sbjct: 286 DDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 15/151 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG + +  K+F+ M+  D VS  +MI  + +N     A  LF  M  S  N   +S  + 
Sbjct: 439 TGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN--PDSVTMI 496

Query: 67  GYVKA----GRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPL 117
           G + A    G VDE R+ F  + E +  +     +T ++    +A  + E   L + MP+
Sbjct: 497 GVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPM 556

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +  +V+ W +++  C    L   +E+  WT 
Sbjct: 557 EPDSVL-WASLLGACR---LHKNVELGEWTA 583


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 47/468 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
           SA++D Y K G V++A++VFDE+ + NV SW SLI+ Y +     E  ++F  M      
Sbjct: 191 SALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVE 250

Query: 116 --PLKLKNVVS----WTTVVLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLARE 164
              + L +V+S     + + +G   +  + K++     +I          + +  K AR 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F  MP ++++A  +M++ Y  A +   A  +F  M +RNV +WNA+I  Y +NG    A
Sbjct: 311 IFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET--------- 272
           + L  L+ +    P   T  +IL +C  + +    M AH   ++ GF+ ++         
Sbjct: 371 LSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430

Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                +  KC C            V    L F ++  +D VSW AMI+ ++ +G+G +  
Sbjct: 431 NSLIDMYVKCGC------------VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  ML SG KPD IT +GVLS C HAG VE+GR  F+ M+R +G  P  +HY+C+ D+
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG ++EA  ++ +MP  + D V+ G+LL AC++H ++ +  Y+ E+L E++ S+SG 
Sbjct: 539 LGRAGFLEEAKSIIEEMPV-QPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGP 597

Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           YVL +N++A  G+W +   VRK M +  V K    S I++ G  H  +
Sbjct: 598 YVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFM 645



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 184/415 (44%), Gaps = 57/415 (13%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +  ++ +ID Y K G +++ R++FD++ + NV++W S+++G  K   +DE   LF  MP 
Sbjct: 55  VFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMP- 113

Query: 118 KLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMTK 160
             ++  +W ++V G A +                  ++ +    S  + C+GL       
Sbjct: 114 -ERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGV 172

Query: 161 LAREYFVQMPN-KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                  + P   D+   +A++  Y   GN+  A ++F+ M  RNV +WN++I  Y +NG
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNG 232

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE----- 271
           P   A+K+  +M +S   P+E T  S++++C  +    +    HA  +++   +      
Sbjct: 233 PAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILS 292

Query: 272 ---TSLTYKCT----CHYVF---------------WDWGFQLDVNSARLAFERLEAKDVV 309
                +  KC+      ++F                 +       +ARL F ++  ++VV
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVV 352

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT-FNL 368
           SW A+I  Y+ +G   +   LF  + +    P   TF  +L  C+    +  G +   ++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHV 412

Query: 369 MSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           +   + F+   E      + L D+  + G V+E   V  KM   ERD V   A++
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM--MERDCVSWNAMI 465



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 64/305 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G V +A ++FDEM   + VS  S+IT + +N    +A  +F+ M ES             
Sbjct: 201 GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVI 260

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    + +I+  +A +D Y K  R+ EAR +FD +   NV
Sbjct: 261 SACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------LIAK 140
            + TS++SGY  A      R +F +M    +NVVSW  ++ G   NG          + K
Sbjct: 321 IAETSMVSGYAMAASTKAARLMFTKMA--ERNVVSWNALIAGYTQNGENEEALSLFCLLK 378

Query: 141 LEVISWTTMCTGLERNAMTKLAREY---------------FVQMPNKDIVAWNAMITAYV 185
            E +  T         A   LA  +               F      DI   N++I  YV
Sbjct: 379 RESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G + +   +F  M +R+  +WNAMI  +A+NG    A++L   M  S   P+  T   
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIG 498

Query: 246 ILTSC 250
           +L++C
Sbjct: 499 VLSAC 503


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 248/454 (54%), Gaps = 28/454 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +ID Y K G  + A K F ++      SW +LIS Y K    DE   LFD+MP +  N
Sbjct: 49  NGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQR--N 106

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM--------------TKLAREYFV 167
           VVS+ +++     +G +  L  +    +  G+E N +                L+   F 
Sbjct: 107 VVSYNSLI-----SGNLQWLRQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFC 161

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP +++V+W +M+ AY  A  + +A  +F  MP +N  +W A++  + RNG    A  +
Sbjct: 162 YMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDV 221

Query: 228 LNLMFQSRFMPNETTCTSILTSC--EGML-ENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
              M +    P+  T  S++ +C  E ++      H   IR   ++  +L     C+ + 
Sbjct: 222 FKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIR--GDKSGNLFNVYVCNALI 279

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
             +    D+ SA   FE    +DVV+W  +I  ++ +GHG +   +F RM+++  +P+ +
Sbjct: 280 DMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHV 339

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF+GVLS C+HAGL  +G +  +LM R YG KP+AEHY+ L D+L R  ++ EAM ++ K
Sbjct: 340 TFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEK 399

Query: 405 MPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +P   ++H+ V GA+LGACR+HG++ +A    E+L EL+P ++G YV+ AN++AA G+W 
Sbjct: 400 VPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWG 459

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
              ++R  M ER ++K  + S+IE++   H  +A
Sbjct: 460 GAKRIRNVMKERCLEKEPACSRIELRNARHEFVA 493



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 26/270 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +  TG   EA  LFD+M Q + VS  S+I+  L+        A+   M   + N++  
Sbjct: 84  SFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVGM---EWNVILN 140

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K G  + +  VF  + E NV SWTS++  Y +A ++DE  R+F  MP  +KN
Sbjct: 141 NALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMP--VKN 198

Query: 122 VVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREYFV 167
            VSWT ++ G   NG                 +    ++ ++     + A+    ++   
Sbjct: 199 TVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHG 258

Query: 168 QMPNKD-------IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           Q+   D       +   NA+I  Y   G+M  A  LF + P R+V TWN +I  +A+NG 
Sbjct: 259 QIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGH 318

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              ++ +   M +++  PN  T   +L+ C
Sbjct: 319 GEESLAVFRRMIEAKVEPNHVTFLGVLSGC 348



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 70/304 (23%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--------------- 53
           ++ EA ++F +M   + VS  +++T F+RN    +A  +F+ M E               
Sbjct: 183 RLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVID 242

Query: 54  -------------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                    +  N+   +A+ID Y K G +  A  +F+     +
Sbjct: 243 ACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRD 302

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAK-LEVI 144
           V +W +LI+G+ +    +E   +F RM ++ K   N V++  V+ GC H GL  + L+++
Sbjct: 303 VVTWNTLITGFAQNGHGEESLAVFRRM-IEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLV 361

Query: 145 SWTTMCTGLE---------------RNAMTKLAREYFVQMPN---KDIVAWNAMITAYVD 186
                  G++               RN + + A     ++P+     I  W A++ A   
Sbjct: 362 DLMERQYGVKPKAEHYALLIDLLGRRNRLME-AMSLIEKVPDGIKNHIAVWGAVLGACRV 420

Query: 187 AGNM----AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            GN+      A +LF L P+ N   +  + + YA +G  G A ++ N+M + R +  E  
Sbjct: 421 HGNLDLARKAAEKLFELEPE-NTGRYVMLANIYAASGKWGGAKRIRNVM-KERCLEKEPA 478

Query: 243 CTSI 246
           C+ I
Sbjct: 479 CSRI 482


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 264/510 (51%), Gaps = 32/510 (6%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDG 67
           +++EA +L   + +P      +++   L+   L + + +   +  S    +   + ++D 
Sbjct: 103 RLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGLYISNRLLDM 162

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G + +A KVFDE+   ++ SW  +ISGY K    ++ R LFD+MP +  +  SWT 
Sbjct: 163 YAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR--DNFSWTA 220

Query: 128 VVLGCA-HNGLIAKLEVI--------SWTTMCT---------GLERNAMTKLAREYFVQM 169
           ++ GC  HN     LE+         S +  CT          +    M K    + ++M
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 170 P-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
             + D V W +++  Y   G++ +A  +F+ M +R+V +W  MI  Y +NG       L 
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF 340

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFW 285
             +  S  MPN+ T   +L +C  +    L    HA  +R+GF+  +S        +++ 
Sbjct: 341 RHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALV--HMYS 398

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G   D+ +A+  FE L   D+ SWT++++ Y+ HG   +    F  +LKSGTKPD I 
Sbjct: 399 KCG---DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIA 455

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+GVLS C+HAGLV+KG + F+ +   +G     +HY+C+ D+L RAGQ  EA  ++++M
Sbjct: 456 FIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEM 515

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P  + D  +  ALLG CR+HG++ +A    + L E++P +   YV  AN++A+ G   E 
Sbjct: 516 PI-KPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEE 574

Query: 466 AQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
           A +R+ M+ R + K    S IE++ + H  
Sbjct: 575 ANIRETMDSRGIVKKPGMSWIEIRREVHVF 604



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 135/329 (41%), Gaps = 72/329 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A K+FDEM   D  S   MI+ +++  +  KA  LF  MP   R+  + +A+I G
Sbjct: 167 GSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP--NRDNFSWTAIISG 224

Query: 68  YVKAGRVDEARKVFDEIYEGNVYS------------------------------------ 91
            V+  R +EA +++  + + + YS                                    
Sbjct: 225 CVQHNRPEEALELY-RLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLD 283

Query: 92  -----WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------- 136
                W SL+  Y K   ++E R +FD+M  + ++VVSWTT++     NG          
Sbjct: 284 SDEVVWCSLLDMYGKCGSIEEARYIFDKM--EERDVVSWTTMIHTYLKNGRREEGFALFR 341

Query: 137 -------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI-VAWNAMITAYVDAG 188
                  +            C  L    + K    Y V++       A +A++  Y   G
Sbjct: 342 HLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCG 401

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++  A  +F ++PQ ++++W +++  YA++G    A+    L+ +S   P+      +L+
Sbjct: 402 DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLS 461

Query: 249 SCEGMLENMLAHALAIRLGFEQETSLTYK 277
           +C        AHA  +  G E   S+  K
Sbjct: 462 AC--------AHAGLVDKGLEYFHSIKEK 482



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 64/253 (25%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-------- 55
           +G  G ++EA  +FD+M + D VS  +MI  +L+N    +  ALFR +  S         
Sbjct: 296 YGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTF 355

Query: 56  -------RNIVAE----------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
                   ++ AE                      SA++  Y K G ++ A+ VF+ + +
Sbjct: 356 AGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQ 415

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIAK- 140
            +++SWTSL+ GY +  Q D+    F+   L LK     + +++  V+  CAH GL+ K 
Sbjct: 416 PDLFSWTSLLVGYAQHGQHDKALHFFE---LLLKSGTKPDGIAFIGVLSACAHAGLVDKG 472

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
           LE         GL R                  I  +  +I     AG   +A  + N M
Sbjct: 473 LEYFHSIKEKHGLTRT-----------------IDHYACIIDLLARAGQFTEAESIINEM 515

Query: 201 PQR-NVWTWNAMI 212
           P + + + W A++
Sbjct: 516 PIKPDKYIWAALL 528


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 272/558 (48%), Gaps = 80/558 (14%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A K FD M + +  + ++MI        +  A A++   P   ++I +++A++ G  + G
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDP--VKSIPSQTALLTGLARCG 335

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG- 131
           R+ EAR +F++I +  V SW ++I+GY +   VDE + LFDRMP +  N +SW  ++ G 
Sbjct: 336 RITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR--NTISWAGMIAGY 393

Query: 132 ----------------------------------CAHNGLIAKLEVISWTTMCTGLERNA 157
                                             C+H G +     +    +  G + N+
Sbjct: 394 AQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS 453

Query: 158 MT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                           +  R+ F +M  KD V+WN+ I A V    +  A  +F+ M  R
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR 513

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---H 260
           +V +W  +I  YA+      A++    M      PN    T +L+ C G+    L    H
Sbjct: 514 DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIH 573

Query: 261 ALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            +AI+ G + E        S+ +KC C               +   F+ +E +D+ +W  
Sbjct: 574 TVAIKHGMDSELIVANALMSMYFKCGC-------------ADSHKVFDSMEERDIFTWNT 620

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
            I   + HG G +  +++  M   G  P+E+TFVG+L+ CSHAGLV++G + F  MSR Y
Sbjct: 621 FITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDY 680

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G  P  EHY+C+ D+L R G V+ A + +  MP  E D V+  ALLGAC++H +  +   
Sbjct: 681 GLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPI-EPDTVIWSALLGACKIHKNAEIGRR 739

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
             E+L   +PS++G YV+ +N++++ G W E A++RK M++R V K    S ++++ K H
Sbjct: 740 AAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVH 799

Query: 493 TLLAPMREMGYVVLKEVD 510
           + +   ++  +  ++E+D
Sbjct: 800 SFVTGDKQ--HEKIEEID 815



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 173/374 (46%), Gaps = 51/374 (13%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L +A  +F AMP   R+I+A ++MI  Y  +G +++AR +FD I  GNV + T L+SGY 
Sbjct: 49  LREAREVFDAMP--HRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYA 106

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
           +  +V + RR+FD MP +  N V+W  +V     NG I                      
Sbjct: 107 RLGRVLDARRVFDGMPER--NTVAWNAMVSCYVQNGDIT--------------------- 143

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           +AR  F  MP++D+ +WN+M+T Y  +  M  A  LF  MPQRN+ TW  MI  Y R   
Sbjct: 144 MARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQ 203

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTY 276
            G    +  +M      P+++   S+L++  G L+++    +   L ++ GFE +  +  
Sbjct: 204 HGKGWDIFRMMHHEGASPDQSNFASVLSAVTG-LQDLGVLEVLRPLVLKTGFESDVVIGT 262

Query: 277 KCTCHYVFWDWGFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
                Y         D ++  +A   F+ +  ++  +W+ MI A S+ G       ++ R
Sbjct: 263 SILNVYT-------RDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR 315

Query: 334 -MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
             +KS   P +   +  L+ C   G + + R  F  +       P    ++ +     + 
Sbjct: 316 DPVKS--IPSQTALLTGLARC---GRITEARILFEQIP-----DPIVVSWNAMITGYMQN 365

Query: 393 GQVKEAMRVVSKMP 406
           G V EA  +  +MP
Sbjct: 366 GMVDEAKELFDRMP 379



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 226/495 (45%), Gaps = 49/495 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +  +G +++A  LFD +S  +  +   +++ + R   +  A  +F  MPE  RN VA 
Sbjct: 72  SAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDARRVFDGMPE--RNTVAW 129

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +AM+  YV+ G +  AR++FD +   +V SW S+++GY  +RQ+ +   LF +MP   +N
Sbjct: 130 NAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP--QRN 187

Query: 122 VVSWTTVVLGCA----------------HNGLIA-KLEVISWTTMCTGLERNAMTKLARE 164
           +V+WT ++ G                  H G    +    S  +  TGL+   + ++ R 
Sbjct: 188 LVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRP 247

Query: 165 YFVQMP-NKDIVAWNAMITAYV-DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             ++     D+V   +++  Y  DA  +  A + F+ M +RN +TW+ MI   +  G   
Sbjct: 248 LVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRID 307

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
           AA+ +       + +P++T   + L  C  + E         R+ FEQ            
Sbjct: 308 AAIAVYG-RDPVKSIPSQTALLTGLARCGRITE--------ARILFEQIPDPI------V 352

Query: 283 VFWD---WGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           V W+    G+  +  V+ A+  F+R+  ++ +SW  MI  Y+ +G   +   L   + ++
Sbjct: 353 VSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRN 412

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  P   +       CSH G +E GR+  +L  +A G +  +   + L  +  +   ++ 
Sbjct: 413 GMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKA-GCQFNSYVCNALISMYGKCRNMEY 471

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
             +V ++M    +D V   + + A   +  +  A +I + ++  +   S   ++SA   A
Sbjct: 472 VRQVFNRM--RVKDTVSWNSFIAALVQNNMLEDARHIFDNMLS-RDVVSWTTIISAYAQA 528

Query: 458 ARGEWDEFAQVRKKM 472
            RG  DE  +  K M
Sbjct: 529 ERG--DEAVEFFKTM 541



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 16/202 (7%)

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           L R    + ARE F  MP++DI+AWN+MI+AY ++G +  A  LF+ +   NV T   ++
Sbjct: 43  LARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILL 102

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET 272
             YAR G    A ++ + M +   +      +  + + +  +   L  A+  R      +
Sbjct: 103 SGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNS 162

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY---SNHGHGFQVFR 329
            +T  C    +   W            F+++  +++V+WT MI  Y     HG G+ +FR
Sbjct: 163 MVTGYCHSRQMVDAWNL----------FKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 330 LFARMLKSGTKPDEITFVGVLS 351
           +   M   G  PD+  F  VLS
Sbjct: 213 M---MHHEGASPDQSNFASVLS 231


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/557 (28%), Positives = 274/557 (49%), Gaps = 83/557 (14%)

Query: 8   GKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLP--------------------- 42
           G  +EA  LFDEM      PD ++  S+++   +  DL                      
Sbjct: 213 GMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL 272

Query: 43  --------------KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                         +A  L     ES+ ++V  + ++ GYVK+ ++D+AR++FD++ E +
Sbjct: 273 NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERS 332

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHN-----GLIAKL 141
           + SWT+++SGY +     E   LF +M  +  + + V+  TV+  C H      G     
Sbjct: 333 LVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHA 392

Query: 142 EVISWTTMCTGLERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
            ++++  +  G   NA+  L         A   F Q+P K   +WN+M+  +  +G + +
Sbjct: 393 FIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDK 452

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A + FN +P++++ +WN M++ Y ++     + ++   M  S   P++TT  S+L+SC  
Sbjct: 453 ARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAK 512

Query: 253 MLENMLAHALAIRLGFEQE------------TSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           +    L H + + +  E+               +  KC C            V  A   F
Sbjct: 513 V--GALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGC------------VEMAYEIF 558

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
            ++  K+V  WTAM+ AY+  G   +   L+  M + G KPD +TF+ +L+ CSH GLV+
Sbjct: 559 TQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVD 618

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G K FN +   Y   P   HY C+ D+L R G ++E ++ + +MP  E D  +  +L+ 
Sbjct: 619 EGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPI-EPDVSIWSSLMR 677

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKV 479
           ACR H +V +A+   ++LIE+ P+++GA+VL +N++A  G WD+ ++VR K+ E  V K 
Sbjct: 678 ACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQ 737

Query: 480 ASFSQIEVKGKDHTLLA 496
             F+ IE  G  H  +A
Sbjct: 738 PGFTMIEQNGVVHEFVA 754



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 174/419 (41%), Gaps = 52/419 (12%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           RN    + ++  Y K G++ E  ++F+++   +V SW ++IS Y       E   LFD M
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM 225

Query: 116 PLK--LKNVVSWTTVVLGCA-----HNGLIAKLEVISWTTMCTGLERNAMTKLARE---- 164
            +   L + ++  ++V  CA       G    L ++       G   N +  +  +    
Sbjct: 226 LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKM 285

Query: 165 -------YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
                          D+V W  +++ YV +  + +A +LF+ M +R++ +W  M+  Y +
Sbjct: 286 DEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQ 345

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-----------------------EGML 254
            G    +++L   M     +P+E    ++L++C                       +G L
Sbjct: 346 GGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFL 405

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKD 307
            N L    A + G   E   T++         W   LD       V+ AR  F ++  KD
Sbjct: 406 GNALLDLYA-KCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKD 464

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +VSW  M+ AY  H    + F +F +M  S  KPD+ T + +LS C+  G +  G    N
Sbjct: 465 IVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV-N 523

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +          A   + L D+  + G V+ A  + +++   E++  V  A++ A  + G
Sbjct: 524 VYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQII--EKNVFVWTAMMAAYAMEG 580



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 57/299 (19%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------ 54
           + K+ +A +LFD+M++   VS  +M++ +++     ++  LF+ M      P+       
Sbjct: 315 SNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTV 374

Query: 55  ----------------QRNIVAESAMIDG---------YVKAGRVDEARKVFDEIYEGNV 89
                              IV    ++DG         Y K G++DEA + F+++   + 
Sbjct: 375 LSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA 434

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA---------- 139
            SW S++ G+ ++  VD+ R  F+++P   K++VSW T+V     + L            
Sbjct: 435 ASWNSMLDGFCRSGGVDKARDFFNKIP--EKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 140 -------KLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
                  K  +IS  + C  +           Y  +     D +   A+I  Y   G + 
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVE 552

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A E+F  + ++NV+ W AM+  YA  G    A+ L   M +    P+  T  ++L +C
Sbjct: 553 MAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 169/542 (31%), Positives = 276/542 (50%), Gaps = 64/542 (11%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA ++F+++  P       MIT + R++ L  A  LF  MP   R++V+ ++MI G 
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP--VRDVVSWNSMISGC 107

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           V+ G ++ A K+FDE+ E +V SWT++++G F++ +VD+  RLF +MP  +K+  +W ++
Sbjct: 108 VECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMP--VKDTAAWNSM 165

Query: 129 VLGCAHNGLI---AKL-------EVISWTTMCTGLERNAMTKLAREYFVQM--------- 169
           V G    G +    KL        VISWTTM  GL++N  +  A + F  M         
Sbjct: 166 VHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTS 225

Query: 170 -PNKDIVAWNA-----------------------------MITAYVDAGNMAQASELFNL 199
            P   ++   A                             +IT Y +   +  + ++F+ 
Sbjct: 226 RPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDE 285

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-N 256
                V  W A++  Y+ N     A+ + + M ++  +PN++T  S L SC   G L+  
Sbjct: 286 KVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG 345

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H +A++LG E +  +       Y   D G   +VN A   F ++  K +VSW ++I+
Sbjct: 346 KEMHGVAVKLGLETDAFVGNSLVVMYS--DSG---NVNDAVSVFIKIFKKSIVSWNSIIV 400

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + HG G   F +F +M++   +PDEITF G+LS CSH G +EKGRK F  MS      
Sbjct: 401 GCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHI 460

Query: 377 PRA-EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            R  +HY+C+ DIL R G++KEA  ++ +M     + V L ALL ACR+H DV   +   
Sbjct: 461 DRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWL-ALLSACRMHSDVDRGEKAA 519

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
             +  L   SS AYVL +N++A+ G W   +++R KM++  + K    S + ++GK H  
Sbjct: 520 AAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEF 579

Query: 495 LA 496
            +
Sbjct: 580 FS 581



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 188/397 (47%), Gaps = 33/397 (8%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I  ++ + R+DEAR+VF+++   +V  +T +I+GY ++ ++ +   LFD MP++  +VV
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVR--DVV 98

Query: 124 SWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW +++ GC   G           + +  V+SWT M  G  R+     A   F QMP KD
Sbjct: 99  SWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKD 158

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
             AWN+M+  Y+  G +  A +LF  MP +NV +W  MI    +N   G A+ L   M +
Sbjct: 159 TAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLR 218

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVFW 285
                     T ++T+C         +  H L I+LGF  E     + +T+   C     
Sbjct: 219 CCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCK---- 274

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                  +  +R  F+    + V  WTA++  YS +        +F+ ML++   P++ T
Sbjct: 275 ------RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQST 328

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F   L+ CS  G ++ G++   +  +  G +  A   + L  +   +G V +A+ V  K+
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI 387

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
              ++  V   +++  C  HG  + A  I  ++I L 
Sbjct: 388 --FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLN 422


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 251/479 (52%), Gaps = 54/479 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  ++  +  +F  MPE  RN V  +AMI GY+  G    A  +F+++     
Sbjct: 5   SLVCMYAKCGNVVDSRKVFDYMPE--RNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTA 62

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            +W  +I G+ ++   +  RR FD +P +L+NVV+WT +V G A                
Sbjct: 63  VTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYA---------------- 106

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                RNA  + ARE F  MP ++  AW++MI+ Y   GN+ +A  +F+ +P RN+  WN
Sbjct: 107 -----RNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWN 161

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE------NMLAHA 261
           ++I  YA+NG    A++    M    F P+E T  S+L++C   G+L+      +M+ H 
Sbjct: 162 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 221

Query: 262 LAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             I+L          +  KC             D+ +ARL FE +  ++   W +MI  +
Sbjct: 222 -GIKLNQFVLNGLVDMYAKCG------------DLANARLIFEGMAHRNRACWNSMISGF 268

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HG   +    F RM  S   PDEITF+ VLS C+H G V  G + F+ M + YG    
Sbjct: 269 AIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTG 327

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            +HY CL D+L RAG++KEA  ++ +MP    D VV GALLGACR+H D+ MAD + E +
Sbjct: 328 IKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND-VVWGALLGACRVHLDMEMADRVVEEI 386

Query: 439 IELQPS-SSGA---YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
           +++  + SSG    YVL +N++AA   W++  ++R +M  +  +K +  S I      H
Sbjct: 387 VKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTH 445



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 28/281 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G  K A  LF++MS    V+   MI  F R+ D   A   F  +P   RN+V  + M+D
Sbjct: 44  NGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVD 103

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +   ++ AR+VF+ + + N ++W+S+ISGY K   V E R +FDR+P  ++N+V+W 
Sbjct: 104 GYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIP--VRNLVNWN 161

Query: 127 TVVLGCAHNGL-------IAKLEV-------ISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +++ G A NG          K++        ++  ++ +   +  +    ++    M +K
Sbjct: 162 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 221

Query: 173 DI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
            I       N ++  Y   G++A A  +F  M  RN   WN+MI  +A +G    A++  
Sbjct: 222 GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFF 281

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
             M  S   P+E T  S+L++C        AH   +  G E
Sbjct: 282 GRMEDSHEGPDEITFLSVLSAC--------AHGGFVNAGLE 314


>gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera]
          Length = 833

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 167/536 (31%), Positives = 266/536 (49%), Gaps = 68/536 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A+++F +M   D VS  SMI+ ++ N  + +A  +F  M    +++V+ + +I G
Sbjct: 271 GDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGM--VLKDVVSWNLVIAG 328

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            V  G+VD A + F E+   ++ SWT++ISG   A ++ E R LF+ MP++  +V +W T
Sbjct: 329 LVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVR--DVRAWNT 386

Query: 128 VVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQMPNK----- 172
           ++ G   NG I   EV+          SW  M  GL RN   + A   FV+MP K     
Sbjct: 387 MIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLFVEMPQKCRRSW 446

Query: 173 --------------------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                                     D V+W  +I  Y + G +  A  +F LMP R+  
Sbjct: 447 NSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDAT 506

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
            WN +I     N      +K    M +    P+E T TS+LT C  +    L    HA  
Sbjct: 507 AWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQV 566

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            + GF    +++      Y         + NSA L F  + + DV+SW ++I   +++G+
Sbjct: 567 TKTGFNYFVAVSNAMVTLYARCG-----NSNSALLLFSSMTSHDVISWNSIICGLAHNGN 621

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +   +F +M  +  KP+ ITFVGVLS CSHAGLV++G+  F+ M      +P  EHY+
Sbjct: 622 GVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYT 681

Query: 384 CLADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           C+ D+L R G + EAM  + +M  +  E    V GA+LGACR+H ++++ +  GER++E+
Sbjct: 682 CIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNIQVGEIAGERILEI 741

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +P            H   G+ ++  +V  +M E+ VKK  + S +EV G  H  L+
Sbjct: 742 EP------------HNFCGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLS 785



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/416 (31%), Positives = 198/416 (47%), Gaps = 31/416 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G  +EA  LFDEM Q + V+  +MI  + +N    +  +LF  MPE  R+I + + MI 
Sbjct: 208 NGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPE--RDIFSYNTMIA 265

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +K G ++ A ++F ++   +V SW S+ISGY     + E  R+F  M   LK+VVSW 
Sbjct: 266 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGM--VLKDVVSWN 323

Query: 127 TVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            V+ G    G +   E          + SWTTM +GL        AR  F  MP +D+ A
Sbjct: 324 LVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRA 383

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN MI  Y++ G +     LF  MPQR+  +WN MI+   RN     AM+L   M Q   
Sbjct: 384 WNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLFVEMPQK-- 441

Query: 237 MPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
                +  SI+    G++ N L   AHA   +  F    S T     ++   + G   +V
Sbjct: 442 --CRRSWNSIVF---GLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYF---ETG---EV 490

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++A   FE + A+D  +W  +I     + HG +  + F +M + G  PDE TF  VL+ C
Sbjct: 491 DTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTIC 550

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           S    +  GR+    +++  GF       + +  +  R G    A+ + S M  H+
Sbjct: 551 SDLPTLHLGRQIHAQVTKT-GFNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSHD 605



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 33/235 (14%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N+    S IS   +    +E + LFD MP +  N V++  ++ G   NG   +       
Sbjct: 194 NLKPLNSRISDCMRNGFTEEAQMLFDEMPQR--NTVTYNAMIRGYFQNGHFGE------- 244

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                             F +MP +DI ++N MI   +  G++  ASE+F  MP R+V +
Sbjct: 245 --------------GVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVS 290

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           WN+MI  Y  NG  G A+++    F    + +  +   ++    G+ +  LA      +G
Sbjct: 291 WNSMISGYVSNGLIGEALRV----FSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMG 346

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                S T   +             +  AR  FE +  +DV +W  MI  Y  +G
Sbjct: 347 TRDIASWTTMIS------GLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYLENG 395


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 255/521 (48%), Gaps = 85/521 (16%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    + +I+ Y K G    A KVFDE+   N+YSW  ++SGY K  ++   R+LFD+MP
Sbjct: 85  NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP 144

Query: 117 LKLKNVVSWTTVV---------------------LGCAHN-------------------- 135
            K  +VVSW T+V                     LG  +N                    
Sbjct: 145 EK--DVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELS 202

Query: 136 ----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
                     G ++ L VIS + +    + + M   AR  F +M  +D++AW  M++ Y 
Sbjct: 203 KQAHGQVLVAGFLSNL-VISSSVLDAYAKCSEMGD-ARRLFDEMIIRDVLAWTTMVSGYA 260

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G++  A ELF+LMP++N   W ++I  YAR+     A++L   M      P++ T +S
Sbjct: 261 QWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSS 320

Query: 246 IL---TSCEGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNS 295
            L    S   +      H   IR      T        +  KC C            +  
Sbjct: 321 CLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGC------------LEV 368

Query: 296 ARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            RL F+ +  K DVV W  +I + + HG G +  ++F  M++ G KPD IT + +L+ CS
Sbjct: 369 GRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACS 428

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           H+GLV++G + +  ++  +G  P  EHY+CL D+L RAG     M  + KMP    D  +
Sbjct: 429 HSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDE-I 487

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
             ALLG CR+HG++     + E++IEL P SS AYVL +++HAA G W+    VR+ M E
Sbjct: 488 WNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNE 547

Query: 474 RRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEV 509
           R V+K  + S IE++ K H+      L P++E+ Y+ LK++
Sbjct: 548 RHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQL 588



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------- 51
           S +   GK+K A KLFD+M + D VS  +M+  + ++     A   +R +          
Sbjct: 125 SGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEY 184

Query: 52  --------------------PESQ-------RNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                  Q        N+V  S+++D Y K   + +AR++FDE+
Sbjct: 185 SFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEM 244

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
              +V +WT+++SGY +   V+  R LFD MP   KN V+WT+++ G A + L  K   +
Sbjct: 245 IIRDVLAWTTMVSGYAQWGDVEAARELFDLMP--EKNPVAWTSLIAGYARHDLGHKALEL 302

Query: 145 SWTTMCTGLERNAMT-----------------KLAREYFVQM---PNKDIVAWNAMITAY 184
               M   +  +  T                 K    Y ++    PN  +V+  ++I  Y
Sbjct: 303 FTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVS--SLIDMY 360

Query: 185 VDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
              G +     +F+LM  + +V  WN +I   A++G    A+++ + M +    P+  T 
Sbjct: 361 SKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITL 420

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
             +L +C        +H+  ++ G     S+T   +CH V 
Sbjct: 421 IVLLNAC--------SHSGLVQEGLRLYESIT---SCHGVI 450


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 244/463 (52%), Gaps = 32/463 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+  ++A+I  Y  +G V  AR VFD   +G+V +W  +ISGY +++Q DE  +LFD M 
Sbjct: 153 NVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEME 212

Query: 117 LK--LKNVVSWTTVVLGCA-----HNGLIAKLEVISWTTMCTGLERNAMTKL-------- 161
               L + ++  +V+  C+     + G      V         +  NA+  +        
Sbjct: 213 RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A   F  M ++D+++W A++T + + G +  A   F+ MP+R+  +W AMID Y +   
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLT 275
               + L   M  +   P+E T  SILT+C        AH  A+ LG     +  +  + 
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTAC--------AHLGALELGEWIKAYIDKNEIK 384

Query: 276 YKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                     D  F   +V  A   F  +  +D +SWTA+I   + +G+G +   +F++M
Sbjct: 385 IDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQM 444

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           LK+   PDE+T +GVL  C+H+G+V+KG+K F  M+  +G +P   HY C+ D+L RAG 
Sbjct: 445 LKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGH 504

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +KEA  V+  MP  + + +V G+LLGACR+H D  MA+   ++++EL+P +   YVL  N
Sbjct: 505 LKEAHEVIKNMPV-KPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCN 563

Query: 455 VHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKGKDHTLLA 496
           ++AA   W++  +VRK  M+R +KK    S IE+ G  H  +A
Sbjct: 564 IYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVA 606



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 59/309 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMPES--- 54
           +  +G+V  A  +FD  S+ D V+   MI+ + R+    ++  LF      R +P S   
Sbjct: 164 YSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITL 223

Query: 55  -------------------QRNI---------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
                               R +         V E+A+ID Y   G +D A  +FD +  
Sbjct: 224 VSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKS 283

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC-------------- 132
            +V SWT++++G+    QV   R  FD+MP   ++ VSWT ++ G               
Sbjct: 284 RDVISWTAIVTGFTNLGQVGLARNYFDKMP--ERDFVSWTAMIDGYLQVNRFKEVLSLFR 341

Query: 133 ---AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAG 188
              A N    +  ++S  T C  L    + +  + Y  +   K D    NA+I  Y + G
Sbjct: 342 EMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCG 401

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+ +A  +FN MP R+  +W A+I   A NG    A+ + + M ++   P+E TC  +L 
Sbjct: 402 NVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLC 461

Query: 249 SC--EGMLE 255
           +C   GM++
Sbjct: 462 ACTHSGMVD 470



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 162/404 (40%), Gaps = 87/404 (21%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKL 119
           G ++ AR VFD +   N + W ++I GY +    +    ++  M            P  L
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K     T V  G   +  I KL          G   N         FVQ         NA
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKL----------GFSSNV--------FVQ---------NA 159

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y  +G ++ A  +F+   + +V TWN MI  Y R+     +MKL + M + R +P+
Sbjct: 160 LIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPS 219

Query: 240 ETTCTSILTSCEGM-----------------------LENMLAH----------ALAIRL 266
             T  S+L++C  +                       LEN L            AL I  
Sbjct: 220 SITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFD 279

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
             +    +++       F + G    V  AR  F+++  +D VSWTAMI  Y       +
Sbjct: 280 NMKSRDVISWTAIV-TGFTNLG---QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKE 335

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS--- 383
           V  LF  M  +  KPDE T V +L+ C+H G +E G        +AY  K   +  S   
Sbjct: 336 VLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWI-----KAYIDKNEIKIDSFVG 390

Query: 384 -CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             L D+    G V++A+R+ + MP   RD +   A++    ++G
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMP--HRDKISWTAVIFGLAING 432



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 32/300 (10%)

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV---DAGNMAQAS 194
           +A+L+ I   T+CTGL  N +                    A I A+    + G+M  A 
Sbjct: 32  MAQLKQIHSQTICTGLISNPIVP------------------AQIIAFCCKHELGDMEYAR 73

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCE 251
            +F+ MP  N + WN MI  Y+R G   +A+ +   M +   MP+E T   +L   T   
Sbjct: 74  MVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDT 133

Query: 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            +      H   ++LGF     +      + +   +    +V+ AR  F+R    DVV+W
Sbjct: 134 AVKCGRELHDHIVKLGFSSNVFVQ-----NALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             MI  Y+      +  +LF  M +    P  IT V VLS CS    +  G++    + +
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV-K 247

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
               +P     + L D+    G +  A+ +   M    RD +   A++      G V +A
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNM--KSRDVISWTAIVTGFTNLGQVGLA 305



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 67/290 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G +  A  +FD M   D +S  +++T F     +  A   F  MPE  R+ V+ +A
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPE--RDFVSWTA 322

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNV---------------------------------- 89
           MIDGY++  R  E   +F E+   N+                                  
Sbjct: 323 MIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNE 382

Query: 90  -----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL------- 137
                +   +LI  YF    V++  R+F+ MP + K  +SWT V+ G A NG        
Sbjct: 383 IKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDK--ISWTAVIFGLAINGYGEEALDM 440

Query: 138 ---IAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYV 185
              + K  +      C G+      + M    +++F +M  +     ++  +  M+    
Sbjct: 441 FSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLG 500

Query: 186 DAGNMAQASELFNLMPQR-NVWTWNAMID--RYARNG--PEGAAMKLLNL 230
            AG++ +A E+   MP + N   W +++   R  R+    E AA ++L L
Sbjct: 501 RAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILEL 550


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 251/479 (52%), Gaps = 54/479 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  ++  +  +F  MPE  RN V  +AMI GY+  G    A  +F+++     
Sbjct: 134 SLVCMYAKCGNVVDSRKVFDYMPE--RNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTA 191

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            +W  +I G+ ++   +  RR FD +P +L+NVV+WT +V G A                
Sbjct: 192 VTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYA---------------- 235

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                RNA  + ARE F  MP ++  AW++MI+ Y   GN+ +A  +F+ +P RN+  WN
Sbjct: 236 -----RNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWN 290

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE------NMLAHA 261
           ++I  YA+NG    A++    M    F P+E T  S+L++C   G+L+      +M+ H 
Sbjct: 291 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 350

Query: 262 LAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             I+L          +  KC             D+ +ARL FE +  ++   W +MI  +
Sbjct: 351 -GIKLNQFVLNGLVDMYAKCG------------DLANARLIFEGMAHRNRACWNSMISGF 397

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HG   +    F RM  S   PDEITF+ VLS C+H G V  G + F+ M + YG    
Sbjct: 398 AIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTG 456

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            +HY CL D+L RAG++KEA  ++ +MP    D VV GALLGACR+H D+ MAD + E +
Sbjct: 457 IKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND-VVWGALLGACRVHLDMEMADRVVEEI 515

Query: 439 IELQPS-SSGA---YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
           +++  + SSG    YVL +N++AA   W++  ++R +M  +  +K +  S I      H
Sbjct: 516 VKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTH 574



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 28/281 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G  K A  LF++MS    V+   MI  F R+ D   A   F  +P   RN+V  + M+D
Sbjct: 173 NGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVD 232

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY +   ++ AR+VF+ + + N ++W+S+ISGY K   V E R +FDR+P  ++N+V+W 
Sbjct: 233 GYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIP--VRNLVNWN 290

Query: 127 TVVLGCAHNGL-------IAKLEV-------ISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +++ G A NG          K++        ++  ++ +   +  +    ++    M +K
Sbjct: 291 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 350

Query: 173 DI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
            I       N ++  Y   G++A A  +F  M  RN   WN+MI  +A +G    A++  
Sbjct: 351 GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFF 410

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
             M  S   P+E T  S+L++C        AH   +  G E
Sbjct: 411 GRMEDSHEGPDEITFLSVLSAC--------AHGGFVNAGLE 443



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 28/283 (9%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
           D++   +++  Y   GN+  + ++F+ MP+RN  TWNAMI  Y  NG   +A+ L   M 
Sbjct: 128 DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187

Query: 232 ---------FQSRFMPNETTCTS--ILTSCEGMLENMLAHALAIRLGFEQETSL-----T 275
                        F  +  T T+          L N++   + +  G+ +   +      
Sbjct: 188 IRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVD-GYARNAEMEAAREV 246

Query: 276 YKCTCHYVFWDWGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           ++      F+ W   +       +V  AR  F+R+  +++V+W ++I  Y+ +G   +  
Sbjct: 247 FEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEAL 306

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
             F +M   G +PDE+T   VLS CS  GL++ G+K  ++M+   G K      + L D+
Sbjct: 307 EAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK-GIKLNQFVLNGLVDM 365

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             + G +  A  +   M    R+     +++    +HG  + A
Sbjct: 366 YAKCGDLANARLIFEGMA--HRNRACWNSMISGFAIHGQSKEA 406


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 282/603 (46%), Gaps = 120/603 (19%)

Query: 2   SQFGCTGKVKEATKLFDE--MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-- 57
           + +   G +K + K+F +  +   D V   +MIT +  NHD   A  LF  M   QR+  
Sbjct: 87  AAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDM---QRDNF 143

Query: 58  ---------------IVAE------------------------SAMIDGYVKAGR----- 73
                          +VAE                        +A+I  YVK        
Sbjct: 144 RPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQ 203

Query: 74  ----VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
               + EARK+FDE+   +  SWT++I+GY K   +D  +   +    KL   V+W  ++
Sbjct: 204 SSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLG--VAWNAMI 261

Query: 130 LGCAHNGL------------IAKLEVISWT-----TMCT-------GLERNAM------- 158
            G AH GL            ++K+++  +T     ++C        G E +A        
Sbjct: 262 SGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVAN 321

Query: 159 ----------------------TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                                   +A+E F +MP +D+V+WN +++ YV+   M +A   
Sbjct: 322 PAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSF 381

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML 254
           FN MP++N+ +W  MI   A+ G    A+K  N M    F P +      + SC   G L
Sbjct: 382 FNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSL 441

Query: 255 EN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
           ++    HA  +R G+E  +SL+       ++   G    V++A   F  +   D +SW A
Sbjct: 442 KHGRQLHAQVVRYGYE--SSLSAGNALITMYARCGV---VDAAHCLFINMPCVDAISWNA 496

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI A   HG G Q   LF  MLK G  PD I+F+ V+S CSHAGLV++GRK F+ M   Y
Sbjct: 497 MIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVY 556

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G  P  EHY+ + D+L RAG+  EA  V+  M P E    +  ALL  CR+HG++ +   
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESM-PFEPGAPIWEALLAGCRIHGNIDLGIE 615

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             ERL EL+P   G YVL +N++A  G+W++ A+VRK M +R VKK    S IEV+ K H
Sbjct: 616 AAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVH 675

Query: 493 TLL 495
           + L
Sbjct: 676 SFL 678



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 189/498 (37%), Gaps = 114/498 (22%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K+ +++ AR +FDEI + ++ + T+LI+ Y  A  +   R++F   PL +++ V
Sbjct: 54  LIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSV 113

Query: 124 SWTTVVLGCAHN--------------------------------GLIAKLEVISWTTMC- 150
            +  ++   +HN                                 L+A+ E       C 
Sbjct: 114 FYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCA 173

Query: 151 -----TGLERNAMTKLAREY---------------------FVQMPNKDIVAWNAMITAY 184
                TG   + +  L   Y                     F +MPN+D ++W  +IT Y
Sbjct: 174 VVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGY 233

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           V   ++  A E  N   ++    WNAMI  YA  G    A ++   M  S+   +E T T
Sbjct: 234 VKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFT 293

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETS--------------------LTYKCTCHYV- 283
           S+++ C        A+A   RLG E                        +T+   C  V 
Sbjct: 294 SVISVC--------ANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVD 345

Query: 284 -------------FWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
                           W   L        ++ A+  F  +  K+++SW  MI   +  G 
Sbjct: 346 IAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGF 405

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +  + F RM   G +P +  F G +  CS  G ++ GR+    + R YG++      +
Sbjct: 406 AEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGN 464

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--- 440
            L  +  R G V  A  +   MP    D +   A++ A   HG    A  + E +++   
Sbjct: 465 ALITMYARCGVVDAAHCLFINMPC--VDAISWNAMIAALGQHGQGTQAIELFEEMLKEGI 522

Query: 441 LQPSSSGAYVLSANVHAA 458
           L    S   V+SA  HA 
Sbjct: 523 LPDRISFLTVISACSHAG 540


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 157/482 (32%), Positives = 248/482 (51%), Gaps = 55/482 (11%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFDEIYEGNV 89
           +I   +R+ D+  A  +F  M    +N +  ++++ G  K   R+ EA ++FDEI E + 
Sbjct: 67  IIARCVRSGDIDGALRVFHGM--RAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-------- 141
           +S+  ++S Y +    ++ +  FDRMP K  +  SW T++ G A  G + K         
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFK--DAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
               +SW  M +G       + A  +F   P + +VAW AMIT Y+ A  +  A  +F  
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 200 MP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           M   +N+ TWNAMI  Y  N      +KL   M +    PN +  +S L           
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSAL----------- 291

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
                  LG    + ++  C C  +   W            FE ++ KDVV+W AMI  Y
Sbjct: 292 -------LGCTLTSLISMYCKCGELGDAWKL----------FEVMKKKDVVAWNAMISGY 334

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HG+  +   LF  M+ +  +PD ITFV VL  C+HAGLV  G   F  M R Y  +P+
Sbjct: 335 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 394

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGE 436
            +HY+C+ D+L RAG+++EA++++  MP  PH     V G LLGACR+H +V +A++  E
Sbjct: 395 PDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA---AVFGTLLGACRVHKNVELAEFAAE 451

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VK----KVASFSQIEVKGK 490
           +L++L   ++  YV  AN++A++  W++ A+VRK+M+    VK    KV  +S IE++ K
Sbjct: 452 KLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNK 511

Query: 491 DH 492
            H
Sbjct: 512 VH 513



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 133/267 (49%), Gaps = 28/267 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
            ++ EA +LFDE+ +PD  S   M++ ++RN +  KA++ F  MP   ++  + + MI G
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP--FKDAASWNTMITG 164

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G +++AR++F  + E N  SW ++ISGY +   +++    F   P  ++ VV+WT 
Sbjct: 165 YARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAP--VRGVVAWTA 222

Query: 128 VVLG-----------CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------P 170
           ++ G                +     +++W  M +G   N+  +   + F  M      P
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 171 NKDIVA-------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           N   ++         ++I+ Y   G +  A +LF +M +++V  WNAMI  YA++G    
Sbjct: 283 NSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADK 342

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+ L   M  ++  P+  T  ++L +C
Sbjct: 343 ALCLFREMIDNKIRPDWITFVAVLLAC 369



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 45/263 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +++A+  F        V+  +MIT +++   +  AEA+F+ M    +N+V  +AMI G
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDM-TVNKNLVTWNAMISG 258

Query: 68  YVKAGRVDEARKVFDEIYEGNVY-------------SWTSLISGYFKARQVDEGRRLFDR 114
           YV+  R ++  K+F  + E  +              + TSLIS Y K  ++ +  +LF+ 
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEV 318

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M  K K+VV+W  ++ G A +G   K        +C          L RE        D 
Sbjct: 319 M--KKKDVVAWNAMISGYAQHGNADK-------ALC----------LFREMIDNKIRPDW 359

Query: 175 VAWNAMITAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNGPEGAAMKL 227
           + + A++ A   AG +      F  M       PQ + +T   M+D   R G    A+KL
Sbjct: 360 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYT--CMVDLLGRAGKLEEALKL 417

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
           +  M    F P+     ++L +C
Sbjct: 418 IRSM---PFRPHAAVFGTLLGAC 437


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 218/413 (52%), Gaps = 28/413 (6%)

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G     ++D ARK+FD++    V  W  +I  Y     V   R LFD MP +  ++VSW 
Sbjct: 109 GLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPER--DIVSWN 166

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
           +++LG A  G +A                      AR  F +MP K++++W +MI AY D
Sbjct: 167 SMILGYAKGGKVAN---------------------ARGLFEKMPEKNVISWTSMIGAYAD 205

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
             ++  A   F  MPQRNV +WN+MI  YA++G    ++ L   M      P+  T  S+
Sbjct: 206 TDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSV 265

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           L++C  + +      +    G   ++ +        ++   G   DV+ A   F ++  +
Sbjct: 266 LSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCG---DVDKAFAVFIKIGKR 322

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DV  W  +I A + HG   +  ++F  M K+G KP++ TF   L  CSH GLVE+G   F
Sbjct: 323 DVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIF 382

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           N M + Y   P+  HY CL D+L R GQ++EAM +V  M P + D  + GALLG CR+ G
Sbjct: 383 NSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDM-PFQPDVAIWGALLGGCRVTG 441

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
           D+++A+ + E+  E++ + SG YVL +N+HA+ G+W E A  RKKM E+++ K
Sbjct: 442 DLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISK 494



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 23/266 (8%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K+  A K+FD+M          MI  ++   D+  A  LF  MPE  R+IV+ ++MI GY
Sbjct: 115 KLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPE--RDIVSWNSMILGY 172

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            K G+V  AR +F+++ E NV SWTS+I  Y     ++  R  F+ MP   +NVVSW ++
Sbjct: 173 AKGGKVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMP--QRNVVSWNSM 230

Query: 129 VLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPN 171
           +   A +G       L  +++           +S  + C+ L      K        +  
Sbjct: 231 ISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQ 290

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            +++   A+   Y   G++ +A  +F  + +R+V+ WN +I   A +G    A+K+  LM
Sbjct: 291 SEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLM 350

Query: 232 FQSRFMPNETTCTSILTSCE--GMLE 255
            ++   PN+ T TS L +C   G++E
Sbjct: 351 RKTGLKPNDFTFTSALFACSHGGLVE 376



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 164/378 (43%), Gaps = 57/378 (15%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEG 108
           +S   IV  +AMI GY   G   E  ++FDE+ +  +    +++  +I+   +      G
Sbjct: 14  DSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRG 73

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
           +R+   +   +K+    +  V     N +  K+      +   GL  N     AR+ F  
Sbjct: 74  KRVHCEI---VKSGFESSYAVANSLFN-MYLKMP----ASFDVGLASNCKLDYARKIFDD 125

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           M  + +  WN MI  YV+ G++  A ELF++MP+R++ +WN+MI  YA+ G    A  L 
Sbjct: 126 MCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLF 185

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
             M +     N  + TS+                   +G   +T                
Sbjct: 186 EKMPEK----NVISWTSM-------------------IGAYADTD--------------- 207

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+ +AR  FE +  ++VVSW +MI +Y+ HG   +   LF +M   G  PD  TFV 
Sbjct: 208 ---DLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVS 264

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS CS+ G +E G+    L       +      + L ++  + G V +A  V  K+   
Sbjct: 265 VLSACSNLGDLEFGKYIHYLSGDLS--QSEVMVGTALTEMYAQCGDVDKAFAVFIKI--G 320

Query: 409 ERDHVVLGALLGACRLHG 426
           +RD      ++ A  LHG
Sbjct: 321 KRDVFCWNVIIKALALHG 338


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 173/565 (30%), Positives = 276/565 (48%), Gaps = 66/565 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----------- 55
           +G + EA +LF  M +PD  S  SM++ F ++    ++   F  M               
Sbjct: 94  SGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSA 153

Query: 56  --------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      ++   SA+ID Y K G V  A +VF  + E N+
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNL 213

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCA-----HNGLIAKLE 142
            +W SLI+ Y +     E   +F RM       + V+  +VV  CA       GL     
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273

Query: 143 VISWTTMCTGLER-NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           V+        L   NA+  +         AR  F +M  +++V+  +M++ Y  A ++  
Sbjct: 274 VVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKA 333

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F+ M QRNV +WNA+I  Y +NG    A++L  L+ +    P   T  ++L++C  
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393

Query: 253 MLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDV 308
           + + +L   AH   ++ GFE ++             D   +   +      FE+++ +D 
Sbjct: 394 LADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDC 453

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSW A+I+ Y+ +G+G +  ++F +ML  G KPD +T +GVL  CSHAGLVE+GR  F  
Sbjct: 454 VSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS 513

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M   +G  P  +HY+C+ D+L RAG + EA  ++  MP +  D VV G+LL AC++HG++
Sbjct: 514 MEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNP-DAVVWGSLLAACKVHGNI 571

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEV 487
            M  +  E+L+E+ P +SG YVL +N++A  G W +  +VRK M ++ V K    S IEV
Sbjct: 572 EMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEV 631

Query: 488 KGKDHTLLA-----PMREMGYVVLK 507
           + + H  L      P R+  Y VLK
Sbjct: 632 ESRVHVFLVKDKSHPHRKQIYSVLK 656



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 194/422 (45%), Gaps = 57/422 (13%)

Query: 51  MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110
           M +    I  ++ +ID Y K   +D+ARK+FD + + N ++W SLIS   K+  +DE  R
Sbjct: 43  MTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAAR 102

Query: 111 LFDRMPLKLKNVVSWTTVVLGCA-HNGLIAKLEVI----------------SWTTMCTGL 153
           LF  MP    +  SW ++V G A H+     LE                  S  + C GL
Sbjct: 103 LFGSMPEP--DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGL 160

Query: 154 -ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
            + N  T++         + D+   +A+I  Y   G++A A E+F+ M +RN+ TWN++I
Sbjct: 161 MDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLI 220

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLG-F 268
             Y +NGP   A+++   M  S   P+E T  S++++C  +    E +  HA  ++   F
Sbjct: 221 TCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKF 280

Query: 269 EQE-------TSLTYKCT----CHYVF---------------WDWGFQLDVNSARLAFER 302
             +         +  KC+       VF                 +     V +AR  F +
Sbjct: 281 RDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSK 340

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  ++VVSW A+I  Y+ +G   +  RLF  + +    P   TF  +LS C++   +  G
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLG 400

Query: 363 RKTF-NLMSRAYGFKPRAEH----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           R+   +++ + + F+  AE      + L D+  + G +++  RV  KM   ERD V   A
Sbjct: 401 RQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK--ERDCVSWNA 458

Query: 418 LL 419
           ++
Sbjct: 459 II 460



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 33/243 (13%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S +     VK A  +F +M+Q + VS  ++I  + +N +  +A  LFR +         
Sbjct: 322 VSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTH 381

Query: 56  ---RNIVAESA----MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEG 108
               N+++  A    ++ G      V +    F    E +++   SLI  Y K   +++G
Sbjct: 382 YTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDG 441

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMC-------------TGLE 154
            R+F++M  K ++ VSW  +++G A NG  A+ L++     +C                 
Sbjct: 442 SRVFEKM--KERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS 499

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----AGNMAQASELFNLMP-QRNVWTWN 209
              + +  R YF  M    ++      T  VD    AG + +A  L   MP   +   W 
Sbjct: 500 HAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWG 559

Query: 210 AMI 212
           +++
Sbjct: 560 SLL 562


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 239/434 (55%), Gaps = 34/434 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++ID Y K G +  ARKVFDE+ E NV SWT++I+GY     + E R+LFD MP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            K  N VSW  ++ G    G +                     + AR+ F +MP++++V+
Sbjct: 217 EK--NAVSWNAIISGYVKCGDL---------------------RSARKMFDEMPHRNVVS 253

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +  MI  Y  +G+MA A  +F   P+R+V  W+A+I  Y +NG    A+K+   M     
Sbjct: 254 FTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNV 313

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL-TYKCTCHYVFWDWGFQL-DVN 294
            P+E    S++++C  M    LA  +     + +++S+  ++        D   +   ++
Sbjct: 314 KPDEFIMVSLMSACSQMGSLELAKWVD---DYVRKSSIDVHRAHVIAALIDMNAKCGSMD 370

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   FE +  +D++S+ +M+   S HG G Q   LF+RML  G  PD++ F  +L+ CS
Sbjct: 371 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 430

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDH 412
            AGLV++G   F  M   Y   P  +HY+C+ D+L RAG++KEA  ++  MP  PH    
Sbjct: 431 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAG-- 488

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
              GALLGAC+LH D+ + + + ++L EL+P ++G YVL +N++AA  +W + + +R KM
Sbjct: 489 -AWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKM 547

Query: 473 -ERRVKKVASFSQI 485
            ER ++K+   S I
Sbjct: 548 RERGIRKIPGCSWI 561



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 27/268 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++  A K+FDEM + + VS  +MI  +    DL +A  LF  MPE  +N V+ +A
Sbjct: 168 YGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE--KNAVSWNA 225

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I GYVK G +  ARK+FDE+   NV S+T++I GY K+  +   R +F+  P   ++VV
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAP--ERDVV 283

Query: 124 SWTTVVLG-----------------CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166
           +W+ ++ G                 C+ N    +  ++S  + C+ +    + K   +Y 
Sbjct: 284 AWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYV 343

Query: 167 ----VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
               + +    ++A  A+I      G+M +A++LF  MP+R++ ++ +M+   + +G   
Sbjct: 344 RKSSIDVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGP 401

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A+ L + M      P++   T ILT+C
Sbjct: 402 QAVSLFSRMLNEGLTPDDVAFTVILTAC 429



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 137/320 (42%), Gaps = 42/320 (13%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N +  + +FN +   +   WN  I  Y+ N      + L   M +S  +P++ T  S++ 
Sbjct: 72  NFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIK 131

Query: 249 SCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C    G+ E +  H  A+R G   +  +       Y     G   ++  AR  F+ +  
Sbjct: 132 ACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY-----GKCGEILCARKVFDEMGE 186

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++VVSWTAMI  Y++     +  +LF  M     + + +++  ++S     G +   RK 
Sbjct: 187 RNVVSWTAMIAGYASFSDLVEARKLFDEM----PEKNAVSWNAIISGYVKCGDLRSARKM 242

Query: 366 FNLM----------------------SRAYGFKPRAEH----YSCLADILRRAGQVKEAM 399
           F+ M                      S  + F+   E     +S L     + GQ  EA+
Sbjct: 243 FDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAV 302

Query: 400 RVVSKMPPH--ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA--NV 455
           ++  +M     + D  ++ +L+ AC   G + +A ++ + + +       A+V++A  ++
Sbjct: 303 KIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDM 362

Query: 456 HAARGEWDEFAQVRKKMERR 475
           +A  G  D   ++ ++M +R
Sbjct: 363 NAKCGSMDRATKLFEEMPKR 382


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 262/518 (50%), Gaps = 48/518 (9%)

Query: 8   GKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVA 60
           GK +EA +L+ +M      QPD  +  +++T+     +  +   +   +  +   +NI+ 
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
           E+ ++  Y + GR++ A+++F+ + E N YSW S+I GY +  +  E  RLF +M L   
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 119 LKNVVSWTTVVLGCA-----------HNGLIAKL---EVISWTTMCTGLERNAMTKLARE 164
             +  S ++++  C            HN ++      E I    +     +      A +
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWK 636

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            + Q   KD++  N M++A+V++G    A  LF+ M QRN   WN+++  YA  G +  +
Sbjct: 637 VYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKES 696

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGM--LENM-LAHALAIRLGFEQ-----ETSLT- 275
                 M +S    +  T  +I+  C  +  LE+    H+L I+ GF       ET+L  
Sbjct: 697 FNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVD 756

Query: 276 --YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
              KC              +  AR  F+ +  K++VSW AMI  YS HG   +   L+  
Sbjct: 757 MYSKCGA------------ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 804

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M K G  P+E+TF+ +LS CSH GLVE+G + F  M   Y  + +AEHY+C+ D+L RAG
Sbjct: 805 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 864

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           ++++A   V KMP  E +    GALLGACR+H D+ M     +RL EL P + G YV+ +
Sbjct: 865 RLEDAKEFVEKMPI-EPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMS 923

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           N++AA G W E   +R+ M+ + VKK    S IE+  +
Sbjct: 924 NIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSE 961



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/480 (22%), Positives = 198/480 (41%), Gaps = 86/480 (17%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-------------------- 54
           K+FDEM + + V+  S+I+   +      A  LF  M ES                    
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 55  -----------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLIS 97
                              +I+  SA++D Y K G V+EA +VF  + E N  S+ +L++
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 98  GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA-KLEVISWTTMCTGLERN 156
           GY +  + +E   L+  M                 + +G+   +    +  T+C     +
Sbjct: 452 GYVQEGKAEEALELYHDMQ----------------SEDGIQPDQFTFTTLLTLCANQRND 495

Query: 157 AMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
              +    + ++    K+I+    ++  Y + G +  A E+FN M +RN ++WN+MI+ Y
Sbjct: 496 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 555

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET 272
            +NG    A++L   M  +   P+  + +S+L+SC  + ++      H   +R   E+E 
Sbjct: 556 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 615

Query: 273 SLTY-------KCTCHYVFW---DWGFQLDV----------------NSARLAFERLEAK 306
            L         KC      W   D   + DV                N A+  F+++E +
Sbjct: 616 ILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQR 675

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +   W +++  Y+N G   + F  F  ML+S  + D +T V +++ CS    +E G +  
Sbjct: 676 NTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLH 735

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +L+ +           + L D+  + G + +A  V   M  + ++ V   A++     HG
Sbjct: 736 SLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNM--NGKNIVSWNAMISGYSKHG 793



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 195/457 (42%), Gaps = 45/457 (9%)

Query: 11  KEATKLFDEMSQ----PDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRNIVAESAM 64
           +EA  +FD M +    PD  + AS + V   LR+ D  K           + +    +A+
Sbjct: 258 EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNAL 317

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           ID Y K    +   KVFDE+ E N  +W S+IS   +    ++   LF RM       N 
Sbjct: 318 IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNR 377

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            +  ++++  A    I K              R     L R     + N DI+  +A++ 
Sbjct: 378 FNLGSILMASAGLADIGK-------------GRELHGHLVR----NLLNSDIILGSALVD 420

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSRFMPNET 241
            Y   G + +A ++F  + +RN  ++NA++  Y + G    A++L  ++  +    P++ 
Sbjct: 421 MYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQF 480

Query: 242 TCTSILTSCEGMLENMLA---HALAIRLGFEQ----ETSLTYKCTCHYVFWDWGFQLDVN 294
           T T++LT C     +      HA  IR    +    ET L       +++ + G    +N
Sbjct: 481 TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELV------HMYSECG---RLN 531

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A+  F R+  ++  SW +MI  Y  +G   +  RLF +M  +G KPD  +   +LS C 
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE--RDH 412
                +KGR+  N + R    +        L D+  + G +  A +V  +    +   ++
Sbjct: 592 SLSDSQKGRELHNFIVRN-TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNN 650

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
           V++ A + + R +    + D + +R   L  S    Y
Sbjct: 651 VMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGY 687



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 168/411 (40%), Gaps = 35/411 (8%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMIDGYVKAGRVDE-- 76
           S  +P+  +S+I   + ++   + +++   M  +  N  A   + ++  Y ++G +D+  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 77  -ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCA 133
            ARK+F+E+ E N+ +W ++I  Y +     E  RL+ RM       +  ++ +V+  C 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
               +  +  +  + +  GL                 N ++    A++  Y   G M  A
Sbjct: 187 AMEDMGGVRQLQSSVVKAGL-----------------NCNLFVGGALVDGYARFGWMDDA 229

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
               + +   +V TWNA+I  Y +      A  + + M +    P+  T  S L  C  +
Sbjct: 230 VTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 289

Query: 254 LE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                    H+  I  GF+ +T +       Y   D     D  S    F+ +  ++ V+
Sbjct: 290 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCD-----DEESCLKVFDEMGERNQVT 344

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W ++I A +  GH      LF RM +SG K +      +L   +    + KGR+    + 
Sbjct: 345 WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           R           S L D+  + G V+EA +V   +   ER+ V   ALL  
Sbjct: 405 RNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSLL--ERNEVSYNALLAG 452


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 255/474 (53%), Gaps = 36/474 (7%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           +L  A  +F  MPE  R++++ ++MI  Y+  G +  A  + D++ E N+ +W S++ G 
Sbjct: 125 NLGSAYRVFEEMPE--RDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGL 182

Query: 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159
            KA  ++    +F++MPL+ +                       +SW +M +G  R    
Sbjct: 183 SKAGNMELAHSVFEQMPLRNE-----------------------VSWNSMISGYVRIGDV 219

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           + A+  F QMP K +V+W AMI+ Y   G++  A  +FN MP +NV +WNAMI  Y  N 
Sbjct: 220 RAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNH 279

Query: 220 PEGAAMKLLN-LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC 278
               A+ + + ++      P++TT  SIL++C  +    L H   I   + ++  L    
Sbjct: 280 EFDQALCVFHHMLINGECRPDQTTLISILSACAHL--GSLEHGKWIN-SYIKKNKLHLSI 336

Query: 279 TCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
                  D   +  DV +A+  F  +  + +++WT M+   + +G   +   LF +M   
Sbjct: 337 PLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLE 396

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           GTKPD++ F+ VLS C+H GLVE+G++ F+ M + +G KPR EHY C+ D+L RAG+++E
Sbjct: 397 GTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEE 456

Query: 398 AMRVVSKMPPHERDHVVLGA-LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           A+R  ++M  H + + V+ A LL  C++HG+  +   + E++++ +PS+     L +N+ 
Sbjct: 457 AVRFTARM--HLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLS 514

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           A+ G W++    R  M ++R++KV   S I+V  + H  LA  ++  +V  KE+
Sbjct: 515 ASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLA--KDTRHVQRKEI 566



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 169/381 (44%), Gaps = 46/381 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G+++ A  L D+M + + V+  S++    +  ++  A ++F  MP   RN V+ 
Sbjct: 149 SAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMP--LRNEVSW 206

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++MI GYV+ G V  A+ +F ++ E  V SWT++ISGY     +     +F+ MP  +KN
Sbjct: 207 NSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMP--VKN 264

Query: 122 VVSWTTVVLGCAHNG------------LIA------KLEVISWTTMCTGLERNAMTKLAR 163
           VVSW  ++ G  HN             LI       +  +IS  + C  L      K   
Sbjct: 265 VVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWIN 324

Query: 164 EYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            Y  +  NK    I   NA+I  +   G++  A E+F+ M +R + TW  M+   A NG 
Sbjct: 325 SYIKK--NKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGK 382

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE------NMLAHALAIRLGFEQET 272
              A+ L + M      P++    ++L++C   G++E      + +     I+   E   
Sbjct: 383 CREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEH-- 440

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLF 331
              Y C    +    G    +  A     R+  K + V W  ++     HG+G  +  + 
Sbjct: 441 ---YGCMVDLL----GRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVT 493

Query: 332 ARML-KSGTKPDEITFVGVLS 351
            +++ +  + P  +T V  LS
Sbjct: 494 EKIMDQEPSNPSYLTLVSNLS 514


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 228/448 (50%), Gaps = 48/448 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +++ID Y + G V+ A KVF  + E +V SW S++ G  K   +D   ++FD MP
Sbjct: 158 DIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP 217

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       + +SW TM  G  +      A + F +M  +DIV+
Sbjct: 218 ER-----------------------DRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVS 254

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W+ M+  Y   G+M  A  LF+  P +N+  W  +I  YA  G    AM L + M +S  
Sbjct: 255 WSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGL 314

Query: 237 MPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWD 286
             ++    SIL +C   GML      H   +R  F   T        +  KC C      
Sbjct: 315 RLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGC------ 368

Query: 287 WGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 V+ A   F  ++  KD+VSW +MI  +  HGHG +   LF  M++ G KPD  T
Sbjct: 369 ------VDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYT 422

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+G+L  C+HAGLV +GR  F  M R YG  P+ EHY C+ D+L R G +KEA  +V  M
Sbjct: 423 FIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSM 482

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            P E + ++LG LLGACR+H DV++A  + + L +L PS  G + L +N++A  G+W   
Sbjct: 483 -PFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINV 541

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           A+VRK+M +   +K +  S IEV+ + H
Sbjct: 542 AKVRKQMNDEGGQKPSGVSSIEVEEEVH 569



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 35/268 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V+ A K+F  M + D VS  SM+   ++N DL  A  +F  MPE  R  V+ + M+DG
Sbjct: 173 GDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDR--VSWNTMLDG 230

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + KAG +D+A K+F+ + E ++ SW++++ GY K   +D  R LFDR P  +KN+V WTT
Sbjct: 231 FTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCP--VKNLVLWTT 288

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK--------------- 172
           ++ G A  G     +V     +C  +E++ + +L   +F+ +                  
Sbjct: 289 IISGYAEKG-----QVKEAMNLCDEMEKSGL-RLDDGFFISILAACAESGMLGLGKKMHD 342

Query: 173 ---------DIVAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYARNGPEG 222
                         N+ I  Y   G +  A  +FN M  ++++ +WN+MI  +  +G   
Sbjct: 343 SFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGE 402

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +++L N M +  F P+  T   +L +C
Sbjct: 403 KSIELFNTMVREGFKPDRYTFIGLLCAC 430


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 175/540 (32%), Positives = 263/540 (48%), Gaps = 67/540 (12%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMI 65
           EA K ++ M     +PD V+  S++  F     L   + +   + E+   +     ++++
Sbjct: 131 EAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLV 190

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVV 123
             Y K G + +AR +FD + E NV +WT LI+GY +  QVD    L + M       N +
Sbjct: 191 GMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI 250

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
           ++ +++ GC               T    LE     K    Y +Q    +++   N++IT
Sbjct: 251 TFASILQGC---------------TTPAALEHG---KKVHRYIIQSGYGRELWVVNSLIT 292

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G + +A +LF+ +P R+V TW AM+  YA+ G    A+ L   M Q    P++ T
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352

Query: 243 CTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            TS+LTSC     + E    H   +  G+  +  L       Y          ++ A L 
Sbjct: 353 FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCG-----SMDDASLV 407

Query: 300 FERLEAKDVVSWTAMILAY-SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           F ++  ++VV+WTA+I    + HG   +    F +M K G KPD++TF  VLS C+H GL
Sbjct: 408 FNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGL 467

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLG 416
           VE+GRK F  M   YG KP  EHYSC  D+L RAG ++EA  V+  MP  P      V G
Sbjct: 468 VEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPS---VWG 524

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL ACR+H DV   +   E +++L P   GAYV  ++++AA G +++  +VR+ ME+R 
Sbjct: 525 ALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRD 584

Query: 476 VKKVASFSQIEVKGKDHT--------------------LLAPMREMGYV-----VLKEVD 510
           V K    S IEV GK H                     L   ++EMGYV     VL +VD
Sbjct: 585 VVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVD 644



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 202/444 (45%), Gaps = 51/444 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFL----RNHDLPKAEALFRAMPES--QRNIVA 60
           TG++KEA  + + M        + +    L    R   L +   +  A+ +S  Q N   
Sbjct: 25  TGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYL 84

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           E+ ++  Y K G + +AR+VFD I + N+ SWT++I  +    +  E  + ++ M L   
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLA-- 142

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV----A 176
                     GC       K + +++ ++        + +L ++  +++    +      
Sbjct: 143 ----------GC-------KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             +++  Y   G++++A  +F+ +P++NV TW  +I  YA+ G    A++LL  M Q+  
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVFWDWG 288
            PN+ T  SIL  C     +      H   I+ G+ +E     + +T  C C        
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCG------- 298

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  AR  F  L  +DVV+WTAM+  Y+  G   +   LF RM + G KPD++TF  
Sbjct: 299 ---GLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTS 355

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VL+ CS    +++G++    +  A G+       S L  +  + G + +A  V ++M   
Sbjct: 356 VLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-- 412

Query: 409 ERDHVVLGALL-GACRLHGDVRMA 431
           ER+ V   A++ G C  HG  R A
Sbjct: 413 ERNVVAWTAIITGCCAQHGRCREA 436


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 236/448 (52%), Gaps = 27/448 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  +S+++  Y ++G       VF E+   N+ SWT++I+GY + R   EG  +F  M 
Sbjct: 162 DVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREM- 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV 175
                      V  G   N +     ++S    C GLE   + KL   Y +++  + D+ 
Sbjct: 221 -----------VGSGTQPNAVT----LVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVS 265

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA+I  Y   GN+  A  LF+ M  +N+ +WNAMI  Y +N     A+KL   M   +
Sbjct: 266 LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK 325

Query: 236 FMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +  T  S++++C   G L      H L  R G E   S+T      Y         +
Sbjct: 326 VDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCG-----N 380

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ AR  FERL  + VVSWT+MI A ++HGHG    +LF+RM   G KP+  TF  V + 
Sbjct: 381 IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTA 440

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C H+GLVE+GRK F  M R Y   P  EH +C+ D+L RAG + EA   + KMP  E D 
Sbjct: 441 CRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV-EPDV 499

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V GALLG+CR+H ++ +A+ + E+L  L P +   YVL +N++A  G W++ A++RK M
Sbjct: 500 SVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLM 559

Query: 473 -ERRVKKVASFSQIEVKGKDHTLLAPMR 499
            ER +KK+   S +EV  + HT L+  R
Sbjct: 560 EERELKKIPGHSLVEVNRRFHTFLSGSR 587



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 170/392 (43%), Gaps = 30/392 (7%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           DL +  AL       Q  +++   +I     A  +D ARK+FD++ + +V+ W +LI GY
Sbjct: 44  DLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGY 103

Query: 100 FKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNA 157
             A   +E   L+  M       +  ++  VV  CA    + + + +    +  G +   
Sbjct: 104 ADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFD--- 160

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
                          D+   ++++  Y  +G       +F  M  RN+ +W A+I  Y +
Sbjct: 161 --------------SDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQ 206

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-LENM--LAHALAIRLGFEQETSL 274
           N      + +   M  S   PN  T  S+L +C G+   N+  L H   I+LG + + SL
Sbjct: 207 NRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSL 266

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           T      Y     G   +V +AR  F+ +  +++VSW AMI AY  +  G    +LF RM
Sbjct: 267 TNALIALY-----GKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRM 321

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
                  D IT V V+S C+  G +  GR    L+ R  G +      + L D+  + G 
Sbjct: 322 QAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRK-GLEINVSITNALIDMYAKCGN 380

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  A  V  ++P   R  V   +++GAC  HG
Sbjct: 381 IDLAREVFERLPC--RSVVSWTSMIGACASHG 410



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 56/249 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           +G  G V+ A  LFD M   + VS  +MI  + +N+    A  LFR M            
Sbjct: 274 YGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITM 333

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       + N+   +A+ID Y K G +D AR+VF+ +  
Sbjct: 334 VSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPC 393

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +V SWTS+I         ++  +LF RM  +    N  ++  V   C H+GL+ +    
Sbjct: 394 RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEE---- 449

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QR 203
                     R     + R+Y + MP  +  A   M+     AG++ +A E  + MP + 
Sbjct: 450 ---------GRKHFESMMRDYSI-MPGVEHCA--CMVDLLGRAGSLMEAYEFIDKMPVEP 497

Query: 204 NVWTWNAMI 212
           +V  W A++
Sbjct: 498 DVSVWGALL 506


>gi|326519006|dbj|BAJ92663.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 547

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 207/368 (56%), Gaps = 20/368 (5%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +V EA +LFD M   D VS  +M+  + R   + +A  LF AMP   R+ V+ + M+ GY
Sbjct: 137 RVDEARRLFDAMPVRDVVSWTAMLQGYARIGMMREARGLFDAMPA--RDFVSWTVMLQGY 194

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            + G + EAR+VFD++ E NV +WT ++  Y       E   LF++MP +  N+ SW  +
Sbjct: 195 ARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAMELFNKMPQR--NLHSWNIM 252

Query: 129 VLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAW 177
           + GC   G + +             +SWTTM TGL +N    +ARE+F  MP N+D  AW
Sbjct: 253 ISGCLRAGNVDEAVRLFERMPDRNAVSWTTMVTGLAQNGRVSMAREFFDGMPENRDTAAW 312

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           NAMITAY + G M +A  LF+ +P +++ +WNA+I  YA+N  +G  M L  LM +S   
Sbjct: 313 NAMITAYANDGQMNEAQRLFDSIPAKDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVS 372

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           P+ TT  S+L + E  +E    H LA   G   +TSL       Y         D++SA 
Sbjct: 373 PDRTTLISVLVTSESTVEVGQIHGLATTRGLLSDTSLGNALLTMY-----SRSGDLHSAW 427

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ ++ KD ++WT+M+ A++NHG      + FA+ML+ G KP   TF+  LS CSHAG
Sbjct: 428 QVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACSHAG 487

Query: 358 LVEKGRKT 365
           LV+KGR +
Sbjct: 488 LVDKGRAS 495



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 238/456 (52%), Gaps = 30/456 (6%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           +FD     D V+ A++I + LR  DLP+AEALF A P + R +  ++AM+DGY KAGRVD
Sbjct: 49  VFDGTPHEDAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTAMLDGYFKAGRVD 108

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
            AR++FD +   +V +WT ++SGY +AR+VDE RRLFD MP  +++VVSWT ++ G A  
Sbjct: 109 HARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMP--VRDVVSWTAMLQGYARI 166

Query: 136 GLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
           G++ +           + +SWT M  G  R  M + ARE F QMP +++V W  M+ AY 
Sbjct: 167 GMMREARGLFDAMPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYA 226

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           D G+  +A ELFN MPQRN+ +WN MI    R G    A++L   M       N  + T+
Sbjct: 227 DQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMPDR----NAVSWTT 282

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           ++T   G+ +N        R  F+           + +   +     +N A+  F+ + A
Sbjct: 283 MVT---GLAQN--GRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPA 337

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           KD+VSW A+I  Y+ + H  +V  LF  ML+S   PD  T + VL   +    VE G+  
Sbjct: 338 KDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVL--VTSESTVEVGQ-- 393

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
            + ++   G        + L  +  R+G +  A +V   +   E+D +   +++ A   H
Sbjct: 394 IHGLATTRGLLSDTSLGNALLTMYSRSGDLHSAWQVFKMI--QEKDPITWTSMMRAFANH 451

Query: 426 GDVRMADYIGERLIE--LQPSSSG-AYVLSANVHAA 458
           G    A     ++++   +PSS+     LSA  HA 
Sbjct: 452 GRASYALQAFAQMLQHGYKPSSTTFIAALSACSHAG 487



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 41/259 (15%)

Query: 5   GC--TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           GC   G V EA +LF+ M   + VS  +M+T   +N  +  A   F  MPE+ R+  A +
Sbjct: 255 GCLRAGNVDEAVRLFERMPDRNAVSWTTMVTGLAQNGRVSMAREFFDGMPEN-RDTAAWN 313

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---------- 112
           AMI  Y   G+++EA+++FD I   ++ SW ++I GY K +   E   LF          
Sbjct: 314 AMITAYANDGQMNEAQRLFDSIPAKDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSP 373

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           DR  L    V S +TV +G  H GL     ++S T++                       
Sbjct: 374 DRTTLISVLVTSESTVEVGQIH-GLATTRGLLSDTSLG---------------------- 410

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                NA++T Y  +G++  A ++F ++ +++  TW +M+  +A +G    A++    M 
Sbjct: 411 -----NALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQML 465

Query: 233 QSRFMPNETTCTSILTSCE 251
           Q  + P+ TT  + L++C 
Sbjct: 466 QHGYKPSSTTFIAALSACS 484


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 255/500 (51%), Gaps = 34/500 (6%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARK 79
           +PD  +   ++  F RN  L   + L     +     N+  + A I  +     VD ARK
Sbjct: 104 KPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARK 163

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH--- 134
           VFD      V +W  ++SGY + +Q  + + LF  M  +    N V+   ++  C+    
Sbjct: 164 VFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKD 223

Query: 135 -----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                      NG I +  +I    +            A+  F  M N+D+++W +++T 
Sbjct: 224 LEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTG 283

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           + + G +  A + F+ +P+R+  +W AMID Y R      A+ L   M  S   P+E T 
Sbjct: 284 FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343

Query: 244 TSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQL-DVNSAR 297
            SILT+C        AH  A+ LG     +  + S+           D  F+  +V  A+
Sbjct: 344 VSILTAC--------AHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAK 395

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ +  KD  +WTAMI+  + +GHG +   +F+ M+++   PDEIT++GVL  C+HAG
Sbjct: 396 KVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAG 455

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           +VEKG+  F  M+  +G KP   HY C+ D+L RAG+++EA  V+  MP  + + +V G+
Sbjct: 456 MVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPV-KPNSIVWGS 514

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRV 476
           LLGACR+H +V++A+   ++++EL+P +   YVL  N++AA   W+   QVRK  MER +
Sbjct: 515 LLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGI 574

Query: 477 KKVASFSQIEVKGKDHTLLA 496
           KK    S +E+ G  +  +A
Sbjct: 575 KKTPGCSLMELNGNVYEFVA 594



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 50/254 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F   G++ EA  +FD M   D +S  S++T F     +  A   F  +PE  R+ V+ +A
Sbjct: 253 FAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE--RDYVSWTA 310

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MIDGY++  R  EA  +F E+   NV              + DE                
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNV--------------KPDE---------------F 341

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +  +++  CAH G    LE+  W    T +++N++              D    NA+I  
Sbjct: 342 TMVSILTACAHLG---ALELGEWVK--TYIDKNSI------------KNDTFVGNALIDM 384

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   GN+ +A ++F  M  ++ +TW AMI   A NG    A+ + + M ++   P+E T 
Sbjct: 385 YFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITY 444

Query: 244 TSILTSCE--GMLE 255
             +L +C   GM+E
Sbjct: 445 IGVLCACTHAGMVE 458



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 31/267 (11%)

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-NGPE-GAAMKLLNLMFQSRFMPNETTC 243
           ++G M  A ++F+ +PQ  ++ WN MI  Y+R N P+ G +M L  LM  S   P+  T 
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYL--LMLASNIKPDRFTF 110

Query: 244 TSILTSCEGMLENM--------LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             +L   +G   NM        L H  A++ GF+       K   H     +     V+ 
Sbjct: 111 PFLL---KGFTRNMALQYGKVLLNH--AVKHGFDSNL-FVQKAFIHM----FSLCRLVDL 160

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           AR  F+  +A +VV+W  M+  Y+      +   LF  M K G  P+ +T V +LS CS 
Sbjct: 161 ARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSK 220

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
              +E G+  +  ++   G   R     + L D+    G++ EA  V   M    RD + 
Sbjct: 221 LKDLEGGKHIYKYING--GIVERNLILENVLIDMFAACGEMDEAQSVFDNMK--NRDVIS 276

Query: 415 LGALLGACRLHGDVRMA----DYIGER 437
             +++      G + +A    D I ER
Sbjct: 277 WTSIVTGFANIGQIDLARKYFDQIPER 303


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 251/493 (50%), Gaps = 33/493 (6%)

Query: 13  ATKLFDEM--SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           A KLFDE    + D  +  ++I  ++RN DL  A  L   M  +    VA +AMI GYV 
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGM--TDHIAVAWNAMISGYVH 251

Query: 71  AGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            G  +EA  +   ++   +    Y++TS+IS    A   + GR++         +     
Sbjct: 252 RGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQV---------HAYVLR 302

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
           TVV    H  L     +I+  T C  L        AR  F +MP KD+V+WNA+++  V+
Sbjct: 303 TVVQPSGHFVLSVNNALITLYTRCGKLVE------ARRVFDKMPVKDLVSWNAILSGCVN 356

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           A  + +A+ +F  MP R++ TW  MI   A+NG     +KL N M      P +      
Sbjct: 357 ARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGA 416

Query: 247 LTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           + SC   G L+N    H+  I+LG   ++SL+       ++   G    V +A   F  +
Sbjct: 417 IASCSVLGSLDNGQQLHSQIIQLG--HDSSLSVGNALITMYSRCGL---VEAADTVFLTM 471

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
              D VSW AMI A + HGHG Q  +L+ +MLK    PD ITF+ +LS CSHAGLV++GR
Sbjct: 472 PYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGR 531

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
             F+ M   YG  P  +HYS L D+L RAG   EA  V   M P E    +  ALL  C 
Sbjct: 532 HYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESM-PFEPGAPIWEALLAGCW 590

Query: 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASF 482
           +HG++ +     +RL+EL P   G Y+  +N++AA G+WDE A+VRK M ER VKK    
Sbjct: 591 IHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGC 650

Query: 483 SQIEVKGKDHTLL 495
           S IEV+   H  L
Sbjct: 651 SWIEVENMVHVFL 663



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 187/492 (38%), Gaps = 100/492 (20%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K+  +  AR +FD+I + ++ + T+++S Y  A  +    +LF+  P+ +++ V
Sbjct: 37  LIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTV 96

Query: 124 SWTTVVLGCAHN--------------------------------GLIA---------KLE 142
           S+  ++   +H+                                 LIA           E
Sbjct: 97  SYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCE 156

Query: 143 VISWTTMCTGLERNAMTKL------------------AREYFVQMP--NKDIVAWNAMIT 182
           V  W  +      NA+                     AR+ F + P   +D  AW  +I 
Sbjct: 157 VFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIA 216

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            YV   ++  A EL   M       WNAMI  Y   G    A  LL  M       +E T
Sbjct: 217 GYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYT 276

Query: 243 CTSILTSCEGM-LENM--LAHALAIRLGFEQE-----------TSLTYKC---------- 278
            TS++++     L N+    HA  +R   +              +L  +C          
Sbjct: 277 YTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVF 336

Query: 279 ----TCHYVFWDWGFQLDVNSARL-----AFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
                   V W+      VN+ R+      F  +  + +++WT MI   + +G G +  +
Sbjct: 337 DKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLK 396

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF +M   G +P +  + G ++ CS  G ++ G++  + + +  G        + L  + 
Sbjct: 397 LFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQ-LGHDSSLSVGNALITMY 455

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE---LQPSSS 446
            R G V+ A  V   MP    D V   A++ A   HG    A  + E++++   L    +
Sbjct: 456 SRCGLVEAADTVFLTMP--YVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRIT 513

Query: 447 GAYVLSANVHAA 458
              +LSA  HA 
Sbjct: 514 FLTILSACSHAG 525



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 25/202 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+ EA ++FD+M   D VS  ++++  +    + +A ++FR MP   R+++  + MI G
Sbjct: 327 GKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMP--VRSLLTWTVMISG 384

Query: 68  YVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
             + G  +E  K+F+++     E   Y++   I+       +D G++L  ++ ++L +  
Sbjct: 385 LAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQI-IQLGHDS 443

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           S +        N LI            T   R  + + A   F+ MP  D V+WNAMI A
Sbjct: 444 SLSV------GNALI------------TMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAA 485

Query: 184 YVDAGNMAQASELFNLMPQRNV 205
               G+  QA +L+  M + ++
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDI 507


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 225/453 (49%), Gaps = 54/453 (11%)

Query: 48  FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           FRA P         + +ID Y   G +  A +VF E+ E NV +WT++I+GY     +  
Sbjct: 82  FRANP------FVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVT 135

Query: 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
            RRLFD  P +                       +++ W TM +G         ARE F 
Sbjct: 136 ARRLFDLAPER-----------------------DIVLWNTMISGYIEAKDVIRARELFD 172

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +MPNKD+++WN ++  Y   G++     LF  MP+RNV++WNA+I  Y RNG     +  
Sbjct: 173 KMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSA 232

Query: 228 LNLMF-QSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQET-------SLTY 276
              M      +PN+ T  ++L++C   G L+     H  A   G++           +  
Sbjct: 233 FKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYA 292

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           KC              V +A   F+ ++ KD++SW  +I   + HGHG     LF+ M  
Sbjct: 293 KCGV------------VETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKI 340

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G  PD ITF+G+L  C+H GLVE G   F  M+  Y   PR EHY C+ D+L RAG + 
Sbjct: 341 AGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLA 400

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
            A+  + KMP  E D V+  ALLGACR++ +V +A+   E+LIE +P +   YV+ +N++
Sbjct: 401 HAVDFIRKMPI-EADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIY 459

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
              G W + A+++  M +   KK+   S IEV 
Sbjct: 460 GDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVN 492



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V    +LF+EM + +  S  ++I  + RN    +  + F+ M      +  ++ 
Sbjct: 189 YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDAT 248

Query: 64  MID---GYVKAGRVDEAR--KVFDEI--YEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +++      + G +D  +   V+ E   Y+GNVY   +L+  Y K   V+    +F  M 
Sbjct: 249 LVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSM- 307

Query: 117 LKLKNVVSWTTVVLGCAHNG 136
              K+++SW T++ G A +G
Sbjct: 308 -DNKDLISWNTIIGGLAVHG 326


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 262/538 (48%), Gaps = 82/538 (15%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++EA KLFDEM   D  S  +MI+ + +N  + +A  LF  MPE  RN V+ SAMI G+ 
Sbjct: 121 LEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPE--RNAVSWSAMITGFC 178

Query: 70  KAGRVDEARKVFDEI-------------------------------------YEGNVYSW 92
           + G VD A  +F ++                                      E  VY++
Sbjct: 179 QNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAY 238

Query: 93  TSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVVSWTTVVLGCAHNGLI- 138
            +LI GY +  QV+  R LFD++P                KNVVSW +++      G + 
Sbjct: 239 NTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVV 298

Query: 139 -AKL--------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
            A+L        + ISW TM  G    +  + A   F +MPN+D  +WN M++ Y   GN
Sbjct: 299 SARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGN 358

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A   F   P+++  +WN++I  Y +N     A+ L   M      P+  T TS+L++
Sbjct: 359 VELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSA 418

Query: 250 CEGMLE---NMLAHALAIRLGFE----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
             G++     M  H + ++            +T    C           ++  +R  F+ 
Sbjct: 419 STGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG----------EIMESRRIFDE 468

Query: 303 LEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           ++ K +V++W AMI  Y+ HG+  +   LF  M  +G  P  ITFV VL+ C+HAGLV++
Sbjct: 469 MKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDE 528

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            +  F  M   Y  +P+ EHYS L ++    GQ +EAM +++ M P E D  V GALL A
Sbjct: 529 AKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSM-PFEPDKTVWGALLDA 587

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
           CR++ +V +A    E +  L+P SS  YVL  N++A  G WDE +QVR  ME +R+KK
Sbjct: 588 CRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKK 645



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 172/392 (43%), Gaps = 60/392 (15%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           A +  ++  +++G + EAR +F+++   N  +W ++ISGY K R++++ R+LFD MP   
Sbjct: 42  ATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP--K 99

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           ++VV+W T++ G    G I  LE                   AR+ F +MP++D  +WN 
Sbjct: 100 RDVVTWNTMISGYVSCGGIRFLEE------------------ARKLFDEMPSRDSFSWNT 141

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           MI+ Y     + +A  LF  MP+RN  +W+AMI  + +NG   +A+ L       R MP 
Sbjct: 142 MISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLF------RKMPV 195

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVN 294
           + + + +     G+++N      A  LG           L Y      V   +G +  V 
Sbjct: 196 KDS-SPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIV--GYGQRGQVE 252

Query: 295 SARLAFERLE---------------AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           +AR  F+++                 K+VVSW +MI AY   G       LF +M     
Sbjct: 253 AARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQM----K 308

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
             D I++  ++    H   +E     F+ M         A  ++ +       G V+ A 
Sbjct: 309 DRDTISWNTMIDGYVHVSRMEDAFALFSEMP-----NRDAHSWNMMVSGYASVGNVELAR 363

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
               K P  E+  V   +++ A   + D + A
Sbjct: 364 HYFEKTP--EKHTVSWNSIIAAYEKNKDYKEA 393



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 19/245 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G V  A  LFD+M   D +S  +MI  ++    +  A ALF  MP   R+  + + M+ 
Sbjct: 294 VGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMP--NRDAHSWNMMVS 351

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY   G V+ AR  F++  E +  SW S+I+ Y K +   E   LF RM ++ +     T
Sbjct: 352 GYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHT 411

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
              L  A  GL+          +  G++ + +        V+    D+   NA+IT Y  
Sbjct: 412 LTSLLSASTGLV---------NLRLGMQMHQIV-------VKTVIPDVPVHNALITMYSR 455

Query: 187 AGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
            G + ++  +F+ M  +R V TWNAMI  YA +G    A+ L   M  +   P+  T  S
Sbjct: 456 CGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515

Query: 246 ILTSC 250
           +L +C
Sbjct: 516 VLNAC 520


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/527 (29%), Positives = 256/527 (48%), Gaps = 85/527 (16%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMPES-------- 54
           ++  A KLFD++ QP+  +  +M   +L+N        LF        MP          
Sbjct: 59  RIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118

Query: 55  -----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                  + N    +++ID Y K G V++A KVF E++E NV  
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           WT++I+GY     V  GRRLFD  P +                       +V+ W+ + +
Sbjct: 179 WTAIINGYILCGDVVSGRRLFDLAPER-----------------------DVVMWSVLIS 215

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G   +     ARE F +MPN+D ++WNAM+  Y   G +    ++F+ MP+RNV++WN +
Sbjct: 216 GYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGL 275

Query: 212 IDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLG 267
           I  Y +NG     ++    M  +   +PN+ T  ++L++C   G L+     H  A  +G
Sbjct: 276 IGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIG 335

Query: 268 FEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           ++           +  KC              + +A + F  L+ KD++SW  +I   + 
Sbjct: 336 YKGNLFVGNVLIDMYAKCGV------------IENAVVVFNCLDRKDIISWNTIINGLAI 383

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HGH      +F RM   G +PD +TFVG+LS C+H GLV+ G   F  M   Y   P+ E
Sbjct: 384 HGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIE 443

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY C+ D+L RAG + +A+  + KMP  E D V+  ALLGACRL+ +V +A+   +RLIE
Sbjct: 444 HYGCMVDLLGRAGLLDQALNFIRKMPI-EPDAVIWAALLGACRLYKNVEIAELALQRLIE 502

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           L+P++   +V+ +N++   G  ++ A+++  M +   +K+   S IE
Sbjct: 503 LEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIE 549



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 26/271 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S+ GC   V++A K+F EM + + V   ++I  ++   D+     LF   PE  R++V  
Sbjct: 156 SKKGC---VEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPE--RDVVMW 210

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I GY+++  +  AR++FD++   +  SW ++++GY    +V+   ++FD MP   +N
Sbjct: 211 SVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP--ERN 268

Query: 122 VVSWTTVVLGCAHNGLIAK------------------LEVISWTTMCTGLERNAMTKLAR 163
           V SW  ++ G   NGL ++                    +++  + C+ L    M K   
Sbjct: 269 VFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVH 328

Query: 164 EYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            Y   +  K ++   N +I  Y   G +  A  +FN + ++++ +WN +I+  A +G   
Sbjct: 329 VYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAP 388

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            A+ + + M      P+  T   IL++C  M
Sbjct: 389 DALGMFDRMKSEGEEPDGVTFVGILSACTHM 419


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/462 (32%), Positives = 242/462 (52%), Gaps = 30/462 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    S ++D Y K   V +A++ FDE+   NV  + ++I+G  + + V+E RRLF+ M 
Sbjct: 174 NAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVM- 232

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAK-LEVI----------------SWTTMCTGLERNAMT 159
              ++ ++WTT+V G   NGL ++ LE+                 S  T C  L      
Sbjct: 233 -TDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQG 291

Query: 160 KLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K    Y ++    D +   +A++  Y    ++  A  +F  M  +N+ +W A+I  Y +N
Sbjct: 292 KQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQN 351

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLT 275
           G    A+++ + M +    P++ T  S+++SC  +    E    H LA+  G      + 
Sbjct: 352 GCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGL-----MH 406

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
           Y    + +   +G    +  A   F+ +   D VSWTA++  Y+  G   +   LF +ML
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKML 466

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
             G KPD +TF+GVLS CS AG VEKGR  F+ M + +G  P  +HY+C+ D+  R+G++
Sbjct: 467 AKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKL 526

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           KEA   + +MP H  D +  G LL ACRL GD+ +  +  E L+E+ P +  +YVL  ++
Sbjct: 527 KEAEEFIKQMPMHP-DAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSM 585

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           HAA+G+W+E AQ+R+ M +R+VKK    S I+ K K H   A
Sbjct: 586 HAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSA 627



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 176/408 (43%), Gaps = 76/408 (18%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y KAGR   AR+VFD +   N++++ +L+S    AR + +   LF  M    +++V
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASM--TQRDIV 104

Query: 124 SWTTVVLGCAHNG--------LIAKLEV--------ISWTTMCT---------------- 151
           S+  V+ G +  G         +A L+         I+ +TM                  
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 152 -----GLERNA--------------MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                G   NA              +   A+  F ++ +K++V +N MIT  +    + +
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-- 250
           A  LF +M  R+  TW  M+  + +NG E  A+++   M       ++ T  SILT+C  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 251 -EGMLENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
              + +    HA  IR  ++           +  KC              +  A   F R
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCR------------SIKLAETVFRR 332

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  K+++SWTA+I+ Y  +G   +  R+F+ M + G  PD+ T   V+S C++   +E+G
Sbjct: 333 MTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEG 392

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
            + F+ ++   G        + L  +  + G +++A R+  +M  H++
Sbjct: 393 AQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 34/269 (12%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           V+EA +LF+ M+  D ++  +M+T F +N    +A  +FR M    + I  +       +
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM--RFQGIAIDQYTFGSIL 279

Query: 70  KA----GRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            A      +++ +++   I    Y+ NV+  ++L+  Y K R +     +F RM    KN
Sbjct: 280 TACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM--TCKN 337

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE-------------VISWTTMCTGLERNAMTKL 161
           ++SWT +++G   NG       + ++++             VIS       LE  A    
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC 397

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                V      I   NA++T Y   G++  A  LF+ M   +  +W A++  YA+ G  
Sbjct: 398 LA--LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRA 455

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              + L   M      P+  T   +L++C
Sbjct: 456 KETIDLFEKMLAKGVKPDGVTFIGVLSAC 484



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G  G +++A +LFDEMS  D VS  ++++ + +     +   LF  M     + + V  
Sbjct: 418 YGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTF 477

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVY-----SWTSLISGYFKARQVDEGRRLFDRMP 116
             ++    +AG V++ R  F  + + +        +T +I  Y ++ ++ E      +MP
Sbjct: 478 IGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMP 537

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           +   + + W T++  C   G    +E+  W
Sbjct: 538 MH-PDAIGWGTLLSACRLRG---DMEIGKW 563


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 245/472 (51%), Gaps = 32/472 (6%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++ ++ +   L  ++ LF  MPE  R++ + + +I GY K G + EA+ +FD++ E + +
Sbjct: 111 LLEMYAKCDSLMDSQKLFDEMPE--RDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV---ISWT 147
           SWT++ISGY +  + +E   LF  M     +  +  TV    A    +  L +   I   
Sbjct: 169 SWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGY 228

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M TGL+                  D V W+A+   Y   G++ +A  +F+ M  R++ T
Sbjct: 229 IMRTGLD-----------------SDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           W AMIDRY ++G       L   + +S   PNE T + +L +C       L    H    
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT 331

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R+GF+   S       H ++   G   ++ SA   F+     D+ SWT++I  Y+ +G  
Sbjct: 332 RVGFD-PFSFAASALVH-MYSKCG---NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQP 386

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  R F  ++KSGT+PD ITFVGVLS C+HAGLV+KG   F+ +   YG    A+HY+C
Sbjct: 387 DEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYAC 446

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L R+GQ  EA  ++SKM   + D  +  +LLG CR+HG++++A    E L E++P 
Sbjct: 447 IIDLLARSGQFDEAENIISKM-SMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE 505

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           +   YV  AN++A  G W E A++RK M+ R V K    S I +K   H  L
Sbjct: 506 NPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFL 557



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 186/446 (41%), Gaps = 98/446 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPESQR---- 56
           S +   G ++EA  LFD+M + D  S  +MI+ ++R HD P +A  LFR M  S      
Sbjct: 144 SGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVR-HDRPNEALELFRMMKRSDNSKSN 202

Query: 57  ----------------------------------NIVAESAMIDGYVKAGRVDEARKVFD 82
                                             + V  SA+ D Y K G ++EAR +FD
Sbjct: 203 KFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFD 262

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-NVVSWTTVVLGCAHNGLIAK 140
           ++ + ++ +WT++I  YF+  +  EG  LF D +   ++ N  +++ V+  CA+      
Sbjct: 263 KMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQ----- 317

Query: 141 LEVISWTTMCTGLERNA-MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
                 T+   G + +  MT++  + F         A +A++  Y   GNM  A  +F  
Sbjct: 318 ------TSEELGKKVHGYMTRVGFDPFS-------FAASALVHMYSKCGNMVSAERVFKE 364

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
            PQ ++++W ++I  YA+NG    A++   L+ +S   P+  T   +L++C        A
Sbjct: 365 TPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSAC--------A 416

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           HA  +  G +   S+  +    +    +   +D+ +    F+  EA++++S  +M     
Sbjct: 417 HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD--EAENIISKMSM----- 469

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
                               KPD+  +  +L  C   G ++  ++    +       P  
Sbjct: 470 --------------------KPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKM 405
             Y  LA+I   AG   E  ++   M
Sbjct: 510 --YVTLANIYATAGMWSEVAKIRKTM 533


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 237/458 (51%), Gaps = 29/458 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----PL 117
           ++++D Y + GRV   R+VF+E+ + +V SW  LISGY K R+ ++   +F RM     L
Sbjct: 171 NSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSL 230

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE---RNAMT---------KLAREY 165
           +       +T+    A   L    E+  +     G      NA+           +ARE 
Sbjct: 231 RPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREI 290

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP K ++ W +M++ YV+ G + +A ELF   P R+V  W AMI+ Y +      A+
Sbjct: 291 FNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAV 350

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY--- 282
            L   M   R  P+  T  ++LT C  +    L     I  G+  E  +           
Sbjct: 351 ALFREMQIKRVSPDRFTLVALLTGCAQL--GTLEQGKWIH-GYIDENKIMIDAVVGTALI 407

Query: 283 -VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
            ++   GF   +  +   F  L+ KD  SWT++I   + +G   +   LFA M+++G KP
Sbjct: 408 EMYAKCGF---IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 464

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITF+GVLS CSH GLVE+GRK F  M+  Y  +P+ EHY CL D+L RAGQ+ EA  +
Sbjct: 465 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 524

Query: 402 VSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
           + K P    + +V   GALL ACR HG+V M + + +RL+ ++   S  + L AN++A+ 
Sbjct: 525 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASA 584

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             W++  +VR+KM +  VKKV   S +EV G  H  L 
Sbjct: 585 DRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLV 622



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 123/254 (48%), Gaps = 24/254 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++ +   L  A  +F  MP   + ++  ++M+ GYV  G++DEAR++F+     +V
Sbjct: 273 ALVDMYCKCGHLSIAREIFNDMP--IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDV 330

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLIAKLEVISWT 147
             WT++I+GY +  + D+   LF  M +K  +   +T V L  GCA  G    LE   W 
Sbjct: 331 VLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLG---TLEQGKWI 387

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                ++ N +              D V   A+I  Y   G + ++ E+FN + +++  +
Sbjct: 388 H--GYIDENKIM------------IDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTAS 433

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIR 265
           W ++I   A NG    A++L   M Q+   P++ T   +L++C   G++E    H  ++ 
Sbjct: 434 WTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMT 493

Query: 266 LGFEQETSLT-YKC 278
             ++ E  L  Y C
Sbjct: 494 AVYQIEPKLEHYGC 507



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 92/224 (41%), Gaps = 37/224 (16%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-NGPEGAAMKLLNLM 231
           D    N+++  Y + G +    ++F  MPQR+V +WN +I  Y +    E A      + 
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ 225

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK---------CTCHY 282
            QS   PNE T  S L++C  +   ML     I     ++   T K         C C +
Sbjct: 226 QQSSLRPNEATVVSTLSACIAL--KMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGH 283

Query: 283 ------VFWD--------W-----GF----QLDVNSARLAFERLEAKDVVSWTAMILAYS 319
                 +F D        W     G+    QLD   AR  FER   +DVV WTAMI  Y 
Sbjct: 284 LSIAREIFNDMPIKTVICWTSMVSGYVNCGQLD--EARELFERSPVRDVVLWTAMINGYV 341

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
                     LF  M      PD  T V +L+ C+  G +E+G+
Sbjct: 342 QFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGK 385



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 11/223 (4%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           GN+  A  +FN +    ++ +N +I  + +NG    A+ L   + +    P+  T   + 
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 248 TS--CEGML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +  C G + E    +   ++ G E +T +     C+ +   +     V + R  FE + 
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYV-----CNSLMDMYAEVGRVQNLRQVFEEMP 194

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
            +DVVSW  +I  Y           +F RM  +S  +P+E T V  LS C    ++E G+
Sbjct: 195 QRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGK 254

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +    +    GF  +  +   L D+  + G +  A  + + MP
Sbjct: 255 EIHRYVREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMP 295



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 11/205 (5%)

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           K L+L   S F   + +C  +L +C+ M          +R GF Q      K        
Sbjct: 20  KPLHLSTSSHF--TKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDP 77

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G   +++ A   F  ++   +  +  +I A++ +G   +   LF ++ + G  PD  T
Sbjct: 78  SIG---NLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFT 134

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +  V       G V +G K +  + ++ G +      + L D+    G+V+   +V  +M
Sbjct: 135 YPFVFKAIGCLGEVREGEKVYGFVVKS-GLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEM 193

Query: 406 PPHERDHVVLGALLGA---CRLHGD 427
           P  +RD V    L+     CR + D
Sbjct: 194 P--QRDVVSWNVLISGYVKCRRYED 216


>gi|242037385|ref|XP_002466087.1| hypothetical protein SORBIDRAFT_01g000980 [Sorghum bicolor]
 gi|241919941|gb|EER93085.1| hypothetical protein SORBIDRAFT_01g000980 [Sorghum bicolor]
          Length = 666

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 258/503 (51%), Gaps = 71/503 (14%)

Query: 36  LRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
           +R  DLP+AEALFRA P + R +  ++ M+ GY KAGRVD AR++FD +   NV +WT++
Sbjct: 128 IRERDLPQAEALFRAAPAAARGLYLDTVMLGGYAKAGRVDRARELFDGMPVKNVVTWTAM 187

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155
           +SGYF+A +V E R LFD MP   +N  SWTTVV G   NG++ +               
Sbjct: 188 VSGYFRAGRVREARELFDVMP--DRNDYSWTTVVQGYTSNGMLME--------------- 230

Query: 156 NAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                 ARE F +MP +++VAW AM+ AYVD+G +  A ELF++MP+RN ++WNAMI  +
Sbjct: 231 ------ARETFDRMPQRNVVAWTAMVKAYVDSGQIQDAWELFDMMPERNSYSWNAMISGF 284

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
              G    A++L   M     + N  + T+++T   G+  N LA+       F     + 
Sbjct: 285 LSIGEVAEAVQLFERMPHR--LRNVVSWTTMVT---GLARNGLAYRAR---EFFDRMPVK 336

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                + +   +     +N A+  F+ + AKD+VSW+ +I AYS +    +   +F  M 
Sbjct: 337 DAAAWNAMITAYANNGQLNEAQRLFDSMLAKDLVSWSTIIEAYSKNERRHEALNMFLLMR 396

Query: 336 KSGTKPDEITFV----------------------GVLSDCSHA-GLVEKGRKTFNLMSRA 372
           +S   P+  T +                      G+LS+ S    L+    ++ +LMS  
Sbjct: 397 RSAVSPNIRTLISILVISESTAEVKQIHGLVITFGLLSETSLGNALLTMYSRSGDLMSAW 456

Query: 373 YGFKPRAE--------------HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
             F+   E              ++ C  D+L R+G V+EA  +V+ M    RD  +L  L
Sbjct: 457 SAFEKLEEKDAITWTSIVQAFANHGC--DLLGRSGYVREAKELVNGMQQGMRDEAILATL 514

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVK 477
           LGAC +H +V +A  +GE LI   PS SG Y L ANV A+ G  DE A V K M   + K
Sbjct: 515 LGACVMHNEVEVAREVGEDLIRFDPSGSGGYRLLANVFASHGMRDETANVWKVMRGSKAK 574

Query: 478 KVASFSQIEVKGKDHTLLAPMRE 500
           +   FSQIEV  ++H   +  +E
Sbjct: 575 RTPGFSQIEVNMRNHVFYSGDQE 597



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 204/401 (50%), Gaps = 38/401 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V+EA +LFD M   +  S  +++  +  N  L +A   F  MP  QRN+VA +AM+  
Sbjct: 195 GRVREARELFDVMPDRNDYSWTTVVQGYTSNGMLMEARETFDRMP--QRNVVAWTAMVKA 252

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV +G++ +A ++FD + E N YSW ++ISG+    +V E  +LF+RMP +L+NVVSWTT
Sbjct: 253 YVDSGQIQDAWELFDMMPERNSYSWNAMISGFLSIGEVAEAVQLFERMPHRLRNVVSWTT 312

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                                M TGL RN +   ARE+F +MP KD  AWNAMITAY + 
Sbjct: 313 ---------------------MVTGLARNGLAYRAREFFDRMPVKDAAAWNAMITAYANN 351

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G + +A  LF+ M  +++ +W+ +I+ Y++N     A+ +  LM +S   PN  T  SIL
Sbjct: 352 GQLNEAQRLFDSMLAKDLVSWSTIIEAYSKNERRHEALNMFLLMRRSAVSPNIRTLISIL 411

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
              E   E    H L I  G   ETSL       Y         D+ SA  AFE+LE KD
Sbjct: 412 VISESTAEVKQIHGLVITFGLLSETSLGNALLTMY-----SRSGDLMSAWSAFEKLEEKD 466

Query: 308 VVSWTAMILAYSNHG---HGFQVFRLFARMLKSGTKP---DEITFVGVLSDCSHAGLVEK 361
            ++WT+++ A++NHG    G   +   A+ L +G +    DE     +L  C     VE 
Sbjct: 467 AITWTSIVQAFANHGCDLLGRSGYVREAKELVNGMQQGMRDEAILATLLGACVMHNEVEV 526

Query: 362 GRKTFNLMSRAYGFKPRAE-HYSCLADILRRAGQVKEAMRV 401
            R+    + R   F P     Y  LA++    G   E   V
Sbjct: 527 AREVGEDLIR---FDPSGSGGYRLLANVFASHGMRDETANV 564



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 134/267 (50%), Gaps = 27/267 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++++A +LFD M + +  S  +MI+ FL   ++ +A  LF  MP   RN+V+ + M+ 
Sbjct: 256 SGQIQDAWELFDMMPERNSYSWNAMISGFLSIGEVAEAVQLFERMPHRLRNVVSWTTMVT 315

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G  + G    AR+ FD +   +  +W ++I+ Y    Q++E +RLFD M    K++VSW+
Sbjct: 316 GLARNGLAYRAREFFDRMPVKDAAAWNAMITAYANNGQLNEAQRLFDSM--LAKDLVSWS 373

Query: 127 TVVLGCAHNG---------LIAKLEVISWT--TMCTGLERNAMTKLAREYFVQMPNKDIV 175
           T++   + N          L+ +   +S    T+ + L  +  T   ++    +    ++
Sbjct: 374 TIIEAYSKNERRHEALNMFLLMRRSAVSPNIRTLISILVISESTAEVKQIHGLVITFGLL 433

Query: 176 A----WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA--------RNGPEGA 223
           +     NA++T Y  +G++  A   F  + +++  TW +++  +A        R+G    
Sbjct: 434 SETSLGNALLTMYSRSGDLMSAWSAFEKLEEKDAITWTSIVQAFANHGCDLLGRSGYVRE 493

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A +L+N M Q   M +E    ++L +C
Sbjct: 494 AKELVNGMQQG--MRDEAILATLLGAC 518


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 175/497 (35%), Positives = 260/497 (52%), Gaps = 37/497 (7%)

Query: 13  ATKLFDEM--SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           A K+FDE   +Q    S  +MI  ++RN DL  A  L   +       VA +AMI GYV+
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPID--VAWNAMISGYVR 260

Query: 71  AGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQ----VDEGRRLFDRMPLKLKNV 122
            G  +EA   F  ++   +    Y++TSLIS      +     + GR++   +   L+ V
Sbjct: 261 RGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYI---LRTV 317

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           V  +   +   +N LI         T  T  +R  M + AR  F +MP +DI++WNA+++
Sbjct: 318 VEPSHHFVLSVNNALI---------TFYTKYDR--MIE-ARRVFDKMPVRDIISWNAVLS 365

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            YV+A  + +A+ +F+ MP+RNV TW  MI   A+NG     +KL N M      P +  
Sbjct: 366 GYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYA 425

Query: 243 CTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
               +T+C   G L+N    H+  IRLG   ++ L+       ++   G    V SA   
Sbjct: 426 FAGAITACSVLGSLDNGQQIHSQVIRLG--HDSGLSAGNALITMYSRCGV---VESAESV 480

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  +   D VSW AMI A + HGHG +   LF +M+K    PD ITF+ +L+ C+HAGL+
Sbjct: 481 FLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLI 540

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           ++GR  F+ M   YG  P  +HY+ L D+L RAG   +A  V+  M P E    +  ALL
Sbjct: 541 KEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM-PFEAGAPIWEALL 599

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
             CR+HG++ +     +RL+EL P   G Y++ +N++AA G+WDE A+VR  M ER VKK
Sbjct: 600 AGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKK 659

Query: 479 VASFSQIEVKGKDHTLL 495
               S +EV+   H  L
Sbjct: 660 EPGCSWVEVENMVHVFL 676



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 193/463 (41%), Gaps = 55/463 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +  +  A KLFD++ +PD V+  ++++ +  + ++  A+ LF A P + R+ V+ +AMI 
Sbjct: 53  SSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMIT 112

Query: 67  GYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            Y        A  +F ++    +  + ++++S++S    +   DE R       +    V
Sbjct: 113 AYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL--SLIADEERHC----QMLHCEV 166

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV--AWNAM 180
           +   T+++    N L++     + + +   ++ + +   AR+ F + P   I   +W  M
Sbjct: 167 IKLGTLLIPSVTNALLSCYVCCASSPL---VKSSQLMASARKVFDETPKNQIYEPSWTTM 223

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  YV   ++  A EL + +       WNAMI  Y R G    A      M       +E
Sbjct: 224 IAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDE 283

Query: 241 TTCTSILTSCEGMLENM-------LAHALAIRLGFEQE----TSLTYKCTCHYVFWD--- 286
            T TS++++C    E M         H   +R   E       S+       Y  +D   
Sbjct: 284 YTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMI 343

Query: 287 ----------------WGFQLD--VNSARL-----AFERLEAKDVVSWTAMILAYSNHGH 323
                           W   L   VN+ R+      F  +  ++V++WT MI   + +G 
Sbjct: 344 EARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGF 403

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +  +LF +M   G +P +  F G ++ CS  G ++ G++  + + R  G        +
Sbjct: 404 GEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIR-LGHDSGLSAGN 462

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L  +  R G V+ A  V   MP    D V   A++ A   HG
Sbjct: 463 ALITMYSRCGVVESAESVFLTMP--YVDSVSWNAMIAALAQHG 503



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 27/202 (13%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA ++FD+M   D +S  ++++ ++    + +A ++F  MPE  RN++  + MI G 
Sbjct: 341 RMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPE--RNVLTWTVMISGL 398

Query: 69  VKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + G  +E  K+F+++     E   Y++   I+       +D G+++  +          
Sbjct: 399 AQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQ---------- 448

Query: 125 WTTVVLGCAHN-GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
               V+   H+ GL A   +I+  + C  +E       A   F+ MP  D V+WNAMI A
Sbjct: 449 ----VIRLGHDSGLSAGNALITMYSRCGVVES------AESVFLTMPYVDSVSWNAMIAA 498

Query: 184 YVDAGNMAQASELFNLMPQRNV 205
               G+  +A ELF  M + ++
Sbjct: 499 LAQHGHGVKAIELFEQMMKEDI 520


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 272/541 (50%), Gaps = 49/541 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + EA KLFDEM Q +  S  +M+T F     + KA  +F AMP   ++  +   ++ G
Sbjct: 140 GLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMP--VKDSASLGTLVSG 197

Query: 68  YVKAGRVDEARKVFDE-----IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------ 116
           ++K GR+ EA ++  +       +  V ++ +LI+ Y +  +V + RRLFD +P      
Sbjct: 198 FIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQC 257

Query: 117 ------LKLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTK 160
                 +  +NVVSW +++      G +             +++SW TM  G  + +  +
Sbjct: 258 KTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDME 317

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A + F +MP+ DIV+WN +I  +   G++  A   F+ MP+R   +WN MI  Y +NG 
Sbjct: 318 EAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGH 377

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-----QETSLT 275
              A++L   M ++   P+  T +S+L +C  +          +RLG +     +++ L 
Sbjct: 378 YDGAIELFTKMLEAGGTPDRHTFSSVLAACASLP--------MLRLGAQLHQLIEKSFLP 429

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
              T + +   +     +  A   F+++  KD+VSW A+I  Y +HG   +  +LF  M 
Sbjct: 430 DTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMR 489

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            +   P  ITF+ +LS C +AGLV +G   F+ M   Y    R EHY+ L +++ R GQ+
Sbjct: 490 SARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQL 549

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            +A+ V++ MP    D  V GA LGAC    +  +A    + L ++ P SS  YVL  N+
Sbjct: 550 DDALEVINSMPI-APDRSVWGAFLGACTAKKNELLAHMAAKALSKIDPESSAPYVLIHNL 608

Query: 456 HAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           HA  G W   + VR++ME++ + K   +S I++  K H  ++     P+ +  + VLK  
Sbjct: 609 HAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVHVFISGDTSHPLTQEIFSVLKCF 668

Query: 510 D 510
           D
Sbjct: 669 D 669



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 202/449 (44%), Gaps = 81/449 (18%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVF---LRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           V  A   F  M   D VS  +++  +   L +  L  A  LF  MP  QR+ V  + ++ 
Sbjct: 77  VAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARRLFDEMP--QRDAVTWNTLLG 134

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            YV+ G + EA K+FDE+ + NV SW ++++G+F A QV++   +FD MP  +K+  S  
Sbjct: 135 AYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMP--VKDSASLG 192

Query: 127 TVVLGCAHNGLIAKLE---------------VISWTTMCTGLERNAMTKLAREYFVQMPN 171
           T+V G   NG + + E               V ++ T+     +      AR  F  +P 
Sbjct: 193 TLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPR 252

Query: 172 --------------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
                         +++V+WN+M+T Y+  G++  A E+FN MP +++ +WN MI  Y +
Sbjct: 253 GQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTK 312

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK 277
                 A KL         MP+                ++++  L IR GF Q+      
Sbjct: 313 VSDMEEAEKLF------WEMPD---------------PDIVSWNLIIR-GFTQKG----- 345

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
                         DV  AR  F+R+  +  +SW  MI  Y  +GH      LF +ML++
Sbjct: 346 --------------DVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEA 391

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  PD  TF  VL+ C+   ++  G +   L+ ++  F P     + L  +  R G + +
Sbjct: 392 GGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEKS--FLPDTATSNALMTMYSRGGALTD 449

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHG 426
           A  +  +MP  ++D V   AL+G    HG
Sbjct: 450 AEAIFKQMP--QKDLVSWNALIGGYEHHG 476



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 136/326 (41%), Gaps = 61/326 (18%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG V  A ++F+EM   D VS  +MI  + +  D+ +AE LF  MP+   +IV+ + +I 
Sbjct: 282 TGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDP--DIVSWNLIIR 339

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------PLK-- 118
           G+ + G V+ AR  FD + E    SW ++ISGY +    D    LF +M      P +  
Sbjct: 340 GFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHT 399

Query: 119 ----LKNVVSWTTVVLGCAHNGLIAK---LEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
               L    S   + LG   + LI K    +  +   + T   R      A   F QMP 
Sbjct: 400 FSSVLAACASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQ 459

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV-----------------------W-T 207
           KD+V+WNA+I  Y   G   +A +LF  M    V                       W  
Sbjct: 460 KDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMV 519

Query: 208 WNAMIDRYA----------------RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
           ++ MI  Y+                R+G    A++++N M      P+ +   + L +C 
Sbjct: 520 FDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSM---PIAPDRSVWGAFLGACT 576

Query: 252 GMLENMLAHALAIRLG-FEQETSLTY 276
                +LAH  A  L   + E+S  Y
Sbjct: 577 AKKNELLAHMAAKALSKIDPESSAPY 602



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 41/263 (15%)

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE---G 222
           F  +P + +V WN+ + A     ++A A   F  MP R+  +WN ++  Y+R+       
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
           AA +L + M Q     +  T  ++L +   +   ++  A  +     Q    ++  T   
Sbjct: 113 AARRLFDEMPQR----DAVTWNTLLGAY--VRRGLMVEAEKLFDEMPQRNVASWN-TMVT 165

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
            F+  G    VN A   F+ +  KD  S   ++  +  +G   +   L  + L+  T  D
Sbjct: 166 GFFSAG---QVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRV-TDMD 221

Query: 343 EIT--FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR---------- 390
           E    +  +++     G V   R+ F+++ R          Y C  + +R          
Sbjct: 222 EAVDAYNTLIAAYGQVGRVSDARRLFDMIPRG--------QYQCKTNNMRVFARNVVSWN 273

Query: 391 -------RAGQVKEAMRVVSKMP 406
                  R G V  A  + ++MP
Sbjct: 274 SMMTCYIRTGDVCSAREIFNEMP 296


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 160/521 (30%), Positives = 275/521 (52%), Gaps = 44/521 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F     + +A ++F+E S  D VS  S++  ++   ++ +A+ ++  MPE  R+I+A ++
Sbjct: 123 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE--RSIIASNS 180

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLK 120
           MI  +   G V EA K+FDE+ E ++ +W++LI+ + +    +E  R F    ++ + + 
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------AREYF 166
            VV+  + +  CA+  ++   ++I   ++  G E     +NA+  +         AR+ F
Sbjct: 241 EVVA-VSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 299

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +    D+++WN+MI+ Y+    +  A  +F+ MP+++V +W++MI  YA+N      + 
Sbjct: 300 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 359

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSL-------TY 276
           L   M  S F P+ETT  S++++C     + +    HA   R G      L         
Sbjct: 360 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 419

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           KC C            V +A   F  +  K + +W A+IL  + +G       +F+ M K
Sbjct: 420 KCGC------------VETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKK 467

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
               P+EITF+GVL  C H GLV++G+  F  M   +  +P  +HY C+ D+L RAG+++
Sbjct: 468 CHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQ 527

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA  ++++M P   D    GALLGAC+ HGD  M   +G +LIELQP   G +VL +N++
Sbjct: 528 EAEELLNRM-PMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIY 586

Query: 457 AARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           A++G+WD+  ++R  M + RV K+   S IE  G  H  LA
Sbjct: 587 ASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLA 627



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 173/409 (42%), Gaps = 77/409 (18%)

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL-- 130
            +D  R++F+ I   N + W  +I  Y +         L+  M        ++T  +L  
Sbjct: 27  HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86

Query: 131 GCA-----------HNGLI----------------------------------AKLEVIS 145
            C+           HN ++                                  + L+ +S
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W ++  G       + A+  + QMP + I+A N+MI  +   G + +A +LF+ M ++++
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML-ENM--LAHAL 262
            TW+A+I  + +N     A++    M +   M +E    S L++C  +L  NM  L H+L
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSL 266

Query: 263 AIRLGFEQ----ETSLTY---KCTCHYV---FWDWGFQLD----------------VNSA 296
           ++++G E     + +L Y   KC    V    +D  + LD                V++A
Sbjct: 267 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 326

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +  F+ +  KDVVSW++MI  Y+ +    +   LF  M  SG KPDE T V V+S C+  
Sbjct: 327 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 386

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             +E+G+     + R  G        + L D+  + G V+ A+ V   M
Sbjct: 387 AALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM 434


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 141/422 (33%), Positives = 230/422 (54%), Gaps = 29/422 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V  + M+ GYVK G + EAR+VF+++ + N  SW++++  Y  A ++D  R +FD MP
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP 204

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +NVVSW +                     M TG  R+ +  LAR+ F +MP +++V+
Sbjct: 205 AIGRNVVSWNS---------------------MITGFARHGLLPLARKMFDEMPVRNLVS 243

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR 235
           WN M+  Y   G M  A ELF+ MP+++V +W  MI  YA+       ++L   M  +S 
Sbjct: 244 WNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESN 303

Query: 236 FMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            +PNE T  S+L++C     + E   AHA   +     ++          ++   G    
Sbjct: 304 VLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCG---R 360

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            + A   F  L+ K+V +W A+I   + +G       +F +M +SG KP+ ITFVGVL+ 
Sbjct: 361 TDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTA 420

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+H GLV++GR+ F  M+   G +P A+HY C+ D+L RAG ++EA  ++  M P   D 
Sbjct: 421 CAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSM-PMVPDV 479

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++LGALLGACR+H  V +A  +   ++ L    SG +VL ++++AA G+W +    R  +
Sbjct: 480 MILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVL 539

Query: 473 ER 474
           ++
Sbjct: 540 QK 541



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 134/264 (50%), Gaps = 23/264 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA ++F++M Q + VS ++M+  +    +L  A  +F  MP   RN+V+ ++MI G
Sbjct: 160 GEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITG 219

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + + G +  ARK+FDE+   N+ SW +++ GY    ++++ R LFDRMP   K+VVSWT 
Sbjct: 220 FARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMP--EKDVVSWTC 277

Query: 128 VVLGCAH------------------NGLIAKLEVISWTTMC---TGLERNAMTKLAREYF 166
           ++ G A                   N L  ++ ++S  + C   T LE         +  
Sbjct: 278 MISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKH 337

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             + + +     A+I  Y   G    A ++F+ + Q+NV  WNA+I   A NG   +++ 
Sbjct: 338 KMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSID 397

Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
           +   M +S   PN  T   +LT+C
Sbjct: 398 VFEQMRRSGEKPNGITFVGVLTAC 421



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 60/241 (24%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE-- 61
           +   G++ +A +LFD M + D VS   MI+ + +     +   LFRAM +S+ N++    
Sbjct: 251 YAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAM-QSESNVLPNEV 309

Query: 62  ---------------------------------------SAMIDGYVKAGRVDEARKVFD 82
                                                  +A+ID Y K GR D A K+F 
Sbjct: 310 TMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFH 369

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAK 140
            + + NV +W +LI+G      V     +F++M    +  N +++  V+  CAH GL+ +
Sbjct: 370 SLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDE 429

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                         R     +A    VQ   K    +  M+     AG + +A EL   M
Sbjct: 430 -------------GRRCFQSMASTCGVQPEAKH---YGCMVDMLGRAGLLEEAEELIRSM 473

Query: 201 P 201
           P
Sbjct: 474 P 474


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 160/521 (30%), Positives = 275/521 (52%), Gaps = 44/521 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F     + +A ++F+E S  D VS  S++  ++   ++ +A+ ++  MPE  R+I+A ++
Sbjct: 258 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE--RSIIASNS 315

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLK 120
           MI  +   G V EA K+FDE+ E ++ +W++LI+ + +    +E  R F    ++ + + 
Sbjct: 316 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 375

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------AREYF 166
            VV+  + +  CA+  ++   ++I   ++  G E     +NA+  +         AR+ F
Sbjct: 376 EVVA-VSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLF 434

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +    D+++WN+MI+ Y+    +  A  +F+ MP+++V +W++MI  YA+N      + 
Sbjct: 435 DEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLA 494

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLT-------Y 276
           L   M  S F P+ETT  S++++C     + +    HA   R G      L         
Sbjct: 495 LFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYM 554

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           KC C            V +A   F  +  K + +W A+IL  + +G       +F+ M K
Sbjct: 555 KCGC------------VETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKK 602

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
               P+EITF+GVL  C H GLV++G+  F  M   +  +P  +HY C+ D+L RAG+++
Sbjct: 603 CHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQ 662

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA  ++++M P   D    GALLGAC+ HGD  M   +G +LIELQP   G +VL +N++
Sbjct: 663 EAEELLNRM-PMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIY 721

Query: 457 AARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           A++G+WD+  ++R  M + RV K+   S IE  G  H  LA
Sbjct: 722 ASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLA 762


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 161/510 (31%), Positives = 269/510 (52%), Gaps = 31/510 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++++A KLF EM   D +S  SM+   L+  DL  A  +F  M  S+RN+V+ + +I+G
Sbjct: 95  GRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKM--SERNVVSWTTIING 152

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            ++ GRV+ A  +F  +   +V +W S++ G+F   +V++   LF++MP +  NV+SWT+
Sbjct: 153 LLEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNR--NVISWTS 210

Query: 128 VVLGCAHNG-----------LIAKLEVISWTTMCTGLE-RNAMTKLAREYFVQMPNKDIV 175
           V+ G  HNG           ++A  +  S T  C      N  T         +  K   
Sbjct: 211 VIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGY 270

Query: 176 AWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +N  I+A     Y +   +  AS +FN    RNV  W A++  Y  N     A+++   
Sbjct: 271 CFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKG 330

Query: 231 MFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +   +PN+++ TS L SC   E +      HA+A +LG E +  ++      Y     
Sbjct: 331 MMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCG- 389

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                +N     F R+  K+VVSW ++I+  + HG G     LFA+M+++   PDEIT  
Sbjct: 390 ----HINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLA 445

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           G+LS C H+G++ KGR  F    + +G +   EHYS + D+L R GQ++EA  ++  MP 
Sbjct: 446 GLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPG 505

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + +++V  ALL +   H +V +A+   + +++LQP+ S AY L +N++A+ G+W E ++
Sbjct: 506 -KANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSK 564

Query: 468 VRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +RKKM +  + K    S I +KG  H  ++
Sbjct: 565 IRKKMKDEGILKQPGSSWITIKGIKHNFIS 594



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 184/389 (47%), Gaps = 24/389 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  +++ GR+DEAR +F+++    V  +T +I GY    ++++  +LF  MP  +K+++
Sbjct: 56  LLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMP--VKDLI 113

Query: 124 SWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW +++ GC   G           +++  V+SWTT+  GL      ++A   F  MP KD
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           + AWN+M+  +   G +  A ELF  MP RNV +W ++I     NG    A+ + + M  
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLA 233

Query: 234 SRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           S F    +T    LT+C  +    +    H L ++ G+     ++      Y        
Sbjct: 234 S-FKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKL--- 289

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +++A   F    +++VV WTA++  Y  +       ++F  M++    P++ +    L
Sbjct: 290 --IDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSAL 347

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + C     V++GR+  + ++   G +      + L  +  + G + + + V ++M    +
Sbjct: 348 NSCCGLEAVDRGREV-HAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMS--RK 404

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLI 439
           + V   +++  C  HG  R A  +  ++I
Sbjct: 405 NVVSWNSIIVGCAQHGFGRWALTLFAQMI 433



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 119/292 (40%), Gaps = 59/292 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR------- 56
           F   G+V++A +LF++M   + +S  S+I     N    +A  +F  M  S +       
Sbjct: 184 FFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLA 243

Query: 57  -----------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
                                        N    +++I  Y     +D A  +F++    
Sbjct: 244 CALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSR 303

Query: 88  NVYSWTSLISGY-FKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           NV  WT+L++GY    R  D  +     M +  L N  S T+ +  C        LE + 
Sbjct: 304 NVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSC------CGLEAVD 357

Query: 146 WTTMCTGLERNAMT-KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                 G E +A+  KL  E        DI   N+++  Y   G++     +F  M ++N
Sbjct: 358 -----RGREVHAVAHKLGLE-------SDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKN 405

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGML 254
           V +WN++I   A++G    A+ L   M ++R  P+E T   +L++C   GML
Sbjct: 406 VVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGML 457


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/503 (31%), Positives = 270/503 (53%), Gaps = 30/503 (5%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAMIDGYVKAG 72
           +++++  +P+ ++ AS+++     +DL     L   +   E   ++ A   +ID Y K G
Sbjct: 236 EMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCG 295

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVV 129
           R++ AR+VFD + E N  SWTSLI G  +A   +E   LF++M   P+   +  +  TV+
Sbjct: 296 RLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVA-SDQFTLATVL 354

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIV 175
             C     I+  E +   T+  GL+      NA+  +         A   F  MP +DI+
Sbjct: 355 GVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDII 414

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +W AMITA+  AG++ +A E F+ MP+RNV +WN+M+  Y + G     +K+   M +  
Sbjct: 415 SWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREG 474

Query: 236 FMPNETTCTSILTSCEGMLENMLAH---ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +  T ++ +++C  +   +L +   A A +LGF    S+       Y          
Sbjct: 475 VKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCG-----Q 529

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A+  F  +  K++VSW AM+  Y+ +G G +V  +F +ML  G  PD+I++V VLS 
Sbjct: 530 IEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSG 589

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+G V +G+  F  M++ +G  P +EH+ C+ D+L RAGQ+++A  ++++M P + + 
Sbjct: 590 CSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQM-PFKPNA 648

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            + GALL ACR+HG+ ++A+   + L+EL     G+Y L AN+++  G+      VRK M
Sbjct: 649 AIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLM 708

Query: 473 -ERRVKKVASFSQIEVKGKDHTL 494
            ++ V+K    S IEV  + H  
Sbjct: 709 RDKGVRKNPGCSWIEVDNRVHVF 731



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 213/497 (42%), Gaps = 61/497 (12%)

Query: 13  ATKLFDEMSQPDPVSCASM--ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
           + K ++ M +     CAS+  I +  + H    A+ +F  +  S   I  ++ +++ Y  
Sbjct: 4   SQKFYESMKE-----CASLRSIPIARKLH----AQLIFMGLKSS---IFLQNHLLNMYSN 51

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G + +A +VF  I   NVYSW ++ISG+  + Q+ E  +LF++MP +  + VSW +++ 
Sbjct: 52  CGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPER--DSVSWNSMMS 109

Query: 131 GCAHNGLIAK---------------------------LEVISWTTMCTGLERNAMTKLAR 163
           G  HNG +                             ++    T++     +      A+
Sbjct: 110 GYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQ 169

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + F + PN  +  WN+MI  Y   G++ +A ELF  MP+R+  +WN MI   +++G    
Sbjct: 170 KVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAE 229

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTC 280
            +     M+   F PN  T  S+L++C  + +       HA  +R+    E  L     C
Sbjct: 230 TLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRM----EPCLDVYAGC 285

Query: 281 HYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
             +  +   G    + SAR  F+ L   + VSWT++I   +  G   +   LF +M +  
Sbjct: 286 GLIDMYAKCG---RLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVP 342

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
              D+ T   VL  C     +  G +  +  +   G        + L  +  + G V +A
Sbjct: 343 VASDQFTLATVLGVCLSQKDISIGEQ-LHAHTITRGLDSSVPVANALVTMYAKCGDVWKA 401

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
                 MP   RD +   A++ A    GDV  A    +++ E    S  + + +   +  
Sbjct: 402 NHAFELMPI--RDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLAT---YMQ 456

Query: 459 RGEWDEFAQVRKKMERR 475
           RG W+E  +V  +M R 
Sbjct: 457 RGYWEEGLKVYIQMLRE 473



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 216/502 (43%), Gaps = 67/502 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP---KAEALFRAMPESQR-- 56
           S F  +G+++EA KLF++M + D VS  SM++ +  N +L    KA      +  + +  
Sbjct: 78  SGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLH 137

Query: 57  ----------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
                     +   E++++D Y+K G +D A+KVF      +++ W S+I GY K   V 
Sbjct: 138 GFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVK 197

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA---- 162
           +   LF +MP   ++ VSW T++   + +G  A+           G   N+MT  +    
Sbjct: 198 KALELFAKMP--ERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSA 255

Query: 163 -------------REYFVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
                            V+M P  D+ A   +I  Y   G +  A ++F+ + + N  +W
Sbjct: 256 CTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSW 315

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
            ++I   A+ G +  A+ L N M +     ++ T  ++L  C    +  +    HA  I 
Sbjct: 316 TSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTIT 375

Query: 266 LGFEQETSLTYKCTCHYV----FW--DWGFQL--------------------DVNSARLA 299
            G +    +       Y      W  +  F+L                    DV  AR  
Sbjct: 376 RGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREY 435

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F+++  ++V+SW +M+  Y   G+  +  +++ +ML+ G K D ITF   +S C+   ++
Sbjct: 436 FDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVL 495

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
             G +     +   GF       + +  +  R GQ++EA ++ S +    ++ V   A++
Sbjct: 496 ILGNQIL-AQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIV--MKNLVSWNAMM 552

Query: 420 GACRLHGDVRMADYIGERLIEL 441
                +G  R    I E+++ +
Sbjct: 553 AGYAQNGQGRKVIEIFEKMLNI 574


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 265/516 (51%), Gaps = 35/516 (6%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA-- 60
           +F   G ++ A +L ++  +PD +   +  +V     DL   +   R     Q N V   
Sbjct: 77  RFCELGNLRRAMELINQSPKPD-LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 61  ---ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-P 116
               S ++  YV  G + E R++FD++    V+ W  L++GY K     E   LF RM  
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM----PNK 172
           L ++ V S   +         +   +VISW +M +G   N +++   + F QM     N 
Sbjct: 196 LGIRRVESARKLF------DELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINT 249

Query: 173 DIVAW--------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           D+           N ++  Y  +GN+  A ++F  M +R+V +W +MI  YAR G    +
Sbjct: 250 DLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 309

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYKCTCH 281
           ++L + M +    PN  T   IL +C  +  LE     H   +R GF  +  +       
Sbjct: 310 VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 369

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y+         +  ARL F+ +  KD+VSWT MI  Y  HG+G +    F  M  SG +P
Sbjct: 370 YLKCG-----ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEP 424

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           DE++F+ +L  CSH+GL+++G   FN+M      +P++EHY+C+ D+L RAG + +A + 
Sbjct: 425 DEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKF 484

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + KM P E D  + GALL  CR++ DV++A+ + E + EL+P ++G YVL AN++A   +
Sbjct: 485 I-KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEK 543

Query: 462 WDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           W+E  ++R+++ RR ++K    S IE+KGK H  + 
Sbjct: 544 WEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 579


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 235/424 (55%), Gaps = 31/424 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V+ + +I GYVK G ++ A++VFDE+   N  SW++++ GY  A ++D  R +FDRMP
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +NVV+W ++V                     TG  R+ +  LAR+ F +MP +++V+
Sbjct: 221 AIGRNVVTWNSMV---------------------TGFARHGLLPLARKMFDEMPVRNLVS 259

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR 235
           WNAM+  Y    +M  A ELF++MP+++V +W  MI  YA+ G     ++L   M  +S 
Sbjct: 260 WNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN 319

Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PNE T  S+L++C  +    E    HA   +                 ++   G + D
Sbjct: 320 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCG-RTD 378

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   F  L+ K+V +W A+I   + +G+       F +M ++G KP++ITFVGVL+ 
Sbjct: 379 I--AVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTA 436

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLV++GR+ F  M+   G +P  +HY C+ D+L RAG ++EA  ++  M P   D 
Sbjct: 437 CSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSM-PMAPDV 495

Query: 413 VVLGALLGACRLHGDVRMADYIGERL--IELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           +V GALLGACR+H    +A+ +   +  + L    SG +VL ++++AA G+W +  + R+
Sbjct: 496 MVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQ 555

Query: 471 KMER 474
            ++R
Sbjct: 556 VVQR 559



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 23/265 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+++ A ++FDEM + + VS ++M+  +    +L  A  +F  MP   RN+V  ++M+ G
Sbjct: 176 GEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTG 235

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + + G +  ARK+FDE+   N+ SW +++ GY     +D  R LFD MP   K+VVSWT 
Sbjct: 236 FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP--EKDVVSWTC 293

Query: 128 VVLGCAHNGL---------------------IAKLEVISWTTMCTGLERNAMTKLAREYF 166
           ++ G A  G                      +  + V+S     T LE         +  
Sbjct: 294 MISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKH 353

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             + N +     A+I  Y   G    A ++FN + ++NV  WNA+I R A NG    ++ 
Sbjct: 354 KMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVD 413

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE 251
               M ++   PN+ T   +LT+C 
Sbjct: 414 AFEQMKRTGEKPNDITFVGVLTACS 438



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 30/208 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + F   G +  A K+FDEM   + VS  +M+  +  N D+  A  LF  MPE  +++V+
Sbjct: 233 VTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPE--KDVVS 290

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIY-EGNV----YSWTSLISGYFKARQVDEGR---RLF 112
            + MI GY +AGR  +  ++F  +  E NV     +  S++S       ++EGR      
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D+  + L N  +     LG A   + AK                  T +A + F  +  K
Sbjct: 351 DKHKMVLNNEYN-----LGAALIDMYAKC---------------GRTDIAVKIFNSLDRK 390

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLM 200
           ++ AWNA+IT     GN   + + F  M
Sbjct: 391 NVSAWNALITRLAMNGNARDSVDAFEQM 418


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 232/444 (52%), Gaps = 37/444 (8%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +I   +A+ID Y + G   V +A K+F+++ E +  SW S++ G  KA ++ + RRLFD 
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP +                       ++ISW TM  G  R      A E F +MP ++ 
Sbjct: 211 MPQR-----------------------DLISWNTMLDGYARCREMSKAFELFEKMPERNT 247

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           V+W+ M+  Y  AG+M  A  +F+ MP   +NV TW  +I  YA  G    A +L++ M 
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307

Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            S    +     SIL +C   G+L   M  H++  R        +       Y       
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG--- 364

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             ++  A   F  +  KD+VSW  M+     HGHG +   LF+RM + G +PD++TF+ V
Sbjct: 365 --NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAV 422

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+HAGL+++G   F  M + Y   P+ EHY CL D+L R G++KEA++VV  M P E
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM-PME 481

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + V+ GALLGACR+H +V +A  + + L++L P   G Y L +N++AA  +W+  A +R
Sbjct: 482 PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIR 541

Query: 470 KKMERR-VKKVASFSQIEVKGKDH 492
            KM+   V+K +  S +E++   H
Sbjct: 542 SKMKSMGVEKPSGASSVELEDGIH 565



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 147/264 (55%), Gaps = 21/264 (7%)

Query: 6   CTG-KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           C G  V++A KLF++MS+ D VS  SM+   ++  +L  A  LF  MP  QR++++ + M
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP--QRDLISWNTM 222

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +DGY +   + +A ++F+++ E N  SW++++ GY KA  ++  R +FD+MPL  KNVV+
Sbjct: 223 LDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVT 282

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA----------------REYFVQ 168
           WT ++ G A  GL+ + + +    + +GL+ +A   ++                    ++
Sbjct: 283 WTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK 342

Query: 169 MPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             N    A+  NA++  Y   GN+ +A ++FN +P++++ +WN M+     +G    A++
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402

Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
           L + M +    P++ T  ++L SC
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSC 426



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           N A   F +++  +V    ++I A++ +   +Q F +F+ M + G   D  T+  +L  C
Sbjct: 68  NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPPHERD 411
           S    +   +   N + +  G        + L D   R G   V++AM++  KM   ERD
Sbjct: 128 SGQSWLPVVKMMHNHIEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM--SERD 184

Query: 412 HVVLGALLGACRLHGDVRMA 431
            V   ++LG     G++R A
Sbjct: 185 TVSWNSMLGGLVKAGELRDA 204


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 166/492 (33%), Positives = 247/492 (50%), Gaps = 58/492 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++I  Y   G +D A  VF +I E ++ SW S+ISG+ +    +E  +LF RM 
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN----------AMTKL--- 161
           ++    N V+   V+  CA       LE   W   C  +ERN          AM  +   
Sbjct: 225 MENARPNRVTMVGVLSACAKR---IDLEFGRWA--CDYIERNGIDINLILSNAMLDMYVK 279

Query: 162 ------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                 AR  F +M  KDIV+W  MI  Y   G+   A  +F++MP+ ++  WNA+I  Y
Sbjct: 280 CGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY 339

Query: 216 ARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-------GMLENMLAHALAIRLG 267
            +NG P+ A      L       PNE T  S L +C        G   ++      I+L 
Sbjct: 340 QQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLN 399

Query: 268 FEQETSLT--YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           F   TSL   Y    H           +  A   F  +E +DV  W+AMI   + HGHG 
Sbjct: 400 FHITTSLIDMYSKCGH-----------LEKALEVFYSVERRDVFVWSAMIAGLAMHGHGR 448

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF++M ++  KP+ +TF  +L  CSH+GLV++GR  FN M   YG  P ++HY+C+
Sbjct: 449 AAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACM 508

Query: 386 ADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            DIL RAG ++EA+ ++ KMP  P      V GALLGACR++G+V +A+    RL+E   
Sbjct: 509 VDILGRAGCLEEAVELIEKMPIVPSAS---VWGALLGACRIYGNVELAEMACSRLLETDS 565

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----P 497
           ++ GAYVL +N++A  G+WD  +++R+ M+   ++K    S IEV G  H  L      P
Sbjct: 566 NNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHP 625

Query: 498 MREMGYVVLKEV 509
           +    Y  L E+
Sbjct: 626 LSTEIYSKLDEI 637



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 58/303 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQR------ 56
           +   G +  A  +F ++ + D VS  SMI+ F++     +A  LF+ M  E+ R      
Sbjct: 176 YSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTM 235

Query: 57  ------------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         N++  +AM+D YVK G +++AR++FD++ E
Sbjct: 236 VGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEE 295

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVIS 145
            ++ SWT++I GY K    D  RR+FD MP   +++ +W  ++     NG   + L +  
Sbjct: 296 KDIVSWTTMIDGYAKVGDYDAARRVFDVMP--REDITAWNALISSYQQNGKPKEALAIFR 353

Query: 146 WTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAW-----------------NAMITAYVDA 187
              +    + N +T  +      Q+   D+  W                  ++I  Y   
Sbjct: 354 ELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKC 413

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++ +A E+F  + +R+V+ W+AMI   A +G   AA+ L + M +++  PN  T T++L
Sbjct: 414 GHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLL 473

Query: 248 TSC 250
            +C
Sbjct: 474 CAC 476


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 235/424 (55%), Gaps = 31/424 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V+ + +I GYVK G ++ A++VFDE+   N  SW++++ GY  A ++D  R +FDRMP
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +NVV+W ++V                     TG  R+ +  LAR+ F +MP +++V+
Sbjct: 221 AIGRNVVTWNSMV---------------------TGFARHGLLPLARKMFDEMPVRNLVS 259

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR 235
           WNAM+  Y    +M  A ELF++MP+++V +W  MI  YA+ G     ++L   M  +S 
Sbjct: 260 WNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN 319

Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PNE T  S+L++C  +    E    HA   +                 ++   G + D
Sbjct: 320 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCG-RTD 378

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   F  L+ K+V +W A+I   + +G+       F +M ++G KP++ITFVGVL+ 
Sbjct: 379 I--AVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTA 436

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLV++GR+ F  M+   G +P  +HY C+ D+L RAG ++EA  ++  M P   D 
Sbjct: 437 CSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSM-PMAPDV 495

Query: 413 VVLGALLGACRLHGDVRMADYIGERL--IELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           +V GALLGACR+H    +A+ +   +  + L    SG +VL ++++AA G+W +  + R+
Sbjct: 496 MVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQ 555

Query: 471 KMER 474
            ++R
Sbjct: 556 VVQR 559



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 23/265 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+++ A ++FDEM + + VS ++M+  +    +L  A  +F  MP   RN+V  ++M+ G
Sbjct: 176 GEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTG 235

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + + G +  ARK+FDE+   N+ SW +++ GY     +D  R LFD MP   K+VVSWT 
Sbjct: 236 FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP--EKDVVSWTC 293

Query: 128 VVLGCAHNGL---------------------IAKLEVISWTTMCTGLERNAMTKLAREYF 166
           ++ G A  G                      +  + V+S     T LE         +  
Sbjct: 294 MISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKH 353

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             + N +     A+I  Y   G    A ++FN + ++NV  WNA+I R A NG    ++ 
Sbjct: 354 KMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVD 413

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE 251
               M ++   PN+ T   +LT+C 
Sbjct: 414 AFEQMKRTGEKPNDITFVGVLTACS 438



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 30/208 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + F   G +  A K+FDEM   + VS  +M+  +  N D+  A  LF  MPE  +++V+
Sbjct: 233 VTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPE--KDVVS 290

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIY-EGNV----YSWTSLISGYFKARQVDEGR---RLF 112
            + MI GY +AGR  +  ++F  +  E NV     +  S++S       ++EGR      
Sbjct: 291 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 350

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D+  + L N  +     LG A   + AK                  T +A + F  +  K
Sbjct: 351 DKHKMVLNNEYN-----LGAALIDMYAKC---------------GRTDIAVKIFNSLDRK 390

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLM 200
           ++ AWNA+IT     GN   + + F  M
Sbjct: 391 NVSAWNALITRLAMNGNAQDSVDAFEQM 418


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 263/522 (50%), Gaps = 45/522 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F  +G  +EA  LFD M + D ++   M+TV     ++  A+  F  MPE  R++VA 
Sbjct: 62  SAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPE--RDLVAW 119

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +AM+    + G+++ AR+ FD++ E N++SWTSL+S Y ++  V    R+FD MP     
Sbjct: 120 TAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMP----- 174

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
              W                 +++WT M TG   +     A+  F  MP +D++AW AM+
Sbjct: 175 --EWN----------------LVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAML 216

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-----FQSRF 236
           +AY   G++    E+F  MP+R++ +W  M+     N     + +L + M          
Sbjct: 217 SAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGM 276

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            PN  T  ++L +C     + E    HA     GF+ +  ++      Y     G    +
Sbjct: 277 TPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFY-----GRCGAL 331

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A++ F+ +  +DV+SW++MI A++  G   +   L+ RML  GT PD+I F+ VL  C
Sbjct: 332 GDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFAC 391

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S++G+VE     F  +      +P  EHY+C+ D+L RAG++++A  ++  MP H    +
Sbjct: 392 SNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLL 451

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
            +  +L AC+L+ DV   +   E + EL P +S  Y+  AN+++A     + A++RK ME
Sbjct: 452 YM-TMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLME 510

Query: 474 RR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
            R +KK    S IEV  + H  +A     P R+  Y  ++ +
Sbjct: 511 ERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRL 552



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 182/387 (47%), Gaps = 30/387 (7%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + + G V+ AR++FD I + + +SW  ++S Y ++  +   + +FDRMP    ++ SWT 
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMP--RWSLGSWTA 59

Query: 128 VVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++   A +G           + + ++I+WT M T L   +  + A+ +F QMP +D+VAW
Sbjct: 60  LLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAW 119

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            AM+ A  + G M  A E F+ MP+RN+++W +++  Y R+G   AA ++ + M +    
Sbjct: 120 TAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEW--- 176

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            N    T++LT     L   +  A        +   + +          + F   +   R
Sbjct: 177 -NLVAWTAMLTGYS--LSGDVVRAKRAFDSMPERDLIAWTAMLSA----YAFNGHLRYTR 229

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-----LKSGTKPDEITFVGVLSD 352
             F+R+  +D++SW  M+ A   +    +   LF RM     L  G  P+ +TF+ +L  
Sbjct: 230 EIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDA 289

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CS  G + +GRK    ++   GF       + L +   R G + +A  V   M    RD 
Sbjct: 290 CSFLGALAEGRKIHAAVAE-RGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM--RRRDV 346

Query: 413 VVLGALLGACRLHGDVRMADYIGERLI 439
           +   +++ A    G V  A  +  R++
Sbjct: 347 ISWSSMISAFAQRGRVDEAMELYHRML 373


>gi|302760807|ref|XP_002963826.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
 gi|300169094|gb|EFJ35697.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
          Length = 535

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 254/518 (49%), Gaps = 57/518 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V+EA K FD M   D VS   M++ + +   + +A+ LF ++P   +++  E+AM+  
Sbjct: 14  GNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLP--WKSLACENAMLQA 71

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G ++ A+ VFD + + +V SWT++I  Y +     + + LFDR   + KN++SWT 
Sbjct: 72  YSLNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDR--FERKNIISWTA 129

Query: 128 VVLGCAHNGL----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           +V   + N            + + +V SW  + +    N   + A+  F +MP++D+VAW
Sbjct: 130 MVHAYSQNKSFDLAREMFERMPQHDVFSWNILLSAYAHNGHLESAKIAFERMPSRDVVAW 189

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-------------------- 217
           N++I  +   G + +A ELF+LMP+ N   WN MI   A+                    
Sbjct: 190 NSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVI 249

Query: 218 ---------------NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLA 259
                          +G + +AM +  LM      P+  T  +I  +C  +    E    
Sbjct: 250 SWTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANAEEGSAF 309

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
            A  +  G  Q++ +            +G       A   F+++  +D VSW AM+ A++
Sbjct: 310 IASIVHPGILQDSVVVGNAALTM----YGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAFA 365

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +GHG     +F  M   G  PD ITFV VLS CSHAGL+ + R  F+ +SR YG  P  
Sbjct: 366 RNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISRDYGLTPIY 425

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +HY CL D+L R+G++ EA  +V+ M P E ++    ALLGACR HGDVR  +      +
Sbjct: 426 DHYVCLTDLLARSGRLVEAEELVNSM-PFEPNYEAWMALLGACRSHGDVRRGNRAAGFFV 484

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477
           +    +   Y+L ++++A  G  D+   +RK M R+ K
Sbjct: 485 QADVDAESPYILLSHLYAEAGSKDDVLVIRKAMRRKTK 522


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 235/424 (55%), Gaps = 31/424 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V+ + +I GYVK G ++ A++VFDE+   N  SW++++ GY  A ++D  R +FDRMP
Sbjct: 23  DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +NVV+W ++V                     TG  R+ +  LAR+ F +MP +++V+
Sbjct: 83  AIGRNVVTWNSMV---------------------TGFARHGLLPLARKMFDEMPVRNLVS 121

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR 235
           WNAM+  Y    +M  A ELF++MP+++V +W  MI  YA+ G     ++L   M  +S 
Sbjct: 122 WNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN 181

Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PNE T  S+L++C  +    E    HA   +                 ++   G + D
Sbjct: 182 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCG-RTD 240

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   F  L+ K+V +W A+I   + +G+       F +M ++G KP++ITFVGVL+ 
Sbjct: 241 I--AVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTA 298

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLV++GR+ F  M+   G +P  +HY C+ D+L RAG ++EA  ++  M P   D 
Sbjct: 299 CSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSM-PMAPDV 357

Query: 413 VVLGALLGACRLHGDVRMADYIGERL--IELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           +V GALLGACR+H    +A+ +   +  + L    SG +VL ++++AA G+W +  + R+
Sbjct: 358 MVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQ 417

Query: 471 KMER 474
            ++R
Sbjct: 418 VVQR 421



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 127/264 (48%), Gaps = 23/264 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+++ A ++FDEM + + VS ++M+  +    +L  A  +F  MP   RN+V  ++M+ G
Sbjct: 38  GEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTG 97

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           + + G +  ARK+FDE+   N+ SW +++ GY     +D  R LFD MP   K+VVSWT 
Sbjct: 98  FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP--EKDVVSWTC 155

Query: 128 VVLGCAHNGL---------------------IAKLEVISWTTMCTGLERNAMTKLAREYF 166
           ++ G A  G                      +  + V+S     T LE         +  
Sbjct: 156 MISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKH 215

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             + N +     A+I  Y   G    A ++FN + ++NV  WNA+I R A NG    ++ 
Sbjct: 216 KMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVD 275

Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
               M ++   PN+ T   +LT+C
Sbjct: 276 AFEQMKRTGEKPNDITFVGVLTAC 299



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 30/210 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + F   G +  A K+FDEM   + VS  +M+  +  N D+  A  LF  MPE  +++V+
Sbjct: 95  VTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPE--KDVVS 152

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIY-EGNV----YSWTSLISGYFKARQVDEGR---RLF 112
            + MI GY +AGR  +  ++F  +  E NV     +  S++S       ++EGR      
Sbjct: 153 WTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFI 212

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D+  + L N  +     LG A   + AK                  T +A + F  +  K
Sbjct: 213 DKHKMVLNNEYN-----LGAALIDMYAKC---------------GRTDIAVKIFNSLDRK 252

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           ++ AWNA+IT     GN   + + F  M +
Sbjct: 253 NVSAWNALITRLAMNGNARDSVDAFEQMKR 282


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/510 (32%), Positives = 255/510 (50%), Gaps = 67/510 (13%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +  + +I  Y + GR  EARKVFD++   N+YSW  +++GY K   V+  R+LFDRM   
Sbjct: 99  IVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM--M 156

Query: 119 LKNVVSWTTVVLGCAHNG-----------------------------LIAKLE------- 142
            K+VVSW T+VL  A  G                             L  KL+       
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 143 -------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
                        ++  +++     +    + AR  F +M  KDI AW  +++ Y   G+
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           M  ASELF+ MP++N  +W+A+I  YARN     A+     M +    P + T +S L +
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 250 CE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C     +      H   IR  F   T +       Y     G    + ++   F  +  K
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYS--KCGM---LEASCCVFHLMGNK 391

Query: 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            DVV W  MI A + +GHG +  ++F  M++SG KPD ITF+ +LS CSH+GLV++G + 
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRF 451

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M+  +G  P  EHYSCL D+L RAG   E +  +  M     D  V  ALLG CR+H
Sbjct: 452 FKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDR-VWSALLGVCRIH 510

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            ++ +   + ER+IEL+P SS AYV  A+++A  G+W+   +VR+ M E+ ++K    S 
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISW 570

Query: 485 IEVKGKDHTLLA-----PMREMGYVVLKEV 509
           I+V  K H+ +A     P++E  Y++L+++
Sbjct: 571 IDVGNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 144/339 (42%), Gaps = 77/339 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------------------ 49
           G V  A KLFD M + D VS  +++  + +     +A  L+R                  
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202

Query: 50  ----AMPESQ---------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                + E Q                N+V  S+++D Y K G +  AR +FDE+   +++
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIH 262

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL------------- 137
           +WT+++SGY K   ++    LF +MP   KN VSW+ ++ G A N L             
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMP--EKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 138 --IAKLEVISWTTMCTGLERNAMTK-------LAREYFVQMPNKDIVAWNAMITAYVDAG 188
             I   +    + +C      A+         L R YF      + +  +++I  Y   G
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYF----RCNTIVVSSLIDMYSKCG 376

Query: 189 NMAQASELFNLM-PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
            +  +  +F+LM  +++V  WN MI   A+NG    AM++ N M +S   P+  T   IL
Sbjct: 377 MLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVIL 436

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           ++C        +H+  ++ G     ++TY    H VF D
Sbjct: 437 SAC--------SHSGLVQEGLRFFKAMTYD---HGVFPD 464


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 161/503 (32%), Positives = 260/503 (51%), Gaps = 47/503 (9%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAE 61
           GK  E+  LF++M +    PD V+  +++    +   + KA  +  +    + Q +++  
Sbjct: 110 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 169

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +AMID Y K G V+ AR++FD + E NV SW+++I+ Y    Q   GR+  D   + L +
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---GRKALDLFRMMLSS 226

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                          L  K+ + S    C+ L+   M +L      +   + D     A+
Sbjct: 227 -------------GMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 273

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y     +  A  LF+ MP+R++ TW  MI  YA  G    ++ L + M +   +P++
Sbjct: 274 VDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDK 333

Query: 241 TTCTSILTSCEGMLENMLAHAL---AIRLGFEQETSLTY-------KCTCHYVFWDWGFQ 290
               +++ +C  +     A  +     R  F+ +  L         KC C          
Sbjct: 334 VAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC---------- 383

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             V SAR  F+R+E K+V+SW+AMI AY  HG G +   LF  ML+SG  P++IT V +L
Sbjct: 384 --VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLL 441

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             CSHAGLVE+G + F+LM   Y  +   +HY+C+ D+L RAG++ EA++++  M   E+
Sbjct: 442 YACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTV-EK 500

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  + GA LGACR H DV +A+     L+ELQP + G Y+L +N++A  G W++ A+ R 
Sbjct: 501 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 560

Query: 471 KM-ERRVKKVASFSQIEVKGKDH 492
            M +RR+KK+  ++ IEV  K H
Sbjct: 561 LMSQRRLKKIPGWTWIEVDNKSH 583



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 186/376 (49%), Gaps = 32/376 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D YVK   +++AR +FD++ E ++ +WT +I GY +  + +E   LF++M  +  +
Sbjct: 69  AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 128

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + V+  TVV  CA  G + K  +I                + R+ F      D++   A
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIID-------------DYIQRKKF----QLDVILGTA 171

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           MI  Y   G +  A E+F+ M ++NV +W+AMI  Y  +G    A+ L  +M  S  +P+
Sbjct: 172 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 231

Query: 240 ETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           + T  S+L +C   L+N+    L H +  + G + +  +     C  +   +G   ++  
Sbjct: 232 KITLASLLYACSD-LKNLQMGRLIHHIVYKFGLDLDHFV-----CAALVDMYGKCREIED 285

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           AR  F+++  +D+V+WT MI  Y+  G+  +   LF +M + G  PD++  V V+  C+ 
Sbjct: 286 ARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 345

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            G + K R   + + R   F+      + + D+  + G V+ A  +  +M   E++ +  
Sbjct: 346 LGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRM--EEKNVISW 402

Query: 416 GALLGACRLHGDVRMA 431
            A++ A   HG  R A
Sbjct: 403 SAMIAAYGYHGQGRKA 418


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 278/582 (47%), Gaps = 106/582 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+ EA  LF+EM   + VS  +MI   +RN DL  A  +F   P   +N  + + MI G
Sbjct: 86  GKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESP--VKNAASWNGMIAG 143

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + GR++EAR +FDE+ + NV +WTS++SGY +A +V+EG  LF  MP   +N+VSWT 
Sbjct: 144 YAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMP--KRNIVSWTA 201

Query: 128 VVLGCAHNG-----LIAKLEV-------------ISWTTMCTGLERNAMTK--------- 160
           ++ G   NG     L+  LE+             IS    C GL  + + K         
Sbjct: 202 MIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITE 261

Query: 161 --------------------------LAREYFVQMPNKDIV-AWNAMITAYVDAGNMAQA 193
                                      A   F +  N  +V + N MI  Y+  G + +A
Sbjct: 262 GLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKA 321

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LF+ MP R+  TW +MID Y   G    A  L        +MP E    +  T   G 
Sbjct: 322 QNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLF------LYMP-EKDAVAWTTMISGH 374

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVF----------WDWGFQL------------ 291
           + N L  A A  L  E  T      +  Y             D G QL            
Sbjct: 375 VRNEL-FAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDND 433

Query: 292 ---------------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                          ++ +A   F ++ + D++SW +MI+ +S+HG   +   +F  M+ 
Sbjct: 434 LILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVD 493

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           SGT P+ +TF+GVLS CSHAGL+ +G + FN MS  +  +P  EHY C+ ++L RAG++K
Sbjct: 494 SGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMVNLLGRAGKLK 553

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRL-HGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           EA  ++  +P  ER+H + GALLG C     +  +A     R++EL P ++ A+VL  N+
Sbjct: 554 EAEELILGLPL-ERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNAPAHVLLCNI 612

Query: 456 HAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
           +AA G+  E  ++RK+M  + VKKV   S I + G+ H  L+
Sbjct: 613 YAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFLS 654



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/507 (25%), Positives = 224/507 (44%), Gaps = 85/507 (16%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+++ + R+  + +A ALF  MPE  RN V+ +A++ G ++ GR+ EA K+F+E+ E NV
Sbjct: 15  SLLSKYSRSGFVDEARALFDIMPE--RNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNV 72

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----- 144
            SWTS++ G   A ++ E + LF+ MP   +NVVSW  +++G   NG +    ++     
Sbjct: 73  VSWTSMLCGLADAGKICEAKSLFEEMP--DRNVVSWNAMIVGLIRNGDLEAARMVFDESP 130

Query: 145 -----SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
                SW  M  G   N   + AR  F +M +++++ W +M++ Y  AG + +   LF  
Sbjct: 131 VKNAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRT 190

Query: 200 MPQRNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           MP+RN+ +W AMI  +  NG  E A +  L +   +   PN  T  S+  +C G+  + L
Sbjct: 191 MPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRL 250

Query: 259 AHALAIRL---GFEQE--------------TSLTYKCTCHYVF----------------- 284
              L  RL   G + +              +S+ +    HY+F                 
Sbjct: 251 GKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMIN 310

Query: 285 -----------------------WDWGFQLD-------VNSARLAFERLEAKDVVSWTAM 314
                                    W   +D       V+ A   F  +  KD V+WT M
Sbjct: 311 GYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTM 370

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  +  +    +   LF+ ML  G +P   T+  +         +++GR+   ++++   
Sbjct: 371 ISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLS 430

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
                   S L  +  + G+++ A R+ S+M  H  D +   +++     HG    A  +
Sbjct: 431 DNDLILENS-LISMYAKCGEIRNAYRIFSQMISH--DLISWNSMIMGFSHHGLANEALEV 487

Query: 435 GERLIE--LQPSS-SGAYVLSANVHAA 458
            E +++    P+S +   VLSA  HA 
Sbjct: 488 FEAMVDSGTHPNSVTFLGVLSACSHAG 514



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P   IV W ++++ Y  +G + +A  LF++MP+RN  ++NA++    + G    AMKL  
Sbjct: 6   PLSRIVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFE 65

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            M +     N  + TS+L          LA A  I    E ++        + V W+   
Sbjct: 66  EMPER----NVVSWTSMLCG--------LADAGKI---CEAKSLFEEMPDRNVVSWNAMI 110

Query: 290 -----QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  D+ +AR+ F+    K+  SW  MI  Y+ +G   +   LF  M       + I
Sbjct: 111 VGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEM----EDRNVI 166

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           T+  ++S    AG VE+G   F  M +
Sbjct: 167 TWTSMVSGYCRAGEVEEGYHLFRTMPK 193


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 269/515 (52%), Gaps = 54/515 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G ++ A KLFDEM          MI+ + +  +  +A  LF  M + +  RN++  + MI
Sbjct: 76  GPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMI 135

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--- 122
            G+ K G +  AR  FD++ E +V SW +++SGY +    +E  RLF+ M L   NV   
Sbjct: 136 TGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPD 194

Query: 123 -VSWTTVVLGCAHNG-------LIAKLE--------------VISWTTMCTGLERNAMTK 160
             +W TV+  C+  G       ++ KL+              ++     C  LE      
Sbjct: 195 ETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEA----- 249

Query: 161 LAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
            A + F Q+     +  V WNAMI+AY   G++  A  LF+ MPQR+  +WN+MI  Y +
Sbjct: 250 -AHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQ 308

Query: 218 NGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAH-ALAIRLGFEQETSL 274
           NG    A+KL   M  S     P+E T  S+ ++C  + E  L + A++I      + S+
Sbjct: 309 NGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISI 368

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           +   +   ++   G   D   A L F+ +  +D+VS+  +I  ++ HGHG +   L ++M
Sbjct: 369 SVYNSLINMYSRCGSMQD---AVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKM 425

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G +PD IT++ +L+ CSHAGL+++G++ F  +       P  +HY+C+ D+L RAG+
Sbjct: 426 KEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF-----PDVDHYACMIDMLGRAGR 480

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EAM+++  MP  PH     + G+LL A  +H  V + +    +L +++P +SG Y L 
Sbjct: 481 LEEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALL 537

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           +N++A+ G W E  +VR  M ++ VKK    S +E
Sbjct: 538 SNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 572



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 181/389 (46%), Gaps = 53/389 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R+    + ++  Y K G ++ ARK+FDE+ +  V  W  +ISGY+K    +E   LF  M
Sbjct: 60  RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 119

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   +NV++WTT++ G A  G +                     K AR YF +MP + 
Sbjct: 120 GDQEISRNVITWTTMITGHAKKGNL---------------------KTARMYFDKMPERS 158

Query: 174 IVAWNAMITAYVDAGNMAQASELFN--LMP---QRNVWTWNAMIDRYARNGPEGAAMKLL 228
           +V+WNAM++ Y   G   +   LFN  L P   Q +  TW  +I   +  G    +  ++
Sbjct: 159 VVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIV 218

Query: 229 -NLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
             L  +  F PN    T++L     C G LE   AH +     FEQ     Y+ +   V 
Sbjct: 219 RKLDDKVGFRPNYFVKTALLDMHAKC-GNLE--AAHKI-----FEQLGVYKYRSS---VP 267

Query: 285 WD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-- 337
           W+     +    D+ SA+  F+++  +D VSW +MI  Y+ +G  F+  +LF  M+ S  
Sbjct: 268 WNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSED 327

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KPDE+T V V S C H G +  G    +++ +    +     Y+ L ++  R G +++
Sbjct: 328 SRKPDEVTMVSVFSACGHLGELGLGNWAVSIL-KVNHIQISISVYNSLINMYSRCGSMQD 386

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHG 426
           A+ +  +M    RD V    L+     HG
Sbjct: 387 AVLIFQEMAT--RDLVSYNTLISGFAEHG 413



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 39/270 (14%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D    N ++  Y   G +  A +LF+ MP R V  WN MI  Y + G E  A  L ++
Sbjct: 59  DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 118

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M       N  T T+++T           HA                            +
Sbjct: 119 MGDQEISRNVITWTTMIT----------GHAK---------------------------K 141

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGV 349
            ++ +AR+ F+++  + VVSW AM+  Y+  G   +  RLF  ML  G  +PDE T+  V
Sbjct: 142 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 201

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S CS  G           +    GF+P     + L D+  + G ++ A ++  ++  ++
Sbjct: 202 ISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 261

Query: 410 -RDHVVLGALLGACRLHGDVRMADYIGERL 438
            R  V   A++ A    GD+  A ++ +++
Sbjct: 262 YRSSVPWNAMISAYARVGDLPSAKHLFDKM 291



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 27/238 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA- 60
           S +   G +  A  LFD+M Q D VS  SMI  + +N +  KA  LF  M  S+ +    
Sbjct: 273 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 332

Query: 61  ESAMIDGYVKAGRVDE------ARKVFDEIY-EGNVYSWTSLISGYFKARQVDEGRRLFD 113
           E  M+  +   G + E      A  +    + + ++  + SLI+ Y +   + +   +F 
Sbjct: 333 EVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 392

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            M    +++VS+ T++ G A +G               G+E   +    +E  ++    D
Sbjct: 393 EMA--TRDLVSYNTLISGFAEHG--------------HGMESIELLSKMKEDGIE---PD 433

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            + + A++TA   AG + +   LF  +   +V  +  MID   R G    AMKL+  M
Sbjct: 434 RITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSM 491


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 255/510 (50%), Gaps = 67/510 (13%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +  + +I  Y + GR  EARKVFD++   N+YSW  +++GY K   V+  R+LFDRM   
Sbjct: 99  IVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM--M 156

Query: 119 LKNVVSWTTVVLGCAHNG-----------------------------LIAKLE------- 142
            K+VVSW T+VL  A  G                             L  KL+       
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 143 -------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
                        ++  +++     +    + AR  F +M  KDI AW  +++ Y   G+
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           M  ASELF+ MP++N  +W+A+I  YARN     A+     M +    P + T +S L +
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 250 CE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C     +      H   IR  F   T +       Y     G    + ++   F  +  K
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYS--KCGM---LEASCCVFHLMGNK 391

Query: 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            DVV W  MI A + +GHG +  ++F  M++SG KPD ITF+ +LS CSH+GLV++G + 
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRF 451

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M+  +G  P  EHY+CL D+L RAG   E +  +  M     D  V  ALLG CR+H
Sbjct: 452 FKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDR-VWSALLGVCRIH 510

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            ++ +   + ER+IEL+P SS AYV  A+++A  G+W+   +VR+ M E+ ++K    S 
Sbjct: 511 NNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISW 570

Query: 485 IEVKGKDHTLLA-----PMREMGYVVLKEV 509
           I+V  K H+ +A     P++E  Y++L+++
Sbjct: 571 IDVGNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 144/339 (42%), Gaps = 77/339 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------------------ 49
           G V  A KLFD M + D VS  +++  + +     +A  L+R                  
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202

Query: 50  ----AMPESQ---------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                + E Q                N+V  S+++D Y K G +  AR +FDE+   +++
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIH 262

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL------------- 137
           +WT+++SGY K   ++    LF +MP   KN VSW+ ++ G A N L             
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMP--EKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 138 --IAKLEVISWTTMCTGLERNAMTK-------LAREYFVQMPNKDIVAWNAMITAYVDAG 188
             I   +    + +C      A+         L R YF      + +  +++I  Y   G
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYF----RCNTIVVSSLIDMYSKCG 376

Query: 189 NMAQASELFNLM-PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
            +  +  +F+LM  +++V  WN MI   A+NG    AM++ N M +S   P+  T   IL
Sbjct: 377 MLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVIL 436

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           ++C        +H+  ++ G     ++TY    H VF D
Sbjct: 437 SAC--------SHSGLVQEGLRFFKAMTYD---HGVFPD 464


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 253/486 (52%), Gaps = 50/486 (10%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++  ++ ++  Y++ G +  AR++FD + + +  S+ S+I GY K   V   R LF
Sbjct: 152 EIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELF 211

Query: 113 DRMPLKLKNVVSWTTVVLGCAHN--GL---------IAKLEVISWTTMCTGLERNAMTKL 161
           D MP++ KN++SW +++ G A +  GL         + K ++ISW +M  G  +    + 
Sbjct: 212 DVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMEN 271

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A   F QMP +D+V+W  M+  Y   G +  A  LF+ MP+R+V + NAM+  Y +NG  
Sbjct: 272 AHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHL 331

Query: 222 GAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
             A+   + M   +   P+  T    L+            A+A    F++  +L      
Sbjct: 332 MEALNFFHDMLSRKELFPDNATLLITLS------------AIAQLGHFDEGVAL------ 373

Query: 281 HYVFWDWGFQLD----------------VNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           H    D GF L                 +++A   FE ++ K +  W A+I   + HG G
Sbjct: 374 HCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLG 433

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
              F LF  M K   KPD+ITF+GVL+ C+HAGLV++G   F LM R +  +P+ +HY C
Sbjct: 434 EVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGC 493

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + DIL RAG V+EA + V KMP    D VV   LL ACR H +  + + + + LI +   
Sbjct: 494 MVDILGRAGHVEEAKKFVEKMPIEPND-VVWRTLLSACRNHENFTIGEPVAKHLISVDSY 552

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMREMGY 503
           +  +YVL +N++A  G W++  ++R  M++R +KK+   SQIE++G  H     +R+  +
Sbjct: 553 NPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFF--VRDKSH 610

Query: 504 VVLKEV 509
             ++E+
Sbjct: 611 PQVREI 616



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 165/343 (48%), Gaps = 40/343 (11%)

Query: 8   GKVKEATKLFD--EMSQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G VK A +LFD   M Q + +S  SMI+ + R+ + L  A  LF  MP  +R++++ ++M
Sbjct: 202 GMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMP--KRDLISWNSM 259

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDG VK G+++ A  +F+++ + +V SW +++ GY K  ++D  R LFD MP   ++V+S
Sbjct: 260 IDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMP--ERDVIS 317

Query: 125 WTTVVLGCAHNGLIAKLEVIS-WTTMCTGLE---RNAMTKLAREYFVQMPNKDI-VAWN- 178
              ++ G   NG +  +E ++ +  M +  E    NA   +      Q+ + D  VA + 
Sbjct: 318 CNAMMAGYVQNGHL--MEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHC 375

Query: 179 ---------------AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
                          A+I  Y   G++  A  +F  +  +++  WNA+I   A +G    
Sbjct: 376 YIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEV 435

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTC 280
           A +L   M +    P++ T   +L +C   G++ E ++   L  R+   +     Y C  
Sbjct: 436 AFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMV 495

Query: 281 HYVFWDWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNH 321
             +    G    V  A+   E+  +E  DVV W  ++ A  NH
Sbjct: 496 DIL----GRAGHVEEAKKFVEKMPIEPNDVV-WRTLLSACRNH 533



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 126/298 (42%), Gaps = 47/298 (15%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENML 258
           Q N + WNA+I  ++       A  + NLM ++    ++ + + +L +C   G++ E M 
Sbjct: 84  QDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQ 143

Query: 259 AHALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLD---------------- 292
            H L  R+    +  L     C Y+           +D   + D                
Sbjct: 144 IHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGM 203

Query: 293 VNSARLAFE--RLEAKDVVSWTAMILAYSNHGHGFQV-FRLFARMLKSGTKPDEITFVGV 349
           V SAR  F+   +E K+++SW +MI  Y+    G +V + LF  M     K D I++  +
Sbjct: 204 VKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEM----PKRDLISWNSM 259

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  C   G +E     FN M      K     ++ + D   + G++  A  +  +MP  E
Sbjct: 260 IDGCVKCGKMENAHHLFNQMP-----KRDVVSWANMVDGYAKLGEIDIARGLFDEMP--E 312

Query: 410 RDHVVLGALLGACRLHGDVRMA-DYIGERLI--ELQPSSSGAYVLSANVHAARGEWDE 464
           RD +   A++     +G +  A ++  + L   EL P ++   +++ +  A  G +DE
Sbjct: 313 RDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNA-TLLITLSAIAQLGHFDE 369


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 175/607 (28%), Positives = 285/607 (46%), Gaps = 107/607 (17%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-----PESQ- 55
           S +   G+++EA ++F+EM +PD VS  +MI  + +      A  +FR M     P +Q 
Sbjct: 87  SGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQF 146

Query: 56  --RNIVAESA-----------------------------MIDGYVKAGRVDEARKVFDEI 84
              N++A  A                             +++ Y K+G    A+ VFD +
Sbjct: 147 TLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL------- 137
              +  SW ++IS + ++  VD  +  F++M  +  +VVSW  ++ G   +G        
Sbjct: 207 KLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIER--DVVSWNAMISGYNQHGFDREALDI 264

Query: 138 -----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQ------------------ 168
                        K  + S  + C  LE   + K    + ++                  
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYS 324

Query: 169 ----------------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
                           + N D++A+ A++  YV  G++  A  +F+ +  R+V  W AMI
Sbjct: 325 KSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMI 384

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFE 269
             Y +NG    AM+L   M +    PN  T  ++L+    +         HA A R G  
Sbjct: 385 VGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNA 444

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVF 328
              S++      Y          +N AR  F  +  K D ++WT+MI+A + HG G +  
Sbjct: 445 SSVSVSNALITMY-----AKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEAL 499

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF RML++G KPD IT+VGVLS C+H GLVE+GR  +NLM  A+   P   HY+C+ D+
Sbjct: 500 TLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDL 559

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
             RAG ++EA   +  MP  E D +  G+LL +C++H +V +A+   ERL+ ++P +SGA
Sbjct: 560 FGRAGLLQEAHAFIENMPI-EPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGA 618

Query: 449 YVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMG 502
           Y   ANV++A G+W+  A +RK M ++ VKK   FS +++K K H       L P R+  
Sbjct: 619 YSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAI 678

Query: 503 YVVLKEV 509
           Y ++ ++
Sbjct: 679 YEMMAKI 685



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 214/470 (45%), Gaps = 57/470 (12%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +F  MP   +++ + + ++ GY K GR++EA +VF+E+ E +  SWT++I GY +  
Sbjct: 67  AHRVFDEMP--VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMG 124

Query: 104 QVDEGRRLF-----DRMP---LKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTTMCT 151
           Q +    +F     D +P     L NV++    V    +G   +  + K  + S+ ++  
Sbjct: 125 QFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVAN 184

Query: 152 GL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            L     ++     A+  F +M  K   +WN MI++++ +G +  A   F  M +R+V +
Sbjct: 185 SLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVS 244

Query: 208 WNAMIDRYARNGPEGAAMKLLN-LMFQSRFMPNETTCTSILTSCEGMLENM----LAHAL 262
           WNAMI  Y ++G +  A+ + + ++  S   P++ T  S L++C   LEN+      HA 
Sbjct: 245 WNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACAN-LENLKLGKQIHAH 303

Query: 263 AIRLGF---------------------------EQETSLTYKCTCHYVFWDWGFQL-DVN 294
            IR  F                           EQ               D   +L D+N
Sbjct: 304 IIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDIN 363

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F+ L  +DVV+WTAMI+ Y  +G       LF  M+K G KP+  T   +LS  S
Sbjct: 364 PARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSS 423

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               ++ GR+     +R+ G        + L  +  ++G + +A R V  +   +RD + 
Sbjct: 424 SLASLDHGRQIHASATRS-GNASSVSVSNALITMYAKSGSINDA-RWVFNLIHWKRDTIT 481

Query: 415 LGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGE 461
             +++ A   HG    A  + ER++E  ++P   +   VLSA  H    E
Sbjct: 482 WTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVE 531



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 155/372 (41%), Gaps = 36/372 (9%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG 131
           G+   AR +   ++ G V+   +L++ Y K   + +  R+FD MP+K             
Sbjct: 32  GKSIHARIIKAGLHLG-VFLMNNLMNFYAKTGFIYDAHRVFDEMPVK------------- 77

Query: 132 CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
                      V SW  + +G  +    + A   F +MP  D V+W AMI  Y   G   
Sbjct: 78  ----------SVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFE 127

Query: 192 QASELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
            A  +F  M   +V    +T   ++   A     G   K+ + + +       +   S+L
Sbjct: 128 NAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLL 187

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                  + + A  +  R+  +  +S     + H      G    V+ A++ FE++  +D
Sbjct: 188 NMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHM---QSGL---VDLAQVQFEQMIERD 241

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           VVSW AMI  Y+ HG   +   +F++ML  S +KPD+ T    LS C++   ++ G++  
Sbjct: 242 VVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIH 301

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             + R   F       + L  +  ++G V+ A +++ +      D +   ALL      G
Sbjct: 302 AHIIRTE-FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLG 360

Query: 427 DVRMADYIGERL 438
           D+  A  I + L
Sbjct: 361 DINPARRIFDSL 372


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 243/461 (52%), Gaps = 34/461 (7%)

Query: 57   NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--R 114
            ++   +A+I GY     +  ARKVFDE+ E ++ SW SLI GY + R+  E   +F+  R
Sbjct: 829  DLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMR 888

Query: 115  MPLKLKNVVSWTTVVLGCAHNG-------LIAKLE-------VISWTTMCTGLERNAMTK 160
            M     + V+   VVL C   G       +I  +E       V    T+     R +M  
Sbjct: 889  MADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVD 948

Query: 161  LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            LAR  F +M ++++V+WNAMI  Y  AGN+  A +LF+ MP R+V +W +MI  Y++ G 
Sbjct: 949  LARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQ 1008

Query: 221  EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
             G A++L   M  ++  P+E T  S+L++C        AH  A+ +G E       K   
Sbjct: 1009 FGKAVRLFQEMMVTKVKPDEITVASVLSAC--------AHIGALDVG-EAVHEYIRKYDV 1059

Query: 281  HYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
            +   +     +D       V      FE +  +D VSWT++I   + +G       LF+ 
Sbjct: 1060 NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSL 1119

Query: 334  MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
            ML+ G +P   TFVGVL  C+HAG+V+KG + F  M R YG  P  +HY C+ D+L R+G
Sbjct: 1120 MLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSG 1179

Query: 394  QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
             +  A   + +M P + D VV   LL A ++HG++ +A+   ++L+E  PS+SG Y+LS+
Sbjct: 1180 NLGRAYEFIKRM-PMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSS 1238

Query: 454  NVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHT 493
            N +A    W++  ++R+ ME   V K ++ S +E+   D +
Sbjct: 1239 NTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEINDSDSS 1279



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 144/304 (47%), Gaps = 37/304 (12%)

Query: 30   SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
            ++I ++ R   +  A  +F  M +  RN+V+ +AMI GY KAG +  ARK+FD++   +V
Sbjct: 936  TLIDMYGRRSMVDLARRVFDRMRD--RNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDV 993

Query: 90   YSWTSLISGYFKARQVDEGRRLFDRMPL-KLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
             SWTS+IS Y +A Q  +  RLF  M + K+K + ++  +V+  CAH G +   E     
Sbjct: 994  ISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGE----- 1048

Query: 148  TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                     A+ +  R+Y V   N DI   NA+I  Y   G + +   +F  M +R+  +
Sbjct: 1049 ---------AVHEYIRKYDV---NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVS 1096

Query: 208  WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
            W ++I   A NG   +A+ L +LM +    P   T   +L +C        AHA  +  G
Sbjct: 1097 WTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLAC--------AHAGVVDKG 1148

Query: 268  FEQETSL--TYKCTCHYVFWDWGFQLDVNSARL--AFERLE----AKDVVSWTAMILAYS 319
             E   S+   Y  T     +     L   S  L  A+E ++      DVV W  ++ A  
Sbjct: 1149 LEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQ 1208

Query: 320  NHGH 323
             HG+
Sbjct: 1209 VHGN 1212



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 9/192 (4%)

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           +P   I  +N + +  +   N+ +A+ELF  +P+  +  WN MI  +++      A++  
Sbjct: 725 LPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNY 784

Query: 229 NLMFQSRFMPNETTCTSILTSCEGM--LENMLAHALAIRLGFEQETSLTYKCTCHYV-FW 285
           NLM+      N  T   +L +C  +  +     HA  ++LGF+ +  ++      Y  F 
Sbjct: 785 NLMYSQALFGNNLTYPFLLKACARISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFC 844

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
           + GF      AR  F+ +  +D+VSW ++I  Y       +V  +F  M  +  K D +T
Sbjct: 845 ELGF------ARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVT 898

Query: 346 FVGVLSDCSHAG 357
            V V+  C+  G
Sbjct: 899 MVKVVLACTVLG 910



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 61/248 (24%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES--- 54
            +G  G +  A KLFD+M   D +S  SMI+ + +     KA  LF+ M      P+    
Sbjct: 972  YGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITV 1031

Query: 55   ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                          +I   +A+ID Y K G V++   VF+E+ +
Sbjct: 1032 ASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGK 1091

Query: 87   GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAK- 140
             +  SWTS+I+G       D    LF  M   L+  V     ++  V+L CAH G++ K 
Sbjct: 1092 RDSVSWTSVIAGLAVNGSADSALNLFSLM---LREGVRPTHGTFVGVLLACAHAGVVDKG 1148

Query: 141  --------------LEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYV 185
                           E+  +  +   L R+     A E+  +MP + D+V W  +++A  
Sbjct: 1149 LEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQ 1208

Query: 186  DAGNMAQA 193
              GN+  A
Sbjct: 1209 VHGNLHLA 1216



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 27/253 (10%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            +G    V  A ++FD M   + VS  +MI  + +  +L  A  LF  MP   R++++ ++
Sbjct: 941  YGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMP--HRDVISWTS 998

Query: 64   MIDGYVKAGRVDEARKVF----------DEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
            MI  Y +AG+  +A ++F          DEI   +V S  + I        V E  R +D
Sbjct: 999  MISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYD 1058

Query: 114  -RMPLKLKNVVSWTTVVLGCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFV 167
                + + N +       G    GL     + K + +SWT++  GL  N     A   F 
Sbjct: 1059 VNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFS 1118

Query: 168  QMPNKDIV----AWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARN 218
             M  + +      +  ++ A   AG + +  E F  M +    T     +  ++D  +R+
Sbjct: 1119 LMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRS 1178

Query: 219  GPEGAAMKLLNLM 231
            G  G A + +  M
Sbjct: 1179 GNLGRAYEFIKRM 1191


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 269/515 (52%), Gaps = 54/515 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G ++ A KLFDEM          MI+ + +  +  +A  LF  M + +  RN++  + MI
Sbjct: 133 GPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMI 192

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--- 122
            G+ K G +  AR  FD++ E +V SW +++SGY +    +E  RLF+ M L   NV   
Sbjct: 193 TGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPD 251

Query: 123 -VSWTTVVLGCAHNG-------LIAKLE--------------VISWTTMCTGLERNAMTK 160
             +W TV+  C+  G       ++ KL+              ++     C  LE      
Sbjct: 252 ETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEA----- 306

Query: 161 LAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
            A + F Q+     +  V WNAMI+AY   G++  A  LF+ MPQR+  +WN+MI  Y +
Sbjct: 307 -AHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQ 365

Query: 218 NGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAH-ALAIRLGFEQETSL 274
           NG    A+KL   M  S     P+E T  S+ ++C  + E  L + A++I      + S+
Sbjct: 366 NGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISI 425

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           +   +   ++   G   D   A L F+ +  +D+VS+  +I  ++ HGHG +   L ++M
Sbjct: 426 SVYNSLINMYSRCGSMQD---AVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKM 482

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G +PD IT++ +L+ CSHAGL+++G++ F  +       P  +HY+C+ D+L RAG+
Sbjct: 483 KEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF-----PDVDHYACMIDMLGRAGR 537

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EAM+++  MP  PH     + G+LL A  +H  V + +    +L +++P +SG Y L 
Sbjct: 538 LEEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALL 594

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           +N++A+ G W E  +VR  M ++ VKK    S +E
Sbjct: 595 SNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 629



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 181/389 (46%), Gaps = 53/389 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R+    + ++  Y K G ++ ARK+FDE+ +  V  W  +ISGY+K    +E   LF  M
Sbjct: 117 RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 176

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   +NV++WTT++ G A  G +                     K AR YF +MP + 
Sbjct: 177 GDQEISRNVITWTTMITGHAKKGNL---------------------KTARMYFDKMPERS 215

Query: 174 IVAWNAMITAYVDAGNMAQASELFN--LMP---QRNVWTWNAMIDRYARNGPEGAAMKLL 228
           +V+WNAM++ Y   G   +   LFN  L P   Q +  TW  +I   +  G    +  ++
Sbjct: 216 VVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIV 275

Query: 229 -NLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
             L  +  F PN    T++L     C G LE   AH +     FEQ     Y+ +   V 
Sbjct: 276 RKLDDKVGFRPNYFVKTALLDMHAKC-GNLE--AAHKI-----FEQLGVYKYRSS---VP 324

Query: 285 WD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-- 337
           W+     +    D+ SA+  F+++  +D VSW +MI  Y+ +G  F+  +LF  M+ S  
Sbjct: 325 WNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSED 384

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KPDE+T V V S C H G +  G    +++ +    +     Y+ L ++  R G +++
Sbjct: 385 SRKPDEVTMVSVFSACGHLGELGLGNWAVSIL-KVNHIQISISVYNSLINMYSRCGSMQD 443

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHG 426
           A+ +  +M    RD V    L+     HG
Sbjct: 444 AVLIFQEMA--TRDLVSYNTLISGFAEHG 470



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 116/270 (42%), Gaps = 39/270 (14%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D    N ++  Y   G +  A +LF+ MP R V  WN MI  Y + G E  A  L ++
Sbjct: 116 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 175

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M       N  T T+++T           HA                            +
Sbjct: 176 MGDQEISRNVITWTTMIT----------GHAK---------------------------K 198

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGV 349
            ++ +AR+ F+++  + VVSW AM+  Y+  G   +  RLF  ML  G  +PDE T+  V
Sbjct: 199 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 258

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S CS  G           +    GF+P     + L D+  + G ++ A ++  ++  ++
Sbjct: 259 ISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 318

Query: 410 -RDHVVLGALLGACRLHGDVRMADYIGERL 438
            R  V   A++ A    GD+  A ++ +++
Sbjct: 319 YRSSVPWNAMISAYARVGDLPSAKHLFDKM 348



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 27/238 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA- 60
           S +   G +  A  LFD+M Q D VS  SMI  + +N +  KA  LF  M  S+ +    
Sbjct: 330 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 389

Query: 61  ESAMIDGYVKAGRVDE------ARKVFDEIY-EGNVYSWTSLISGYFKARQVDEGRRLFD 113
           E  M+  +   G + E      A  +    + + ++  + SLI+ Y +   + +   +F 
Sbjct: 390 EVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 449

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            M    +++VS+ T++ G A +G               G+E   +    +E  ++    D
Sbjct: 450 EM--ATRDLVSYNTLISGFAEHG--------------HGMESIELLSKMKEDGIE---PD 490

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            + + A++TA   AG + +   LF  +   +V  +  MID   R G    AMKL+  M
Sbjct: 491 RITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSM 548


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 236/481 (49%), Gaps = 68/481 (14%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +I   +++ID Y + G   +D A  +F  + E +V +W S+I G  +  +++   +LFD 
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDE 213

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP +                       +++SW TM  G  +      A E F +MP ++I
Sbjct: 214 MPER-----------------------DMVSWNTMLDGYAKAGEMDRAFELFERMPQRNI 250

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+W+ M+  Y   G+M  A  LF+  P +NV  W  +I  YA  G    A +L   M ++
Sbjct: 251 VSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEA 310

Query: 235 RFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQET-------SLTYKCTCHYVF 284
              P++    SIL +C   GML      HA   R  F   T        +  KC C    
Sbjct: 311 GLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGC---- 366

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D  F  DV S  +A      KDVVSW +MI  ++ HGHG +   LF+RM+  G +PD  
Sbjct: 367 LDAAF--DVFSGMMA-----KKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTY 419

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVG+L  C+HAGLV +GRK F  M + YG  P+ EHY C+ D+L R G +KEA  ++  
Sbjct: 420 TFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRS 479

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M P E + ++LG LL ACR+H DV  A  + E+L +++P+  G Y L +N++A  G+W  
Sbjct: 480 M-PMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMN 538

Query: 465 FAQVRKKM----------------ERRVKKVASFSQIEVKGKD-----HTLLAPMREMGY 503
            A VR +M                E  V +   F Q   K  D       L+  +R++GY
Sbjct: 539 VANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGY 598

Query: 504 V 504
           V
Sbjct: 599 V 599



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 130/261 (49%), Gaps = 31/261 (11%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A  LF  M + D V+  SMI   +R  +L  A  LF  MPE  R++V+ + M+DGY KAG
Sbjct: 176 AMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPE--RDMVSWNTMLDGYAKAG 233

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            +D A ++F+ + + N+ SW++++ GY K   +D  R LFDR P   KNVV WTT++ G 
Sbjct: 234 EMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCP--AKNVVLWTTIIAGY 291

Query: 133 AHNGLI-------AKLE----------VISWTTMCT-----GLERNAMTKLAREYFVQMP 170
           A  G +        K+E          +IS    C      GL +     + R  F    
Sbjct: 292 AEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRF---- 347

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                  NA I  Y   G +  A ++F+ +M +++V +WN+MI  +A +G    A++L +
Sbjct: 348 RCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFS 407

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M    F P+  T   +L +C
Sbjct: 408 RMVPEGFEPDTYTFVGLLCAC 428


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 255/492 (51%), Gaps = 33/492 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+I ++ +N +L  A  +F     S R+ V+ +A+I GY   G +DEAR++FDEI   +V
Sbjct: 168 SLINMYAQNGELVNARLVFDK--SSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDV 225

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW ++ISGY ++ +V+E    F+ M       NV +  +V+  CA +G  + L++ +W 
Sbjct: 226 VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG--SSLQLGNWV 283

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
              + +E   +              +I   N +I  YV  G++ +AS LF  +  +NV +
Sbjct: 284 R--SWIEDRGL------------GSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAI 264
           WN MI  Y        A+ L   M QS   PN+ T  SIL +C   G L+     HA   
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVD 389

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           +     + ++    +   ++   G   D+  A+  F+ +  K + +W AMI  ++ HGH 
Sbjct: 390 KNMKSMKNTVALWTSLIDMYAKCG---DLAVAKRIFDCMNTKSLATWNAMISGFAMHGHT 446

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
                LF+RM   G  PD+ITFVGVL+ C HAGL+  GR+ F+ M + Y   P+  HY C
Sbjct: 447 DTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGC 506

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+  RAG   EA  +V  M   + D  +  +LLGACR+H  + +A+ + + L EL+P 
Sbjct: 507 MIDLFGRAGLFDEAETLVKNM-EMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPE 565

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PM 498
           +  AYVL +N++A  G W++ A++R ++ + R+KKV   S IEV    H  L      P 
Sbjct: 566 NPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQ 625

Query: 499 REMGYVVLKEVD 510
               Y +L E+D
Sbjct: 626 SNEIYKMLDEID 637



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 156/352 (44%), Gaps = 33/352 (9%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E N Y++ S+     K R   EG++            V    + LG  HN  +       
Sbjct: 125 EPNEYTFPSIFKSCTKIRGAHEGKQ------------VHAHVLKLGLEHNAFVH------ 166

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
            T++     +N     AR  F +   +D V++ A+IT Y   G + +A ELF+ +P R+V
Sbjct: 167 -TSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDV 225

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-----MLENMLAH 260
            +WNAMI  YA++G    AM     M +++  PN +T  S+L++C        L N +  
Sbjct: 226 VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRS 285

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
            +  R G      L       YV        D+  A   FE+++ K+VVSW  MI  Y++
Sbjct: 286 WIEDR-GLGSNIRLVNGLIDMYVKCG-----DLEEASNLFEKIQDKNVVSWNVMIGGYTH 339

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY-GFKPRA 379
                +   LF RM++S   P+++TF+ +L  C++ G ++ G+     + +     K   
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             ++ L D+  + G +  A R+   M  + +      A++    +HG    A
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCM--NTKSLATWNAMISGFAMHGHTDTA 449



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 64/310 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +   G++  A  +FD+ S  D VS  ++IT +     L +A  LF  +P   R++V+ 
Sbjct: 171 NMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP--VRDVVSW 228

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYE--------------------------GN-VYSW-- 92
           +AMI GY ++GRV+EA   F+E+                            GN V SW  
Sbjct: 229 NAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIE 288

Query: 93  -----------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN------ 135
                        LI  Y K   ++E   LF++  ++ KNVVSW  ++ G  H       
Sbjct: 289 DRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEK--IQDKNVVSWNVMIGGYTHMSCYKEA 346

Query: 136 -GLIAKL----------EVISWTTMCTGLERNAMTKLAREYF---VQMPNKDIVAWNAMI 181
            GL  ++            +S    C  L    + K    Y    ++     +  W ++I
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLI 406

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++A A  +F+ M  +++ TWNAMI  +A +G    A+ L + M    F+P++ 
Sbjct: 407 DMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDI 466

Query: 242 TCTSILTSCE 251
           T   +LT+C+
Sbjct: 467 TFVGVLTACK 476



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 29/199 (14%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+++ A  LF  +   N   WN MI   + +     A++    M  S   PNE T  SI 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 248 TSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHY----------VFWDWGFQLD-- 292
            SC    G  E    HA  ++LG E    +       Y          + +D     D  
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 293 --------------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                         ++ AR  F+ +  +DVVSW AMI  Y+  G   +    F  M ++ 
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 339 TKPDEITFVGVLSDCSHAG 357
             P+  T + VLS C+ +G
Sbjct: 256 VTPNVSTMLSVLSACAQSG 274



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D++ A   F+ +   + V W  MI   S+    F     +  M+ SGT+P+E TF  +  
Sbjct: 77  DLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFK 136

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+      +G++    + +  G +  A  ++ L ++  + G++  A  V  K     RD
Sbjct: 137 SCTKIRGAHEGKQVHAHVLK-LGLEHNAFVHTSLINMYAQNGELVNARLVFDK--SSMRD 193

Query: 412 HVVLGALL 419
            V   AL+
Sbjct: 194 AVSFTALI 201


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 234/448 (52%), Gaps = 47/448 (10%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           ++   +++ID Y K G   V+ A K+F E+ E ++ SW S+I G  KA  +   R+LFD 
Sbjct: 155 DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE 214

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M                       A+ + +SW T+  G  +      A   F +MP +++
Sbjct: 215 M-----------------------AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNV 251

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+W+ M++ Y   G+M  A  LF+ MP +N+ TW  +I  +A  G    A  L N M  +
Sbjct: 252 VSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAA 311

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT---YKCTCHY------VFW 285
              P++ T  SIL +C        A +  + LG +   S+     KC+ +       ++ 
Sbjct: 312 GLKPDDGTLISILAAC--------AESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYA 363

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G    V+ A   F  +  +D+VSW  M+   + HGHG +  +LF++M + G KPD++T
Sbjct: 364 KCG---RVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVT 420

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + +L  C+HAG V++G   FN M R +G  P  EHY C+ D+L R G+++EA R+V  M
Sbjct: 421 LIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSM 480

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P    D V+ G LLGACR+H  V +A+ + +RLI L+ S  G Y + +N+ AA G+W+  
Sbjct: 481 PMEPND-VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSV 539

Query: 466 AQVRKKMERR-VKKVASFSQIEVKGKDH 492
           A +R +M+   V+K +  S IE+  + H
Sbjct: 540 ANMRLQMKSTGVQKPSGASSIELDDEVH 567


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/471 (33%), Positives = 243/471 (51%), Gaps = 45/471 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +++  +A++  Y     +D+A KVFDE+ E +V SWT+L+ GY +A   DE  RLF RM 
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 117 L---KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL------- 161
           +      N V+    V      GL+A   ++       G+ R     NA+  +       
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 162 --AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-N 218
             ARE F  M  KD+ +W +M+ AY   G++  A +LF  MP+RNV +W+ MI  Y++ N
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---------LENMLAH---ALAIRL 266
            PE  A+ L   M  +   P + T  S+L++C  +          EN +      L + L
Sbjct: 357 QPE-EAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL 415

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G      +  KC             DV  A   F+ +  ++VVSW  MI+A++ HG   +
Sbjct: 416 G-NALIDMFAKCG------------DVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEE 462

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             RLF ++      PD+ITF+G+L+ CSH+GLV +GR+ F  M   Y  +PR EHY+C+ 
Sbjct: 463 AIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMI 522

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L + G ++EA  V   M P E D    GALL ACR+HG+V +   + ++L+EL PS S
Sbjct: 523 DLLGKVGLLEEAFEVARGM-PMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDS 581

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLAP 497
           G YVL + ++A++ +WD+   +R  M  R   +   +   + G+   L +P
Sbjct: 582 GIYVLMSQIYASKNKWDQVKMLRMTMRDRGTVLDGIATELLLGEPDPLQSP 632



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 34/273 (12%)

Query: 7   TGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
            G   EA +LF  M      +P+ V+  + ++   +   L     L + + E    R++ 
Sbjct: 222 AGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVN 281

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            ++A++D + K G V  AR+VFD +   +VYSWTS+++ Y K   ++   +LF  MP   
Sbjct: 282 LDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMP--R 339

Query: 120 KNVVSWTTVVLGCAHNGLIAKLE-------------------VISWTTMCTGLERNAMTK 160
           +NVVSW+ ++   A++ L    E                   ++S  + C  L    + +
Sbjct: 340 RNVVSWSCMI--AAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGR 397

Query: 161 LAREYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
              E ++ + NK    +   NA+I  +   G++ +AS+LF+ M +RNV +WN MI  +A 
Sbjct: 398 WIYENYI-VSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +G    A++L   +     +P++ T   +L SC
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASC 489



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 60/391 (15%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLF-----DRMPLKLKN---VVSWTTVVLGCAHNGLIA 139
           N Y   +++ G+ +AR       LF     DR+P   +     V          H G  +
Sbjct: 100 NAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPS 159

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
             E I    +  G             FV    + ++  NA++  Y +  ++  A ++F+ 
Sbjct: 160 GGEAIHCAALKCG-------------FV---GESVLVGNALVHFYANHKSLDDAGKVFDE 203

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCE--GMLE- 255
           MP+R+V +W  ++D YAR G    A +L   M     M PN  T  + +++    G+L  
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263

Query: 256 NMLAHALAIRLGFEQETSLTY-------KCTC----HYVF--------WDWGFQL----- 291
            ++ H      G  +  +L         KC C      VF        + W   +     
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323

Query: 292 --DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D+ SA   F+ +  ++VVSW+ MI AYS      +   LF  M+ +G  P + T V V
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383

Query: 350 LSDCSHAGLVEKGRKTFN--LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           LS C+  G ++ GR  +   ++S   G        + L D+  + G V EA ++  +M  
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLT--VNLGNALIDMFAKCGDVGEASKLFDEMA- 440

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERL 438
            ER+ V    ++ A  +HG    A  + E+L
Sbjct: 441 -ERNVVSWNTMIMAHAVHGQSEEAIRLFEQL 470



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V+ A ++FD M   D  S  SM+  + +  DL  AE LF+ MP  +RN+V+ S 
Sbjct: 290 FGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMP--RRNVVSWSC 347

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           MI  Y +  + +EA  +F E+    V     +  S++S   +   +D GR +++   +  
Sbjct: 348 MIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSN 407

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K  +   TV LG A   + AK         C  +        A + F +M  +++V+WN 
Sbjct: 408 KIGL---TVNLGNALIDMFAK---------CGDVGE------ASKLFDEMAERNVVSWNT 449

Query: 180 MITAYVDAGNMAQASELFNLMPQRNV 205
           MI A+   G   +A  LF  +   N+
Sbjct: 450 MIMAHAVHGQSEEAIRLFEQLKGENI 475


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 226/440 (51%), Gaps = 40/440 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    + +ID Y   G V +A K+F E++E NV +WTS+I+GY  +  +   RRLFD  P
Sbjct: 170 NPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAP 229

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       +V+ W  M +G         AR+ F +MPN+D++ 
Sbjct: 230 ER-----------------------DVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMF 266

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSR 235
           WN ++  Y   GN+     LF  MP+RN+++WNA+I  YA NG     +     M  +S 
Sbjct: 267 WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD 326

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQ 290
             PN+ T  ++L++C        A   A+ LG     + + + L           D   +
Sbjct: 327 VPPNDATLVTVLSAC--------ARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 378

Query: 291 LDV-NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +  +A   F  ++ KD++SW  +I   + H  G     LF +M  +G KPD ITF+G+
Sbjct: 379 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+H GLVE G   F  M+  Y   P+ EHY C+ D+L RAG++++AM  V KMP  E
Sbjct: 439 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPV-E 497

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D V+   LLGACR++ +V +A+   +RLIEL+P +   YV+ +N++   G W++ A+++
Sbjct: 498 ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLK 557

Query: 470 KKM-ERRVKKVASFSQIEVK 488
             M +   KK+   S IEV 
Sbjct: 558 VAMRDTGFKKLPGCSLIEVN 577



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 130/278 (46%), Gaps = 25/278 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V +A K+F EM + + V+  SMI  ++ + DL  A  LF   PE  R++V  + 
Sbjct: 181 YSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPE--RDVVLWNI 238

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GY++ G + EARK+F E+   +V  W +++ GY     V+    LF+ MP   +N+ 
Sbjct: 239 MVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMP--ERNIF 296

Query: 124 SWTTVVLGCAHNGLIAKL------------------EVISWTTMCTGLERNAMTKLAREY 165
           SW  ++ G AHNGL  ++                   +++  + C  L    + K    Y
Sbjct: 297 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 356

Query: 166 FVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
                 K ++   NA++  Y   G +  A  +F  M  +++ +WN +I   A +     A
Sbjct: 357 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 416

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAH 260
           + L   M  +   P+  T   IL +C   G++E+  A+
Sbjct: 417 LNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 454



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 124/325 (38%), Gaps = 59/325 (18%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-- 237
           ++T       M  A +LF+ +P  N+  WN+M   YA++    +  +++ L FQ + M  
Sbjct: 76  LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS---ESYREVVFLFFQMKGMDI 132

Query: 238 -PNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE----TSL------------TYK 277
            PN  T   +L SC     ++E    H   I+ GF       T+L             YK
Sbjct: 133 RPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYK 192

Query: 278 CTC-----HYVFW-----DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
             C     + V W      +    D+ SAR  F+    +DVV W  M+  Y   G   + 
Sbjct: 193 IFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEA 252

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHY 382
            +LF  M       D + +  VL   +  G VE     F  M     F   A      H 
Sbjct: 253 RKLFHEM----PNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 308

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
               ++L   G  K  M   S +PP++     L  +L AC   G + +  +     + + 
Sbjct: 309 GLFFEVL---GSFKR-MLSESDVPPND---ATLVTVLSACARLGALDLGKW-----VHVY 356

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQ 467
             SSG   L  NV+      D +A+
Sbjct: 357 AESSG---LKGNVYVGNALMDMYAK 378


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 247/462 (53%), Gaps = 30/462 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  YV+ G +  AR++FDE    +V +WT++I+GY +   +DE   LF+ M 
Sbjct: 186 DLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSML 245

Query: 117 LK--LKNVVSWTTVVLGCAHNG-----LIAKLEVISWTTMCTGLERNAMTKL-------- 161
                 N V+   ++  C+  G           +      C+    NAM  +        
Sbjct: 246 SSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLT 305

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            ARE F  M  +D+ +W +++  Y   G++  A +LF+ MP+RN+ +WNAMI  Y++N  
Sbjct: 306 TAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQ 365

Query: 221 EGAAMKLL-NLMFQSRFMPNETTCTSILTS-----CEGMLENMLAHALAIRLGFEQETSL 274
              A++L  N++     +P E T   +L++     C  M + +  + +  ++G +   SL
Sbjct: 366 PMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVN-KIGIQ--VSL 422

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             K     ++   G    +++A   F  +  K++VSW +MI AY+++GH  +   LF +M
Sbjct: 423 ILKNAVMDMYAKCG---SIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQM 479

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           + SG KPD ITF+GVLS CS+ G V +G+  F  M   +G +P+ EHY+C+ D+L R G 
Sbjct: 480 IGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGL 539

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +KEA  ++S+M P E      GALL ACR HG+V MA   GE+L+EL P  SG Y L AN
Sbjct: 540 LKEAYELISRM-PMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLAN 598

Query: 455 VHAARGEW-DEFAQVRKKMERRVKKVASFSQIEVKGKDHTLL 495
           + A   +W D     R   ER VKKV   S IE++GK H  L
Sbjct: 599 ICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFL 640



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 63/303 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------ 54
           TG +  A ++FDE S  D V+  +MI  + RN+ L +A ALF +M  S            
Sbjct: 200 TGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIAL 259

Query: 55  ---------------------QRNIVAE----SAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                +++I       +AM+D YVK G +  AR++F+ +   +V
Sbjct: 260 LSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDV 319

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN-------------- 135
           +SWTSL++GY K   +   R+LFD MP   +N+VSW  ++ G + N              
Sbjct: 320 FSWTSLLNGYAKNGDLGSARKLFDEMP--ERNIVSWNAMIAGYSQNSQPMEALELFHNMV 377

Query: 136 ---GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDA 187
              GL+   + +      +G  +    ++ +E      NK      ++  NA++  Y   
Sbjct: 378 DVVGLVPTEDTLVCVLSASG--QLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKC 435

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A++LF+ MP++N+ +WN+MI  YA  G    A+ L + M  S   P+  T   +L
Sbjct: 436 GSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVL 495

Query: 248 TSC 250
           ++C
Sbjct: 496 SAC 498



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 185/443 (41%), Gaps = 53/443 (11%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           SC+SM  +      +     + +  P S+  ++A  A+ D    +G +  A  +FD+   
Sbjct: 61  SCSSMFQLKQIQAHITCTGLMNQIFPASR--LLAFCALSD----SGDIHYAHLIFDQTEL 114

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            N + W ++I GY KA     G   F +M ++ +      + V      G  A+ +++  
Sbjct: 115 PNCFFWNTMIKGYCKANHPSMGFSFFRQM-IRNRAEFDSGSFVFALKACGQFAE-KIVGM 172

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                  +R   + L    FVQ         N +I  YV+ G +  A ++F+    ++V 
Sbjct: 173 AVHSVIWKRGFDSDL----FVQ---------NGLIQNYVETGCLGFARQMFDESSVKDVV 219

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           TW  MI+ YARN     A+ L N M  S   PNE T  ++L++C    ++ +   L   +
Sbjct: 220 TWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHI 279

Query: 267 GFEQET----------SLTYKCTC----HYVF--------WDWGFQL-------DVNSAR 297
             +  T           +  KC C      +F        + W   L       D+ SAR
Sbjct: 280 RRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSAR 339

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHA 356
             F+ +  +++VSW AMI  YS +    +   LF  M+   G  P E T V VLS     
Sbjct: 340 KLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQL 399

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G +E G++         G +      + + D+  + G +  A ++   MP  E++ V   
Sbjct: 400 GCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP--EKNLVSWN 457

Query: 417 ALLGACRLHGDVRMADYIGERLI 439
           +++ A   +G  + A  + +++I
Sbjct: 458 SMISAYASYGHAKKALTLFDQMI 480


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 164/532 (30%), Positives = 262/532 (49%), Gaps = 69/532 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----------------- 51
           +V+ A KLFDE+   D +S  SMI+ ++ N    K   LF  M                 
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259

Query: 52  --------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                   + +   + ++D Y K+G ++ A +VF+ + E +V S
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 319

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           WTS+I+GY +    D   RLF  M  +    ++ + TT++  CA                
Sbjct: 320 WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACA---------------- 363

Query: 150 CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           CTGL  N   K    Y  +     D+   NA++  Y   G+M  A  +F+ M  +++ +W
Sbjct: 364 CTGLLENG--KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSW 421

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAHALAIR 265
           N MI  Y++N     A+ L   M Q    PN  T   IL +C  +  LE     H   +R
Sbjct: 422 NTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILR 480

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            GF  +  +       Y+         +  ARL F+ +  KD+VSWT MI  Y  HG+G 
Sbjct: 481 NGFSLDRHVANALVDMYLKCG-----ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGS 535

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +    F  M  SG +PDE++F+ +L  CSH+GL+++G   FN+M      +P++EHY+C+
Sbjct: 536 EAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACI 595

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG + +A + + KM P E D  + GALL  CR++ DV++A+ + E + EL+P +
Sbjct: 596 VDLLARAGNLSKAYKFI-KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN 654

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +G YVL AN++A   +W+E  ++R+++ RR ++K    S IE+KGK H  + 
Sbjct: 655 TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 706



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 205/462 (44%), Gaps = 54/462 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA-----ES 62
           G ++ A +L ++  +PD +   +  +V     DL   +   R     Q N V       S
Sbjct: 82  GNLRRAMELINQSPKPD-LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGS 140

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK------------------ARQ 104
            ++  YV  G + E R++FD++    V+ W  L++GY K                   R+
Sbjct: 141 KLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR 200

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK--------------LEVISWTTMC 150
           V+  R+LFD   L  ++V+SW +++ G   NGL  K               ++ +  ++ 
Sbjct: 201 VESARKLFDE--LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258

Query: 151 TGLERNAMTKLARE---YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            G     M  L R    Y ++    K++   N ++  Y  +GN+  A ++F  M +R+V 
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL--TSCEGMLENMLAHALAI 264
           +W +MI  YAR G    +++L + M +    P+  T T+IL   +C G+LEN       I
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           +   + ++ L        ++   G   D +S    F  ++ KD+VSW  MI  YS +   
Sbjct: 379 KEN-KMQSDLFVSNALMDMYAKCGSMGDAHS---VFSEMQVKDIVSWNTMIGGYSKNSLP 434

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF  M +  +KP+ IT   +L  C+    +E+G++    + R  GF       + 
Sbjct: 435 NEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRN-GFSLDRHVANA 492

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L D+  + G +  A R++  M P E+D V    ++    +HG
Sbjct: 493 LVDMYLKCGALGLA-RLLFDMIP-EKDLVSWTVMIAGYGMHG 532


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/514 (31%), Positives = 268/514 (52%), Gaps = 53/514 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G ++ A KLFDEM          MI+ + +  +  +A  LF  M + +  RN++  + MI
Sbjct: 148 GPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMI 207

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--- 122
            G+ K G +  AR  FD++ E +V SW +++SGY +    +E  RLF+ M L   NV   
Sbjct: 208 TGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPD 266

Query: 123 -VSWTTVVLGCAHNG-------LIAKLE--------------VISWTTMCTGLERNAMTK 160
             +W TV+  C+  G       ++ KL+              ++     C  LE      
Sbjct: 267 ETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEA----- 321

Query: 161 LAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
            A + F Q+     +  V WNAMI+AY   G++  A  LF+ MPQR+  +WN+MI  Y +
Sbjct: 322 -AHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQ 380

Query: 218 NGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAH-ALAIRLGFEQETSLT 275
           NG    A+KL   M  S    P+E T  S+ ++C  + E  L + A++I      + S++
Sbjct: 381 NGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISIS 440

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
              +   ++   G   D   A L F+ +  +D+VS+  +I  ++ HGHG +   L  +M 
Sbjct: 441 VYNSLISMYSRCGSMQD---AVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMK 497

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G +PD IT++ +L+ CSHAGL+ +G++ F  +       P  +HY+C+ D+L RAG++
Sbjct: 498 EDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKF-----PDVDHYACMIDMLGRAGRL 552

Query: 396 KEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           +EAM+++  MP  PH     + G+LL A  +H  V + +    +L +++P +SG YVL +
Sbjct: 553 EEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLS 609

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           N++A+ G W +  +VR  M ++ VKK    S +E
Sbjct: 610 NIYASAGRWKDGDKVRDTMRKQGVKKTTGLSWLE 643



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 180/388 (46%), Gaps = 52/388 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R+    + ++  Y K G ++ ARK+FDE+ +  V  W  +ISGY+K    +E   LF  M
Sbjct: 132 RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 191

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   +NV++WTT++ G A  G +                     K AR YF +MP + 
Sbjct: 192 GDQEISRNVITWTTMITGHAKKGNL---------------------KTARMYFDKMPERS 230

Query: 174 IVAWNAMITAYVDAGNMAQASELFN--LMP---QRNVWTWNAMIDRYARNGPEGAAMKLL 228
           +V+WNAM++ Y   G   +   LFN  L P   Q +  TW  +I   +  G    +  ++
Sbjct: 231 VVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIV 290

Query: 229 NLMFQS-RFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
             +  +  F PN    T++L     C G LE   AH +     FEQ     Y+ +   V 
Sbjct: 291 RKLDDTVGFRPNYFVKTALLDMHAKC-GNLE--AAHKI-----FEQLGVYKYRSS---VP 339

Query: 285 WD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-G 338
           W+     +    D+ SAR  F+++  +D VSW +MI  Y+ +G   +  +LF  M+ S  
Sbjct: 340 WNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSED 399

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
           +KPDE+T V V S C H G +  G    +++   +  +     Y+ L  +  R G +++A
Sbjct: 400 SKPDEVTMVSVFSACGHLGELGLGNWAVSILKENH-IQISISVYNSLISMYSRCGSMQDA 458

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHG 426
           + +  +M    RD V    L+     HG
Sbjct: 459 VLIFQEMA--TRDLVSYNTLISGFAEHG 484



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 39/270 (14%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D    N ++  Y   G +  A +LF+ MP R V  WN MI  Y + G E  A  L ++
Sbjct: 131 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 190

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M       N  T T+++T           HA                            +
Sbjct: 191 MGDQEISRNVITWTTMIT----------GHAK---------------------------K 213

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGV 349
            ++ +AR+ F+++  + VVSW AM+  Y+  G   +  RLF  ML  G  +PDE T+V V
Sbjct: 214 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTV 273

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S CS  G           +    GF+P     + L D+  + G ++ A ++  ++  ++
Sbjct: 274 ISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 333

Query: 410 -RDHVVLGALLGACRLHGDVRMADYIGERL 438
            R  V   A++ A    GD+  A ++ +++
Sbjct: 334 YRSSVPWNAMISAYARVGDLPSARHLFDKM 363



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 26/237 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +  A  LFD+M Q D VS  SMI  + +N +  KA  LF  M  S+ +   E
Sbjct: 345 SAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDE 404

Query: 62  SAMIDGYVKAGRVDE------ARKVFDEIY-EGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             M+  +   G + E      A  +  E + + ++  + SLIS Y +   + +   +F  
Sbjct: 405 VTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQE 464

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M    +++VS+ T++ G A +G               G+E   +    +E  ++    D 
Sbjct: 465 M--ATRDLVSYNTLISGFAEHG--------------HGMESIELLLKMKEDGIE---PDR 505

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           + + A++TA   AG + +   LF  +   +V  +  MID   R G    AMKL+  M
Sbjct: 506 ITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSM 562


>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
 gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 162/536 (30%), Positives = 260/536 (48%), Gaps = 56/536 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A  +FD M   D VS  SMI   +RN  L +A  LF  MP   +N+++ + +I G
Sbjct: 122 GDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMP--LKNVISWNLIIGG 179

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            V  G++D A + F ++   ++ SWT +ISG  +A ++DE R LF+ MP K   V  W  
Sbjct: 180 LVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMPTKDARV--WNA 237

Query: 128 VVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFVQMPNK----- 172
           +++G   NG I   E +          SW  +  G   +     AR+ F++MP+K     
Sbjct: 238 MMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFMEMPDKCQKTW 297

Query: 173 --------------------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                                     +I +W  +I  Y   G +  A E+F  M  ++  
Sbjct: 298 NNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGMAVEIFESMQYKDTT 357

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
            WNA I     N      +KL   M +     ++ T TSILT C  +    L    HAL 
Sbjct: 358 VWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLETLQLGRQTHALI 417

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           ++ GF    +++      Y         +++ A + F  +  +DV+SW +MI  +++HG+
Sbjct: 418 LKEGFNGFVAVSNAMINMYARCG-----NMDCAFMEFSSMSDRDVISWNSMICGFAHHGN 472

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G     +F +M  +  +P+ ITF+GVLS CSH GL++KGR  FN M      +P  EHY+
Sbjct: 473 GEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNECSLRPLIEHYT 532

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMADYIGERLIEL 441
           CL D+  R G + EA+  +++M   E +    V GALLGACR+H +  +    GE+++E 
Sbjct: 533 CLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNYDVGVIAGEKVLEK 592

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +P ++G Y++ A ++   G+ +   ++  +M+   VKK    S IEV    +  L+
Sbjct: 593 EPHNAGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPGCSWIEVNNCGYVFLS 648



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 225/467 (48%), Gaps = 38/467 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G V++A KLFD M Q + V+  +MI  +  N       +LFR MPE  R++ + + +I 
Sbjct: 59  NGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPE--RDVFSYNTVIG 116

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G ++ G VD A+ +FD +   +V SW S+I+G  +   ++E  +LFD MP  LKNV+SW 
Sbjct: 117 GLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMP--LKNVISWN 174

Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++ G  + G +          ++ +++SWT M +GL R      AR  F  MP KD   
Sbjct: 175 LIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMPTKDARV 234

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WNAM+  Y++ G +  A ELF +MP+RN  +WN +++ +  +     A KL        F
Sbjct: 235 WNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKL--------F 286

Query: 237 MPNETTCTSILTSCE-GMLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           M     C     +     + N L    HAL  ++ +    S T     ++   + G  ++
Sbjct: 287 MEMPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGMAVE 346

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +      FE ++ KD   W A I     +  G +  +LF RM++ G   D+ TF  +L+ 
Sbjct: 347 I------FESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTI 400

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CS    ++ GR+T  L+ +  GF       + + ++  R G +  A    S M   +RD 
Sbjct: 401 CSDLETLQLGRQTHALILKE-GFNGFVAVSNAMINMYARCGNMDCAFMEFSSM--SDRDV 457

Query: 413 VVLGALLGACRLHGDVRMADYIGE--RLIELQPSS-SGAYVLSANVH 456
           +   +++     HG+   A  + E  RL  ++P+  +   VLSA  H
Sbjct: 458 ISWNSMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSH 504


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 259/519 (49%), Gaps = 33/519 (6%)

Query: 8   GKVKEATKLFDEMSQPDPV----SCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           G   +A +    M   D V    S AS ++      DL   E +   +  S    ++   
Sbjct: 130 GHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIG 189

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D Y K  R  +AR+VFD + E NV SW SLI+ Y +   V E   LF  M      
Sbjct: 190 TALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFF 249

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER--------NAMTKL---------A 162
            + V+ ++V+  CA  GL A+ E           +R        NA+  +         A
Sbjct: 250 PDEVTLSSVMSACA--GLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           R  F  MP++ +V+  +++  Y  + N+  A  +F+ M ++NV  WN +I  YA+NG E 
Sbjct: 308 RCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCT 279
            A++L   + +    P   T  ++L +C  +    L   AH   ++ GF  +        
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 280 CHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 D   +   ++     FER+ A+D VSW AMI+ Y+ +G       LF RML S 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             PD +T +GVLS C H+GLV++GR+ F+ M+  +G  P  +HY+C+ D+L RAG +KEA
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 547

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             ++  MP  E D V+  +LLGACRLH +V + +    RL EL P +SG YVL +N++A 
Sbjct: 548 EELIKDMPT-EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAE 606

Query: 459 RGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            G+W +  +VR+ M +R V K    S IE+  K +  LA
Sbjct: 607 MGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLA 645



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 207/455 (45%), Gaps = 62/455 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y + GR+ EAR+VFD I   N +S+ +L+S Y +  + DE R LF+ +P    +
Sbjct: 56  NTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIP--DPD 113

Query: 122 VVSWTTVVLGCAHNG---------LIAKLE----VISWTTMCTGLERNAMTKLARE---- 164
             S+  VV   A +G          +A +     V++  +  + L   A  K  R     
Sbjct: 114 QCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQV 173

Query: 165 --YFVQMPNKDIV-AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                + P+ D V    A++  Y        A  +F+ MP+RNV +WN++I  Y +NGP 
Sbjct: 174 HGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPV 233

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR------------- 265
           G A+ L   M  + F P+E T +S++++C G+    E    HA  ++             
Sbjct: 234 GEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNA 293

Query: 266 -LGFEQETSLTYKCTCHY-------------VFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            +    +   T++  C +             +   +    +V  A++ F ++  K+V++W
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAW 353

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             +I AY+ +G   +  RLF ++ +    P   T+  VL+ C +  +++ G++    + +
Sbjct: 354 NVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLK 413

Query: 372 A---YGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               + F P ++ +  + L D+  + G + +  +V  +M    RD+V   A++     +G
Sbjct: 414 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA--RDNVSWNAMIVGYAQNG 471

Query: 427 DVRMADYIGERLI---ELQPSSSGAYVLSANVHAA 458
             + A ++ ER++   E   S +   VLSA  H+ 
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSG 506



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 11/281 (3%)

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           GC     +A  E     T+ +   R    + AR  F  +P ++  ++NA+++AY   G  
Sbjct: 41  GCVLKSPVAG-ETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARN--GPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +A  LF  +P  +  ++NA++   AR+  G  G A++ L  M    F+ N  +  S L+
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C   + +      H L  R     +  +       Y   +         AR  F+ +  
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVD-----ARRVFDAMPE 214

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++VVSW ++I  Y  +G   +   LF  M+ +G  PDE+T   V+S C+      +GR+ 
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQV 274

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              M +    +      + L D+  + G+  EA  +   MP
Sbjct: 275 HAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG + +  K+F+ M+  D VS  +MI  + +N     A  LF  M  S  N   +S  + 
Sbjct: 439 TGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN--PDSVTMI 496

Query: 67  GYVKA----GRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPL 117
           G + A    G VDE R+ F  + E +  +     +T ++    +A  + E   L   MP 
Sbjct: 497 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 556

Query: 118 KLKNVVSWTTVVLGC 132
           +  +V+ W +++  C
Sbjct: 557 EPDSVL-WASLLGAC 570


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 167/565 (29%), Positives = 273/565 (48%), Gaps = 97/565 (17%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA+KLF EM + + +S A+MIT   R   +  AE L+   P   R+ V  +A+I GY+
Sbjct: 190 IGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYL 249

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           K GR++EA ++F+ + E +V SW+S++ GY K  ++   R LF+RMP   +NVV+WT ++
Sbjct: 250 KVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP--ERNVVTWTAMI 307

Query: 130 -----LGCAHNGL----------IAKLEVISWTTM---CT------------------GL 153
                +GC   G             K+   + T M   C+                  G 
Sbjct: 308 DGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGF 367

Query: 154 E--------------RNAMTKLAREYFVQMPNKDIVAWNAMITAYV-------------- 185
           E              R +    AR+ F  M  KD+V+WNA+I  YV              
Sbjct: 368 EFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEK 427

Query: 186 -----------------DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                            + G M ++ ELF +MP+++   W A+I  +  NG    A+   
Sbjct: 428 TQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWF 487

Query: 229 NLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
             M +    PN  T +S+L++  G+    + +  H L +++G E + S+       Y   
Sbjct: 488 IEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKC 547

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 +V      F  + + ++VS+ +MI  ++ +G G +   LF +ML  G KP+EIT
Sbjct: 548 G-----NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEIT 602

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+GVLS C+H GL+E+G   F  M   Y  +P   HY+C+ D+L RAG + +A+ ++  M
Sbjct: 603 FLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSM 662

Query: 406 P--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           P  PH     V GALLGA R+H  + +A    +++ +L+P ++  Y + + ++++ G   
Sbjct: 663 PCEPHSG---VWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNR 719

Query: 464 EFAQVRKKMERR-VKKVASFSQIEV 487
           +  QVR     + VKK A +S I V
Sbjct: 720 DSEQVRMAQGLKGVKKSAGYSWIIV 744



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 177/364 (48%), Gaps = 31/364 (8%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V C S IT   RN DL +AE++F  MP   +N ++ +AM+  Y + G + +ARK+F+++ 
Sbjct: 111 VHCHSQITKHGRNGDLKEAESIFSRMP--HKNAISWTAMLTAYYENGHIAKARKMFEKMP 168

Query: 86  EGNVYSWTSLISGYFKAR--QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +    S+ ++I+ Y ++    + E  +LF  M  + +N +S+  ++ G A  G++   E 
Sbjct: 169 QRTTASYNAMITAYTRSNPMMIGEASKLFAEM--RERNSISYAAMITGLARAGMVDNAEE 226

Query: 144 ISWTT-------MCTGLERNAMTKLAR-----EYFVQMPNKDIVAWNAMITAYVDAGNMA 191
           +   T       +C+    +   K+ R       F  M  +D+++W++M+  Y   G + 
Sbjct: 227 LYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIG 286

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP-NETTCTSILTSC 250
            A ELF  MP+RNV TW AMID + + G       L   M +  F+  N TT T +  +C
Sbjct: 287 HARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEAC 346

Query: 251 EGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                  E +  H L  R+GFE +  L       Y  + +     V  AR  F+ +  KD
Sbjct: 347 SEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSF-----VVEARKIFDMMNRKD 401

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           VVSW A+I  Y  +    + + LF +      + D I++  +++  S+ G + K  + F 
Sbjct: 402 VVSWNALIAGYVQNDEVEEGYVLFEKT----QQKDVISWTTMITGFSNKGKMGKSIELFR 457

Query: 368 LMSR 371
           +M +
Sbjct: 458 MMPK 461



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 37/297 (12%)

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           RN   K A   F +MP+K+ ++W AM+TAY + G++A+A ++F  MPQR   ++NAMI  
Sbjct: 122 RNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITA 181

Query: 215 YARNGPE--GAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN-------------- 256
           Y R+ P   G A KL   M +     N  +  +++T     GM++N              
Sbjct: 182 YTRSNPMMIGEASKLFAEMRER----NSISYAAMITGLARAGMVDNAEELYLETPVEWRD 237

Query: 257 -MLAHALA---IRLGFEQETSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEA 305
            + ++AL    +++G  +E +  ++         W   +D       +  AR  FER+  
Sbjct: 238 PVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPE 297

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRK 364
           ++VV+WTAMI  +   G     F LF RM K G  K +  T   +   CS  G  ++G +
Sbjct: 298 RNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQ 357

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
              L+SR  GF+      + +  +  R   V EA ++   M  + +D V   AL+  
Sbjct: 358 MHGLVSRM-GFEFDVFLGNAIIIMYCRFSFVVEARKIFDMM--NRKDVVSWNALIAG 411


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 250/452 (55%), Gaps = 22/452 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K   ++  R LFD MP
Sbjct: 159 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMP 218

Query: 117 LKLKNVVSWTTVVLGCAH--------NGLIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A         + L A++   ++ISW +M  G  ++   + A++ 
Sbjct: 219 REVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDL 278

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + QA  LF+ MP R+V ++N+M+  Y +N     A+
Sbjct: 279 FDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEAL 338

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S   P+ETT   +L++   +    L+ A+ + L   E++  L  K     +
Sbjct: 339 EIFSDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAMDMHLYIVEKQFFLGGKLGVALI 396

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FE +E K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 397 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKP 453

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 454 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 513

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + +G+ LI     +  +YVL +N++A+ G+
Sbjct: 514 IQEMPIEPND-VIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGK 572

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           W +  ++R  M ER+++K+   S IE+ G+ H
Sbjct: 573 WKDVRRIRTMMKERKIEKIPGCSWIELDGRVH 604



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 174/363 (47%), Gaps = 39/363 (10%)

Query: 8   GKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G ++ A +LFD M +   + +S  S+I+ + +  D +  A  LF  MPE  +++++ ++M
Sbjct: 205 GLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPE--KDLISWNSM 262

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +FD +   +V +W ++I GY K   V + + LFD+MP   ++VVS
Sbjct: 263 IDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP--HRDVVS 320

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LE+ S            TT+   L  +A+ +L R     +  +
Sbjct: 321 YNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVL--SAIAQLGRLSKAMDMHL 378

Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K          A+I  Y   G++  A  +F  +  +++  WNAMI   A +G   +
Sbjct: 379 YIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 438

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A  +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C  
Sbjct: 439 AFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 498

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSG 338
             +      +L  N  +     +E  DV+ W   + A  NH   F+   L  +  +L++G
Sbjct: 499 DILSRSGSIELAKNLIQEM--PIEPNDVI-WRTFLTA-CNHHKEFETGELVGKHLILQAG 554

Query: 339 TKP 341
             P
Sbjct: 555 YNP 557


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 167/565 (29%), Positives = 273/565 (48%), Gaps = 97/565 (17%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA+KLF EM + + +S A+MIT   R   +  AE L+   P   R+ V  +A+I GY+
Sbjct: 111 IGEASKLFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYL 170

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           K GR++EA ++F+ + E +V SW+S++ GY K  ++   R LF+RMP   +NVV+WT ++
Sbjct: 171 KVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP--ERNVVTWTAMI 228

Query: 130 -----LGCAHNGL----------IAKLEVISWTTM---CT------------------GL 153
                +GC   G             K+   + T M   C+                  G 
Sbjct: 229 DGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGF 288

Query: 154 E--------------RNAMTKLAREYFVQMPNKDIVAWNAMITAYV-------------- 185
           E              R +    AR+ F  M  KD+V+WNA+I  YV              
Sbjct: 289 EFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEK 348

Query: 186 -----------------DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                            + G M ++ ELF +MP+++   W A+I  +  NG    A+   
Sbjct: 349 TQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWF 408

Query: 229 NLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
             M +    PN  T +S+L++  G+    + +  H L +++G E + S+       Y   
Sbjct: 409 IEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKC 468

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 +V      F  + + ++VS+ +MI  ++ +G G +   LF +ML  G KP+EIT
Sbjct: 469 G-----NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEIT 523

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+GVLS C+H GL+E+G   F  M   Y  +P   HY+C+ D+L RAG + +A+ ++  M
Sbjct: 524 FLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSM 583

Query: 406 P--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           P  PH     V GALLGA R+H  + +A    +++ +L+P ++  Y + + ++++ G   
Sbjct: 584 PCEPHSG---VWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNR 640

Query: 464 EFAQVRKKME-RRVKKVASFSQIEV 487
           +  QVR     + VKK A +S I V
Sbjct: 641 DSEQVRMAQGLKGVKKSAGYSWIIV 665



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 177/364 (48%), Gaps = 31/364 (8%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V C S IT   RN DL +AE++F  MP   +N ++ +AM+  Y + G + +ARK+F+++ 
Sbjct: 32  VHCHSQITKHGRNGDLKEAESIFSRMP--HKNAISWTAMLTAYYENGHIAKARKMFEKMP 89

Query: 86  EGNVYSWTSLISGYFKAR--QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +    S+ ++I+ Y ++    + E  +LF  M  + +N +S+  ++ G A  G++   E 
Sbjct: 90  QRTTASYNAMITAYTRSNPMMIGEASKLFAEM--RERNSISYAAMITGLARAGMVDNAEE 147

Query: 144 ISWTT-------MCTGLERNAMTKLAR-----EYFVQMPNKDIVAWNAMITAYVDAGNMA 191
           +   T       +C+    +   K+ R       F  M  +D+++W++M+  Y   G + 
Sbjct: 148 LYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIG 207

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP-NETTCTSILTSC 250
            A ELF  MP+RNV TW AMID + + G       L   M +  F+  N TT T +  +C
Sbjct: 208 HARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEAC 267

Query: 251 EGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                  E +  H L  R+GFE +  L       Y  + +     V  AR  F+ +  KD
Sbjct: 268 SEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSF-----VVEARKIFDMMNRKD 322

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           VVSW A+I  Y  +    + + LF +      + D I++  +++  S+ G + K  + F 
Sbjct: 323 VVSWNALIAGYVQNDEVEEGYVLFEKT----QQKDVISWTTMITGFSNKGKMGKSIELFR 378

Query: 368 LMSR 371
           +M +
Sbjct: 379 MMPK 382


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 161/554 (29%), Positives = 275/554 (49%), Gaps = 81/554 (14%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA  +FD++S PD      MIT + RN+    A  LF  MP   +++V+ ++MI G 
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP--VKDVVSWNSMIKGC 67

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
                +  ARK+FDE+ E +V SWT++I+G+ +  +++    LF +MP +  ++ +W ++
Sbjct: 68  FDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR--DIAAWNSM 125

Query: 129 VLGCAHNGLIAK----------LEVISWTTMCTGLERNAMTKLAREYFVQM--------P 170
           + G   NG +              VISWT+M  GL+++  ++ A   F QM        P
Sbjct: 126 IYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 185

Query: 171 NK---------------------------------DIVAWNAMITAYVDAGNMAQASELF 197
                                              D     A+IT Y +   M  +  +F
Sbjct: 186 TSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 245

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           +     NV  W A++  Y  N     A+K+   M +   +PN+++ TS L SC G LE +
Sbjct: 246 HGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCG-LEAL 304

Query: 258 ----LAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
                 H  A++LG E +         + Y+C             ++N   + F+R+  K
Sbjct: 305 DWGREIHTAAVKLGLETDVFVGNSLIVMYYRCG------------NLNDGVVIFKRISKK 352

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           ++VSW ++I+  + HG G      F +M++S  +PDEITF G+LS CSH+G+ +KGR  F
Sbjct: 353 NIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 412

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              S     + + +HY+C+ DIL R+G+++EA  ++  MP      V L  LL AC +H 
Sbjct: 413 KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL-VLLSACTMHS 471

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
            + +A+   + +I+L+P  S AYVL +N++A+   W + +++R++M++R + K    S I
Sbjct: 472 KLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWI 531

Query: 486 EVKGKDHTLLAPMR 499
            +KG  +  L+  R
Sbjct: 532 TIKGWRNEFLSGDR 545



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 174/399 (43%), Gaps = 67/399 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MI  +++  R+DEAR VFD++   +VY +T +I+GY +  + D   +LF  MP+K  +VV
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK--DVV 58

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           SW +++ GC                 C  L       +AR+ F +MP + +V+W  MI  
Sbjct: 59  SWNSMIKGCFD---------------CADL------TMARKLFDEMPERSVVSWTTMING 97

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM------------ 231
           ++  G +  A  LF  MP R++  WN+MI  Y  NG     ++L   M            
Sbjct: 98  FLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMI 157

Query: 232 ---------------FQS------RFMPNETTCTSILTSC---EGMLENMLAHALAIRLG 267
                          F+          P  +T   ++T+C     + + +  HA   +LG
Sbjct: 158 GGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLG 217

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           +  +  ++      Y       Q++ +S R+   +L   +VV WTA++  Y  +      
Sbjct: 218 YSFDAYISAALITFYANCK---QME-DSLRVFHGKLHM-NVVIWTALVTGYGLNCKHEDA 272

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
            ++F  M++ G  P++ +F   L+ C     ++ GR+  +  +   G +      + L  
Sbjct: 273 LKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNSLIV 331

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  R G + + + +  ++   +++ V   +++  C  HG
Sbjct: 332 MYYRCGNLNDGVVIFKRIS--KKNIVSWNSVIVGCAQHG 368



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 44/281 (15%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--------PESQ 55
           + C G+V++  +LF EM   + +S  SMI    ++    +A  LFR M        P S 
Sbjct: 129 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 188

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                 +A  +       V     VF   Y  + Y   +LI+ Y   +Q+++  R+F   
Sbjct: 189 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG- 247

Query: 116 PLKLK-NVVSWTTVVLG----CAHNG-------------LIAKLEVISWTTMCTGLE--- 154
             KL  NVV WT +V G    C H               L  +    S    C GLE   
Sbjct: 248 --KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALD 305

Query: 155 -----RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                  A  KL  E        D+   N++I  Y   GN+     +F  + ++N+ +WN
Sbjct: 306 WGREIHTAAVKLGLE-------TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWN 358

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++I   A++G    A+   N M +S   P+E T T +L++C
Sbjct: 359 SVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSAC 399


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 230/444 (51%), Gaps = 37/444 (8%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +I   +A+ID Y + G   V +A K+F+++ E +  SW S++ G  KA ++ + R+LFD 
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDE 210

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP +                       ++ISW TM  G  R      A E F +MP ++ 
Sbjct: 211 MPQR-----------------------DLISWNTMLDGYARCREMSRAFELFEKMPERNT 247

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           V+W+ M+  Y  AG+M  A  +F+ MP   +NV TW  +I  YA  G    A KL++ M 
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMV 307

Query: 233 QS--RFMPNETTCTSILTSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            S  RF            +  G+L   M AH++  +       S+       Y       
Sbjct: 308 ASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCG--- 364

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   F  +  KD+VSW  M+     HGHG +   LF+RM K G  PD++TF+ V
Sbjct: 365 --SLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAV 422

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+HAGL+++G   F  M + Y   P+ EHY CL D+L R G++KEA++VV  M P E
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTM-PME 481

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + V+ GALLGACR+H +V +A  + + L++L PS  G Y L +N++AA  +W+  A +R
Sbjct: 482 PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIR 541

Query: 470 KKMERR-VKKVASFSQIEVKGKDH 492
            KM+   V+K +  S +E++   H
Sbjct: 542 SKMKSMGVEKPSGASSVELEDGIH 565



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 143/264 (54%), Gaps = 21/264 (7%)

Query: 6   CTG-KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           C G  V++A KLF++MS+ D VS  SM+   ++  +L  A  LF  MP  QR++++ + M
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMP--QRDLISWNTM 222

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +DGY +   +  A ++F+++ E N  SW++++ GY KA  ++  R +FD+MP   KNVV+
Sbjct: 223 LDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVT 282

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGL---------------ERNAMTKLAREYFV-- 167
           WT ++ G A  GL+ + + +    + +GL               E   ++   R + +  
Sbjct: 283 WTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIK 342

Query: 168 -QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
               N +    NA++  Y   G++ +A ++FN MP++++ +WN M+     +G    A++
Sbjct: 343 KSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIE 402

Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
           L + M +    P++ T  ++L SC
Sbjct: 403 LFSRMRKEGIWPDKVTFIAVLCSC 426



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 10/187 (5%)

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           L  C  + +    HA  IR    Q+  +  K                N A   F +++  
Sbjct: 26  LPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISAL-----SLCRQTNLALRVFNQVQEP 80

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +V    ++I A++ +   +Q F +F+ M + G   D  T+  +L  CS    +   +   
Sbjct: 81  NVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMH 140

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
           N + +  G        + L D   R G   V++AM++  KM   ERD V   ++LG    
Sbjct: 141 NHIEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM--SERDTVSWNSMLGGLVK 197

Query: 425 HGDVRMA 431
            G++R A
Sbjct: 198 AGELRDA 204


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 161/554 (29%), Positives = 275/554 (49%), Gaps = 81/554 (14%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++ EA  +FD++S PD      MIT + RN+    A  LF  MP   +++V+ ++MI G 
Sbjct: 26  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP--VKDVVSWNSMIKGC 83

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
                +  ARK+FDE+ E +V SWT++I+G+ +  +++    LF +MP +  ++ +W ++
Sbjct: 84  FDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR--DIAAWNSM 141

Query: 129 VLGCAHNGLIAK----------LEVISWTTMCTGLERNAMTKLAREYFVQM--------P 170
           + G   NG +              VISWT+M  GL+++  ++ A   F QM        P
Sbjct: 142 IYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 201

Query: 171 NK---------------------------------DIVAWNAMITAYVDAGNMAQASELF 197
                                              D     A+IT Y +   M  +  +F
Sbjct: 202 TSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 261

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           +     NV  W A++  Y  N     A+K+   M +   +PN+++ TS L SC G LE +
Sbjct: 262 HGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCG-LEAL 320

Query: 258 ----LAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
                 H  A++LG E +         + Y+C             ++N   + F+R+  K
Sbjct: 321 DWGREIHTAAVKLGLETDVFVGNSLIVMYYRCG------------NLNDGVVIFKRISKK 368

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           ++VSW ++I+  + HG G      F +M++S  +PDEITF G+LS CSH+G+ +KGR  F
Sbjct: 369 NIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 428

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              S     + + +HY+C+ DIL R+G+++EA  ++  MP      V L  LL AC +H 
Sbjct: 429 KYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWL-VLLSACTMHS 487

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
            + +A+   + +I+L+P  S AYVL +N++A+   W + +++R++M++R + K    S I
Sbjct: 488 KLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWI 547

Query: 486 EVKGKDHTLLAPMR 499
            +KG  +  L+  R
Sbjct: 548 TIKGWRNEFLSGDR 561



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 180/402 (44%), Gaps = 38/402 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           SMIT  LRN  + +A  +F  +  S  ++   + MI GY +  R D A ++F E+   +V
Sbjct: 16  SMITDHLRNQRIDEARTVFDKV--SFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV 73

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW S+I G F    +   R+LFD MP +                        V+SWTTM
Sbjct: 74  VSWNSMIKGCFDCADLTMARKLFDEMPER-----------------------SVVSWTTM 110

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             G  +    ++A   F +MP +DI AWN+MI  Y   G +     LF  MP RNV +W 
Sbjct: 111 INGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWT 170

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQS--RFMPNETTCTSILTSC---EGMLENMLAHALAI 264
           +MI    ++G    A+ L   M        P  +T   ++T+C     + + +  HA   
Sbjct: 171 SMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVF 230

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           +LG+  +  ++      Y       Q++ +S R+   +L   +VV WTA++  Y  +   
Sbjct: 231 KLGYSFDAYISAALITFYANCK---QME-DSLRVFHGKLHM-NVVIWTALVTGYGLNCKH 285

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
               ++F  M++ G  P++ +F   L+ C     ++ GR+  +  +   G +      + 
Sbjct: 286 EDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNS 344

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           L  +  R G + + + +  ++   +++ V   +++  C  HG
Sbjct: 345 LIVMYYRCGNLNDGVVIFKRIS--KKNIVSWNSVIVGCAQHG 384



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 66/275 (24%)

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           +S+ S+I+ + + +++DE R +FD+        VS+  V L               +T M
Sbjct: 12  FSYQSMITDHLRNQRIDEARTVFDK--------VSFPDVYL---------------YTMM 48

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
            TG  RN     A + F +MP KD+V+WN+MI    D  ++  A +LF+ MP+R+V +W 
Sbjct: 49  ITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWT 108

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
            MI+ + + G    A                          EG+   M    +A      
Sbjct: 109 TMINGFLQFGKIEVA--------------------------EGLFYKMPFRDIA------ 136

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
              S+ Y   C+    D G +L        F+ +  ++V+SWT+MI     HG   +   
Sbjct: 137 AWNSMIYGYCCNGRVED-GLRL--------FQEMPCRNVISWTSMIGGLDQHGRSEEALG 187

Query: 330 LFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKG 362
           LF +M+  G   KP   T+  V++ C++A  + +G
Sbjct: 188 LFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 44/281 (15%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--------PESQ 55
           + C G+V++  +LF EM   + +S  SMI    ++    +A  LFR M        P S 
Sbjct: 145 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 204

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                 +A  +       V     VF   Y  + Y   +LI+ Y   +Q+++  R+F   
Sbjct: 205 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG- 263

Query: 116 PLKLK-NVVSWTTVVLG----CAHNG-------------LIAKLEVISWTTMCTGLE--- 154
             KL  NVV WT +V G    C H               L  +    S    C GLE   
Sbjct: 264 --KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALD 321

Query: 155 -----RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                  A  KL  E        D+   N++I  Y   GN+     +F  + ++N+ +WN
Sbjct: 322 WGREIHTAAVKLGLE-------TDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWN 374

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++I   A++G    A+   N M +S   P+E T T +L++C
Sbjct: 375 SVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSAC 415


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 244/456 (53%), Gaps = 40/456 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           E+++I  Y   G +  A+KVFD++ + ++ SW SLI GY +  +  E   LF+ M  +  
Sbjct: 195 ENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLM--REA 252

Query: 121 NV----VSWTTVVLGCAH---NGLI-----------AKLEVISWTTMCTGLERNAMTKLA 162
           NV    V+   V+L C++   +G++             ++V    ++     R  +  LA
Sbjct: 253 NVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLA 312

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           R  F +M  K+IV+WNAM+T Y  AG++  A +LFN MP RNV +W  MI   A+     
Sbjct: 313 RRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCS 372

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETS-----L 274
            A+KL   M  +   P+E T +S+L++C   G+L+     H    R   + +       +
Sbjct: 373 DALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALI 432

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
              C C  V          + A   F  ++ KD VSWT+MIL  + +G    VF LF++M
Sbjct: 433 DMYCKCGVV----------DKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQM 482

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           L+ G +P   +F+G+L  C+HAGLV+KG + F  M   YG +P  +HY C+ D+L R+G+
Sbjct: 483 LRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGE 542

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +  A   + +MP    D V+   LL AC+LH ++ +A+    +L+EL PS+SG YVL +N
Sbjct: 543 LDRAYEFIKQMPV-VPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSN 601

Query: 455 VHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
            +A    WD+ +++R  M    V+K +S+S IEV G
Sbjct: 602 TYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVIG 637



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 61/304 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES- 62
           +G  G++  A K+FD+M   D VS  S+I  + + +   +   LF  M E+  N+ A+S 
Sbjct: 202 YGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREA--NVTADSV 259

Query: 63  --------------------------------------AMIDGYVKAGRVDEARKVFDEI 84
                                                 ++ID Y + G VD AR+VFD +
Sbjct: 260 TMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRM 319

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH---------- 134
            E N+ SW ++++GY  A  +   ++LF+ MP  ++NV+SWT ++ GCA           
Sbjct: 320 QEKNIVSWNAMLTGYATAGDLVAAKKLFNEMP--IRNVISWTCMISGCAQANQCSDALKL 377

Query: 135 -------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVD 186
                  N    ++ V S  + C+ L      +   EY  +   K D+   NA+I  Y  
Sbjct: 378 FQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCK 437

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G + +A E+F+ M +++  +W +MI   A NG      +L + M +    P   +   I
Sbjct: 438 CGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGI 497

Query: 247 LTSC 250
           L +C
Sbjct: 498 LLAC 501


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 164/541 (30%), Positives = 270/541 (49%), Gaps = 72/541 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RN 57
           F   G++ EA   F++M +    P+ V+  S++        L + + +   + E+    +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               +A++  Y K G + +A +VF++I + NV +W ++I+ Y +  Q D     F  + L
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL-L 506

Query: 118 K---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           K     N  ++T+++  C  +  +   + + +  M  GLE                  D+
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE-----------------SDL 549

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA+++ +V+ G++  A  LFN MP+R++ +WN +I  + ++G    A     +M +S
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVF 284
              P++ T T +L +C   E + E    HAL     F+ +        S+  KC      
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCG----- 664

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +  A   F +L  K+V SWT+MI  Y+ HG G +   LF +M + G KPD I
Sbjct: 665 -------SIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWI 717

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVG LS C+HAGL+E+G   F  M + +  +PR EHY C+ D+  RAG + EA+  + K
Sbjct: 718 TFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M   E D  V GALLGAC++H +V +A+   ++ +EL P+ +G +V+ +N++AA G W E
Sbjct: 777 MQV-EPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKE 835

Query: 465 FAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA--------------------PMREMGY 503
            A++RK M +R V K    S IEV GK HT  +                     MR++GY
Sbjct: 836 VAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGY 895

Query: 504 V 504
           V
Sbjct: 896 V 896



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 197/453 (43%), Gaps = 65/453 (14%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G  +EA KL ++M Q    PD  +  SM+       ++ K   L+  + ++    ++   
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+I+ ++K G + +A KVFD +   ++ +WTS+I+G  +  +  +   LF RM  +   
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 120 KNVVSWTTVVLGCAH-------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
            + V++ +++  C H         + A+++ + W T                        
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT------------------------ 345

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +I    A+++ Y   G+M  A E+F+L+  RNV +W AMI  +A++G    A    N M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 233 QSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQET-----SLTYKCTCHY 282
           +S   PN  T  SIL +C         + +  H +    G +        S+  KC    
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG--- 462

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     +  A   FE++  ++VV+W AMI AY  H         F  +LK G KP+
Sbjct: 463 ---------SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             TF  +L+ C  +  +E G+    L+ +A G +      + L  +    G +  A  + 
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLESDLHVSNALVSMFVNCGDLMSAKNLF 572

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA-DYI 434
           + MP  +RD V    ++     HG  ++A DY 
Sbjct: 573 NDMP--KRDLVSWNTIIAGFVQHGKNQVAFDYF 603



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 189/395 (47%), Gaps = 52/395 (13%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           ++++ + ++  +L   E ++  + +S  Q +I   + +I+ Y K G    A+++FD++ E
Sbjct: 114 SALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMRE 173

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAKL 141
            +VYSW  L+ GY +    +E  +L ++M   +++ V     ++ +++  CA    + K 
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQM---VQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             +    +  G +                  D+    A+I  ++  G++  A+++F+ +P
Sbjct: 231 RELYNLILKAGWD-----------------TDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENML 258
            R++ TW +MI   AR+G    A  L   M +    P++    S+L +C   E + +   
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 259 AHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            HA    +G++ E        S+  KC              +  A   F+ ++ ++VVSW
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCG------------SMEDALEVFDLVKGRNVVSW 381

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN-LMS 370
           TAMI  ++ HG   + F  F +M++SG +P+ +TF+ +L  CS    +++G++  + ++ 
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             YG   R    + L  +  + G +K+A RV  K+
Sbjct: 442 AGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKI 474



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 25/278 (8%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI  WN +I  Y   GN   A ++F+ M +++V++WN ++  Y ++G    A KL   M 
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE-------TSLTYKCTCHY 282
           Q    P++ T  S+L +C     + +    + L ++ G++ +        ++  KC    
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG--- 260

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    D+  A   F+ L  +D+V+WT+MI   + HG   Q   LF RM + G +PD
Sbjct: 261 ---------DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           ++ FV +L  C+H   +E+G+K    M +  G+       + +  +  + G +++A+ V 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
             +    R+ V   A++     HG +  A     ++IE
Sbjct: 371 DLVKG--RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 142/289 (49%), Gaps = 36/289 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +K+A ++F+++S+ + V+  +MIT ++++     A A F+A+   +  I   
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL--KEGIKPN 513

Query: 62  SAMIDGYVKAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S+     +   +  ++ ++   ++        E +++   +L+S +     +   + LF+
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG--LIA------------KLEVISWTTM---CTGLERN 156
            MP   +++VSW T++ G   +G   +A            K + I++T +   C   E  
Sbjct: 574 DMP--KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE-- 629

Query: 157 AMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           A+T+  R + +      + D++    +I+ Y   G++  A ++F+ +P++NV++W +MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIT 689

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAH 260
            YA++G    A++L   M Q    P+  T    L++C   G++E  L H
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 254/521 (48%), Gaps = 74/521 (14%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKA------EALFRAMPESQ----------- 55
           AT LFD +  PD   C ++I  + R  D P A      + L R++P +            
Sbjct: 59  ATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCT 118

Query: 56  ---------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                                 ++ A +++I  Y   GR+  AR VFDE    ++ S+ S
Sbjct: 119 DIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNS 178

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           +I GY K  ++   R++F+ MP +                       +V+SW  +  G  
Sbjct: 179 MIDGYVKNGEIGAARKVFNEMPDR-----------------------DVLSWNCLIAGYV 215

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMI 212
                  A E F  +P +D V+WN MI      GN++ A + F+ MP   RNV +WN+++
Sbjct: 216 GVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVL 275

Query: 213 DRYARNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLE---NMLAHALAIRLGF 268
             +AR    G  + L   M + R  +PNE T  S+LT+C  + +    M  H+       
Sbjct: 276 ALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNI 335

Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           + +  L    TC    +     +D+  A+  F+ +  + VVSW +MI+ Y  HG G +  
Sbjct: 336 KPDVLLL---TCLLTMYAKCGAMDL--AKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKAL 390

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M K+G +P++ TF+ VLS C+HAG+V +G   F+LM R Y  +P+ EHY C+ D+
Sbjct: 391 ELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDL 450

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG V+ +  ++ +M P +    + GALL  C  H D  + + + +R IEL+P   G 
Sbjct: 451 LARAGLVENSEELI-RMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGP 509

Query: 449 YVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           Y+L +N++AA+G WD+   VR  + E+ ++K A+ S + ++
Sbjct: 510 YILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLE 550



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 23/267 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G++  A  +FDE    D VS  SMI  +++N ++  A  +F  MP+  R++++ + 
Sbjct: 152 YSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPD--RDVLSWNC 209

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I GYV  G +D A ++F+ I E +  SW  +I G  +   V    + FDRMP  ++NVV
Sbjct: 210 LIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVV 269

Query: 124 SWTTVVLGCAHNG-------LIAKL-----------EVISWTTMCTGLERNAMTKLAREY 165
           SW +V+   A          L  K+            ++S  T C  L + +M       
Sbjct: 270 SWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHS- 328

Query: 166 FVQMPN--KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           F++  N   D++    ++T Y   G M  A  +F+ MP R+V +WN+MI  Y  +G    
Sbjct: 329 FIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDK 388

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A++L   M ++   PN+ T  S+L++C
Sbjct: 389 ALELFLEMEKAGQQPNDATFISVLSAC 415


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1243

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 261/516 (50%), Gaps = 52/516 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +    ++ EA  LF++M + + VS ++MIT F  N ++ +A  LFR MP    + +  
Sbjct: 488 SGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLC- 546

Query: 62  SAMIDGYVKAGRVDEARKVF------DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            A++ G +K  R++EA  V       D   E  VY++ +LI GY +  QV+  R LFD++
Sbjct: 547 -ALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQI 605

Query: 116 PLKL--------------KNVVSWTTVVLGCAHNGLI--AKL--------EVISWTTMCT 151
           P                 +NVVSW +++      G +  A+L        + ISW TM  
Sbjct: 606 PDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMID 665

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G    +    A   F +MPN+D  +WN M++ Y   GN+  A   F   P++N+ +WN++
Sbjct: 666 GYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSI 725

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGF 268
           I  Y +N     A+ +   M      P+  T TS+L+   G++     M  H + ++   
Sbjct: 726 IAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKTVI 785

Query: 269 E----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGH 323
                    +T    C           ++  +R  F+ ++ K +V++W A+I  Y+ HG+
Sbjct: 786 PDVPVHNALITMYSRCG----------EIMESRRIFDEMKLKREVITWNAIIGGYAFHGN 835

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   LF  M   G  P  ITFV VL+ C+HAGLV++ ++ F  M   Y  +P+ EHYS
Sbjct: 836 ASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYKIEPQMEHYS 895

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            L +++   GQ +EAM V+  M P E D  V GALL ACR++ +V +A    E +  L+P
Sbjct: 896 SLVNVISGQGQFEEAMYVIKSM-PFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEP 954

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
            SS  YVL  N++A  G WDE +QVR  ME +R+KK
Sbjct: 955 ESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKK 990



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 83/454 (18%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHD---LPKAEALFRAMPESQRNIVAESAMI 65
           ++ +A KLFDEM + D V+  +MI+ ++       L +A  LF  MP   R+  + + MI
Sbjct: 430 EMTQARKLFDEMPERDVVTWNAMISGYVSCGGIRFLEEARKLFDEMP--SRDSFSWNTMI 487

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
            GY K  R+ EA  +F+++ E N  SW+++I+G+    +V+    LF RMP  +K+  S 
Sbjct: 488 SGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMP--VKDSSSL 545

Query: 126 TTVVLGCAHN----------GLIAKLE------VISWTTMCTGLERNAMTKLAREYFVQM 169
             +V G   N          G    L+      V ++ T+  G  +    + AR  F Q+
Sbjct: 546 CALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQI 605

Query: 170 PN----------------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           P+                +++V+WN+MI AY+  G++  A  LF+ M  R+  +WN MID
Sbjct: 606 PDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMID 665

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS 273
            Y        A  L +       MPN           +    NM+    A  +G      
Sbjct: 666 GYVHVSRMDDAFALFSE------MPNR----------DAHSWNMMVSGYA-SVG------ 702

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
                             ++  AR  FE+   K++VSW ++I AY  +    +   +F R
Sbjct: 703 ------------------NLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIR 744

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M   G KPD  T   +LS  +    +  G +   ++ +     P    ++ L  +  R G
Sbjct: 745 MNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKT--VIPDVPVHNALITMYSRCG 802

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
           ++ E+ R+  +M   +R+ +   A++G    HG+
Sbjct: 803 EIMESRRIFDEM-KLKREVITWNAIIGGYAFHGN 835



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 50/296 (16%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           A +  ++  +++G + EAR++F+++   N+ +W ++ISGY K R++ + R+LFD MP + 
Sbjct: 386 ATNKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPER- 444

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            +VV+W  ++ G    G I  LE                   AR+ F +MP++D  +WN 
Sbjct: 445 -DVVTWNAMISGYVSCGGIRFLEE------------------ARKLFDEMPSRDSFSWNT 485

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           MI+ Y     +++A  LF  MP+RN  +W+AMI  +  NG    A  L       R MP 
Sbjct: 486 MISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLF------RRMPV 539

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGF-----EQETSLTYKCTCHYVFWDWGFQLDVN 294
           + + +S+     G+++N      A  LG           L Y      V   +G +  V 
Sbjct: 540 KDS-SSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIV--GYGQRGQVE 596

Query: 295 SARLAFERLEA----------------KDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           +AR  F+++                  ++VVSW +MI AY   G       LF +M
Sbjct: 597 AARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQM 652


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 254/499 (50%), Gaps = 71/499 (14%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++I+ Y ++G ++ A+ VFD+    +  S+T+LI+GY     +D  R+LFD MP
Sbjct: 163 DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMP 222

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMT 159
           +K  +VVSW  ++ G A  G       L   +           ++S  + C   + NA+ 
Sbjct: 223 VK--DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACA--QSNAL- 277

Query: 160 KLAREYFVQMPNKDIVA----WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
            L       + ++ + +     NA+I  Y   G++  A ELF+ M +R+V +WN MI  Y
Sbjct: 278 DLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGY 337

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-------- 267
                   A+ L   M  S   P E T  SIL SC        AH  AI LG        
Sbjct: 338 THMCSYKEALALFREMLASGVEPTEITFLSILPSC--------AHLGAIDLGKWIHAYIN 389

Query: 268 ----------FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
                           L  KC             ++ +AR  F+ ++ K + SW AMI  
Sbjct: 390 KNFNSVSTSLSTSLIDLYAKCG------------NIVAARQVFDGMKIKSLASWNAMICG 437

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
            + HG   + F LF++M   G +P+EITFVG+LS C HAGLV+ G++ F+ M + Y   P
Sbjct: 438 LAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISP 497

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
           +++HY C+ D+L RAG  +EA  ++  M   + D  + G+LLGACR HG V + + + ER
Sbjct: 498 KSQHYGCMIDLLGRAGLFEEAESLLQNMEV-KPDGAIWGSLLGACRDHGRVELGELVAER 556

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L EL+P + GAYVL +N++A  G+WD+ A++R ++ +R +KKV   + IEV    H  L 
Sbjct: 557 LFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLV 616

Query: 497 -----PMREMGYVVLKEVD 510
                P  E  Y +L+EVD
Sbjct: 617 GDKVHPQSEDIYRMLEEVD 635



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 112/272 (41%), Gaps = 38/272 (13%)

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           +A   +G+++ A  LFN + + N++ WN+MI   + +     A+     M  S   PN  
Sbjct: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSY 130

Query: 242 TCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYV--------------- 283
           T   +L SC  +    E    HA  ++LGF  +  +       Y                
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 284 -FWD-------------WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
            F D             WG+   ++ AR  F+ +  KDVVSW AMI  Y+  G   +   
Sbjct: 191 NFRDAISFTALIAGYALWGY---MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALL 247

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF  M K+   P+E T V VLS C+ +  ++ G    + +    G     +  + L D+ 
Sbjct: 248 LFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDR-GLCSNLKLVNALIDMY 306

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            + G ++ A  +   M   ERD +    ++G 
Sbjct: 307 SKCGDLQTARELFDDML--ERDVISWNVMIGG 336



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 80/366 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-----PESQRNIVA-- 60
           G +  A +LFDEM   D VS  +MI  + +     +A  LF  M     P ++  IV+  
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268

Query: 61  ------------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                          +A+ID Y K G +  AR++FD++ E +V 
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVI 328

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           SW  +I GY       E   LF  M      P +    +++ +++  CAH G I   ++ 
Sbjct: 329 SWNVMIGGYTHMCSYKEALALFREMLASGVEPTE----ITFLSILPSCAHLGAI---DLG 381

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
            W         N+++       + +              Y   GN+  A ++F+ M  ++
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDL--------------YAKCGNIVAARQVFDGMKIKS 427

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           + +WNAMI   A +G    A +L + M      PNE T   IL++C+        HA  +
Sbjct: 428 LASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK--------HAGLV 479

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--------KDVVSWTAMIL 316
            LG +  +S+            +G  +D+      FE  E+         D   W +++ 
Sbjct: 480 DLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLG 539

Query: 317 AYSNHG 322
           A  +HG
Sbjct: 540 ACRDHG 545


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 164/541 (30%), Positives = 270/541 (49%), Gaps = 72/541 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RN 57
           F   G++ EA   F++M +    P+ V+  S++        L + + +   + E+    +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               +A++  Y K G + +A +VF++I + NV +W ++I+ Y +  Q D     F  + L
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL-L 506

Query: 118 K---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           K     N  ++T+++  C  +  +   + + +  M  GLE                  D+
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE-----------------SDL 549

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA+++ +V+ G++  A  LFN MP+R++ +WN +I  + ++G    A     +M +S
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVF 284
              P++ T T +L +C   E + E    HAL     F+ +        S+  KC      
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCG----- 664

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +  A   F +L  K+V SWT+MI  Y+ HG G +   LF +M + G KPD I
Sbjct: 665 -------SIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWI 717

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVG LS C+HAGL+E+G   F  M + +  +PR EHY C+ D+  RAG + EA+  + K
Sbjct: 718 TFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M   E D  V GALLGAC++H +V +A+   ++ +EL P+ +G +V+ +N++AA G W E
Sbjct: 777 MQV-EPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKE 835

Query: 465 FAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA--------------------PMREMGY 503
            A++RK M +R V K    S IEV GK HT  +                     MR++GY
Sbjct: 836 VAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGY 895

Query: 504 V 504
           V
Sbjct: 896 V 896



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 197/452 (43%), Gaps = 65/452 (14%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G  +EA KL ++M Q    PD  +  SM+       ++ K   L+  + ++    ++   
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+I+ ++K G + +A KVFD +   ++ +WTS+I+G  +  +  +   LF RM  +   
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 120 KNVVSWTTVVLGCAH-------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
            + V++ +++  C H         + A+++ + W T                        
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT------------------------ 345

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +I    A+++ Y   G+M  A E+F+L+  RNV +W AMI  +A++G    A    N M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 233 QSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQET-----SLTYKCTCHY 282
           +S   PN  T  SIL +C         + +  H +    G +        S+  KC    
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG--- 462

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     +  A   FE++  ++VV+W AMI AY  H         F  +LK G KP+
Sbjct: 463 ---------SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPN 513

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             TF  +L+ C  +  +E G+    L+ +A G +      + L  +    G +  A  + 
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLESDLHVSNALVSMFVNCGDLMSAKNLF 572

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA-DY 433
           + MP  +RD V    ++     HG  ++A DY
Sbjct: 573 NDMP--KRDLVSWNTIIAGFVQHGKNQVAFDY 602



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 189/395 (47%), Gaps = 52/395 (13%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           ++++ + ++  +L   E ++  + +S  Q +I   + +I+ Y K G    A+++FD++ E
Sbjct: 114 SALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMRE 173

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAKL 141
            +VYSW  L+ GY +    +E  +L ++M   +++ V     ++ +++  CA    + K 
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQM---VQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             +    +  G +                  D+    A+I  ++  G++  A+++F+ +P
Sbjct: 231 RELYNLILKAGWD-----------------TDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENML 258
            R++ TW +MI   AR+G    A  L   M +    P++    S+L +C   E + +   
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 259 AHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            HA    +G++ E        S+  KC              +  A   F+ ++ ++VVSW
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCG------------SMEDALEVFDLVKGRNVVSW 381

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN-LMS 370
           TAMI  ++ HG   + F  F +M++SG +P+ +TF+ +L  CS    +++G++  + ++ 
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             YG   R    + L  +  + G +K+A RV  K+
Sbjct: 442 AGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKI 474



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 25/278 (8%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI   N +I  Y   GN   A ++F+ M +++V++WN ++  Y ++G    A KL   M 
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE-------TSLTYKCTCHY 282
           Q    P++ T  S+L +C     + +    + L ++ G++ +        ++  KC    
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG--- 260

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    D+  A   F+ L  +D+V+WT+MI   + HG   Q   LF RM + G +PD
Sbjct: 261 ---------DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           ++ FV +L  C+H   +E+G+K    M +  G+       + +  +  + G +++A+ V 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
             +    R+ V   A++     HG +  A     ++IE
Sbjct: 371 DLVKG--RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 142/289 (49%), Gaps = 36/289 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +K+A ++F+++S+ + V+  +MIT ++++     A A F+A+   +  I   
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL--KEGIKPN 513

Query: 62  SAMIDGYVKAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S+     +   +  ++ ++   ++        E +++   +L+S +     +   + LF+
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG--LIA------------KLEVISWTTM---CTGLERN 156
            MP   +++VSW T++ G   +G   +A            K + I++T +   C   E  
Sbjct: 574 DMP--KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE-- 629

Query: 157 AMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           A+T+  R + +      + D++    +I+ Y   G++  A ++F+ +P++NV++W +MI 
Sbjct: 630 ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIA 689

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAH 260
            YA++G    A++L   M Q    P+  T    L++C   G++E  L H
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 237/460 (51%), Gaps = 28/460 (6%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLK 118
           +G +  AR VFD I+  N + W ++I GY  +++ +E   L+  M            P  
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFL 124

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           LK   S + +      +  I K+    E+ +  ++     ++   K AR  F Q+  +D 
Sbjct: 125 LKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+WN+MI  Y   G +  A E+FN MP+RN+ +W +MI      G    A+ L + M  +
Sbjct: 185 VSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA 244

Query: 235 RFMPNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
               +     S L +C   G+L +    HA   +   E E      C    ++   G   
Sbjct: 245 GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--HEIEIDPILGCVLIDMYAKCG--- 299

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D+  A   F ++E K V  WTAMI  Y+ HG G +    F +M  +G +P+++TF G+L+
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLV + +  F  M R +GFKP  EHY C+ D+L RAG +KEA  ++  MP  + +
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV-KPN 418

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + GALL AC +HG++ +   IG+ LI++ P   G Y+  A++HAA GEW++ A+VR++
Sbjct: 419 AAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQ 478

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEVD 510
           M E+ V K+   S I V G  H  LA   +  +  +KE+D
Sbjct: 479 MKEQGVSKLPGCSVISVNGTAHEFLAG--DESHPQIKEID 516



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 23/224 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ V+ ++ D+  A  LF  +   QR+ V+ ++MIDGY K G ++ A ++F+ + E N+
Sbjct: 158 SLLNVYSKSGDIKSARLLFDQV--DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            SWTS+ISG   A +  E   LF RM    +KL N V+  + +  CA  G+   L+   W
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDN-VALVSTLQACADLGV---LDQGKW 271

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                      +    +++ +++   D +    +I  Y   G++ +A E+F  M ++ V 
Sbjct: 272 -----------IHAYIKKHEIEI---DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS 317

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            W AMI  YA +G    A++    M  +   PN+ T T ILT+C
Sbjct: 318 VWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 46/298 (15%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           ++P   ++A+     A  ++G++A A  +F+ + + N + WN MI  Y+ +     A+ L
Sbjct: 50  EIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLL 105

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            + M       N  T   +L +C  M    E    HA  I++GF  E   T       V+
Sbjct: 106 YHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLL--NVY 163

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQVF------------- 328
              G   D+ SARL F++++ +D VSW +MI  Y+  G     +++F             
Sbjct: 164 SKSG---DIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTS 220

Query: 329 ---------------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
                           LF RM  +G K D +  V  L  C+  G++++G K  +   + +
Sbjct: 221 MISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKH 279

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             +        L D+  + G ++EA+ V  KM   E+   V  A++    +HG  R A
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHGRGREA 335


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 27/459 (5%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D Y K  R +EA+KVFD + E N+ SW SLI+ Y +   VDE   LF RM     +
Sbjct: 186 TALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFV 245

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER--------NAMTKL---------A 162
            + V+  +V+  CA  GL A  E     T     +R        NA+  +         A
Sbjct: 246 PDEVTLASVMSACA--GLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEA 303

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           +  F +M  + +V+  +MIT Y  + N+  A  +F  M ++NV  WN +I  YA N  E 
Sbjct: 304 KCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEE 363

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCT 279
            A++L   + +    P   T  ++L +C  +    L   AH   ++ GF  ++       
Sbjct: 364 EALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVF 423

Query: 280 CHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 D   +   ++     FER+ A+D VSW AMI+ Y+ +G       LF RML S 
Sbjct: 424 VGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSN 483

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +PD +T +GVLS C H+GLV++GR+ F  M+  +G  P  +HY+C+ D+L RAG +KE 
Sbjct: 484 ERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEV 543

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             ++  M P E D V+  +LLGACRLH ++ M ++   +L EL P +SG YVL +N++A 
Sbjct: 544 EELIENM-PMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAE 602

Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            G+W +  +VR+ M+ R V K    S IE+  K +  LA
Sbjct: 603 LGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLA 641



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/453 (22%), Positives = 203/453 (44%), Gaps = 60/453 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y + G + +AR+VFD +   N +S+ +L+S   +  + D+   LF  +P    +
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP--D 111

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE----VISWTTMCTGLERNAMTKLAR--EYFVQ 168
             S+  VV   A +G        +A +     V++  +  + L   A  K +R  E    
Sbjct: 112 QCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA 171

Query: 169 MPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           +  K     D+    A++  Y       +A ++F+ MP+RN+ +WN++I  Y +NGP   
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL----GFEQETSL----- 274
           A+ L   M +  F+P+E T  S++++C G+        +  R+     F ++  L     
Sbjct: 232 ALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALV 291

Query: 275 --------TYKCTCHY-------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
                   T++  C +             +   +    +V  A+  F ++  K+VV+W  
Sbjct: 292 DMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNV 351

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT-FNLMSRA 372
           +I  Y+++    +  RLF R+ +    P   T+  VL+ C++   ++ G++   +++   
Sbjct: 352 LIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEG 411

Query: 373 YGFK--PRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           + F   P ++ +  + L D+  + G + +  +V  +M    RD+V   A++     +G  
Sbjct: 412 FRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAA--RDNVSWNAMIVGYAQNGRA 469

Query: 429 RMADYIGERLI---ELQPSSSGAYVLSANVHAA 458
           + A  + ER++   E   S +   VLSA  H+ 
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSG 502



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 64/304 (21%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES-------- 54
           + +EA K+FD M + + VS  S+IT + +N  + +A ALF  M      P+         
Sbjct: 197 RPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMS 256

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + ++V  +A++D Y K GR  EA+ VFD +   +V 
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVV 316

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV 143
           S TS+I+GY K+  V + + +F  + +  KNVV+W  ++   AHN        L  +L+ 
Sbjct: 317 SETSMITGYAKSANVGDAQAVF--LQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKR 374

Query: 144 IS-WTTMCT-GLERNAMTKLAREYFVQM---------------PNKDIVAWNAMITAYVD 186
            S W T  T G   NA   LA     Q                P  D+   N+++  Y+ 
Sbjct: 375 ESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLK 434

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G+++  +++F  M  R+  +WNAMI  YA+NG    A+ L   M  S   P+  T   +
Sbjct: 435 TGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGV 494

Query: 247 LTSC 250
           L++C
Sbjct: 495 LSAC 498



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E     T+ +   R      AR  F  MP+++  ++NA+++A    G    A  LF  +P
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
             +  ++NA++   A++G  G A++ L  M    F+ N  +  S L++C        A  
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSAC--------ASE 160

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV-------NSARLAFERLEAKDVVSWTAM 314
            A R G EQ  +L  K +     +     +D+         A+  F+ +  +++VSW ++
Sbjct: 161 KASRTG-EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSL 219

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y  +G   +   LF RM+K G  PDE+T   V+S C+      +GR+    M ++  
Sbjct: 220 ITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDR 279

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+      + L D+  + G+  EA  V  +M
Sbjct: 280 FREDMVLNNALVDMYAKCGRTWEAKCVFDRM 310



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG + +  K+F+ M+  D VS  +MI  + +N     A  LF  M  S  N   +S  + 
Sbjct: 435 TGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCS--NERPDSVTMI 492

Query: 67  GYVKA----GRVDEARKVFDEIYEGNVY-----SWTSLISGYFKARQVDEGRRLFDRMPL 117
           G + A    G V E R+ F  + E +        +T +I    +A  + E   L + MP+
Sbjct: 493 GVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPM 552

Query: 118 KLKNVVSWTTVVLGC 132
           +  + V W +++  C
Sbjct: 553 E-PDAVLWASLLGAC 566


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 224/439 (51%), Gaps = 34/439 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N    + +ID Y     +  A K+F  + E N+ +WTS+ISGY    +V   RRLFD 
Sbjct: 155 EGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDL 214

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            P +                       +V+ W  M +G       K AR+ F  MP +D 
Sbjct: 215 APER-----------------------DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDT 251

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-LMFQ 233
           ++WN M+  Y + G++    +LF  MP+RNV++WN +I  YA NG     ++    ++  
Sbjct: 252 MSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 311

Query: 234 SRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
              +PN+ T  ++L++C   G L+     H  A  +GF+    +       Y     G  
Sbjct: 312 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYS--KCGL- 368

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             + +A   FE ++ KD+++W +MI   + HG G     LF +M  +G KPD ITF+GVL
Sbjct: 369 --IENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 426

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             C+H GLVE+G   FN M   Y   P+ EHY C+ D+  RAG +  A+  V +M P E 
Sbjct: 427 CSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRM-PMEA 485

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D V+  ALLGACR++ ++ +A+   ++LI L+P +   YVL +N++   G W + A+++ 
Sbjct: 486 DAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKI 545

Query: 471 KM-ERRVKKVASFSQIEVK 488
            M +   KK+   S IEV 
Sbjct: 546 LMRDTGSKKLPGCSLIEVN 564



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +K A KLFD M   D +S  +M+  +  N D+   E LF  MPE  RN+ + + +I G
Sbjct: 234 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPE--RNVFSWNGLIGG 291

Query: 68  YVKAGRVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           Y   G   E  + F     D +   N  +  +++S   +   +D G         K  +V
Sbjct: 292 YAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG---------KWVHV 342

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            + T    G  + G      +I   + C GL  NAM     E F  M  KD++ WN+MI 
Sbjct: 343 YAATIGFKGSIYVG----NALIDMYSKC-GLIENAM-----EVFESMDLKDLITWNSMIC 392

Query: 183 AYVDAGNMAQASELFNLM 200
                G  A A  LF+ M
Sbjct: 393 GLATHGCGADALTLFHQM 410



 Score = 41.6 bits (96), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++T++V    MA A  LF+  P   V  WNA+   Y  N      + L   M      PN
Sbjct: 63  VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T   +L SC      +E    H   I+ G E      +  T     +  G    + SA
Sbjct: 123 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGN---QFVATTLIDVYSGGRA--IGSA 177

Query: 297 RLAFERLEAKDVVSWTAMILAY 318
              F  +  +++V+WT+MI  Y
Sbjct: 178 YKLFVGMLERNIVAWTSMISGY 199


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 271/520 (52%), Gaps = 53/520 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+V  A  LF++M++       SMI+   ++ +  +A  LF  MP   RNI+  ++
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP--ARNIITWTS 197

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           M+ GY K G ++ AR+ FDE+ E +V SW ++ S Y +     E   LF +M  +    +
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257

Query: 122 VVSWTTVVLGCAHNG----------LIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
             +W   +  C+  G          +I +  ++  + + T L     +    ++AR  F 
Sbjct: 258 DTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFD 317

Query: 168 QM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++   ++ V WN MI+AY   G ++ A ELF+ MP+R+V +WN+MI  YA+NG    +++
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 227 LLNLMFQS-RFMPNETTCTSILTSCEGMLENMLAHALA-------IRLGFEQETSLTY-- 276
           L   M       P+E T  S+L++C  +    L++ +        I+LG     SL +  
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMY 437

Query: 277 -KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
            KC              V  A   F+ +  +DVVS+  +I  ++ +GHG +  +L   M 
Sbjct: 438 SKCG------------SVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G +PD +T++GVL+ CSHAGL+ +G+  F  +       P  +HY+C+ D+L RAG++
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 396 KEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            EA  ++  MP  PH     V G+LL A R+H  V + +    +L EL+P + G YVL +
Sbjct: 541 DEAKMLIQSMPMKPHAG---VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 454 NVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDH 492
           N++A+ G W++  +VR+ M++  +KK    S +E KG+ H
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVH 637



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 36/370 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D Y K G+VD AR +F+++ E  +  W S+ISG +K+    E   LF+ MP +   
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR--- 190

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                                +I+WT+M TG  +    + AR YF +MP + +V+WNAM 
Sbjct: 191 --------------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 182 TAYVDAGNMAQASELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +AY       +A  LF+ M +  +     TW   I   +  G    A  +L ++ Q   +
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIV 290

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            N    T++L      +     +    R  F++  S     T + +   +     ++ AR
Sbjct: 291 LNSFVKTALLD-----MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLAR 345

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHA 356
             F+ +  +DVVSW +MI  Y+ +G       LF  M+     +PDE+T   VLS C H 
Sbjct: 346 ELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHI 405

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G ++      +++ R    K     ++ L  +  + G V +A R+   M    RD V   
Sbjct: 406 GALKLSYWVLDIV-REKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGT--RDVVSFN 462

Query: 417 ALLGACRLHG 426
            L+     +G
Sbjct: 463 TLISGFAANG 472



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 26/237 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP---ESQRNI 58
           S +   GK+  A +LFD M + D VS  SMI  + +N +   +  LF+ M    + Q + 
Sbjct: 333 SAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDE 392

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGN----VYSWTSLISGYFKARQVDEGRRLFDR 114
           V  ++++      G +  +  V D + E N    +  + SLI  Y K   V +  R+F  
Sbjct: 393 VTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M    ++VVS+ T++ G A NG   +   +  T    G+E                  D 
Sbjct: 453 M--GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE-----------------PDH 493

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           V +  ++TA   AG + +   +F  +    V  +  M+D   R G    A  L+  M
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSM 550


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 167/560 (29%), Positives = 272/560 (48%), Gaps = 76/560 (13%)

Query: 4   FGCT---GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES 54
           F CT   G V  A K+FDE+ QP      +MI  + R +      +L++ M      P+ 
Sbjct: 76  FCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDG 135

Query: 55  --------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFD 82
                                             N+  +   I  +   G V+ ARK+FD
Sbjct: 136 FTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD 195

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAHNGLI 138
                 V +W  ++SGY + ++ +E +RLF  M  K +    N V+   ++  C+    +
Sbjct: 196 MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDL 255

Query: 139 AKLEVISWTTMCTGLER------NAMTKL---------AREYFVQMPNKDIVAWNAMITA 183
              + I    +  G+        NA+  +         AR  F +M  +D+++W +++T 
Sbjct: 256 VGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTG 315

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           + +   +  A + F+ MP+R+  +W AMID Y R       + L   M  S   P+E T 
Sbjct: 316 FANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTM 375

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW-----DWGFQL-DVNSAR 297
            SILT+C        AH  A+ LG   +T +      +  F      D  F+  +V  A+
Sbjct: 376 VSILTAC--------AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAK 427

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F  ++ KD  +WTAMI+  +N+GHG +   +F+ ML++   PDEIT++GV+  C+H G
Sbjct: 428 KIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVG 487

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LV KG+  F+ M+  +G KP   HY C+ D+L RAG +KEA+ V+  MP  + + +V G+
Sbjct: 488 LVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPV-KPNSIVWGS 546

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRV 476
           LLGACR+H +V++A+     ++EL+P +   YVL  N++AA  +W     VRK  MER +
Sbjct: 547 LLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGI 606

Query: 477 KKVASFSQIEVKGKDHTLLA 496
           KK+   S +E+ G  +  +A
Sbjct: 607 KKIPGCSLMEMNGIVYEFVA 626


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 271/520 (52%), Gaps = 53/520 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+V  A  LF++M++       SMI+   ++ +  +A  LF  MP   RNI+  ++
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP--ARNIITWTS 197

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           M+ GY K G ++ AR+ FDE+ E +V SW ++ S Y +     E   LF +M  +    +
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257

Query: 122 VVSWTTVVLGCAHNG----------LIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
             +W   +  C+  G          +I +  ++  + + T L     +    ++AR  F 
Sbjct: 258 DTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFD 317

Query: 168 QM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++   ++ V WN MI+AY   G ++ A ELF+ MP+R+V +WN+MI  YA+NG    +++
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 227 LLNLMFQS-RFMPNETTCTSILTSCEGMLENMLAHALA-------IRLGFEQETSLTY-- 276
           L   M       P+E T  S+L++C  +    L++ +        I+LG     SL +  
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMY 437

Query: 277 -KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
            KC              V  A   F+ +  +DVVS+  +I  ++ +GHG +  +L   M 
Sbjct: 438 SKCG------------SVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G +PD +T++GVL+ CSHAGL+ +G+  F  +       P  +HY+C+ D+L RAG++
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 396 KEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            EA  ++  MP  PH     V G+LL A R+H  V + +    +L EL+P + G YVL +
Sbjct: 541 DEAKMLIQSMPMKPHAG---VYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 454 NVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDH 492
           N++A+ G W++  +VR+ M++  +KK    S +E KG+ H
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVH 637



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 36/370 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D Y K G+VD AR +F+++ E  +  W S+ISG +K+    E   LF+ MP +   
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR--- 190

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                                +I+WT+M TG  +    + AR YF +MP + +V+WNAM 
Sbjct: 191 --------------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQ 230

Query: 182 TAYVDAGNMAQASELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +AY       +A  LF+ M +  +     TW   I   +  G    A  +L ++ Q   +
Sbjct: 231 SAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIV 290

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            N    T++L      +     +    R  F++  S     T + +   +     ++ AR
Sbjct: 291 LNSFVKTALLD-----MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLAR 345

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHA 356
             F+ +  +DVVSW +MI  Y+ +G       LF  M+     +PDE+T   VLS C H 
Sbjct: 346 ELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHI 405

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G ++      +++ R    K     ++ L  +  + G V +A R+   M    RD V   
Sbjct: 406 GALKLSYWVLDIV-REKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGT--RDVVSFN 462

Query: 417 ALLGACRLHG 426
            L+     +G
Sbjct: 463 TLISGFAANG 472



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 26/237 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP---ESQRNI 58
           S +   GK+  A +LFD M + D VS  SMI  + +N +   +  LF+ M    + Q + 
Sbjct: 333 SAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDE 392

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGN----VYSWTSLISGYFKARQVDEGRRLFDR 114
           V  ++++      G +  +  V D + E N    +  + SLI  Y K   V +  R+F  
Sbjct: 393 VTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M    ++VVS+ T++ G A NG   +   +  T    G+E                  D 
Sbjct: 453 M--GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE-----------------PDH 493

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           V +  ++TA   AG + +   +F  +    V  +  M+D   R G    A  L+  M
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSM 550


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 252/475 (53%), Gaps = 49/475 (10%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------PLKLKN 121
           Y   GR+D +  VF+   E NV+S++++I  + ++R  D     + +M      P    N
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEP----N 144

Query: 122 VVSWTTVVLGCA-HNGLIAKLEVI-----SWTTMCTGL----ERNAMTKLAREYFVQMPN 171
             ++++V+  C+  +G +   + I     S   + TGL     R      AR+ F +MP 
Sbjct: 145 AFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           + +V+   M+T Y   G + +A  LF  M +R+V  WN MI  YA++G    ++KL   M
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264

Query: 232 FQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLGFEQETSLT---YKCTCH 281
             ++ +PNE T  ++L++C   G LE     +       I++     T+L     KC   
Sbjct: 265 LVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCG-- 322

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      +  ARL F+R+  KDVV+W +MI+ Y+ HG      +LF  M ++G KP
Sbjct: 323 ----------SLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            +ITF+G+LS C H GLVE+GR  F LM   YG +P+ EHY C+ ++L RAG ++EA  +
Sbjct: 373 TDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL 432

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           V  M     D V+ G LLG CRLH ++++ + I + L++ + ++SG YVL +N++AA G 
Sbjct: 433 VKNMTI-AADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGN 491

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           W+  A++R  M E  ++K    S IEV  K H  +A     P  +  YV+L E++
Sbjct: 492 WEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEIN 546



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 17/220 (7%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++ V+ R  D+  A  LF  MPE  R++V+ + M+  Y K G +D+AR +F+ + E +V 
Sbjct: 182 LVDVYARGGDVVCARQLFDKMPE--RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVV 239

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            W  +I GY ++   +E  +LF RM L  K + +  TV+   +  G +  LE   W  + 
Sbjct: 240 CWNVMIGGYAQSGVPNESLKLFRRM-LVAKAIPNEVTVLAVLSACGQLGALESGRW--IH 296

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           + +E            +Q+   ++    A+I  Y   G++  A  +F+ +  ++V  WN+
Sbjct: 297 SYIENKG---------IQI---NVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNS 344

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           MI  YA +G    A++L   M ++   P + T   IL++C
Sbjct: 345 MIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSAC 384



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 42/290 (14%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           +Y   G +  +  +FN   + NV++++A+I  + ++     A    + M      PN  T
Sbjct: 88  SYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFT 147

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQE------------------------------- 271
            +S+L SC  +    + H  AI+LG   +                               
Sbjct: 148 FSSVLKSCS-LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERS 206

Query: 272 -TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
             SLT   TC+          +++ AR  FE ++ +DVV W  MI  Y+  G   +  +L
Sbjct: 207 LVSLTTMLTCYSKMG------ELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKL 260

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RML +   P+E+T + VLS C   G +E GR   + +    G +      + L D+  
Sbjct: 261 FRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENK-GIQINVHVGTALIDMYS 319

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           + G +++A  V  ++   ++D V   +++    +HG  + A  + E + E
Sbjct: 320 KCGSLEDARLVFDRI--RDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE 367


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 224/439 (51%), Gaps = 34/439 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N    + +ID Y     +  A K+F  + E N+ +WTS+ISGY    +V   RRLFD 
Sbjct: 197 EGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDL 256

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            P +                       +V+ W  M +G       K AR+ F  MP +D 
Sbjct: 257 APER-----------------------DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDT 293

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-LMFQ 233
           ++WN M+  Y + G++    +LF  MP+RNV++WN +I  YA NG     ++    ++  
Sbjct: 294 MSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 353

Query: 234 SRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
              +PN+ T  ++L++C   G L+     H  A  +GF+    +       Y     G  
Sbjct: 354 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYS--KCGL- 410

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             + +A   FE ++ KD+++W +MI   + HG G     LF +M  +G KPD ITF+GVL
Sbjct: 411 --IENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 468

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             C+H GLVE+G   FN M   Y   P+ EHY C+ D+  RAG +  A+  V +M P E 
Sbjct: 469 CSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRM-PMEA 527

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D V+  ALLGACR++ ++ +A+   ++LI L+P +   YVL +N++   G W + A+++ 
Sbjct: 528 DAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKI 587

Query: 471 KM-ERRVKKVASFSQIEVK 488
            M +   KK+   S IEV 
Sbjct: 588 LMRDTGSKKLPGCSLIEVN 606



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +K A KLFD M   D +S  +M+  +  N D+   E LF  MPE  RN+ + + +I G
Sbjct: 276 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPE--RNVFSWNGLIGG 333

Query: 68  YVKAGRVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           Y   G   E  + F     D +   N  +  +++S   +   +D G         K  +V
Sbjct: 334 YAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG---------KWVHV 384

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            + T    G  + G      +I   + C GL  NAM     E F  M  KD++ WN+MI 
Sbjct: 385 YAATIGFKGSIYVG----NALIDMYSKC-GLIENAM-----EVFESMDLKDLITWNSMIC 434

Query: 183 AYVDAGNMAQASELFNLM 200
                G  A A  LF+ M
Sbjct: 435 GLATHGCGADALTLFHQM 452



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++T++V    MA A  LF+  P   V  WNA+   Y  N      + L   M      PN
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T   +L SC      +E    H   I+ G E      +  T     +  G    + SA
Sbjct: 165 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGN---QFVATTLIDVYSGGRA--IGSA 219

Query: 297 RLAFERLEAKDVVSWTAMILAY 318
              F  +  +++V+WT+MI  Y
Sbjct: 220 YKLFVGMLERNIVAWTSMISGY 241


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 245/459 (53%), Gaps = 18/459 (3%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR+VFD + + +  S+ S+I GY K   ++  R LFD MP
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMP 216

Query: 117 LKLKNVVSWTTVVLGCAH--NGL---------IAKLEVISWTTMCTGLERNAMTKLAREY 165
            + KN++SW +++ G A   +G+         + + ++ISW ++  G  ++   + A++ 
Sbjct: 217 SEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDL 276

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F +MP +D+V W  M+  Y   G + QA  LF+ MPQR+V  +N+M+  Y +N     A+
Sbjct: 277 FDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAI 336

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            + N M  +S   P+ETT   +L++   +    L+ A+ + L +  E             
Sbjct: 337 DIFNDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAMDMHL-YTVEKKFLLGGKLGVAL 393

Query: 285 WDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
            D   +   +  A   FER+E K +  W AMI   + HG G   F +  ++ +   KPD+
Sbjct: 394 IDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDD 453

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G+++ A  ++ 
Sbjct: 454 ITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIE 513

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G W 
Sbjct: 514 EMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWK 572

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREM 501
           E  +VR  M ER+++K+   S IE+ G  H       E+
Sbjct: 573 EVRRVRTMMKERKIQKIPGCSWIELDGSVHEFFVDSMEL 611



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 176/399 (44%), Gaps = 77/399 (19%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GC G    A ++FD MSQ D VS  SMI  +++   +  A  LF  MP  ++N+++ ++M
Sbjct: 172 GCLGF---ARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSM 228

Query: 65  I--------------------------------DGYVKAGRVDEARKVFDEIYEGNVYSW 92
           I                                DGYVK GR+++A+ +FD++   +V +W
Sbjct: 229 INGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTW 288

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN-------GLIAKLEVIS 145
            +++ GY K   V + + LFD+MP   ++VV++ +++ G   N        +   +E  S
Sbjct: 289 ATMVDGYAKLGFVHQAKSLFDQMP--QRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKES 346

Query: 146 W-----TTMCTGLERNA----MTKLAREYFVQMPNKDIVAWN---AMITAYVDAGNMAQA 193
                 TT+   L   A    ++K    +   +  K ++      A+I  Y   G++ QA
Sbjct: 347 HLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQA 406

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             +F  +  +++  WNAMI   A +G   +A  +L  + +    P++ T   +L +C   
Sbjct: 407 MGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNAC--- 463

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV--NSARLAFER-------LE 304
                +H+  ++ G      +  K         +G  +D+   S R+   +       +E
Sbjct: 464 -----SHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIE 518

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSGTKP 341
             DV+ W   + A S+H   F+   L A+  +L++G  P
Sbjct: 519 PNDVI-WRTFLTACSHHKE-FETGELVAKHLILQAGYNP 555



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +D   W A+I ++S+     +   LF  MLK+G   D+ +   VL  CS  G V++G +
Sbjct: 85  VEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQ 144

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
               + R  G        +CL  +  + G +  A +V  +M   +RD V   +++     
Sbjct: 145 XHGFL-RKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMS--QRDSVSYNSMIDGYVK 201

Query: 425 HGDVRMADYIGERLIELQPS 444
            G +  A      L +L PS
Sbjct: 202 CGLIESA----RELFDLMPS 217


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 166/541 (30%), Positives = 274/541 (50%), Gaps = 67/541 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----PESQR------- 56
           G ++ A  LFD++ QP+      +I  +  ++D  K+  LFR M    P   +       
Sbjct: 85  GDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVL 144

Query: 57  --------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     +   ++A++  YV    +  AR+VFD+I +  + 
Sbjct: 145 KACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIV 204

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           SW S+I+GY K    DE   LF  M L+L    +V +  +++   + +  +     +   
Sbjct: 205 SWNSMIAGYSKMGFCDEAILLFQEM-LQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263

Query: 148 TMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
            + TG+E +++               + A+  F QM +KD+V+W +M+ AY + G +  A
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            ++FN MP +NV +WN++I    + G    A++L + M  S  MP++ T  SIL+ C   
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNT 383

Query: 254 LENML---AHALAIRLGFEQETSLTYKCT-CHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            +  L   AH       +  +  +T   T C+ +   +     + +A   F  +  K+VV
Sbjct: 384 GDLALGKQAHC------YICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVV 437

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW  +I A + HG G +   +F  M  SG  PDEITF G+LS CSH+GLV+ GR  F++M
Sbjct: 438 SWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIM 497

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              +   P  EHY+C+ D+L R G + EAM ++ KMP  + D VV GALLGACR++G++ 
Sbjct: 498 ISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPV-KPDVVVWGALLGACRIYGNLE 556

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVK 488
           +A  I ++L+EL   +SG YVL +N+++    WD+  ++RK M+   +KK  + S IE+ 
Sbjct: 557 IAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEID 616

Query: 489 G 489
           G
Sbjct: 617 G 617



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 82/437 (18%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
            +V    ++   V+ G +  A  +FD+I + N + +  LI GY  +    +   LF +M 
Sbjct: 70  QVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMV 129

Query: 116 -PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
               + N  ++  V+  CA      +  ++    +  G+  +A  +              
Sbjct: 130 SAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQ-------------- 175

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA++TAYV    +  A ++F+ +  R + +WN+MI  Y++ G    A+ L   M Q 
Sbjct: 176 ---NAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQL 232

Query: 235 RFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLT------YKCTCHYVFW 285
               +  T  S+L++             H   +  G E ++ +T      Y    H  F 
Sbjct: 233 GVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQF- 291

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF-------------- 328
                     A+  F+++  KDVVSWT+M+ AY+N G   +  Q+F              
Sbjct: 292 ----------AKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSI 341

Query: 329 --------------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
                          LF RM  SG  PD+ T V +LS CS+ G +  G++    +     
Sbjct: 342 ICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI- 400

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
                   + L D+  + G ++ A+ +   MP  E++ V    ++GA  LHG        
Sbjct: 401 ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP--EKNVVSWNVIIGALALHG-------F 451

Query: 435 GERLIELQPS--SSGAY 449
           GE  IE+  S  +SG Y
Sbjct: 452 GEEAIEMFKSMQASGLY 468


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/497 (32%), Positives = 255/497 (51%), Gaps = 40/497 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+I+++ RN  L  A  +F A   S R++V+ +A+I GY   G    ARKVFDEI E +V
Sbjct: 104 SLISMYARNGGLEDARKVFDA--SSHRDVVSCTALITGYASRGDFRSARKVFDEITERDV 161

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAKLEVI 144
            SW ++I+GY +  + +E   LF  M   ++  V     +  +VV  CA +G I      
Sbjct: 162 VSWNAMITGYVENGRYEEALELFKEM---MRTNVRPDEGTLVSVVSACAQSGSIE----- 213

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                   L R   + +  +      +  +   NA+I  Y   G++  A  LF  +  ++
Sbjct: 214 --------LGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKD 265

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V +WN +I  Y        A+ L   M +S   PN+ T  S+L +C  +    +   + +
Sbjct: 266 VVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHV 325

Query: 265 RL-----GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
            +     G   ETSL       Y         D+ +A   F  +  + + SW AMI  ++
Sbjct: 326 YIDKKLKGVTNETSLRTSLIDMYAKCG-----DIEAAHQVFNSMLYRSLSSWNAMIFGFA 380

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HG     F LF+RM  +  +PD+ITFVG+LS CSH+GL++ GR+ F  M++ Y   P+ 
Sbjct: 381 MHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKL 440

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY C+ D+L  +G  KEA  ++  M P E D V+  +LL AC+ HG++ +A+   ++LI
Sbjct: 441 EHYGCMIDLLGHSGLFKEAEEMIHTM-PMEPDGVIWCSLLKACKKHGNLELAESFAQKLI 499

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTL---- 494
           +++P +SG+YVL +N++A  G W++ A+VR  +  + +KKV   S IEV    H      
Sbjct: 500 KIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGD 559

Query: 495 -LAPMREMGYVVLKEVD 510
            L P R   Y +L+E+D
Sbjct: 560 KLHPRRREIYHMLEEMD 576



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 176/386 (45%), Gaps = 56/386 (14%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLI 96
           LP A ++F  + E   N++  + M+ G+  +     A +++  +    +  N YS+  L+
Sbjct: 14  LPYAISVFETIQEP--NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLL 71

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN 156
               K++  +EGR++  ++            + LGC        L+    T++ +   RN
Sbjct: 72  KSCAKSKAFEEGRQIHAQV------------LKLGCG-------LDRYVHTSLISMYARN 112

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
              + AR+ F    ++D+V+  A+IT Y   G+   A ++F+ + +R+V +WNAMI  Y 
Sbjct: 113 GGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYV 172

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276
            NG    A++L   M ++   P+E T  S++++C        A + +I LG +  + +  
Sbjct: 173 ENGRYEEALELFKEMMRTNVRPDEGTLVSVVSAC--------AQSGSIELGRQVHSWVDD 224

Query: 277 KCTCHYVFWDWGFQL----------------DVNSARLAFERLEAKDVVSWTAMILAYSN 320
               H      GF                  DV +A   FE L  KDVVSW  +I  Y++
Sbjct: 225 DDDDH------GFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTH 278

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY-GFKPRA 379
                +   LF  ML+SG  P+++T + VL  C+H G ++ GR     + +   G     
Sbjct: 279 TNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNET 338

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKM 405
              + L D+  + G ++ A +V + M
Sbjct: 339 SLRTSLIDMYAKCGDIEAAHQVFNSM 364



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 169/405 (41%), Gaps = 84/405 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +++A K+FD  S  D VSC ++IT +    D   A  +F  + E  R++V+ 
Sbjct: 107 SMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITE--RDVVSW 164

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGN--------------------------VYSW--- 92
           +AMI GYV+ GR +EA ++F E+   N                          V+SW   
Sbjct: 165 NAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDD 224

Query: 93  --------------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
                          +LI  Y K   V+    LF+   L  K+VVSW T++ G  H  L 
Sbjct: 225 DDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE--GLSCKDVVSWNTLIGGYTHTNLY 282

Query: 139 AKLEVISWTTMCTGLERNAMTKLA-REYFVQMPNKDIVAW-------------------N 178
            +  ++    + +G   N +T L+       +   DI  W                    
Sbjct: 283 KEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRT 342

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           ++I  Y   G++  A ++FN M  R++ +WNAMI  +A +G   AA  L + M  +R  P
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           ++ T   +L++C        +H+  + LG +   S+T           +G  +D+     
Sbjct: 403 DDITFVGLLSAC--------SHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSG 454

Query: 299 AFERLE--------AKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
            F+  E          D V W +++ A   HG+  ++   FA+ L
Sbjct: 455 LFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGN-LELAESFAQKL 498



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 6/175 (3%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FE ++  +++ W  M+  +++         ++ RM+  G  P+  +F  +L  C+ +   
Sbjct: 21  FETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAF 80

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E+GR+    + +      R  H S L  +  R G +++A +V        RD V   AL+
Sbjct: 81  EEGRQIHAQVLKLGCGLDRYVHTS-LISMYARNGGLEDARKVFD--ASSHRDVVSCTALI 137

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
                 GD R A  + + + E    S  A +     +   G ++E  ++ K+M R
Sbjct: 138 TGYASRGDFRSARKVFDEITERDVVSWNAMITG---YVENGRYEEALELFKEMMR 189


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 248/462 (53%), Gaps = 30/462 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   S ++D Y K G + +A++ FDE+ E NV    ++I+G  +   ++E +RLF    
Sbjct: 172 DVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLF--CG 229

Query: 117 LKLKNVVSWTTVVLGCAHNGL------------IAKLEVISWT-----TMCTGLERNAMT 159
           LK ++ +SWT ++ G   NGL            +A   +  +T     T C  L      
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 160 KLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K    Y ++  +KD +   +A++  Y    ++  A  +F  MPQ+NV +W AM+  Y +N
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLT 275
           G    A+K+   M ++   P++ T  S+++SC  +    E    H  A+  G      ++
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL-----IS 404

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
           +    + +   +G      ++   F  +  +D VSWTA++  Y+  G   +   LF RML
Sbjct: 405 FITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERML 464

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
             G KPD +TF+GVLS CS AGLVEKG + F  M + +G  P  +H +C+ D+L RAG++
Sbjct: 465 AHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRL 524

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           +EA   ++ MP H  D V    LL +CR+HGD+ +  +  + LI L+P +  +YVL +++
Sbjct: 525 EEARNFINNMPCHP-DVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSL 583

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +A++G+WD+ AQ+R+ M ++RV+K   +S I+ KGK H   A
Sbjct: 584 YASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSA 625



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 205/452 (45%), Gaps = 46/452 (10%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           +   + QP+     ++IT + +  +L  A  +F  +P  Q N+ + + ++  Y K G + 
Sbjct: 31  ILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP--QPNLFSWNTILSVYSKLGLLS 88

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----PLKLKNVVSWTTVVLG 131
           + +++F+ +   +  SW   ISGY       +  R++  M     + L N ++++T+++ 
Sbjct: 89  QMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNL-NRITFSTMLIL 147

Query: 132 CAH----------NGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           C+           NG I K     +V   + +     +  +   A+ YF +MP +++V  
Sbjct: 148 CSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMC 207

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N MIT  +  G + ++  LF  + +R+  +W  MI    +NG E  A+ +   M  + F 
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFA 267

Query: 238 PNETTCTSILTSCEGML---ENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDW 287
            ++ T  S+LT+C  +L   E    HA  IR   +           +  KC         
Sbjct: 268 MDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCR-------- 319

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                + SA   F+R+  K+V+SWTAM++ Y  +G   +  ++F  M ++G +PD+ T  
Sbjct: 320 ----SIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLG 375

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            V+S C++   +E+G + F+  +   G        + L  +  + G  + + R+ ++M  
Sbjct: 376 SVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM-- 432

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           + RD V   ALL      G       + ER++
Sbjct: 433 NIRDEVSWTALLAGYAQFGKANETIGLFERML 464



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 63/312 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A + FDEM + + V C +MIT  +R   + +++ LF  + E  R+ ++ + MI G
Sbjct: 187 GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKE--RDSISWTIMITG 244

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
            ++ G   EA  +F E+                                       ++ N
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           V+  ++L+  Y K R +     +F RMP   KNV+SWT +++G   NG   +   I +  
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMP--QKNVISWTAMLVGYGQNGFSEEAVKIFFEM 362

Query: 149 MCTGLERNAMT---------KLAR-EYFVQMPNKDIVAW--------NAMITAYVDAGNM 190
              G+E +  T          LA  E   Q   + +V+         NA+IT Y   G+ 
Sbjct: 363 QRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGST 422

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             +  LF  M  R+  +W A++  YA+ G     + L   M      P+  T   +L++C
Sbjct: 423 ENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSAC 482

Query: 251 E--GMLENMLAH 260
              G++E  L +
Sbjct: 483 SRAGLVEKGLQY 494


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/440 (32%), Positives = 225/440 (51%), Gaps = 40/440 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    + +ID Y   G V +A K+F E++E NV +WTS+I+GY  +  +   RRLFD  P
Sbjct: 233 NPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAP 292

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       +V+ W  M +G         AR+ F +MPN+D++ 
Sbjct: 293 ER-----------------------DVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMF 329

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSR 235
           WN ++  Y   GN+     LF  MP+RN+++WNA+I  YA NG     +     M  +S 
Sbjct: 330 WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD 389

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQ 290
             PN+ T  ++L++C        A   A+ LG     + + + L           D   +
Sbjct: 390 VPPNDATLVTVLSAC--------ARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 441

Query: 291 LDV-NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +  +A   F  ++ KD++SW  +I   + H  G     LF +M  +G KPD ITF+G+
Sbjct: 442 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+H GLVE G   F  M+  Y   P+ EHY C+ D+L RAG++++A   V KMP  E
Sbjct: 502 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPV-E 560

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D V+   LLGACR++ +V +A+   +RLIEL+P +   YV+ +N++   G W++ A+++
Sbjct: 561 ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLK 620

Query: 470 KKM-ERRVKKVASFSQIEVK 488
             M +   KK+   S IEV 
Sbjct: 621 VAMRDTGFKKLPGCSLIEVN 640



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 130/278 (46%), Gaps = 25/278 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V +A K+F EM + + V+  SMI  ++ + DL  A  LF   PE  R++V  + 
Sbjct: 244 YSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPE--RDVVLWNI 301

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GY++ G + EARK+F E+   +V  W +++ GY     V+    LF+ MP   +N+ 
Sbjct: 302 MVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMP--ERNIF 359

Query: 124 SWTTVVLGCAHNGLIAKL------------------EVISWTTMCTGLERNAMTKLAREY 165
           SW  ++ G AHNGL  ++                   +++  + C  L    + K    Y
Sbjct: 360 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 419

Query: 166 FVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
                 K ++   NA++  Y   G +  A  +F  M  +++ +WN +I   A +     A
Sbjct: 420 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 479

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAH 260
           + L   M  +   P+  T   IL +C   G++E+  A+
Sbjct: 480 LNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 517



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 124/325 (38%), Gaps = 59/325 (18%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-- 237
           ++T       M  A +LF+ +P  N+  WN+M   YA++    +  +++ L FQ + M  
Sbjct: 139 LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS---ESYREVVFLFFQMKGMDI 195

Query: 238 -PNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE----TSL------------TYK 277
            PN  T   +L SC     ++E    H   I+ GF       T+L             YK
Sbjct: 196 RPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYK 255

Query: 278 CTC-----HYVFW-----DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
             C     + V W      +    D+ SAR  F+    +DVV W  M+  Y   G   + 
Sbjct: 256 IFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEA 315

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHY 382
            +LF  M       D + +  VL   +  G VE     F  M     F   A      H 
Sbjct: 316 RKLFXEM----PNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 371

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
               ++L   G  K  M   S +PP++     L  +L AC   G + +  +     + + 
Sbjct: 372 GLFFEVL---GSFKR-MLSESDVPPND---ATLVTVLSACARLGALDLGKW-----VHVY 419

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQ 467
             SSG   L  NV+      D +A+
Sbjct: 420 AESSG---LKGNVYVGNALMDMYAK 441


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 236/460 (51%), Gaps = 28/460 (6%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLK 118
           +G +  AR VFD I+  N + W ++I GY  +++ +E   L+  M            P  
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFL 124

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           LK   S +        +  I K+    E+ +  ++     ++   K AR  F Q+  +D 
Sbjct: 125 LKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT 184

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+WN+MI  Y   G +  A E+FN MP+RN+ +W +MI      G    A+ L + M  +
Sbjct: 185 VSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTA 244

Query: 235 RFMPNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
               +     S L +C   G+L +    HA   +   E E      C    ++   G   
Sbjct: 245 GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--HEIEIDPILGCVLIDMYAKCG--- 299

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D+  A   F ++E K V  WTAMI  Y+ HG G +    F +M  +G +P+++TF G+L+
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLV + +  F  M R +GFKP  EHY C+ D+L RAG +KEA  ++  MP  + +
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV-KPN 418

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + GALL AC +HG++ +   IG+ LI++ P   G Y+  A++HAA GEW++ A+VR++
Sbjct: 419 AAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQ 478

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEVD 510
           M E+ V K+   S I V G  H  LA   +  +  +KE+D
Sbjct: 479 MKEQGVSKLPGCSVISVNGTAHEFLAG--DESHPQIKEID 516



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 23/224 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ V+ ++ D+  A  LF  +   QR+ V+ ++MIDGY K G ++ A ++F+ + E N+
Sbjct: 158 SLLNVYSKSGDIKSARLLFDQV--DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            SWTS+ISG   A +  E   LF RM    +KL N V+  + +  CA  G+   L+   W
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDN-VALVSTLQACADLGV---LDQGKW 271

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                      +    +++ +++   D +    +I  Y   G++ +A E+F  M ++ V 
Sbjct: 272 -----------IHAYIKKHEIEI---DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS 317

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            W AMI  YA +G    A++    M  +   PN+ T T ILT+C
Sbjct: 318 VWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 46/298 (15%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           ++P   ++A+     A  ++G++A A  +F+ + + N + WN MI  Y+ +     A+ L
Sbjct: 50  EIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLL 105

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            + M       N  T   +L +C  M    E    HA  I++GF  E   T       V+
Sbjct: 106 YHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLL--NVY 163

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQVF------------- 328
              G   D+ SARL F++++ +D VSW +MI  Y+  G     +++F             
Sbjct: 164 SKSG---DIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTS 220

Query: 329 ---------------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
                           LF RM  +G K D +  V  L  C+  G++++G K  +   + +
Sbjct: 221 MISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKH 279

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             +        L D+  + G ++EA+ V  KM   E+   V  A++    +HG  R A
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHGRGREA 335


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/503 (31%), Positives = 252/503 (50%), Gaps = 43/503 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK   A  L D M + D V  +S+I ++ +  DL  A  +   M E      + SA+I G
Sbjct: 191 GKQIHARILIDNM-ELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDD--FSLSALITG 247

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--------L 119
           Y   GR+++AR+ F       V  W SLISGY    +  E   LF+ M  K        L
Sbjct: 248 YANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTL 307

Query: 120 KNVVSWTTVVLGCAHN----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
             ++S  + +    H           GLI    V S         +      A + F ++
Sbjct: 308 ATILSACSSLCNSQHGKQMHAYACKVGLICDNVVAS--AFIDAYSKCGSLNDACKLFSEL 365

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              D +  N+MIT Y ++G +  A ++FN MP +++ +WN+MI   ++NG    A+ L  
Sbjct: 366 KTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFC 425

Query: 230 LMFQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQ--ETSLT-YKCTCH 281
           +M +     N    TS++++C  +      E + A A  + L  ++   TSL  + C C 
Sbjct: 426 MMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKC- 484

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                 GF   +   R  F+ +   D +SW +M++ Y+ +GHG +   LF  M  +G +P
Sbjct: 485 ------GF---IEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRP 535

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            EITF GVLS C H GLV++G + FN+M   Y   P  EHYSC+ D+  RAG ++EAM +
Sbjct: 536 TEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNL 595

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +M P E D  +  ++L  C  HG+  + + + +++IEL P +SGAYV  +++ A  G+
Sbjct: 596 IKRM-PFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGD 654

Query: 462 WDEFAQVRKKM-ERRVKKVASFS 483
           W+  A VRK M ER+V+K   +S
Sbjct: 655 WESSALVRKVMQERQVQKYPGYS 677



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 167/407 (41%), Gaps = 50/407 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A KLFDEM   +  S  +MI  ++++ +  ++  LF  M  S +N  + + +  G
Sbjct: 55  GSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMM--SNKNDYSWNVVFSG 112

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL-----KLKNV 122
           + KAG ++ AR++F+E+   N   W S+I  Y +     E  RLF  + L        + 
Sbjct: 113 FAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDT 172

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM--TKLAREY------------FVQ 168
               TV+  C   G I   + I    +   +E +++  + L   Y               
Sbjct: 173 FVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNT 232

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           M   D  + +A+IT Y + G M  A   F       V  WN++I  Y  N  E  A  L 
Sbjct: 233 MEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLF 292

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG--------------FEQE 271
           N M +     + +T  +IL++C  +  +      HA A ++G              + + 
Sbjct: 293 NDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKC 352

Query: 272 TSLTYKC-------TCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYS 319
            SL   C       T   +  +    +  NS ++      F  + +K ++SW +MI+  S
Sbjct: 353 GSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLS 412

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
            +G   +   LF  M K   + +      V+S C+    +E G + F
Sbjct: 413 QNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIF 459



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 171/423 (40%), Gaps = 59/423 (13%)

Query: 39  HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
           H   +   LF      Q  +   + ++  Y + G + +A K+FDE+   N +SW ++I G
Sbjct: 22  HQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEG 81

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158
           Y K+   +   RLFD M    KN  SW  V  G A  G +                    
Sbjct: 82  YMKSGNKERSIRLFDMM--SNKNDYSWNVVFSGFAKAGEM-------------------- 119

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF---NLMPQRNVWTWNAMIDRY 215
            ++AR  F +MPN++ V WN+MI +Y   G+  +A  LF   NL P        +  D +
Sbjct: 120 -EIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLD-----KSCCDTF 173

Query: 216 ARNGPEGAAMKLLNL----MFQSRFMPNETTCTSILTS--------CEGMLENMLAHALA 263
                 GA   L  +       +R + +     S+LTS        C G L++  AH + 
Sbjct: 174 VLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKC-GDLDS--AHCVL 230

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
             +    + SL+   T       +     +N AR AF R     VV W ++I  Y  +  
Sbjct: 231 NTMEEPDDFSLSALIT------GYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNE 284

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             + F LF  M K G K D  T   +LS CS     + G++      +  G        S
Sbjct: 285 EIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKV-GLICDNVVAS 343

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
              D   + G + +A ++ S++  +  D ++L +++      G +  A    +++    P
Sbjct: 344 AFIDAYSKCGSLNDACKLFSELKTY--DTILLNSMITVYSNSGKIEDA----KQIFNTMP 397

Query: 444 SSS 446
           S S
Sbjct: 398 SKS 400



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 45/277 (16%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAM 64
           +GK+++A ++F+ M     +S  SMI    +N    +A  LF  M   + + N    +++
Sbjct: 383 SGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSV 442

Query: 65  IDGYVKAGRVDEARKVF----------DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           I        ++   ++F          DE+        TSL+  Y K   ++ GR+LFD 
Sbjct: 443 ISACASISSLELGEQIFARATVVGLDSDEVIS------TSLVDFYCKCGFIEIGRKLFDT 496

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M +K  + +SW ++++G A NG               GLE   +    R   V+ P +  
Sbjct: 497 M-MK-SDEISWNSMLMGYATNG--------------HGLEALTLFNEMRHAGVR-PTE-- 537

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           + +  +++A    G + +    FN+M         +  ++ M+D +AR G    AM L+ 
Sbjct: 538 ITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIK 597

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
            M    F  + +  +S+L  C    E  L   +A ++
Sbjct: 598 RM---PFEADASMWSSVLRGCMAHGEKDLGEKVAQQI 631


>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
          Length = 769

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 253/501 (50%), Gaps = 56/501 (11%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFR---AMPESQRNIVAESAMIDGYVKAGRVDE 76
           M   D  S ++M++ F +N  L +AE L     ++ +  + + A + +I  Y +AGR  +
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 77  ARKVFDEI--------------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           A+++FD I              +E NV SW S++  Y KA  V   R LF+ MP K    
Sbjct: 61  AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK---- 116

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
                              +++SW TM +G  + +  K + + F +MP+ D V+WN +I 
Sbjct: 117 -------------------DLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQ 157

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            ++  G    A   F+ MP+R   +WN MI  Y +NG   +++KL + M +   +P+  T
Sbjct: 158 GFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHT 217

Query: 243 CTSILTSCEGMLENMLA-----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            +S+L +C  +   ML      H L +   F  +T+++      Y          +N A 
Sbjct: 218 FSSVLAACASI--PMLGLGAQIHQL-VEKSFVPDTAISNALITMYSRCG-----ALNDAE 269

Query: 298 LAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
             F+++  K D+VSW A+I  Y +HG   +  +LF  M ++   P  ITFV +LS C +A
Sbjct: 270 AIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNA 329

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV +GR  F+ M   YG   R EHY+ L +++ R GQ+ +A+ V++ M P   D  V G
Sbjct: 330 GLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSM-PMAPDRSVWG 388

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           A LGAC    +  +A    + L  + P SS  YVL  N+HA  G+W   A VR++MER+ 
Sbjct: 389 AFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQG 448

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           + K   +S I+++GK H  ++
Sbjct: 449 IYKQPGYSWIDLEGKMHVFIS 469



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 70/296 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G+  +A +LFD            MI      H++ K +         +RN+V+ ++
Sbjct: 52  YGQAGRFSDAKRLFD------------MIPKGQYQHNMLKRKGF-------ERNVVSWNS 92

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+  Y+KAG V  AR +F+E+ + ++ SW ++ISGY +A  + E  +LF  MP    + V
Sbjct: 93  MMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP--DPDTV 150

Query: 124 SWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQM---- 169
           SW  ++ G    G           + +   ISW TM +G E+N     + + F +M    
Sbjct: 151 SWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVG 210

Query: 170 --PNK--------------------------------DIVAWNAMITAYVDAGNMAQASE 195
             P++                                D    NA+IT Y   G +  A  
Sbjct: 211 EIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEA 270

Query: 196 LFNLM-PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +F  M  ++++ +WNA+I  Y  +G    A++L   M +++ MP   T  S+L++C
Sbjct: 271 IFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSAC 326


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 246/469 (52%), Gaps = 32/469 (6%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D +   ++++++ +   L  A   F  MP+  RN+++ +A++ GY  AG +D A  +F  
Sbjct: 90  DLLVGTTIVSMYCKCGALADARRAFDEMPD--RNVISYNALLAGYAVAGDMDGALALFGG 147

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +      +W +LI G+ +   + E RR F+  P  ++ VV+WT +V G            
Sbjct: 148 MRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQG------------ 195

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                +C G       + ARE F +MP ++   W++M+T Y  AG+  +A  +F+ +P R
Sbjct: 196 ----YVCAG-----DMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTR 246

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           N+  WNA+I  YA+ G    A++  +LM Q R  P+E T  S+L++C  +    L     
Sbjct: 247 NLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQL--GSLEQGKK 304

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           +     QE         + +   +    D+  AR  F+ +  K+   W  MI A ++HG 
Sbjct: 305 VHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQ 364

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   LF +M +SG KP+ IT + VL  C+H G V++G + FN +  AYG +   EHY 
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVEAGVEHYG 423

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ- 442
           CL D+L RAG++KEA  +V+ M   E + V+ G+LLGACR+H D  M+  + E ++ L  
Sbjct: 424 CLVDLLGRAGKLKEAYEIVNNM-SEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHS 482

Query: 443 ---PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEV 487
               S+   Y++ AN+ AA   W++  Q+R+KM RR V+K    S +E+
Sbjct: 483 FHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G +  A  LF  M     V+ A++I  F    D+ +A   F A P   R +V  + 
Sbjct: 132 YAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTV 191

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++ GYV AG ++ AR+VFD +   N + W+S+++GYFKA   +E R +FDR+P   +N+V
Sbjct: 192 LVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIP--TRNLV 249

Query: 124 SWTTVV-----LGCAHNGLIA------------KLEVISWTTMCTGLERNAMTKLAREYF 166
           +W  ++     +GC+   L A            +  + S  + C  L      K   ++ 
Sbjct: 250 NWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFI 309

Query: 167 VQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
            Q    K+    N +I  Y   G++A A  +F+ M  +N   WN MI   A +G    A+
Sbjct: 310 NQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEAL 369

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
            L   M +S   PN  T  ++L +C
Sbjct: 370 HLFFQMERSGRKPNTITVLAVLGAC 394


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 175/615 (28%), Positives = 278/615 (45%), Gaps = 144/615 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----------- 55
           TG +  A ++FD+MSQ D +S  ++I+ ++  +D  +A  LF+ M               
Sbjct: 62  TGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSL 121

Query: 56  ---------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       ++   SA++D Y K G++ E R+VF E+   N
Sbjct: 122 AHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRN 181

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLI-------- 138
           V SWT++I+G  +A    E    F  M        S+T  +    CA +G +        
Sbjct: 182 VVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHA 241

Query: 139 ------------------------AKLE-------------VISWTTMCTGLERNAMTKL 161
                                    KLE             V+SWTT+ T L +    + 
Sbjct: 242 QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEEC 301

Query: 162 AREYFVQMPNKDI-------------------VAW--------------------NAMIT 182
           A + F++M   D+                   + W                    N+++T
Sbjct: 302 AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMT 361

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  +S +F+ M +R++ +W+ +I  Y++ G    A +LL+ M      P E  
Sbjct: 362 MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFA 421

Query: 243 CTSILTSCEGM--LEN-MLAHALAIRLGFEQ-----ETSLTYKCTCHYVFWDWGFQLDVN 294
             S+L++C  M  LE+    HA  + +G E         +   C C            + 
Sbjct: 422 LASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG----------SIE 471

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F+  E  D+VSWTAMI  Y+ HG+  +V  LF ++ + G +PD +TF+GVLS CS
Sbjct: 472 EASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV+ G + FN MS+ Y   P  EHY C+ D+L RAG++ +A  ++  MP H RD VV
Sbjct: 532 HAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFH-RDDVV 590

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
              LL ACR+HGDV       ER+++L+P+ +G ++  AN++A++G+W E A +RK M+ 
Sbjct: 591 WSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKS 650

Query: 475 R-VKKVASFSQIEVK 488
           + V K   +S I+VK
Sbjct: 651 KGVIKEPGWSWIKVK 665



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 28/322 (8%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           SQ ++   +  +   VK G +  AR++FD++ + +  SWT+LISGY  A    E   LF 
Sbjct: 45  SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFK 104

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            M  ++++ +     +L  AH       +V ++  +  G      T L    FV      
Sbjct: 105 NM--RVESGLRIDPFILSLAHKACGLNSDV-NYGELLHGYA--VKTGLVNSVFVG----- 154

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               +A++  Y   G + +   +F+ MP RNV +W A+I    R G    A+   + M++
Sbjct: 155 ----SALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 234 SRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYV---FWDW 287
           SR   +  T    L +C   G L      HA A++ GF+  + +       Y      ++
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEY 270

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G  L        FE++  +DVVSWT +I      G      + F RM +S   P+E TF 
Sbjct: 271 GLTL--------FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFA 322

Query: 348 GVLSDCSHAGLVEKGRKTFNLM 369
            V+S C++   +E G +   L+
Sbjct: 323 AVISGCANLARIEWGEQLHALI 344


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 265/523 (50%), Gaps = 45/523 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++EA +LFDEM   +  S  +MIT F     + KA  +F AMP+  ++  + SAM+ G
Sbjct: 146 GLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPD--KDSASLSAMVSG 203

Query: 68  YVKAGRVDEARKVFDEIY-----EGNVYSWTSLISGYFKARQVDEGRRLFDRMP------ 116
           +++ GR+ EA  +  +       +  V ++ +LI+ Y +  +V + RRLF  +P      
Sbjct: 204 FIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQH 263

Query: 117 ------LKLKNVVSWTTVVLG-------CAHNGLIAKL---EVISWTTMCTGLERNAMTK 160
                 +  +NVVSW ++++        C+   L  ++   +++SW TM  G  + +  +
Sbjct: 264 KGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEME 323

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A + F ++P+ D V WN MI  +   G++  A   F+ MP+R+  TWN MI  Y +N  
Sbjct: 324 EAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNED 383

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-----QETSLT 275
             + +KL   M +    P+  T +S+L +C  +          +RLG +     +++ L 
Sbjct: 384 YDSTIKLFQRMLEVGERPDHHTLSSVLAACASLA--------MLRLGAQLHQLIEKSFLP 435

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARM 334
              T + +   +    ++ SA+  F  +   +D+VSW A+I  Y   G+  +  RLF  M
Sbjct: 436 DTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEM 495

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
             +   P  ITF+ +LS C +AGLV +GR  F+ M   YG     EHY+ L +++ R GQ
Sbjct: 496 RSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQ 555

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +++A+ ++  MP    D  V GA LGAC    +  +A+     L ++ P SS  YVL  N
Sbjct: 556 LEDALELIKSMPI-APDRAVWGAFLGACTAKKNEPLAEMAANALSKIDPDSSAPYVLMHN 614

Query: 455 VHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +HA  G W   + VR+ MER  + K   +S I++  K H  ++
Sbjct: 615 LHAHEGRWGSASLVREDMERLGIHKHPGYSWIDLHDKVHVFIS 657



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 200/454 (44%), Gaps = 53/454 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+   A +LFD +     V+  S++    R  D+  A   F AMP   R+I++ + ++  
Sbjct: 50  GRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMP--VRDIISWNTLLSA 107

Query: 68  YVKAGRVDE---ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           Y ++ + ++   AR++F E+ + +  SW++L+  Y +   ++E +RLFD MP   +N  S
Sbjct: 108 YARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP--HRNASS 165

Query: 125 WTTVVLGCAHNGLIAK-LEVI---------SWTTMCTGLERN-----AMTKLAREYFVQM 169
           W T++ G    G + K L V          S + M +G  RN     A   L +   V  
Sbjct: 166 WNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTVMD 225

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMP--------------QRNVWTWNAMIDRY 215
            +K + A+N +I AY   G +  A  LF+++P              +RNV +WN+M+  Y
Sbjct: 226 MDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCY 285

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
            R G   +A  L + M     +   T       + E      +  A  +        ++T
Sbjct: 286 IRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASE------MEEAEKLFWEVPDPDAVT 339

Query: 276 YKCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +           GF  + DV  AR  F+R+  +  ++W  MI  Y  +       +LF R
Sbjct: 340 WNLMIR------GFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQR 393

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML+ G +PD  T   VL+ C+   ++  G +   L+ ++  F P     + L  +  R G
Sbjct: 394 MLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEKS--FLPDTATNNALMTMYSRCG 451

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
           ++  A  +   M   +RD V   AL+G     G+
Sbjct: 452 ELISAKAIFGHMHT-QRDIVSWNALIGGYEQQGN 484



 Score = 38.9 bits (89), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 40/294 (13%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N  +   +  G  + A  LF+ +P R+V TWN+++   +R    G+ ++     F +  +
Sbjct: 40  NRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSR----GSDVRAARCFFDAMPV 95

Query: 238 PNETTCTSILTSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            +  +  ++L++    L+ N LA A  +     Q  ++++  T    +   G    +  A
Sbjct: 96  RDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWS-TLLGAYTRRGL---MEEA 151

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +  F+ +  ++  SW  MI  +   G   +   +FA M       D  +   ++S     
Sbjct: 152 QRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAM----PDKDSASLSAMVSGFIRN 207

Query: 357 GLVEKG------RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           G + +       R T   M +A G       ++ L     + G+V +A R+ S +P  + 
Sbjct: 208 GRLHEADDLLTKRLTVMDMDKAVGA------FNTLIAAYGQTGRVTDARRLFSMIPKTQN 261

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
            H             G  RM   + ER +    S    Y+ + +V +AR  +DE
Sbjct: 262 QH------------KGHKRM---VFERNVVSWNSMMMCYIRTGDVCSARALFDE 300


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 245/469 (52%), Gaps = 32/469 (6%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D +   ++++++ +   L  A   F  MP+  RN+++ +A++ GY  AG +D A  +F  
Sbjct: 90  DLLVGTTIVSMYCKCGALADARRAFDEMPD--RNVISYNALLAGYAVAGDMDGALALFGG 147

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +      +W +LI G+ +   + E RR F+  P  ++ VV+WT +V G            
Sbjct: 148 MRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQG------------ 195

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                +C G       + ARE F +MP ++   W++M+T Y  AG+  +A  +F+ +P R
Sbjct: 196 ----YVCAG-----DMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTR 246

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           N+  WNA+I  YA+ G    A++  +LM Q R  P+E T  S+L++C  +    L     
Sbjct: 247 NLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQL--GSLEQGKK 304

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           +     QE         + +   +    D+  AR  F+ +  K+   W  MI A ++HG 
Sbjct: 305 VHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQ 364

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   LF +M +SG KP+ IT + VL  C+H G V++G + FN +  AYG     EHY 
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVGAGVEHYG 423

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ- 442
           CL D+L RAG++KEA  +V+ M   E + V+ G+LLGACR+H D  M+  + E ++ L  
Sbjct: 424 CLVDLLGRAGKLKEAYEIVNNM-SEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHS 482

Query: 443 ---PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEV 487
               S+   Y++ AN+ AA   W++  Q+R+KM RR V+K    S +E+
Sbjct: 483 FHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G +  A  LF  M     V+ A++I  F    D+ +A   F A P   R +V  + 
Sbjct: 132 YAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTV 191

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++ GYV AG ++ AR+VFD +   N + W+S+++GYFKA   +E R +FDR+P   +N+V
Sbjct: 192 LVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIP--TRNLV 249

Query: 124 SWTTVV-----LGCAHNGLIA------------KLEVISWTTMCTGLERNAMTKLAREYF 166
           +W  ++     +GC+   L A            +  + S  + C  L      K   ++ 
Sbjct: 250 NWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFI 309

Query: 167 VQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
            Q    K+    N +I  Y   G++A A  +F+ M  +N   WN MI   A +G    A+
Sbjct: 310 NQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEAL 369

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
            L   M +S   PN  T  ++L +C
Sbjct: 370 HLFFQMERSGRKPNTITVLAVLGAC 394


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/425 (34%), Positives = 219/425 (51%), Gaps = 47/425 (11%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG 131
           G   +ARKVFDE+   +V  W  +I  Y     V   ++LF+ M  +             
Sbjct: 90  GMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDR------------- 136

Query: 132 CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
                     + +SW TM +G  +      ARE F +MP K++V+W +MI+AY  AG++A
Sbjct: 137 ----------DTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYAKAGDLA 186

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A   FN MPQRNV +WN+MI  Y ++G    A+ L N M      P+  T  S+ ++C 
Sbjct: 187 TARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACS 246

Query: 252 GMLENMLAHAL--AI----RLGFEQETSLT---YKCTCHYVFWDWGFQLDVNSARLAFER 302
            +   ML   +  AI    +LG    T+L     KC             D+N A   F +
Sbjct: 247 HLGNLMLGTKIHYAIDDFSQLGVIAATALIEMYAKCG------------DINRAFNLFIK 294

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  KDV  W  M+ + + HG      +LF+ M K G KP++ TF+G L  CSH G+VE+G
Sbjct: 295 IGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEG 354

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
           +  F++M + Y  +PR EH+ C+ D+L R G+++EA+ VV KM P E D  + GALLG C
Sbjct: 355 QTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKM-PFEADVAIWGALLGGC 413

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VKKVA 480
           +L GD + A  I ER  +L+    G +V  +N++A+  +W E    R+KME    +KK  
Sbjct: 414 KLRGDFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTG 473

Query: 481 SFSQI 485
             S I
Sbjct: 474 QSSVI 478



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 25/268 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   +A K+FDEM          MI  +    D+  A+ LF  M +  R+ V+ + MI G
Sbjct: 90  GMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMED--RDTVSWNTMISG 147

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y+K G V +AR++F+++ E NV SWTS+IS Y KA  +   R  F++MP   +NVVSW +
Sbjct: 148 YIKVGEVMKARELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMP--QRNVVSWNS 205

Query: 128 VVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREYFV-QM 169
           ++     +G   +                    +S  + C+ L  N M      Y +   
Sbjct: 206 MISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLG-NLMLGTKIHYAIDDF 264

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
               ++A  A+I  Y   G++ +A  LF  + +++V+ WN M+   A +G    A+KL +
Sbjct: 265 SQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFS 324

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE 255
           LM +    PN+ T    L +C   GM+E
Sbjct: 325 LMQKQGLKPNDFTFLGALFACSHGGMVE 352



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 118/276 (42%), Gaps = 45/276 (16%)

Query: 156 NAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           + M   AR+ F +M  + +  WN MI  Y   G+++ A +LFN M  R+  +WN MI  Y
Sbjct: 89  DGMASDARKVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGY 148

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
            + G    A +L   M +     N  + TS+++          A+A A            
Sbjct: 149 IKVGEVMKARELFEKMPEK----NVVSWTSMIS----------AYAKAG----------- 183

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                           D+ +AR+ F ++  ++VVSW +MI +Y  HG   +   LF +ML
Sbjct: 184 ----------------DLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQML 227

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
             G  PD  TFV V S CSH G +  G K    +         A   + L ++  + G +
Sbjct: 228 SEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAA--TALIEMYAKCGDI 285

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             A  +  K+   ++D      +L +  LHG  + A
Sbjct: 286 NRAFNLFIKIG--KKDVFFWNVMLKSLALHGQAQDA 319



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 37/281 (13%)

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLG 267
           MI  YA NGP   ++ L   + Q    P+  T   +L SC  +    +    H   ++ G
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60

Query: 268 FEQETSLTYKCTCHYV-FWDWGFQLD-----VNSARLAFERLEAKDVVSWTAMILAYSNH 321
           F   +S++      YV F  +    D      + AR  F+ +  + V  W  MIL Y++ 
Sbjct: 61  FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G      +LF  M       D +++  ++S     G V K R+ F  M      +     
Sbjct: 121 GDVSGAQKLFNTM----EDRDTVSWNTMISGYIKVGEVMKARELFEKMP-----EKNVVS 171

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA-DYIGERLIE 440
           ++ +     +AG +  A    +KMP  +R+ V   +++ +   HGD + A D   + L E
Sbjct: 172 WTSMISAYAKAGDLATARMFFNKMP--QRNVVSWNSMISSYVQHGDFQEALDLFNQMLSE 229

Query: 441 -LQP------------SSSGAYVLSANVHAARGEWDEFAQV 468
            + P            S  G  +L   +H A    D+F+Q+
Sbjct: 230 GITPDGYTFVSVFSACSHLGNLMLGTKIHYAI---DDFSQL 267


>gi|147820355|emb|CAN67654.1| hypothetical protein VITISV_038410 [Vitis vinifera]
          Length = 492

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 228/453 (50%), Gaps = 36/453 (7%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A ALF    E   +++  +  I  Y   G VD AR +F+E+   +  SW  +I GY +  
Sbjct: 37  AYALFHMRKE---DVLMLTKRISDYSLKGEVDYARTIFEEMSHPDTVSWNVMIRGYVENH 93

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
           ++ + R LFD+MP++                         +SW TM     +   T +A 
Sbjct: 94  RIGDARELFDKMPVR-----------------------SSVSWNTMIMAYAKEGKTHIAM 130

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + F+ MP+KD+V+W A+ITA     ++  A  LF LMP+ +  +W ++I  + +NG    
Sbjct: 131 KLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLFKLMPEPSSVSWASIISGFQQNGLAAE 190

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTC 280
            +     M      P   + TS LT+   +    L+  L  +L   GFE  T +      
Sbjct: 191 TLCRFKEMLSVGVQPTSHSFTSALTASADLAMLSLSQQLYSQLLKRGFESNTXIGNSAIS 250

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            ++           +AR   E L   D+V+W AM++ Y  +G+G +    F +M K+   
Sbjct: 251 MFIK-----SGSFRNARRVLEDLPQPDIVTWNAMVVGYGQNGYGIEAIMSFHQMQKAKFL 305

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD ++F+G+L  CSH G VEKG++ F  M   YG  P  EHY+C+ D+L RAG +KEA +
Sbjct: 306 PDRVSFLGLLHGCSHCGYVEKGKQYFRSMESNYGISPGPEHYACMVDLLSRAGFLKEAHK 365

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++ +M P E   +    LL  CR+ GD+ +  Y   R++EL P +S A ++  +++A+ G
Sbjct: 366 LIKEM-PFEPTCIFWRTLLNGCRIWGDLELGFYAANRILELDPYNSSACLMVIDIYASAG 424

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
            W E  ++R++M +R  +K    S IE+KG+ H
Sbjct: 425 RWKEVLEMRRQMRKREARKELGCSWIEIKGRIH 457



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 22/267 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G+V  A  +F+EMS PD VS   MI  ++ NH +  A  LF  MP   R+ V+ 
Sbjct: 56  SDYSLKGEVDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDARELFDKMP--VRSSVSW 113

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + MI  Y K G+   A K+F  + + +V SWT++I+   +   +++  RLF  MP    +
Sbjct: 114 NTMIMAYAKEGKTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLFKLMP--EPS 171

Query: 122 VVSWTTVVLGCAHNGLIAKL-----EVI---------SWTTMCTGLERNAMTKLAREYFV 167
            VSW +++ G   NGL A+      E++         S+T+  T     AM  L+++ + 
Sbjct: 172 SVSWASIISGFQQNGLAAETLCRFKEMLSVGVQPTSHSFTSALTASADLAMLSLSQQLYS 231

Query: 168 QMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Q+  +    +    N+ I+ ++ +G+   A  +   +PQ ++ TWNAM+  Y +NG    
Sbjct: 232 QLLKRGFESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVGYGQNGYGIE 291

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+   + M +++F+P+  +   +L  C
Sbjct: 292 AIMSFHQMQKAKFLPDRVSFLGLLHGC 318


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 225/424 (53%), Gaps = 45/424 (10%)

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           ++F  + E +V SW S+I G  K  ++ E  +LFD MP+K  + VSW T++ G    G +
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK--DAVSWNTILDGYVKAGEM 59

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
            K                     A   F  MP +++V+W+ M++ Y  AG+M  A  LF+
Sbjct: 60  NK---------------------AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFD 98

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            MP +N+ +W  ++  YA  G    A++    M ++   P++ T  SIL SC        
Sbjct: 99  RMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASC-------- 150

Query: 259 AHALAIRLGFEQETSLT---YKCTCHY------VFWDWGFQLDVNSARLAFERLEAKDVV 309
           A +  + LG    TS+    YKC+ +       ++   G    V+ A   F  +  KD+V
Sbjct: 151 AESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCG---QVDRALSVFNGMSKKDLV 207

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW  M+   + HGHG +  +LF+ M + G +PD++T V VL  C HAG V++G + FN M
Sbjct: 208 SWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNM 267

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            R YG  P  EHY C+ D+L R G++KEA R+V  MP  E + V+ G LLGACR+H  V 
Sbjct: 268 ERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPV-EPNVVIWGTLLGACRMHNAVG 326

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVK 488
           +A+ + + L +L+PS  G Y L +N+ A+ G+W   A VR +M+   ++K +  S IEV 
Sbjct: 327 LAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASSIEVD 386

Query: 489 GKDH 492
            + H
Sbjct: 387 DEVH 390



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 137/258 (53%), Gaps = 30/258 (11%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           +LF  M + D VS  SMI   L+  +L +A  LF  MP   ++ V+ + ++DGYVKAG +
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMP--MKDAVSWNTILDGYVKAGEM 59

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           ++A  +F+ + E NV SW++++SGY KA  ++  R LFDRMP  +KN+VSWT +V G A 
Sbjct: 60  NKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMP--VKNLVSWTIIVSGYAV 117

Query: 135 NGL----IAKLE-------------VISWTTMCT-----GLERNAMTKLAREYFVQMPNK 172
            GL    I   E             VIS    C      GL +   T + R  +    N 
Sbjct: 118 KGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNV 177

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                NA++  Y   G + +A  +FN M ++++ +WN M+   A +G    A++L ++M 
Sbjct: 178 S----NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMR 233

Query: 233 QSRFMPNETTCTSILTSC 250
           Q  F P++ T  ++L +C
Sbjct: 234 QEGFRPDKVTLVAVLCAC 251


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 174/601 (28%), Positives = 282/601 (46%), Gaps = 107/601 (17%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-------- 53
           S +  +G++ +A  +F EM + DPVS   M+    R     +A  +F  M          
Sbjct: 104 SLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQF 163

Query: 54  SQRNIVAESA-----------------------------MIDGYVKAGRVDEARKVFDEI 84
           +  N+++  A                             +++ Y K G  + AR VF+ +
Sbjct: 164 TLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERM 223

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL--- 141
            E +V SW +++S      ++D    LF+ MP +   +VSW  V+ G   NGL AK    
Sbjct: 224 PERSVSSWNAMVSLDAHLGRMDLALSLFENMPDR--TIVSWNAVIAGYNQNGLNAKALWF 281

Query: 142 --EVISWTTM-------------CTGLERNAMTKLAREYFVQ------------------ 168
              ++S++TM             C  L   ++ K    Y ++                  
Sbjct: 282 FSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYA 341

Query: 169 ----------------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
                           M + +++++ A++  YV  G+M  A E+F++M  R+V  W AMI
Sbjct: 342 KSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMI 401

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFE 269
             Y +NG    AM+L  LM +S   PN  T  ++L+ C  +  LE     H  AIR   E
Sbjct: 402 VGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQE 461

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGHGFQVF 328
           Q +S++      Y          +  AR  F+R+   K+ V+WT+MI+A + HG G    
Sbjct: 462 QSSSVSNSIVTMY-----ARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAV 516

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  ML+ G KPD ITFVGVLS C+H G V++G++ F  +   +G  P   HY+C+ D+
Sbjct: 517 GLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDL 576

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG   EA   + +MP  E D +  G+LL ACR+H +  +A+   E+L+ + P +SGA
Sbjct: 577 LARAGLFSEAQEFIQQMPV-EPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGA 635

Query: 449 YVLSANVHAARGEWDEFAQV-RKKMERRVKKVASFSQIEVKGKDHT-----LLAPMREMG 502
           Y   +NV++A G W++ A++ +++ ++ VKK   FS   +  + H      +L P R+  
Sbjct: 636 YSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTV 695

Query: 503 Y 503
           Y
Sbjct: 696 Y 696



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 48/370 (12%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +A  LF  +P +QRN+   ++++  Y K+GR+ +AR VF E+ E +  SWT ++ G  + 
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRV 140

Query: 103 RQVDEGRRLFDRM--------PLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTTMC 150
            +  E  ++F  M           L NV+S         +G   +  + KL + S   + 
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 151 TGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
             +     +    + AR  F +MP + + +WNAM++     G M  A  LF  MP R + 
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIV 260

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTCTSILTSCE--GML---ENMLAH 260
           +WNA+I  Y +NG    A+   + M   S   P+E T TS+L++C   GM+   + + A+
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAY 320

Query: 261 ALAIRL------------------------GFEQETSLTYKCTCHYVFWDWGFQL--DVN 294
            L  R+                        G  Q+  +       +     G+    D+ 
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F+ +  +DVV+WTAMI+ Y  +GH  +   LF  M++SG +P+  T   VLS C+
Sbjct: 381 HAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCA 440

Query: 355 HAGLVEKGRK 364
               +E G++
Sbjct: 441 SLACLEYGKQ 450



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 136/306 (44%), Gaps = 41/306 (13%)

Query: 162 AREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           AR  F ++P   +++  WN++++ Y  +G +A A  +F  MP+R+  +W  M+    R G
Sbjct: 82  ARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVG 141

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTY 276
             G A+K+   M      P + T T++L+SC   E        H+  ++LG      +  
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 277 -------KC----TCHYVF----------WDWGFQLDVNSARL-----AFERLEAKDVVS 310
                  KC    T   VF          W+    LD +  R+      FE +  + +VS
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           W A+I  Y+ +G   +    F+RML   T  PDE T   VLS C++ G+V  G++     
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV---- 317

Query: 370 SRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
             AY  + R  +     + L  +  ++G V+ A  V+ +    + + +   ALL      
Sbjct: 318 -HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKL 376

Query: 426 GDVRMA 431
           GD++ A
Sbjct: 377 GDMKHA 382


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 236/451 (52%), Gaps = 46/451 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++A+++ Y     V +A KVF+++   +V +W S++  Y    Q+D+  ++F+ MP
Sbjct: 84  HVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMP 143

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           LK                       ++ S+  M +G      T  AR  F  M  KDIV+
Sbjct: 144 LK-----------------------DLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVS 180

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN+MI+AY+   +M +A +LF  MP +N+ TWN M+  + +N      + L + M  +  
Sbjct: 181 WNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNC 240

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +P+  T T +L++C     + +    H  AI  G      +T      Y          +
Sbjct: 241 LPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCG-----SI 295

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
                 F + + KD+  W A+I   + HGHG+    +F +M K+ T+PD+ITF+G+LS C
Sbjct: 296 QQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSAC 355

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERD 411
           SH+GLV++G + F  M + +G  P+ EHY C+ D+L RA  +  A++++  MP  P E  
Sbjct: 356 SHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGE-- 413

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPS-----SSGAYVLSANVHAARGEWDEFA 466
             +LGALL AC +H D+     +GER+++L  S     S G  ++ +N++A+ G+W+E  
Sbjct: 414 -AILGALLSACIVHQDLE----VGERVVKLVSSRGNYLSDGELMMFSNLYASCGQWEEAN 468

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           + R+ M +  + K A FS +EV GK H  LA
Sbjct: 469 KWREMMNDTGIVKTAGFSVVEVNGKFHKFLA 499



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 125/259 (48%), Gaps = 22/259 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           V +A K+F++M   D V+  S++  +     +  A  +F +MP   +++ + + MI GY 
Sbjct: 101 VADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMP--LKDLSSFNIMISGYS 158

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
             G+   AR +FD + E ++ SW S+IS Y +   ++    LF  MP   KN+++W T+V
Sbjct: 159 SIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMP--AKNIITWNTMV 216

Query: 130 LGCAHNGLIAKL--------------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            G   N L A++              + ++ T + +    +   K   E  +   +  + 
Sbjct: 217 KGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLA 276

Query: 176 A----WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +      A+I  Y   G++ Q  ++F     ++++ WNA+I   A +G   AA+ + N M
Sbjct: 277 SSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKM 336

Query: 232 FQSRFMPNETTCTSILTSC 250
            ++   P++ T   +L++C
Sbjct: 337 RKNHTRPDDITFIGLLSAC 355


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/481 (33%), Positives = 235/481 (48%), Gaps = 68/481 (14%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +I   +++ID Y + G   +D A  +F  + E +V +W S+I G  +  ++    +LFD 
Sbjct: 154 DIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDE 213

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP +                       +++SW TM  G  +      A E F +MP ++I
Sbjct: 214 MPDR-----------------------DMVSWNTMLDGYAKAGEMDTAFELFERMPWRNI 250

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V+W+ M+  Y   G+M  A  LF+  P +NV  W  +I  YA  G    A +L   M ++
Sbjct: 251 VSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEA 310

Query: 235 RFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGF-------EQETSLTYKCTCHYVF 284
              P++    SIL +C   GML      HA   R  F            +  KC C    
Sbjct: 311 GMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGC---- 366

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D  F  DV S  +A      KDVVSW +MI  ++ HGHG +   LF+ M++ G +PD  
Sbjct: 367 LDAAF--DVFSGMMA-----KKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTY 419

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVG+L  C+HAGLV +GRK F  M + YG  P+ EHY C+ D+L R G +KEA  ++  
Sbjct: 420 TFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRS 479

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M P E + ++LG LL ACR+H DV +A  + E+L +L+PS  G Y L +N++A  G+W  
Sbjct: 480 M-PMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMN 538

Query: 465 FAQVRKKM----------------ERRVKKVASFSQIEVKGKD-----HTLLAPMREMGY 503
            A VR +M                E  V +   F Q   K  D       L+  +R++GY
Sbjct: 539 VANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGY 598

Query: 504 V 504
           V
Sbjct: 599 V 599



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 31/261 (11%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A  LF  M + D V+  SMI   +R  +L  A  LF  MP+  R++V+ + M+DGY KAG
Sbjct: 176 AMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPD--RDMVSWNTMLDGYAKAG 233

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            +D A ++F+ +   N+ SW++++ GY K   +D  R LFDR P  +KNVV WTT++ G 
Sbjct: 234 EMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCP--VKNVVLWTTIIAGY 291

Query: 133 AHNG-------LIAKLE----------VISWTTMCT-----GLERNAMTKLAREYFVQMP 170
           A  G       L  K+E          ++S    C      GL +     + R  F    
Sbjct: 292 AEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRF---- 347

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                  NA I  Y   G +  A ++F+ +M +++V +WN+MI  +A +G    A++L +
Sbjct: 348 RCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFS 407

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M Q  F P+  T   +L +C
Sbjct: 408 WMVQEGFEPDTYTFVGLLCAC 428


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/552 (28%), Positives = 274/552 (49%), Gaps = 80/552 (14%)

Query: 8   GKVKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           G+  EA  L+ E      DPV+   +++ +LR     +A  +F  M  + + +V+ S+M+
Sbjct: 158 GRFDEAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGM--AVKEVVSYSSMV 215

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
           DGY K GR+ +AR +FD + E NV +WT++I GYFKA   ++G  LF RM  +    V+ 
Sbjct: 216 DGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNS 275

Query: 126 TTVVL-------------GCAHNGLIAKLEV----------------------------- 143
            T+ +             G   +GL++++ +                             
Sbjct: 276 NTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGV 335

Query: 144 ------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
                 +SW ++ TGL +      A E F +MP KD+V+W  MI  +   G +++  ELF
Sbjct: 336 MKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELF 395

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT---SCEGML 254
            +MP+++  TW AMI  +  NG    A+   + M + +  PN  T +S+L+   S   ++
Sbjct: 396 GMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLI 455

Query: 255 ENMLAHALAIRLGFEQETSL-----TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           E +  H   +++    + S+     +  C C           + N A   F  +   ++V
Sbjct: 456 EGLQIHGRVVKMNMANDLSVQNSLVSMYCKCG----------NTNDAYKIFSCISEPNIV 505

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           S+  MI  +S +G G +  +LF+ +  +G +P+ +TF+ +LS C H G V+ G K F  M
Sbjct: 506 SYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSM 565

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGD 427
             +YG +P  +HY+C+ D+  R+G + EA  ++S MP  PH     V G+LL A + H  
Sbjct: 566 KFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSG---VWGSLLSASKTHLR 622

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARG---EWDEFAQVRKKMERRVKKVASFSQ 484
           V +A+   ++LIEL+P S+  YV+ + +++  G   + D    ++K   +R+KK    S 
Sbjct: 623 VDLAELAAKKLIELEPDSATPYVVLSQLYSMVGKNSDCDRIMNIKK--SKRIKKDPGSSW 680

Query: 485 IEVKGKDHTLLA 496
           I +KG+ H  LA
Sbjct: 681 IILKGQVHNFLA 692



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 179/412 (43%), Gaps = 59/412 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C S I+   RN +L +AEA+FR M  S R+IV+ +AMI  Y + G++ +A +VFDE+   
Sbjct: 53  CNSQISKLARNGNLQEAEAIFRQM--SHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVR 110

Query: 88  NVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
              S+ ++I+   K +  + +   LF  +P K  N VS+ T++ G    G   + E +  
Sbjct: 111 ATTSYNAMITAMIKNKCDLGKAYELFCDIPEK--NAVSYATMITGFVRAGRFDEAECLYA 168

Query: 147 TT------------MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
            T            + +G  R      A   F  M  K++V++++M+  Y   G +  A 
Sbjct: 169 ETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDAR 228

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
            LF+ MP+RNV TW AMID Y + G   +G  +  L +  +     N  T   +  +C  
Sbjct: 229 SLFDRMPERNVITWTAMIDGYFKAGFFEDGFGL-FLRMRQEGDVRVNSNTLAVMFRACRD 287

Query: 253 ML---ENMLAHALAIRLGFEQE-----------TSLTYKCTCHYVFW--------DWGFQ 290
                E    H L  R+  E +           + L Y      VF          W   
Sbjct: 288 FFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSL 347

Query: 291 L-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +        ++ A   FE++  KD+VSWT MI  +S  G   +   LF  M     + D+
Sbjct: 348 ITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM----PEKDD 403

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSR------AYGFKPRAEHYSCLADIL 389
           IT+  ++S     G  E+    F+ M R      +Y F       + LAD++
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLI 455



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + EA  +F  M   D VS  S+IT  ++   + +A  LF  MP   +++V+ 
Sbjct: 318 SMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMP--GKDMVSW 375

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + MI G+   G + +  ++F  + E +  +WT++IS +      +E    F +M  K   
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVC 435

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++++V+   A           S   +  GL+ +      R   + M N D+   N+
Sbjct: 436 PNSYTFSSVLSATA-----------SLADLIEGLQIH-----GRVVKMNMAN-DLSVQNS 478

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y   GN   A ++F+ + + N+ ++N MI  ++ NG    A+KL +++  +   PN
Sbjct: 479 LVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPN 538

Query: 240 ETTCTSILTSC 250
             T  ++L++C
Sbjct: 539 GVTFLALLSAC 549


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 226/443 (51%), Gaps = 48/443 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K   + +A+KVFDE+   +V SW + ++   +  +VD  R +FD MP K   
Sbjct: 243 NALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEK--- 299

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               + +SW TM  G  +    + A E F +MP +++V+W+ ++
Sbjct: 300 --------------------DTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVV 339

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           +AY   G+M  A  +F+ MP +N+ TW  M+   A+ G  G A +L   M ++    +  
Sbjct: 340 SAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVV 399

Query: 242 TCTSILTSC--EGML---ENMLAHALAIRLGFEQET-----SLTYKCTCHYVFWDWGFQL 291
              SIL +C   G L   + +  H    +LG           +  KC C           
Sbjct: 400 AVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGC----------- 448

Query: 292 DVNSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            VN A   F+  +  KD VSW  +I  ++ HGHG +   LF +M + G  PD +T + VL
Sbjct: 449 -VNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVL 507

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+H GLVE+GR+ F  M   YG KP  EHY C+ D+L R G +KEA+ ++  M P E 
Sbjct: 508 SACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSM-PWEP 566

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           + V+ G+LL ACRLH +V  A+     L  LQPS++G Y + +N++A  G+W + A+ R 
Sbjct: 567 NEVIWGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARV 626

Query: 471 KME-RRVKKVASFSQIEVKGKDH 492
           +M+    +K A  S IE+    H
Sbjct: 627 QMKGTGSQKTAGSSWIELDEAFH 649



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 136/263 (51%), Gaps = 23/263 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +A K+FDEM+  D VS  + +   +R  ++  A ++F  MPE  ++ V+ + M+DGY 
Sbjct: 255 LSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPE--KDTVSWNTMLDGYA 312

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           KAG  +EA ++F  +   NV SW++++S Y K   ++  R +FD+MP   KN+V+WT +V
Sbjct: 313 KAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMP--AKNLVTWTIMV 370

Query: 130 LGCAHNGLIA--------------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI- 174
             CA  GL+               +L+V++  ++      +    L +     +  + + 
Sbjct: 371 SACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLG 430

Query: 175 ---VAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
              +  NA++  +   G + +A  +F+  + +++  +WN +I  +A +G    A+ L   
Sbjct: 431 RSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQ 490

Query: 231 MFQSRFMPNETTCTSILTSCEGM 253
           M Q  F P+  T  ++L++C  M
Sbjct: 491 MKQQGFHPDAVTLINVLSACTHM 513


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 233/453 (51%), Gaps = 45/453 (9%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  LF  +P+   NI   ++M  GY ++   +  R++F E++E NV +WTS+I+GY  + 
Sbjct: 4   ARQLFDQIPDP--NIALWNSMFRGYAQS---ESYREIFCEMFERNVVAWTSMINGYILSA 58

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
            +   RRLFD  P +                       +V+ W  M +G         AR
Sbjct: 59  DLVSARRLFDLAPER-----------------------DVVLWNIMVSGYIEGGDMVEAR 95

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + F +MPN+D++ WN ++  Y   GN+     LF  MP+RN+++WNA+I  YA NG    
Sbjct: 96  KLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 155

Query: 224 AMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYK 277
            +     M  +S   PN+ T  ++L++C        A   A+ LG     + + + L   
Sbjct: 156 VLGSFKRMLSESDVPPNDATLVTVLSAC--------ARLGALDLGKWVHVYAESSGLKGN 207

Query: 278 CTCHYVFWDWGFQLDV-NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                   D   +  +  +A   F  ++ KD++SW  +I   + H  G     LF +M  
Sbjct: 208 VYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKN 267

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G KPD ITF+G+L  C+H GLVE G   F  M+  Y   P+ EHY C+ D+L RAG+++
Sbjct: 268 AGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLE 327

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           +AM  V KMP  E D V+   LLGACR++ +V +A+   +RLIEL+P +   YV+ +N++
Sbjct: 328 QAMAFVRKMPV-EADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIY 386

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
              G W++ A+++  M +   KK+   S IEV 
Sbjct: 387 GDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVN 419



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 102/255 (40%), Gaps = 49/255 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + EA KLF EM   D +   +++  +  N ++   E LF  MPE  RNI + +A+I G
Sbjct: 89  GDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPE--RNIFSWNALIGG 146

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G   E                   + G FK R + E     D  P    N  +  T
Sbjct: 147 YAHNGLFFE-------------------VLGSFK-RMLSES----DVPP----NDATLVT 178

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
           V+  CA  G +   + +      +GL+ N                 +   NA++  Y   
Sbjct: 179 VLSACARLGALDLGKWVHVYAESSGLKGN-----------------VYVGNALMDMYAKC 221

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G +  A  +F  M  +++ +WN +I   A +     A+ L   M  +   P+  T   IL
Sbjct: 222 GIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGIL 281

Query: 248 TSCE--GMLENMLAH 260
            +C   G++E+  A+
Sbjct: 282 CACTHMGLVEDGFAY 296


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 256/512 (50%), Gaps = 33/512 (6%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMID 66
           ++KEA      + QP P   +++I   LR+  L   + +      S     IV  + +I 
Sbjct: 47  RLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIH 106

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            Y K G + +A+ +FDEI + ++ SW ++ISGY    ++++ R+LFD MP +  +  SW 
Sbjct: 107 MYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR--DNFSWN 164

Query: 127 TVVLGCAHNG-LIAKLEVISWTTMCTGLERNAMT-----------------KLAREYFVQ 168
            V+ G    G  +  L++            N  T                 K    Y ++
Sbjct: 165 AVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIR 224

Query: 169 MPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
              + D V W A++  Y   G++ +A  +F+ M  +++ +W  MI R   +G +     L
Sbjct: 225 SGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSL 284

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVF 284
              +  S   PNE T   +L +C  +    +    H    R+G++   S       H V+
Sbjct: 285 FRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYD-PFSFAASALVH-VY 342

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
              G   +  +AR  F ++   D+VSWT++I+ Y+ +G      + F  +L+SGTKPDEI
Sbjct: 343 SKCG---NTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEI 399

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVGVLS C+HAGLV+ G + F+ +   +G    A+HY+C+ D+L R+G+ KEA  ++  
Sbjct: 400 TFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDN 459

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M P + D  +  +LLG CR+HG++ +A+   + L EL+P +   Y+  +N++A  G W E
Sbjct: 460 M-PMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTE 518

Query: 465 FAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
             +VR  M+ R + K    S IE+K + H  L
Sbjct: 519 ETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFL 550



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 178/456 (39%), Gaps = 99/456 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A  LFDE+ Q D  S  +MI+ +     + +A  LF  MP   R+  + +A+I G
Sbjct: 112 GSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMP--HRDNFSWNAVISG 169

Query: 68  YVKAGRVDEARKVFDEIYEG-----NVYS------------------------------- 91
           YV  G   EA  +F  + E      N+++                               
Sbjct: 170 YVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLEL 229

Query: 92  ----WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------- 136
               WT+L+  Y K   ++E R +FD+M    K++VSWTT++  C  +G           
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMA--DKDIVSWTTMIHRCFEDGRKKEGFSLFRD 287

Query: 137 -LIAKLEVISWT-----TMCTGLERNAMTKLAREYFVQMPNKDI-VAWNAMITAYVDAGN 189
            + + +    +T       C  L    M K    Y  ++       A +A++  Y   GN
Sbjct: 288 LMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGN 347

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
              A  +FN MP+ ++ +W ++I  YA+NG    A++    + +S   P+E T   +L++
Sbjct: 348 TETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSA 407

Query: 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           C         HA  + +G E   S+  K    +    +   +D+ +    F+  EA++++
Sbjct: 408 C--------THAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK--EAENII 457

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
               M                         KPD+  +  +L  C   G +E   +    +
Sbjct: 458 DNMPM-------------------------KPDKFLWASLLGGCRIHGNIELAERAAKAL 492

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
                  P    Y  L++I   AG   E  +V + M
Sbjct: 493 FELEPENPAT--YITLSNIYANAGLWTEETKVRNDM 526


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 175/615 (28%), Positives = 276/615 (44%), Gaps = 144/615 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----------- 55
           TG +  A ++FD+MSQ D +S  ++I+ ++  +D  +A  LF+ M               
Sbjct: 62  TGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSL 121

Query: 56  ---------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       ++   SA++D Y K G++ E R+VF E+   N
Sbjct: 122 AHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRN 181

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLI-------- 138
           V SWT++I+G  +A    E    F  M        S+T  +    CA +G +        
Sbjct: 182 VVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHA 241

Query: 139 ------------------------AKLE-------------VISWTTMCTGLERNAMTKL 161
                                    KLE             V+SWTT+ T L +    + 
Sbjct: 242 QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEEC 301

Query: 162 AREYFVQMPNKDI-------------------VAW--------------------NAMIT 182
           A + F++M   D+                   + W                    N+++T
Sbjct: 302 AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMT 361

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  +S +F+ M +R++ +W+ +I  Y + G    A +LL+ M      P E  
Sbjct: 362 MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFA 421

Query: 243 CTSILTSCEGM--LEN-MLAHALAIRLGFEQ-----ETSLTYKCTCHYVFWDWGFQLDVN 294
             S+L++C  M  LE+    HA  + +G E         +   C C            + 
Sbjct: 422 LASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCG----------SIE 471

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F+  E  D+VSWTAMI  Y+ HG+  +V  LF ++ + G +PD +TF+GVLS CS
Sbjct: 472 EASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV+ G   FN MS+ Y   P  EHY C+ D+L RAG++ +A  ++  MP H RD VV
Sbjct: 532 HAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFH-RDDVV 590

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
              LL ACR+HGDV       ER+++L+P+ +G ++  AN++A++G+W E A +RK M+ 
Sbjct: 591 WSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKS 650

Query: 475 R-VKKVASFSQIEVK 488
           + V K   +S I+VK
Sbjct: 651 KGVIKEPGWSWIKVK 665



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 28/322 (8%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           SQ ++   +  +   VK G +  AR++FD++ + +  SWT+LISGY  A    E   LF 
Sbjct: 45  SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFK 104

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            M  ++++ +     +L  AH       +V ++  +  G      T L    FV      
Sbjct: 105 NM--RVESGLRIDPFILSLAHKACGLNSDV-NYGELLHGYA--VKTGLVNSVFVG----- 154

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               +A++  Y   G + +   +F+ MP RNV +W A+I    R G    A+   + M++
Sbjct: 155 ----SALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 234 SRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYV---FWDW 287
           SR   +  T    L +C   G L      HA A++ GF+  + +       Y      ++
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEY 270

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G  L        FE++  +DVVSWT +I      G      + F RM +S   P+E TF 
Sbjct: 271 GLTL--------FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFA 322

Query: 348 GVLSDCSHAGLVEKGRKTFNLM 369
            V+S C++   +E G +   L+
Sbjct: 323 AVISGCANLARIEWGEQLHALI 344


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/437 (31%), Positives = 235/437 (53%), Gaps = 34/437 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A++D YVK G +  ARKVFDE+   +  SWT++I GY +   + E RRLFD M 
Sbjct: 159 DLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME 218

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       +++++  M  G  +     LARE F +M  +++V+
Sbjct: 219 DR-----------------------DIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVS 255

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W +M++ Y   G++  A  +F+LMP++NV+TWNAMI  Y +N     A++L   M  +  
Sbjct: 256 WTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASV 315

Query: 237 MPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            PNE T   +L +    G L+     H  A+R   ++   +       Y         ++
Sbjct: 316 EPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCG-----EI 370

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A+LAFE +  ++  SW A+I  ++ +G   +   +FARM++ G  P+E+T +GVLS C
Sbjct: 371 TKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSAC 430

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H GLVE+GR+ FN M R +G  P+ EHY C+ D+L RAG + EA  ++  M P++ + +
Sbjct: 431 NHCGLVEEGRRWFNAMER-FGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTM-PYDANGI 488

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           +L + L AC    DV  A+ + + ++++    +G YV+  N++A R  W +   V++ M+
Sbjct: 489 ILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMK 548

Query: 474 RR-VKKVASFSQIEVKG 489
           +R   K  + S IE+ G
Sbjct: 549 KRGTSKEVACSVIEIGG 565



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 137/268 (51%), Gaps = 24/268 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+FDEMS    VS  ++I  + R  D+ +A  LF  M +  R+IVA +AMIDG
Sbjct: 174 GVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMED--RDIVAFNAMIDG 231

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YVK G V  AR++F+E+ E NV SWTS++SGY     V+  + +FD MP   KNV +W  
Sbjct: 232 YVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMP--EKNVFTWNA 289

Query: 128 VVLG-C----AHNGL-------IAKLEVISWTTMCT--GLERNAMTKLAR--EYFVQMPN 171
           ++ G C    +H+ L        A +E    T +C    +       L R    F     
Sbjct: 290 MIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKK 349

Query: 172 KDIVA--WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            D  A    A+I  Y   G + +A   F  M +R   +WNA+I+ +A NG    A+++  
Sbjct: 350 LDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFA 409

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE 255
            M +  F PNE T   +L++C   G++E
Sbjct: 410 RMIEEGFGPNEVTMIGVLSACNHCGLVE 437



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 42/277 (15%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           + GC G  +E   LF+EM + + VS  SM++ +  N D+  A+ +F  MPE  +N+   +
Sbjct: 234 KMGCVGLARE---LFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPE--KNVFTWN 288

Query: 63  AMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           AMI GY +  R  +A ++F E+     E N  +   ++        +D GR +  R  L+
Sbjct: 289 AMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWI-HRFALR 347

Query: 119 LK---NVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREY 165
            K   +    T ++   A  G I K           E  SW  +  G   N   K A E 
Sbjct: 348 KKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEV 407

Query: 166 FVQM------PNKDIVAWNAMITAYVDAGNMAQASELFNLM------PQRNVWTWNAMID 213
           F +M      PN+  V    +++A    G + +    FN M      PQ  V  +  M+D
Sbjct: 408 FARMIEEGFGPNE--VTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQ--VEHYGCMVD 463

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              R G    A  L+  M    +  N    +S L +C
Sbjct: 464 LLGRAGCLDEAENLIQTM---PYDANGIILSSFLFAC 497


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/537 (30%), Positives = 272/537 (50%), Gaps = 63/537 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------PESQRN 57
           ++ A KLFD++ QP+      +I  +  + D  K+  L+R M            P   + 
Sbjct: 84  LRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKA 143

Query: 58  IVAES-------------------------AMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
             A+S                         A+++ YV  G +  AR+VFD+I E  + SW
Sbjct: 144 CAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSW 203

Query: 93  TSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            S+I+GY K  + +E   +F  M  + L+ +V +   ++     +G       +    + 
Sbjct: 204 NSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVV 263

Query: 151 TGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
           TG+E +++               K A+  F QM +KD+V+W  MI AY + G +  A E 
Sbjct: 264 TGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEF 323

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           FN MP +NV +WN++I  + + G    A+ L   M  S  M N+TT  +IL+SC  M + 
Sbjct: 324 FNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDL 383

Query: 257 ML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            L   AH+      F+   +L+    C+ +   +     + +A   F  +  K+ VSW  
Sbjct: 384 ALGKQAHSYI----FDNNITLSAT-LCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNV 438

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I A + HG+G +   +F +M  SG  PDEITF G+LS CSH+GLV+ G+  F +M+  +
Sbjct: 439 IIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTF 498

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G  P  EHY+C+ D+L R G + EA+ ++ KMP  + D VV  ALLGACR +G++ +   
Sbjct: 499 GISPDVEHYACMVDLLGRRGLLGEAISLIKKMPV-KPDVVVWSALLGACRTYGNLAIGKQ 557

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           I ++L+EL   +SG YVL +N+++    WD+   + K +++  +KK  + S IE+ G
Sbjct: 558 IMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEIDG 614



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 161/353 (45%), Gaps = 37/353 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLR--NHDLPKAEALFRAMPESQRNIVAE 61
           G+ +EA  +F EM +    PD  +   +++V  +  N DL +   L   +   + + +  
Sbjct: 214 GRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVT 273

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D Y K G +  A+ VFD++ + +V SWT +I+ Y     +D     F++MP   KN
Sbjct: 274 NALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMP--GKN 331

Query: 122 VVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLARE 164
           VVSW +++      GL A+                   +++  + C+ +   A+ K A  
Sbjct: 332 VVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHS 391

Query: 165 Y-FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y F           NA+I  Y   G +  A ++F  MP++N  +WN +I   A +G    
Sbjct: 392 YIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKE 451

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A+++   M  S   P+E T T +L++C   G+++    +   + L F     +  Y C  
Sbjct: 452 AIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMV 511

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILA---YSNHGHGFQVFR 329
             +    G +  +  A    +++  K DVV W+A++ A   Y N   G Q+ +
Sbjct: 512 DLL----GRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMK 560



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 11/261 (4%)

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           ++    ++++ V   ++  A +LF+ +PQ N + +N +I  Y+ +     ++ L   M  
Sbjct: 68  VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVC 127

Query: 234 SRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
              +PN+ T   +L +C         +  HA + +LG      +       YV       
Sbjct: 128 DGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGL--- 184

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             + SAR  F+ +  + +VSW +MI  YS  G   +   +F  M + G +PD  T VG+L
Sbjct: 185 --ITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLL 242

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S  +  G  + GR   +L     G +  +   + L D+  + G +K A  V  +M   ++
Sbjct: 243 SVSTKHGNFDLGRFV-HLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQML--DK 299

Query: 411 DHVVLGALLGACRLHGDVRMA 431
           D V    ++ A   HG +  A
Sbjct: 300 DVVSWTCMINAYANHGLIDCA 320


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 164/517 (31%), Positives = 277/517 (53%), Gaps = 44/517 (8%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           PV+  S++ ++ +  D   A+ +F  M  + +NI   +A+I  Y+++G+ + A   F+++
Sbjct: 178 PVA-TSLLNMYAKCGDPVIAKVVFDRM--TVKNISTWNALISLYMQSGQFELAASQFEKM 234

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKL 141
            + ++ SW S+ISGY +     E   +F +M   P    +  +  +++  CA+   + KL
Sbjct: 235 PDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACAN---LEKL 291

Query: 142 EV--------ISWTTMCTGLERNAMTKL-AREYFVQM----------PNKDIVAWNAMIT 182
            +        +   T  +G   NA+  + A+   V++           N +I+A+ +++ 
Sbjct: 292 NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLD 351

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   GN+  A E+FN +  R+V  W AMI  Y +NG    A++L  LM      PN  T
Sbjct: 352 GYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYT 411

Query: 243 CTSILT--SCEGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             ++L+  S   +LE+    HA AI+ G     S+T      Y         ++N A+  
Sbjct: 412 LAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTG-----NINVAKRV 466

Query: 300 FERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           F+    K ++VSWT+MI+A + HG G +   LF RML  G KPD IT+VGVLS C+H GL
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGL 526

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           VE+GRK +N+M+  +  +P   HY+C+ D+  RAG ++EA   +  MP  E D++  G+L
Sbjct: 527 VEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI-EPDNIAWGSL 585

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVK 477
           L +C++H +  +A    ERL+ + P +SGAY+  ANV++A G+W+  AQ RK M +R V+
Sbjct: 586 LASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVR 645

Query: 478 KVASFSQIEVKGKDHT-----LLAPMREMGYVVLKEV 509
           K    S I +K + H      ++ P ++  Y ++ E+
Sbjct: 646 KEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEI 682



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 212/484 (43%), Gaps = 57/484 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + +   L  A  +F  MP   ++  + + +I GY K G  + +R++  E+ + + 
Sbjct: 50  NLMTFYAKTGSLRFAHHVFDEMP--LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDP 107

Query: 90  YSWTSLISGYFKARQVDEGRRLF-----DRMP---LKLKNVVSW----TTVVLGCAHNGL 137
            SWT++I GY +    D    +F     +R+P     + NV+S      T+ +G   +  
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSF 167

Query: 138 IAKLEVISWTTMCTGLERNAMTK-----LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           + KL + S   + T L  N   K     +A+  F +M  K+I  WNA+I+ Y+ +G    
Sbjct: 168 VVKLGLGSCVPVATSL-LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSC- 250
           A+  F  MP R++ +WN+MI  Y++ G    A+ + + M  +    P+  T  SIL++C 
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 251 ----------------------EGMLENMLAHALA-------IRLGFEQETSLTYKCTCH 281
                                  G + N L    A        RL  E   +        
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 282 YVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
               D   +L +V  AR  F +L  +DVV+WTAMI+ Y  +G       LF  M+  G +
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+  T   +LS  S   ++E G++      +A G        + L  +  + G +  A R
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQIHASAIKA-GESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHA 457
           V   +P  +++ V   +++ A   HG  + A  + ER++   ++P   +   VLSA  H 
Sbjct: 466 VFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV 524

Query: 458 ARGE 461
              E
Sbjct: 525 GLVE 528



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 138/332 (41%), Gaps = 39/332 (11%)

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
           L V     + T   +    + A   F +MP K   +WN +I+ Y   GN   +  L   M
Sbjct: 43  LGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEM 102

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENM 257
           P  +  +W A+I  Y + G    A+ +   M   R  P++ T +++L+SC   + +    
Sbjct: 103 PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 258 LAHALAIRLGFEQ----ETSLT---YKC----TCHYVF----------WDWGFQLDVNSA 296
             H+  ++LG        TSL     KC        VF          W+    L + S 
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 297 RL-----AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVL 350
           +       FE++  +D+VSW +MI  YS  G+  +   +F++ML   + KPD  T   +L
Sbjct: 223 QFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASIL 282

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMP 406
           S C++   +  G++       AY  +   E    + + L     ++G V+ A  +V    
Sbjct: 283 SACANLEKLNIGKQI-----HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNR 337

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               + +   +LL      G+V+ A  I  +L
Sbjct: 338 TSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 164/517 (31%), Positives = 277/517 (53%), Gaps = 44/517 (8%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           PV+  S++ ++ +  D   A+ +F  M  + +NI   +A+I  Y+++G+ + A   F+++
Sbjct: 178 PVA-TSLLNMYAKCGDPVIAKVVFDRM--TVKNISTWNALISLYMQSGQFELAASQFEKM 234

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKL 141
            + ++ SW S+ISGY +     E   +F +M   P    +  +  +++  CA+   + KL
Sbjct: 235 PDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACAN---LEKL 291

Query: 142 EV--------ISWTTMCTGLERNAMTKL-AREYFVQM----------PNKDIVAWNAMIT 182
            +        +   T  +G   NA+  + A+   V++           N +I+A+ +++ 
Sbjct: 292 NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLD 351

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   GN+  A E+FN +  R+V  W AMI  Y +NG    A++L  LM      PN  T
Sbjct: 352 GYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYT 411

Query: 243 CTSILT--SCEGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             ++L+  S   +LE+    HA AI+ G     S+T      Y         ++N A+  
Sbjct: 412 LAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTG-----NINVAKRV 466

Query: 300 FERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           F+    K ++VSWT+MI+A + HG G +   LF RML  G KPD IT+VGVLS C+H GL
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGL 526

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           VE+GRK +N+M+  +  +P   HY+C+ D+  RAG ++EA   +  MP  E D++  G+L
Sbjct: 527 VEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPI-EPDNIAWGSL 585

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVK 477
           L +C++H +  +A    ERL+ + P +SGAY+  ANV++A G+W+  AQ RK M +R V+
Sbjct: 586 LASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVR 645

Query: 478 KVASFSQIEVKGKDHT-----LLAPMREMGYVVLKEV 509
           K    S I +K + H      ++ P ++  Y ++ E+
Sbjct: 646 KEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEI 682



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 212/484 (43%), Gaps = 57/484 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + +   L  A  +F  MP   ++  + + +I GY K G  + +R++  E+ + + 
Sbjct: 50  NLMTFYAKTGSLRFAHHVFDEMP--LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDP 107

Query: 90  YSWTSLISGYFKARQVDEGRRLF-----DRMP---LKLKNVVSW----TTVVLGCAHNGL 137
            SWT++I GY +    D    +F     +R+P     + NV+S      T+ +G   +  
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSF 167

Query: 138 IAKLEVISWTTMCTGLERNAMTK-----LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           + KL + S   + T L  N   K     +A+  F +M  K+I  WNA+I+ Y+ +G    
Sbjct: 168 VVKLGLGSCVPVATSL-LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSC- 250
           A+  F  MP R++ +WN+MI  Y++ G    A+ + + M  +    P+  T  SIL++C 
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 251 ----------------------EGMLENMLAHALA-------IRLGFEQETSLTYKCTCH 281
                                  G + N L    A        RL  E   +        
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 282 YVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
               D   +L +V  AR  F +L  +DVV+WTAMI+ Y  +G       LF  M+  G +
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+  T   +LS  S   ++E G++      +A G        + L  +  + G +  A R
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQIHASAIKA-GESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHA 457
           V   +P  +++ V   +++ A   HG  + A  + ER++   ++P   +   VLSA  H 
Sbjct: 466 VFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV 524

Query: 458 ARGE 461
              E
Sbjct: 525 GLVE 528



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 138/332 (41%), Gaps = 39/332 (11%)

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
           L V     + T   +    + A   F +MP K   +WN +I+ Y   GN   +  L   M
Sbjct: 43  LGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEM 102

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENM 257
           P  +  +W A+I  Y + G    A+ +   M   R  P++ T +++L+SC   + +    
Sbjct: 103 PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 258 LAHALAIRLGFEQ----ETSLT---YKC----TCHYVF----------WDWGFQLDVNSA 296
             H+  ++LG        TSL     KC        VF          W+    L + S 
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 297 RL-----AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVL 350
           +       FE++  +D+VSW +MI  YS  G+  +   +F++ML   + KPD  T   +L
Sbjct: 223 QFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASIL 282

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMP 406
           S C++   +  G++       AY  +   E    + + L     ++G V+ A  +V    
Sbjct: 283 SACANLEKLNIGKQI-----HAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNR 337

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               + +   +LL      G+V+ A  I  +L
Sbjct: 338 TSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 274/577 (47%), Gaps = 107/577 (18%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE---------- 61
           +A +LF ++ + + VS A+MIT F+R     +AE L+   P   R+ VA           
Sbjct: 131 KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRA 190

Query: 62  ---------------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
                                S+M+ GY K GR+ +AR +FD + E NV +WT++I GYF
Sbjct: 191 GKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVL-------------GCAHNGLIAKL------ 141
           KA   ++G  LF RM  +    V+  T+ +             G   +GL++++      
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDL 310

Query: 142 -----------------------------EVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
                                        + +SW ++ TGL +      A E F +MP K
Sbjct: 311 FLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK 370

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W  MI  +   G +++  ELF +MP+++  TW AMI  +  NG    A+   + M 
Sbjct: 371 DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKML 430

Query: 233 QSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSL-----TYKCTCHYVF 284
           Q    PN  T +S+L+   S   ++E +  H   +++    + S+     +  C C    
Sbjct: 431 QKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCG--- 487

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  + N A   F  +   ++VS+  MI  YS +G G +  +LF+ +  SG +P+ +
Sbjct: 488 -------NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGV 540

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF+ +LS C H G V+ G K F  M  +Y  +P  +HY+C+ D+L R+G + +A  ++S 
Sbjct: 541 TFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIST 600

Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-- 460
           MP  PH     V G+LL A + H  V +A+   ++LIEL+P S+  YV+ + +++  G  
Sbjct: 601 MPCKPHSG---VWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKN 657

Query: 461 -EWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
            + D    ++K   +R+KK    S I +KG+ H  LA
Sbjct: 658 RDCDRIMNIKK--SKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 175/412 (42%), Gaps = 59/412 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C S I+   RN +L +AEA+FR M  S R+IV+  AMI  Y + G++ +A +VFDE+   
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQM--SNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVR 110

Query: 88  NVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV--- 143
              S+ ++I+   K +  + +   LF  +P K  N VS+ T++ G    G   + E    
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEK--NAVSYATMITGFVRAGRFDEAEFLYA 168

Query: 144 ---------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                    ++   + +G  R      A   F  M  K++V+ ++M+  Y   G +  A 
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
            LF+ M +RNV TW AMID Y + G   +G  +  L +  +     N  T   +  +C  
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL-FLRMRQEGDVKVNSNTLAVMFKACRD 287

Query: 253 ML---ENMLAHALAIRLGFEQE-----------TSLTYKCTCHYVFW--------DWGFQ 290
            +   E    H L  R+  E +           + L Y      VF          W   
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSL 347

Query: 291 L-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +        ++ A   FE++  KD+VSWT MI  +S  G   +   LF  M     + D 
Sbjct: 348 ITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM----PEKDN 403

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLM------SRAYGFKPRAEHYSCLADIL 389
           IT+  ++S     G  E+    F+ M        +Y F       + LAD++
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLI 455



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + EA  +F  M   D VS  S+IT  ++   + +A  LF  MP   +++V+ 
Sbjct: 318 SMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMP--GKDMVSW 375

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + MI G+   G + +  ++F  + E +  +WT++IS +      +E    F +M  K   
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++++V+   A           S   +  GL+ +   ++ +   V     D+   N+
Sbjct: 436 PNSYTFSSVLSATA-----------SLADLIEGLQIHG--RVVKMNIVN----DLSVQNS 478

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y   GN   A ++F+ + + N+ ++N MI  Y+ NG    A+KL +++  S   PN
Sbjct: 479 LVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPN 538

Query: 240 ETTCTSILTSC 250
             T  ++L++C
Sbjct: 539 GVTFLALLSAC 549


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 234/449 (52%), Gaps = 48/449 (10%)

Query: 57  NIVAESAMIDGYVKAGR--VDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           ++   +++ID Y K G   +  A+K+F  +    +V SW S+ISG  K    +E R++FD
Sbjct: 152 DVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFD 211

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            MP K                       + ISW TM  G  +      A + F +MP ++
Sbjct: 212 EMPEK-----------------------DGISWNTMLDGYVKVGKMDDAFKLFDEMPERN 248

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+W+ M+  Y  AG+M  A  LF+ MP +N+ +W  ++  +A  G    A+ L + M +
Sbjct: 249 VVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEK 308

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL---TYKCTCHY------VF 284
           +    +  T  SIL +C        A +  + LG +   S+    +KCT         ++
Sbjct: 309 ACLKLDNGTVMSILAAC--------AESGLLGLGEKIHASIKNNNFKCTTEISNALVDMY 360

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
              G    +N A   F  ++ KDVVSW AM+   + HGHG +   LF RM + G  P+++
Sbjct: 361 AKCG---RLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKV 417

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T +GVL  C+HAGL++ G + F+ M R Y   P  EHY C+ D+L R G+++EA+R++  
Sbjct: 418 TMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRN 477

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M P   + ++ G LLGACR+H  V +A  + + L+EL+P+ SG + + +N++AA G+W+ 
Sbjct: 478 M-PMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNC 536

Query: 465 FAQVRKKMER-RVKKVASFSQIEVKGKDH 492
            A  R +M     KK +  S IEV  + H
Sbjct: 537 VANTRLRMRSIGTKKPSGASSIEVNNEVH 565



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 57/296 (19%)

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           CT L  N + +L  +      + D+     +I+A+     M  A+  FN +   NV  +N
Sbjct: 30  CTNL--NQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYN 87

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-----MLENMLAHALAI 264
            MI  ++ N     A      M +     +  T   +L  C G     ++E++  HA   
Sbjct: 88  TMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESV--HAQIE 145

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGH 323
           + GF  +  +       Y          +++A+  F  + A +DVVSW +MI        
Sbjct: 146 KFGFMSDVFVPNSLIDSYSKCG---SCGISAAKKLFVSMGARRDVVSWNSMI-------- 194

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                                      S  +  GL E+ RK F+ M    G       ++
Sbjct: 195 ---------------------------SGLAKGGLYEEARKVFDEMPEKDGIS-----WN 222

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL-LGACRLHGDVRMADYIGERL 438
            + D   + G++ +A ++  +MP  ER+ V    + LG C+  GD+ MA  + +++
Sbjct: 223 TMLDGYVKVGKMDDAFKLFDEMP--ERNVVSWSTMVLGYCKA-GDMEMARMLFDKM 275


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 272/533 (51%), Gaps = 69/533 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI---------- 58
           +V  A K+FDEM++ D +S  S+I  ++ N    K  ++F  M  S   I          
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFA 304

Query: 59  -VAESAMI--------------------------DGYVKAGRVDEARKVFDEIYEGNVYS 91
             A+S +I                          D Y K G +D A+ VF E+   +V S
Sbjct: 305 GCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVS 364

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE-VISWTT 148
           +TS+I+GY +     E  +LF+ M  +    +V + T V+  CA N L+ + + V  W  
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEW-- 422

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
               ++ N M              DI   NA++  Y   G+M +A  +F+ M  +++ +W
Sbjct: 423 ----IKENDM------------GFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISW 466

Query: 209 NAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           N +I  Y++N     A+ L NL+  + RF P+E T   +L +C  +    +    H   +
Sbjct: 467 NTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R G+  +  +       Y     G  L    ARL F+ + +KD+VSWT MI  Y  HG G
Sbjct: 527 RNGYFSDRHVANSLVDMYA--KCGALL---LARLLFDDITSKDLVSWTVMIAGYGMHGFG 581

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF +M ++G +PDEI+FV +L  CSH+GLV++G + FN+M      +P  EHY+C
Sbjct: 582 KEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L R G + +A R +  MP    D  + GALL  CR+H DV++A+ + E++ EL+P 
Sbjct: 642 IVDMLARTGNLSKAYRFIENMPIPP-DATIWGALLCGCRIHHDVKLAERVAEKVFELEPE 700

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           ++G YVL AN++A   +W+E  ++RK++ +R ++K    S IE+KG+ +  +A
Sbjct: 701 NTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 189/464 (40%), Gaps = 72/464 (15%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +KEA+++FD++     +    ++    ++ D   +  LF+ M  S             
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    +RN V  S ++  Y+K  RVD ARKVFDE+ E +V
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNSVGNS-LVAFYLKNHRVDSARKVFDEMTERDV 261

Query: 90  YSWTSLISGYFKARQVDEG-----RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            SW S+I+GY      ++G     + LF  + + L  +VS   V  GCA + LI+    +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS---VFAGCADSRLIS----L 314

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                C G++       +RE             N ++  Y   G++  A  +F  M  R+
Sbjct: 315 GRAVHCFGVK----ACFSREDRF---------CNTLLDMYSKCGDLDSAKVVFREMSGRS 361

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V ++ +MI  YAR G  G A+KL   M +    P+  T T++L  C     N L      
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA---RNRLLDEGKR 418

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
              + +E  + +         D   +   +  A L F  +  KD++SW  +I  YS + +
Sbjct: 419 VHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCY 478

Query: 324 GFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
             +   LF  +L +    PDE T   VL  C+     +KGR+    + R   F  R    
Sbjct: 479 ANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           S L D+  + G +  A  +   +    +D V    ++    +HG
Sbjct: 539 S-LVDMYAKCGALLLARLLFDDITS--KDLVSWTVMIAGYGMHG 579



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 26/252 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           G   EA KLF+EM +    PD  +  +++    RN  L + + +   + E+    +I   
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS 435

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++D Y K G + EA  VF E+   ++ SW ++I GY K    +E   LF+ + ++ + 
Sbjct: 436 NALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRF 495

Query: 121 --NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             +  +   V+  CA      K   I    M  G            YF      D    N
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNG------------YF-----SDRHVAN 538

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y   G +  A  LF+ +  +++ +W  MI  Y  +G    A+ L N M Q+   P
Sbjct: 539 SLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEP 598

Query: 239 NETTCTSILTSC 250
           +E +  S+L +C
Sbjct: 599 DEISFVSLLYAC 610



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 145/361 (40%), Gaps = 64/361 (17%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G + EA +VFD++       W  L++   K+        LF +M      + S+T 
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 128 VVLGCAHNGL--IAKLEVISWTTMCTGL-ERNAM-------------TKLAREYFVQMPN 171
             +  + + L  +   E +    + +G  ERN++                AR+ F +M  
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTE 258

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +D+++WN++I  YV                                    G A K L++ 
Sbjct: 259 RDVISWNSIINGYV----------------------------------SNGLAEKGLSVF 284

Query: 232 FQSRFMPNETTCTSILTSCEGMLENML------AHALAIRLGFEQETSLTYKCTCHYVFW 285
            Q  F   E    +I++   G  ++ L       H   ++  F +E        C+ +  
Sbjct: 285 VQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRF-----CNTLLD 339

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
            +    D++SA++ F  +  + VVS+T+MI  Y+  G   +  +LF  M + G  PD  T
Sbjct: 340 MYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 346 FVGVLSDCSHAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
              VL+ C+   L+++G++    +     GF     +   L D+  + G ++EA  V S+
Sbjct: 400 VTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSE 457

Query: 405 M 405
           M
Sbjct: 458 M 458



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y + G++ +AS +F+ +       WN +++  A++G    ++ L   M  S    +  T 
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 244 TSI---LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           + +    +S   +      H   ++ GF +  S+       Y+         V+SAR  F
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLK-----NHRVDSARKVF 253

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           + +  +DV+SW ++I  Y ++G   +   +F +ML SG + D  T V V + C+ + L+ 
Sbjct: 254 DEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLIS 313

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            GR       +A  F       + L D+  + G +  A  V  +M 
Sbjct: 314 LGRAVHCFGVKAC-FSREDRFCNTLLDMYSKCGDLDSAKVVFREMS 358


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 243/481 (50%), Gaps = 50/481 (10%)

Query: 19  EMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDE 76
           E   PD  +  S++ V      + +  AL  ++       +I   +++++ Y K G +D 
Sbjct: 121 EDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDC 180

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           ARKVFD + E NV SWT++I GY     + E +RLFD MP +  NV SW  ++ G    G
Sbjct: 181 ARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPER--NVASWNAIIGGYMKMG 238

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
            +                     K A + F +MP K++V++  MI  Y  AG+M  A  L
Sbjct: 239 DV---------------------KSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNL 277

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F   P+R++  W+A+I  Y +NG    A+K    M      P++   TS++ +C  +   
Sbjct: 278 FQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNL 337

Query: 257 MLAH---ALAIRLGFEQETS--------LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            LA    + A R   +   +        +  KC             ++  A   FE++  
Sbjct: 338 DLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCG------------NMERAMYLFEKMPK 385

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +D++S+ +++   S HGHG Q   LF RML     PD++ F  +L+ CS AGLV++G   
Sbjct: 386 RDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHY 445

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F +M   Y   P  +HY+C+ D+L R+G++KEA  ++  +P         GALLGAC+L+
Sbjct: 446 FEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAG-AWGALLGACKLY 504

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            D  +A+ +  RLIE++P ++G YVL +N++AA   W + + VR +M ER ++K+   S 
Sbjct: 505 CDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSW 564

Query: 485 I 485
           I
Sbjct: 565 I 565



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 187/443 (42%), Gaps = 70/443 (15%)

Query: 55  QRNIVAESAMIDGYVKA----GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110
           Q+ +  +S ++  ++ A      +  +  VFD +   + + W SL+SGY    Q  +   
Sbjct: 54  QKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIIS 113

Query: 111 LFDRM------------PLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLE 154
           L+ RM            P  LK   S   ++ G A +G I +     ++   T++     
Sbjct: 114 LYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYG 173

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           +  +   AR+ F  M  +++V+W AMI  Y   GN+ +A  LF+LMP+RNV +WNA+I  
Sbjct: 174 KGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGG 233

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL 274
           Y + G   +A K  + M        E    S  T  +G                      
Sbjct: 234 YMKMGDVKSAEKAFDEM-------PEKNVVSFTTMIDG---------------------- 264

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                       +    D+ SAR  F++   +D+++W+A+I  Y+ +G   +  + F  M
Sbjct: 265 ------------YAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEM 312

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-CLADILRRAG 393
                KPD+     ++  CS  G ++  +   +  +R      R  H +  L D+  + G
Sbjct: 313 SSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRC-SVDLRGAHVTAALIDMNAKCG 371

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSSSG-AYV 450
            ++ AM +  KMP  +RD +   +++    +HG    A  + ER++  +L P       +
Sbjct: 372 NMERAMYLFEKMP--KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVI 429

Query: 451 LSANVHAARGE--WDEFAQVRKK 471
           L+A   A   +  W  F  +R K
Sbjct: 430 LTACSRAGLVDEGWHYFEMMRCK 452



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 130/268 (48%), Gaps = 27/268 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G +  A K+FD MS+ + VS  +MI  +    +L +A+ LF  MPE  RN+ + +A
Sbjct: 172 YGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPE--RNVASWNA 229

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I GY+K G V  A K FDE+ E NV S+T++I GY KA  +   R LF + P   ++++
Sbjct: 230 IIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAP--ERDII 287

Query: 124 SWTTVVLGCAHNGLIA-----------------KLEVISWTTMCTGLERNAMTKLAREYF 166
           +W+ ++ G   NG                    K  + S    C+ L    + K    Y 
Sbjct: 288 AWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYA 347

Query: 167 ----VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
               V +    + A  A+I      GNM +A  LF  MP+R++ ++ +++   + +G   
Sbjct: 348 TRCSVDLRGAHVTA--ALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGD 405

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A+ L   M      P++   T ILT+C
Sbjct: 406 QAVSLFERMLGEDLTPDDVAFTVILTAC 433



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 23/247 (9%)

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFER 302
           +++L  C+  ++    HA  I+ G EQ++ L  +      F      +  ++ +   F+R
Sbjct: 33  SALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQ------FISASNSVAHISYSTSVFDR 86

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           + +     W +++  Y        +  L+ RM +    PD  TF  +L  C+  G + +G
Sbjct: 87  VLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEG 146

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
                 + R  G        + L ++  + G +  A +V   M   ER+ V   A++   
Sbjct: 147 MALHGSILRC-GVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMS--ERNVVSWTAMIVGY 203

Query: 423 RLHGDV----RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478
              G++    R+ D + ER +    +  G Y+   +V +A   +DE  +         K 
Sbjct: 204 SSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMPE---------KN 254

Query: 479 VASFSQI 485
           V SF+ +
Sbjct: 255 VVSFTTM 261


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 274/577 (47%), Gaps = 107/577 (18%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE---------- 61
           +A +LF ++ + + VS A+MIT F+R     +AE L+   P   R+ VA           
Sbjct: 131 KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRA 190

Query: 62  ---------------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
                                S+M+ GY K GR+ +AR +FD + E NV +WT++I GYF
Sbjct: 191 GKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVL-------------GCAHNGLIAKL------ 141
           KA   ++G  LF RM  +    V+  T+ +             G   +GL++++      
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDL 310

Query: 142 -----------------------------EVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
                                        + +SW ++ TGL +      A E F +MP K
Sbjct: 311 FLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK 370

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W  MI  +   G +++  ELF +MP+++  TW AMI  +  NG    A+   + M 
Sbjct: 371 DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKML 430

Query: 233 QSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSL-----TYKCTCHYVF 284
           Q    PN  T +S+L+   S   ++E +  H   +++    + S+     +  C C    
Sbjct: 431 QKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCG--- 487

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  + N A   F  +   ++VS+  MI  YS +G G +  +LF+ +  SG +P+ +
Sbjct: 488 -------NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGV 540

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF+ +LS C H G V+ G K F  M  +Y  +P  +HY+C+ D+L R+G + +A  ++S 
Sbjct: 541 TFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIST 600

Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-- 460
           MP  PH     V G+LL A + H  V +A+   ++LIEL+P S+  YV+ + +++  G  
Sbjct: 601 MPCKPHSG---VWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKN 657

Query: 461 -EWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
            + D    ++K   +R+KK    S I +KG+ H  LA
Sbjct: 658 RDCDRIMNIKK--SKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 175/412 (42%), Gaps = 59/412 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C S I+   RN +L +AEA+FR M  S R+IV+  AMI  Y + G++ +A +VFDE+   
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQM--SNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVR 110

Query: 88  NVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV--- 143
              S+ ++I+   K +  + +   LF  +P K  N VS+ T++ G    G   + E    
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEK--NAVSYATMITGFVRAGRFDEAEFLYA 168

Query: 144 ---------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                    ++   + +G  R      A   F  M  K++V+ ++M+  Y   G +  A 
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
            LF+ M +RNV TW AMID Y + G   +G  +  L +  +     N  T   +  +C  
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL-FLRMRQEGDVKVNSNTLAVMFKACRD 287

Query: 253 ML---ENMLAHALAIRLGFEQE-----------TSLTYKCTCHYVFW--------DWGFQ 290
            +   E    H L  R+  E +           + L Y      VF          W   
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSL 347

Query: 291 L-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +        ++ A   FE++  KD+VSWT MI  +S  G   +   LF  M     + D 
Sbjct: 348 ITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM----PEKDN 403

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLM------SRAYGFKPRAEHYSCLADIL 389
           IT+  ++S     G  E+    F+ M        +Y F       + LAD++
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLI 455



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + EA  +F  M   D VS  S+IT  ++   + +A  LF  MP   +++V+ 
Sbjct: 318 SMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMP--GKDMVSW 375

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + MI G+   G + +  ++F  + E +  +WT++IS +      +E    F +M  K   
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++++V+   A           S   +  GL+ +   ++ +   V     D+   N+
Sbjct: 436 PNSYTFSSVLSATA-----------SLADLIEGLQIHG--RVVKMNIVN----DLSVQNS 478

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y   GN   A ++F+ + + N+ ++N MI  Y+ NG    A+KL +++  S   PN
Sbjct: 479 LVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPN 538

Query: 240 ETTCTSILTSC 250
             T  ++L++C
Sbjct: 539 GVTFLALLSAC 549


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/479 (33%), Positives = 253/479 (52%), Gaps = 50/479 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   SA+ID Y K G +++ARK+FDEI E NV SWTS+ISGY +  +  E   LF    
Sbjct: 120 DIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL 179

Query: 117 LK--------LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
           L         +   V   +V+LGC               + C  +   ++T+      V+
Sbjct: 180 LVDETDYDEIVGVGVGVDSVLLGCV-------------ISACARVCVKSVTECVHGLAVK 226

Query: 169 MPNKDIVA-WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
              +  +A  N ++ AY   G ++ + ++F+ M + +V +WN++I  YA+NG    A  L
Sbjct: 227 KGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSL 286

Query: 228 LNLMFQ-SRFMPNETTCTSILTSCEGMLENMLAHALAIRLG---------FEQETSLTYK 277
            + M +      N  T +++L +C        AH+ A+++G          E E +L   
Sbjct: 287 FSDMVKRGEVRYNAVTLSAVLLAC--------AHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
            +   ++   G    V  AR AF+RL+ K+V SWT M+  Y  HGHG +  ++F  M++ 
Sbjct: 339 TSIVDMYCKCG---RVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G KP+ ITFV VL+ CSHAGL+++G   FN M   +  +P  EHYSC+ D+L RAG +KE
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A  ++ +M   + D +V G+LLGACR+H +V + +    +L +L PS+ G YVL +N++A
Sbjct: 456 AYGLIQEMKV-KPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYA 514

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
             G WD+  ++R  M+   + K   +S +E KG+ H  L      P  E  Y  L E++
Sbjct: 515 DAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELN 573



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 47/297 (15%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVIS 145
           +VYSW S+I+ + ++    +    F  M  L L  N  ++   +  C+           S
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCS-----------S 98

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
              +C G       ++ ++ FV     DI   +A+I  Y   G +  A +LF+ +P+RNV
Sbjct: 99  LYDLCAG------KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNV 152

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI---------------LTSC 250
            +W +MI  Y +N     A+     +F+   + +ET    I               +++C
Sbjct: 153 VSWTSMISGYVQNERAREAV----FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISAC 208

Query: 251 EGMLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
             +    +    H LA++ GF  E  L    T    +   G   +++ +R  F+ +E  D
Sbjct: 209 ARVCVKSVTECVHGLAVKKGF--EGCLAVGNTLMDAYAKCG---EISVSRKVFDGMEETD 263

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGR 363
           V SW ++I  Y+ +G   + F LF+ M+K G  + + +T   VL  C+H+G ++ G+
Sbjct: 264 VCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGK 320



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 63/273 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--------------- 52
           G++  + K+FD M + D  S  S+I V+ +N    +A +LF  M                
Sbjct: 247 GEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAV 306

Query: 53  -----------------------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                  E + N+V  ++++D Y K GRV+ ARK FD +   NV
Sbjct: 307 LLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNV 366

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIA-------- 139
            SWT +++GY       E  ++F  M    +K N +++ +V+  C+H GL+         
Sbjct: 367 KSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNK 426

Query: 140 -KLE------VISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAY-----VD 186
            K E      +  ++ M   L R    K A     +M  K D + W +++ A      V+
Sbjct: 427 MKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVE 486

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            G ++ A +LF L P  N   +  + + YA  G
Sbjct: 487 LGEIS-ARKLFKLDPS-NCGYYVLLSNIYADAG 517


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 274/577 (47%), Gaps = 107/577 (18%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE---------- 61
           +A +LF ++ + + VS A+MIT F+R     +AE L+   P   R+ VA           
Sbjct: 131 KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRA 190

Query: 62  ---------------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
                                S+M+ GY K GR+ +AR +FD + E NV +WT++I GYF
Sbjct: 191 GKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVL-------------GCAHNGLIAKLEV---- 143
           KA   ++G  LF RM  +    V+  T+ +             G   +GL++++ +    
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDL 310

Query: 144 -------------------------------ISWTTMCTGLERNAMTKLAREYFVQMPNK 172
                                          +SW ++ TGL +      A E F +MP K
Sbjct: 311 FLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK 370

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W  MI  +   G +++  ELF +MP+++  TW AMI  +  NG    A+   + M 
Sbjct: 371 DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKML 430

Query: 233 QSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSL-----TYKCTCHYVF 284
           Q    PN  T +S+L+   S   ++E +  H   +++    + S+     +  C C    
Sbjct: 431 QKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCG--- 487

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  + N A   F  +   ++VS+  MI  YS +G G +  +LF+ +  SG +P+ +
Sbjct: 488 -------NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGV 540

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF+ +LS C H G V+ G K F  M  +Y  +P  +HY+C+ D+L R+G + +A  ++S 
Sbjct: 541 TFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIST 600

Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-- 460
           MP  PH     V G+LL A + H  V +A+   ++LIEL+P S+  YV+ + +++  G  
Sbjct: 601 MPCKPHSG---VWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKN 657

Query: 461 -EWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
            + D    ++K   +R+KK    S I +KG+ H  LA
Sbjct: 658 RDCDRIMNIKK--SKRIKKDPGSSWIILKGEVHNFLA 692



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 175/412 (42%), Gaps = 59/412 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C S I+   RN +L +AEA+FR M  S R+IV+  AMI  Y + G++ +A +VFDE+   
Sbjct: 53  CNSQISKHARNGNLQEAEAIFRQM--SNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVR 110

Query: 88  NVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV--- 143
              S+ ++I+   K +  + +   LF  +P K  N VS+ T++ G    G   + E    
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEK--NAVSYATMITGFVRAGRFDEAEFLYA 168

Query: 144 ---------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                    ++   + +G  R      A   F  M  K++V+ ++M+  Y   G +  A 
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
            LF+ M +RNV TW AMID Y + G   +G  +  L +  +     N  T   +  +C  
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL-FLRMRQEGDVKVNSNTLAVMFKACRD 287

Query: 253 ML---ENMLAHALAIRLGFEQE-----------TSLTYKCTCHYVFW--------DWGFQ 290
            +   E    H L  R+  E +           + L Y      VF          W   
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSL 347

Query: 291 L-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +        ++ A   FE++  KD+VSWT MI  +S  G   +   LF  M     + D 
Sbjct: 348 ITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM----PEKDN 403

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLM------SRAYGFKPRAEHYSCLADIL 389
           IT+  ++S     G  E+    F+ M        +Y F       + LAD++
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLI 455



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + EA  +F  M   D VS  S+IT  ++   + +A  LF  MP   +++V+ 
Sbjct: 318 SMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMP--GKDMVSW 375

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + MI G+   G + +  ++F  + E +  +WT++IS +      +E    F +M  K   
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++++V+   A           S   +  GL+ +   ++ +   V     D+   N+
Sbjct: 436 PNSYTFSSVLSATA-----------SLADLIEGLQIHG--RVVKMNIVN----DLSVQNS 478

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y   GN   A ++F+ + + N+ ++N MI  Y+ NG    A+KL +++  S   PN
Sbjct: 479 LVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPN 538

Query: 240 ETTCTSILTSC 250
             T  ++L++C
Sbjct: 539 GVTFLALLSAC 549


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 173/601 (28%), Positives = 282/601 (46%), Gaps = 107/601 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--------RNIV 59
           G +  A ++FDE+ QPD VS  +MI  +        A   F  M  S          N++
Sbjct: 93  GNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVL 152

Query: 60  AESA-----------------------------MIDGYVKAGRVDEARKVFDEIYEGNVY 90
           A  A                             +++ Y K G    A+ VFD +   +  
Sbjct: 153 ASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTS 212

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVISWTTM 149
           +W ++IS + +  Q D    LFD+M     ++VSW +++ G  H G  I  LE  S+   
Sbjct: 213 TWNTMISMHMQFCQFDLALALFDQM--TDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 150 CTGLERNAMT--------------KLAREYFVQM-------------------------- 169
            + L+ +  T              KL ++    +                          
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 170 -----------PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
                      P+ +++A+ +++  Y   G++  A  +F+ +  R+V  W AMI  YA+N
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCT---SILTSCEGMLENMLAHALAIRLGFEQETSLT 275
           G    A+ L  LM +    PN  T     S+++S   +      HA+AIRL  E+ +S++
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRL--EEVSSVS 448

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                  ++   G    +  AR  F  +   +D ++WT+MIL+ + HG G +   LF +M
Sbjct: 449 VGNALITMYSRSG---SIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKM 505

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           L+   KPD IT+VGVLS C+H GLVE+G+  FNLM   +  +P + HY+C+ D+L RAG 
Sbjct: 506 LRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGL 565

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           ++EA   +  MP  E D V  G+LL +CR+H  V +A    E+L+ + P++SGAY+  AN
Sbjct: 566 LEEAYNFIRNMPI-EPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALAN 624

Query: 455 VHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKE 508
             +A G+W++ A+VRK M ++ VKK   FS +++K K H       L P R+  Y ++ +
Sbjct: 625 TLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISK 684

Query: 509 V 509
           +
Sbjct: 685 I 685



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 208/488 (42%), Gaps = 100/488 (20%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +++ YVK G   +A ++FDE+     +SW +++S + KA  +D  RR+FD +P    + V
Sbjct: 54  LLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIP--QPDSV 111

Query: 124 SWTTVVLGCAHNGLI-----AKLEVIS---------WTTM---CTGLE--------RNAM 158
           SWTT+++G  H GL      A L ++S         +T +   C   +         + +
Sbjct: 112 SWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFV 171

Query: 159 TKLAREYFVQMPN------------------------KDIVAWNAMITAYVDAGNMAQAS 194
            KL +   V + N                        KD   WN MI+ ++       A 
Sbjct: 172 VKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLAL 231

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSC--- 250
            LF+ M   ++ +WN++I  Y   G +  A++  + M +S  + P++ T  S+L++C   
Sbjct: 232 ALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANR 291

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYV--------------------------- 283
           E +      HA  +R   +   ++       Y                            
Sbjct: 292 ESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTS 351

Query: 284 FWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
             D  F++ D++ AR  F+ L+ +DVV+WTAMI+ Y+ +G       LF  M++ G KP+
Sbjct: 352 LLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPN 411

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS------CLADILRRAGQVK 396
             T   VLS  S    ++ G++        +    R E  S       L  +  R+G +K
Sbjct: 412 NYTLAAVLSVISSLASLDHGKQL-------HAVAIRLEEVSSVSVGNALITMYSRSGSIK 464

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--IELQPSS-SGAYVLSA 453
           +A ++ + +  + RD +   +++ +   HG    A  + E++  I L+P   +   VLSA
Sbjct: 465 DARKIFNHICSY-RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSA 523

Query: 454 NVHAARGE 461
             H    E
Sbjct: 524 CTHVGLVE 531


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 251/467 (53%), Gaps = 20/467 (4%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   N+   + +I  Y++ G ++ AR+VFD +   +  S+ S+I GY K+  +D  R LF
Sbjct: 155 EIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELF 214

Query: 113 DRMPLKLKNVVSWTTVVLGCAHN----GLIAKL-------EVISWTTMCTGLERNAMTKL 161
           D MPL+ KN++SW +++ G A      GL  +L       +++SW T+  G  +    + 
Sbjct: 215 DSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEF 274

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A   F +MP +D+++W+ MI  Y   G++  A  LF+ MP ++V  +N ++  YA+NG  
Sbjct: 275 AHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYY 334

Query: 222 GAAMKLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
             A+++ + M  QS   P+ETT    L++    L ++   A       E   S+T K   
Sbjct: 335 TEALEIFHEMQRQSNLSPDETTLVVALSAIS-QLGHVEKAASMHNYFLENGISVTGKVAV 393

Query: 281 HYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
             +  +   G    + +A L F+ ++ K +  W AMI   + +G G   F +   M +  
Sbjct: 394 ALIDMYSKCG---SIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLS 450

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KPD ITF+GVL+ C+HAGLV++G   F LM + +  +P+ +HY C+ DIL +AG V+ A
Sbjct: 451 VKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGA 510

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
           ++ + +MP    D ++   LL AC+ H +  + + I + L+ +   +S +YVL +N++A 
Sbjct: 511 LKFIEEMPIEPND-IIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYAR 569

Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMREMGYV 504
            G W   ++VR  M+++ + KV   S IE++G  H  L   +   YV
Sbjct: 570 LGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYV 616



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 180/396 (45%), Gaps = 45/396 (11%)

Query: 7   TGKVKEATKLFDEMSQPDP--VSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESA 63
           +G +  A +LFD M   D   +S  SM+  F +  D +  A  LF  MPE  R++V+ + 
Sbjct: 204 SGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPE--RDLVSWNT 261

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I G+ K GR++ A  +F+ + + +V SW+++I GY K   +   R LFD MP   K+VV
Sbjct: 262 IIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMP--DKDVV 319

Query: 124 SWTTVVLGCAHNGLIAK-LEVI-----------SWTTMCTGLERNAMTKLA--------R 163
           ++ T++ G A NG   + LE+              TT+   L  +A+++L          
Sbjct: 320 AFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVAL--SAISQLGHVEKAASMH 377

Query: 164 EYF----VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            YF    + +  K  V   A+I  Y   G++  A  +F+ + Q+ +  WNAMI   ARNG
Sbjct: 378 NYFLENGISVTGKVAV---ALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNG 434

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYK 277
               A  +L  M +    P+  T   +L +C   G+++  L     +R   + E  L + 
Sbjct: 435 LGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHY 494

Query: 278 CTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                +    G    V  A    E   +E  D++ W  ++ A  NH   F +  L A+ L
Sbjct: 495 GCMVDILGKAGL---VEGALKFIEEMPIEPNDII-WRTLLSACQNH-ENFTIGELIAKHL 549

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +    +  ++V + +  +  GL     K   +M +
Sbjct: 550 MTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKK 585



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 31/274 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F   G+++ A  LF+ M + D +S ++MI  + +  D+  A  LF  MP+  +++VA + 
Sbjct: 266 FAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPD--KDVVAFNT 323

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYS--WTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++ GY + G   EA ++F E+   +  S   T+L+       Q+    +        L+N
Sbjct: 324 IMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLEN 383

Query: 122 VVSWTTVV----------LGCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYF 166
            +S T  V           G   N +     + +  +  W  M +G+ RN + KLA    
Sbjct: 384 GISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGML 443

Query: 167 VQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYAR 217
           ++M       D + +  ++ A   AG + +    F LM      +  +  +  M+D   +
Sbjct: 444 LEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGK 503

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            G    A+K +  M      PN+    ++L++C+
Sbjct: 504 AGLVEGALKFIEEM---PIEPNDIIWRTLLSACQ 534



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG----FQLDV 293
           P+      +L  CE   +    HA  I+ G+ + +SLT K   + +         F   V
Sbjct: 12  PSTPPTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYV 71

Query: 294 NSARLAFERLEAK----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              R A +R+       D   W A+I +YS+     +   LF  ML++G   D+ +F  +
Sbjct: 72  FFTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLI 131

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           L  C+   LVE+G++   L+ +           +CL  +  R G ++ A +V  +MP
Sbjct: 132 LKACARVCLVEEGKQIHGLLMK-LEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMP 187



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 112/275 (40%), Gaps = 23/275 (8%)

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHAL 262
           + WNA+I  Y+       A+ L  +M ++ F  ++ + + IL +C  +    E    H L
Sbjct: 91  FLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGL 150

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            ++L       L       Y+        D+  AR  F+R+  +D VS+ +MI  Y   G
Sbjct: 151 LMKLEIGSNLFLLNCLIAMYLRCG-----DIEFARQVFDRMPIQDSVSYNSMIDGYVKSG 205

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-- 380
                  LF  M      P E     ++S  S  G   + +    L    +   P  +  
Sbjct: 206 TIDLARELFDSM------PLEDK--NLISWNSMLGGFAQTKDGIGLALELFEKMPERDLV 257

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
            ++ +     + G+++ A  + ++MP  +RD +    ++      GD+++A  + +   E
Sbjct: 258 SWNTIIGGFAKCGRIEFAHSLFNRMP--KRDVISWSNMIDGYAKLGDIKVARTLFD---E 312

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           +      A+      +A  G + E  ++  +M+R+
Sbjct: 313 MPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQ 347


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/520 (30%), Positives = 269/520 (51%), Gaps = 38/520 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +   G + +A K+FD  S  D VS  SM+  ++   ++ +A+ ++  MPE  RN++A 
Sbjct: 169 NMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPE--RNVIAS 226

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LK 118
           ++MI  + K G V+EA K+F+E+ + ++ SW++LIS Y +    +E   LF  M    + 
Sbjct: 227 NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIM 286

Query: 119 LKNVVSWTT---------VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------- 161
           +  VV  +          V+ G   +GL+ K+ + ++  +     +NA+  +        
Sbjct: 287 VDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNL-----QNALIHMYSSCEEVV 341

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A++ F +    D ++WN+MI+ YV  G + +A  LF+ MP ++  +W+AMI  YA+   
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYK 277
               + L   M      P+ET   S++++C     + +    HA   + G +   ++   
Sbjct: 402 FTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLK--INIILG 459

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
            T   ++   G    V  A   F+ LE K V +W A+IL  + +G   +  + F+ M + 
Sbjct: 460 TTLINMYMKLGC---VEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH 516

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  P+EITFV VL  C H GLV++G + FN M + +   P  +HY C+ D+L RAG +KE
Sbjct: 517 GVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKE 576

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A  ++  M P   D    GALLGAC+ +GD    + IG +L+EL P   G  VL +N++A
Sbjct: 577 AEELIESM-PMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYA 635

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           ++G W +  +VR  M +  V K    S IE  G+ H  LA
Sbjct: 636 SKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLA 675



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 60/244 (24%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+ Q+ ++F+ +   N +  N M+  Y +      A+ +   M +S    +  T   +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 249 SCEGMLENMLAHAL---AIRLGFE-----QETSLTYKCTC----------------HYVF 284
           SC   L       +    +++GF+     Q T +     C                  V 
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 285 WD---WGFQL--DVNSARLAFER-------------------------------LEAKDV 308
           W+    G+ L  +V  A+  ++R                               ++ KD+
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDL 254

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSW+A+I  Y  +    +   LF  M  +G   DE+  + VLS CS   +V  G+    L
Sbjct: 255 VSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314

Query: 369 MSRA 372
           + + 
Sbjct: 315 VVKV 318


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 262/505 (51%), Gaps = 36/505 (7%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           +I  + +   +  A  +F  +P   +N  + + +I  Y ++G  +EA  + D++ + N+ 
Sbjct: 55  LIDFYSKCDSIQSAHKVFHVLP--VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLV 112

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV----SWTTVVLGCAHNGLIAKLEVISW 146
           S+ SLISG        E   +F  M  +  NV+    +  ++V  CA  G    L  +  
Sbjct: 113 SYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHG 172

Query: 147 TTMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
             +  GL  N +                ++   F +MP +D+V+W +M+ AY  A  +  
Sbjct: 173 AAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLED 232

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  LF+ M ++N  +W A+I  +A+NG    A+ L   M +    P+  T  S+L++C  
Sbjct: 233 AHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACAD 292

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYV------FWDWGFQLDVNSARLAFERLEAK 306
           +   ++A    I     + T + Y C    +      +   G    + SA   F+ +  K
Sbjct: 293 LA--LIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCG---QMRSATTLFKGMHEK 347

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           D+VSW ++I  ++ +GHG +   +F RM+++  +P+ +TF+G+LS C H GLV +G +  
Sbjct: 348 DIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRIL 407

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL-GALLGACRLH 425
           + M + YG  PR++HY+ + D+L R  +++EAM ++ K  P   DHV + GALLGACR+H
Sbjct: 408 DSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLI-KRAPKGSDHVGMWGALLGACRIH 466

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRVKKVASFSQ 484
           G++ +A    E L +L+P ++  YV+  N++AA   WDE  QVR+  MER ++K A+ S 
Sbjct: 467 GNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSW 526

Query: 485 IEVKGKDHTLLAPMREMGYVVLKEV 509
           IEV+   H  +A  +E  +  + EV
Sbjct: 527 IEVRNTRHQFVA--KERSHCQINEV 549



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G+++ AT LF  M + D VS  S+IT F +N    ++ A+F  M E+  + N V    ++
Sbjct: 332 GQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLL 391

Query: 66  DGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                 G V E  ++ D + +          +  +I    +  +++E   L  R P    
Sbjct: 392 SACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSD 451

Query: 121 NVVSWTTVVLGCAHNG 136
           +V  W  ++  C  +G
Sbjct: 452 HVGMWGALLGACRIHG 467


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 236/447 (52%), Gaps = 28/447 (6%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWT 126
           +G +  AR++FDE    +V SW +LI GY ++    E   LF R+    K V    V+  
Sbjct: 169 SGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMI 228

Query: 127 TVVLGCAHNG---LIAKLE--VISWTTMCTGLERNAMT---------KLAREYFVQMPNK 172
             V GCA  G   L  +L   V S    CT    NA+          +LA+  F ++ NK
Sbjct: 229 GAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNK 288

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +V+W  MI  +   G M  A  LF+ MP+R+V+ WNA++  Y +N     A+ L + M 
Sbjct: 289 TVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ 348

Query: 233 QSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +S+  PNE T  ++L++C   G LE  M  H    R       +L       Y       
Sbjct: 349 ESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCG--- 405

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             ++  A   F+ +  K+ ++WTAMI   +NHGH  +    F RM+  G +PDEITF+GV
Sbjct: 406 --NIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGV 463

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C HAGLV++GR+ F+LM   Y  + + +HYSC+ D+L RAG + EA ++V+ M P +
Sbjct: 464 LSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM-PMD 522

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D VV GAL  ACR+HG++ + +    +L+EL PS SG YVL AN++A      +  +VR
Sbjct: 523 PDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVR 582

Query: 470 KKMERR-VKKVASFSQIEVKGKDHTLL 495
             M    V+KV   S IE+ G  H  +
Sbjct: 583 VMMRHLGVEKVPGCSCIELNGVVHEFI 609



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 139/327 (42%), Gaps = 47/327 (14%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+   NA +  +  +G+M  A  LF+  P R+V +WN +I  Y R+G    A++L   
Sbjct: 153 SADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWR 212

Query: 231 MFQS--RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
           + +      P+E T    ++ C  M +  L   L      E   S   +CT   +     
Sbjct: 213 LVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRL-----HEFVDSKGVRCTVRLMNAVMD 267

Query: 289 FQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHG----------------------- 322
             +   S  LA   FER++ K VVSWT MI+ ++  G                       
Sbjct: 268 MYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNAL 327

Query: 323 --------HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
                    G +   LF  M +S   P+EIT V +LS CS  G +E G    + + R   
Sbjct: 328 MAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQL 387

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
           +   A   S L D+  + G +K+A+ +  ++P  +++ +   A++     HG    A   
Sbjct: 388 YLSVALGTS-LVDMYAKCGNIKKAICIFKEIP--DKNALTWTAMICGLANHGHADEAIEY 444

Query: 435 GERLIE--LQPSS-SGAYVLSANVHAA 458
            +R+I+  LQP   +   VLSA  HA 
Sbjct: 445 FQRMIDLGLQPDEITFIGVLSACCHAG 471



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D YVK G ++ A+ VF+ I    V SWT++I G+ +   +++ R LFD MP   ++
Sbjct: 263 NAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMP--ERD 320

Query: 122 VVSWTTVVLGCAHN-------GLIAKLE----------VISWTTMCTGLERNAMTKLARE 164
           V  W  ++ G   N        L  +++          +++  + C+ L    M      
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380

Query: 165 YFVQMPNKDIVAW-NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +      VA   +++  Y   GN+ +A  +F  +P +N  TW AMI   A +G    
Sbjct: 381 YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADE 440

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A++    M      P+E T   +L++C
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSAC 467



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 70/272 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---------- 57
           G +++A  LFDEM + D     +++  +++N    +A ALF  M ES+ +          
Sbjct: 304 GMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLL 363

Query: 58  ---------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                      +   ++++D Y K G + +A  +F EI + N  
Sbjct: 364 SACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNAL 423

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +WT++I G       DE    F RM  L L+ + +++  V+  C H GL+          
Sbjct: 424 TWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLV---------- 473

Query: 149 MCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP-Q 202
                      K  R++F  M  K      +  ++ MI     AG++ +A +L N MP  
Sbjct: 474 -----------KEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMD 522

Query: 203 RNVWTWNAMIDRYARNG----PEGAAMKLLNL 230
            +   W A+      +G     E AAMKL+ L
Sbjct: 523 PDAVVWGALFFACRMHGNITLGEKAAMKLVEL 554


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/493 (31%), Positives = 246/493 (49%), Gaps = 65/493 (13%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTT 127
           K+G ++ A +VFD+I   + Y + ++  GY + +       ++ RM  K    N  ++  
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 128 VVLGCA-----HNGLIAKLEVISWTTMCTGLERNAMTKL---------AREYFVQMPNKD 173
           ++  C        G      V+ +     G   N +  +         AR  F  MP +D
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+W ++IT Y   G + +A E+F LMP+RN  +WNAMI  Y ++     A  L + M  
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 234 SRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTY-------KCTCHYV 283
              + ++    S+L++C G+    +    H    + G E ++ L         KC C   
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC--- 302

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    +  A   F  L  K + SW  MI   + HG G     LF  M +    PD 
Sbjct: 303 ---------LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFV VLS C+H+GLVE+G+  F  M+   G KP  EH+ C+ D+L RAG ++EA ++++
Sbjct: 354 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 413

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +MP +  D  VLGAL+GACR+HG+  + + IG+++IEL+P +SG YVL AN++A+ G W+
Sbjct: 414 EMPVNP-DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWE 472

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVK---------GKDHT-----------LLAPMREMG 502
           + A+VRK M +R VKK   FS IE +         G+ H            +L  +R +G
Sbjct: 473 DVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIG 532

Query: 503 YV-----VLKEVD 510
           YV     VL ++D
Sbjct: 533 YVPDTDGVLHDID 545



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 27/256 (10%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D  S  ++I +++    L +A  +F  MP  QR++V+ +++I GY + G VD+AR+VF+ 
Sbjct: 154 DGFSLNNLIHMYVNFQSLEQARRVFDNMP--QRDVVSWTSLITGYSQWGFVDKAREVFEL 211

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E N  SW ++I+ Y ++ ++ E   LFDRM  +L+NVV              + K   
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRM--RLENVV--------------LDKFVA 255

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
            S  + CTGL      K    Y  +   + D      +I  Y   G + +ASE+FN +PQ
Sbjct: 256 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 315

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE----- 255
           + + +WN MI   A +G   AA++L   M +    P+  T  ++L++C   G++E     
Sbjct: 316 KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHY 375

Query: 256 -NMLAHALAIRLGFEQ 270
              +   L ++ G E 
Sbjct: 376 FQYMTEVLGLKPGMEH 391



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 31/203 (15%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           +++A ++FD M Q D VS  S+IT + +   + KA  +F  MPE  RN V+ +AMI  YV
Sbjct: 171 LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPE--RNSVSWNAMIAAYV 228

Query: 70  KAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRL---FDRMPLKLKNV 122
           ++ R+ EA  +FD +   NV    +   S++S       +++G+ +    ++  ++L + 
Sbjct: 229 QSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSK 288

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           ++ T + + C                 C  LE+      A E F ++P K I +WN MI 
Sbjct: 289 LATTVIDMYCK----------------CGCLEK------ASEVFNELPQKGISSWNCMIG 326

Query: 183 AYVDAGNMAQASELFNLMPQRNV 205
                G    A ELF  M +  V
Sbjct: 327 GLAMHGKGEAAIELFKEMEREMV 349



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 10/221 (4%)

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           L SC  M E    H+  IRLG   +     +          G   D+N A   F+++   
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSG---DLNYALEVFDKIPHP 83

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           D   +  +   Y           +++RML     P++ T+  ++  C     +E+G++  
Sbjct: 84  DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIH 143

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             + + +GF       + L  +      +++A RV   MP  +RD V   +L+      G
Sbjct: 144 AHVLK-FGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP--QRDVVSWTSLITGYSQWG 200

Query: 427 DVRMADYIGERLIELQPSS----SGAYVLSANVHAARGEWD 463
            V  A  + E + E    S      AYV S  +H A   +D
Sbjct: 201 FVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 227/433 (52%), Gaps = 32/433 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   S++I  Y K   +  ARKVFDEI E NV SWT++++GY     ++  +R+F+RMP
Sbjct: 139 DVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMP 198

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                        + SW  M +GL +      AR+ F +M  +++V+
Sbjct: 199 ER-----------------------NLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVS 235

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +  MI  Y   G+MA A  LF+  P+++V  W+A+I  Y+RN     A+K+   M     
Sbjct: 236 FTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNV 295

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNS 295
            P+E    S++++C  +  + LA  +   L   Q +  T +        D   +  ++  
Sbjct: 296 KPDEFIMVSLMSACSQLGNSDLAKWVDSYLS--QTSIDTRQAHVLAALIDMHAKCGNMEK 353

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F+ + ++D++   ++I   S HG G +   LF RML  G  PD + F  +L+ CS 
Sbjct: 354 AVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSR 413

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHV 413
            GL+E G   F+ M   Y   P   HY+C+ D+L RAGQ++ A  ++  MP  PH     
Sbjct: 414 GGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHA---C 470

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
             GALLGAC+LHGDV + + +  RL+EL+P  +G+YVL +N++A+  +W + + VR +M 
Sbjct: 471 AWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMK 530

Query: 473 ERRVKKVASFSQI 485
           ER ++K+   S I
Sbjct: 531 ERGIRKIPGCSYI 543



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 138/273 (50%), Gaps = 28/273 (10%)

Query: 8   GKVKE---ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GK KE   A K+FDE+ + + VS  +M+  +    DL  A+ +F  MPE  RN+ + +AM
Sbjct: 151 GKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPE--RNLPSWNAM 208

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I G  KAG +  ARKVFDE+ E NV S+T +I GY K   +   R LFD  P   K+VV+
Sbjct: 209 ISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAP--EKDVVA 266

Query: 125 WTTVVLGCAHN--------------GLIAKLE---VISWTTMCTGLERNAMTKLAREYFV 167
           W+ ++ G + N               +  K +   ++S  + C+ L  + + K    Y  
Sbjct: 267 WSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLS 326

Query: 168 Q--MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           Q  +  +      A+I  +   GNM +A +LF  MP R++    ++I   + +G    A+
Sbjct: 327 QTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAV 386

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
           +L N M     +P+    T ILT+C   G++E+
Sbjct: 387 ELFNRMLDEGLIPDTVAFTVILTACSRGGLIED 419


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/514 (32%), Positives = 256/514 (49%), Gaps = 41/514 (7%)

Query: 15  KLFDEMSQPDPVSCASMITVF--------LRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            L   +S P P    S   VF        L+      A  L R +   Q   +  S M+ 
Sbjct: 57  NLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGL---QPTALVGSKMVA 113

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY----FKARQVDEGRRL--------FDR 114
            Y  +G +D +  VF+ I E +   + S+I  Y    F  R V     +        +  
Sbjct: 114 FYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFT 173

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMP 170
            P  LK+ V   +V +G   +GLI ++    ++   T++     +      A + F  M 
Sbjct: 174 FPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMT 233

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +D+ +WNA++  Y  +G +  A  +F  MP RN+ +W  MI  Y+++G    A+ L + 
Sbjct: 234 IRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDE 293

Query: 231 MFQ--SRFMPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           M +  S   PN  T  S+L +C  +  LE     H LA R+G     S+    T  Y   
Sbjct: 294 MVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA-- 351

Query: 286 DWGFQLDVNSARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
             G  +D   AR  F++L    K++++W  MI AY+++GHG Q    F  M+++G +PD+
Sbjct: 352 KCGSLVD---ARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 408

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF G+LS CSH+GLV+ G K FN MS  Y   PR EHY+C+AD+L RAG++ EA ++V 
Sbjct: 409 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 468

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +M P      + G+LL ACR H ++ MA+    +L  L+P ++G YVL +N++A  G W 
Sbjct: 469 EM-PMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 527

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           E  ++R  ++ +  KK    S IE+ GK H  L 
Sbjct: 528 EVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLG 561



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 41/244 (16%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++ +A K+FD M+  D  S  +++  + ++  +  A A+F  MP   RNIV+ + 
Sbjct: 216 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMP--WRNIVSWTT 273

Query: 64  MIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQ---VDEGRRLFDRMPL 117
           MI GY ++G   +A  +FDE+ +   G   +W +++S      Q   ++ GR++ +    
Sbjct: 274 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE---- 329

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEV-ISWTTM---CTGL--ERNAMTKLAREYFVQMPN 171
                       L C   GL +   V I+ T M   C  L   RN   KL R        
Sbjct: 330 ------------LAC-RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN------E 370

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW----TWNAMIDRYARNGPEGAAMKL 227
           K+++AWN MITAY   G+  QA   F  M Q  +     T+  ++   + +G     +K 
Sbjct: 371 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 430

Query: 228 LNLM 231
            N M
Sbjct: 431 FNHM 434



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEALFR-----A 50
           S +  +G  ++A  LFDEM +      P+ V+  S++    +   L +   +        
Sbjct: 276 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 335

Query: 51  MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYFKARQVDEG 108
           +  +   ++A +AM   Y K G + +AR  FD++   E N+ +W ++I+ Y       + 
Sbjct: 336 LNSNASVLIALTAM---YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQA 392

Query: 109 RRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
              F  M       + +++T ++ GC+H+GL+
Sbjct: 393 VSTFREMIQAGIQPDDITFTGLLSGCSHSGLV 424


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 248/456 (54%), Gaps = 33/456 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++ID Y K  R+D AR  +D++   +  SW S+ISGY +  QV++ R LF+ MP++ +N
Sbjct: 132 NSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMR-RN 190

Query: 122 VVSWTTVVLGCAHNG------------LIAKLEV-------ISWTTMCTGLERNAMTKLA 162
           VV WT ++ G    G            L++  EV       +   + C+ L    + +  
Sbjct: 191 VVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFL 250

Query: 163 REYF--VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
             +    ++P   I+   A+I  Y   G++ +A  +F+ +  +N+ +WNA+I    + G 
Sbjct: 251 SVFIDVNKIPLNTILV-TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGL 309

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
              A+ L   M      PNE T  ++L++C G+    L   + + LG      L      
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLG---RNGLDLNVIL 366

Query: 281 HYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
                D   +   ++ A L F +   KDV  W AMIL  + HG G     +F++M+++G 
Sbjct: 367 ATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGV 426

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P+++TF+GVLS C+H+GLVE+GR  F+ M+  +G  P+ EHY+C+ D+L RAG +KEA 
Sbjct: 427 QPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAY 486

Query: 400 RVVSKM--PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
            +V  M  PP   D ++ GALL ACR+H ++ +AD I E ++  Q  + G  +L +N++A
Sbjct: 487 ELVQNMLIPP---DSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYA 543

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           + G W + A+VR+++ E+R+KK +  S +EV G  H
Sbjct: 544 SSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVH 579



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 187/441 (42%), Gaps = 36/441 (8%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A+ L   +P        ++ +I   +    +D AR V D+      +SW SLI  Y    
Sbjct: 20  AQTLIHGLP-------LQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHG 72

Query: 104 QVDEGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
                  L+ +M            P  LK   +  +V+ G   +  + +L   S   +C 
Sbjct: 73  SPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCN 132

Query: 152 GLE----RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVW 206
            L     +      AR ++  M  +D V+WN++I+ YV  G + +A +LF  MP +RNV 
Sbjct: 133 SLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVV 192

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQS--RFMPNETTCTSILTSCEGMLENMLAHALAI 264
            W AMI+ Y + G     + L   M  S     PN  T   +L++C  +    +   L++
Sbjct: 193 CWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSV 252

Query: 265 RLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            +   +    T   T    ++   G   DV  A   F+ +  K++ SW A+I      G 
Sbjct: 253 FIDVNKIPLNTILVTALIDMYSKCG---DVEKAWRIFDGVSCKNLPSWNAIITGCVQGGL 309

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   L+  M     KP+EIT V VLS C+  G +E GR+    + R  G        +
Sbjct: 310 LEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRN-GLDLNVILAT 368

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--L 441
            L D+  + G++ +A  +  K    E+D  +  A++     HGD R +  +  +++   +
Sbjct: 369 ALVDMYAKCGKIDDACLIFVKTS--EKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGV 426

Query: 442 QPSS-SGAYVLSANVHAARGE 461
           QP+  +   VLSA  H+   E
Sbjct: 427 QPNDVTFIGVLSACNHSGLVE 447



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 70/311 (22%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++  A   +D+M   D VS  S+I+ +++   + KA  LF  MP  +RN+V  +AMI+GY
Sbjct: 143 RLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMP-MRRNVVCWTAMINGY 201

Query: 69  VKAGRVDEARKVF-------DEI-------------------YEG--------------- 87
            K G   E   +F       DE+                   YE                
Sbjct: 202 GKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPL 261

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA-------- 139
           N    T+LI  Y K   V++  R+FD   +  KN+ SW  ++ GC   GL+         
Sbjct: 262 NTILVTALIDMYSKCGDVEKAWRIFD--GVSCKNLPSWNAIITGCVQGGLLEEAIDLYRH 319

Query: 140 ---------KLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVD 186
                    ++ +++  + C GL      +L RE  + +     + +++   A++  Y  
Sbjct: 320 MKAQSVKPNEITLVNVLSACAGL---GALELGREVHLYLGRNGLDLNVILATALVDMYAK 376

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G +  A  +F    +++V  WNAMI   A +G    ++ + + M ++   PN+ T   +
Sbjct: 377 CGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGV 436

Query: 247 LTSCE--GMLE 255
           L++C   G++E
Sbjct: 437 LSACNHSGLVE 447


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/504 (30%), Positives = 252/504 (50%), Gaps = 50/504 (9%)

Query: 26  VSCASMITVFLRNHDLPKA---EALFRAMPESQRNIVAE-SAMIDGYVKAGR-------- 73
           V   S+ T  +R  DL  A   EA+    P  QR   A+ + ++ GY +A R        
Sbjct: 9   VGARSLATAAIRRGDLAGAAEPEAVASTTP--QRKTTADYNRLLAGYARAARPGGRRDRL 66

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133
           + +AR +FD I   +  S+ +L+S +F A  V   R LF  MP   +NV SW T++ G +
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLS 126

Query: 134 HNGLIAKLEV----------ISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMIT 182
            +G + +             ISW  M +          A E F   P+K + V W AM++
Sbjct: 127 RSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVS 186

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNET 241
            Y+D+G++ +A + F  MP R++ +WNA++  Y +N     A+ +   M + +   PNE+
Sbjct: 187 GYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNES 246

Query: 242 TCTSILTSCEGMLE---NMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDV 293
           T +S+L  C  +         H    +L   +  +     ++  C C           D+
Sbjct: 247 TLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCG----------DL 296

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           + A   F  +  +DV++W AMI  Y++HG G +   LF +M   G +P+ ITFV VL+ C
Sbjct: 297 DGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTAC 356

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERD 411
            H G+ + G + F  M   YG + R +HYSC+ D+L RAG ++ A+ ++  MP  PH   
Sbjct: 357 IHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSA 416

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
           +   G LL A R++ ++  A++   +LIE  P ++GAYV  AN++A   +W + ++VR+ 
Sbjct: 417 Y---GTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRW 473

Query: 472 M-ERRVKKVASFSQIEVKGKDHTL 494
           M +  V K   +S +E+ G  H  
Sbjct: 474 MKDNAVVKTPGYSWVEINGVIHVF 497



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 59/295 (20%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +A  LFD + +PD VS  ++++      D+  A  LF AMP + RN+ + + M+ G  
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLS 126

Query: 70  KAGRVDEARKVF---------------------------DEIYEG-----NVYSWTSLIS 97
           ++G V EAR VF                           +E +E      N   WT+++S
Sbjct: 127 RSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVS 186

Query: 98  GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT--TM------ 149
           GY  +  V++  + F+ MP  ++++VSW  VV G   N   ++ E   W   TM      
Sbjct: 187 GYMDSGHVEKAMQFFEAMP--VRSLVSWNAVVAGYVKN---SRAEDALWVFKTMVRDADV 241

Query: 150 -------------CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASE 195
                        C+ L      +   ++  ++P ++ + A  ++++ Y   G++  A +
Sbjct: 242 RPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACK 301

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           LF+ M  R+V  WNAMI  YA +G    A++L   M      PN  T  ++LT+C
Sbjct: 302 LFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTAC 356


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 247/456 (54%), Gaps = 22/456 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K    +  R LFD MP
Sbjct: 159 DLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMP 218

Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A       + +KL       ++ISW +M  G  ++   + A+  
Sbjct: 219 EEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYL 278

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W+ MI  Y   G + QA  LF+ MP R+V ++N+MI  Y +N     A+
Sbjct: 279 FDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEAL 338

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S   P+ETT   +L++   +    L+ A+ + L   E++  L  K     +
Sbjct: 339 EIFSDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAMDMHLYIVEKQFFLGGKLGVALI 396

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L F+ +E K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 397 DMYSKCG---SIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKP 453

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVG+L+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 454 DDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 513

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G+
Sbjct: 514 IEEMPIEPND-VIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLYASFGK 572

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W +  ++R  M ER+++KV   S IE+ G+ H    
Sbjct: 573 WKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFV 608



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 39/372 (10%)

Query: 8   GKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G  + A +LFD M +   + +S  SMI+ + +  D +  A  LF  MP+  +++++ ++M
Sbjct: 205 GSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPD--KDLISWNSM 262

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +FD +   +V +W+++I GY K   V + + LFD+MP   ++VVS
Sbjct: 263 IDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMP--HRDVVS 320

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LE+ S            TT+   L  +A+ +L R     +  +
Sbjct: 321 YNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVL--SAIAQLGRLSKAMDMHL 378

Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K          A+I  Y   G++  A  +F  +  +++  WNAMI   A +G   +
Sbjct: 379 YIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGES 438

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A  +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C  
Sbjct: 439 AFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 498

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML--KSG 338
             +      +L  N   +    +E  DV+ W    LA  NH   F+   L A+ L  ++G
Sbjct: 499 DILSRSGSIELAKN--LIEEMPIEPNDVI-WRTF-LAACNHHKEFETGELVAKHLIWEAG 554

Query: 339 TKPDEITFVGVL 350
             P     +  L
Sbjct: 555 YNPSSYVLLSNL 566



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 17/202 (8%)

Query: 230 LMFQSRFMPNETTCTSI--LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           L+F     P  +   +I  L SC+   +    HA  +  GF +  +LT +    +     
Sbjct: 2   LVFAHSHQPWSSISPTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRR 61

Query: 288 GFQLDVNSARLAFERL----------EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
            + ++   AR  F             + +D   W A+I ++S+     +   LF  ML++
Sbjct: 62  PYXVEF--ARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLEN 119

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G   D+ +   VL  CS  GLV++G +    + +  G        +CL  +  + G +  
Sbjct: 120 GVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGWLGF 178

Query: 398 AMRVVSKMPPHERDHVVLGALL 419
           A ++  +MP  +RD V   +++
Sbjct: 179 ARQIFDRMP--QRDSVSYNSMI 198



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 43/250 (17%)

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENMLAH 260
           + + WNA+I  ++       A+ L  LM ++    ++ + + +L +C   G++ E M  H
Sbjct: 89  DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIH 148

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDW-GFQLDV-------------------------N 294
               + G   +  L       Y+   W GF   +                          
Sbjct: 149 GFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTE 208

Query: 295 SARLAFERL--EAKDVVSWTAMILAYSNHGHGFQV-FRLFARMLKSGTKPDEITFVGVLS 351
           SAR  F+ +  E K+++SW +MI  Y+    G  +  +LF+ M       D I++  ++ 
Sbjct: 209 SARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEM----PDKDLISWNSMID 264

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
                G +E  +  F++M R          +S + D   + G V +A  +  +MP   RD
Sbjct: 265 GYVKHGRIEDAKYLFDVMPRR-----DVVTWSTMIDGYAKLGFVHQAKTLFDQMP--HRD 317

Query: 412 HVVLGALLGA 421
            V   +++  
Sbjct: 318 VVSYNSMIAG 327


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 268/546 (49%), Gaps = 52/546 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPV----SCASMITVFLRNHDLPKAEALFRAMPESQR--N 57
           F    + +EA   F  M + D V    S  S ++   R  DL     +   + +S+   +
Sbjct: 131 FAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLD 190

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP- 116
           +   S +ID Y K G V  AR+VFD + E NV SW  LI+ Y +     E    F RM  
Sbjct: 191 VFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE 250

Query: 117 LKLK-NVVSWTTVVLGCA---------------------HNGLIAKLEVISWTTMCTGLE 154
           L  K + V+  +VV  CA                      N LI    ++     C  + 
Sbjct: 251 LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVN 310

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                  AR  F +MP ++ V+   M++ Y  + ++  A  +F  + Q+++ +WNA+I  
Sbjct: 311 E------ARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAG 364

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---AHALAIRLGFE-- 269
           Y +NG    A+ L  ++ +    P   T  ++L +   + +  L   AH+  ++ GF   
Sbjct: 365 YTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQ 424

Query: 270 --QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
             +E  +    +   ++   G    V      FE +  KD VSW  MI+ Y+ +G+G + 
Sbjct: 425 SGEEPDIFVGNSLIDMYMKCG---SVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEA 481

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF +ML+SG KPD +T +G L  CSHAGLVE+GR+ F  M++ +G  P  +HY+C+ D
Sbjct: 482 LELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVD 541

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG ++EA  ++  MP  + D VV  +LL AC++H ++ +  Y+ E++ E+ P+SSG
Sbjct: 542 LLGRAGCLEEAKDLIESMPK-QPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSG 600

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREM 501
            YVL AN+++  G W +   VRK M RR V K    S I+++   H  +      P ++ 
Sbjct: 601 PYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKE 660

Query: 502 GYVVLK 507
            Y +LK
Sbjct: 661 IYSILK 666



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 180/410 (43%), Gaps = 59/410 (14%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +  ++ +ID Y K G +D ARKVFD + E NV+S+ S+IS   +   VDE   LF  MP 
Sbjct: 59  VFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMP- 117

Query: 118 KLKNVVSWTTVVLGCAHNGLIAK--------------LEVISWTTMCTGLERNAMTKLAR 163
             K+  SW +++ G A +    +              L   S+ +  +   R    KL  
Sbjct: 118 -EKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGA 176

Query: 164 EYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           +    +       D+   + +I  Y   G +  A  +F+ M ++NV +WN +I  Y +NG
Sbjct: 177 QIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNG 236

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLG-FEQE---- 271
           P   A++    M +  F P+E T  S++++C  +    E +  HA  ++   F  +    
Sbjct: 237 PAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILG 296

Query: 272 ---TSLTYKCT------CHY-------------VFWDWGFQLDVNSARLAFERLEAKDVV 309
                +  KC       C +             +   +     V +AR  F  ++ KD+V
Sbjct: 297 NALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIV 356

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW A+I  Y+ +G   +   LF  + +    P   TF  +L+  ++   +E GR+  + +
Sbjct: 357 SWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHV 416

Query: 370 SRAYGFK------PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
            + +GF+      P     + L D+  + G V+E +RV   M   E+DHV
Sbjct: 417 VK-HGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMV--EKDHV 463


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 160/509 (31%), Positives = 262/509 (51%), Gaps = 37/509 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  DL  A+ +F  M    RN  + +AMI  ++  GRVD A   F+ + E ++
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRM--KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDI 204

Query: 90  YSWTSLISGYFKARQVDEGRRLF-----------DRMPLK--LKNVVSWTTVVLGCAHNG 136
            SW S+I+G  +    +E  + F           DR  L   L    +   +  G   +G
Sbjct: 205 VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHG 264

Query: 137 LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQ--MPNKDIVAWNAMITAYVDAGNM 190
            I +    +   +   L     ++   ++AR    Q  + + D++A+ A++  YV  G++
Sbjct: 265 YIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDI 324

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT-- 248
             A ++FN +   +V  W AMI  Y +NG    A+++   M      PN  T  ++L+  
Sbjct: 325 TPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSAS 384

Query: 249 -SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL-EAK 306
            S   +      HA AIR G     S+    T  Y          +N AR  F  L + +
Sbjct: 385 SSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAG-----SINGARKVFNLLRQNR 439

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           D VSWT+MI+A + HG G +   LF +ML  G KPD IT+VGVLS C+H GLVE+GR  F
Sbjct: 440 DTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYF 499

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +LM   +   P   HY+C+ D+  RAG ++EA + V  M P E D +  G+LL +C+++ 
Sbjct: 500 DLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENM-PMEPDVIAWGSLLSSCKVYK 558

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           +V +A    ERL+ ++P++SGAY   ANV+++ G+WD+ A++RK M+ R VKK    S +
Sbjct: 559 NVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618

Query: 486 EVKGKDHTL-----LAPMREMGYVVLKEV 509
           +++ K H       L P ++  Y ++ ++
Sbjct: 619 QIQNKTHVFGVEDGLHPQKDEIYKMMDKI 647



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 190/447 (42%), Gaps = 61/447 (13%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  LF  MP   +   + + ++ GY K G++++A +VFD I   +  SWT++I GY +  
Sbjct: 29  AHDLFNEMP--VKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMG 86

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNG----------LIAKLEVISWTTMCT 151
           + ++  ++F  M     L    + T V+  CA  G           + KL + +   +  
Sbjct: 87  RFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVAN 146

Query: 152 GL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            L     +    K+A+  F +M  ++  +WNAMI+ +++ G +  A   F L+ +R++ +
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVS 206

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTCTSILTSC---EGMLENMLAHALA 263
           WN+MI    ++G +  A++  + + + +   P+  +  S L++C   E +      H   
Sbjct: 207 WNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYI 266

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQL-----------------------------DVN 294
           +R  F+   ++       Y     G ++                             D+ 
Sbjct: 267 VRTMFDASGAVGNALISMYA-KSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDIT 325

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F  L+  DVV+WTAMI+ Y  +G       +F  M+  G +P+  T   +LS  S
Sbjct: 326 PARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS 385

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               +  G++      R+ G        + L  +  +AG +  A R V  +    RD V 
Sbjct: 386 SVTSLNHGKQIHASAIRS-GEALSPSVGNALTTMYAKAGSINGA-RKVFNLLRQNRDTVS 443

Query: 415 LGALLGACRLHGDVRMADYIGERLIEL 441
             +++ A   HG       +GE  IEL
Sbjct: 444 WTSMIMALAQHG-------LGEEAIEL 463


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/471 (33%), Positives = 255/471 (54%), Gaps = 35/471 (7%)

Query: 55   QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
            + ++   SA+ID Y K G++ +AR +FDEI   NV SWTS+I+GY +  Q D    LF  
Sbjct: 1174 ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF-- 1231

Query: 115  MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
                 K+ +   T V    +N  +  + ++S  + C+ +    +T+    + V+   +  
Sbjct: 1232 -----KDFLEEETEVED-GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 1285

Query: 174  IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            I   N ++ AY   G    + ++F+ M +++  +WN+MI  YA++G  G A+++ + M +
Sbjct: 1286 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 1345

Query: 234  S---RFMPNETTCTSILTSCEGMLENMLAHALAIRLG---FEQ--ETSLTYKCTCHYVFW 285
                R+  N  T +++L +C        AHA A+R G    +Q  +  L Y         
Sbjct: 1346 HVGVRY--NAVTLSAVLLAC--------AHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 1395

Query: 286  DWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D   +   V  A+  F+R++ K+V SWTAM+  Y  HG   +   +F +M+++G KP+ I
Sbjct: 1396 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 1455

Query: 345  TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            TFV VL+ CSHAGLVE+G   FN M   Y  +P  EHY C+ D+  RAG + EA  ++ +
Sbjct: 1456 TFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR 1515

Query: 405  MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
            M   + D VV G+LLGACR+H +V + +   ++L EL P + G YVL +N++A  G W +
Sbjct: 1516 M-KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 1574

Query: 465  FAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
              ++R  M+ R++ K   FS +E+KG+ H  L      P  EM Y  L+++
Sbjct: 1575 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKL 1625



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 38/363 (10%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           +I  Y   GR+  A  +F +I     ++W  +I         ++   L+  M        
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFV 167
               P  +K   ++ ++ LG   +G + K     +V     +     +   T+ A + F 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +M  +++V+W  +I+  +  G++ +A  +F+ +P +NV +W AMI+ Y RN     A++L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL-------AIRLGFEQETSLT---YK 277
              M      PNE T  S++ +C  M    L   +        I +G    T+L     K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C              +  A   FE +  K + +W +MI +   HG G +   LF+ M + 
Sbjct: 305 CG------------SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV 352

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KPD ITF+GVL  C H   V++G   F  M++ YG  P  EHY C+ ++  R+  + E
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDE 412

Query: 398 AMR 400
           A +
Sbjct: 413 AFK 415



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 19/197 (9%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           RN+V+ + +I G +  G + EAR++FDEI   NV SWT++I+GY + +Q +E   LF RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +    N  +  +++  C   G++         T+  G+   A+ K   E  V +    
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGIL---------TLGRGIHDYAI-KNCIEIGVYL---- 294

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
                A+I  Y   G++  A E+F  MP++++ TWN+MI     +G    A+ L + M +
Sbjct: 295 ---GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMER 351

Query: 234 SRFMPNETTCTSILTSC 250
               P+  T   +L +C
Sbjct: 352 VNVKPDAITFIGVLCAC 368



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 83/371 (22%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------RNIVAE 61
            G++K+A  LFDE+   + VS  SMIT +++N     A  LF+   E +       N+  +
Sbjct: 1191 GQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLD 1250

Query: 62   S---------------------------------------AMIDGYVKAGRVDEARKVFD 82
            S                                        ++D Y K G+   ++KVFD
Sbjct: 1251 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFD 1310

Query: 83   EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIA 139
             + E +  SW S+I+ Y ++    E   +F  M   +    N V+ + V+L CAH G + 
Sbjct: 1311 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 1370

Query: 140  KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
              + I           + + K+  EY       ++    ++I  Y   G +  A + F+ 
Sbjct: 1371 AGKCI----------HDQVIKMDLEY-------NVCVGTSIIDMYCKCGRVEMAKKTFDR 1413

Query: 200  MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-- 255
            M ++NV +W AM+  Y  +G    A+ +   M ++   PN  T  S+L +C   G++E  
Sbjct: 1414 MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473

Query: 256  ----NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
                N + H   I  G E      Y C        +G    +N A    +R++ K D V 
Sbjct: 1474 WHWFNAMKHKYDIEPGIEH-----YGCMVDL----FGRAGCLNEAYNLIKRMKMKPDFVV 1524

Query: 311  WTAMILAYSNH 321
            W +++ A   H
Sbjct: 1525 WGSLLGACRIH 1535



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 40/261 (15%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y   G +A A  LF  +     +TWN +I     NG    A+ L   M       +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
           + T   ++ +C   L      + H   I+ GF  +           +KC  H  F    F
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCG-HTRFALKVF 183

Query: 290 QL--------------------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
           +                     D+  AR  F+ + +K+VVSWTAMI  Y  +    +   
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE----HYSCL 385
           LF RM      P+E T V ++  C+  G++  GR   +     Y  K   E      + L
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGVYLGTAL 298

Query: 386 ADILRRAGQVKEAMRVVSKMP 406
            D+  + G +K+A+ V   MP
Sbjct: 299 IDMYSKCGSIKDAIEVFETMP 319



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 117/298 (39%), Gaps = 59/298 (19%)

Query: 193  ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
            A+  +  + + NV +WN++I   AR G    A++  + + +   +P  ++    + SC  
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 253  ---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
               ++   ++H  A   GF  ET L        ++   G    +  AR  F+ +  ++VV
Sbjct: 1155 LCDLVSGRMSHQQAFVFGF--ETDLFVSSALIDMYSKCG---QLKDARALFDEIPLRNVV 1209

Query: 310  SWTAMILAYSNHGHGFQVFRLFARMLKSGTKP--------DEITFVGVLSDCS------- 354
            SWT+MI  Y  +        LF   L+  T+         D +  V VLS CS       
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGI 1269

Query: 355  ----HAGLVEKG------------------------RKTFNLMSRAYGFKPRAEHYSCLA 386
                H  +V+KG                        +K F+ M            ++ + 
Sbjct: 1270 TEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS-----WNSMI 1324

Query: 387  DILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
             +  ++G   EA+ V   M  H     + V L A+L AC   G +R    I +++I++
Sbjct: 1325 AVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 42/236 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++EA ++FDE+   + VS  +MI  ++RN    +A  LF+ M     NI      +  
Sbjct: 205 GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM--QAENIFPNEYTMVS 262

Query: 68  YVKA----GRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            +KA    G +   R + D       E  VY  T+LI  Y K   + +   +F+ MP K 
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK- 321

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIV 175
                                  + +W +M T L  + + + A   F +M       D +
Sbjct: 322 ----------------------SLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAMK 226
            +  ++ A V   N+ +    F  M Q          +  M + YAR+     A K
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 290  QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             L  N A   ++ ++  +V SW ++I   +  G   +  R F+ + K G  P   +F   
Sbjct: 1089 SLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT 1148

Query: 350  LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            +  CS    +  GR +    +  +GF+      S L D+  + GQ+K+A  +  ++P
Sbjct: 1149 IKSCSALCDLVSGRMSHQ-QAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 1204


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 225/441 (51%), Gaps = 28/441 (6%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  +    +A+ID Y K   + +A+KVFDE+   +V SW + ++   +  +VD  R +FD
Sbjct: 232 SAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFD 291

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            MP K                       + +SW TM  G  +    + A E F +MP ++
Sbjct: 292 EMPEK-----------------------DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRN 328

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+W+ +++AY   G+M  A  +F+ MP +N+ TW  M+   A+ G    A +L   M  
Sbjct: 329 VVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMD 388

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +    +     SIL +C       LA    I     Q         C+ +   +     V
Sbjct: 389 AAIELDVIAVVSILAACAE--SGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 446

Query: 294 NSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           N A   F+  +  KD+VSW  +I  ++ HG G +   LFA+M + G  PD +T + VLS 
Sbjct: 447 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 506

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+H GLVE+GR+ F  M   YG KP+ EHY C+ D+L R G +KEA+ ++ +M P E + 
Sbjct: 507 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRM-PWEPNE 565

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           V+ G+LL ACRLH +V  A+     L  LQPSS+G Y + +N++A  G+W + A+ R +M
Sbjct: 566 VIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQM 625

Query: 473 E-RRVKKVASFSQIEVKGKDH 492
           +    +K A  S IE+    H
Sbjct: 626 KGTGSQKTAGSSWIELNEAFH 646



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 138/263 (52%), Gaps = 23/263 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +A K+FDEM+  D VS  + +   +R  ++  A ++F  MPE  ++ V+ + M+DGY 
Sbjct: 252 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPE--KDTVSWNTMLDGYA 309

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           KAG  ++A ++F  +   NV SW++++S Y K   ++  R +FD+MP   KN+V+WT +V
Sbjct: 310 KAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMP--AKNLVTWTIMV 367

Query: 130 LGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREYFVQMP-N 171
             CA  GL+ +                 + V+S    C      A+ K    +  Q   +
Sbjct: 368 SACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLS 427

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +  +  NA++  +   G + +A  +F+  + ++++ +WN +I  +A +GP   A++L   
Sbjct: 428 RSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQ 487

Query: 231 MFQSRFMPNETTCTSILTSCEGM 253
           M Q  F P+  T  ++L++C  M
Sbjct: 488 MKQQGFHPDAVTLINVLSACTHM 510


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 267/556 (48%), Gaps = 79/556 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVF---------------LRNHDLPKAEALFRAM 51
            G  + A +LFD + QPDP +C+++I+ F               LR   +    ++F  +
Sbjct: 79  VGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTV 138

Query: 52  PES----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
            ++                        +    +A+I  Y K   V+ AR+VFD++   +V
Sbjct: 139 AKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGC----------AHNGL 137
            SWTS+ S Y        G  +F  M       N V+ ++++  C          A +G 
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGF 258

Query: 138 IAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             +  +I    +C+ L     R    K AR  F  MP++D+V+WN ++TAY       + 
Sbjct: 259 AVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKG 318

Query: 194 SELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
             LF+ M  + V     TWNA+I     NG    A+++L  M    F PN+ T +S L +
Sbjct: 319 LALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPA 378

Query: 250 CEGMLENMLAHALAIRLGFEQET---------SLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           C  +LE       ++R+G E             LT      Y++   G   D+N +R  F
Sbjct: 379 CS-ILE-------SLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCG---DLNLSRNVF 427

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           + +  KDVV+W  MI+A + HG+G +V  LF  ML+SG KP+ +TF GVLS CSH+ LVE
Sbjct: 428 DMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVE 487

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G + FN M R +  +P A HY+C+ D+  RAG++ EA   + +M P E      GALLG
Sbjct: 488 EGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRM-PMEPTASAWGALLG 546

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKV 479
           ACR++ +V +A     +L E++P++ G YV   N+      W E ++ R  M ER + K 
Sbjct: 547 ACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKT 606

Query: 480 ASFSQIEVKGKDHTLL 495
              S ++V  + HT +
Sbjct: 607 PGCSWLQVGDRVHTFV 622



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 136/320 (42%), Gaps = 30/320 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLK 120
           ++   +  G    A+++FD I + +  + ++LIS +      +E  RL+  +    +K  
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V + TV   C  +G  ++++ +    +  G+  +A                    NA+
Sbjct: 132 NSV-FLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLG-----------------NAL 173

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I AY     +  A  +F+ +  ++V +W +M   Y   G     + +   M  +   PN 
Sbjct: 174 IHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNS 233

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T +SIL +C   + +      H  A+R G  +   +     C  +   +   L V  AR
Sbjct: 234 VTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFV-----CSALVSLYARCLSVKQAR 288

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
           L F+ +  +DVVSW  ++ AY  +    +   LF++M   G + DE T+  V+  C   G
Sbjct: 289 LVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENG 348

Query: 358 LVEKGRKTFNLMSRAYGFKP 377
             EK  +    M +  GFKP
Sbjct: 349 QTEKAVEMLRKM-QNLGFKP 367


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/480 (31%), Positives = 252/480 (52%), Gaps = 35/480 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   S ++D Y K G +  ARKVFDE+ E NV  + +LI G  +  +V++ +RLF  M  
Sbjct: 178 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEM-- 235

Query: 118 KLKNVVSWTTVVLGCAHNGL------------IAKLEVISWT-----TMCTGLERNAMTK 160
           + ++ +SWT+++ G   NGL            +  L++  +T     T C G+      K
Sbjct: 236 RERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGK 295

Query: 161 LAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
               Y ++   KD I   +A++  Y    N+  A  +F  M  +NV +W AM+  Y +NG
Sbjct: 296 QVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNG 355

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTY 276
               A+K  + M +    P++ T  S+++SC  +    E    HA A+  G      +++
Sbjct: 356 YSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGL-----ISF 410

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
               + +   +G    +  +   F  +  KD V+WTA++  Y+  G   +   LF  ML 
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLA 470

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            G KPD++TF+GVLS CS AGLVEKG + F  M   +G  P  +HY+C+ D+  RAG+++
Sbjct: 471 HGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIE 530

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA   ++KM P   D +    LL +CR +G++ +  +  E L+EL P ++ +YVL ++V+
Sbjct: 531 EARNFINKM-PFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVY 589

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           AA+G+W+E A++RK M ++ ++K    S I+ K + H   A     P  +  Y  L++++
Sbjct: 590 AAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLN 649



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 206/457 (45%), Gaps = 81/457 (17%)

Query: 28  CASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           CA ++ +    H+  KA+ L     + +P  +  ++  + +I  Y K G +  A KVFD+
Sbjct: 13  CA-LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLL--NNLISSYAKLGSIPYACKVFDQ 69

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK--- 140
           +   N+YSW +++S Y K  +V E   LFD MP   ++ VSW +++ G A  GLI +   
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMP--RRDGVSWNSLISGYAGCGLIYQSVK 127

Query: 141 -------------LEVISWTTM--------CTGLERN----------------------- 156
                        L  I+++T+        C  L R                        
Sbjct: 128 AYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDM 187

Query: 157 ----AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
                M   AR+ F ++P K++V +N +I   +  G +  +  LF  M +R+  +W +MI
Sbjct: 188 YSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMI 247

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFE 269
             + +NG +  A+ +   M       ++ T  S+LT+C G++   E    HA  IR  ++
Sbjct: 248 TGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYK 307

Query: 270 QETSLTYK-----CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
               +        C C           ++ SA   F+++  K+VVSWTAM++ Y  +G+ 
Sbjct: 308 DNIFVASALVDMYCKCK----------NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 357

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  + F+ M K G +PD+ T   V+S C++   +E+G + F+  +   G        + 
Sbjct: 358 EEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNA 416

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           L  +  + G ++++ R+ +++    +D V   AL+  
Sbjct: 417 LVTLYGKCGSIEDSHRLFNEIS--FKDEVTWTALVSG 451


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 279/609 (45%), Gaps = 121/609 (19%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------ 54
           TG V++A ++FD+MS+ +  S  +++ ++    D  +   LF  M      P+       
Sbjct: 58  TGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKV 117

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    + N   + +++D ++K GR+D AR+ F+EI   +V
Sbjct: 118 FKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV 177

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH----------NGL 137
           + W  ++SGY    +  +   +F +M L+    N ++  + V  C +          +G 
Sbjct: 178 FMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 237

Query: 138 IAKLE-----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM--ITAY 184
             K+E           ++ +   C  +E      +AR  F  +   D+V+WNAM  +T +
Sbjct: 238 CIKVEELDSDLLVGNSLVDYYAKCRSVE------VARRKFGMIKQTDLVSWNAMLAVTGF 291

Query: 185 VDAGNMAQASELFNLM----------PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              G+   A E F  M            R+V  WN++I   A++G    A+ LL  M  S
Sbjct: 292 TQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLS 351

Query: 235 RFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD----W 287
               N  T  S L +C     + +    H   IR G +         TC+++       +
Sbjct: 352 NVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD---------TCNFILNSLIDMY 402

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G    +  +R  F+ +  +D+VSW  MI  Y  HG G     LF +    G KP+ ITF 
Sbjct: 403 GRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 462

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +LS CSH+GL+E+G K F +M   Y   P  E Y+C+ D+L RAGQ  E +  + KM P
Sbjct: 463 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-P 521

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E +  V G+LLGACR+H +  +A+Y    L EL+P SSG YVL AN+++A G W++ A+
Sbjct: 522 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 581

Query: 468 VRKKM-ERRVKKVASFSQIEVKGKDHTLLA--------------------PMREMGYV-- 504
           +R  M ER V K    S IEVK K H+ +                      ++E+GYV  
Sbjct: 582 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPD 641

Query: 505 ---VLKEVD 510
              VL++VD
Sbjct: 642 TNFVLQDVD 650



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 163/414 (39%), Gaps = 74/414 (17%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLK 118
           S +++ Y + G V++AR++FD++ E NV+SWT+++  Y      +E  +LF  M    ++
Sbjct: 49  SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 108

Query: 119 LKNVVSWTTVVLGCAH--NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
             + V +  V   C+   N  + K +V  +  +  G E N+  K                
Sbjct: 109 PDHFV-FPKVFKACSELKNYRVGK-DVYDY-MLSIGFEGNSCVK---------------- 149

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             +++  ++  G M  A   F  +  ++V+ WN M+  Y   G    A+ +   M     
Sbjct: 150 -GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGV 208

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIR---LGFEQETS--------LTYKCTCHYV-- 283
            PN  T  S +++C  +  ++L H   I    +  E+  S        + Y   C  V  
Sbjct: 209 KPNSITIASAVSACTNL--SLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 266

Query: 284 ------------------------FWDWG-------FQLDVNSARLAFERLEAKDVVSWT 312
                                   F  +G       F   ++ A   F  L  +DVV W 
Sbjct: 267 ARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWN 326

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           ++I A +  G       L   M  S  + + +T V  L  CS    + +G++    + R 
Sbjct: 327 SIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC 386

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            G        + L D+  R G ++++ R+   MP  +RD V    ++    +HG
Sbjct: 387 -GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP--QRDLVSWNVMISVYGMHG 437



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 138/297 (46%), Gaps = 47/297 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFR---AMPE 53
            S +   G+ K+A  +F +M     +P+ ++ AS ++       L     +      + E
Sbjct: 184 VSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE 243

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL--ISGYFKARQVDEGRRL 111
              +++  ++++D Y K   V+ AR+ F  I + ++ SW ++  ++G+ +          
Sbjct: 244 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEF 303

Query: 112 FDRM--------PLKLKNVVSWTTVVLGCAHNG-------LIAKLEV----ISWTTMCTG 152
           F RM         L  ++VV W +++  CA +G       L+ ++ +    ++  TM + 
Sbjct: 304 FQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSA 363

Query: 153 LERNAMTKLAR-------EYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQR 203
           L   A +KLA          F+     D   +  N++I  Y   G++ ++  +F+LMPQR
Sbjct: 364 LP--ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 421

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM---PNETTCTSILTSC--EGMLE 255
           ++ +WN MI  Y   G  G  M  +NL  Q R M   PN  T T++L++C   G++E
Sbjct: 422 DLVSWNVMISVY---GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 475


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 242/474 (51%), Gaps = 47/474 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGY-----------FKARQVDEGRRLFDRMP 116
           Y   GR+D +  +F      +V+ WT++I G+           F A+ + +G    +   
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG---VEPNA 128

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK 172
               +++    +  G A +    KL   S   + TGL     R      A++ F  MP K
Sbjct: 129 FTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEK 188

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +V+  AM+T Y   G +  A  LF+ M +R+   WN MID Y +NG    A+ L   M 
Sbjct: 189 SLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 248

Query: 233 QSRFMPNETTCTSILTSCE--GMLEN-MLAHAL----AIRLGFEQETSLT---YKCTCHY 282
           +++  PNE T  S+L++C   G LE+    H+      I+      T+L     KC    
Sbjct: 249 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG--- 305

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     +  ARL F++++ KDVV+W +MI+ Y+ HG   +  +LF  M + G  P 
Sbjct: 306 ---------SLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPT 356

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITF+G+LS C H+G V +G   FN M   YG +P+ EHY C+ ++L RAG V++A  +V
Sbjct: 357 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 416

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             M   E D V+ G LLGACRLHG + + + I E L++   ++SG Y+L +N++AA G W
Sbjct: 417 KNMNI-EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNW 475

Query: 463 DEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           D  A++R  M +  VKK    S IEV  K H  LA     P R+  Y++L+E++
Sbjct: 476 DGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEIN 529



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 42/276 (15%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           +Y   G +  +  LF      +V+ W A+I  +A  G    A+     M      PN  T
Sbjct: 71  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 130

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQE------------------------------- 271
            +SIL  C  +      H+ A++LGF+ +                               
Sbjct: 131 FSSILKLCP-IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKS 189

Query: 272 -TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
             SLT   TC      +    ++++AR+ F+ +E +D V W  MI  Y+ +G   +   L
Sbjct: 190 LVSLTAMLTC------YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 243

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RMLK+  KP+E+T + VLS C   G +E GR   + +    G +      + L D+  
Sbjct: 244 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYS 302

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + G +++A  V  K+   ++D V   +++    +HG
Sbjct: 303 KCGSLEDARLVFDKID--DKDVVAWNSMIVGYAMHG 336



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 23/225 (10%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
             ++ V+ R  D+  A+ LF  MPE  +++V+ +AM+  Y K G +D AR +FD + E +
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPE--KSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVIS 145
              W  +I GY +    +E   LF RM LK K   N V+  +V+  C   G +  LE   
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSAC---GQLGALESGR 276

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W    + +E N +              ++    A++  Y   G++  A  +F+ +  ++V
Sbjct: 277 WVH--SYIENNGI------------QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 322

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             WN+MI  YA +G    A++L   M +    P   T   IL++C
Sbjct: 323 VAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 367



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 60/242 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G++  A  LFD M + D V    MI  + +N    +A  LFR M ++             
Sbjct: 204 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 263

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q N+   +A++D Y K G +++AR VFD+I + +V 
Sbjct: 264 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 323

Query: 91  SWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +W S+I GY       E  +LF    RM L   N +++  ++  C H+G + +     W 
Sbjct: 324 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN-ITFIGILSACGHSGWVTE----GW- 377

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL---FNLMPQRN 204
                   +   K+  EY ++     I  +  M+     AG++ QA EL    N+ P   
Sbjct: 378 --------DIFNKMKDEYGIE---PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 426

Query: 205 VW 206
           +W
Sbjct: 427 LW 428


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 151/475 (31%), Positives = 253/475 (53%), Gaps = 29/475 (6%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
            S+I+++ +N  L  A  +F     S R++V+ +A+I GYV  G ++ A+K+FDEI   +
Sbjct: 128 TSLISMYAQNGRLEDARKVFDI--SSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKD 185

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVI 144
           V SW ++ISGY +     E   LF  M + + NV     +  TVV  CA +  I      
Sbjct: 186 VVSWNAMISGYVETGNYKEALELFKEM-MMMTNVRPDESTMVTVVSACAQSDSIE----- 239

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                   L R+  + +    F    N  IV  NA+I  Y   G +  A ELF+ +  ++
Sbjct: 240 --------LGRHVHSWINDHGFAS--NLKIV--NALIDLYSKFGEVETACELFDGLWNKD 287

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V +WN +I  Y        A+ L   M +S   PN+ T  SIL +C  +    +   + +
Sbjct: 288 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 347

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFER-LEAKDVVSWTAMILAYSNHG 322
            +  + +  +T   +      D   +  D+++A+  F+  +  + + +W AMI  ++ HG
Sbjct: 348 YINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHG 407

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
                F +F+RM  +G +PD+ITFVG+LS CSH+G+++ GR  F  M+R Y   P+ EHY
Sbjct: 408 RANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHY 467

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
            C+ D+L  +G  KEA  +++ M P E D V+  +LL AC++HG++ + +   ++LI+++
Sbjct: 468 GCMIDLLGHSGLFKEAEEMINTM-PMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIE 526

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VKKVASFSQIEVKGKDHTLL 495
           P +SG+YVL +N++AA G W+E A++R  +  +   KKV   S IE+    H  +
Sbjct: 527 PGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFI 581



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 25/307 (8%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVS 124
           A  VFD I E N+  W ++  G+  +       +L+  M            P  LK+   
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 125 WTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                 G   +G + KL    ++   T++ +   +N   + AR+ F    ++D+V++ A+
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-LMFQSRFMPN 239
           I  YV  G +  A +LF+ +P ++V +WNAMI  Y   G    A++L   +M  +   P+
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221

Query: 240 ETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           E+T  +++++C   + +      H+     GF     +       Y  +      +V +A
Sbjct: 222 ESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFG-----EVETA 276

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F+ L  KDV+SW  +I  Y++     +   LF  ML+SG  P+++T + +L  C+H 
Sbjct: 277 CELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 336

Query: 357 GLVEKGR 363
           G ++ GR
Sbjct: 337 GAIDIGR 343



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 67/296 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------PESQ----- 55
           G ++ A KLFDE+   D VS  +MI+ ++   +  +A  LF+ M       P+       
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228

Query: 56  --------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N+   +A+ID Y K G V+ A ++FD ++  +V
Sbjct: 229 VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDV 288

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI GY       E   LF  M    +  N V+  +++  CAH G I   ++  W 
Sbjct: 289 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI---DIGRWI 345

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDAGNMAQASELFN-LMP 201
            +                ++    K +V        ++I  Y   G++  A ++F+  M 
Sbjct: 346 HV----------------YINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMS 389

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
            R++ TWNAMI  +A +G   AA  + + M  +   P++ T   +L++C   GML+
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLD 445


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 234/433 (54%), Gaps = 41/433 (9%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +++  T+LIS Y +   V   R++FD MP    N ++W  +V  C   G +         
Sbjct: 140 HLFVGTTLISMYGECGFVGFARKVFDEMPEP--NAIAWNAMVTACCRGGDM--------- 188

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                       K  RE F  MP +++++WN M+  Y  AG +  A E+F  MP ++  +
Sbjct: 189 ------------KGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVS 236

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAI 264
           W+ MI  +A NG    A      + +    PNET+ T +L++C   G LE   + H    
Sbjct: 237 WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILH---- 292

Query: 265 RLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHG 322
             GF +++ L +  + +    D +    +V  A+L FER+   +++VSWT+M+ A + HG
Sbjct: 293 --GFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHG 350

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
           HG +   +F +M +SG +PDEI F+ +L  CSHAGLVE+G + F+ M   Y  +P  EHY
Sbjct: 351 HGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHY 410

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
            C+ D+  RAGQ+++A   V +MP      ++   LLGAC +HGDV++A+ + ERL EL 
Sbjct: 411 GCMVDLYGRAGQLQKAYEFVCQMPI-PCTAIIWRTLLGACSMHGDVKLAEQVKERLSELD 469

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR-- 499
           P++S  +VL +N +A  G+W + A VR+ M E+R+ K   +S IEV    +T LA  +  
Sbjct: 470 PNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQY 529

Query: 500 ---EMGYVVLKEV 509
              E  Y  LKE+
Sbjct: 530 KITEEAYKKLKEI 542



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 34/265 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +G  G V  A K+FDEM +P+ ++  +M+T   R  D+     LF  MP   RN+++ 
Sbjct: 149 SMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMP--VRNLMSW 206

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + M+ GY KAG ++ AR++F E+   +  SW+++I G+      +E    F  +  K   
Sbjct: 207 NVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMR 266

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW-- 177
            N  S T V+  CA  G +   +++      +GL                      AW  
Sbjct: 267 PNETSLTGVLSACAQAGALEFGKILHGFIEKSGL----------------------AWIV 304

Query: 178 ---NAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
              NA++  Y   GN+  A  +F  +M +RN+ +W +M+   A +G    A+ + + M +
Sbjct: 305 SVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEE 364

Query: 234 SRFMPNETTCTSILTSCE--GMLEN 256
           S   P+E    S+L +C   G++E 
Sbjct: 365 SGIRPDEIAFISLLYACSHAGLVEQ 389


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/471 (33%), Positives = 255/471 (54%), Gaps = 35/471 (7%)

Query: 55   QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
            + ++   SA+ID Y K G++ +AR +FDEI   NV SWTS+I+GY +  Q D    LF  
Sbjct: 2047 ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLF-- 2104

Query: 115  MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
                 K+ +   T V    +N  +  + ++S  + C+ +    +T+    + V+   +  
Sbjct: 2105 -----KDFLEEETEVED-GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 174  IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            I   N ++ AY   G    + ++F+ M +++  +WN+MI  YA++G  G A+++ + M +
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 234  S---RFMPNETTCTSILTSCEGMLENMLAHALAIRLG---FEQ--ETSLTYKCTCHYVFW 285
                R+  N  T +++L +C        AHA A+R G    +Q  +  L Y         
Sbjct: 2219 HVGVRY--NAVTLSAVLLAC--------AHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 2268

Query: 286  DWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D   +   V  A+  F+R++ K+V SWTAM+  Y  HG   +   +F +M+++G KP+ I
Sbjct: 2269 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 2328

Query: 345  TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            TFV VL+ CSHAGLVE+G   FN M   Y  +P  EHY C+ D+  RAG + EA  ++ +
Sbjct: 2329 TFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKR 2388

Query: 405  MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
            M   + D VV G+LLGACR+H +V + +   ++L EL P + G YVL +N++A  G W +
Sbjct: 2389 M-KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 2447

Query: 465  FAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
              ++R  M+ R++ K   FS +E+KG+ H  L      P  EM Y  L+++
Sbjct: 2448 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKL 2498



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 38/363 (10%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           +I  Y   GR+  A  +F +I     ++W  +I         ++   L+  M        
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFV 167
               P  +K   ++ ++ LG   +G + K     +V     +     +   T+ A + F 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +M  +++V+W  +I+  +  G++ +A  +F+ +P +NV +W AMI+ Y RN     A++L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL-------AIRLGFEQETSLT---YK 277
              M      PNE T  S++ +C  M    L   +        I +G    T+L     K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C              +  A   FE +  K + +W +MI +   HG G +   LF+ M + 
Sbjct: 305 CG------------SIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV 352

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KPD ITF+GVL  C H   V++G   F  M++ YG  P  EHY C+ ++  R+  + E
Sbjct: 353 NVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDE 412

Query: 398 AMR 400
           A +
Sbjct: 413 AFK 415



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 19/197 (9%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           RN+V+ + +I G +  G + EAR++FDEI   NV SWT++I+GY + +Q +E   LF RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +    N  +  +++  C   G++         T+  G+   A+               
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGIL---------TLGRGIHDYAIKNCIE--------IG 291

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +    A+I  Y   G++  A E+F  MP++++ TWN+MI     +G    A+ L + M +
Sbjct: 292 VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMER 351

Query: 234 SRFMPNETTCTSILTSC 250
               P+  T   +L +C
Sbjct: 352 VNVKPDAITFIGVLCAC 368



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 83/371 (22%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------RNIVAE 61
            G++K+A  LFDE+   + VS  SMIT +++N     A  LF+   E +       N+  +
Sbjct: 2064 GQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLD 2123

Query: 62   S---------------------------------------AMIDGYVKAGRVDEARKVFD 82
            S                                        ++D Y K G+   ++KVFD
Sbjct: 2124 SVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFD 2183

Query: 83   EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIA 139
             + E +  SW S+I+ Y ++    E   +F  M   +    N V+ + V+L CAH G + 
Sbjct: 2184 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243

Query: 140  KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
              + I           + + K+  EY       ++    ++I  Y   G +  A + F+ 
Sbjct: 2244 AGKCI----------HDQVIKMDLEY-------NVCVGTSIIDMYCKCGRVEMAKKTFDR 2286

Query: 200  MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-- 255
            M ++NV +W AM+  Y  +G    A+ +   M ++   PN  T  S+L +C   G++E  
Sbjct: 2287 MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 2346

Query: 256  ----NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
                N + H   I  G E      Y C        +G    +N A    +R++ K D V 
Sbjct: 2347 WHWFNAMKHKYDIEPGIEH-----YGCMVDL----FGRAGCLNEAYNLIKRMKMKPDFVV 2397

Query: 311  WTAMILAYSNH 321
            W +++ A   H
Sbjct: 2398 WGSLLGACRIH 2408



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 40/261 (15%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y   G +A A  LF  +     +TWN +I     NG    A+ L   M       +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
           + T   ++ +C   L      + H   I+ GF  +           +KC  H  F    F
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCG-HTRFALKVF 183

Query: 290 QL--------------------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
           +                     D+  AR  F+ + +K+VVSWTAMI  Y  +    +   
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE----HYSCL 385
           LF RM      P+E T V ++  C+  G++  GR   +     Y  K   E      + L
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGVYLGTAL 298

Query: 386 ADILRRAGQVKEAMRVVSKMP 406
            D+  + G +K+A+ V   MP
Sbjct: 299 IDMYSKCGSIKDAIEVFETMP 319



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 128/322 (39%), Gaps = 65/322 (20%)

Query: 173  DIVAWNAMI----TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
            D + +N+++    +   D  N+A  +  +  + + NV +WN++I   AR G    A++  
Sbjct: 1946 DGITYNSILFGVPSGREDHSNLA--TWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF 2003

Query: 229  NLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            + + +   +P  ++    + SC  + +     ++H  A   GF  ET L        ++ 
Sbjct: 2004 SSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGF--ETDLFVSSALIDMYS 2061

Query: 286  DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP---- 341
              G    +  AR  F+ +  ++VVSWT+MI  Y  +        LF   L+  T+     
Sbjct: 2062 KCG---QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 2118

Query: 342  ----DEITFVGVLSDCS-----------HAGLVEKG------------------------ 362
                D +  V VLS CS           H  +V+KG                        
Sbjct: 2119 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178

Query: 363  RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALL 419
            +K F+ M            ++ +  +  ++G   EA+ V   M  H     + V L A+L
Sbjct: 2179 KKVFDWMEEKDDIS-----WNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL 2233

Query: 420  GACRLHGDVRMADYIGERLIEL 441
             AC   G +R    I +++I++
Sbjct: 2234 LACAHAGALRAGKCIHDQVIKM 2255



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 42/236 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++EA ++FDE+   + VS  +MI  ++RN    +A  LF+ M     NI      +  
Sbjct: 205 GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM--QAENIFPNEYTMVS 262

Query: 68  YVKA----GRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            +KA    G +   R + D       E  VY  T+LI  Y K   + +   +F+ MP K 
Sbjct: 263 LIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK- 321

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIV 175
                                  + +W +M T L  + + + A   F +M       D +
Sbjct: 322 ----------------------SLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAMK 226
            +  ++ A V   N+ +    F  M Q          +  M + YAR+     A K
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 225/441 (51%), Gaps = 28/441 (6%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  +    +A+ID Y K   + +A+KVFDE+   +V SW + ++   +  +VD  R +FD
Sbjct: 160 SAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFD 219

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            MP K                       + +SW TM  G  +    + A E F +MP ++
Sbjct: 220 EMPEK-----------------------DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRN 256

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+W+ +++AY   G+M  A  +F+ MP +N+ TW  M+   A+ G    A +L   M  
Sbjct: 257 VVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMD 316

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +    +     SIL +C       LA    I     Q         C+ +   +     V
Sbjct: 317 AAIELDVIAVVSILAACAE--SGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 374

Query: 294 NSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           N A   F+  +  KD+VSW  +I  ++ HG G +   LFA+M + G  PD +T + VLS 
Sbjct: 375 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 434

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+H GLVE+GR+ F  M   YG KP+ EHY C+ D+L R G +KEA+ ++ +M P E + 
Sbjct: 435 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRM-PWEPNE 493

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           V+ G+LL ACRLH +V  A+     L  LQPSS+G Y + +N++A  G+W + A+ R +M
Sbjct: 494 VIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQM 553

Query: 473 E-RRVKKVASFSQIEVKGKDH 492
           +    +K A  S IE+    H
Sbjct: 554 KGTGSQKTAGSSWIELNEAFH 574



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 138/263 (52%), Gaps = 23/263 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +A K+FDEM+  D VS  + +   +R  ++  A ++F  MPE  ++ V+ + M+DGY 
Sbjct: 180 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPE--KDTVSWNTMLDGYA 237

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           KAG  ++A ++F  +   NV SW++++S Y K   ++  R +FD+MP   KN+V+WT +V
Sbjct: 238 KAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMP--AKNLVTWTIMV 295

Query: 130 LGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREYFVQMP-N 171
             CA  GL+ +                 + V+S    C      A+ K    +  Q   +
Sbjct: 296 SACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLS 355

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +  +  NA++  +   G + +A  +F+  + ++++ +WN +I  +A +GP   A++L   
Sbjct: 356 RSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQ 415

Query: 231 MFQSRFMPNETTCTSILTSCEGM 253
           M Q  F P+  T  ++L++C  M
Sbjct: 416 MKQQGFHPDAVTLINVLSACTHM 438


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 228/451 (50%), Gaps = 48/451 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K G   +ARKVFDE+ E +V SW + ++   +  ++   R+LFD MP K   
Sbjct: 44  NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK--- 100

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               + +SW T+  G  +    + A E F +MP +++V+W+ M+
Sbjct: 101 --------------------DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMV 140

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y   G++  A  +F+ MP +N+ TW  M+   A+ G    A KL   M ++    +  
Sbjct: 141 SGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVA 200

Query: 242 TCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQL 291
              SIL +C   G L      H    +    + T +         KC C           
Sbjct: 201 AVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC----------- 249

Query: 292 DVNSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            VN A   F+     KD VSW ++I  ++ HGHG +   LFA+M + G  PD +T + VL
Sbjct: 250 -VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 308

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+H G V++GR+ F+ M R YG  P+ EHY C+ D+L R G +KEA+ ++  M P E 
Sbjct: 309 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSM-PWEP 367

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           + V+ G+LL ACRLH +V  A+     L +LQPS++G Y + +N++A  G+W + A+ R 
Sbjct: 368 NEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARM 427

Query: 471 KME-RRVKKVASFSQIEVKGKDHTLLAPMRE 500
           +M+    +K A  S +E+    H      R+
Sbjct: 428 QMKGTGSQKTAGSSWVELNETFHEFTVGDRK 458



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 137/266 (51%), Gaps = 23/266 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G   +A K+FDEM + D VS  + +   +R  +L     LF  MPE  ++ V+ + ++D
Sbjct: 53  NGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE--KDTVSWNTILD 110

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY KAG V+ A ++F  + E NV SW++++SGY K   ++  R +FD+MP   KN+V+WT
Sbjct: 111 GYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMP--SKNLVTWT 168

Query: 127 TVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREY--FVQMP 170
            +V  CA  GL+               +L+V +  ++      +    L +    +V+  
Sbjct: 169 IMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR 228

Query: 171 N--KDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           N  +     NA+I  +   G + +A  +F+    Q++  +WN++I  +A +G    A++L
Sbjct: 229 NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 288

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGM 253
              M Q  F P+  T  ++L++C  M
Sbjct: 289 FAQMKQQGFNPDAVTMINVLSACTHM 314



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 37/299 (12%)

Query: 169 MPNKDIVAWNAMITAYVDAGNM---AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           MP +D   ++ +I A   AG     A  S +  L    + +  NA+ID Y++NG    A 
Sbjct: 1   MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 226 KLLNLMFQSRFMPNETTCTSI-----LTSCEGMLENM--------------LAHALAIRL 266
           K+ + M +   +   T   ++     L     + + M                 A  +  
Sbjct: 61  KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120

Query: 267 GFEQETSLTYKCTCHYVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
            FE    +  +    +     G+  + D+  AR+ F+++ +K++V+WT M+ A +  G  
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM-SRAYGFKPRAEHY- 382
            +  +LFA+M ++  + D    V +L+ C+ +G +  G++    +  R  G   R+ H  
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLG---RSTHVC 237

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           + L D+  + G V  A   V      ++D V   +++G   +HG        G++ +EL
Sbjct: 238 NALIDMFCKCGCVNRA-DYVFDTETVQKDSVSWNSIIGGFAMHGH-------GDKALEL 288


>gi|302780000|ref|XP_002971775.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
 gi|300160907|gb|EFJ27524.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
          Length = 516

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 244/478 (51%), Gaps = 35/478 (7%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           Q   +  +  A +++  M +   VS + M+T +     L K  +LF +MPE  RN+++ +
Sbjct: 69  QASASSNLDLAQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPE--RNLISWT 126

Query: 63  AMIDGYVKAGRVDEA-RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           AM  GY + G + E+  ++F  + E +V+SWT++I+ Y +     + RR FD MP K  N
Sbjct: 127 AMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKARRCFDLMPHK--N 184

Query: 122 VVSWTTVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           VVSW+ +     AHNG +   ++                      F +MP++D+V+WN++
Sbjct: 185 VVSWSAMFQAAYAHNGHLESAKIA---------------------FERMPSRDVVSWNSI 223

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  +   G + +A +LF+LMP+ N   WN MI  +A++G    AM +  LM      P+ 
Sbjct: 224 IAFFSQKGKLEEAKDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRLMDLHGVSPDS 283

Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  +I  +C  +    E     A  +  G  Q++              +G       A 
Sbjct: 284 VTYIAIFDACSRIANAEEGSAFIASIVHPGILQDSVAVGNAALTM----YGRSGLAAGAW 339

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+++  +D VSW AM+ A++ +GHG     +F  M   G  PD ITFV VLS CSHAG
Sbjct: 340 SVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAG 399

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           L+ + R  F+ +S  YG  P  +HY CL D+L R+G++ EA  +V+ M P E ++    A
Sbjct: 400 LLHRARGYFHSISCDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSM-PFEPNYEAWMA 458

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           LLGACR HGDVR  +      ++    +   YVL ++++A  G  D+   +RK M R+
Sbjct: 459 LLGACRSHGDVRRGNRAAGFFVQAGVDAESPYVLLSHLYAEAGSKDDVLVIRKAMRRK 516



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 177/413 (42%), Gaps = 38/413 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I   ++   V E++ +FD + E +  +W SL+S Y +   ++E   LF  MP   ++ +
Sbjct: 5   IITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMP--ERDYM 62

Query: 124 SWTTVVLGCAHNGLIAKLEV---------ISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           SW T++   A + L    E+         +SW+ M T           R  F  MP +++
Sbjct: 63  SWNTLIQASASSNLDLAQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPERNL 122

Query: 175 VAWNAMITAYVDAGNMAQA-SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           ++W AM   Y   G + ++ SE+F+ MP+R+V++W AMI  Y        A +  +L   
Sbjct: 123 ISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKARRCFDL--- 179

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAI---RLGFEQETSLTYKCTCHYVFWDWGFQ 290
              MP++      + S   M +   AH   +   ++ FE+  S     + + +   +  +
Sbjct: 180 ---MPHKN-----VVSWSAMFQAAYAHNGHLESAKIAFERMPSRDV-VSWNSIIAFFSQK 230

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQVFRLFARMLKSGTKPDEITFV 347
             +  A+  F  +   +  +W  MI A++  GH      VFRL   M   G  PD +T++
Sbjct: 231 GKLEEAKDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRL---MDLHGVSPDSVTYI 287

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +   CS     E+G      +      +      +    +  R+G    A  V  +MP 
Sbjct: 288 AIFDACSRIANAEEGSAFIASIVHPGILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMPV 347

Query: 408 HERDHVVLGALLGAC--RLHGDVRMADYIGERLIELQPS-SSGAYVLSANVHA 457
             RD V   A+L A     HG+  +  ++   L  L P   +   VLSA  HA
Sbjct: 348 --RDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHA 398



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 47/309 (15%)

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           SW  + T   +N     ++  F +MP +D + WN++++AY   G++ +A++LF +MP+R+
Sbjct: 1   SWNIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERD 60

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT-SILTSC------------- 250
             +WN +I   A +      + L   ++   +MP  +  + S++ +              
Sbjct: 61  YMSWNTLIQASASSN-----LDLAQEIYH--YMPEHSHVSWSVMLTAYANFGHLDKTRSL 113

Query: 251 -EGMLENMLAHALAIRLGFEQETSL------TYKCTCHYVFWDWGFQL-------DVNSA 296
            + M E  L    A+  G+ Q   L       +        + W   +       D + A
Sbjct: 114 FDSMPERNLISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKA 173

Query: 297 RLAFERLEAKDVVSWTAMI-LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           R  F+ +  K+VVSW+AM   AY+++GH       F RM       D +++  +++  S 
Sbjct: 174 RRCFDLMPHKNVVSWSAMFQAAYAHNGHLESAKIAFERM----PSRDVVSWNSIIAFFSQ 229

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHV 413
            G +E+ +  F+LM      +P    ++ +     ++G +  AM V   M  H    D V
Sbjct: 230 KGKLEEAKDLFHLMP-----EPNTAAWNVMIQAHAQSGHLDLAMDVFRLMDLHGVSPDSV 284

Query: 414 VLGALLGAC 422
              A+  AC
Sbjct: 285 TYIAIFDAC 293



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 126/299 (42%), Gaps = 25/299 (8%)

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +WN +ITA +    + ++  LF+ MP+R+  TWN+++  YA+ G    A  L  +M +  
Sbjct: 1   SWNIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERD 60

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +M   +  T I  S    L+  LA  +   +      S +   T +  F        ++ 
Sbjct: 61  YM---SWNTLIQASASSNLD--LAQEIYHYMPEHSHVSWSVMLTAYANFG------HLDK 109

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
            R  F+ +  ++++SWTAM   Y+ +G+   +   ++ +  +  + D  ++  +++    
Sbjct: 110 TRSLFDSMPERNLISWTAMAAGYAQNGY---LQESYSEIFSTMPERDVFSWTAMITVYGE 166

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
                K R+ F+LM         A   +  A      G ++ A     +MP   RD V  
Sbjct: 167 FDDPHKARRCFDLMPHKNVVSWSAMFQAAYA----HNGHLESAKIAFERMP--SRDVVSW 220

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPS-SSGAYVLSANVHAARGEWDEFAQVRKKME 473
            +++      G +  A    + L  L P  ++ A+ +    HA  G  D    V + M+
Sbjct: 221 NSIIAFFSQKGKLEEA----KDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRLMD 275


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 244/453 (53%), Gaps = 22/453 (4%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++  ++ +I  YVK G +  A +VFD + + +  S+ S+I GY K  ++D  R +F
Sbjct: 157 EFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVF 216

Query: 113 DRMPLKLKNVVSWTTVVLGCAHN--------GLIAKL---EVISWTTMCTGLERNAMTKL 161
           D +PL+ +N++SW +++ G A +         L AK+   ++ISW +M  G  +    + 
Sbjct: 217 DCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMED 276

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A+  F +MPN+DIV+W  MI  Y   G +  A  LF+ MP+R+V  +NAM+  Y +NG  
Sbjct: 277 AQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYC 336

Query: 222 GAAMKLL-NLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYK 277
             A+ +   +     F+ +  T    L++    G ++  +A H     +GF  +  L   
Sbjct: 337 MEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVA 396

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y          + +A + FE ++ K V  W A+I   + HG G   F     M + 
Sbjct: 397 LIDMYSKCG-----SIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERM 451

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             +PD+ITF+G+L+ C HAGLV++G   F LM R +  +P+ +HY C+ DIL RAG ++E
Sbjct: 452 RVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEE 511

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A   V +M P E + V+  +LL AC+ H    +   + E L+ L   S  +YVL++N++A
Sbjct: 512 AKNFVEEM-PFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYA 570

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
             G+W++  +VR  M+++ +KK+   S IE++G
Sbjct: 571 GLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEG 603



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 177/407 (43%), Gaps = 66/407 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV-------- 59
           G +  A+++FD M + D VS  SMI  +++   +  A  +F  +P  +RN++        
Sbjct: 176 GCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRG 235

Query: 60  -AES-----------------------AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
            A+S                       +MIDG VK GR+++A+ +FD +   ++ SW ++
Sbjct: 236 YAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANM 295

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG--L 153
           I GY K  +VD  R LFD MP   ++VV++  ++ G   NG   +   I +     G  L
Sbjct: 296 IDGYAKNGRVDIARSLFDEMP--ERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFL 353

Query: 154 ERNAMTKLAREYFVQMPNKDI-VAWN----------------AMITAYVDAGNMAQASEL 196
             NA   +A     Q+ + D  VA +                A+I  Y   G++  A  +
Sbjct: 354 LDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMV 413

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGML 254
           F  + +++V  WNA+I   A +G    A   L  M + R  P++ T   +L +C   G++
Sbjct: 414 FENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLV 473

Query: 255 -ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL--EAKDVVSW 311
            E M+   L  R+   +     Y C    +    G    +  A+   E +  E  DV+ W
Sbjct: 474 KEGMMCFELMRRVHKVEPKLQHYGCMVDIL----GRAGHIEEAKNFVEEMPFEPNDVI-W 528

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            +++ A   H   F V +  A  L     P   ++  VL+   +AGL
Sbjct: 529 RSLLSACKTH-ESFNVGQPVAENLMRLDSPSPSSY--VLASNMYAGL 572



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 47/250 (18%)

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENMLAHAL 262
           + WNA+I  Y+       AM L++LM ++    ++ T + +L +C   G++ E M  H L
Sbjct: 93  FLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGL 152

Query: 263 AIRLGFEQE-------TSLTYKCTC----HYVF--------WDWGFQLD-------VNSA 296
             +L F  +        S   KC C      VF          +   +D       ++ A
Sbjct: 153 LKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLA 212

Query: 297 RLAFE--RLEAKDVVSWTAMILAYSNHGHGFQV-FRLFARMLKSGTKPDEITFVGVLSDC 353
           R+ F+   LE ++++SW ++I  Y+    G  V ++LFA+M     + D I++  ++  C
Sbjct: 213 RVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKM----PERDLISWNSMIDGC 268

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAE--HYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
              G +E  +  F+ M       P  +   ++ + D   + G+V  A  +  +MP  ERD
Sbjct: 269 VKCGRMEDAQGLFDRM-------PNRDIVSWANMIDGYAKNGRVDIARSLFDEMP--ERD 319

Query: 412 HVVLGALLGA 421
            V   A++G 
Sbjct: 320 VVAYNAMMGG 329



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD---VNSARLAFER 302
           +L  C+ + +    HA  +  GF + T LT K     +   +   L    +  AR  F R
Sbjct: 21  LLKKCKRLSDINQIHARLLTTGFIKNTFLTTK-----IILSFSTSLHAPLIEFARFIFFR 75

Query: 303 LEAKDVVS-----------WTAMILAYSNHGHG-FQVFRLFARMLKSGTKPDEITFVGVL 350
             A +              W A+I  YS HGH   +   L + ML++G   D+ T   VL
Sbjct: 76  HHAFEFDEKEEEEEKDPFLWNAIIKTYS-HGHDPKEAMWLVSLMLENGAFADKFTLSLVL 134

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             CS  GLV++G +   L+ +   F       +CL     + G +  A +V  +MP  +R
Sbjct: 135 KACSRVGLVKEGMQIHGLLKK-LEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMP--KR 191

Query: 411 DHVVLGALLGACRLHGDVRMA 431
           D V   +++      G + +A
Sbjct: 192 DSVSYNSMIDGYVKGGRIDLA 212


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 244/457 (53%), Gaps = 36/457 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-P 116
           +   +A+I  Y   G++  A+K+FD + + ++ SW +LI GY +  +  E  RLFD M  
Sbjct: 151 LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 210

Query: 117 LKLK-NVVSWTTVVLGCAHNG-------LIA-------KLEVISWTTMCTGLERNAMTKL 161
             +K + V+   ++L C+H G       ++        +++V    T+     R ++ +L
Sbjct: 211 ANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAEL 270

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A+  F +M  ++IV+WNA++  +   GN+  A +LF+ MP+R+V +W +MI  Y++    
Sbjct: 271 AQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 330

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQE-----TS 273
             A+KL   M  ++  P++ T  S+L++C   G L+   A H    R G + +     + 
Sbjct: 331 SDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSL 390

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +   C C  V            A   F R++ KD VSWT++I   + +G       LF++
Sbjct: 391 IDMYCKCGMV----------EKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQ 440

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML+ G +P   TFVG+L  C+HAGLV KG + F  M   +G  P  +HY C+ D+L R+G
Sbjct: 441 MLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSG 500

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            + +A   + KMP    D VV   LL AC+LHG+V +A+   +RL+EL P  SG YVL +
Sbjct: 501 NIDKAYEFIKKMPI-VPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLS 559

Query: 454 NVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
           N +A    WD+  ++R+ ME   V+K +  S IEV G
Sbjct: 560 NTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDG 596



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 29/242 (11%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           ++I ++ R      A+ +F  M E  RNIV+ +A++ G+ K G +  ARK+FD + + +V
Sbjct: 257 TLIDMYGRRSLAELAQGVFDRMRE--RNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDV 314

Query: 90  YSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I+GY +A Q  +  +LF + M  K+K + V+  +V+  CAH G   KL+V  W 
Sbjct: 315 ISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG---KLDV-GW- 369

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                    A+    R + VQ    DI   N++I  Y   G + +A E+F+ M  ++  +
Sbjct: 370 ---------AVHHYIRRHGVQ---ADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVS 417

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W ++I   A NG   +A+ L + M +    P   T   IL +C        AHA  +  G
Sbjct: 418 WTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLAC--------AHAGLVNKG 469

Query: 268 FE 269
            E
Sbjct: 470 LE 471



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 61/245 (24%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------ 54
            G +  A KLFD M + D +S  SMIT + +      A  LF+ M      P+       
Sbjct: 296 VGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASV 355

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    Q +I   +++ID Y K G V++A +VF  + + + 
Sbjct: 356 LSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDS 415

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAK-LEV 143
            SWTS+ISG       +    LF +M   L+  V     ++  ++L CAH GL+ K LE 
Sbjct: 416 VSWTSVISGLAVNGFANSALDLFSQM---LREGVQPTHGTFVGILLACAHAGLVNKGLEY 472

Query: 144 ISWTTMCTG--------------LERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
                   G              L R+     A E+  +MP   D+V W  +++A    G
Sbjct: 473 FESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHG 532

Query: 189 NMAQA 193
           N+  A
Sbjct: 533 NVVLA 537



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 8/172 (4%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+ +A  +FN +    +  WN MI   +++     A+ +   M       N  T   +  
Sbjct: 65  NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFK 124

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C     ++     H  A++LGFE     +Y    + +   +     +  A+  F+ +  
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFE-----SYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 179

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
           +D+VSW  +I  YS +    +V RLF  M  +  K D +T V ++  CSH G
Sbjct: 180 RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 43/164 (26%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A  +FD M + + VS  +++    +  +L  A  LF  MP  +R++++ ++MI GY +A 
Sbjct: 271 AQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMP--KRDVISWTSMITGYSQAS 328

Query: 73  RVDEARKVFDEI---------------------------------------YEGNVYSWT 93
           +  +A K+F E+                                        + ++Y   
Sbjct: 329 QFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGN 388

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL 137
           SLI  Y K   V++   +F RM  K K+ VSWT+V+ G A NG 
Sbjct: 389 SLIDMYCKCGMVEKALEVFHRM--KDKDSVSWTSVISGLAVNGF 430


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 244/456 (53%), Gaps = 22/456 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K   +   R LFD MP
Sbjct: 130 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMP 189

Query: 117 LKLKNVVSWTTVVLGCAHNG--------LIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A           L A++   ++ISW ++  G  ++   + A++ 
Sbjct: 190 KEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDL 249

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + +A  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 250 FYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEAL 309

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S   P+ETT   +L++   +    L+ A+ + L   E++  L  K     +
Sbjct: 310 EIFSDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAMDMHLYIVEKQFFLGGKLGVALI 367

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FER+E K +  W AMI   + HG G   F +   + +   KP
Sbjct: 368 DMYSKCG---SIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKP 424

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVG+L+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 425 DDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 484

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 485 IEEMPMEPND-VIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGM 543

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W +  +VR  M ER ++KV   S IE+ G+ H    
Sbjct: 544 WKDARRVRTMMKERELQKVPGCSWIELDGRVHEFFV 579



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 194/432 (44%), Gaps = 71/432 (16%)

Query: 8   GKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G +  A +LFD M +   + +S  SMI+ + +  D +  A  LF  MPE  +++++ +++
Sbjct: 176 GLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPE--KDLISWNSL 233

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +F  +   +V +W ++I GY K   V + + LFD+MP   ++VV+
Sbjct: 234 IDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP--HRDVVA 291

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LE+ S            TT+   L  +A+ +L R     +  +
Sbjct: 292 YNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVL--SAIAQLGRLSKAMDMHL 349

Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K          A+I  Y   G++ QA  +F  +  +++  WNAMI   A +G   +
Sbjct: 350 YIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGES 409

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
           A  +L  + +    P++ T   IL +C   G+++  L     +R   + E  L +     
Sbjct: 410 AFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQH----- 464

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                +G  +D+ S   + E   AK+++    M                         +P
Sbjct: 465 -----YGCMVDILSRSGSIEL--AKNLIEEMPM-------------------------EP 492

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           +++ +   L+ CSH    E G      +    G+ P +  Y  L+++    G  K+A RV
Sbjct: 493 NDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSS--YVLLSNMYASFGMWKDARRV 550

Query: 402 VSKMPPHERDHV 413
            + M   E   V
Sbjct: 551 RTMMKERELQKV 562


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 240/467 (51%), Gaps = 30/467 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q  +   S ++D Y K G +++A ++F+EI E N+  + ++I+G  + R + E  +LFD 
Sbjct: 170 QSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDN 229

Query: 115 MPLKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNA 157
           MP K  + +SWTT++ G   NGL                 + +    S  T C G     
Sbjct: 230 MPEK--DSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALD 287

Query: 158 MTKLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             K    Y ++   +D I   +A++  Y    N+  A  +F  M  +NV +W AM+  Y 
Sbjct: 288 EGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYG 347

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETS 273
           +NG    A+++   M ++   P++ T  S+++SC  +    E    H  A+  G      
Sbjct: 348 QNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGL----- 402

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           + +    + +   +G    +  A   F  ++ +D VSWTA++  Y+  G   +   LF  
Sbjct: 403 ICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFET 462

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML  G  PD +TFVGVLS CS AGLVEKG   F  M + +   P  +HY+C+ D+L RAG
Sbjct: 463 MLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAG 522

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           +++EA   +++M P   D +    LL +CRL+G++ +  +  E L +L+P +  +Y+L +
Sbjct: 523 RLEEAKNFINQM-PFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLS 581

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           +++AA+G+WD+ A++RK M E  VKK    S I+ K K H   A  R
Sbjct: 582 SIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDR 628



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 196/432 (45%), Gaps = 40/432 (9%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           ++   ++ P+     ++I  + +  DL  A  +F  +P  Q N+ + + ++  Y K G +
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP--QPNLFSWNTLLSAYSKLGYL 87

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----PLKLKNVVSWTTVV- 129
            + ++VFD +   +V SW SL+SGY     + E  R+++ M     + L  +   T ++ 
Sbjct: 88  QDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLIL 147

Query: 130 --------LGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAW 177
                   LG   +G I K    S+  + + L     +      A   F ++P K+IV +
Sbjct: 148 SSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVY 207

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N MIT  +    + +A +LF+ MP+++  +W  +I    +NG    A+     M    F 
Sbjct: 208 NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFC 267

Query: 238 PNETTCTSILTSCEGML---ENMLAHALAIRLGFEQE-----TSLTYKCTCHYVFWDWGF 289
            ++ T  S+LT+C G L   E    HA  IR  ++         L   C C         
Sbjct: 268 MDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCR-------- 319

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +V  A   F ++  K+V+SWTAM++ Y  +G+  +  R+F  M ++   PD+ T   V
Sbjct: 320 --NVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S C++   +E+G + F+  + A G        + L  +  + G ++ A ++  +M    
Sbjct: 378 ISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI-- 434

Query: 410 RDHVVLGALLGA 421
           RD V   AL+  
Sbjct: 435 RDEVSWTALVSG 446



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 75/314 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG + +A ++F+E+ + + V   +MIT  LR   + +AE LF  MPE  ++ ++ + +I 
Sbjct: 186 TGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE--KDSISWTTIIT 243

Query: 67  GYVKAGRVDEARKVFDEI---------------------------------------YEG 87
           G  + G   EA   F E+                                       Y+ 
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD 303

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL------ 141
           N++  ++L+  Y K R V     +F +M  + KNV+SWT +++G   NG   +       
Sbjct: 304 NIFVGSALLDMYCKCRNVKYAEAVFRKM--RHKNVISWTAMLVGYGQNGYSEEAVRIFCD 361

Query: 142 --------------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW----NAMITA 183
                          VIS       LE  A      ++  Q     ++ +    NA+IT 
Sbjct: 362 MQRNEIHPDDFTLGSVISSCANLASLEEGA------QFHGQALASGLICFVTVSNALITL 415

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G++  A +LF+ M  R+  +W A++  YA+ G     + L   M     +P+  T 
Sbjct: 416 YGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTF 475

Query: 244 TSILTSCE--GMLE 255
             +L++C   G++E
Sbjct: 476 VGVLSACSRAGLVE 489



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 121/323 (37%), Gaps = 74/323 (22%)

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           C    R  + KL       + N +   +N +I  Y   G++  A  +F+ +PQ N+++WN
Sbjct: 16  CEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWN 75

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT--SILTSCEG---MLENMLAHALAI 264
            ++  Y++ G     ++ +  +F S  MPN    +  S+L+   G   + E++  + + +
Sbjct: 76  TLLSAYSKLG----YLQDMQRVFDS--MPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 265 RLGFEQETSLTYKC---------------TCHYVFWDWGFQ---------LD-------V 293
           + G      +T+                   H   + +G+Q         +D       +
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 294 NSARLAFERLEAKDVV-------------------------------SWTAMILAYSNHG 322
           N A   FE +  K++V                               SWT +I   + +G
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNG 249

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              +    F  M   G   D+ TF  VL+ C     +++G++    + R   ++      
Sbjct: 250 LFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRT-DYQDNIFVG 308

Query: 383 SCLADILRRAGQVKEAMRVVSKM 405
           S L D+  +   VK A  V  KM
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKM 331



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 15/152 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G ++ A +LF EM   D VS  ++++ + +     +  +LF  M      IV +  
Sbjct: 416 YGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETML--AHGIVPDGV 473

Query: 64  MIDGYV----KAGRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDR 114
              G +    +AG V++    F+ + + +  +     +T +I    +A +++E +   ++
Sbjct: 474 TFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQ 533

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           MP    + + W T++  C  NG    LE+  W
Sbjct: 534 MPFS-PDAIGWATLLSSCRLNG---NLEIGKW 561


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/462 (31%), Positives = 234/462 (50%), Gaps = 30/462 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    S ++  Y K G + +A++VFDE+   NV  + ++I+G  + + V+E RRLF+ M 
Sbjct: 174 NAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVM- 232

Query: 117 LKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMT 159
              ++ ++WTT+V G   NGL                 I +    S  T C  L      
Sbjct: 233 -TDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQG 291

Query: 160 KLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K    Y ++    D +   +A++  Y    ++  A   F  M  +N+ +W A+I  Y +N
Sbjct: 292 KQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQN 351

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLT 275
           G    A+++ + M +    P++ T  S+++SC  +    E    H LA+  G     +++
Sbjct: 352 GCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                 Y     G    +  A   F+ +   D VSWTA++  Y+  G   +   LF +ML
Sbjct: 412 NALVTLY-----GKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKML 466

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
               KPD +TF+GVLS CS AG VEKG   F+ M + +G  P  +HY+C+ D+  R+G++
Sbjct: 467 AKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRL 526

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           KEA   + +MP H  D +  G LL ACRL GD+ +  +  E L+E+ P +  +YVL  ++
Sbjct: 527 KEAEEFIKQMPMHP-DAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSM 585

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           HA +G W++ AQ+R+ M +R+VKK    S I+ K K H   A
Sbjct: 586 HATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSA 627



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 186/456 (40%), Gaps = 89/456 (19%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           L    ++ +P +  ++  V LR    P    L              + ++  Y KAGR  
Sbjct: 12  LLSAAARTEPHAAGALHCVILRTLPHPPPTHLL-------------NHLLTAYGKAGRHA 58

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
            AR+VFD     N++++ +L+S    AR +D+   LF  M    ++ VS+  V+ G +  
Sbjct: 59  RARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASM--AQRDTVSYNAVIAGFSGG 116

Query: 136 GLIAKLEVISWTTMCTG-------LERNAMT---------KLAREY-------------- 165
           G  A+   +  T +  G       +  +AM           L R++              
Sbjct: 117 GAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAF 176

Query: 166 ---------------------FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                                F +M  K++V +N MIT  +    + +A  LF +M  R+
Sbjct: 177 VGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRD 236

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHA 261
             TW  M+  + +NG E  A+     M       ++ T  SILT+C     + +    HA
Sbjct: 237 CITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296

Query: 262 LAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
             IR  ++           +  KC              +  A  AF R+  K+++SWTA+
Sbjct: 297 YIIRTHYDDNVFVGSALVDMYSKCR------------SIKPAETAFRRMSCKNIISWTAL 344

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I+ Y  +G   +  R+F+ M + G  PD+ T   V+S C++   +E+G + F+ ++   G
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSG 403

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
                   + L  +  + G +++A R+  +M  H++
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 65/303 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A ++FDEM   + V   +MIT  LR   + +A  LF  M  + R+ +  + M+ G
Sbjct: 189 GLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVM--TDRDCITWTTMVTG 246

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
           + + G   +A   F  +                                       Y+ N
Sbjct: 247 FTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDN 306

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL 141
           V+  ++L+  Y K R +      F RM    KN++SWT +++G   NG       + +++
Sbjct: 307 VFVGSALVDMYSKCRSIKPAETAFRRM--SCKNIISWTALIVGYGQNGCSEEAVRVFSEM 364

Query: 142 E-------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
           +             VIS       LE  A         V      I   NA++T Y   G
Sbjct: 365 QRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLA--LVSGLMHYITVSNALVTLYGKCG 422

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++  A  LF+ M   +  +W A++  YA+ G     + L   M      P+  T   +L+
Sbjct: 423 SIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLS 482

Query: 249 SCE 251
           +C 
Sbjct: 483 ACS 485



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 157/407 (38%), Gaps = 95/407 (23%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE----- 83
           ++++ ++ +   +  AE  FR M  S +NI++ +A+I GY + G  +EA +VF E     
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRM--SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 84  --------------------IYEGNVYSWTSLISG--------------YFKARQVDEGR 109
                               + EG  +   +L+SG              Y K   +++  
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAH 428

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           RLFD M                          + +SWT + TG  +    K   + F +M
Sbjct: 429 RLFDEMLFH-----------------------DQVSWTALVTGYAQFGRAKETIDLFEKM 465

Query: 170 PNKDI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGP 220
             KD+    V +  +++A   AG + +    F+ M + +        +  MID Y+R+G 
Sbjct: 466 LAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGR 525

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYK 277
              A + +    Q    P+     ++L++C   G +E    A    + +  +   S    
Sbjct: 526 LKEAEEFIK---QMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLL 582

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT-----AMILAYSNHGHGF------Q 326
           C+ H    +W  Q+      +   +++ +   SW        I +  +  H F      +
Sbjct: 583 CSMHATKGNWN-QVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEK 641

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV----EKGRKTFNLM 369
           +  L ++ML+ G KPD  + +  ++D     +V    EK    F LM
Sbjct: 642 LEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLM 688



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 89/209 (42%), Gaps = 26/209 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAE 61
           +G  G +++A +LFDEM   D VS  +++T + +     +   LF  M   + + + V  
Sbjct: 418 YGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTF 477

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVY-----SWTSLISGYFKARQVDEGRRLFDRMP 116
             ++    +AG V++    F  + + +        +T +I  Y ++ ++ E      +MP
Sbjct: 478 IGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMP 537

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           +   + + W T++  C   G    +E+  W               A E  +++  ++  +
Sbjct: 538 MH-PDAIGWGTLLSACRLRG---DMEIGQW---------------AAENLLEIDPQNPAS 578

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV 205
           +  + + +   GN  Q ++L   M  R V
Sbjct: 579 YVLLCSMHATKGNWNQVAQLRRGMRDRQV 607


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 229/465 (49%), Gaps = 47/465 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +++I  Y K G +    +VF  I   +V SW S+I+ + +    +E   LF  M  +   
Sbjct: 175 NSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVK 234

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN----------AMTKL-------- 161
            N ++   V+  CA     +  E   W    + +ERN          AM  +        
Sbjct: 235 PNGITMVGVLSACAKK---SDFEFGRWVH--SYIERNRIGESLTLSNAMLDMYTKCGSVE 289

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A+  F +MP KDIV+W  M+  Y   G    A  +F+ MP +++  WNA+I  Y + G 
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349

Query: 221 EGAAMKLLN-LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTY 276
              A++L + L       P+E T  S L++C  +    L    H    + G +    LT 
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTT 409

Query: 277 K-----CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                 C C           D+  A + F  +E KDV  W+AMI   + HGHG     LF
Sbjct: 410 SLIDMYCKCG----------DLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALF 459

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
           ++M +   KP+ +TF  +L  CSH GLVE+GR  FN M   YG  P  +HY+C+ DIL R
Sbjct: 460 SKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGR 519

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG ++EA+ ++ KM P      V GALLGAC +H +V +A+    +LIEL+P + GAYVL
Sbjct: 520 AGLLEEAVELIEKM-PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVL 578

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            +N++A  G+WD  + +RK M +  +KK    S IEV G  H  L
Sbjct: 579 LSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFL 623



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 169/378 (44%), Gaps = 37/378 (9%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLK 120
           +D A++VFD+I   N+Y+W +LI  Y  +    +   +F RM             P  +K
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 121 NVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
                  +  G A +G++ K+    +V    ++     +     L    FV +P +D+V+
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMF 232
           WN+MITA+V  G   +A ELF  M  +NV     T   ++   A+         + + + 
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE 264

Query: 233 QSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           ++R   + T   ++L   T C G +E+  A  L  ++  +   S T     +    ++  
Sbjct: 265 RNRIGESLTLSNAMLDMYTKC-GSVED--AKRLFDKMPEKDIVSWTTMLVGYAKIGEY-- 319

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVG 348
               ++A+  F+ +  +D+ +W A+I AY   G   +   LF  +  S T KPDE+T V 
Sbjct: 320 ----DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVS 375

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            LS C+  G ++ G    ++  +  G K      + L D+  + G +++A+ V   +   
Sbjct: 376 TLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV--E 432

Query: 409 ERDHVVLGALLGACRLHG 426
            +D  V  A++    +HG
Sbjct: 433 RKDVFVWSAMIAGLAMHG 450



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 137/283 (48%), Gaps = 38/283 (13%)

Query: 3   QFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI 58
           Q GC    +EA +LF EM     +P+ ++   +++   +  D      +   +   +RN 
Sbjct: 214 QGGCP---EEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI---ERNR 267

Query: 59  VAES-----AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           + ES     AM+D Y K G V++A+++FD++ E ++ SWT+++ GY K  + D  + +FD
Sbjct: 268 IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFD 327

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAR-EYFVQMPN 171
            MP   +++ +W  ++      G   + LE+     +    + + +T ++      Q+  
Sbjct: 328 AMP--NQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGA 385

Query: 172 KDIVAW-----------------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            D+  W                  ++I  Y   G++ +A  +F+ + +++V+ W+AMI  
Sbjct: 386 MDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAG 445

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            A +G    A+ L + M + +  PN  T T+IL +C   G++E
Sbjct: 446 LAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVE 488


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 226/443 (51%), Gaps = 48/443 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K G   +ARKVFDE+ E +V SW + ++   +  ++   R+LFD MP K   
Sbjct: 167 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK--- 223

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               + +SW T+  G  +    + A E F +MP +++V+W+ M+
Sbjct: 224 --------------------DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMV 263

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y   G++  A  +F+ MP +N+ TW  M+   A+ G    A KL   M ++    +  
Sbjct: 264 SGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVA 323

Query: 242 TCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQL 291
              SIL +C   G L      H    +    + T +         KC C           
Sbjct: 324 AVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC----------- 372

Query: 292 DVNSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            VN A   F+     KD VSW ++I  ++ HGHG +   LFA+M + G  PD +T + VL
Sbjct: 373 -VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 431

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+H G V++GR+ F+ M R YG  P+ EHY C+ D+L R G +KEA+ ++  M P E 
Sbjct: 432 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSM-PWEP 490

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           + V+ G+LL ACRLH +V  A+     L +LQPS++G Y + +N++A  G+W + A+ R 
Sbjct: 491 NEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARM 550

Query: 471 KME-RRVKKVASFSQIEVKGKDH 492
           +M+    +K A  S +E+    H
Sbjct: 551 QMKGTGSQKTAGSSWVELNETFH 573



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 23/265 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   +A K+FDEM + D VS  + +   +R  +L     LF  MPE  ++ V+ + ++DG
Sbjct: 177 GGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE--KDTVSWNTILDG 234

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y KAG V+ A ++F  + E NV SW++++SGY K   ++  R +FD+MP   KN+V+WT 
Sbjct: 235 YTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMP--SKNLVTWTI 292

Query: 128 VVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREY--FVQMPN 171
           +V  CA  GL+               +L+V +  ++      +    L +    +V+  N
Sbjct: 293 MVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRN 352

Query: 172 --KDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
             +     NA+I  +   G + +A  +F+    Q++  +WN++I  +A +G    A++L 
Sbjct: 353 LGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELF 412

Query: 229 NLMFQSRFMPNETTCTSILTSCEGM 253
             M Q  F P+  T  ++L++C  M
Sbjct: 413 AQMKQQGFNPDAVTMINVLSACTHM 437


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/505 (31%), Positives = 264/505 (52%), Gaps = 58/505 (11%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
            S+I+++ +N  +  A  +F     S R++V+ +AMI GY   G +D+A+K+FDEI   +
Sbjct: 117 TSLISMYAQNGIVEDAHKVFDT--SSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKD 174

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDR-MPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SW ++ISGY +  +  E   LF+  M + +K +  +  TV+  C H+G +        
Sbjct: 175 VVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNV-------- 226

Query: 147 TTMCTGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                        +L R+    + N     ++   NA+I  Y   G M +A  LF  +  
Sbjct: 227 -------------ELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL 262
           ++V +WN +I  YA       A+ +   M +    PN+ T  SIL +C        AH  
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPAC--------AHLG 325

Query: 263 AIRLG------FEQE-----TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
           AI +G       +++     T+ + + +   ++   G   ++ +A   F+ +  K + S 
Sbjct: 326 AIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCG---NIEAANQVFDTILNKSLSSC 382

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            AMI  ++ HG     F L +RM K G +PD+ITFVG+LS CSHAGL + GRK F  M+ 
Sbjct: 383 NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTL 442

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            Y  +P+ EHY C+ D+L R+G  KEA  +++ M   E D V+ G+LL AC++H ++ + 
Sbjct: 443 DYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSM-TMEPDGVIWGSLLKACKIHKNLELG 501

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           + I ++L++++P + G+YVL +N++A    WD+ A+VR  + ++ +KKV   S IE+   
Sbjct: 502 ELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSM 561

Query: 491 DHTLLA-----PMREMGYVVLKEVD 510
            H  L      P  +  Y +L+E+D
Sbjct: 562 VHEFLIGDKFHPQNKEIYKMLEEID 586



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 142/308 (46%), Gaps = 63/308 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G V++A K+FD  S  D VS  +MIT +    ++ KA+ +F  +P   +++V+ 
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIP--IKDVVSW 178

Query: 62  SAMIDGYVKAGRVDEARKVFDEI--------------------YEGNV------YSW--- 92
           +AMI GY + GR  EA ++F+E+                    + GNV      +SW   
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN 238

Query: 93  ----------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
                      +LI  Y K  +++    LF+   L+ K+V+SW T++ G A+     +  
Sbjct: 239 HGFGSNLKLVNALIDLYSKCGEMERAHGLFE--GLQYKDVISWNTLIGGYAYINHHKEAL 296

Query: 143 VISWTTMCTGLERNAMTKLA----------------REYFVQMPNKDIVAWNAMITAYVD 186
           ++    +  G   N +T L+                   ++    K I+   ++ T+ +D
Sbjct: 297 LVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLID 356

Query: 187 ----AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
                GN+  A+++F+ +  +++ + NAMI  +A +G   AA  LL+ M +    P++ T
Sbjct: 357 MYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDIT 416

Query: 243 CTSILTSC 250
              +L++C
Sbjct: 417 FVGLLSAC 424



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 30/238 (12%)

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  +F  + + N  +WN MI  +A +    +A+ L   M      PN  T   +  S
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 250 C-------EG--MLENMLAHALAIRL-------------GFEQETSLTYKCTCH-----Y 282
           C       EG  +   +L + L + L             G  ++    +  + H     Y
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 283 VFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                G+  + +++ A+  F+ +  KDVVSW AMI  Y+  G   +   LF  M+K   K
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
           PDE T   VLS C+H+G VE GR+  + +   +GF    +  + L D+  + G+++ A
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDN-HGFGSNLKLVNALIDLYSKCGEMERA 264


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 244/456 (53%), Gaps = 22/456 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K   ++    LFD MP
Sbjct: 121 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMP 180

Query: 117 LKLKNVVSWTTVVLGCAHNG--------LIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A           L A++   ++ISW +M  G  ++   + A++ 
Sbjct: 181 REMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDL 240

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  +P +D+V W  MI  Y   G + QA  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 241 FDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEAL 300

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S   P+ETT   +L++   +    L+ A+ + L   E++  L  K     +
Sbjct: 301 EIFSDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAMDMHLYIVEKQFLLGGKLGVALI 358

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FE +E K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 359 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKP 415

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 416 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 475

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 476 IEEMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGM 534

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W +  +VR  M ER+++K+   S IE+ G  H    
Sbjct: 535 WKDVRRVRTMMKERKIEKIPGCSWIELDGXVHEFFV 570



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 171/387 (44%), Gaps = 67/387 (17%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV----- 59
           GC G    A ++FD M Q D VS  SMI  +++   +  A  LF  MP   +N++     
Sbjct: 136 GCLGF---ARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSL 192

Query: 60  ------------------AE---------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                             AE         ++MIDGYVK GR+++A+ +FD +   +V +W
Sbjct: 193 ISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTW 252

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVIS------ 145
            ++I GY K   V + + LFD+MP   ++VV++ +++ G   N   +  LE+ S      
Sbjct: 253 ATMIDGYAKLGFVHQAKTLFDQMP--HRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKES 310

Query: 146 -----WTTMCTGLERNAMTKLAR-----EYFVQMPNKDIVAWN----AMITAYVDAGNMA 191
                 TT+   L  +A+ +L R     +  + +  K  +       A+I  Y   G++ 
Sbjct: 311 HLSPDETTLVIVL--SAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQ 368

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC- 250
            A  +F  +  +++  WNAMI   A +G   +A  +L  + +    P++ T   +L +C 
Sbjct: 369 HAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACS 428

Query: 251 -EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
             G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV
Sbjct: 429 HSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN--LIEEMPIEPNDV 486

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARML 335
           + W   + A S+H   F+   L A+ L
Sbjct: 487 I-WRTFLTACSHHKE-FETGELVAKHL 511


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 230/441 (52%), Gaps = 30/441 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + ++D Y K G +D A  VFD +    V +WTSLI+ Y +    DE  RLF  M  +   
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            ++ + TTV+  CA NG +   + +                  RE  +Q    +I   NA
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVH--------------NYIRENDMQ---SNIFVCNA 139

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G+M  A+ +F  MP +++ +WN MI  Y++N     A+ L   M      P+
Sbjct: 140 LMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-EMKPD 198

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            TT   IL +C  +         H   +R GF  +  +       YV    G  +    A
Sbjct: 199 GTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYV--KCGVPV---LA 253

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           RL F+ +  KD+++WT MI  Y  HG G      F  M ++G +PDE++F+ +L  CSH+
Sbjct: 254 RLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHS 313

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL+++G + FN+M      KP+ EHY+C+ D+L R+G++  A + +  MP  E D  + G
Sbjct: 314 GLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPI-EPDATIWG 372

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL  CR+H DV++A+ + E + EL+P ++G YVL AN +A   +W+E  ++R+K+ RR 
Sbjct: 373 ALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRG 432

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           +KK    S IEVK K H  LA
Sbjct: 433 LKKNPGCSWIEVKSKVHIFLA 453



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 26/257 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G   EA +LF EM +    PD  +  +++     N  L   + +   + E+  Q NI   
Sbjct: 78  GLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVC 137

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++D Y K G +++A  VF E+   ++ SW ++I GY K    +E   LF  M L++K 
Sbjct: 138 NALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKP 197

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           +  +   ++  CA           S  ++  G E +    + R  F      D    NA+
Sbjct: 198 DGTTLACILPACA-----------SLASLDRGKEVHG--HILRNGFFS----DQQVANAL 240

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  YV  G    A  LF+++P +++ TW  MI  Y  +G    A+   N M Q+   P+E
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 241 TTCTSILTSC--EGMLE 255
            +  SIL +C   G+L+
Sbjct: 301 VSFISILYACSHSGLLD 317


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 255/492 (51%), Gaps = 62/492 (12%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           ++C++++ V   N  +     + R + E         ++I  Y + G++ +ARKVFDEI 
Sbjct: 135 IACSNLLAV--ENGRMGHCSVIRRGLDEDGH---VSHSLITMYARCGKMGDARKVFDEIS 189

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEV 143
           + ++ SW S+ISGY K R   E   LF  M       N +S  +V+  C   G +  L++
Sbjct: 190 QKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGAC---GELGDLKL 246

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +W       E     K+   YF+          +A+I  Y   G++  A  +F+ M ++
Sbjct: 247 GTWVE-----EFVVENKMTLNYFMG---------SALIHMYGKCGDLVSARRIFDSMKKK 292

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           +  TWNAMI  YA+NG    A+KL   M  S   P++ T   IL++C        A   A
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSAC--------ASIGA 344

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDV----------------NSARLAFERLEAKD 307
           + LG + E   + +          GFQ DV                ++A   F  +  K+
Sbjct: 345 LDLGKQVEIYASER----------GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKN 394

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKT 365
            VSW AMI A + HG   +   LF  M+  G    P++ITFVGVLS C HAGLV++GR+ 
Sbjct: 395 EVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRL 454

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F++MS ++G  P+ EHYSC+ D+  RAG ++EA   V  M P + D V+LGALLGAC+  
Sbjct: 455 FHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTM-PEKPDEVILGALLGACQKR 513

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQ 484
            ++ +++ + + L+EL+PS+SG YV+S+ ++A    WD+ A++R  M+++ V K    S 
Sbjct: 514 KNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSW 573

Query: 485 IEVKGKDHTLLA 496
           I++  + H   A
Sbjct: 574 IDINSQLHEFHA 585



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 28/269 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           GK+ +A K+FDE+SQ D VS  SMI+ + +     +A  LFR M E+  Q N ++  +++
Sbjct: 176 GKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVL 235

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +     V + + E     N +  ++LI  Y K   +   RR+FD M  K K+
Sbjct: 236 GACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSM--KKKD 293

Query: 122 VVSWTTVVLGCAHNGLIA-----------------KLEVISWTTMCTGLERNAMTKLARE 164
            V+W  ++ G A NG+                   ++ +I   + C  +    + K    
Sbjct: 294 KVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEI 353

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +     D+    A++  Y   G++  A  +F  MP++N  +WNAMI   A +G    
Sbjct: 354 YASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQE 413

Query: 224 AMKLLNLMFQ--SRFMPNETTCTSILTSC 250
           A+ L   M        PN+ T   +L++C
Sbjct: 414 ALALFKSMMNEGGTVSPNDITFVGVLSAC 442



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 35/261 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           +G  G +  A ++FD M + D V+  +MIT + +N    +A  LF+ M  S    + +  
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332

Query: 62  SAMIDGYVKAGRVDEARKVFDEIY------EGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             ++      G +D  ++V  EIY      + +VY  T+L+  Y K   +D   R+F  M
Sbjct: 333 IGILSACASIGALDLGKQV--EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P   KN VSW  ++   A +G   +   +  + M  G   +             PN   +
Sbjct: 391 P--KKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVS-------------PND--I 433

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +  +++A V AG + +   LF++M         +  ++ M+D ++R G    A   +  
Sbjct: 434 TFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMT 493

Query: 231 MFQSRFMPNETTCTSILTSCE 251
           M +    P+E    ++L +C+
Sbjct: 494 MPEK---PDEVILGALLGACQ 511


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 249/486 (51%), Gaps = 53/486 (10%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGN 88
           +I ++L+   L  A  +F  MP  QR+ V+ ++MIDGYVK G ++ AR++FD +   + N
Sbjct: 134 LIGLYLKCGCLGFARQVFDRMP--QRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKN 191

Query: 89  VYSWTSLISGYFKARQ-VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           + SW  +ISGY ++   V+   +LFD MP K                       ++ISW 
Sbjct: 192 LISWNCMISGYTQSEDGVNVASKLFDEMPEK-----------------------DLISWN 228

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           ++  G  ++   + A+  F  MP KD+V W  MI  Y   G + QA +LF+ MPQR+V  
Sbjct: 229 SLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVA 288

Query: 208 WNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCE--GMLENMLAHALAI 264
           +N+M+  Y +N     A+ + N M  +S   P+ETT   +L++    G L   +   L I
Sbjct: 289 YNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYI 348

Query: 265 -----RLGFEQETSL--TY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
                RLG +   +L  TY KC              +  +   FE +E K +  W AMI 
Sbjct: 349 MDNKFRLGGKLGVALIDTYSKCG------------SIQKSMRVFEEIENKSIDHWNAMIG 396

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + HG G   F +  ++ K   KPD+ITF+GVL+ CSH+GLV++G   F LM R +  +
Sbjct: 397 GLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIE 456

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
           P+ +HY C+ DIL R+G ++ A  ++ +MP    D V+    L AC  H +    + + +
Sbjct: 457 PKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPND-VIWRTFLTACSNHKEFETGELVAK 515

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            L      +  ++VL +N++A+ G W E  +VR  M ER+++K+   S IE+ G  H   
Sbjct: 516 HLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFF 575

Query: 496 APMREM 501
               E+
Sbjct: 576 VDTMEL 581



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 174/367 (47%), Gaps = 35/367 (9%)

Query: 8   GKVKEATKLFDEM--SQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G ++ A +LFD M   + + +S   MI+ + ++ D +  A  LF  MPE  +++++ +++
Sbjct: 173 GLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPE--KDLISWNSL 230

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK  R+++A+ +FD +   +V +W ++I GY K   V + ++LFD MP   ++VV+
Sbjct: 231 IDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMP--QRDVVA 288

Query: 125 WTTVVLGCAHN-------GLIAKLEVISW-----TTMCTGLERNA----MTKLAREYFVQ 168
           + +++ G   N       G+   +E  S      TT+   L   A    ++K    +   
Sbjct: 289 YNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYI 348

Query: 169 MPNKDIVAWN---AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           M NK  +      A+I  Y   G++ ++  +F  +  +++  WNAMI   A +G   +A 
Sbjct: 349 MDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAF 408

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTCHY 282
            +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C    
Sbjct: 409 DMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDI 468

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSGTK 340
           +      +L  N   +    +E  DV+ W   + A SNH   F+   L A+   L+ G  
Sbjct: 469 LSRSGSIELAKN--LIEEMPIEPNDVI-WRTFLTACSNHKE-FETGELVAKHLFLQGGYN 524

Query: 341 PDEITFV 347
           P     +
Sbjct: 525 PSSFVLL 531



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NML 258
           + + + WNA+I  ++       A+ L  LM ++    ++ + + +L +C   G ++  M 
Sbjct: 55  EEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQ 114

Query: 259 AHALAIRLGFEQE-------TSLTYKCTC----HYVF--------WDWGFQLD------- 292
            H    + G   +         L  KC C      VF          +   +D       
Sbjct: 115 VHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGL 174

Query: 293 VNSARLAFERL--EAKDVVSWTAMILAYSNHGHGFQV-FRLFARMLKSGTKPDEITFVGV 349
           + SAR  F+ +  E K+++SW  MI  Y+    G  V  +LF  M     + D I++  +
Sbjct: 175 IESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEM----PEKDLISWNSL 230

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +        +E  +  F+LM R          ++ + D   + G V +A ++  +MP  +
Sbjct: 231 IDGYVKHRRIEDAKSLFDLMPRK-----DVVTWATMIDGYAKLGFVHQAKKLFDEMP--Q 283

Query: 410 RDHVVLGALLGA 421
           RD V   +++  
Sbjct: 284 RDVVAYNSMMAG 295


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 221/435 (50%), Gaps = 34/435 (7%)

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           +  TSLIS Y K   +D  R+LFD  P   K  V + +++ G A N  +  + V+     
Sbjct: 46  FVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMR 105

Query: 150 CTGLERNAMTKLAREYFVQMPNK------------------DIVAWNAMITAYVDAGNMA 191
             G+E N +T L       +P                    D    N ++T YV +G + 
Sbjct: 106 ELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEID 165

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
              +LF+ MP++ + TWNAMI+ YA+NG     ++L   M    F P+  T   +L+SC 
Sbjct: 166 CGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSC- 224

Query: 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD------WGFQLDVNSARLAFERLEA 305
                  AH  A+ +G E E  +         F +      +    ++  AR  F+ +  
Sbjct: 225 -------AHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPV 277

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           K VVSWTA+I  Y  HG G     LF  M++ G KPD   FV VLS CSHAGL  KG   
Sbjct: 278 KSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDY 337

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F +M R YG +P AEHYSC+ D+L RAG++ EA  ++  M     D  + GALLGAC++H
Sbjct: 338 FGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRA-DGALWGALLGACKIH 396

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            +V +A+   E++IEL+P+++G YVL +NV+   G  +   +VR  M +R++KK    S 
Sbjct: 397 RNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSY 456

Query: 485 IEVKGKDHTLLAPMR 499
           +E KG+ H   A  R
Sbjct: 457 VEFKGRVHLFFAGDR 471



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 19/191 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + ++  YVK+G +D  RK+FDE+    + +W ++I+GY +    +    L+  M  K   
Sbjct: 152 NCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFC 211

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + ++   V+  CAH G ++  + +       G   N                     NA
Sbjct: 212 PDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLN-----------------NA 254

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   GN+ +A ++F+ MP ++V +W A+I  Y  +G    A+ L + M +    P+
Sbjct: 255 LVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPD 314

Query: 240 ETTCTSILTSC 250
            T   S+L++C
Sbjct: 315 GTAFVSVLSAC 325



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVA 60
            G      +L+ EM      PDP++   +++       L   + + R M       N   
Sbjct: 192 NGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFL 251

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PL 117
            +A+++ Y + G + +AR +FD +   +V SWT++I GY    Q +    LFD M    +
Sbjct: 252 NNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGI 311

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           K  +  ++ +V+  C+H GL  K           GL+   +  + R+Y ++ P  +   +
Sbjct: 312 K-PDGTAFVSVLSACSHAGLTNK-----------GLDYFGV--MERKYGLR-PGAE--HY 354

Query: 178 NAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
           + M+     AG + +A EL   M  R +   W A++
Sbjct: 355 SCMVDLLGRAGRLNEARELIESMQVRADGALWGALL 390


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 249/471 (52%), Gaps = 34/471 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   SA+ID Y K G++  AR +FDEI   N+ +WTSLI+GY +     E   +F  
Sbjct: 114 ESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVF-- 171

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
                K  +   +   G      +  + +IS  + C+ +   A+++      +++  +K 
Sbjct: 172 -----KEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKV 226

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N ++ AY   G ++ + ++F+ M +++V +WN+MI  YA+NG    A ++ + M +
Sbjct: 227 MGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLK 286

Query: 234 SRFMP-NETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYK-----CTCHYVF 284
           +     NE T +++L +C  EG L   M  H   I++G+     +        C C    
Sbjct: 287 AGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCG--- 343

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                      AR AF+ ++ K+V SWTAMI  Y  HG   +   +F +M+ +G KP+ I
Sbjct: 344 -------QAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF+ VL+ CSHAG +E+G + FN MS  Y  +P  EHY C+ D+L RAG +KEA  ++  
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M    RD V+ G+LL ACR+H DV +A+     L +L PS+ G YVL AN++A  G W +
Sbjct: 457 MKV-RRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKD 515

Query: 465 FAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
             ++R  + +R + K   +S +E+KG+ H  L      P  E  Y  L+E+
Sbjct: 516 VERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEEL 566



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 158/373 (42%), Gaps = 53/373 (14%)

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNG 136
           K FD     +VYSW SLI+   +     E  R F  M  L +K N  ++   +  C+   
Sbjct: 40  KYFDRT---DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCS--- 93

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                            + N+  +  ++  V     D+   +A+I  Y   G ++ A  L
Sbjct: 94  --------------ALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVL 139

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-LMFQSRFMPNETTCT--------SIL 247
           F+ +P+RN+ TW ++I  Y +N     A+ +    +F+      E   T        S+L
Sbjct: 140 FDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVL 199

Query: 248 TSCEGMLENMLA---HALAIRLGFE-----QETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           ++C  +    ++   H +AI++G +     + T L     C           +V+ +R  
Sbjct: 200 SACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCG----------EVSLSRKV 249

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGL 358
           F+ +  KDVVSW +MI  Y+ +G     F +F  MLK+ G K +E+T   +L  C+H G 
Sbjct: 250 FDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGA 309

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           +  G    + + +  G+       + + D+  + GQ + A      M   E++     A+
Sbjct: 310 LRVGMCLHDQVIKM-GYVNNVIMATSIIDMYCKCGQAEMARNAFDGMK--EKNVRSWTAM 366

Query: 419 LGACRLHGDVRMA 431
           +    +HG  R A
Sbjct: 367 IAGYGMHGFAREA 379



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 76/321 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------------- 48
           GK+  A  LFDE+ + + V+  S+IT +++N D  +A  +F                   
Sbjct: 131 GKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSV 190

Query: 49  -----------------RAMPESQRNIV----------AESAMIDGYVKAGRVDEARKVF 81
                            +A+ E    +            E+ ++D Y K G V  +RKVF
Sbjct: 191 DSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVF 250

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAHNGL 137
           D++ E +V SW S+I+ Y +     +   +F  M LK      N V+ +T++L CAH G 
Sbjct: 251 DDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGM-LKAGGGKYNEVTLSTLLLACAHEGA 309

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           +          MC     + + K+    +V     +++   ++I  Y   G    A   F
Sbjct: 310 LR-------VGMCL---HDQVIKMG---YVN----NVIMATSIIDMYCKCGQAEMARNAF 352

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           + M ++NV +W AMI  Y  +G    A+ +   M  +   PN  T  S+L +C   G LE
Sbjct: 353 DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLE 412

Query: 256 ------NMLAHALAIRLGFEQ 270
                 N ++H   +  G E 
Sbjct: 413 EGWRWFNAMSHEYNVEPGVEH 433



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 18/181 (9%)

Query: 187 AGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           A      + LFN    R +V++WN++I   AR G    +++  + M +    PN +T   
Sbjct: 28  AATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPC 87

Query: 246 ILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
            + SC  + +      AH  A+  GFE +  ++      Y          +++AR+ F+ 
Sbjct: 88  AIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG-----KLSNARVLFDE 142

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARML---------KSGTKPDEITFVGVLSDC 353
           +  +++V+WT++I  Y  +    +   +F   L         + GT  D +  + VLS C
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 354 S 354
           S
Sbjct: 203 S 203



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 63/273 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G+V  + K+FD+M++ D VS  SMI V+ +N     A  +F  M ++             
Sbjct: 241 GEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTL 300

Query: 56  --------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N++  +++ID Y K G+ + AR  FD + E NV
Sbjct: 301 LLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNV 360

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI--------- 138
            SWT++I+GY       E   +F +M       N +++ +V+  C+H G +         
Sbjct: 361 RSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNA 420

Query: 139 ------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAY-----VD 186
                  +  V  +  M   L R    K A      M   +D V W +++ A      V+
Sbjct: 421 MSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVE 480

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
              ++ A ELF L P  N   +  + + YA  G
Sbjct: 481 LAEIS-ARELFKLDPS-NCGYYVLLANIYADAG 511



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           + N   L  +  +  DV SW ++I   +  G   +  R F+ M K   KP+  TF   + 
Sbjct: 31  NTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIK 90

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            CS    +  G++     +  +GF+      S L D+  + G++  A  +  ++P
Sbjct: 91  SCSALFDLNSGKQAHQ-QALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP 144


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 255/492 (51%), Gaps = 62/492 (12%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           ++C++++ V   N  +     + R + E         ++I  Y + G++ +ARKVFDEI 
Sbjct: 135 IACSNLLAV--ENGRMGHCSVIRRGLDEDGH---VSHSLITMYARCGKMGDARKVFDEIS 189

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEV 143
           + ++ SW S+ISGY K R   E   LF  M       N +S  +V+  C   G +  L++
Sbjct: 190 QKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGAC---GELGDLKL 246

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +W       E     K+   YF+          +A+I  Y   G++  A  +F+ M ++
Sbjct: 247 GTWVE-----EFVVENKMTLNYFMG---------SALIHMYGKCGDLVSARRIFDSMKKK 292

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           +  TWNAMI  YA+NG    A+KL   M  S   P++ T   IL++C        A   A
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSAC--------ASIGA 344

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDV----------------NSARLAFERLEAKD 307
           + LG + E   + +          GFQ DV                ++A   F  +  K+
Sbjct: 345 LDLGKQVEIYASER----------GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKN 394

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKT 365
            VSW AMI A + HG   +   LF  M+  G    P++ITFVGVLS C HAGLV++GR+ 
Sbjct: 395 EVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRL 454

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F++MS ++G  P+ EHYSC+ D+  RAG ++EA   V  M P + D V+LGALLGAC+  
Sbjct: 455 FHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTM-PEKPDEVILGALLGACQKR 513

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQ 484
            ++ +++ + + L+EL+PS+SG YV+S+ ++A    WD+ A++R  M+++ V K    S 
Sbjct: 514 KNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSW 573

Query: 485 IEVKGKDHTLLA 496
           I++  + H   A
Sbjct: 574 IDINSQLHEFHA 585



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 28/269 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           GK+ +A K+FDE+SQ D VS  SMI+ + +     +A  LFR M E+  Q N ++  +++
Sbjct: 176 GKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVL 235

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +     V + + E     N +  ++LI  Y K   +   RR+FD M  K K+
Sbjct: 236 GACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSM--KKKD 293

Query: 122 VVSWTTVVLGCAHNGLIA-----------------KLEVISWTTMCTGLERNAMTKLARE 164
            V+W  ++ G A NG+                   ++ +I   + C  +    + K    
Sbjct: 294 KVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEI 353

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +     D+    A++  Y   G++  A  +F  MP +N  +WNAMI   A +G    
Sbjct: 354 YASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQE 413

Query: 224 AMKLLNLMFQ--SRFMPNETTCTSILTSC 250
           A+ L   M        PN+ T   +L++C
Sbjct: 414 ALALFKSMMNEGGTVSPNDITFVGVLSAC 442



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 35/261 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           +G  G +  A ++FD M + D V+  +MIT + +N    +A  LF+ M  S    + +  
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332

Query: 62  SAMIDGYVKAGRVDEARKVFDEIY------EGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             ++      G +D  ++V  EIY      + +VY  T+L+  Y K   +D   R+F  M
Sbjct: 333 IGILSACASIGALDLGKQV--EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P   KN VSW  ++   A +G   +   +  + M  G   +             PN   +
Sbjct: 391 P--NKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVS-------------PND--I 433

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +  +++A V AG + +   LF++M         +  ++ M+D ++R G    A   +  
Sbjct: 434 TFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMT 493

Query: 231 MFQSRFMPNETTCTSILTSCE 251
           M +    P+E    ++L +C+
Sbjct: 494 MPEK---PDEVILGALLGACQ 511


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 235/438 (53%), Gaps = 40/438 (9%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++V  ++ +D Y K   +  ARKVF E+ E NV SWT+LI  Y K+ +++E +R+FD M
Sbjct: 140 KDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLM 199

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P +  N+ +W  +V     +GL+   ++++                AR+ F +MP +DI+
Sbjct: 200 PER--NLGTWNALV-----DGLVKSGDLVN----------------ARKLFDEMPKRDII 236

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           ++ +MI  Y   G+M  A +LF      +V  W+A+I  YA+NG    A K+ + M    
Sbjct: 237 SYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKN 296

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             P+E     ++++C      M    L  ++      S+  K + HYV       +D+N+
Sbjct: 297 VKPDEFIMVGLMSACS----QMGCFELCEKVDSYLHQSMN-KFSSHYVIPAL---IDMNA 348

Query: 296 -------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                  A   FE +  +D+VS+ +M+   + HG G +  RLF +M+  G  PDE+ F  
Sbjct: 349 KCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTV 408

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  CS + LVE+G + F LM + Y      +HYSC+ ++L R G++KEA  ++  M P 
Sbjct: 409 ILKVCSQSRLVEEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSM-PF 467

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E      G+LLG C LHG+  +A+ +  +L EL+P S+G+YVL +N++AA   W + A +
Sbjct: 468 EAHASAWGSLLGGCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHL 527

Query: 469 RKKM-ERRVKKVASFSQI 485
           R KM E  +KK+   S I
Sbjct: 528 RDKMNENGIKKICGRSWI 545



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 169/380 (44%), Gaps = 64/380 (16%)

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLKNVVSWT 126
           VF+ +     Y W  LI GY       E   L  RM             PL +K   +  
Sbjct: 62  VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121

Query: 127 TVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
              +G   +GL+ ++    +V+  T+      +      AR+ F +MP +++V+W A+I 
Sbjct: 122 EFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIV 181

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           AYV +G + +A  +F+LMP+RN+ TWNA++D   ++G    A KL + M +   +    +
Sbjct: 182 AYVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDII----S 237

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
            TS++                   G+ +                     D+ SAR  FE 
Sbjct: 238 YTSMID------------------GYAKGG-------------------DMVSARDLFEN 260

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
               DV +W+A+IL Y+ +G   + F++F+ M     KPDE   VG++S CS  G  E  
Sbjct: 261 ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELC 320

Query: 363 RKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            K  + + ++      + HY    L D+  + G +  A ++  +MP  +RD V   +++ 
Sbjct: 321 EKVDSYLHQS--MNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMP--QRDLVSYCSMME 376

Query: 421 ACRLHGDVRMADYIGERLIE 440
              +HG    A  + E++++
Sbjct: 377 GMAIHGCGSEAVRLFEKMVD 396



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 142/267 (53%), Gaps = 30/267 (11%)

Query: 8   GKVKE---ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GK K+   A K+F EM + + VS  ++I  ++++ +L +A+ +F  MPE  RN+   +A+
Sbjct: 153 GKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLMPE--RNLGTWNAL 210

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +DG VK+G +  ARK+FDE+ + ++ S+TS+I GY K   +   R LF+    +  +V +
Sbjct: 211 VDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFENA--RGVDVRA 268

Query: 125 WTTVVLGCAHNG-----------LIAK------LEVISWTTMCTGLERNAMTKLAREYFV 167
           W+ ++LG A NG           + AK        ++   + C+ +    + +    Y  
Sbjct: 269 WSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLH 328

Query: 168 QMPNKDIVAWNAMITAYVD----AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Q  NK   + + +I A +D     G+M +A++LF  MPQR++ ++ +M++  A +G    
Sbjct: 329 QSMNK--FSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSE 386

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A++L   M     +P+E   T IL  C
Sbjct: 387 AVRLFEKMVDEGIVPDEVAFTVILKVC 413



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 15/242 (6%)

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M Q    P+  +  ++L  C+  +     HA  IR G EQ+ +L                
Sbjct: 1   MIQRLSHPSLLSLETLLKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSS-------S 53

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGV 349
             ++ +   FER+       W  +I  YSN    F+   L  RM+++G  +PDE TF  V
Sbjct: 54  SSLSYSSSVFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLV 113

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  CS+      G     L+ R  GF       +   D   +   +  A +V  +MP  E
Sbjct: 114 MKVCSNNAEFRVGSTVHGLVLRI-GFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMP--E 170

Query: 410 RDHVVLGALLGACRLHGDV----RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           R+ V   AL+ A    G++    RM D + ER +    +     V S ++  AR  +DE 
Sbjct: 171 RNVVSWTALIVAYVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEM 230

Query: 466 AQ 467
            +
Sbjct: 231 PK 232


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 266/537 (49%), Gaps = 69/537 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPES------------ 54
           G +  A ++FD M  PD V   S+I+ F RN +    AEAL + + +             
Sbjct: 163 GSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTIL 222

Query: 55  ----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                  +++ + +A+ID Y + G    A+ VFD ++  NV SW
Sbjct: 223 TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 282

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            S++  Y +  +++E  ++F  M  +    N  + + V+  C   GL  +L        C
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLH-------C 335

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           + ++ + +T             DI   NA+++ Y   G + +   + N +   ++ +W  
Sbjct: 336 SAIKHDLIT-------------DIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 382

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLG 267
            I    +NG    A+ LL  M    F PN    +S+L+SC     + + M  H LA++LG
Sbjct: 383 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 442

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            + E      CT + +   +     + SARLAF+ +   DV SW ++I  ++ HG   + 
Sbjct: 443 CDSEI-----CTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKA 497

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F++M  +G KPD+ TF+GVL  C+H+G+VE+G   F LM   Y F P   HY+C+ D
Sbjct: 498 LEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMID 557

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L R G+  EA+R+++ M P E D ++   LL +C+LH ++ +     +RL+EL    S 
Sbjct: 558 MLGRNGRFDEALRMINDM-PFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSA 616

Query: 448 AYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGY 503
           +YVL +N++A  GEW++  +VR++M E  VKK A  S IE+  + HT  +  R+M +
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFAS--RDMSH 671



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 27/306 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V E   ++  VK+GR+ +A  +FD +   NV +WTS++SGY +  + +    +F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
                 N  +    ++ CA  G +   E +    +  G   +                  
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGD------------------ 148

Query: 175 VAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            AW  + +I  Y   G++  A E+F+ M   +V  + ++I  + RNG    A + L  M 
Sbjct: 149 -AWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQML 207

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           +    PNE T T+ILT+C  +L   +   L  ++G   ++  +      +   +  F+L 
Sbjct: 208 KQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKL- 266

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              A+  F+ L  K+VVSW +M+  Y   G   +  ++F  M+  G  P+E     VL  
Sbjct: 267 ---AKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA 323

Query: 353 CSHAGL 358
           C   GL
Sbjct: 324 CGSIGL 329



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 190/449 (42%), Gaps = 36/449 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES---QRNIVAESA 63
           +G++ +A  LFD M + + V+  S+++ + RN     A A+F  M ES     +    +A
Sbjct: 61  SGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAA 120

Query: 64  MID----GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           ++     G ++AG    +  V    + G+ +  + LI  Y +   +   + +FDRM    
Sbjct: 121 LVACADLGALRAGEQVHSLAV-RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM--DS 177

Query: 120 KNVVSWTTVVLGCAHNG--------LIAKLEV------ISWTTMCTGLERNAMTKLAREY 165
            +VV +T+++     NG        LI  L+        + TT+ T   R  + +    Y
Sbjct: 178 PDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR-VLGQQIHGY 236

Query: 166 FVQ---MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            ++   + ++ + +  A+I  Y   G    A  +F+ +  +NV +W +M+  Y R+G   
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 296

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A+++   M      PNE   + +L +C  +      H  AI+     +  ++     + 
Sbjct: 297 EALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVS-----NA 351

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
           +   +G    V        ++E  D+VSWT  I A   +G G +   L  +M   G  P+
Sbjct: 352 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 411

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
              F  VLS C+    +++G + F+ ++   G        + L ++  + GQ+  A    
Sbjct: 412 GYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA 431
             M  H  D     +L+     HGD   A
Sbjct: 471 DVM--HTHDVTSWNSLIHGHAQHGDANKA 497



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+V     +   V +G +A A +LF+ MP++NV  W +++  Y RNG   AA+ +   
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFAD 104

Query: 231 MFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +S   PN+  C + L +C     +      H+LA+R GF  +  +    +C    +  
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG---SCLIEMYSR 161

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
              L   +A+  F+R+++ DVV +T++I A+  +G          +MLK G KP+E T  
Sbjct: 162 CGSLP--AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMT 219

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            +L+ C        G++    + +  G + ++ + S  L D   R G+ K A  V   +
Sbjct: 220 TILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSL 274


>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 592

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 246/458 (53%), Gaps = 36/458 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G++ +A ++F+ M + + VSC +++  FL N D+  A   FR M E  R+  + 
Sbjct: 142 SGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMGE--RDSASL 199

Query: 62  SAMIDGYVKAGRVDEARKVFDEI-YEGN-----VYSWTSLISGYFKARQVDEGRRLFD-- 113
           S ++ G V+ G++D A ++  E   EG+     VY++ +LI+GY +   V+E R +FD  
Sbjct: 200 SGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGV 259

Query: 114 ----------RMPLKLKNVVSWTTVVLGCAHNGLIA----------KLEVISWTTMCTGL 153
                     +  LK +NVVSW ++++     G +           + +  SW T+  G 
Sbjct: 260 MSDQGEGNEGKRRLK-RNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNTVIGGY 318

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
            +    + A + F++MP  D+++WN++I+ +   G++ +  E F  MP +N+ +WN++I 
Sbjct: 319 VQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIA 378

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS 273
            Y +N     A++L + M      P+  T +SIL+   G+++  L   +   +       
Sbjct: 379 GYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVVPD 438

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFA 332
           L    +   ++   G   ++  AR  F  ++  KDV++W AMI  Y+ HG   Q   LF 
Sbjct: 439 LPINNSLITMYSRCG---EIGDARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALELFE 495

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           RM     +P  ITF+ VL+ C+HAGLVE+G++ FN M   YG +PR EH++ L DIL R 
Sbjct: 496 RMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHFASLVDILGRQ 555

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           GQ++EAM ++  MP  + D  V GALLGACR+H +V +
Sbjct: 556 GQLQEAMDLIVNMPV-KPDKAVWGALLGACRVHSNVDL 592



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 226/520 (43%), Gaps = 118/520 (22%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG++  A  LFD  +  + V+  SMIT +++  ++ KA  LF  MP   R+IV+ + +I 
Sbjct: 51  TGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMP--LRDIVSWNLIIS 108

Query: 67  GYV--KAGR-VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           GY   +  R V+E RK+FD + + +  SW ++ISGY K  ++D+   +F+ MP   +NVV
Sbjct: 109 GYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMP--ERNVV 166

Query: 124 SWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-- 171
           S   VV G   NG +           + +  S + + +GL RN    +A E  V+  N  
Sbjct: 167 SCNAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEG 226

Query: 172 ------------------------------------------------KDIVAWNAMITA 183
                                                           +++V+WN+M+  
Sbjct: 227 DEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMC 286

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           YV AG++  A ELF+ M +R+  +WN +I  Y + G    A KL    F    +P+  + 
Sbjct: 287 YVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKL----FLEMPIPDVLSW 342

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
            SI++                  GF Q                     D+   +  FE +
Sbjct: 343 NSIIS------------------GFSQIG-------------------DLKRVKEFFENM 365

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE--K 361
             K+++SW ++I  Y  +        LF++M   G +PD  T   +LS  +  GLV+   
Sbjct: 366 PHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVST--GLVDLYL 423

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           G++    +++     P     + L  +  R G++ +A  V ++M  + +D +   A++G 
Sbjct: 424 GKQIHQFVTKT--VVPDLPINNSLITMYSRCGEIGDARHVFNEMKLY-KDVITWNAMIGG 480

Query: 422 CRLHGDVRMADYIGERL--IELQPSS-SGAYVLSANVHAA 458
              HG    A  + ER+  +++QP+  +   VL+A  HA 
Sbjct: 481 YAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAG 520



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 152/358 (42%), Gaps = 52/358 (14%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I   ++ GR+  AR +FD     N  +W S+I+GY + R++ + R+LFD MPL+  ++VS
Sbjct: 45  ISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLR--DIVS 102

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           W  ++ G                  C G   +   +  R+ F  MP +D V+WN +I+ Y
Sbjct: 103 WNLIISGYFS---------------CRG---SRFVEEGRKLFDIMPQRDCVSWNTVISGY 144

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G M QA E+F  MP+RNV + NA+++ +  NG   +A+     M        E    
Sbjct: 145 AKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKM-------GERDSA 197

Query: 245 SILTSCEGMLENM---LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           S+     G++ N    +A  + +  G E +         + +   +G +  V  AR  F+
Sbjct: 198 SLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFD 257

Query: 302 -------------RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                        R   ++VVSW +M++ Y   G       LF RM++     D  ++  
Sbjct: 258 GVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRMVER----DACSWNT 313

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V+      G +E+  K F  M       P    ++ +     + G +K        MP
Sbjct: 314 VIGGYVQIGDMEEASKLFLEMP-----IPDVLSWNSIISGFSQIGDLKRVKEFFENMP 366


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 242/457 (52%), Gaps = 32/457 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   +A+I+ Y   G +  A+KVFDE+ E ++ SW SL+ GY + ++  E   +F+ 
Sbjct: 109 ESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEA 168

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIA--------------KLEVISWTTMCTGLERNAM 158
           M +     + V+   VVL C   G                 +++V    T+     R  +
Sbjct: 169 MRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGL 228

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
             LAR  F QM  +++V+WNAMI  Y  AGN+  A ELF+ M QR+V +W  MI  Y++ 
Sbjct: 229 VHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQA 288

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETS 273
           G    A++L   M +S+  P+E T  S+L++C        AH  ++ +G     + Q+  
Sbjct: 289 GQFTEALRLFKEMMESKVKPDEITVASVLSAC--------AHTGSLDVGEAAHDYIQKYD 340

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARL-AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           +           D   +  V    L  F+ +  KD VSWT++I   + +G        F+
Sbjct: 341 VKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFS 400

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           RML+   +P    FVG+L  C+HAGLV+KG + F  M + YG KP  +HY C+ D+L R+
Sbjct: 401 RMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRS 460

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G ++ A   + +MP    D V+   LL A ++HG++ +A+   ++L+EL PS+SG YVLS
Sbjct: 461 GNLQRAFEFIKEMPVTP-DVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLS 519

Query: 453 ANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVK 488
           +N +A    W++  ++R+ ME+  V+K +  S IE++
Sbjct: 520 SNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 153/385 (39%), Gaps = 73/385 (18%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------- 51
           + +G  G +  A K+FDEM + D VS  S++  + +     +   +F AM          
Sbjct: 120 NMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAV 179

Query: 52  ---------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         + ++   + +ID Y + G V  AR VFD++
Sbjct: 180 TMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM 239

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----- 139
              N+ SW ++I GY KA  +   R LFD M    ++V+SWT ++   +  G        
Sbjct: 240 QWRNLVSWNAMIMGYGKAGNLVAARELFDAM--SQRDVISWTNMITSYSQAGQFTEALRL 297

Query: 140 ------------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVD 186
                       ++ V S  + C       + + A +Y  +   K DI   NA+I  Y  
Sbjct: 298 FKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCK 357

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G + +A E+F  M +++  +W ++I   A NG   +A+   + M +    P+      I
Sbjct: 358 CGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGI 417

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS----ARLAFER 302
           L +C        AHA  +  G E   S+            +G  +D+ S     + AFE 
Sbjct: 418 LLAC--------AHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEF 469

Query: 303 LE----AKDVVSWTAMILAYSNHGH 323
           ++      DVV W  ++ A   HG+
Sbjct: 470 IKEMPVTPDVVIWRILLSASQVHGN 494



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 67/306 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           +G  G +  A +LFD MSQ D +S  +MIT + +     +A  LF+ M ES         
Sbjct: 254 YGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITV 313

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       + +I   +A+ID Y K G V++A +VF E+ +
Sbjct: 314 ASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRK 373

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAK- 140
            +  SWTS+ISG       D     F RM   L+ VV     ++  ++L CAH GL+ K 
Sbjct: 374 KDSVSWTSIISGLAVNGFADSALDYFSRM---LREVVQPSHGAFVGILLACAHAGLVDKG 430

Query: 141 LEVISWTTMCTGLE--------------RNAMTKLAREYFVQMP-NKDIVAWNAMITAYV 185
           LE         GL+              R+   + A E+  +MP   D+V W  +++A  
Sbjct: 431 LEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQ 490

Query: 186 DAGNMAQAS----ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNE 240
             GN+  A     +L  L P  N   +    + YA +     A+K+  LM +S    P+ 
Sbjct: 491 VHGNIPLAEIATKKLLELDPS-NSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSG 549

Query: 241 TTCTSI 246
           ++C  +
Sbjct: 550 SSCIEM 555



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +N + +  +    + +A  LF  + +  +  WN MI  ++ +     A+++ NLM++   
Sbjct: 14  YNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGL 73

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           + N  T   +  +C  + +       HA  ++LGFE    ++      Y     G    +
Sbjct: 74  LGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMY-----GSCGHL 128

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A+  F+ +  +D+VSW +++  Y       +V  +F  M  +G K D +T V V+  C
Sbjct: 129 GLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLAC 188

Query: 354 SHAG 357
           +  G
Sbjct: 189 TSLG 192


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 225/438 (51%), Gaps = 48/438 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K G   +ARKVFDE+ E +V SW + ++   +  ++   R+LFD MP K   
Sbjct: 474 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK--- 530

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               + +SW T+  G  +    + A E F +MP +++V+W+ M+
Sbjct: 531 --------------------DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMV 570

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y   G++  A  +F+ MP +N+ TW  M+   A+ G    A KL   M ++    +  
Sbjct: 571 SGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVA 630

Query: 242 TCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQL 291
              SIL +C   G L      H    +    + T +         KC C           
Sbjct: 631 AVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGC----------- 679

Query: 292 DVNSARLAFE-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            VN A   F+     KD VSW ++I  ++ HGHG +   LFA+M + G  PD +T + VL
Sbjct: 680 -VNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 738

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+H G V++GR+ F+ M R YG  P+ EHY C+ D+L R G +KEA+ ++  M P E 
Sbjct: 739 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSM-PWEP 797

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           + V+ G+LL ACRLH +V  A+     L +LQPS++G Y + +N++A  G+W + A+ R 
Sbjct: 798 NEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARM 857

Query: 471 KME-RRVKKVASFSQIEV 487
           +M+    +K A  S +E+
Sbjct: 858 QMKGTGSQKTAGSSWVEL 875



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 137/266 (51%), Gaps = 23/266 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G   +A K+FDEM + D VS  + +   +R  +L     LF  MPE  ++ V+ + ++D
Sbjct: 483 NGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE--KDTVSWNTILD 540

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY KAG V+ A ++F  + E NV SW++++SGY K   ++  R +FD+MP   KN+V+WT
Sbjct: 541 GYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMP--SKNLVTWT 598

Query: 127 TVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREY--FVQMP 170
            +V  CA  GL+               +L+V +  ++      +    L +    +V+  
Sbjct: 599 IMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKR 658

Query: 171 N--KDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKL 227
           N  +     NA+I  +   G + +A  +F+    Q++  +WN++I  +A +G    A++L
Sbjct: 659 NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALEL 718

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGM 253
              M Q  F P+  T  ++L++C  M
Sbjct: 719 FAQMKQQGFNPDAVTMINVLSACTHM 744


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 266/537 (49%), Gaps = 69/537 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPES------------ 54
           G +  A ++FD M  PD V   S+I+ F RN +    AEAL + + +             
Sbjct: 90  GSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTIL 149

Query: 55  ----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                  +++ + +A+ID Y + G    A+ VFD ++  NV SW
Sbjct: 150 TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 209

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            S++  Y +  +++E  ++F  M  +    N  + + V+  C   GL  +L        C
Sbjct: 210 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLH-------C 262

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           + ++ + +T             DI   NA+++ Y   G + +   + N +   ++ +W  
Sbjct: 263 SAIKHDLIT-------------DIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 309

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG 267
            I    +NG    A+ LL  M    F PN    +S+L+SC     + + M  H LA++LG
Sbjct: 310 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 369

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            + E      CT + +   +     + SARLAF+ +   DV SW ++I  ++ HG   + 
Sbjct: 370 CDSEI-----CTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKA 424

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F++M  +G KPD+ TF+GVL  C+H+G+VE+G   F LM   Y F P   HY+C+ D
Sbjct: 425 LEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMID 484

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L R G+  EA+R+++ M P E D ++   LL +C+LH ++ +     +RL+EL    S 
Sbjct: 485 MLGRNGRFDEALRMINDM-PFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSA 543

Query: 448 AYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGY 503
           +YVL +N++A  GEW++  +VR++M E  VKK A  S IE+  + HT  +  R+M +
Sbjct: 544 SYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFAS--RDMSH 598



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           NV +WTS++SGY +  + +    +F  M       N  +    ++ CA  G +   E + 
Sbjct: 5   NVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVH 64

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
              +  G   +A                    + +I  Y   G++  A E+F+ M   +V
Sbjct: 65  SLAVRAGFAGDAWIG-----------------SCLIEMYSRCGSLPAAKEVFDRMDSPDV 107

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
             + ++I  + RNG    A + L  M +    PNE T T+ILT+C  +L   +   L  +
Sbjct: 108 VGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKK 167

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +G   ++  +      +   +  F+L    A+  F+ L  K+VVSW +M+  Y   G   
Sbjct: 168 IGLRSQSVYSSTALIDFYSRNGEFKL----AKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 223

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           +  ++F  M+  G  P+E     VL  C   GL
Sbjct: 224 EALQVFGDMISEGVDPNEFALSIVLGACGSIGL 256



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 150/379 (39%), Gaps = 43/379 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLFDRMPLKLK 120
           S +I+ Y + G +  A++VFD +   +V  +TSLIS + +  + +     L   +   LK
Sbjct: 80  SCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLK 139

Query: 121 -NVVSWTTVVLGCA-------HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
            N  + TT++  C        H  LI K                          + + ++
Sbjct: 140 PNEHTMTTILTACPRVLGQQIHGYLIKK--------------------------IGLRSQ 173

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            + +  A+I  Y   G    A  +F+ +  +NV +W +M+  Y R+G    A+++   M 
Sbjct: 174 SVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMI 233

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
                PNE   + +L +C  +      H  AI+     +  ++      Y     G    
Sbjct: 234 SEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMY-----GRTGL 288

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V        ++E  D+VSWT  I A   +G G +   L  +M   G  P+   F  VLS 
Sbjct: 289 VEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSS 348

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+    +++G + F+ ++   G        + L ++  + GQ+  A      M  H  D 
Sbjct: 349 CADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVM--HTHDV 405

Query: 413 VVLGALLGACRLHGDVRMA 431
               +L+     HGD   A
Sbjct: 406 TSWNSLIHGHAQHGDANKA 424



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 13/210 (6%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLEN 256
           MP++NV  W +++  Y RNG   AA+ +   M +S   PN+  C + L +C     +   
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H+LA+R GF  +  +    +C    +     L   +A+  F+R+++ DVV +T++I 
Sbjct: 61  EQVHSLAVRAGFAGDAWIG---SCLIEMYSRCGSLP--AAKEVFDRMDSPDVVGYTSLIS 115

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           A+  +G          +MLK G KP+E T   +L+ C        G++    + +  G +
Sbjct: 116 AFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLR 171

Query: 377 PRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            ++ + S  L D   R G+ K A  V   +
Sbjct: 172 SQSVYSSTALIDFYSRNGEFKLAKAVFDSL 201



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           K+VV+WT+++  Y+ +G       +FA M++SG  P++      L  C+  G +  G + 
Sbjct: 4   KNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
            +L  RA GF   A   SCL ++  R G +  A  V  +M     D V   +L+ A   +
Sbjct: 64  HSLAVRA-GFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM--DSPDVVGYTSLISAFCRN 120

Query: 426 GDVRMADYIGERLIEL 441
           G+  +A    E LI++
Sbjct: 121 GEFELA---AEALIQM 133


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/548 (28%), Positives = 264/548 (48%), Gaps = 64/548 (11%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K+  A  +F+++  P       ++  +  N++L +A  LF  +P + ++ ++ +++I   
Sbjct: 72  KLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKAS 131

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           +       A K+FDE+ + N  SWT++I G+    +V+E  R F+ MP   K+V +W  +
Sbjct: 132 IICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAM 191

Query: 129 VLGCAHNG-------LIAKL---EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           V G  +NG       L  ++   +VISWT++  GL+RN  +  A  +F  M     V  +
Sbjct: 192 VNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGIS 251

Query: 179 A------------------------------------------MITAYVDAGNMAQASEL 196
           +                                          ++T Y     M  A ++
Sbjct: 252 STTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKV 311

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F     +NV  W A++     N     A+++ + M +   +PNE++ TS L SC G LE+
Sbjct: 312 FGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVG-LED 370

Query: 257 M----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           +    + HA  I++G E            Y     GF   +  A   F+ +  K+VVSW 
Sbjct: 371 LEKGRVIHAAGIKMGLENAVYTGNSLVVMYS--KCGF---IGDALCVFKGICEKNVVSWN 425

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           ++I+  + HG G     LF  ML+ G + DEIT  G+LS CS +G+++K R  F   +R 
Sbjct: 426 SVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARK 485

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
              K   EHY+C+ D+L R G+V+EA  + + MP  E + +V   LL ACR+H  + +A+
Sbjct: 486 RSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPV-EANSMVWLVLLSACRVHSSLDVAE 544

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKD 491
              +R+ E++P  S AYVL +N++A+   W E A++R KM+   + K    S I +KG  
Sbjct: 545 RAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKGMR 604

Query: 492 HTLLAPMR 499
           H  L+  R
Sbjct: 605 HEFLSADR 612



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 167/386 (43%), Gaps = 44/386 (11%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           ++K  ++D AR VF++I   +V  +T L+  Y     + E   LF+++P   K+ +SW +
Sbjct: 67  HLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNS 126

Query: 128 VV---LGCAHNGLIAKL-------EVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIV 175
           V+   + C       KL         ISWTT+  G         A  +F  MP  +KD+ 
Sbjct: 127 VIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVA 186

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQS 234
            WNAM+  Y + G +  A  LF  MP R+V +W ++I    RNG    A+    N++  S
Sbjct: 187 TWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFS 246

Query: 235 RFMPNETTCTSILTSCEGMLE---NMLAHALAIRLG-------FEQETSLTYKCTCHYVF 284
               + TT    L++   +L+    +  H    + G       F   + +T+  +C    
Sbjct: 247 GVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCK--- 303

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +  A   F     K+VV WTA++     +    +   +F+ M++    P+E 
Sbjct: 304 -------RMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNES 356

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY----SCLADILRRAGQVKEAMR 400
           +F   L+ C     +EKGR     +  A G K   E+     + L  +  + G + +A+ 
Sbjct: 357 SFTSALNSCVGLEDLEKGR-----VIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALC 411

Query: 401 VVSKMPPHERDHVVLGALLGACRLHG 426
           V   +   E++ V   +++  C  HG
Sbjct: 412 VFKGIC--EKNVVSWNSVIVGCAQHG 435



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 45/284 (15%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V +A +LF +M   D +S  S+I    RN    +A   F+ M       ++ + ++ G
Sbjct: 199 GRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCG 258

Query: 68  YVKAGRVDEARKVFDEIYEG----------------NVYSWTSLISGYFKARQVDEGRRL 111
                 +  A K+ D  Y G                + +   SL++ Y   +++ +  ++
Sbjct: 259 ------LSAAAKILD-FYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKV 311

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVI-------------SWTTM---CTGLE 154
           F       KNVV WT ++ GC  N   +  LEV              S+T+    C GLE
Sbjct: 312 FGETV--CKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLE 369

Query: 155 RNAMTKLAREYFVQMPNKDIV-AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                ++     ++M  ++ V   N+++  Y   G +  A  +F  + ++NV +WN++I 
Sbjct: 370 DLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIV 429

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
             A++G    A+ L   M +     +E T T +L++C   GML+
Sbjct: 430 GCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQ 473



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 14/173 (8%)

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
            +Q P     + N     ++    +  A  +FN +P  +V  +  ++  YA N     A+
Sbjct: 49  LIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAI 108

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
            L N       +P+ T  T    S     ++ N    A+ +     Q  S+++    H  
Sbjct: 109 NLFNQ------IPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHG- 161

Query: 284 FWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           F   G    VN A   F  +    KDV +W AM+  Y N+G      RLF +M
Sbjct: 162 FLSTG---RVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQM 211


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/507 (31%), Positives = 248/507 (48%), Gaps = 61/507 (12%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           S   +I ++   H    A ++F + P   R  +  ++MI  Y ++ + +EA +++  + E
Sbjct: 85  SITHLINLYSLFHKCDLARSVFDSTPNPSR--ILWNSMIRAYTRSKQYNEALEMYYCMVE 142

Query: 87  G-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
                 +V+    L+  Y K   +   R +FD+MP                       K 
Sbjct: 143 KGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-----------------------KR 179

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +V++W  M  GL ++    +AR  F QM ++D V+W  M+  Y   G   +  ELF+ M 
Sbjct: 180 DVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 239

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENML 258
             NV TWN +I  Y +NG    A+   + M    F PN  T  S+L +        E M 
Sbjct: 240 LGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA 298

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            HA  I++GF   T +       Y       QLD  S +L F  ++ KD VSW AM+  Y
Sbjct: 299 FHACIIQMGFLSNTLVGNSLIDMYAKCG---QLDY-SEKL-FNEMDHKDTVSWNAMLSGY 353

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HGHG +   LF+ M +S  + D ++FV VLS C HAGLVE+GRK F+ MS  Y  KP 
Sbjct: 354 AVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPD 413

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            EHY+C+ D+L RAG   E +  +  MP  E D  V GALLG+CR+H +V++ +   + L
Sbjct: 414 LEHYACMVDLLGRAGLFDETLGFIKVMPV-EPDAGVWGALLGSCRMHSNVKLGEVALDHL 472

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH----- 492
           ++L+P +   +V+ ++++A  G W +  + R KM +  +KK    S +E+K K H     
Sbjct: 473 VKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVG 532

Query: 493 ---------------TLLAPMREMGYV 504
                          TLL  M ++GYV
Sbjct: 533 DKSHPQLESMHLLWNTLLEKMEKIGYV 559



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 55/300 (18%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES---QRNIVAESAMI 65
           K   A  +FD    P  +   SMI  + R+    +A  ++  M E    +R++   + ++
Sbjct: 98  KCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLV 157

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
           D Y K G +  AR+VFD++ + +V +W ++I+G  ++      RR+FD+M    ++ VSW
Sbjct: 158 DMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM--VDQDDVSW 215

Query: 126 TTVVLGCAHNGLIA---------KLEVISWTTMCTGLERNAMTKLAREYFVQM------P 170
            T++ G AHNG            KL  ++W  +     +N   K A   F QM      P
Sbjct: 216 GTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHP 275

Query: 171 N---------------------------------KDIVAWNAMITAYVDAGNMAQASELF 197
           N                                  + +  N++I  Y   G +  + +LF
Sbjct: 276 NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLF 335

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           N M  ++  +WNAM+  YA +G    A+ L +LM +S+   +  +  S+L++C   G++E
Sbjct: 336 NEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVE 395



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G++  + KLF+EM   D VS  +M++ +  +    +A ALF  M ESQ  I  V+  +++
Sbjct: 326 GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVL 385

Query: 66  DGYVKAGRVDEARKVF 81
                AG V+E RK+F
Sbjct: 386 SACRHAGLVEEGRKIF 401


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 172/586 (29%), Positives = 276/586 (47%), Gaps = 98/586 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVF---------------LRNHDLPKAEA 46
           S  G +G +  A KLFDEM   D V+  SMIT +               +RN +      
Sbjct: 13  SALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHF 72

Query: 47  LFRAMPES----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
            F A   +                        ++   +++ID Y K      A +VF E+
Sbjct: 73  TFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEM 132

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI------ 138
            + N  SW SL+  Y  + +  E   +F+ MP K +  ++W T++ G    G I      
Sbjct: 133 GDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFE--IAWNTMIAGLGRYGEIELCLDM 190

Query: 139 ------AKLEVISWT-----TMCT------------GL-----------ERNAMTKLARE 164
                 + LE   WT     + CT            GL            +N++  L  +
Sbjct: 191 FREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAK 250

Query: 165 Y--------FVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           +         V+   +   V+WNA+I AY+  G + +A  +F  +P++N+ +W +MI  Y
Sbjct: 251 FGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGY 310

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQET 272
           ARNG    A++    M  + F+P++ T  ++L +C  +       + H  AIR GF    
Sbjct: 311 ARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFS--- 367

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
             TY    + +   +    D++ + LAF  + AKD+VS+ A++ A+  HG   +  +L+ 
Sbjct: 368 --TYLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYE 425

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M+  GTKPD++TF+G+L  CSH+GL+E+GR  FN M   +G    A+H +C+ D+L R 
Sbjct: 426 DMMTCGTKPDKMTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRG 485

Query: 393 GQVKEAMRVVSKMP-PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           G + EA  +V K     + +     ALLGAC  HG+V M  Y+G+ L  L+P+   +YVL
Sbjct: 486 GYLAEAKELVKKYSKTSDVEASSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVL 545

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            +N++  RG+W E   VRK M +  +KK+   S IEV+ K    +A
Sbjct: 546 QSNLYCVRGQWKEAEMVRKAMVDEGLKKMPGCSWIEVRNKVTAFVA 591



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 40/256 (15%)

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I+A   +G +  A +LF+ MP R+   WN+MI  Y++ G    A+ +   M  +   P+ 
Sbjct: 12  ISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDH 71

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T T+ L++C G          HAL I LG+     +       Y     G   D  SA 
Sbjct: 72  FTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMY-----GKCFDAFSAG 126

Query: 298 LAFERLEAKDVVSWTAMILAYSNHG---HGFQVFRL------------------------ 330
             F+ +   + VSW +++ AY+N G      ++F L                        
Sbjct: 127 QVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIEL 186

Query: 331 ----FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
               F  M +S  +PD+ T+  ++S C+ +     G     L+ R+ G+    E  + + 
Sbjct: 187 CLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRS-GWSSAMEAKNSIL 245

Query: 387 DILRRAGQVKEAMRVV 402
            +  + G + +A++VV
Sbjct: 246 SLYAKFGSLNDALKVV 261


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 256/531 (48%), Gaps = 73/531 (13%)

Query: 30  SMITVFLRNHDLPKAE----ALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           ++I ++++  D P+A      +   MP+  ++ +  + M+ GYV+ G V+ AR VF+E+ 
Sbjct: 203 ALIALYMKC-DTPEASWDARKVLDEMPD--KDDLTWTTMVVGYVRRGDVNAARSVFEEVD 259

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLIAK 140
                 W ++ISGY ++    +   LF RM     PL   +  ++T+V+  CA+ G    
Sbjct: 260 GKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPL---DEFTFTSVLSACANAGFFVH 316

Query: 141 LEVISW------------------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            + +                      + T   +     +A+  F  M  KD+V+WN +++
Sbjct: 317 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILS 376

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+D+G + +A E+F +MP +N  +W  M+  Y   G    A+KL N M      P + T
Sbjct: 377 GYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYT 436

Query: 243 CTSILTSCE--GMLEN-MLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVN 294
               + +C   G L++    HA  ++ GFE   S     LT    C  V          N
Sbjct: 437 YAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV----------N 486

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            ARL F  +   D VSW AMI A   HGHG +   LF +M+  G  PD I+F+ +L+ C+
Sbjct: 487 DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN 546

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV++G   F  M R +G  P  +HY+ L D+L R+G++ EA  ++  M P E    +
Sbjct: 547 HAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTM-PFEPTPSI 605

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
             A+L  CR +GD+    Y  ++L  + P   G Y+L +N ++A G W + A+VRK M +
Sbjct: 606 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 665

Query: 474 RRVKKVASFSQIEVKGKDHTLL--------------------APMREMGYV 504
           R VKK    S IEV  K H  L                    A MR++GYV
Sbjct: 666 RGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYV 716



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 121/302 (40%), Gaps = 61/302 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G V  A  +F+E+     V   +MI+ ++++     A  LFR M                
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305

Query: 55  ----------------------QRNIVAES------AMIDGYVKAGRVDEARKVFDEIYE 86
                                 Q N V E+      A++  Y K G++  A+++FD +  
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 365

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL--------- 137
            +V SW +++SGY  +  +D+   +F  MP   KN +SW  +V G  H GL         
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAVEVFKVMP--YKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 138 ---IAKLEVISWT-----TMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
                 ++   +T       C  L      +    + VQ        A NA++T Y   G
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A  +F +MP  +  +WNAMI    ++G    A++L + M      P+  +  +ILT
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 249 SC 250
           +C
Sbjct: 544 AC 545



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 108/278 (38%), Gaps = 40/278 (14%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAM 225
           + P +      +++ A   AG +  A+  F+ +P  +R+    NAM+  +AR      A+
Sbjct: 86  RTPTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAV 145

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA------HALAIRLGFEQETS------ 273
            + + +  S  +  +    + L S  G + N+ A      H   ++ G     S      
Sbjct: 146 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 205

Query: 274 -LTYKCTCHYVFWD---------------WGFQL-------DVNSARLAFERLEAKDVVS 310
            L  KC      WD               W   +       DVN+AR  FE ++ K  V 
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 265

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI  Y   G     F LF RM+      DE TF  VLS C++AG    G+     + 
Sbjct: 266 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 325

Query: 371 RAY-GFKPRA--EHYSCLADILRRAGQVKEAMRVVSKM 405
           R    F P A     + L  +  + G++  A R+   M
Sbjct: 326 RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 363


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/459 (31%), Positives = 235/459 (51%), Gaps = 26/459 (5%)

Query: 57  NIVAESAMIDGYVKAGRVDEA-----RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
           ++  ++A++D Y + G          R+VFDE+ + +V SW S++  Y  +        L
Sbjct: 144 DVFVQNALMDVYYRCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGL 203

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKL 161
           F+ MP +  NVVSW TVV G A  G +     +          SW  M +G   +   + 
Sbjct: 204 FEAMPER--NVVSWNTVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEA 261

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +M  KD+V+W AM++AY   G++  A ELF+ MP +N+ +WNAMI  Y  N   
Sbjct: 262 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRY 321

Query: 222 GAAMKLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
             A++   LM  + RF P+E T  S++++C  +      + ++  +G +  T LT     
Sbjct: 322 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIG-KSNTHLTVALGN 380

Query: 281 HYV--FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
             +  F   G   DV  A+  F ++E + +++WT MI  ++ +G   +   ++  M + G
Sbjct: 381 ALIDMFAKCG---DVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREG 437

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            + D   F+  L+ C+H GL+++G   FN M   Y  +PR EHY C+ D+L RAG ++EA
Sbjct: 438 VELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEA 497

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
           +  +  M P E   V+   LL +C  HG+  + +Y+ +++ EL+P +S   VL +N  A 
Sbjct: 498 ILFIESM-PLEPSVVIWVTLLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSAL 556

Query: 459 RGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
            G WD     R  M    ++KV   S I+V  + H  LA
Sbjct: 557 EGRWDGVIGARTSMRNWGIEKVPGSSLIQVGSEVHEFLA 595



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +  A +LFD M   + VS  +MIT +  N    +A   F+ M    R    E
Sbjct: 282 SAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDE 341

Query: 62  SAM---IDGYVKAGRVDEARKVFDEIYEGN----VYSWTSLISGYFKARQVDEGRRLFDR 114
           + +   +    + G V+    +   I + N    V    +LI  + K   V   + +F +
Sbjct: 342 ATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYK 401

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC-TGLERNAMTKLA 162
           M  + + +++WTT++ G A NGL  +  ++ +  MC  G+E +    +A
Sbjct: 402 M--ETRCIITWTTMISGFAFNGL-CREALLVYNNMCREGVELDGTVFIA 447


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 242/460 (52%), Gaps = 46/460 (10%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80
           S+ D +   +++T + +   +  A  LF  MPE  RN+V  +AMI GY++ G  + A  V
Sbjct: 77  SESDVIIGTALLTTYSKCGVVRDARNLFDTMPE--RNVVTWNAMISGYLRNGDTESAYLV 134

Query: 81  FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK 140
           F+++      +W+ +I G+ +   +   RRLFD +P +LKNVV+WT +V G A    I +
Sbjct: 135 FEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYAR---IGE 191

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
           +E                   ARE F  MP ++   W++MI  Y   GN+ +A+ +F+ +
Sbjct: 192 MEA------------------AREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWV 233

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM------- 253
           P RN+  WN+MI  Y +NG    A+     M    F P+E T  S+L++C  +       
Sbjct: 234 PVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGK 293

Query: 254 -LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
            + +M+ H   +   F     +     C           D+ +ARL FE    K++  W 
Sbjct: 294 QIHHMIEHKGIVVNPFVLSGLVDMYAKCG----------DLVNARLVFEGFTEKNIFCWN 343

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           AMI  ++ +G   +V   F RM +S  +PD ITF+ VLS C+H GLV +  +  + M   
Sbjct: 344 AMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKM-EG 402

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           Y  +   +HY C+ D+L RAG++K+A  ++ +MP    D  VLGA+LGACR+H D+ MA+
Sbjct: 403 YRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPND-TVLGAMLGACRIHSDMNMAE 461

Query: 433 YIGERLIELQP--SSSGAYVLSANVHAARGEWDEFAQVRK 470
            +  +LI  +P   +S   VL +N++AA  +W++  ++++
Sbjct: 462 QV-MKLICEEPVTGASSHNVLLSNIYAASEKWEKAERMKR 500



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 26/265 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G  + A  +F++M     V+ + MI  F RN D+  A  LF  +P   +N+V  + M+D
Sbjct: 125 NGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVD 184

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY + G ++ AR+VF+ + E N + W+S+I GYFK   V E   +FD +P  ++N+  W 
Sbjct: 185 GYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVP--VRNLEIWN 242

Query: 127 TVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREYFVQM 169
           +++ G   NG   K                   V+S  + C  L       + ++    +
Sbjct: 243 SMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQL---GHLDVGKQIHHMI 299

Query: 170 PNKDIV----AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
            +K IV      + ++  Y   G++  A  +F    ++N++ WNAMI  +A NG     +
Sbjct: 300 EHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVL 359

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
           +    M +S   P+  T  ++L++C
Sbjct: 360 EFFGRMEESNIRPDGITFLTVLSAC 384


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 180/625 (28%), Positives = 297/625 (47%), Gaps = 136/625 (21%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN----------- 57
           ++ +A ++F+++  P+  S  +MIT + R + + +A  LF +MP  QRN           
Sbjct: 93  EINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMP--QRNSVSYATMITGF 150

Query: 58  ------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
                             IV+ + +I+GY K GRV++A ++FD + E +V SW+S+ISG 
Sbjct: 151 VHAGMFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGL 210

Query: 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA-----HNGLIAKLEV------ISWTT 148
            +  ++ E R+LFD+MP   +NVV+WT ++ G        +G I  L +      ++ TT
Sbjct: 211 CRVGKIVEARKLFDKMP--DRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATT 268

Query: 149 MCTGLE------------------------------RNAMTKLAREY--------FVQMP 170
           +   LE                               + +T  +R Y        F  M 
Sbjct: 269 LTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMV 328

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG----------- 219
            KDIV WN++IT YV +GN+ +A  LF  MPQ++V +W  +I  +A  G           
Sbjct: 329 KKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQM 388

Query: 220 -PEGAAMK-------LLNL------------MFQSRFMPNETTCTSILTSCEGML---EN 256
            PE  A+        L+++            M QS   PN  T + +L++   M    + 
Sbjct: 389 MPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQG 448

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           +  HA+  ++  E + S+       Y         +V+ A   F  ++  +VV++  +I 
Sbjct: 449 LQIHAIVTKMSMENDLSIQNSLVSMYSKCG-----NVDDALKMFYYIKVPNVVAYNTIIT 503

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + +G G +   +F +M      P+ ITF+GVLS C H GLVE+GR+ F+LM   Y  +
Sbjct: 504 GLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQ 563

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYI 434
           P  +HY+C+ D+L RAG   EA+ +VS MP  PH+    V GA+LGA   H  + +A+  
Sbjct: 564 PEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQG---VWGAVLGASWTHLRLDVAELA 620

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KKMERRVKKVASFSQIEVKGKDHT 493
            + L EL+P+S+  YV+ +N+H+  G+  +   +R  K  R +KK    S I +K + H 
Sbjct: 621 AQNLFELEPNSATPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHL 680

Query: 494 L---------LAPMREMGYVVLKEV 509
                     +  M E+ Y + +EV
Sbjct: 681 FHAGHQSIKNIKEMTEIIYALAEEV 705



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 142/552 (25%), Positives = 229/552 (41%), Gaps = 112/552 (20%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V C S IT   RN  + +AE++F  MP   +N V+ +A++  Y +   +++AR+VF++I 
Sbjct: 48  VYCNSQITKLGRNGCIKEAESIFNRMP--NKNTVSWTALLTAYAENSEINKAREVFNKIP 105

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE--- 142
           + NV S+ ++I+ Y +   VDE   LF  MP +  N VS+ T++ G  H G+    E   
Sbjct: 106 DPNVASYNAMITAYHRRNMVDEAFELFSSMPQR--NSVSYATMITGFVHAGMFDMAEKLH 163

Query: 143 -----VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
                ++S   +  G  +    + A   F  M  KD+V+W++MI+     G + +A +LF
Sbjct: 164 REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLF 223

Query: 198 NLMPQRNVWTWNAMIDRYAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGM 253
           + MP RNV TW  MID Y + N  +   +  LN M +     N TT T +L +C   +  
Sbjct: 224 DKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLN-MRREGVEVNATTLTVLLEACGSFDRY 282

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHY---------------------VFWDWGFQLD 292
            E +  H L + LGF+ +  L       Y                     V W+      
Sbjct: 283 GEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 342

Query: 293 VNSARLA-----FERLEAKDVVSWTAMILAYSNHGHG------FQV-------------- 327
           V S  L      FE +  KDVVSWT +I  +++ G        FQ+              
Sbjct: 343 VQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVIS 402

Query: 328 -----------FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA---- 372
                      F  F +ML+S  KP+  T   VLS  +   ++ +G +   ++++     
Sbjct: 403 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 462

Query: 373 -------------------------YGFK-PRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
                                    Y  K P    Y+ +   L + G  KEA+ + +KM 
Sbjct: 463 DLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQ 522

Query: 407 PHE--RDHVVLGALLGACRLHGDV----RMADYIGERLIELQPSSSGAYVLSANVHAARG 460
                 +H+    +L AC   G V    R  D +   L ++QP     Y    ++    G
Sbjct: 523 DDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLM-RSLYDIQPEPD-HYACMVDLLCRAG 580

Query: 461 EWDEFAQVRKKM 472
            +DE   +   M
Sbjct: 581 MFDEAVSLVSSM 592



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 64/250 (25%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +++A  LF+ M Q D VS  ++I  F     + +   LF+ MPE  ++ +A +A+I 
Sbjct: 345 SGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPE--KDAIAWTAVIS 402

Query: 67  GYVKAGRVDEAR----KVFDEIYEGNVYSWT----------------------------- 93
           G V     + A     K+   + + N ++ +                             
Sbjct: 403 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 462

Query: 94  ------SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISW 146
                 SL+S Y K   VD+  ++F    +K+ NVV++ T++ G A NGL  + LE+   
Sbjct: 463 DLSIQNSLVSMYSKCGNVDDALKMF--YYIKVPNVVAYNTIITGLAQNGLGKEALEI--- 517

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                       TK+  +Y V  PN   + +  +++A V  G + +    F+LM  R+++
Sbjct: 518 -----------FTKMQDDYLV--PNH--ITFLGVLSACVHVGLVEEGRRYFDLM--RSLY 560

Query: 207 TWNAMIDRYA 216
                 D YA
Sbjct: 561 DIQPEPDHYA 570



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           Q  +K +V  N+ IT     G + +A  +FN MP +N  +W A++  YA N     A ++
Sbjct: 41  QKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREV 100

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT----CHYV 283
            N +      PN  +  +++T+      NM+  A  +     Q  S++Y        H  
Sbjct: 101 FNKIPD----PNVASYNAMITAYHR--RNMVDEAFELFSSMPQRNSVSYATMITGFVHAG 154

Query: 284 FWDWGFQLD---------------------VNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            +D   +L                      V  A   F+ +  KDVVSW++MI      G
Sbjct: 155 MFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 214

Query: 323 HGFQVFRLFARM 334
              +  +LF +M
Sbjct: 215 KIVEARKLFDKM 226


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 180/625 (28%), Positives = 297/625 (47%), Gaps = 136/625 (21%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN----------- 57
           ++ +A ++F+++  P+  S  +MIT + R + + +A  LF +MP  QRN           
Sbjct: 101 EINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMP--QRNSVSYATMITGF 158

Query: 58  ------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
                             IV+ + +I+GY K GRV++A ++FD + E +V SW+S+ISG 
Sbjct: 159 VHAGMFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGL 218

Query: 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA-----HNGLIAKLEV------ISWTT 148
            +  ++ E R+LFD+MP   +NVV+WT ++ G        +G I  L +      ++ TT
Sbjct: 219 CRVGKIVEARKLFDKMP--DRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATT 276

Query: 149 MCTGLE------------------------------RNAMTKLAREY--------FVQMP 170
           +   LE                               + +T  +R Y        F  M 
Sbjct: 277 LTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMV 336

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG----------- 219
            KDIV WN++IT YV +GN+ +A  LF  MPQ++V +W  +I  +A  G           
Sbjct: 337 KKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQM 396

Query: 220 -PEGAAMK-------LLNL------------MFQSRFMPNETTCTSILTSCEGML---EN 256
            PE  A+        L+++            M QS   PN  T + +L++   M    + 
Sbjct: 397 MPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQG 456

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           +  HA+  ++  E + S+       Y         +V+ A   F  ++  +VV++  +I 
Sbjct: 457 LQIHAIVTKMSMENDLSIQNSLVSMYSKCG-----NVDDALKMFYYIKVPNVVAYNTIIT 511

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + +G G +   +F +M      P+ ITF+GVLS C H GLVE+GR+ F+LM   Y  +
Sbjct: 512 GLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQ 571

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYI 434
           P  +HY+C+ D+L RAG   EA+ +VS MP  PH+    V GA+LGA   H  + +A+  
Sbjct: 572 PEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQG---VWGAVLGASWTHLRLDVAELA 628

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KKMERRVKKVASFSQIEVKGKDHT 493
            + L EL+P+S+  YV+ +N+H+  G+  +   +R  K  R +KK    S I +K + H 
Sbjct: 629 AQNLFELEPNSATPYVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHL 688

Query: 494 L---------LAPMREMGYVVLKEV 509
                     +  M E+ Y + +EV
Sbjct: 689 FHAGHQSIKNIKEMTEIIYALAEEV 713



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 142/552 (25%), Positives = 229/552 (41%), Gaps = 112/552 (20%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V C S IT   RN  + +AE++F  MP   +N V+ +A++  Y +   +++AR+VF++I 
Sbjct: 56  VYCNSQITKLGRNGCIKEAESIFNRMP--NKNTVSWTALLTAYAENSEINKAREVFNKIP 113

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE--- 142
           + NV S+ ++I+ Y +   VDE   LF  MP +  N VS+ T++ G  H G+    E   
Sbjct: 114 DPNVASYNAMITAYHRRNMVDEAFELFSSMPQR--NSVSYATMITGFVHAGMFDMAEKLH 171

Query: 143 -----VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
                ++S   +  G  +    + A   F  M  KD+V+W++MI+     G + +A +LF
Sbjct: 172 REKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLF 231

Query: 198 NLMPQRNVWTWNAMIDRYAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGM 253
           + MP RNV TW  MID Y + N  +   +  LN M +     N TT T +L +C   +  
Sbjct: 232 DKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLN-MRREGVEVNATTLTVLLEACGSFDRY 290

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHY---------------------VFWDWGFQLD 292
            E +  H L + LGF+ +  L       Y                     V W+      
Sbjct: 291 GEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGY 350

Query: 293 VNSARLA-----FERLEAKDVVSWTAMILAYSNHGHG------FQV-------------- 327
           V S  L      FE +  KDVVSWT +I  +++ G        FQ+              
Sbjct: 351 VQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVIS 410

Query: 328 -----------FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA---- 372
                      F  F +ML+S  KP+  T   VLS  +   ++ +G +   ++++     
Sbjct: 411 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 470

Query: 373 -------------------------YGFK-PRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
                                    Y  K P    Y+ +   L + G  KEA+ + +KM 
Sbjct: 471 DLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQ 530

Query: 407 PHE--RDHVVLGALLGACRLHGDV----RMADYIGERLIELQPSSSGAYVLSANVHAARG 460
                 +H+    +L AC   G V    R  D +   L ++QP     Y    ++    G
Sbjct: 531 DDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLM-RSLYDIQPEPD-HYACMVDLLCRAG 588

Query: 461 EWDEFAQVRKKM 472
            +DE   +   M
Sbjct: 589 MFDEAVSLVSSM 600



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 64/250 (25%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +++A  LF+ M Q D VS  ++I  F     + +   LF+ MPE  ++ +A +A+I 
Sbjct: 353 SGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPE--KDAIAWTAVIS 410

Query: 67  GYVKAGRVDEAR----KVFDEIYEGNVYSWT----------------------------- 93
           G V     + A     K+   + + N ++ +                             
Sbjct: 411 GLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMEN 470

Query: 94  ------SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISW 146
                 SL+S Y K   VD+  ++F    +K+ NVV++ T++ G A NGL  + LE+   
Sbjct: 471 DLSIQNSLVSMYSKCGNVDDALKMF--YYIKVPNVVAYNTIITGLAQNGLGKEALEI--- 525

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                       TK+  +Y V  PN   + +  +++A V  G + +    F+LM  R+++
Sbjct: 526 -----------FTKMQDDYLV--PNH--ITFLGVLSACVHVGLVEEGRRYFDLM--RSLY 568

Query: 207 TWNAMIDRYA 216
                 D YA
Sbjct: 569 DIQPEPDHYA 578



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           Q  +K +V  N+ IT     G + +A  +FN MP +N  +W A++  YA N     A ++
Sbjct: 49  QKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREV 108

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT----CHYV 283
            N +      PN  +  +++T+      NM+  A  +     Q  S++Y        H  
Sbjct: 109 FNKIPD----PNVASYNAMITAYHR--RNMVDEAFELFSSMPQRNSVSYATMITGFVHAG 162

Query: 284 FWDWGFQLD---------------------VNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            +D   +L                      V  A   F+ +  KDVVSW++MI      G
Sbjct: 163 MFDMAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVG 222

Query: 323 HGFQVFRLFARM 334
              +  +LF +M
Sbjct: 223 KIVEARKLFDKM 234


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 233/445 (52%), Gaps = 33/445 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I  E+A++D Y K G ++ ARK+FDE+ E NV SW S+++GY K+  +   +R+FD +P 
Sbjct: 143 IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIP- 201

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFV 167
             K+V+SW +++ G A  G + K   +          SW  M +G         AR +F 
Sbjct: 202 -QKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFD 260

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP K+ V+W  MI+ Y   G++  A ELF+ +  +++  +NAMI  YA+N     A+ L
Sbjct: 261 AMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNL 320

Query: 228 LNLMFQS--RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            N M        P+E T  S++++C  + +        +   RLG E +  L       Y
Sbjct: 321 FNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLY 380

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     ++ A   F  L  KD+V++TAMIL    +G      +LF  M+ +   P+
Sbjct: 381 AKCG-----SIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPN 435

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITF+G+L+  +HAGLVE+G + F  M + Y   P  +HY  + D+  RAG+++EA+ ++
Sbjct: 436 SITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELI 494

Query: 403 SKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
             MP  PH     V GALL ACRLH +V   +   +   EL+P ++G   L +N++A+  
Sbjct: 495 KSMPMQPHAG---VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGE 551

Query: 461 EWDEFAQVRKKMERRVKKVASFSQI 485
            WD+  ++RK     V K   FS+I
Sbjct: 552 RWDDVKRLRK-----VTKEKGFSKI 571



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 20/261 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A ++FDE+ Q D +S  SMI+ + R  D+ KA +LF+ MPE  RN  + +AMI 
Sbjct: 187 SGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPE--RNFASWNAMIS 244

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVV 123
           G+V+ G +D AR  FD + + N  SW ++ISGY K   VD    LFD++    L L N +
Sbjct: 245 GHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAM 304

Query: 124 -------SWTTVVLGCAHNGLIAKLEV-------ISWTTMCTGLERNAMTKLAREYFVQM 169
                  S     L   +N L   + V        S  + C+ L           Y  ++
Sbjct: 305 IACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRL 364

Query: 170 P-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
               D     A++  Y   G++ +A ELF+ + ++++  + AMI     NG    A+KL 
Sbjct: 365 GIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLF 424

Query: 229 NLMFQSRFMPNETTCTSILTS 249
           + M  ++  PN  T   +LT+
Sbjct: 425 DEMVDAQIFPNSITFIGLLTA 445


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 165/541 (30%), Positives = 267/541 (49%), Gaps = 67/541 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---------- 57
           G ++ A ++FD++ QP+     S+I  +  + D   A  LFR M  S  +          
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 58  ---------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                      +  ++A+I  YV  G +  ARK+FD+I +  + 
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           SW S+I GY       E   LF +M      P    +  ++  ++  C+ +  +     +
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMREWGMEP----DGFTFVNLLSVCSQSRDLDLGRYV 211

Query: 145 SWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            +    TG++     RNA+  +         A+  F +   K++V+W +MI+AY   G++
Sbjct: 212 HFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSI 271

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A ++F+ MP +NV +WN+MI  Y R G    A+ L N M  SR +P+E T  SIL +C
Sbjct: 272 EVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAAC 331

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDVV 309
             + + ++   +     +       Y  T +    D   +   V +A   F  +  K++V
Sbjct: 332 SQLGDLVMGKKIH---NYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLV 388

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW  +I A + HG G +  +LF  M   GT PDEIT  G+LS CSH+GLV+ G   F+ M
Sbjct: 389 SWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRM 448

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              Y      EHY+C+ D+L R G + EA+ ++ +M P + D VV GALLGACR+HG+V 
Sbjct: 449 GVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRM-PMKPDVVVWGALLGACRIHGNVE 507

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +   I ++L+EL+P S G YVL +N++     W++  ++RK M +R +KK  + S IE+ 
Sbjct: 508 IGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEID 567

Query: 489 G 489
           G
Sbjct: 568 G 568



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 163/392 (41%), Gaps = 61/392 (15%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLK 118
           AG +  A+++FD+I + N + + SLI GY  +    +   LF RM            P  
Sbjct: 35  AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFV 94

Query: 119 LK----NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER----NAMTKLAREYFVQMP 170
           LK        W  V++    +GL  KL + S   +   L        +   AR+ F  + 
Sbjct: 95  LKACGCKSAYWEAVLV----HGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 150

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +K +V+WN+MI  Y   GN  +A  LF     R +  W    D +         + LL++
Sbjct: 151 DKTLVSWNSMIGGYAHMGNWKEAFLLF-----RKMREWGMEPDGF-------TFVNLLSV 198

Query: 231 MFQSRFMP--------NETTCTSILTSCEGMLENMLA-----HALAIRLGFEQETSLTYK 277
             QSR +          E T   I       L +M A     H+        QE ++   
Sbjct: 199 CSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSW 258

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
            +    +   G    +  AR  F+++  K+VVSW +MI  Y   G   +   LF +M  S
Sbjct: 259 TSMISAYAQHG---SIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNS 315

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM---SRAYGFKPRAEHYSCLADILRRAGQ 394
              PDE T V +L+ CS  G +  G+K  N +     AYG       Y+ L D+  + G 
Sbjct: 316 RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYG----VTLYNSLIDMYAKCGP 371

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           V  A+ +  +MP   ++ V    ++GA  LHG
Sbjct: 372 VVTALDIFLEMPG--KNLVSWNVIIGALALHG 401



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 21/261 (8%)

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           DAG++  A  +F+ +PQ N + +N++I  Y+ +     A+ L   M  S   PNE T   
Sbjct: 34  DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93

Query: 246 ILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           +L +C       E +L H LAI+LG     F Q   +     C            ++ AR
Sbjct: 94  VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGL----------IHCAR 143

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ +  K +VSW +MI  Y++ G+  + F LF +M + G +PD  TFV +LS CS + 
Sbjct: 144 KLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSR 203

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            ++ GR   +      G K      + L D+  + G +  A  +  +    E++ V   +
Sbjct: 204 DLDLGRYV-HFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDR--TQEKNVVSWTS 260

Query: 418 LLGACRLHGDVRMADYIGERL 438
           ++ A   HG + +A  I +++
Sbjct: 261 MISAYAQHGSIEVARQIFDQM 281



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A ++FD+M   + VS  SMI+ +LR     +A  LF  M  S+  +V +
Sbjct: 263 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR--VVPD 320

Query: 62  SAMIDGYVKA----GRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFD 113
            A +   + A    G +   +K+ + I        V  + SLI  Y K   V     +F 
Sbjct: 321 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 380

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLERNAMT 159
            MP   KN+VSW  ++   A +G       L  +++        I+ T + +    + + 
Sbjct: 381 EMP--GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 438

Query: 160 KLAREYFVQMP-----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
            +   YF +M       ++I  +  M+      G + +A EL   MP + +V  W A++
Sbjct: 439 DMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALL 497


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 235/457 (51%), Gaps = 34/457 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   SA++D Y K G + +AR +FDEI   N+ SWTS+I+GY +         LF    
Sbjct: 186 DLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFL 245

Query: 117 LKLKNVVSWTTVVLGCAHNG--LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
           ++            G   +G   +  + ++S  + C+ +   ++T+    + ++     D
Sbjct: 246 VEES----------GSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGD 295

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N ++ AY   G +  +  +F+ M +R+V +WN++I  YA+NG    +M++ + M +
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 355

Query: 234 -SRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-----TSLTYKCTCHYVF 284
                 N  T +++L +C       L    H   I++G E       + +   C C    
Sbjct: 356 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCG--- 412

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   V  AR AF+R+  K+V SW+AM+  Y  HGH  +   +F  M  +G KP+ I
Sbjct: 413 -------KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFV VL+ CSHAGL+E+G   F  MS  +  +P  EHY C+ D+L RAG +KEA  ++  
Sbjct: 466 TFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG 525

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           M     D VV GALLGACR+H +V + +    +L EL P + G YVL +N++A  G W++
Sbjct: 526 MKLRP-DFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWED 584

Query: 465 FAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMRE 500
             ++R  M+   + K   FS +++KG+ H  L   RE
Sbjct: 585 VERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 621



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 73/319 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------------------ 49
           G++++A  LFDE+S  + VS  SMIT +++N D  +A  LF+                  
Sbjct: 201 GELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVD 260

Query: 50  --AMPE--------SQRNIV-----------------AESAMIDGYVKAGRVDEARKVFD 82
             AM          S+++I                   E+ ++D Y K G +  +R+VFD
Sbjct: 261 PIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIA 139
            + E +V SW S+I+ Y +     E   +F RM    +   N V+ + V+L CAH+G   
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
             + I    +  GLE N                 +    ++I  Y   G +  A + F+ 
Sbjct: 381 LGKCIHDQVIKMGLESN-----------------VFVGTSIIDMYCKCGKVEMARKAFDR 423

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-- 255
           M ++NV +W+AM+  Y  +G    A+++   M  +   PN  T  S+L +C   G+LE  
Sbjct: 424 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483

Query: 256 ----NMLAHALAIRLGFEQ 270
                 ++H   +  G E 
Sbjct: 484 WHWFKAMSHEFDVEPGVEH 502



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 145/349 (41%), Gaps = 65/349 (18%)

Query: 189 NMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           N    + LFN  + + NV++WN++I   AR+G    A++  + M +    PN +T    +
Sbjct: 100 NNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAI 159

Query: 248 TSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            SC  +L+      AH  A+  GFE +  ++      Y         ++  AR  F+ + 
Sbjct: 160 KSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG-----ELRDARTLFDEIS 214

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARML--KSGTKP------DEITFVGVLSDCS-- 354
            +++VSWT+MI  Y  +    +   LF   L  +SG++       D I  V VLS CS  
Sbjct: 215 HRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRV 274

Query: 355 ---------HAGLVEKGRK----TFNLMSRAYG-----------FKPRAEH----YSCLA 386
                    H  L+++G +      N +  AY            F   AE     ++ + 
Sbjct: 275 SEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSII 334

Query: 387 DILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            +  + G   E+M +  +M        + V L A+L AC   G  R+   I +++I++  
Sbjct: 335 AVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMG- 393

Query: 444 SSSGAYVLSANVHAARGEWDEFAQ------VRKKMER-RVKKVASFSQI 485
                  L +NV       D + +       RK  +R R K V S+S +
Sbjct: 394 -------LESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 435



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 63/273 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-------------- 53
           G++  + ++FD M++ D +S  S+I V+ +N    ++  +F  M +              
Sbjct: 310 GELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 369

Query: 54  --------SQR----------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                   SQR                N+   +++ID Y K G+V+ ARK FD + E NV
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 429

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI--------- 138
            SW+++++GY       E   +F  M +     N +++ +V+  C+H GL+         
Sbjct: 430 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 489

Query: 139 ------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITA-----YVD 186
                  +  V  +  M   L R    K A +    M  + D V W A++ A      VD
Sbjct: 490 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 549

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            G ++ A +LF L P +N   +  + + YA  G
Sbjct: 550 LGEIS-ARKLFELDP-KNCGYYVLLSNIYADAG 580


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 247/491 (50%), Gaps = 31/491 (6%)

Query: 9   KVKEATKLFDEMSQP----DPVSCASMI--TVFLRNHDLPKAEALFRAMPESQRNIVAES 62
           +  EA  LF  M       D V+ +S++   V L +  L  A  L+         +   +
Sbjct: 150 RAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           AMID Y K G ++E RKVFD +   ++ +W S+ISG+ +  QV     +F  M     + 
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP 269

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
              T + L  A         +     +C G  R+    + R  +      DI+A NA++ 
Sbjct: 270 DVLTLLSLASA---------IAQCGDICGG--RSVHCYMVRRGW---DVGDIIAGNAIVD 315

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNET 241
            Y     +  A  +F+ MP R+  +WN +I  Y +NG    A+ + + M +   + P + 
Sbjct: 316 MYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQG 375

Query: 242 TCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T  S+L +      + +    HAL+I+ G   +    Y  TC    +    +LD   A L
Sbjct: 376 TFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDV---YVGTCVIDLYAKCGKLD--EAML 430

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            FE+   +    W A+I     HGHG +   LF++M + G  PD +TFV +L+ CSHAGL
Sbjct: 431 LFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGL 490

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V++GR  FN+M  AYG KP A+HY+C+ D+  RAGQ+ +A   +  MP  + D  + GAL
Sbjct: 491 VDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPI-KPDSAIWGAL 549

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VK 477
           LGACR+HG+V M     + L EL P + G YVL +N++A  G+WD   +VR  + R+ ++
Sbjct: 550 LGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQ 609

Query: 478 KVASFSQIEVK 488
           K   +S IEVK
Sbjct: 610 KTPGWSSIEVK 620



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 160/353 (45%), Gaps = 28/353 (7%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           A  A++  Y++ GRV +A + FDE+   +V +W +++SG  +  +  E   LF RM    
Sbjct: 106 ASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRM---- 161

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWN 178
                   V+ G A +     + V S   MC  L   A+      Y V+   + ++   N
Sbjct: 162 --------VMEGVAGDA----VTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           AMI  Y   G + +  ++F+ M  R++ TWN++I  + + G   +A+++   M  S   P
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP 269

Query: 239 NETTCTSI---LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VN 294
           +  T  S+   +  C  +      H   +R G++    +           D   +L  + 
Sbjct: 270 DVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIV-----DMYAKLSKIE 324

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDC 353
           +A+  F+ +  +D VSW  +I  Y  +G   +   ++  M K  G KP + TFV VL   
Sbjct: 325 AAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAY 384

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           SH G +++G +  + +S   G        +C+ D+  + G++ EAM +  + P
Sbjct: 385 SHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP 436



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 8/237 (3%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D  A  A++ AY+  G +  A   F+ M  R+V  WNAM+    RN     A+ L   M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                 +  T +S+L  C  + +  LA   H  A++ G + E  +     C+ +   +G 
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFV-----CNAMIDVYGK 217

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +   R  F+ + ++D+V+W ++I  +   G       +F  M  SG  PD +T + +
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            S  +  G +  GR     M R           + + D+  +  +++ A R+   MP
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 266/537 (49%), Gaps = 69/537 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPES------------ 54
           G +  A ++FD M  PD V   S+I+ F RN +    AEAL + + +             
Sbjct: 163 GSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTIL 222

Query: 55  ----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                  +++ + +A+ID Y + G    A+ VFD ++  NV SW
Sbjct: 223 TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSW 282

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            S++  Y +  +++E  ++F  M  +    N  + + V+  C   GL  +L        C
Sbjct: 283 CSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLH-------C 335

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           + ++ + +T             DI   NA+++ Y   G + +   + N +   ++ +W  
Sbjct: 336 SAIKHDLIT-------------DIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 382

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLG 267
            I    +NG    A+ LL  M    F PN    +S+L+SC     + + M  H LA++LG
Sbjct: 383 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 442

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            + E      CT + +   +     + SARLAF+ +   DV SW ++I  ++ HG   + 
Sbjct: 443 CDSEI-----CTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKA 497

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F++M  +G KPD+ TF+GVL  C+H+G+VE+G   F LM   Y F P   HY+C+ D
Sbjct: 498 LEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMID 557

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L R G+  EA+R+++ M P E D ++   LL +C+LH ++ +     +RL+EL    S 
Sbjct: 558 MLGRNGRFDEALRMINDM-PFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSA 616

Query: 448 AYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGY 503
           +YVL +N++A  GEW++  +VR++M E  VKK A  S IE+  + HT  +  R+M +
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFAS--RDMSH 671



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 134/304 (44%), Gaps = 23/304 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V E   ++  VK+GR+ +A  +FD +   NV +WTS++SGY +  + +    +F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
                 N  +    ++ CA  G +   E +    +  G   +A                 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG-------------- 152

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              + +I  Y   G++  A E+F+ M   +V  + ++I  + RNG    A + L  M + 
Sbjct: 153 ---SCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQ 209

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
              PNE T T+ILT+C  +L   +   L  ++G   ++  +      +   +  F+L   
Sbjct: 210 GLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKL--- 266

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A+  F+ L  K+VVSW +M+  Y   G   +  ++F  M+  G  P+E     VL  C 
Sbjct: 267 -AKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG 325

Query: 355 HAGL 358
             GL
Sbjct: 326 SIGL 329



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 188/449 (41%), Gaps = 36/449 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES---QRNIVAESA 63
           +G++ +A  LFD M + + V+  S+++ + RN     A A+F  M ES     +    +A
Sbjct: 61  SGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAA 120

Query: 64  MID----GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           ++     G ++AG    +  V    + G+ +  + LI  Y +   +   + +FDRM    
Sbjct: 121 LVACADLGALRAGEQVHSLAV-RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM--DS 177

Query: 120 KNVVSWTTVVLGCAHNG--------LIAKLEV------ISWTTMCTGLERNAMTKLAREY 165
            +VV +T+++     NG        LI  L+        + TT+ T   R  + +    Y
Sbjct: 178 PDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR-VLGQQIHGY 236

Query: 166 FVQ---MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            ++   + ++ + +  A+I  Y   G    A  +F+ +  +NV +W +M+  Y R+G   
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 296

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A+++   M      PNE   + +L +C  +      H  AI+     +  ++      Y
Sbjct: 297 EALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMY 356

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                G    V        ++E  D+VSWT  I A   +G G +   L  +M   G  P+
Sbjct: 357 -----GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 411

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
              F  VLS C+    +++G + F+ ++   G        + L ++  + GQ+  A    
Sbjct: 412 GYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAF 470

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA 431
             M  H  D     +L+     HGD   A
Sbjct: 471 DVM--HTHDVTSWNSLIHGHAQHGDANKA 497



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+V     +   V +G +A A +LF+ MP++NV  W +++  Y RNG   AA+ +   
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFAD 104

Query: 231 MFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +S   PN+  C + L +C     +      H+LA+R GF  +  +    +C    +  
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG---SCLIEMYSR 161

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
              L   +A+  F+R+++ DVV +T++I A+  +G          +MLK G KP+E T  
Sbjct: 162 CGSLP--AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMT 219

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            +L+ C        G++    + +  G + ++ + S  L D   R G+ K A  V   +
Sbjct: 220 TILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSL 274


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 241/474 (50%), Gaps = 47/474 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGY-----------FKARQVDEGRRLFDRMP 116
           Y   GR+D +  +F      +V+ WT++I G+           F A+ + +G    +   
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG---VEPNA 75

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK 172
               +++    +  G A +    KL   S   + TGL     R      A++ F  MP K
Sbjct: 76  FTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEK 135

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +V+  AM+T Y   G +  A  LF+ M +R+   WN MID Y +NG    A+ L   M 
Sbjct: 136 SLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 195

Query: 233 QSRFMPNETTCTSILTSCE--GMLEN-MLAHAL----AIRLGFEQETSLT---YKCTCHY 282
           +++  PNE T  S+L++C   G LE+    H+      I+      T+L     KC    
Sbjct: 196 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG--- 252

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     +  ARL F++++ KDVV+W +MI+ Y+  G   +  +LF  M + G  P 
Sbjct: 253 ---------SLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPT 303

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITF+G+LS C H+G V +G   FN M   YG +P+ EHY C+ ++L RAG V++A  +V
Sbjct: 304 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 363

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             M   E D V+ G LLGACRLHG + + + I E L++   ++SG Y+L +N++AA G W
Sbjct: 364 KNMNI-EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNW 422

Query: 463 DEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           D  A++R  M +  VKK    S IEV  K H  LA     P R+  Y++L+E++
Sbjct: 423 DGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEIN 476



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 40/263 (15%)

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V  + +  +Y   G +  +  LF      +V+ W A+I  +A  G    A+     M   
Sbjct: 10  VPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQ 69

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE----------------------- 271
              PN  T +SIL  C  +      H+ A++LGF+ +                       
Sbjct: 70  GVEPNAFTFSSILKLCP-IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL 128

Query: 272 ---------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                     SLT   TC      +    ++++AR+ F+ +E +D V W  MI  Y+ +G
Sbjct: 129 FDTMPEKSLVSLTAMLTC------YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 182

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              +   LF RMLK+  KP+E+T + VLS C   G +E GR   + +    G +      
Sbjct: 183 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVG 241

Query: 383 SCLADILRRAGQVKEAMRVVSKM 405
           + L D+  + G +++A  V  K+
Sbjct: 242 TALVDMYSKCGSLEDARLVFDKI 264



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 17/221 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
            ++ V+ R  D+  A+ LF  MPE  +++V+ +AM+  Y K G +D AR +FD + E + 
Sbjct: 111 GLLDVYARGGDVVSAQQLFDTMPE--KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 168

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
             W  +I GY +    +E   LF RM LK K   +  TV+   +  G +  LE   W   
Sbjct: 169 VCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVH- 226

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
            + +E N +              ++    A++  Y   G++  A  +F+ +  ++V  WN
Sbjct: 227 -SYIENNGI------------QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWN 273

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +MI  YA  G    A++L   M +    P   T   IL++C
Sbjct: 274 SMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSAC 314



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 60/242 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G++  A  LFD M + D V    MI  + +N    +A  LFR M ++             
Sbjct: 151 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 210

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q N+   +A++D Y K G +++AR VFD+I + +V 
Sbjct: 211 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 270

Query: 91  SWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +W S+I GY       E  +LF    RM L   N +++  ++  C H+G + +     W 
Sbjct: 271 AWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN-ITFIGILSACGHSGWVTE----GW- 324

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL---FNLMPQRN 204
                   +   K+  EY ++     I  +  M+     AG++ QA EL    N+ P   
Sbjct: 325 --------DIFNKMKDEYGIE---PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 373

Query: 205 VW 206
           +W
Sbjct: 374 LW 375


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 251/490 (51%), Gaps = 32/490 (6%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           VS  S + + L  H L      F A P        +SA+I  Y   GR+ +AR +FD++ 
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADP------FIQSALIAMYAACGRIMDARFLFDKMS 178

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEV 143
             +V +W  +I GY +    D   +L++ M       + +   TV+  CAH G ++  + 
Sbjct: 179 HRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKA 238

Query: 144 ISW--------------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
           I                T++           LARE + Q+P+K +V   AM++ Y   G 
Sbjct: 239 IHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGM 298

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  +F+ M ++++  W+AMI  YA +     A++L N M + R +P++ T  S++++
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISA 358

Query: 250 CE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C     +++    H  A + GF +   +       Y         ++  AR  FE +  K
Sbjct: 359 CANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCG-----NLVKAREVFENMPRK 413

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +V+SW++MI A++ HG       LF RM +   +P+ +TF+GVL  CSHAGLVE+G+K F
Sbjct: 414 NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFF 473

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + M   +   P+ EHY C+ D+  RA  +++AM ++  M P   + ++ G+L+ AC+ HG
Sbjct: 474 SSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETM-PFPPNVIIWGSLMSACQNHG 532

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           ++ + ++   RL+EL+P   GA V+ +N++A    WD+   VRK M+ + V K  + S+I
Sbjct: 533 EIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRI 592

Query: 486 EVKGKDHTLL 495
           EV  + H  +
Sbjct: 593 EVNNEVHVFM 602



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 162/384 (42%), Gaps = 73/384 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA- 60
           + +   G++ +A  LFD+MS  D V+   MI  + +N        L+  M  S     A 
Sbjct: 159 AMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAI 218

Query: 61  ------------------------------------ESAMIDGYVKAGRVDEARKVFDEI 84
                                               ++++++ Y   G +  AR+V+D++
Sbjct: 219 ILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQL 278

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------- 136
              ++   T+++SGY K   V + R +FDRM    K++V W+ ++ G A +         
Sbjct: 279 PSKHMVVSTAMLSGYAKLGMVQDARFIFDRM--VEKDLVCWSAMISGYAESYQPLEALQL 336

Query: 137 ---------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVD 186
                    +  ++ ++S  + C  +      K    Y  +    + +   NA+I  Y  
Sbjct: 337 FNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAK 396

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            GN+ +A E+F  MP++NV +W++MI+ +A +G   +A+ L + M +    PN  T   +
Sbjct: 397 CGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGV 456

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFER 302
           L +C        +HA  +  G +  +S+  +         +G  +D+    N  R A E 
Sbjct: 457 LYAC--------SHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMEL 508

Query: 303 LEA----KDVVSWTAMILAYSNHG 322
           +E      +V+ W +++ A  NHG
Sbjct: 509 IETMPFPPNVIIWGSLMSACQNHG 532



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G + +A ++F+ M + + +S +SMI  F  + D   A ALF  M E   + N V    ++
Sbjct: 398 GNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVL 457

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                AG V+E +K F  +   +  S     +  ++  Y +A  + +   L + MP    
Sbjct: 458 YACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFP-P 516

Query: 121 NVVSWTTVVLGCAHNGLI 138
           NV+ W +++  C ++G I
Sbjct: 517 NVIIWGSLMSACQNHGEI 534


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 235/458 (51%), Gaps = 30/458 (6%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            E+  +D Y   GR++ AR VFDE+   +V +W ++I  Y +   VDE  +LF+ M  K 
Sbjct: 148 VETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEM--KD 205

Query: 120 KNVVS----WTTVVLGCAHNG-----------LI---AKLEVISWTTMCTGLERNAMTKL 161
            NV+        +V  C   G           LI    +++    T + T         +
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDM 265

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           ARE+F +M  +++    AM++ Y   G +  A  +F+   ++++  W  MI  Y  +   
Sbjct: 266 AREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYP 325

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQETSLTYKC 278
             A+++   M  S   P+  +  S++++C   G+L+     H+     G E E S+    
Sbjct: 326 QEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNAL 385

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          +++ R  FE++  ++VVSW++MI A S HG       LFARM +  
Sbjct: 386 INMYAKCG-----GLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN 440

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P+E+TFVGVL  CSH+GLVE+G+K F  M+  Y   P+ EHY C+ D+  RA  ++EA
Sbjct: 441 VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
           + V+  MP    + V+ G+L+ ACR+HG++ +  +  +R++EL+P   GA VL +N++A 
Sbjct: 501 LEVIESMPV-ASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAR 559

Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
              W++   +R+ ME + V K    S+I+  GK H  L
Sbjct: 560 EQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFL 597



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 37/304 (12%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
            +++T++     +  A   FR M  S RN+   +AM+ GY K GR+D+A+ +FD+  + +
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKM--SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           +  WT++IS Y ++    E  R+F+ M       +VVS  +V+  CA+ G++ K + +  
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                GLE                  ++   NA+I  Y   G +    ++F  MP+RNV 
Sbjct: 369 CIHVNGLE-----------------SELSINNALINMYAKCGGLDATRDVFEKMPRRNVV 411

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           +W++MI+  + +G    A+ L   M Q    PNE T   +L  C        +H+  +  
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGC--------SHSGLVEE 463

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLE----AKDVVSWTAMILAY 318
           G +   S+T +         +G  +D+    N  R A E +E    A +VV W +++ A 
Sbjct: 464 GKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523

Query: 319 SNHG 322
             HG
Sbjct: 524 RIHG 527


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 165/539 (30%), Positives = 277/539 (51%), Gaps = 44/539 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
           T  V++  ++FDEM   + VS  S++  + +N    +A  LF  M     + N    +A+
Sbjct: 140 TESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAV 199

Query: 65  IDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           + G    G V++  +V   +     +  ++   S+++ Y K+  V + + +FD M  + +
Sbjct: 200 LGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENR 257

Query: 121 NVVSWTTVVLGCAHNGLI---------AKLEVISWTT--------MCTGLERNAMTK-LA 162
           N VSW +++ G   NGL           +LE +  T         +C  ++  +  K L 
Sbjct: 258 NAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLH 317

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPE 221
            +      + D+    A++ AY     +  A +LF +M   +NV +W A+I  Y +NG  
Sbjct: 318 CQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRT 377

Query: 222 GAAMKLLNLMFQSRFM-PNETTCTSILTSCEG----MLENMLAHALAIRLGFEQETSLTY 276
             AM L   M +   + PNE T +S+L +C      + +    H+ +I+ GF        
Sbjct: 378 DRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNAL---- 433

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
            C    +   +  + ++ SA   F+R   +D+VSW +MI  Y+ HG G +  ++F  M  
Sbjct: 434 -CVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRS 492

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
              + D ITF+GV+S C+HAGLV +G++ F+LM + Y   P  EHYSC+ D+  RAG ++
Sbjct: 493 KNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLE 552

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           +AM +++KM P      +   LL ACR+H +V++ +   E+LI LQP  S AYVL +N++
Sbjct: 553 KAMDLINKM-PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIY 611

Query: 457 AARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           A  G W E A+VRK M+ ++VKK A +S IEVK K  + +A     P  +  Y+ L+E+
Sbjct: 612 ATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEEL 670



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 174/377 (46%), Gaps = 31/377 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   ++++D Y+K   V++  +VFDE+   NV SWTSL++GY +    ++  +LF +M 
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L+    N  ++  V+ G A +G + K   +    + +GL+                   I
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST-----------------I 228

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+M+  Y  +  ++ A  +F+ M  RN  +WN+MI  +  NG +  A +L   M   
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
                +T   +++  C  + E   A   H   I+ G + + ++    T   V +    ++
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK---TALMVAYSKCSEI 345

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVL 350
           D ++ +L       ++VVSWTA+I  Y  +G   +   LF +M +  G +P+E TF  VL
Sbjct: 346 D-DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 351 SDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           + C+     VE+G K F+  S   GF       S L  +  + G ++ A  V  +    +
Sbjct: 405 NACAAPTASVEQG-KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQV--D 461

Query: 410 RDHVVLGALLGACRLHG 426
           RD V   +++     HG
Sbjct: 462 RDLVSWNSMISGYAQHG 478



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            + +LF+  PQ+ +   N ++  ++RN     A+ L   + +S    + ++ + +L  C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 252 GMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
            + + ++    H   I+ GF ++ S+       Y+  +      V      F+ +  K+V
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTE-----SVEDGERVFDEMRVKNV 158

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWT+++  Y  +G   Q  +LF++M   G KP+  TF  VL   +  G VEKG +   +
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 369 MSRA 372
           + ++
Sbjct: 219 VIKS 222



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +D+    +++  Y+   ++     +F+ M  +NV +W +++  Y +NG    A+KL + M
Sbjct: 125 EDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM 184

Query: 232 FQSRFMPNETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN  T  ++L   + +G +E  +  H + I+ G +    +       Y      
Sbjct: 185 QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY-----S 239

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
             L V+ A+  F+ +E ++ VSW +MI  +  +G   + F LF RM   G K  +  F  
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299

Query: 349 VLSDCSH 355
           V+  C++
Sbjct: 300 VIKLCAN 306


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 267/561 (47%), Gaps = 88/561 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----------- 55
           +G + EA +LF  M +PD  S  SM++ F ++    ++   F  M               
Sbjct: 94  SGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSA 153

Query: 56  --------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      ++   SA+ID Y K G V  A +VF  + E N+
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNL 213

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCA-----HNGLIAKLE 142
            +W SLI+ Y +     E   +F RM       + V+  +VV  CA       GL     
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHAR 273

Query: 143 VISWTTMCTGLER-NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           V+        L   NA+  +         AR  F +M  +++V+  +M++ Y  A ++  
Sbjct: 274 VVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKA 333

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F+ M QRNV +WNA+I  Y +NG    A++L  L+ +    P   T  ++L S   
Sbjct: 334 ARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS--- 390

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
             +  + ++L           +  KC              +      FE+++ +D VSW 
Sbjct: 391 --DIFVGNSL---------IDMYMKCG------------SIEDGSRVFEKMKERDCVSWN 427

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           A+I+ Y+ +G+G +  ++F +ML  G KPD +T +GVL  CSHAGLVE+GR  F  M   
Sbjct: 428 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE- 486

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           +G  P  +HY+C+ D+L RAG + EA  ++  MP +  D VV G+LL AC++HG++ M  
Sbjct: 487 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNP-DAVVWGSLLAACKVHGNIEMGK 545

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKD 491
           +  E+L+E+ P +SG YVL +N++A  G W +  +VRK M ++ V K    S IEV+ + 
Sbjct: 546 HAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRV 605

Query: 492 HTLLA-----PMREMGYVVLK 507
           H  L      P R+  Y VLK
Sbjct: 606 HVFLVKDKSHPHRKQIYSVLK 626



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 45/272 (16%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------ 54
            S +     VK A  +F +M+Q + VS  ++I  + +N +  +A  LFR +         
Sbjct: 322 VSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTH 381

Query: 55  -------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
                  + +I   +++ID Y+K G +++  +VF+++ E +  SW ++I GY +     E
Sbjct: 382 YTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAE 441

Query: 108 GRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVI--------------SWTTMCT 151
             ++F +M +  +  + V+   V+  C+H GL+ +                   +T M  
Sbjct: 442 ALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVD 501

Query: 152 GLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQ----ASELFNLMPQRNVW 206
            L R      A+     MP N D V W +++ A    GN+      A +L  + P     
Sbjct: 502 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDP----- 556

Query: 207 TWNA-----MIDRYARNGPEGAAMKLLNLMFQ 233
            WN+     + + YA  G  G  +++  LM Q
Sbjct: 557 -WNSGPYVLLSNMYAELGRWGDVVRVRKLMRQ 587


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 256/531 (48%), Gaps = 73/531 (13%)

Query: 30  SMITVFLRNHDLPKAE----ALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           ++I ++++  D P+A      +   MP+  ++ +  + M+ GYV+ G V+ AR VF+E+ 
Sbjct: 205 ALIALYMKC-DTPEASWDARKVLDEMPD--KDDLTWTTMVVGYVRRGDVNAARSVFEEVD 261

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLIAK 140
                 W ++ISGY ++    +   LF RM     PL   +  ++T+V+  CA+ G    
Sbjct: 262 GKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPL---DEFTFTSVLSACANAGFFVH 318

Query: 141 LEVISW------------------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            + +                      + T   +     +A+  F  M  KD+V+WN +++
Sbjct: 319 GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILS 378

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+D+G + +A E+F +MP +N  +W  M+  Y   G    A+KL N M      P + T
Sbjct: 379 GYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYT 438

Query: 243 CTSILTSCE--GMLEN-MLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVN 294
               + +C   G L++    HA  ++ GFE   S     LT    C  V          N
Sbjct: 439 YAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV----------N 488

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            ARL F  +   D VSW AMI A   HGHG +   LF +M+  G  PD I+F+ +L+ C+
Sbjct: 489 DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN 548

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV++G   F  M R +G  P  +HY+ L D+L R+G++ EA  ++  M P E    +
Sbjct: 549 HAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTM-PFEPTPSI 607

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
             A+L  CR +GD+    Y  ++L  + P   G Y+L +N ++A G W + A+VRK M +
Sbjct: 608 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 667

Query: 474 RRVKKVASFSQIEVKGKDHTLL--------------------APMREMGYV 504
           R VKK    S IEV  K H  L                    A MR++GYV
Sbjct: 668 RGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYV 718



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 206/509 (40%), Gaps = 78/509 (15%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           LF     P PV+  S++        L  A A F A+P ++R+ V  +AM+  + +A    
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 76  EARKVFDEIY-EGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            A  VF  +   G++    YS+T+LIS                    ++ N+ +     L
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALISAVG-----------------QMHNLAAPHCTQL 187

Query: 131 GCA--HNGLIAKLEV----ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            C+   +G  A L V    I+    C   E    +  AR+   +MP+KD + W  M+  Y
Sbjct: 188 HCSVLKSGAAAVLSVSNALIALYMKCDTPE---ASWDARKVLDEMPDKDDLTWTTMVVGY 244

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           V  G++  A  +F  +  +    WNAMI  Y ++G    A +L   M   +   +E T T
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 245 SILTSCEG---MLENMLAHALAIRL--GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           S+L++C      +     H   IRL   F  E +L        ++   G    +  A+  
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGG---KIVIAKRI 361

Query: 300 FERLEAKDVVSWTAMILAYSNHG----------------------------HGF---QVF 328
           F+ +  KDVVSW  ++  Y + G                            HG       
Sbjct: 362 FDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 421

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
           +LF +M     KP + T+ G ++ C   G ++ GR+    + +  GF+      + L  +
Sbjct: 422 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLTM 480

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS- 445
             + G V +A  V   MP    D V   A++ A   HG  R A  + ++++   + P   
Sbjct: 481 YAKCGAVNDARLVFLVMP--NLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRI 538

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMER 474
           S   +L+A  HA  G  DE     + M+R
Sbjct: 539 SFLTILTACNHA--GLVDEGFHYFESMKR 565



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 121/302 (40%), Gaps = 61/302 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G V  A  +F+E+     V   +MI+ ++++     A  LFR M                
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 55  ----------------------QRNIVAES------AMIDGYVKAGRVDEARKVFDEIYE 86
                                 Q N V E+      A++  Y K G++  A+++FD +  
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL--------- 137
            +V SW +++SGY  +  +D+   +F  MP   KN +SW  +V G  H GL         
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMP--YKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 138 ---IAKLEVISWT-----TMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
                 ++   +T       C  L      +    + VQ        A NA++T Y   G
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A  +F +MP  +  +WNAMI    ++G    A++L + M      P+  +  +ILT
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545

Query: 249 SC 250
           +C
Sbjct: 546 AC 547


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 245/490 (50%), Gaps = 64/490 (13%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           ARKVFDEI E +  SWT++++GY K    D G  L + M   +K +V++  ++ G  + G
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK-LVAYNAMISGYVNRG 265

Query: 137 LIAKLEVISWTTMCTGLE---------------------------------------RNA 157
              +   +    + +G+E                                        N+
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNS 325

Query: 158 MTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +  L         AR  F +MP KD+V+WNA+++ YV +G++ +A  +F  M ++N+ +W
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR 265
             MI   A NG     +KL + M +  F P +   +  + SC            HA  ++
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK 445

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +GF+  +SL+       ++   G    V  AR  F  +   D VSW A+I A   HGHG 
Sbjct: 446 IGFD--SSLSAGNALITMYAKCGV---VEEARQVFRTMPCLDSVSWNALIAALGQHGHGA 500

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   ++  MLK G +PD IT + VL+ CSHAGLV++GRK F+ M   Y   P A+HY+ L
Sbjct: 501 EAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARL 560

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L R+G+  +A  V+  + P +    +  ALL  CR+HG++ +     ++L  L P  
Sbjct: 561 IDLLCRSGKFSDAESVIESL-PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH 619

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR 499
            G Y+L +N+HAA G+W+E A+VRK M +R VKK  + S IE++ + HT L      P  
Sbjct: 620 DGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEA 679

Query: 500 EMGYVVLKEV 509
           E  Y+ L+++
Sbjct: 680 EAVYIYLQDL 689



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 198/453 (43%), Gaps = 50/453 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           + ++  A +LFDE+S+PD ++  +M++ +  + D+  A  +F   P   R+ V  +AMI 
Sbjct: 62  SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121

Query: 67  GYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           G+        A  +F     E ++ + +++ S+++G   A   D+ ++        LK+ 
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL--ALVADDEKQCVQFHAAALKSG 179

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
             + T V     N L      +S  + C      ++   AR+ F ++  KD  +W  M+T
Sbjct: 180 AGYITSV----SNAL------VSVYSKCA--SSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
            YV  G      EL   M     +  +NAMI  Y   G    A++++  M  S    +E 
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 242 TCTSILTSC--EGMLE-NMLAHALAIR---LGFEQETSLT---YKC-------------- 278
           T  S++ +C   G+L+     HA  +R     F  + SL    YKC              
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP 347

Query: 279 TCHYVFWDWGFQLDVNS-----ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
               V W+      V+S     A+L F+ ++ K+++SW  MI   + +G G +  +LF+ 
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M + G +P +  F G +  C+  G    G++ ++      GF       + L  +  + G
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-YHAQLLKIGFDSSLSAGNALITMYAKCG 466

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            V+EA +V   MP    D V   AL+ A   HG
Sbjct: 467 VVEEARQVFRTMPC--LDSVSWNALIAALGQHG 497



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 17/221 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+++++ +     +A A+F  MP   +++V+ +A++ GYV +G + EA+ +F E+ E N+
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMP--AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW  +ISG  +    +EG +LF  M  +      +       A +G I    V+     
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY-------AFSGAIKSCAVLG--AY 433

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           C G + +A  +L +  F    +  + A NA+IT Y   G + +A ++F  MP  +  +WN
Sbjct: 434 CNGQQYHA--QLLKIGF----DSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWN 487

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+I    ++G    A+ +   M +    P+  T  ++LT+C
Sbjct: 488 ALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTAC 528


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 227/442 (51%), Gaps = 48/442 (10%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++   +++ID Y K G + +ARKVFD + + NV SWT+++ GY     V E R+LFD M
Sbjct: 161 QDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEM 220

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P +                        V SW +M  G  +      AR  F  MP K++V
Sbjct: 221 PHR-----------------------NVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVV 257

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           ++  MI  Y  AG+MA A  LF+   +++V  W+A+I  Y +NG    A+++   M    
Sbjct: 258 SFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMN 317

Query: 236 FMPNETTCTSILTSCEGMLENMLA-----HALAIRLGFEQE------TSLTYKCTCHYVF 284
             P+E    S++++   +    LA     +   I +  +Q+        +  KC      
Sbjct: 318 VKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCG----- 372

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  ++  A   F+    +DVV + +MI   S HG G +   LF RML  G  PDE+
Sbjct: 373 -------NMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEV 425

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            F  +L+ CS AGLV++GR  F  M + Y   P  +HY+C+ D+L R+G +++A  ++ K
Sbjct: 426 AFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELI-K 484

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           + P E      GALLGAC+L+GD  + + +  RL EL+P ++  YVL ++++AA   W +
Sbjct: 485 LIPWEPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWID 544

Query: 465 FAQVRKKM-ERRVKKVASFSQI 485
            + VR KM ERRV+K+   S+I
Sbjct: 545 VSLVRSKMRERRVRKIPGSSKI 566



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 16/244 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G V EA KLFDEM   +  S  SM+  F++  DL  A  +F AMPE  +N+V+ + MID
Sbjct: 207 VGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPE--KNVVSFTTMID 264

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY KAG +  AR +FD   E +V +W++LISGY +    ++  R+F  M L       + 
Sbjct: 265 GYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFI 324

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
            V L  A +  +  LE+  W         + ++K+     + +    ++A  A++     
Sbjct: 325 LVSLMSA-SAQLGHLELAQWVD-------SYVSKIC----IDLQQDHVIA--ALLDMNAK 370

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            GNM +A +LF+  P+R+V  + +MI   + +G    A+ L N M      P+E   T I
Sbjct: 371 CGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVI 430

Query: 247 LTSC 250
           LT+C
Sbjct: 431 LTAC 434



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 28/252 (11%)

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL--DVNSARLA 299
           + T++L +C+        HA  I  G EQ+  L +      +F      L   ++ A   
Sbjct: 31  SITTLLKACKKREHLEQVHACIIHRGLEQDHFLVF------LFISRAHTLLSTLSYASSV 84

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F R+ A   V W  +I ++            FARM   G  PD  T+  V+  CS     
Sbjct: 85  FHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTC-- 142

Query: 360 EKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            K R+  +L   A+      + Y  + L D+  + G++ +A +V   M   +R+ V   A
Sbjct: 143 -KAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMS--DRNVVSWTA 199

Query: 418 LLGACRLHGDV----RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           +L      GDV    ++ D +  R +    S    +V   ++  ARG +D   +      
Sbjct: 200 MLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPE------ 253

Query: 474 RRVKKVASFSQI 485
              K V SF+ +
Sbjct: 254 ---KNVVSFTTM 262


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 243/463 (52%), Gaps = 32/463 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  +++++  Y K G +++A KVFD+I + NV SWT++ISGY    +  E   +F R+ 
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRL- 204

Query: 117 LKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           L++    +  +   V+  C   G +   E I    M  G+ RN                 
Sbjct: 205 LEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN----------------- 247

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +    +++  Y   GNM +A  +F+ MP++++ +W AMI  YA NG    A+ L   M +
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-D 292
               P+  T   +L++C  +    L   ++   G        Y         D   +   
Sbjct: 308 ENVKPDCYTVVGVLSACARLGALELGEWVS---GLVDRNEFLYNPVLGTALIDLYAKCGS 364

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ A   F+ ++ KD V W A+I   + +G+    F LF ++ K G KPD  TF+G+L  
Sbjct: 365 MSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCG 424

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+HAGLV++GR+ FN M R +   P  EHY C+ D+L RAG + EA +++  M P E + 
Sbjct: 425 CTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM-PMEANA 483

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           +V GALLGACR+H D ++A+   ++LIEL+P +SG YVL +N+++A  +WDE A+VR  M
Sbjct: 484 IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSM 543

Query: 473 -ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
            E+R++K    S IEV G  H  L      P+ E  Y  L E+
Sbjct: 544 NEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDEL 586



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 11/252 (4%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++    D  +      LF+ + Q N++ WN MI     N     A++   LM    F+
Sbjct: 50  NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN  T   +L +C  +L+  L    H L ++ GF+ +  +     C Y     G+  D  
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA--KCGYLED-- 165

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F+ +  K+VVSWTA+I  Y   G   +   +F R+L+    PD  T V VLS C+
Sbjct: 166 -AHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACT 224

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
             G +  G      +    G        + L D+  + G +++A  V   MP  E+D V 
Sbjct: 225 QLGDLNSGEWIHKCIMEM-GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP--EKDIVS 281

Query: 415 LGALLGACRLHG 426
            GA++    L+G
Sbjct: 282 WGAMIQGYALNG 293



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 29/254 (11%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVA 60
            GK +EA  +F  + +    PD  +   +++   +  DL   E + + + E    RN+  
Sbjct: 191 VGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFV 250

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            ++++D Y K G +++AR VFD + E ++ SW ++I GY       E   LF +M  + +
Sbjct: 251 GTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM--QRE 308

Query: 121 NVVSWTTVVLG----CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           NV      V+G    CA  G    LE+  W    +GL       + R  F+  P    V 
Sbjct: 309 NVKPDCYTVVGVLSACARLG---ALELGEWV---SGL-------VDRNEFLYNP----VL 351

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             A+I  Y   G+M++A E+F  M +++   WNA+I   A NG    +  L   + +   
Sbjct: 352 GTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGI 411

Query: 237 MPNETTCTSILTSC 250
            P+  T   +L  C
Sbjct: 412 KPDGNTFIGLLCGC 425


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 269/552 (48%), Gaps = 85/552 (15%)

Query: 13  ATKLFDEMSQP----------------DPVS------CASMITVFLRNHDLP---KAEAL 47
           A  +FD + +P                DPVS      C   + +   ++  P   KA A 
Sbjct: 56  AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115

Query: 48  FRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
            +A  E Q+            ++   +++I  YVK GR ++ARKVFD+    +V S+T+L
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVI---------- 144
           I GY     +   +++FD +P+K  +VVSW  ++ G A  G   + LE+           
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVK--DVVSWNALISGYAETGNYKEALELFKEMMKTNVKP 233

Query: 145 ---SWTTMCTGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELF 197
              +  T+ +   ++A  +L R+    + +     ++   NA+I  Y+  G +  AS LF
Sbjct: 234 DESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
             +  ++V +WN +I  Y        A+ L   M +S   PNE T  SIL +C       
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPAC------- 346

Query: 258 LAHALAIRLG-------------FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            AH  AI +G                 +SL       Y         D+ +A+  F+ + 
Sbjct: 347 -AHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCG-----DIEAAQQVFDSML 400

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            + + SW AMI  ++ HG     F +F+RM K G +PD+ITFVG+LS CSH+G+++ GR 
Sbjct: 401 NRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRH 460

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F  M+  Y   P+ EHY C+ D+L  +G  KEA  +++ M   + D V+  +LL AC++
Sbjct: 461 IFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSM-EMDPDGVIWCSLLKACKM 519

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFS 483
           HG+V + +   + LI+++P +SG+YVL +N++A  G W+E A+ R  + ++ +KKV   S
Sbjct: 520 HGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCS 579

Query: 484 QIEVKGKDHTLL 495
            IE+    H  +
Sbjct: 580 SIEIDSVVHEFI 591



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 48/292 (16%)

Query: 138 IAKLEVISWTTMCTGLERN--AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
           +  L +I    + TGL     A++KL  E+ V  P+ D                +  A  
Sbjct: 15  LQSLRIIHAKMIKTGLHNTNYALSKLI-EFSVLSPHFD---------------GLTYAIS 58

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EG 252
           +F+ + + N+  WN M   +A +    +A+ L   M     +PN  T   +L +C   + 
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLDV--------- 293
             E    H   ++LG + +  +       YV           +D     DV         
Sbjct: 119 FREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKG 178

Query: 294 -------NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                   SA+  F+ +  KDVVSW A+I  Y+  G+  +   LF  M+K+  KPDE T 
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
           V VLS C+ +  +E GR+  + +   +GF    +  + L D+  + G+V+ A
Sbjct: 239 VTVLSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETA 289



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 25/264 (9%)

Query: 2   SQFGCTGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--Q 55
           S +  TG  KEA +LF EM     +PD  +  ++++   ++  +     +   + +    
Sbjct: 208 SGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFG 267

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N+   +A+ID Y+K G V+ A  +F+ +   +V SW +LI GY       E   LF  M
Sbjct: 268 SNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 327

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
               +  N V+  +++  CAH G I   ++  W  +             R   V  P+  
Sbjct: 328 LRSGESPNEVTMLSILPACAHLGAI---DIGRWIHVYID---------KRLKGVSNPSS- 374

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
                ++I  Y   G++  A ++F+ M  R++ +WNAMI  +A +G    A  + + M +
Sbjct: 375 --LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRK 432

Query: 234 SRFMPNETTCTSILTSC--EGMLE 255
               P++ T   +L++C   GML+
Sbjct: 433 DGIEPDDITFVGLLSACSHSGMLD 456


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 253/494 (51%), Gaps = 36/494 (7%)

Query: 43   KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
            +  AL    P + +++   SA++D Y K    +EAR+VF+ + E N+ SW SLI+ Y + 
Sbjct: 913  QVHALVSKSPHA-KDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQN 971

Query: 103  RQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE-----------------V 143
              V E   LF  M     + + V+  +V+  CA  GL A  E                 +
Sbjct: 972  GPVGEALVLFVSMMKAGFVPDEVTLASVMSACA--GLAADREGRQVHARVVKSDRFREDM 1029

Query: 144  ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +    +     +   T+ AR  F +M ++ +V+  ++IT Y  + N+  A  +F+ M ++
Sbjct: 1030 VLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEK 1089

Query: 204  NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---- 259
            NV  WN +I  YA+NG E  A++L   + +    P   T  ++L +C  + +  L     
Sbjct: 1090 NVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAH 1149

Query: 260  -HAL--AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             H L    R  F  E+ +    +   ++   G    ++     FER+ A+D VSW AMI+
Sbjct: 1150 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG---SIDDGAKVFERMAARDNVSWNAMIV 1206

Query: 317  AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             ++ +G       LF RML S   PD +T +GVLS C H+GLVE+GR+ F  M+  +G  
Sbjct: 1207 GHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGII 1266

Query: 377  PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
            P  +HY+C+ D+L RAG +KE   ++ +M   E D V+  +LLG+CRLH +V M ++   
Sbjct: 1267 PSQDHYTCMIDLLGRAGHLKEVEELIKEM-SMEPDAVLWASLLGSCRLHKNVEMGEWAAG 1325

Query: 437  RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
            +L EL P +SG YVL +N++A  G+W +  +VR  M+ R V K    S IE+  K    L
Sbjct: 1326 KLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFL 1385

Query: 496  APMREMGYVVLKEV 509
            A  R+ G+    E+
Sbjct: 1386 A--RDNGHPCKNEI 1397



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 204/442 (46%), Gaps = 40/442 (9%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           +S++ ++ +   +  A++LF   P   +++V  ++++ G    GR+ +A++VF+ + E N
Sbjct: 291 SSVVDMYAKCGAMDAAQSLFNLAP--MKDMVMSTSIVSGLASCGRIADAKRVFEGMKERN 348

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--NVVSWTTVVLGCAHNGLIAKLEVISW 146
           + SW ++++GY ++  +     LF +M  + +  + ++  +V+  C     I K E +  
Sbjct: 349 LVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHA 408

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL--FNLMPQRN 204
             +  G   + + K                 NA++  Y   G +  A  L  F +  +R+
Sbjct: 409 FAIKCGFFSSPILK-----------------NALVRMYSKCGCLRSAERLLLFEMGSERD 451

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHA 261
            ++WN++I  Y R+    AA+  L  M QS   PN++T +S L +C  +    + M  HA
Sbjct: 452 SYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHA 510

Query: 262 LAIRLGFEQET---SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             IR G+E +    S+     C    +D+  ++        FE   ++DV+ W +MI   
Sbjct: 511 YMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRI--------FEARPSRDVILWNSMIFGC 562

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           +  G G     LF  M K G K D +TF+G L  C   G V  GR  F LM       PR
Sbjct: 563 AYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDE-SIIPR 621

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            EHY C+ ++L + G + E    V  M P E    +   +   CR +G+ ++ +   + +
Sbjct: 622 IEHYECMIELLGKHGCMVELEDFVEHM-PFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680

Query: 439 IELQPSSSGAYVLSANVHAARG 460
            +  P +   +V + +  +  G
Sbjct: 681 NDSNPLTPVQFVATVDYESNDG 702



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 210/453 (46%), Gaps = 60/453 (13%)

Query: 62   SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            + ++  Y + GR+ +AR+VFDEI   N +S+ +L+S + +  +  + R LF  +P    +
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP--DPD 856

Query: 122  VVSWTTVVLGCAHNG-------LIAKLE----VISWTTMCTGLERNAMTKLARE------ 164
              S+  V+   A +         +A +     V++  +  + L   A  K +R       
Sbjct: 857  QCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHA 916

Query: 165  YFVQMPN-KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
               + P+ KD+   +A++  Y       +A  +F  MP+RN+ +WN++I  Y +NGP G 
Sbjct: 917  LVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGE 976

Query: 224  AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLG-FEQETSLT---- 275
            A+ L   M ++ F+P+E T  S++++C G+    E    HA  ++   F ++  L+    
Sbjct: 977  ALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALV 1036

Query: 276  ---YKCT------CHY-------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
                KC       C +             +   +    +V  A++ F ++  K+V++W  
Sbjct: 1037 DMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNV 1096

Query: 314  MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA- 372
            +I AY+ +G   +  RLF R+ +    P   T+  VL+ C +   ++ G++    + +  
Sbjct: 1097 LIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEG 1156

Query: 373  --YGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
              + F P ++ +  + L D+  + G + +  +V  +M    RD+V   A++     +G  
Sbjct: 1157 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA--RDNVSWNAMIVGHAQNGRA 1214

Query: 429  RMADYIGERLI---ELQPSSSGAYVLSANVHAA 458
            + A ++ ER++   E   S +   VLSA  H+ 
Sbjct: 1215 KDALHLFERMLCSKESPDSVTMIGVLSACGHSG 1247



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 186/452 (41%), Gaps = 46/452 (10%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFR--AMPESQRNIVA 60
            G   EA  LF  M+    +P   + AS+++      DL  A  L    A  + Q N++ 
Sbjct: 129 AGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVIL 188

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++D Y     + +AR+ FD+I E N  SW  ++  Y  A   D    +F RM     
Sbjct: 189 GTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGV 248

Query: 121 NVVSWTT--VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK--------------LARE 164
             + +T    VL C  N  + +   I    +  G E +   +               A+ 
Sbjct: 249 RPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQS 308

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F   P KD+V   ++++     G +A A  +F  M +RN+ +WNAM+  Y R+     A
Sbjct: 309 LFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGA 368

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLT------ 275
           + L   M Q     +  T  S+L++C G+L+       HA AI+ GF     L       
Sbjct: 369 LLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRM 428

Query: 276 -YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             KC C          L      L FE    +D  SW ++I  Y  H           +M
Sbjct: 429 YSKCGC----------LRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM 478

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            +S   P++ TF   L+ C++  L+++G +    M R  G++      S L D+  +  Q
Sbjct: 479 -QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRK-GYEIDDILRSVLIDMYCKCRQ 536

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              ++R+    P   RD ++  +++  C   G
Sbjct: 537 FDYSIRIFEARP--SRDVILWNSMIFGCAYSG 566



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 122/267 (45%), Gaps = 8/267 (2%)

Query: 142  EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
            E     T+ +   R      AR  F ++P+ +  ++NA+++A+   G  A A  LF+ +P
Sbjct: 794  ETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP 853

Query: 202  QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---ML 258
              +  ++NA+I   A++     A+  L  M    F+ N  +  S L++C    ++   + 
Sbjct: 854  DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQ 913

Query: 259  AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
             HAL  +    ++  +       Y   +W        AR  FE +  +++VSW ++I  Y
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWP-----EEARRVFEAMPERNIVSWNSLITCY 968

Query: 319  SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
              +G   +   LF  M+K+G  PDE+T   V+S C+      +GR+    + ++  F+  
Sbjct: 969  EQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFRED 1028

Query: 379  AEHYSCLADILRRAGQVKEAMRVVSKM 405
                + L D+  + G+ + A  V  +M
Sbjct: 1029 MVLSNALVDMYAKCGRTRAARCVFDRM 1055



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 9/233 (3%)

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +N  I +    G++A A ELF+LMP R+  +WNA+I   +R G    A+ L + M     
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P + T  S+L+ C   L+   A   H    +  F+    L       Y     G    +
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVY-----GNCFLL 202

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             AR AF+ +   + +SW  ++  Y   G G     +F RML +G +P   T    +  C
Sbjct: 203 ADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
                +E+GR     + R +G++      S + D+  + G +  A  + +  P
Sbjct: 263 RDNNALEEGRCIHAFVLR-HGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAP 314



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 154/413 (37%), Gaps = 48/413 (11%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLKNVV 123
           I+     G V +AR++FD +   +  SW ++I+   +A    E   LF  M  L ++   
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +    VL C    L           +C    R     +A+  F      +++   A++  
Sbjct: 152 ATMASVLSCCAECL----------DLCGA--RQLHGHIAKRDF----QSNVILGTALVDV 195

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y +   +A A   F+ + + N  +WN ++ RY   G    A+ +   M  +   P   T 
Sbjct: 196 YGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTV 255

Query: 244 TSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQ 290
           +  + +C     + E    HA  +R G+E    +       Y            ++    
Sbjct: 256 SHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPM 315

Query: 291 LD----------------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
            D                +  A+  FE ++ +++VSW AM+  Y           LF +M
Sbjct: 316 KDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQM 375

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            +   + D IT   VLS C+    + KG +      +  GF       + L  +  + G 
Sbjct: 376 RQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKC-GFFSSPILKNALVRMYSKCGC 434

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL-IELQPSSS 446
           ++ A R++      ERD     +L+     H     A Y   ++  E+ P+ S
Sbjct: 435 LRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQS 487



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 75/269 (27%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
            G+ + A  +FD M+    VS  S+IT + R+ ++  A+ +F  M E  +N++A + +I  
Sbjct: 1043 GRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVE--KNVIAWNVLIAA 1100

Query: 68   YVKAGRVDEARKV---------------------------------------------FD 82
            Y + G  +EA ++                                             FD
Sbjct: 1101 YAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFD 1160

Query: 83   EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------ 136
               E +V+   SL+  Y K   +D+G ++F+RM    ++ VSW  +++G A NG      
Sbjct: 1161 FGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM--AARDNVSWNAMIVGHAQNGRAKDAL 1218

Query: 137  -----LIAKLEVISWTTMCTGLE---RNAMTKLAREYFVQM-------PNKDIVAWNAMI 181
                 ++   E     TM   L     + + +  R YF  M       P++D   +  MI
Sbjct: 1219 HLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQD--HYTCMI 1276

Query: 182  TAYVDAGNMAQASELFNLM---PQRNVWT 207
                 AG++ +  EL   M   P   +W 
Sbjct: 1277 DLLGRAGHLKEVEELIKEMSMEPDAVLWA 1305


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 242/478 (50%), Gaps = 44/478 (9%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L K  A    +  SQ N +  + M+D     G V  A  +F ++   N++++ ++I  Y 
Sbjct: 26  LKKIHAHVVKLSLSQSNFLV-TKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYA 84

Query: 101 KARQVDEGRRLFDRM---------------PLKLKNVVSWTTVVLGCAHNGLI----AKL 141
             R       +F +M               P  +K+        LG   +GL+    A  
Sbjct: 85  HNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADF 144

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             I+   +     +      A + F +M ++D+++WN++I  YV  G M  A ELF+ MP
Sbjct: 145 HCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMP 204

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NML 258
            R + +W  MI  Y R G  G A+ +   M      P+E +  ++L +C   G LE    
Sbjct: 205 VRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKW 264

Query: 259 AHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            H  A + GF ++T +         KC C            ++ A   F++L  KDV+SW
Sbjct: 265 IHMYADKNGFLRKTGICNALIEMYAKCGC------------IDEAWNLFDQLVEKDVISW 312

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           + MI   +NHG G++  +LF  M K    P+EITF+GVL  CSH GL ++G K F++MS 
Sbjct: 313 STMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSA 372

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           +Y  +P  EHY CL D+L R+G + +A+  +SKMP  + D  +  +LL +CR+H ++++A
Sbjct: 373 SYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPI-KPDSRIWNSLLSSCRIHRNLQIA 431

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
               ++L+EL+P  SG YVL AN++A  G+W++ + +RK +  +R+KK    S IEV 
Sbjct: 432 VIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVN 489



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 71/315 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+F+EMS  D +S  S+I  +++   +  A  LF  MP   R IV+ + MI G
Sbjct: 160 GDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMP--VRTIVSWTTMITG 217

Query: 68  YVKAGRVDEARKVF----------DEIY------------EGNVYSW------------- 92
           Y + G   +A  VF          DEI                V  W             
Sbjct: 218 YGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRK 277

Query: 93  ----TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
                +LI  Y K   +DE   LFD+  L  K+V+SW+T++ G A++G     E I    
Sbjct: 278 TGICNALIEMYAKCGCIDEAWNLFDQ--LVEKDVISWSTMIGGLANHG--KGYEAIQL-- 331

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QR 203
                E     ++A       PN+  + +  ++ A    G   +  + F++M      + 
Sbjct: 332 ----FEEMCKVRVA-------PNE--ITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEP 378

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
            +  +  +ID   R+G  G A+  ++ M      P+     S+L+SC  +  N+    +A
Sbjct: 379 EIEHYGCLIDLLGRSGCLGQALDTISKM---PIKPDSRIWNSLLSSCR-IHRNLQIAVIA 434

Query: 264 IR--LGFEQETSLTY 276
           ++  +  E E S  Y
Sbjct: 435 VKQLMELEPEESGNY 449


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 232/445 (52%), Gaps = 33/445 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I  E+A++D Y K G ++ ARK+FDE+ E NV SW S+++GY K+  +   +R+FD +P 
Sbjct: 143 IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIP- 201

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFV 167
             K+V+SW +++ G A  G + K              SW  M +G         AR +F 
Sbjct: 202 -QKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFD 260

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP ++ V+W  MI+ Y   G++  A ELF+ +  +++  +NAMI  YA+N     A+KL
Sbjct: 261 AMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKL 320

Query: 228 LNLMFQS--RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            N M        P+E T  S++++C  + +        +   RLG E +  L       Y
Sbjct: 321 FNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLY 380

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     ++ A   F  L  KD+V++TAMIL    +G      +LF  M+ +   P+
Sbjct: 381 AKCG-----SIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPN 435

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITF+G+L+  +HAGLVE+G   F  M + Y   P  +HY  + D+  RAG+++EA+ ++
Sbjct: 436 SITFIGLLTAYNHAGLVEEGYHCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELI 494

Query: 403 SKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
             MP  PH     V GALL ACRLH +V   +   +   EL+P ++G   L +N++A+  
Sbjct: 495 KSMPMQPHAG---VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGE 551

Query: 461 EWDEFAQVRKKMERRVKKVASFSQI 485
            WD+  ++RK     V K   FS+I
Sbjct: 552 RWDDVKRLRK-----VTKEKGFSKI 571



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A ++FDE+ Q D +S  SMI+ + R  D+ KA +LF+ MPE  RN  + +AMI 
Sbjct: 187 SGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPE--RNFASWNAMIS 244

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+ G +D AR  FD + + N  SW ++ISGY K   VD    LFD+  +  K+++ + 
Sbjct: 245 GYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQ--VGGKDLLLFN 302

Query: 127 TVVLGCAHNGLIA-------------------KLEVISWTTMCTGLERNAMTKLAREYFV 167
            ++   A N                       ++ + S  + C+ L           Y  
Sbjct: 303 AMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMR 362

Query: 168 QMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++    D     A++  Y   G++ +A ELF+ + ++++  + AMI     NG    A+K
Sbjct: 363 RLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIK 422

Query: 227 LLNLMFQSRFMPNETTCTSILTS 249
           L + M  ++  PN  T   +LT+
Sbjct: 423 LFDEMVDAQIFPNSITFIGLLTA 445


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 244/452 (53%), Gaps = 22/452 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  +R++FD + + +  S+ S+I GY K   +   R LFD MP
Sbjct: 155 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 214

Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
           +++KN++SW +++ G A       + +KL       ++ISW +M  G  ++   + A+  
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G +  A  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 275 FDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEAL 334

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S  +P++TT   +L +   +    L+ A+ + L   E++  L  K     +
Sbjct: 335 EIFSDMEKESHLLPDDTTLVIVLPAIAQL--GRLSKAIDMHLYIVEKQFYLGGKLGVALI 392

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FE +E K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 393 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKP 449

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 450 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 509

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 510 IEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGM 568

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           W +  +VR  M ER+++K+   S IE+ G+ H
Sbjct: 569 WKDVRRVRTMMKERKIEKIPGCSWIELDGRVH 600



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 172/363 (47%), Gaps = 39/363 (10%)

Query: 8   GKVKEATKLFD--EMSQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G +  A +LFD   M   + +S  SMI+ + +  D +  A  LF  MPE  +++++ ++M
Sbjct: 201 GLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPE--KDLISWNSM 258

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +FD +   +V +W ++I GY K   V   + LFD+MP   ++VV+
Sbjct: 259 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP--HRDVVA 316

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LE+ S            TT+   L   A+ +L R     +  +
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLP--AIAQLGRLSKAIDMHL 374

Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K          A+I  Y   G++  A  +F  +  +++  WNAMI   A +G   +
Sbjct: 375 YIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 434

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A  +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C  
Sbjct: 435 AFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 494

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSG 338
             +      +L  N   +    +E  DV+ W   + A S+H   F+   L A+  +L++G
Sbjct: 495 DILSRSGSIELAKN--LIEEMPVEPNDVI-WRTFLTACSHHKE-FETGELVAKHLILQAG 550

Query: 339 TKP 341
             P
Sbjct: 551 YNP 553


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 242/468 (51%), Gaps = 36/468 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR+VFD +   +  S+ S+I GY K   ++  R LFD MP
Sbjct: 155 DLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMP 214

Query: 117 LKLKNVVSWTTVVLGCAH--NGL---------IAKLEVISWTTMCTGLERNAMTKLAREY 165
            + KN++SW  ++ G A   +G+         + + ++ISW ++  G  ++   + A+  
Sbjct: 215 KEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSL 274

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F +MP +D+V W  M+  Y   G + QA  LF+ MP R+V  +N+MI  Y +N     A+
Sbjct: 275 FNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAI 334

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCE--GMLENMLAHALAI-----RLGFEQETSL--T 275
            + N M  +S   P+ETT   +L++    G L   +   L I     RLG +   +L  T
Sbjct: 335 GIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDT 394

Query: 276 Y-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           Y KC              +  +   FE +E K +  W AMI   + HG G   F +  ++
Sbjct: 395 YSKCG------------SIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 442

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            K   KPD+ITF+GVL+ CSH+GLV++G   F LM R +  +P+ +HY C+ DIL R+G 
Sbjct: 443 EKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGS 502

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           ++ A  ++ +MP    D V+    L AC  H +    + + + L      +  ++VL +N
Sbjct: 503 IELAKNLIEEMPIEPND-VIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSN 561

Query: 455 VHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREM 501
           ++A+ G W E  +VR  M ER+++K+   S IE+ G  H       E+
Sbjct: 562 MYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFVDTMEL 609



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 178/399 (44%), Gaps = 65/399 (16%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES-- 62
           GC G    A ++FD M + D VS  SMI  +++   +  A  LF  MP+ ++N+++ +  
Sbjct: 170 GCLGY---ARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFM 226

Query: 63  ------------------------------AMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                         ++IDGYVK GR+++A+ +F+++ + +V +W
Sbjct: 227 ISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTW 286

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN-------GLIAKLEVIS 145
            +++ GY K   V + + LFDRMP  L++VV++ +++ G   N       G+   +E  S
Sbjct: 287 ATMVDGYAKLGFVHQAKSLFDRMP--LRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKES 344

Query: 146 W-----TTMCTGLERNA----MTKLAREYFVQMPNKDIVAWN---AMITAYVDAGNMAQA 193
                 TT+   L   A    ++K    +   M NK  +      A+I  Y   G++ ++
Sbjct: 345 HLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKS 404

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--E 251
             +F  +  +++  WNAMI   A +G   +A  +L  + +    P++ T   +L +C   
Sbjct: 405 MRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHS 464

Query: 252 GMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
           G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV+ 
Sbjct: 465 GLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKN--LIEEMPIEPNDVI- 521

Query: 311 WTAMILAYSNHGHGFQVFRLFAR--MLKSGTKPDEITFV 347
           W   + A SNH   F+   L A+   L+ G  P     +
Sbjct: 522 WRTFLTACSNHKE-FETGELVAKHLFLQGGYNPSSFVLL 559



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 36/246 (14%)

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHAL 262
           + WNA+I  ++       A+ L  LM ++    ++ + + +L +C  +    E M  H  
Sbjct: 87  FLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHGF 146

Query: 263 AIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
             + G   +         L  KC C            +  AR  F+R+  +D VS+ +MI
Sbjct: 147 LRKTGIWSDLYLQNCLIGLYIKCGC------------LGYARQVFDRMPRRDSVSYNSMI 194

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGRKTFNLMSRAYG 374
             Y   G       LF  M K   K + I++  ++S  +  A  V   +K F+ M     
Sbjct: 195 DGYVKCGMIESARGLFDLMPKE--KKNLISWNFMISGYAQRADGVNVAKKLFDEM----- 247

Query: 375 FKPRAE--HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
             P  +   ++ L D   + G++++A  + +KMP  +RD V    ++      G V  A 
Sbjct: 248 --PEKDLISWNSLIDGYVKHGRMEDAKSLFNKMP--KRDVVTWATMVDGYAKLGFVHQAK 303

Query: 433 YIGERL 438
            + +R+
Sbjct: 304 SLFDRM 309


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 242/456 (53%), Gaps = 22/456 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K   ++  R LFD MP
Sbjct: 156 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMP 215

Query: 117 LKLKNVVSWTTVVLGCAHNG--------LIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A           L A++   ++ISW ++  G  ++   + A++ 
Sbjct: 216 REMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDL 275

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + +A  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 276 FHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEAL 335

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S   P+ETT   +L++   +    L+ A+ + L   E++  L  K     +
Sbjct: 336 EIFSDMEKESHLTPDETTLVIVLSAIAQL--GQLSKAMDMHLYIVEKQFYLGGKLGVALI 393

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A   FE +E K +  W AMI   + HG G   F +   + +   +P
Sbjct: 394 DMYSKCG---SIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEP 450

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ D+L R G ++ A  +
Sbjct: 451 DYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNL 510

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +  + + + + LI     +  +YVL +N++A+ G 
Sbjct: 511 IEEMPIEPND-VIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASFGR 569

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W +   VR  M ER+++KV   S IE+ G+ H    
Sbjct: 570 WKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFFV 605



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 172/395 (43%), Gaps = 69/395 (17%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GC G    A ++FD M Q D VS  SMI  +++   +  A  LF  MP   +N+++ ++M
Sbjct: 171 GCLGF---ARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSM 227

Query: 65  IDGY--------------------------------VKAGRVDEARKVFDEIYEGNVYSW 92
           I GY                                VK GR+++A+ +F  +   +V +W
Sbjct: 228 ISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTW 287

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN-GLIAKLEVIS------ 145
            ++I GY K   V + + LFD+MP   ++VV++ +++ G   N   +  LE+ S      
Sbjct: 288 ATMIDGYAKLGFVHKAKTLFDQMP--HRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKES 345

Query: 146 -----WTTMCTGLERNAMTKL-----AREYFVQMPNKDIVAWN----AMITAYVDAGNMA 191
                 TT+   L  +A+ +L     A +  + +  K          A+I  Y   G++ 
Sbjct: 346 HLTPDETTLVIVL--SAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQ 403

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC- 250
           QA  +F  +  +++  WNAMI   A +G   +A  +L  + +    P+  T   +L +C 
Sbjct: 404 QAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACS 463

Query: 251 -EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
             G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV
Sbjct: 464 HSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKN--LIEEMPIEPNDV 521

Query: 309 VSWTAMILAYSNHGHGFQVFRLFAR--MLKSGTKP 341
           + W   + A  NH   F++  L A+  +L++G  P
Sbjct: 522 I-WRTFLTA-CNHHKEFEIGELVAKHLILQAGYNP 554


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 168/562 (29%), Positives = 281/562 (50%), Gaps = 69/562 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPES-QRNIVAESAMI 65
           G++ EA K+FDEMS+ D  +  +M++   RN    +A  LF R + E    + V  S+++
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVL 176

Query: 66  DGYVKAGRVDEARKVFDEIY------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
              V  G  D+   +   +Y      +  ++   +LI  Y K   ++E + +F  M  + 
Sbjct: 177 PMCVLLG--DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGM--EC 232

Query: 120 KNVVSWTTVVLGCAHNGLIAKL--------------EVISWTTMCTGLERNAMTKLAREY 165
           +++V+W +++ GC   G  A                +V++  ++ + + +    + A+  
Sbjct: 233 RDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSL 292

Query: 166 FVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
              +  +     DI+A NA++  Y    N+  A  +F+ MP ++  +WN +I  Y +NG 
Sbjct: 293 HCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGL 352

Query: 221 EGAAMKLLNLMFQSRFMPN-ETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTY 276
              A++    M +   +   + T  S+L +      + + M  HAL+I++G   +    Y
Sbjct: 353 ANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDV---Y 409

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
             TC    +    +L    A L FE++  +    W A+I     HGHG +   LF+RM +
Sbjct: 410 VGTCLIDLYAKCGKL--AEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQ 467

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            G KPD +TFV +L+ CSHAGLV++GR  F++M   Y   P A+HY+C+AD+L RAGQ+ 
Sbjct: 468 EGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLD 527

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA   +  MP  + D  V GALLGACR+HG+V M     + L EL P + G YVL +N++
Sbjct: 528 EAFNFIQNMPI-KPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMY 586

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVK----------------------GKDHT 493
           A  G+WD   +VR  + R+ ++K   +S IEVK                       +  +
Sbjct: 587 AKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRS 646

Query: 494 LLAPMREMGYV-----VLKEVD 510
           LLA +R +GYV     VL++V+
Sbjct: 647 LLAKIRSVGYVSDYSFVLQDVE 668



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 173/400 (43%), Gaps = 46/400 (11%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +PD  +  S+I     N    +  A    +   + ++    +++  Y++ GR+ EA KVF
Sbjct: 67  RPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVF 126

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
           DE+ E +V +W +++SG  +  +  E   LF RM   +   V+  TV             
Sbjct: 127 DEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRM---VGEGVAGDTVT------------ 171

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            V S   MC  L    +  +   Y V+   +K++   NA+I  Y   G + +A  +F+ M
Sbjct: 172 -VSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGM 230

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
             R++ TWN++I    + G   AA+K+   M  S   P+  T  S+              
Sbjct: 231 ECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL-------------- 276

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWD-------------WGFQLDVNSARLAFERLEAKD 307
           A AI  G +  ++ +  C      WD             +    ++ +A+  F+ +  +D
Sbjct: 277 ASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQD 336

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
            VSW  +I  Y  +G   +    +  M K  G K  + TFV VL   SH G +++G +  
Sbjct: 337 SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMR-M 395

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +S   G        +CL D+  + G++ EAM +  KMP
Sbjct: 396 HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP 435



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 17/229 (7%)

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           N +I  ++R      A  LL  +      F P+  T  S++ +          HA A+RL
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQLHACALRL 96

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G  + +  T     H  +  +G    ++ A   F+ +  +DV +W AM+     +    +
Sbjct: 97  GLVRPSVFTSGSLVH-AYLRFG---RISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAE 152

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP--RAEHYSC 384
              LF RM+  G   D +T   VL  C     V  G +   L+   Y  K     E + C
Sbjct: 153 AVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKELFVC 207

Query: 385 --LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             L D+  + G ++EA  V   M    RD V   +++  C   G    A
Sbjct: 208 NALIDVYGKLGMLEEAQCVFHGMEC--RDLVTWNSIISGCEQRGQTAAA 254


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 241/454 (53%), Gaps = 18/454 (3%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I GY K   +   R LFD MP
Sbjct: 133 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMP 192

Query: 117 LKLKNVVSWTTVVLGCAHNG--------LIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A           L A++   ++ISW ++  G  ++   + A++ 
Sbjct: 193 KEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDL 252

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + +A  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 253 FYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEAL 312

Query: 226 KLLNLMFQ-SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           ++ N M + S   P+ETT   +L++   +    L+ A+++   +  E S           
Sbjct: 313 EIFNNMEKDSHLSPDETTLVIVLSAIAQL--GRLSKAMSMN-KYIVEKSFPLGGKLGVAL 369

Query: 285 WDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
            D   +   +  A   FE ++ K +  W AMI   + HGHG   F +  ++ +   KPD+
Sbjct: 370 IDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDD 429

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF+GVL+ CSH+GLV++G  +F LM R +  +PR +HY C+ DIL R+G ++ A  ++ 
Sbjct: 430 ITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIELAKHLIE 489

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP    D V+    L ACR   +  + + + + LI     +  +YVL +N++A+ G W 
Sbjct: 490 DMPMEPND-VIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASLGMWK 548

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +  +VR  M +R++ K+   S IE+ G  H    
Sbjct: 549 DVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFV 582



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 177/371 (47%), Gaps = 43/371 (11%)

Query: 8   GKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G +  A +LFD M +   + +S  SMI+ + +  D +  A  LF  MPE  +++++ +++
Sbjct: 179 GLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPE--KDLISWNSL 236

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +F  +   +V +W ++I GY K   V + + LFD+MP   ++VV+
Sbjct: 237 IDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP--HRDVVA 294

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAREYFVQMPNK 172
           + +++ G   N   +  LE+ +            TT+   L  +A+ +L R       NK
Sbjct: 295 YNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVL--SAIAQLGRLSKAMSMNK 352

Query: 173 DIVAWN---------AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            IV  +         A+I  +   G++ QA  +F  +  +++  WNAMI   A +G    
Sbjct: 353 YIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGEL 412

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A  +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C  
Sbjct: 413 AFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIV 472

Query: 281 HYVFWDWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLK 336
             +      +L    A+   E   +E  DV+ W   ++A  N    F++  L A+  +L+
Sbjct: 473 DILSRSGSIEL----AKHLIEDMPMEPNDVI-WRTFLIACRNRKE-FEIGELVAKHLILQ 526

Query: 337 SGTKPDEITFV 347
           +G  P     +
Sbjct: 527 AGYNPSSYVLL 537


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 244/452 (53%), Gaps = 22/452 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  +R++FD + + +  S+ S+I GY K   +   R LFD MP
Sbjct: 148 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 207

Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
           +++KN++SW +++ G A       + +KL       ++ISW +M  G  ++   + A+  
Sbjct: 208 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 267

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G +  A  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 268 FDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEAL 327

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ + M  +S  +P++TT   +L +   +    L+ A+ + L   E++  L  K     +
Sbjct: 328 EIFSDMEKESHLLPDDTTLVIVLPAIAQL--GRLSKAIDMHLYIVEKQFYLGGKLGVALI 385

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FE +E K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 386 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKP 442

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 443 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 502

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 503 IEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGM 561

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           W +  +VR  M ER+++K+   S IE+ G+ H
Sbjct: 562 WKDVRRVRTMMKERKIEKIPGCSWIELDGRVH 593



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 172/363 (47%), Gaps = 39/363 (10%)

Query: 8   GKVKEATKLFD--EMSQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G +  A +LFD   M   + +S  SMI+ + +  D +  A  LF  MPE  +++++ ++M
Sbjct: 194 GLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPE--KDLISWNSM 251

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +FD +   +V +W ++I GY K   V   + LFD+MP   ++VV+
Sbjct: 252 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP--HRDVVA 309

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LE+ S            TT+   L   A+ +L R     +  +
Sbjct: 310 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLP--AIAQLGRLSKAIDMHL 367

Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K          A+I  Y   G++  A  +F  +  +++  WNAMI   A +G   +
Sbjct: 368 YIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 427

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
           A  +L  + +    P++ T   +L +C   G+++  L     +R   + E  L  Y C  
Sbjct: 428 AFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 487

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSG 338
             +      +L  N   +    +E  DV+ W   + A S+H   F+   L A+  +L++G
Sbjct: 488 DILSRSGSIELAKN--LIEEMPVEPNDVI-WRTFLTACSHHKE-FETGELVAKHLILQAG 543

Query: 339 TKP 341
             P
Sbjct: 544 YNP 546


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 245/488 (50%), Gaps = 26/488 (5%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           +I ++ + + +  A+  F  +P   RNI + + ++  Y +AG   +ARKVFDE+   N+ 
Sbjct: 52  LIDMYSKCNSMENAQKAFDDLP--IRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIV 109

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           S+ +LIS +       E   +F +M     L   + ++  ++   CA  G +  L  +  
Sbjct: 110 SYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHG 169

Query: 147 TTMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
             +  GLE N +                 +   F +M  +D+V W +M+ AY     +  
Sbjct: 170 AAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDD 229

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  +F+ MP +NV TW A+I+   +N     A+ L   M + +  PN  T   +L++C  
Sbjct: 230 AFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACAD 289

Query: 253 ML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           +    +    H L IR   E      Y   C+ +   +    DV SAR+ F  +  KDVV
Sbjct: 290 LALIAKGKEIHGLIIRRSSELNFPNVY--VCNALIDLYSKSGDVKSARMLFNLILEKDVV 347

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW ++I  ++ +G G +    F +M + G +P+++TF+ VLS CSH GL  +G     LM
Sbjct: 348 SWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELM 407

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            + Y  +P  EHY+ + D+  R  ++ EA+ ++S+ P   +   + GA+LGACR+H ++ 
Sbjct: 408 EKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLD 467

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVK 488
           +A    E L E++P ++G YV+ +NV AA   W +   VRK ME R  KK  ++S IE++
Sbjct: 468 LAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYSCIEIR 527

Query: 489 GKDHTLLA 496
              H  +A
Sbjct: 528 NIRHKFVA 535



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 66/305 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G   +A K+FDEM  P+ VS  ++I+ F  +    ++  +FR M +              
Sbjct: 91  GFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVS 150

Query: 55  --------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                     + N++  +A++D Y K G  D +  +F  + E +
Sbjct: 151 IAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERD 210

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN-------GLIAKL 141
           V +WTS++  Y +  ++D+  R+F  MP  +KNV +WT ++     N        L  ++
Sbjct: 211 VVTWTSMVVAYNQTSRLDDAFRVFSCMP--VKNVHTWTALINALVKNKYSNEALDLFQQM 268

Query: 142 ----------EVISWTTMCTGLERNAMTK------LAREYFVQMPNKDIVAWNAMITAYV 185
                       +   + C  L   A  K      + R   +  PN  +   NA+I  Y 
Sbjct: 269 LEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPN--VYVCNALIDLYS 326

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
            +G++  A  LFNL+ +++V +WN++I  +A+NG    A+     M +    PN+ T  +
Sbjct: 327 KSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLA 386

Query: 246 ILTSC 250
           +L++C
Sbjct: 387 VLSAC 391


>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 218/394 (55%), Gaps = 30/394 (7%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +VY  ++ +S YF+A  V    RLF           S+T  V            +V++WT
Sbjct: 106 DVYVLSAAVSAYFRATDVASAERLF-----------SYTKDVA-----------DVVTWT 143

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           TM TG       + AR +F  MP +++V+WNAM+ AY  AG +++A +LF++MP RN  +
Sbjct: 144 TMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAAS 203

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W++M+    R+     A+++ + M     +PNE+   S +++C   L   L H + +   
Sbjct: 204 WSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACS--LLRSLEHGVWVHAY 261

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            ++E           +   +G    +++A   F  +  K++ SW +MI   + +G   Q 
Sbjct: 262 AKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQA 321

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF +M  +G +P++ITF+G+L  CSH+GLV++GR  FN+M   +G +P  EHY  + D
Sbjct: 322 LSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVD 381

Query: 388 ILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
           +L RAG V+EA+  V+ MP  PH     + GAL GAC++HG+V + + I ++LIEL+P  
Sbjct: 382 LLGRAGHVREAVDFVNSMPVEPHPG---LWGALAGACKIHGEVELGEEIAKKLIELEPRH 438

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
              Y+L +N++ A   WD+ A VR+ + +R+V K
Sbjct: 439 GSRYILLSNIYGASNRWDDMATVRRLLKDRKVPK 472



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 26/265 (9%)

Query: 10  VKEATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           V  A +LF       D V+  +M+T      DL +A   F AMPE  RN+V+ +AM+  Y
Sbjct: 123 VASAERLFSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPE--RNVVSWNAMLGAY 180

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
             AG + +ARK+FD +   N  SW+S+++G  ++ + +E  R+F  M + +  V + + +
Sbjct: 181 ASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEM-IGMGVVPNESAL 239

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
           V   +   L+  LE   W       E   M+              +V   A++  Y   G
Sbjct: 240 VSAVSACSLLRSLEHGVWVHAYAKRELQGMS--------------LVLATAIVDMYGKCG 285

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A  +F  MP +N+++WN+MI   A NG E  A+ L   M  +   PN+ T   +L 
Sbjct: 286 GIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLG 345

Query: 249 SC--EGMLE------NMLAHALAIR 265
           +C   G+++      NM+ +   I+
Sbjct: 346 ACSHSGLVDEGRWLFNMMVNGFGIQ 370



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 25/195 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG ++ A   FD M + + VS  +M+  +     L KA  LF  MP   RN  + S+M+ 
Sbjct: 152 TGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMP--SRNAASWSSMVT 209

Query: 67  GYVKAGRVDEARKVFDE-IYEGNVYSWTSLISGYFKA---RQVDEGRRLFDRMPLKLKNV 122
           G V++ R +EA +VF E I  G V + ++L+S        R ++ G  +      +L+ +
Sbjct: 210 GLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGM 269

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
               ++VL  A         ++     C G+        A   F  MP K+I +WN+MIT
Sbjct: 270 ----SLVLATA---------IVDMYGKCGGIHN------AVRVFAAMPVKNIYSWNSMIT 310

Query: 183 AYVDAGNMAQASELF 197
                G   QA  LF
Sbjct: 311 GLAMNGREMQALSLF 325



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 39/174 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHD----------------LPKAEAL 47
           +   G + +A KLFD M   +  S +SM+T  +R++                 +P   AL
Sbjct: 180 YASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESAL 239

Query: 48  FRAMPESQ---------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
             A+                          ++V  +A++D Y K G +  A +VF  +  
Sbjct: 240 VSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPV 299

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
            N+YSW S+I+G     +  +   LF +M +     N +++  ++  C+H+GL+
Sbjct: 300 KNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLV 353


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 194/347 (55%), Gaps = 24/347 (6%)

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           +AR+ F +MP +D++ WN MI   V  G+   A +LF  MP+RNV +W +MI  YA+ G 
Sbjct: 166 VARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGK 225

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET----- 272
              A+ L   M  +  +PNE T  ++L +C  M   +L    H  + R G+E+       
Sbjct: 226 SKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNT 285

Query: 273 --SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              +  KC C            +  A   F+ +E + VVSW+AMI   + HG       L
Sbjct: 286 LIDMYVKCGC------------LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F +M+ +G KP+ +TF+G+L  CSH G+VEKGRK F  M+R YG  PR EHY C+ D+  
Sbjct: 334 FNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFS 393

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA   +  MP    + VV GALLG C++H ++++A+     L +L P + G YV
Sbjct: 394 RAGLLQEAHEFIMNMPI-APNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYV 452

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           + +N++A  G W++ A+VRK M +R VKK   +S I V+G  +  +A
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVA 499



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 23/216 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +F  MP  QR+++  + MI   VK G  + A K+F E+ E NV SWTS+I GY +  
Sbjct: 167 ARKVFDKMP--QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
           +  E   LF  M     L N V+   V++ CA  G +     I   +  +G E+N     
Sbjct: 225 KSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKN----- 279

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                       I   N +I  YV  G +  A  +F+ M +R V +W+AMI   A +G  
Sbjct: 280 ------------IRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRA 327

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
             A+ L N M  +   PN  T   IL +C   GM+E
Sbjct: 328 EDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 105/267 (39%), Gaps = 32/267 (11%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           + + A  +F L+    V  WN  +  +A       A+ L   + +    P+  TC+ +L 
Sbjct: 62  SFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLK 121

Query: 249 SCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFW-------------------D 286
           +C  +L+     + H    +LG +    L       Y                       
Sbjct: 122 ACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVIT 181

Query: 287 WGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           W   +       D   A   F  +  ++V SWT+MI  Y+  G   +   LF  M  +G 
Sbjct: 182 WNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL 241

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            P+E+T V VL  C+  G +  GR+  +  +R+ G++      + L D+  + G +++A 
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS-GYEKNIRVCNTLIDMYVKCGCLEDAC 300

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHG 426
           R+   M   ER  V   A++     HG
Sbjct: 301 RIFDNM--EERTVVSWSAMIAGLAAHG 325



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 109/268 (40%), Gaps = 63/268 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G++  A K+FD+M Q D ++   MI   ++  D   A  LF  MPE  RN+ + ++
Sbjct: 158 YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPE--RNVRSWTS 215

Query: 64  MIDGYVKAGRVDEARKVFDEI--------------------------------------- 84
           MI GY + G+  EA  +F E+                                       
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSG 275

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           YE N+    +LI  Y K   +++  R+FD M  + + VVSW+ ++ G A +G       +
Sbjct: 276 YEKNIRVCNTLIDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 145 SWTTMCTGLERNAMTKL--------------AREYFVQMPNK-----DIVAWNAMITAYV 185
               + TG++ NA+T +               R+YF  M         I  +  M+  + 
Sbjct: 334 FNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFS 393

Query: 186 DAGNMAQASELFNLMP-QRNVWTWNAMI 212
            AG + +A E    MP   N   W A++
Sbjct: 394 RAGLLQEAHEFIMNMPIAPNGVVWGALL 421



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
            F    + A+L F+ L+A +V  W   + +++          LF R+ +    PD  T  
Sbjct: 58  AFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCS 117

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL  CS    V  G+     + +  G +      + +  +    G++  A +V  KMP 
Sbjct: 118 FVLKACSRLLDVRNGKIVHGYVEK-LGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMP- 175

Query: 408 HERDHVVLGALLGACRLHGDVRMA 431
            +RD +    ++      GD   A
Sbjct: 176 -QRDVITWNIMIARLVKMGDAEGA 198


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 176/603 (29%), Positives = 291/603 (48%), Gaps = 107/603 (17%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVA 60
            G  ++A KLF +M     +P+P + A+++     +  + K   +   + +S     I  
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--- 117
            ++M++ Y K+  V +A+ VFD +   N  SW S+I+G+       E   LF RM L   
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 118 KLKNVVSWTTVVLGCAH----------------NG-----------LIA----------- 139
           KL   + + TV+  CA+                NG           ++A           
Sbjct: 291 KLTQTI-FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 140 KL--------EVISWTTMCTGLERNAMTKLAREYFVQM------PN----KDIVAWNAMI 181
           KL         V+SWT + +G  +N  T  A   F QM      PN      I+  NA +
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV 409

Query: 182 T-------------------------AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           +                         +Y   G+  +A+++F L+ ++++  W+AM+  YA
Sbjct: 410 SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYA 469

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG----MLENMLAHALAIRLGFEQET 272
           + G    A+K+   + +    PNE T +S+L +C      + +    H+ +I+ GF    
Sbjct: 470 QMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNAL 529

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
                C    +   +  + ++ SA   F+R   +D+VSW +MI  Y+ HG G +  ++F 
Sbjct: 530 -----CVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE 584

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M     + D ITF+GV+S C+HAGLV +G++ F+LM + Y   P  EHYSC+ D+  RA
Sbjct: 585 EMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRA 644

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G +++AM +++KM P      +   LL ACR+H +V++ +   E+LI LQP  S AYVL 
Sbjct: 645 GMLEKAMDLINKM-PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 703

Query: 453 ANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVL 506
           +N++A  G W E A+VRK M+ ++VKK A +S IEVK K  + +A     P  +  Y+ L
Sbjct: 704 SNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKL 763

Query: 507 KEV 509
           +E+
Sbjct: 764 EEL 766



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 176/396 (44%), Gaps = 38/396 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   ++++D Y+K   V++  +VFDE+   NV SWTSL++GY +    ++  +LF +M 
Sbjct: 126 DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ 185

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L+    N  ++  V+ G A +G + K   +    + +GL+                   I
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDST-----------------I 228

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+M+  Y  +  ++ A  +F+ M  RN  +WN+MI  +  NG +  A +L   M   
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
                +T   +++  C  + E   A   H   I+ G + + ++    T   V +    ++
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK---TALMVAYSKCSEI 345

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D ++ +L       ++VVSWTA+I  Y  +G   +   LF +M + G +P+  T+  +L 
Sbjct: 346 D-DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL- 403

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             +    V   +    ++   Y   P     + L+D   + G   EA ++   +   E+D
Sbjct: 404 --TANAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELID--EKD 457

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
            V   A+L      G  +M D  G   I LQ +  G
Sbjct: 458 IVAWSAMLS-----GYAQMGDIEGAVKIFLQLAKEG 488



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            + +LF+  PQ+ +   N ++  ++RN     A+ L   + +S    + ++ + +L  C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 252 GMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
            + + ++    H   I+ GF ++ S+       Y+  +      V      F+ +  K+V
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTE-----SVEDGERVFDEMRVKNV 158

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWT+++  Y  +G   Q  +LF++M   G KP+  TF  VL   +  G VEKG +   +
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218

Query: 369 MSRA 372
           + ++
Sbjct: 219 VIKS 222



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +D+    +++  Y+   ++     +F+ M  +NV +W +++  Y +NG    A+KL + M
Sbjct: 125 EDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM 184

Query: 232 FQSRFMPNETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN  T  ++L   + +G +E  +  H + I+ G +    +       Y      
Sbjct: 185 QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY-----S 239

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
             L V+ A+  F+ +E ++ VSW +MI  +  +G   + F LF RM   G K  +  F  
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299

Query: 349 VLSDCSH 355
           V+  C++
Sbjct: 300 VIKLCAN 306


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/522 (31%), Positives = 263/522 (50%), Gaps = 37/522 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEAL----FRAM 51
           SQ G +   ++A  L+ +M +      P   + +S++    R   L + E +    F+  
Sbjct: 75  SQSGSSAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNG 134

Query: 52  PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
            ++   I   + ++D Y + GR+D+AR+VFD +   +   + ++I+ Y +A +V+    L
Sbjct: 135 FQTDERIA--TTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEEL 192

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTK 160
           F+ MP +  N  +   +V G +  G +             + ++  T M +G  +     
Sbjct: 193 FEVMPER--NTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVD 250

Query: 161 LAREYFVQMPNKDIVAWNAMI-TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            AR  F  M  +D+  WN MI   Y   G +  A ++F+ MP+RNV  W +MI  Y + G
Sbjct: 251 DARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVG 310

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTY 276
               A+KL   M  S    ++ T  ++++SC   G L+     HA     G  +  S+  
Sbjct: 311 KFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISV-- 368

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           K +   ++   G   D+  A   F  L  +D  SWT MI+ ++ +G   +   LFA+M +
Sbjct: 369 KNSLIDMYSKCG---DIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEE 425

Query: 337 SG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            G   P+EITF+GVL+ CSH GLVE+G   F+ MS+ YG  PR EHY C+ D+L RA  +
Sbjct: 426 EGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLL 485

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            EA + + +MP    D  +  +LL ACR  G+V +A+Y+ ER+ EL+PS  G  VL +NV
Sbjct: 486 AEAEQFIEEMPIAP-DVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNV 544

Query: 456 HAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           +A    W +  +VR  M R RV K    S IEV G  H  L+
Sbjct: 545 YATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHEFLS 586


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 227/430 (52%), Gaps = 28/430 (6%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I  E+A++D Y K G ++ ARK+FDE+ E NV SW S+++GY K+  +   +R+FD +P 
Sbjct: 139 IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIP- 197

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFV 167
             K+V+SW +++ G A  G + K              SW  M +G         AR +F 
Sbjct: 198 -QKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFD 256

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP  + V+W  MI+ Y   G++  A ELF+ +  +++  +NAMI  YA+N     A+KL
Sbjct: 257 AMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKL 316

Query: 228 LNLMFQS--RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            N M        P+E T  S++++C  + +        +   RLG E +  L       Y
Sbjct: 317 FNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLY 376

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     ++ A   F  L  KD+V++TAMIL    +G      +LF  M+ +   P+
Sbjct: 377 AKCG-----SIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPN 431

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITF+G+L+  +HAGLVE+G + F  M + Y   P  +HY  + D+L RAG+++EA+ ++
Sbjct: 432 LITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLLGRAGRLQEALELI 490

Query: 403 SKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
             MP  PH     V GALL ACRLH +V   +   +   EL+P ++G   L +N++A+  
Sbjct: 491 KSMPMQPHAG---VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGE 547

Query: 461 EWDEFAQVRK 470
            WD+  ++RK
Sbjct: 548 RWDDVKRLRK 557



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A ++FDE+ Q D +S  SMI+ + R  D+ KA +LF+ MPE  RN  + +AMI 
Sbjct: 183 SGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPE--RNFASWNAMIS 240

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GYV+ G +D AR  FD + + N  SW ++ISGY K   VD    LFD+  +  K+++ + 
Sbjct: 241 GYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQ--VGGKDLLLFN 298

Query: 127 TVVLGCAHNGLIA-------------------KLEVISWTTMCTGLERNAMTKLAREYFV 167
            ++   A N                       ++ + S  + C+ L           Y  
Sbjct: 299 AMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMR 358

Query: 168 QMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++    D     A++  Y   G++ +A ELF+ + ++++  + AMI     NG    A+K
Sbjct: 359 RLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIK 418

Query: 227 LLNLMFQSRFMPNETTCTSILTS 249
           L + M  ++  PN  T   +LT+
Sbjct: 419 LFDEMVDAQIFPNLITFIGLLTA 441


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/510 (31%), Positives = 263/510 (51%), Gaps = 39/510 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A+ +F  M    ++I + +AMI  +++ G++D A   F+++ E ++
Sbjct: 186 SLLNMYAKCGDPMMAKVVFDRMV--VKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 90  YSWTSLISGY----FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
            +W S+ISGY    +  R +D   ++  R  +   +  +  +V+  CA+   +   E I 
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKML-RDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 146 WTTMCTGLE-----RNAMTKL---------AREYFVQMPNKD--IVAWNAMITAYVDAGN 189
              + TG +      NA+  +         AR    Q   KD  I  + A++  Y+  G+
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT- 248
           M +A  +F+ +  R+V  W AMI  Y ++G  G A+ L   M      PN  T  ++L+ 
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 249 --SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA- 305
             S   +      H  A++ G     S++      Y          + SA  AF+ +   
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG-----SITSASRAFDLIRCE 477

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +D VSWT+MI+A + HGH  +   LF  ML  G +PD IT+VGV S C+HAGLV +GR+ 
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F++M       P   HY+C+ D+  RAG ++EA   + KMP  E D V  G+LL ACR++
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI-EPDVVTWGSLLSACRVY 596

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            ++ +     ERL+ L+P +SGAY   AN+++A G+W+E A++RK M + RVKK   FS 
Sbjct: 597 KNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSW 656

Query: 485 IEVKGKDHTL-----LAPMREMGYVVLKEV 509
           IEVK K H       + P +   Y+ +K++
Sbjct: 657 IEVKHKVHAFGVEDGIHPQKNEIYITMKKI 686



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 216/538 (40%), Gaps = 108/538 (20%)

Query: 20  MSQPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR--------NIVAESAMIDGYV 69
           M  P P+S ++++ +   L    + K+   F A     R        ++   + +++ Y 
Sbjct: 1   MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYS 60

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           K G    ARK+FDE+     +SW +++S Y K   +D     FDR+P   ++ VSWTT++
Sbjct: 61  KTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP--QRDSVSWTTMI 118

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMT------------------------------ 159
           +G  + G   K   I    M  G+E +  T                              
Sbjct: 119 VGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLR 178

Query: 160 -------------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                               +A+  F +M  KDI +WNAMI  ++  G M  A   F  M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQM 238

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTCTSILTSCEGMLENMLA 259
            +R++ TWN+MI  Y + G +  A+ + + M + S   P+  T  S+L++C  + +  + 
Sbjct: 239 AERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIG 298

Query: 260 ---HALAIRLGF---------------------------EQETSLTYKCTCHYVFWDWGF 289
              H+  +  GF                           EQ  +   K        D   
Sbjct: 299 EQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358

Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           +L D+N A+  F+ L+ +DVV+WTAMI+ Y  HG   +   LF  M+    +P+  T   
Sbjct: 359 KLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAA 418

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-----CLADILRRAGQVKEAMRVVS 403
           +LS  S    +  G++      ++       E YS      L  +  +AG +  A R   
Sbjct: 419 MLSVASSLASLGHGKQIHGSAVKS------GEIYSVSVSNALITMYAKAGSITSASRAFD 472

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSS-SGAYVLSANVHAA 458
            +   ERD V   +++ A   HG    A  + E ++   L+P   +   V SA  HA 
Sbjct: 473 -LIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 142/330 (43%), Gaps = 31/330 (9%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR+ F +MP +   +WN +++AY   G+M  + E F+ +PQR+  +W  MI  Y   G  
Sbjct: 68  ARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQY 127

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKC 278
             A++++  M +    P++ T T++L S      +      H+  ++LG     S++   
Sbjct: 128 HKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSL 187

Query: 279 TCHY----------VFWDWGFQLDVNS----------------ARLAFERLEAKDVVSWT 312
              Y          V +D     D++S                A   FE++  +D+V+W 
Sbjct: 188 LNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 313 AMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           +MI  Y+  G+  +   +F++ML+ S   PD  T   VLS C++   +  G +  + +  
Sbjct: 248 SMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVT 307

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             GF       + L  +  R G V+ A R++ +    +       ALL      GD+  A
Sbjct: 308 T-GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEA 366

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGE 461
             I + L +    +  A ++    H   GE
Sbjct: 367 KNIFDSLKDRDVVAWTAMIVGYEQHGLYGE 396



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 63/289 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-PESQR---------- 56
           G + EA  +FD +   D V+  +MI  + ++    +A  LFR+M  E QR          
Sbjct: 361 GDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAML 420

Query: 57  --------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIY-EGNV 89
                                     ++   +A+I  Y KAG +  A + FD I  E + 
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK------- 140
            SWTS+I    +    +E   LF+ M ++    + +++  V   C H GL+ +       
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540

Query: 141 -------LEVIS-WTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITA-----YVD 186
                  +  +S +  M     R  + + A+E+  +MP   D+V W ++++A      +D
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNID 600

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            G +A A  L  L P+ N   ++A+ + Y+  G    A K+   M   R
Sbjct: 601 LGKVA-AERLLLLEPE-NSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/489 (30%), Positives = 246/489 (50%), Gaps = 27/489 (5%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAMIDGYVKAG 72
           ++  EM  PD ++   +I +  + +D+     L  F        +     A++  Y K G
Sbjct: 157 RMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCG 216

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            V+ AR+VF ++   ++  W  ++S Y      +E  R+F+ M L + N   +T   L  
Sbjct: 217 FVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSL-- 274

Query: 133 AHNGLIAKLEVISWTTM-CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
                   L VIS   +      +   + + R+ F    + D++  +A+I  Y  + N+ 
Sbjct: 275 --------LSVISDDALEYYDFGKQVHSLVLRQSF----DSDVLVASALINMYAKSENII 322

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC- 250
            A  +F+ M  RNV  WN MI  +  +G     MKL+  M +  F+P+E T +SI++SC 
Sbjct: 323 DARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCG 382

Query: 251 --EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
               + E +  HA A++L  +   S+       Y     G    + SA   FE     D+
Sbjct: 383 YASAITETLQVHAFAVKLSCQDFLSVANSLISAYS--KCG---SITSAFKCFELTSQPDL 437

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           V+WT++I AY+ HG   +   +F +ML  G KPD I F+GVLS C+H GLV KG   F L
Sbjct: 438 VTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKL 497

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M+ AY   P +EHY+CL D+L R G + EA  ++  MP  E D   LGA +G+C+LH ++
Sbjct: 498 MTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPI-EVDSDTLGAFIGSCKLHSNM 556

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEV 487
            +A    E+L  ++P  S  Y + +N+ A++  W +  ++RK ME +R  KV   S IE+
Sbjct: 557 ELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEI 616

Query: 488 KGKDHTLLA 496
             + H+ ++
Sbjct: 617 GNQIHSFVS 625



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 175/417 (41%), Gaps = 47/417 (11%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE--GRRL----FDR 114
           ++ ++  Y+K    ++A+K+F+E+   NV SW  +I         +E  G RL    F R
Sbjct: 98  QNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRR 157

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
           M L++        V      NGLI          +CT      M      + V++  + D
Sbjct: 158 MLLEM-------MVPDHITFNGLIC---------LCTQFNDIEMGVQLHCFTVKVGFDLD 201

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
                A++  Y   G +  A  +F  +  R++  WN M+  Y  N     A ++ N M  
Sbjct: 202 CFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRL 261

Query: 234 SRFMPNETTCTSILTSC-EGMLE----NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                +E T +S+L+   +  LE        H+L +R  F+ +  +       Y   +  
Sbjct: 262 DVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSE-- 319

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              ++  AR  F+ +  ++VV+W  MI+ + NHG G +V +L   ML+ G  PDE+T   
Sbjct: 320 ---NIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISS 376

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSK 404
           ++S C +A  +     T  L   A+  K   + +  +A+ L     + G +  A +    
Sbjct: 377 IISSCGYASAI-----TETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFEL 431

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSSSGAY-VLSANVHAA 458
               + D V   +L+ A   HG    +  + E+++   ++P       VLSA  H  
Sbjct: 432 TS--QPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCG 486


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 251/489 (51%), Gaps = 40/489 (8%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           SC ++  + + +  L +A  +F        ++ A S +I   +    +D A +VF +I  
Sbjct: 24  SCTTLSHLKIIHAHLIRAHTIF--------DVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLF----------DRM--PLKLKNVVSWTTVVLGCAH 134
            N++ + S I G+  ++  D+    +          D +  P  +K      ++ +G   
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 135 NGLIAK----LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           +G I +     +V    ++ T        K A   F ++   D+V+W +M+  Y+ +G++
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A +LF+ MP++N+ TW+ MI  YA+N     A++L  L+       NET   S++ SC
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 251 EGMLENMLAHALAIRLGFE-QETSLTYKCTCHYVFWDWGFQL-----DVNSARLAFERLE 304
                   AH  A+ LG    +  L  K T + +       +      ++ A   F++L 
Sbjct: 256 --------AHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLP 307

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +D +SWT +I  ++ HG+  +    F+RM K+G  P EITF  VLS CSH GLVE+G +
Sbjct: 308 GRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLE 367

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F  M R Y  +PR EHY C+ D+L RAG++ EA + V++M P + +  + GALLGACR+
Sbjct: 368 LFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEM-PMKPNAPIWGALLGACRI 426

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFS 483
           H +  +A+  G+ LIEL+P  SG YVL +N++A   +W+    +R+ M ER V K   ++
Sbjct: 427 HKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYT 486

Query: 484 QIEVKGKDH 492
             E+ GK H
Sbjct: 487 LFEMDGKVH 495



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 32/276 (11%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + +   G +K A+ +F  +S  D VS  SM+  ++++ D+  A  LF  MPE  +N+V 
Sbjct: 155 VTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPE--KNLVT 212

Query: 61  ESAMIDGYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            S MI GY K    D+A +++     E    N     S+I+       ++ G R  D + 
Sbjct: 213 WSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYI- 271

Query: 117 LKLK---NVVSWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAR 163
           L+ K   N++  T +V   A  G I K           + +SWTT+  G   +   + A 
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331

Query: 164 EYFVQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDR 214
           EYF +M    +    + + A+++A    G + +  ELF  M      +  +  +  M+D 
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDL 391

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             R G    A K +N M      PN     ++L +C
Sbjct: 392 LGRAGKLAEAEKFVNEM---PMKPNAPIWGALLGAC 424


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/502 (31%), Positives = 242/502 (48%), Gaps = 54/502 (10%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGR 73
           +F  ++ PD  S  +MI  F+   +  KA   +  M +   + N      ++  Y     
Sbjct: 82  VFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPS 141

Query: 74  VDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
             E R V  ++    +  +V++  +LI  Y K   + +   LFD MP    NVV+W T++
Sbjct: 142 YQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNH--NVVTWNTMI 199

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
            GC                 C   ER      AR  F +MP +++ +WNA++  Y   G+
Sbjct: 200 TGCFG---------------CGDTER------ARRLFGEMPERNVGSWNAVVGGYSKLGH 238

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  LF+LMP+R+V +W +MI  Y +NG    A++L   M  +    +    TSIL++
Sbjct: 239 VDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSA 298

Query: 250 CE--GMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVNSARLA 299
           C   G L+     HA   R     +  L         KC C            +++A   
Sbjct: 299 CAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGC------------IDTAFGV 346

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  +  K++ SW AM+   + HGHGF    LF +M  +G  P++ITFV VLS CSH G V
Sbjct: 347 FNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSV 406

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E+G K FN M + +   P+ EHY C+ DIL R G + EA  ++  MP  E + V+ GALL
Sbjct: 407 EEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPL-EPNVVIWGALL 465

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VK 477
            AC++HG   + + +   + +L     G YVL +N+ AA+ +W+E  + RK M++    K
Sbjct: 466 NACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEK 525

Query: 478 KVASFSQIEVKGKDHTLLAPMR 499
           K+  +S IE+    H   A  R
Sbjct: 526 KIPGYSSIELDSVVHDFFAEDR 547



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 157/326 (48%), Gaps = 37/326 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A  LFDEM   + V+  +MIT      D  +A  LF  MPE  RN+ + +A++ G
Sbjct: 175 GSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPE--RNVGSWNAVVGG 232

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
           Y K G VD AR +FD + E +V SW S+IS Y +  +  E   LF  M L     + +  
Sbjct: 233 YSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIII 292

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
           T+++  CA    I  L++  W  +   ++R   +KL  + F+           A++  Y 
Sbjct: 293 TSILSACAQ---IGALDMGRW--IHAYMKR---SKLRNDVFLD---------TALVDMYA 335

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G +  A  +FN MP++N+ +WNAM+   A +G   AA++L   M  +   PN+ T  +
Sbjct: 336 KCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVA 395

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-------VNSARL 298
           +L++C        +H  ++  G+++   +  +         +G  +D       +N A+ 
Sbjct: 396 VLSAC--------SHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKE 447

Query: 299 AFERLEAK-DVVSWTAMILAYSNHGH 323
               +  + +VV W A++ A   HG+
Sbjct: 448 MIRTMPLEPNVVIWGALLNACKVHGY 473


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 253/479 (52%), Gaps = 55/479 (11%)

Query: 57  NIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLF 112
           ++    +++D Y K    G VD++RKVF+++ E NV SWT++I+ Y ++ + D E   LF
Sbjct: 265 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 324

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            +M       N  S+++V+  C +                  L      +    Y V++ 
Sbjct: 325 CKMISGHIRPNHFSFSSVLKACGN------------------LSDPYTGEQVYSYAVKLG 366

Query: 171 NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              +    N++I+ Y  +G M  A + F+++ ++N+ ++NA++D YA+N     A  L N
Sbjct: 367 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 426

Query: 230 LMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            +  +    +  T  S+L+   S   M +    H   ++ G++       +C C+ +   
Sbjct: 427 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN-----QCICNALISM 481

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    ++ +A   F  +E ++V+SWT+MI  ++ HG   +   +F +ML++GTKP+EIT+
Sbjct: 482 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 541

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH G++ +G+K FN M + +G  PR EHY+C+ D+L R+G + EAM  ++ MP
Sbjct: 542 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 601

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               D +V   LLGACR+HG+  +  +  E ++E +P    AY+L +N+HA+ G+W +  
Sbjct: 602 LMA-DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 660

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
           ++RK M ER + K A  S IEV+ + H                     L + ++EMGY+
Sbjct: 661 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 719



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 186/416 (44%), Gaps = 49/416 (11%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVA 60
            G++  A    D M+Q    PD  + + ++   +R  +    + + R + +S  + + V 
Sbjct: 4   VGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGN---VYSWTSLISGYFKARQVDEGRRLF-DRMP 116
            + +I  Y K G  + AR +F+ +  GN   + SW++++S +       +    F D + 
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGM--GNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121

Query: 117 LKL-KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           L    N   +  V+  C++       E+I    + TG                    D+ 
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY----------------LEADVC 165

Query: 176 AWNAMITAYVD-AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               +I  +V  +G++  A ++F+ MP+RN+ TW  MI R+A+ G    A+ L   M  S
Sbjct: 166 VGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELS 225

Query: 235 RFMPNETTCTSILTSCEGMLENMLA-----HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            ++P+  T +S+L++C  +   +LA     H+  IRLG   +  +   C+   ++     
Sbjct: 226 GYVPDRFTYSSVLSACTEL--GLLALGKQLHSRVIRLGLALDVCV--GCSLVDMYAKCAA 281

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH-GFQVFRLFARMLKSGTKPDEITFVG 348
              V+ +R  FE++   +V+SWTA+I AY   G    +   LF +M+    +P+  +F  
Sbjct: 282 DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 341

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMR 400
           VL  C +      G + +     +Y  K      +C+ + L     R+G++++A +
Sbjct: 342 VLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSLISMYARSGRMEDARK 392



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           D V  N +I+ Y   G+   A  +F  M  +R++ +W+AM+  +A N  E  A+     M
Sbjct: 60  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 119

Query: 232 FQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
            +  F PNE    +++ +C          + +   ++ G+  E  +   C    +F    
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY-LEADVCVGCELIDMFVKGS 178

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+ SA   F+++  +++V+WT MI  ++  G       LF  M  SG  PD  T+  
Sbjct: 179 G--DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSS 236

Query: 349 VLSDCSHAGLVEKGRKTFNLMSR-------AYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           VLS C+  GL+  G++  + + R         G      +  C AD     G V ++ +V
Sbjct: 237 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD-----GSVDDSRKV 291

Query: 402 VSKMPPH 408
             +MP H
Sbjct: 292 FEQMPEH 298



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 47/242 (19%)

Query: 26  VSCA--SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           V+C   S+I+++ R+  +  A   F  + E  +N+V+ +A++DGY K  + +EA  +F+E
Sbjct: 370 VNCVGNSLISMYARSGRMEDARKAFDILFE--KNLVSYNAIVDGYAKNLKSEEAFLLFNE 427

Query: 84  IYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA 139
           I +  +    +++ SL+SG      + +G ++  R+   LK           C  N LI+
Sbjct: 428 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL---LKGGYKSNQ----CICNALIS 480

Query: 140 KL-------------------EVISWTTMCTGLERNAMTKLAREYFVQM------PNKDI 174
                                 VISWT+M TG  ++     A E F +M      PN+  
Sbjct: 481 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE-- 538

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRN-----VWTWNAMIDRYARNGPEGAAMKLLN 229
           + + A+++A    G +++  + FN M + +     +  +  M+D   R+G    AM+ +N
Sbjct: 539 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 598

Query: 230 LM 231
            M
Sbjct: 599 SM 600



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIV 59
           S +   G ++ A ++F+EM   + +S  SMIT F ++    +A  +F  M E  ++ N +
Sbjct: 480 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDR 114
              A++      G + E +K F+ +Y+ +     +  +  ++    ++  + E     + 
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 599

Query: 115 MPLKLKNVVSWTTVVLGCAHNG 136
           MPL + + + W T++  C  +G
Sbjct: 600 MPL-MADALVWRTLLGACRVHG 620


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 224/434 (51%), Gaps = 23/434 (5%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KL 119
           + ++  YV    +    KVFD I + NV +WT LI+GY K  Q  E  ++F+ M      
Sbjct: 143 TGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVE 202

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N ++    ++ CAH+     ++   W           + K   + F+   N +I+   A
Sbjct: 203 PNEITMVNALIACAHS---RDIDTGRWV-------HQRIRKAGYDPFMSTSNSNIILATA 252

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A +LFN MPQRN+ +WN+MI+ Y +      A+ L   M+ S   P+
Sbjct: 253 ILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPD 312

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           + T  S+L+ C     +      HA  ++ G   + SL       Y         ++ +A
Sbjct: 313 KATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMY-----AKTGELGNA 367

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSH 355
           +  F  L+ KDVV WT+MI   + HGHG +   +F  M + S   PD IT++GVL  CSH
Sbjct: 368 QKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSH 427

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            GLVE+ +K F LM+  YG  P  EHY C+ D+L RAG  +EA R++  M   + +  + 
Sbjct: 428 VGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTV-QPNIAIW 486

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-R 474
           GALL  C++H +V +A+ +  RL EL+P  SG ++L +N++A  G W+E    RK M+ +
Sbjct: 487 GALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHK 546

Query: 475 RVKKVASFSQIEVK 488
           R+ K    S +E+K
Sbjct: 547 RITKTIGHSSVEMK 560



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 165/407 (40%), Gaps = 52/407 (12%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKA--GRVDEARKVFDEIYEGNVYSWTSLIS 97
           +L K   L    P + ++I+  S +ID  V +  G ++ A  V  +I+  +VY W S+I 
Sbjct: 19  ELKKLHGLIVTTP-TIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIR 77

Query: 98  GYFKARQVDEGRRLFDRM------------PLKLKNVVSWTTVVLG-CAHNGLIAKLEVI 144
           G+  +        L+ +M            P  LK          G C H+ ++      
Sbjct: 78  GFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVK----- 132

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                 +G E +A T                    ++  YV   +M    ++F+ +P+ N
Sbjct: 133 ------SGFEADAYTA-----------------TGLLHMYVSCADMKSGLKVFDNIPKWN 169

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHA 261
           V  W  +I  Y +N     A+K+   M      PNE T  + L +C     +      H 
Sbjct: 170 VVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQ 229

Query: 262 LAIRLGFE--QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
              + G++    TS +       +   +     +  AR  F ++  +++VSW +MI AY+
Sbjct: 230 RIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYN 289

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +    +   LF  M  SG  PD+ TF+ VLS C+H   +  G+     + +  G     
Sbjct: 290 QYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKT-GIATDI 348

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              + L D+  + G++  A ++ S +   ++D V+  +++    +HG
Sbjct: 349 SLATALLDMYAKTGELGNAQKIFSSL--QKKDVVMWTSMINGLAMHG 393



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 121/267 (45%), Gaps = 35/267 (13%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRA---------MPESQRNI 58
           EA K+F++MS    +P+ ++  + +     + D+     + +          M  S  NI
Sbjct: 188 EALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNI 247

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +  +A+++ Y K GR+  AR +F+++ + N+ SW S+I+ Y +  +  E   LF  M   
Sbjct: 248 ILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTS 307

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               +  ++ +V+  CAH   +A  + +    + TG+                   DI  
Sbjct: 308 GVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIA-----------------TDISL 350

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SR 235
             A++  Y   G +  A ++F+ + +++V  W +MI+  A +G    A+ +   M + S 
Sbjct: 351 ATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSS 410

Query: 236 FMPNETTCTSILTSCE--GMLENMLAH 260
            +P+  T   +L +C   G++E    H
Sbjct: 411 LVPDHITYIGVLFACSHVGLVEEAKKH 437



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 4/170 (2%)

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           M ++ T  S+L  C+ M E    H L +     +      K     V  ++G   D+N A
Sbjct: 1   MIHQNTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFG---DINYA 57

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L   ++    V  W +MI  + N  +      L+ +M+++G  PD  TF  VL  C   
Sbjct: 58  DLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVI 117

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              + G+   + + ++ GF+  A   + L  +      +K  ++V   +P
Sbjct: 118 ADQDCGKCIHSCIVKS-GFEADAYTATGLLHMYVSCADMKSGLKVFDNIP 166


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 262/514 (50%), Gaps = 58/514 (11%)

Query: 4   FGCT--GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           F C+    +  A  +FDE+  PD     +MI  +L + +  ++ +LF  M   Q  I  +
Sbjct: 46  FACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQM-RHQECIPID 104

Query: 62  SAMIDGYVKA-GRVDE---ARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  +   ++A GR+ +    +K+  ++ +     +++  T+LI  Y K   ++  R + D
Sbjct: 105 SYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILD 164

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            M                       A  +++ +  +     R     LA + F +MP +D
Sbjct: 165 EM-----------------------AHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERD 201

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+WN MI  +   G++  A +LF+   +R++ +W++MI  YA+      A++L + M  
Sbjct: 202 LVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQL 261

Query: 234 SRFMPNETTCTSILTSCEGM----LENMLAHALA---IRLGFEQETSLT---YKCTCHYV 283
           +  +P++ T  S+L++C  +    +  M+   +    I +  +  TSL     KC     
Sbjct: 262 ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCG---- 317

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                   D++++   F  +  +DV +W+AMI+  +NHG G      F++M+    KP++
Sbjct: 318 --------DIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPND 369

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TF+GVLS CSH GLV++G   F  MS+ Y   P+ EHY C+ DIL RAG+++EAM ++ 
Sbjct: 370 VTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIK 429

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P   D +V  ALLGACR++ +V +A+     L+EL+P   G YVL +N+++   EWD
Sbjct: 430 SM-PFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWD 488

Query: 464 EFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           +   VR+ M+   ++KV   S IEV    H  +A
Sbjct: 489 KVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVA 522


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 253/479 (52%), Gaps = 55/479 (11%)

Query: 57  NIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLF 112
           ++    +++D Y K    G VD++RKVF+++ E NV SWT++I+ Y ++ + D E   LF
Sbjct: 283 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 342

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            +M       N  S+++V+  C +                  L      +    Y V++ 
Sbjct: 343 CKMISGHIRPNHFSFSSVLKACGN------------------LSDPYTGEQVYSYAVKLG 384

Query: 171 NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              +    N++I+ Y  +G M  A + F+++ ++N+ ++NA++D YA+N     A  L N
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 444

Query: 230 LMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            +  +    +  T  S+L+   S   M +    H   ++ G++       +C C+ +   
Sbjct: 445 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN-----QCICNALISM 499

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    ++ +A   F  +E ++V+SWT+MI  ++ HG   +   +F +ML++GTKP+EIT+
Sbjct: 500 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 559

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH G++ +G+K FN M + +G  PR EHY+C+ D+L R+G + EAM  ++ MP
Sbjct: 560 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 619

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               D +V   LLGACR+HG+  +  +  E ++E +P    AY+L +N+HA+ G+W +  
Sbjct: 620 LMA-DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 678

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
           ++RK M ER + K A  S IEV+ + H                     L + ++EMGY+
Sbjct: 679 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 737



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 186/416 (44%), Gaps = 49/416 (11%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVA 60
            G++  A    D M+Q    PD  + + ++   +R  +    + + R + +S  + + V 
Sbjct: 22  VGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 81

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGN---VYSWTSLISGYFKARQVDEGRRLF-DRMP 116
            + +I  Y K G  + AR +F+ +  GN   + SW++++S +       +    F D + 
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGM--GNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139

Query: 117 LKL-KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           L    N   +  V+  C++       E+I    + TG                    D+ 
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY----------------LEADVC 183

Query: 176 AWNAMITAYVD-AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               +I  +V  +G++  A ++F+ MP+RN+ TW  MI R+A+ G    A+ L   M  S
Sbjct: 184 VGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELS 243

Query: 235 RFMPNETTCTSILTSCEGMLENMLA-----HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            ++P+  T +S+L++C  +   +LA     H+  IRLG   +  +   C+   ++     
Sbjct: 244 GYVPDRFTYSSVLSACTEL--GLLALGKQLHSRVIRLGLALDVCV--GCSLVDMYAKCAA 299

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH-GFQVFRLFARMLKSGTKPDEITFVG 348
              V+ +R  FE++   +V+SWTA+I AY   G    +   LF +M+    +P+  +F  
Sbjct: 300 DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 359

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMR 400
           VL  C +      G + +     +Y  K      +C+ + L     R+G++++A +
Sbjct: 360 VLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSLISMYARSGRMEDARK 410



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           D V  N +I+ Y   G+   A  +F  M  +R++ +W+AM+  +A N  E  A+     M
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 232 FQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
            +  F PNE    +++ +C          + +   ++ G+  E  +   C    +F    
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGY-LEADVCVGCELIDMFVKGS 196

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+ SA   F+++  +++V+WT MI  ++  G       LF  M  SG  PD  T+  
Sbjct: 197 G--DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSS 254

Query: 349 VLSDCSHAGLVEKGRKTFNLMSR-------AYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           VLS C+  GL+  G++  + + R         G      +  C AD     G V ++ +V
Sbjct: 255 VLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD-----GSVDDSRKV 309

Query: 402 VSKMPPH 408
             +MP H
Sbjct: 310 FEQMPEH 316



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 47/242 (19%)

Query: 26  VSCA--SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           V+C   S+I+++ R+  +  A   F  + E  +N+V+ +A++DGY K  + +EA  +F+E
Sbjct: 388 VNCVGNSLISMYARSGRMEDARKAFDILFE--KNLVSYNAIVDGYAKNLKSEEAFLLFNE 445

Query: 84  IYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA 139
           I +  +    +++ SL+SG      + +G ++  R+   LK           C  N LI+
Sbjct: 446 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL---LKGGYKSNQ----CICNALIS 498

Query: 140 KL-------------------EVISWTTMCTGLERNAMTKLAREYFVQM------PNKDI 174
                                 VISWT+M TG  ++     A E F +M      PN+  
Sbjct: 499 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE-- 556

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRN-----VWTWNAMIDRYARNGPEGAAMKLLN 229
           + + A+++A    G +++  + FN M + +     +  +  M+D   R+G    AM+ +N
Sbjct: 557 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 616

Query: 230 LM 231
            M
Sbjct: 617 SM 618



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIV 59
           S +   G ++ A ++F+EM   + +S  SMIT F ++    +A  +F  M E  ++ N +
Sbjct: 498 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDR 114
              A++      G + E +K F+ +Y+ +     +  +  ++    ++  + E     + 
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 617

Query: 115 MPLKLKNVVSWTTVVLGCAHNG 136
           MPL + + + W T++  C  +G
Sbjct: 618 MPL-MADALVWRTLLGACRVHG 638


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 246/490 (50%), Gaps = 64/490 (13%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           ARKVFD+I E +  SWT++++GY K    D G+ L   M   +K +V++  ++ G  + G
Sbjct: 207 ARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMK-LVAYNAMISGYVNCG 265

Query: 137 LIAKLEVISWTTMCTGLE---------------------------------------RNA 157
           L  +   +    + +G+E                                        N+
Sbjct: 266 LYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNS 325

Query: 158 MTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +  L         AR  F +MP KD+V+WNA+++ YV +G++ +A  +F  M ++N+ +W
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR 265
             MI   A NG     +KL + M +  F P +   +  + SC            HA  ++
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVK 445

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +GF+  +SL+       ++   G    V  A+  F  +   D VSW A+I A   HGHG 
Sbjct: 446 IGFD--SSLSAGNALITMYAKCGV---VEEAQQVFRTMPCLDSVSWNALIAALGQHGHGV 500

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   ++  MLK G +PD ITF+ VL+ CSHAGLV++GRK FN M   Y   P A+HY+ L
Sbjct: 501 EAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARL 560

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L R+G+  EA  ++  + P +    +  ALL  CR+HG++ +     ++L  L P  
Sbjct: 561 IDLLCRSGKFSEAESIIESL-PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH 619

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR 499
            G Y+L +N++AA G+W+E A+VRK M +R VKK  + S IE++ + HT L      P  
Sbjct: 620 DGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEA 679

Query: 500 EMGYVVLKEV 509
           E  Y  L+++
Sbjct: 680 EAVYKYLQDL 689



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 196/465 (42%), Gaps = 74/465 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           + ++  A +LFDE+S+PD ++  +M++ +  + D+  A ++F   P S R+ V  +AMI 
Sbjct: 62  SSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMIT 121

Query: 67  GYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           G+        A  +F     E ++ + +++ S+++G   A  VD+ ++        LK+ 
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGL--ALVVDDEKQCVQFHAAALKSG 179

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
             + T V     N L      +S  + C      ++   AR+ F  +P KD  +W  M+T
Sbjct: 180 AGYVTSV----SNAL------VSVYSRCA--SSPSLLHSARKVFDDIPEKDERSWTTMMT 227

Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
            YV  G      EL   M +   +  +NAMI  Y   G    A++++  M  S    +E 
Sbjct: 228 GYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEF 287

Query: 242 TCTSILTSCEGMLENMLA---HALAIR---LGFEQETSLT---YKCTCHYVFWDWGFQLD 292
           T  S++ +C       L    HA  +R     F  + SL    YKC              
Sbjct: 288 TYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCG------------K 335

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGH----------------------------- 323
            N AR  FE++ AKD+VSW A++  Y + GH                             
Sbjct: 336 FNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAEN 395

Query: 324 --GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
             G +  +LF+ M + G +P +  F G +  C+  G    G++ F+      GF      
Sbjct: 396 GFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-FHAQLVKIGFDSSLSA 454

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + L  +  + G V+EA +V   MP    D V   AL+ A   HG
Sbjct: 455 GNALITMYAKCGVVEEAQQVFRTMPC--LDSVSWNALIAALGQHG 497


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 243/452 (53%), Gaps = 22/452 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR++FD + + +  S+ S+I+GY K   ++  R LFD MP
Sbjct: 148 DLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMP 207

Query: 117 LKLKNVVSWTTVVLGCAHNG--------LIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A           L A++   ++ISW +M  G  ++   + A+  
Sbjct: 208 REMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGL 267

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V    MI  Y   G + QA  LF+ MP R+V  +N+M+  Y +N     A+
Sbjct: 268 FDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEAL 327

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ N M  +S   P+ETT   IL++   +    L+ A  + L   E++  L  K     +
Sbjct: 328 EIFNDMEKESHLSPDETTLVIILSAIAQL--GRLSKATDMHLYIVEKQFYLGGKLGVALI 385

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A L FE +E K +  W AMI   + HG G   F +  ++ +    P
Sbjct: 386 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIP 442

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 443 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 502

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 503 IEEMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGM 561

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           W +  +VR  M ER+++K+   S IE+ G+ H
Sbjct: 562 WKDVRRVRTMMKERKIEKIPGCSWIELDGRVH 593



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 176/395 (44%), Gaps = 69/395 (17%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV----- 59
           GC G    A ++FD M Q D VS  SMI  +++   +  A  LF  MP   +N++     
Sbjct: 163 GCLGF---ARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSM 219

Query: 60  ------------------AE---------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                             AE         ++MIDGYVK GR+++A+ +FD +   +V + 
Sbjct: 220 ISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTC 279

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVIS------ 145
            ++I GY K   V + + LFD+MP  L++VV++ +++ G   N   +  LE+ +      
Sbjct: 280 ATMIDGYAKLGFVHQAKTLFDQMP--LRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKES 337

Query: 146 -----WTTMCTGLERNAMTKLAR-----EYFVQMPNKDIVAWN----AMITAYVDAGNMA 191
                 TT+   L  +A+ +L R     +  + +  K          A+I  Y   G++ 
Sbjct: 338 HLSPDETTLVIIL--SAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQ 395

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC- 250
            A  +F  +  +++  WNAMI   A +G   +A  +L  + +   +P++ T   +L +C 
Sbjct: 396 HAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACS 455

Query: 251 -EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
             G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV
Sbjct: 456 HSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN--LIEEMPIEPNDV 513

Query: 309 VSWTAMILAYSNHGHGFQVFRLFAR--MLKSGTKP 341
           + W   + A S+H   F+   L A+  +L++G  P
Sbjct: 514 I-WRTFLTACSHHKE-FETGELVAKHLILQAGYNP 546


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/528 (31%), Positives = 261/528 (49%), Gaps = 55/528 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V  A ++F+E    D VS  +++  +++  ++ +AE +F  MPE  RN +A ++
Sbjct: 150 YAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPE--RNTIASNS 207

Query: 64  MIDGYVKAGRVDEARKVFDEIY--EGNVYSWTSLISGYFKARQVDEGRRLFDRMP----- 116
           MI  + + G V++AR++F+ +   E ++ SW++++S Y +    +E   LF  M      
Sbjct: 208 MIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVA 267

Query: 117 -------LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------- 161
                    L        V +G   +GL  K+ V  + ++     +NA+  L        
Sbjct: 268 VDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSL-----KNALIHLYSSCGEIV 322

Query: 162 -AREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            AR  F       D+++WN+MI+ Y+  G++  A  LF  MP+++V +W+AMI  YA++ 
Sbjct: 323 DARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHE 382

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLT- 275
               A+ L   M      P+ET   S +++C  +    L    HA   R   +    L+ 
Sbjct: 383 CFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILST 442

Query: 276 ------YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
                  KC C            V +A   F  +E K V +W A+IL  + +G   Q   
Sbjct: 443 TLIDMYMKCGC------------VENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLN 490

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           +FA M K+GT P+EITF+GVL  C H GLV  GR  FN M   +  +   +HY C+ D+L
Sbjct: 491 MFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLL 550

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            RAG +KEA  ++  MP    D    GALLGACR H D  M + +G +LI+LQP   G +
Sbjct: 551 GRAGLLKEAEELIDSMPM-APDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFH 609

Query: 450 VLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           VL +N++A++G W    ++R  M +  V K    S IE  G  H  LA
Sbjct: 610 VLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLA 657



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 149/353 (42%), Gaps = 56/353 (15%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           ++G+VY   +L++ Y     V   RR+F+  P+                       L+++
Sbjct: 136 FDGDVYVRNTLMNLYAVCGSVGSARRVFEESPV-----------------------LDLV 172

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM--PQ 202
           SW T+  G  +    + A   F  MP ++ +A N+MI  +   G + +A  +FN +   +
Sbjct: 173 SWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRE 232

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA--- 259
           R++ +W+AM+  Y +N     A+ L   M  S    +E    S L++C  +L   +    
Sbjct: 233 RDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWV 292

Query: 260 HALAIRLGFEQETSLTYKCTCHY-----------VFWDWGFQLD---------------- 292
           H LA+++G E   SL       Y           +F D G  LD                
Sbjct: 293 HGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGS 352

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A + F  +  KDVVSW+AMI  Y+ H    +   LF  M   G +PDE   V  +S 
Sbjct: 353 IQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISA 412

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           C+H   ++ G+     +SR    +      + L D+  + G V+ A+ V   M
Sbjct: 413 CTHLATLDLGKWIHAYISRN-KLQVNVILSTTLIDMYMKCGCVENALEVFYAM 464


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 263/552 (47%), Gaps = 71/552 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVF----LRNH---------------DLPKAEAL 47
            G    A +LFD + QPDP +C+++I+      L N                D+P   A 
Sbjct: 111 VGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAA 170

Query: 48  FRAMPES------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
            +A   S                    ++   +A+I  Y K   V+ AR+VFD++   +V
Sbjct: 171 AKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 230

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------- 134
            SWTSL S Y K     +G  +F  M       N ++ ++++  CA              
Sbjct: 231 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGF 290

Query: 135 ---NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
              +G++  L V S   + +   +    + AR  F  MP++D+V+WN ++TAY       
Sbjct: 291 AVRHGMVVNLFVCS--ALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYE 348

Query: 192 QASELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           +   LF  M +  V     TWNA+I     NG    A+++   M +  F PNE T +SIL
Sbjct: 349 KGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSIL 408

Query: 248 TSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +C   E +      H    R    +   LT      Y++   G   D+N +R  F+ + 
Sbjct: 409 PACSFSENLRMGKEIHCYVFR--HWKVGDLTSTTALLYMYAKCG---DLNLSRNVFDMMR 463

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KDVV+W  MI+A + HG+G +   LF +ML S  +P+ +TF GVLS CSH+ LVE+G +
Sbjct: 464 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 523

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            FN M R +  +P A HYSC+ DI  RAG++ EA + +  M P E      GALL ACR+
Sbjct: 524 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGM-PMEPTASAWGALLAACRV 582

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFS 483
           + +V +A    ++L E++P++ G YV   N+      W E +QVR  M ER + K    S
Sbjct: 583 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 642

Query: 484 QIEVKGKDHTLL 495
            ++V  K HT +
Sbjct: 643 WLQVGNKVHTFV 654



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 25/252 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I   ++ G+  +A +LF+ +PQ +  T + +I     +G    A+K+ + + +    P+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQE----TSLTY---KCTCHYVFWDWGF 289
                +   +C      L     H  A R G   +     +L +   KC C         
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC--------- 214

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  AR  F+ L  +DVVSWT++   Y   G   +   +F  M  SG KP+ +T   +
Sbjct: 215 ---VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI 271

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+    ++ G++      R +G        S L  +  +   V+EA R+V  + PH 
Sbjct: 272 LPACAELKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPH- 328

Query: 410 RDHVVLGALLGA 421
           RD V    +L A
Sbjct: 329 RDVVSWNGVLTA 340


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 171/550 (31%), Positives = 263/550 (47%), Gaps = 67/550 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVF----LRNH---------------DLPKAEAL 47
            G    A +LFD + QPDP +C+++I+      L N                D+P   A 
Sbjct: 25  VGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAA 84

Query: 48  FRAMPES------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
            +A   S                    ++   +A+I  Y K   V+ AR+VFD++   +V
Sbjct: 85  AKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 144

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH----------NGL 137
            SWTSL S Y K     +G  +F  M       N ++ ++++  CA           +G 
Sbjct: 145 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGF 204

Query: 138 IAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             +  ++    +C+ L     +    + AR  F  MP++D+V+WN ++TAY       + 
Sbjct: 205 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKG 264

Query: 194 SELFNLMPQRNV----WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
             LF  M +  V     TWNA+I     NG    A+++   M +  F PNE T +SIL +
Sbjct: 265 FSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPA 324

Query: 250 C---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C   E +      H    R    +   LT      Y++   G   D+N +R  F+ +  K
Sbjct: 325 CSFSENLRMGKEIHCYVFR--HWKVGDLTSTTALLYMYAKCG---DLNLSRNVFDMMRRK 379

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DVV+W  MI+A + HG+G +   LF +ML S  +P+ +TF GVLS CSH+ LVE+G + F
Sbjct: 380 DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF 439

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           N M R +  +P A HYSC+ DI  RAG++ EA + +  M P E      GALL ACR++ 
Sbjct: 440 NSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGM-PMEPTASAWGALLAACRVYK 498

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQI 485
           +V +A    ++L E++P++ G YV   N+      W E +QVR  M ER + K    S +
Sbjct: 499 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558

Query: 486 EVKGKDHTLL 495
           +V  K HT +
Sbjct: 559 QVGNKVHTFV 568



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 25/252 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I   ++ G+  +A +LF+ +PQ +  T + +I     +G    A+K+ + + +    P+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQE----TSLTY---KCTCHYVFWDWGF 289
                +   +C      L     H  A R G   +     +L +   KC C         
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC--------- 128

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  AR  F+ L  +DVVSWT++   Y   G   +   +F  M  SG KP+ +T   +
Sbjct: 129 ---VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSI 185

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+    ++ G++      R +G        S L  +  +   V+EA R+V  + PH 
Sbjct: 186 LPACAELKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPH- 242

Query: 410 RDHVVLGALLGA 421
           RD V    +L A
Sbjct: 243 RDVVSWNGVLTA 254


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 161/505 (31%), Positives = 263/505 (52%), Gaps = 38/505 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           +PV   +++ V+ R  D+  A  +F  +  S +N+++ + MI GY ++G V +A+++FD 
Sbjct: 331 NPVVVNALVDVYRRCGDMGGAAKIF--LKFSVKNVLSCNTMIVGYCESGDVSKAKELFDC 388

Query: 84  I----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNG 136
           +     E  + SW S+ISGY +    DE   +F  M ++     +  +  +V+  CA   
Sbjct: 389 MDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTI 448

Query: 137 LIAKLEVISWTTMCTGLERN-----AMTKL---------AREYFVQMPNKDIVAWNAMIT 182
            + + + I    +  GL+ +     A+ ++         A+  F ++  KD+  WNA+I+
Sbjct: 449 SLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALIS 508

Query: 183 AYVDAGNMAQASELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            Y  +  + +   L   M       N++TWN+++     N      M+L + M  S+  P
Sbjct: 509 GYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRP 568

Query: 239 NETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +  T   IL +C  +  LE    AHA +I+ G++ +  +       Y          +  
Sbjct: 569 DIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCG-----SLKY 623

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+LA++R+   ++VS  AM+ A + HGHG +   LF  ML  G  PD +TF+ VLS C H
Sbjct: 624 AQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVH 683

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            G VE G + F+LM   Y  KP  +HY+ + D+L R+GQ+ EA  ++ KMP  E D V+ 
Sbjct: 684 VGSVETGCEFFDLMGY-YNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPV-ECDSVLW 741

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           GALLG C  HG++ + +   ERLIEL+P++SG YVL AN+HA    W + A+VR  M +R
Sbjct: 742 GALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDR 801

Query: 475 RVKKVASFSQIEVKGKDHTLLAPMR 499
            + K    S IE K + H+ LA  R
Sbjct: 802 GMHKSPGCSWIEDKNEIHSFLACDR 826



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 195/473 (41%), Gaps = 119/473 (25%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           NI   +A+ID Y K G +D+A+KV  ++ E +  +W S+I+       V E     ++M 
Sbjct: 194 NIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMK 253

Query: 117 ---LKLKNVVSWTTVVLGCAHN----------------GLIAKLEVISWT-TMCTGLER- 155
                + NVVSW+ V+ G A N                GL+   + ++     C  L+R 
Sbjct: 254 SLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRL 313

Query: 156 ----------------------NAMTKLAR---------EYFVQMPNKDIVAWNAMITAY 184
                                 NA+  + R         + F++   K++++ N MI  Y
Sbjct: 314 DLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGY 373

Query: 185 VDAGNMAQASELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSRFMPN 239
            ++G++++A ELF+ M     +R + +WN++I  Y RN     A  +  N++ +    P+
Sbjct: 374 CESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPD 433

Query: 240 ETTCTSILTSCEGML---ENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
             T  S+LT+C   +   +    HA AI  G + +T        +  KC           
Sbjct: 434 SFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQ---------- 483

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAY--SNH------------GHGFQ--------- 326
             D+ +A++AF+ +  KDV +W A+I  Y  SN             G G+          
Sbjct: 484 --DLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSI 541

Query: 327 ------------VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
                         +LF+ M  S  +PD  T   +L  CS    +E+G++  +  S   G
Sbjct: 542 LAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQA-HAHSIKCG 600

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMP-PHERDHVVLGALLGACRLHG 426
           +       + L D+  + G +K A     ++  P+   H    A+L AC +HG
Sbjct: 601 YDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSH---NAMLTACAMHG 650



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 67/365 (18%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY------------FKARQVDEG 108
           ++ ++  Y + G + +A  +F+ +   N++SW +++S Y            F+  Q D  
Sbjct: 97  DTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGV 156

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAM 158
              F   PL  K      +V LG   +GL+ K            +I     C  L+    
Sbjct: 157 ELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDD--- 213

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVWTWNAMID 213
              A++  V+MP +D V WN++ITA    G + +A E    M        NV +W+A+I 
Sbjct: 214 ---AKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIG 270

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQ 270
            +A+NG +  A+++L  M     +PN  T   +L +C  +    L    H    R  F  
Sbjct: 271 GFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFIS 330

Query: 271 ET--------------------------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
                                       S+    +C+ +   +    DV+ A+  F+ ++
Sbjct: 331 NPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMD 390

Query: 305 A----KDVVSWTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLV 359
                + ++SW ++I  Y  +    + F +F  ML + G +PD  T   VL+ C+    +
Sbjct: 391 VLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISL 450

Query: 360 EKGRK 364
            +G++
Sbjct: 451 RQGKE 455



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 9/229 (3%)

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           N +   S+L SC+        HA  I+ GF+ +  +  K    Y          +  A  
Sbjct: 61  NTSKYASVLDSCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGL-----LKDADF 115

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            FE +  +++ SW A++  Y +HG   + F LF  +   G + D   F  V   CS  G 
Sbjct: 116 LFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGS 175

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           VE GR+   L+ + + F       + L D+  + G + +A +V+ KMP  ERD V   ++
Sbjct: 176 VELGRQLHGLVIK-FRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMP--ERDSVTWNSV 232

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA-ARGEWDEFA 466
           + AC  +G V  A    E++  L  S       SA +   A+  +DE A
Sbjct: 233 ITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEA 281



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 15/146 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRNIVAE 61
           G +K A   +D +S P+ VS  +M+T    +    +  +LF+ M      P+     V  
Sbjct: 619 GSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDH----VTF 674

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYS----WTSLISGYFKARQVDEGRRLFDRMPL 117
            +++   V  G V+   + FD +   NV      +TS++    ++ Q+ E   L  +MP+
Sbjct: 675 LSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPV 734

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +  +V+ W  ++ GC  +G I   E+
Sbjct: 735 ECDSVL-WGALLGGCVTHGNIELGEI 759


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/522 (31%), Positives = 249/522 (47%), Gaps = 61/522 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + +A K+FD     D VS  +++  +++  D+ +A  +F  MPE  R   A 
Sbjct: 146 SMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPE--RGAAAV 203

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----P 116
           S+M+  + + G VDEARKVFD +   +V++WT++IS + +  +  E   LF  M     P
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----------RNAMTKL---- 161
           +    +V    VV  CA      +LEV     MC GL            +NA+  +    
Sbjct: 264 VDEAVMV---CVVAACA------RLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314

Query: 162 -----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                AR  F      D  +WN+MI  Y+  G++  A ELF +MP ++  +W  MI    
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---------EGMLENMLAHALAIRLG 267
           +N     A+ + N M      P+E T  S++++C         + M E +  H   I + 
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVI 434

Query: 268 FEQETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
                   Y KC C            + SA   F+ +E +    W A+I+  + +G   +
Sbjct: 435 LGTSLIDMYMKCGC------------LESALEVFDTMEERGTPCWNAVIVGLAMNGLVMK 482

Query: 327 VFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
              +F+ M  S T  P+EITF GVLS C HAGLVE+G+  F LM   Y   P   HY C+
Sbjct: 483 SLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCM 542

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG VKEA  ++  M P   D    GALLG+C  HGD  + + +G +L+ L P  
Sbjct: 543 VDLLGRAGYVKEAENLIESM-PMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHH 601

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
            G + + +N++A+ G W     +R  M++  V K+   S +E
Sbjct: 602 DGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 253/479 (52%), Gaps = 55/479 (11%)

Query: 57  NIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLF 112
           ++    +++D Y K    G VD++RKVF+++ E NV SWT++I+ Y ++ + D E   LF
Sbjct: 85  DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF 144

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            +M       N  S+++V+  C +                  L      +    Y V++ 
Sbjct: 145 CKMISGHIRPNHFSFSSVLKACGN------------------LSDPYTGEQVYSYAVKLG 186

Query: 171 NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              +    N++I+ Y  +G M  A + F+++ ++N+ ++NA++D YA+N     A  L N
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 246

Query: 230 LMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            +  +    +  T  S+L+   S   M +    H   ++ G++       +C C+ +   
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN-----QCICNALISM 301

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    ++ +A   F  +E ++V+SWT+MI  ++ HG   +   +F +ML++GTKP+EIT+
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH G++ +G+K FN M + +G  PR EHY+C+ D+L R+G + EAM  ++ MP
Sbjct: 362 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               D +V   LLGACR+HG+  +  +  E ++E +P    AY+L +N+HA+ G+W +  
Sbjct: 422 LMA-DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 480

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
           ++RK M ER + K A  S IEV+ + H                     L + ++EMGY+
Sbjct: 481 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 539



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 19/220 (8%)

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A A ++F+ MP+RN+ TW  MI R+A+ G    A+ L   M  S ++P+  T +S+L++C
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 251 EGMLENMLA-----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
             +   +LA     H+  IRLG   +  +   C+   ++        V+ +R  FE++  
Sbjct: 62  TEL--GLLALGKQLHSRVIRLGLALDVCV--GCSLVDMYAKCAADGSVDDSRKVFEQMPE 117

Query: 306 KDVVSWTAMILAYSNHGH-GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +V+SWTA+I AY+  G    +   LF +M+    +P+  +F  VL  C +      G +
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 177

Query: 365 TFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMR 400
            +     +Y  K      +C+ + L     R+G++++A +
Sbjct: 178 VY-----SYAVKLGIASVNCVGNSLISMYARSGRMEDARK 212



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 33/235 (14%)

Query: 26  VSCA--SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           V+C   S+I+++ R+  +  A   F  + E  +N+V+ +A++DGY K  + +EA  +F+E
Sbjct: 190 VNCVGNSLISMYARSGRMEDARKAFDILFE--KNLVSYNAIVDGYAKNLKSEEAFLLFNE 247

Query: 84  IYEGNV----YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG 136
           I +  +    +++ SL+SG      + +G ++  R+     K    +    + +      
Sbjct: 248 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 307

Query: 137 LIAKLE---------VISWTTMCTGLERNAMTKLAREYFVQM------PNKDIVAWNAMI 181
           + A  +         VISWT+M TG  ++     A E F +M      PN+  + + A++
Sbjct: 308 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE--ITYVAVL 365

Query: 182 TAYVDAGNMAQASELFNLMPQRN-----VWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +A    G +++  + FN M + +     +  +  M+D   R+G    AM+ +N M
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F+++  +++V+WT MI  ++  G       LF  M  SG  PD  T+  VLS C+  GL+
Sbjct: 8   FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 67

Query: 360 EKGRKTFNLMSR-------AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
             G++  + + R         G      +  C AD     G V ++ +V  +MP H
Sbjct: 68  ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD-----GSVDDSRKVFEQMPEH 118



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIV 59
           S +   G ++ A ++F+EM   + +S  SMIT F ++    +A  +F  M E  ++ N +
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 359

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDR 114
              A++      G + E +K F+ +Y+ +     +  +  ++    ++  + E     + 
Sbjct: 360 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 419

Query: 115 MPLKLKNVVSWTTVVLGCAHNG 136
           MPL + + + W T++  C  +G
Sbjct: 420 MPL-MADALVWRTLLGACRVHG 440


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/550 (29%), Positives = 266/550 (48%), Gaps = 65/550 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G+++EA ++F+EM     VS   MI  +  +  + +A  LF  M +  RN+V  ++MI 
Sbjct: 182 SGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGD--RNVVTWTSMIS 239

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVV 123
           GY +AG V E   +F ++ E NV SWT++I G+       E   LF  M        N  
Sbjct: 240 GYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDE 299

Query: 124 SWTTVVLGCAHNGLI-------AKLEVISW------------------------------ 146
           ++ ++   CA  G         A L +  W                              
Sbjct: 300 TFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIF 359

Query: 147 ------------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                        +M  G  R    + A+  F  +P +D ++W +MI  Y + G +A+A 
Sbjct: 360 FRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKAC 419

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
            LFN MP R+   W  M+  + +N     A  L + M      P  +T + +L +   M 
Sbjct: 420 YLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMA 479

Query: 255 ---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
              +    H L ++  FE +  L       Y         ++  A   F ++ ++D++SW
Sbjct: 480 YLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCG-----EIGDAYSIFSKMISRDLISW 534

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +MI+ +S+HG   +  ++F  ML SGT P+ +TF+G+LS CSHAGL+ +G + F+ MS 
Sbjct: 535 NSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSD 594

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG-DVRM 430
            +  +P+ EHY C+ ++L RAG+V+EA   +SK+ P E D  + GALLG C     +  +
Sbjct: 595 VFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKL-PFEPDLTIWGALLGVCGFGMINTGV 653

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           A    +RL+EL P ++ A+V+  N+HA+ G+  E  Q+RK+M  + V+KV   S I +KG
Sbjct: 654 ARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKG 713

Query: 490 KDHTLLAPMR 499
           + +  L+  R
Sbjct: 714 EPYVFLSGDR 723



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 144/532 (27%), Positives = 236/532 (44%), Gaps = 89/532 (16%)

Query: 9   KVKEATKLFDEMSQP---DPVSC-ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           +++EA  + DEM      D V C  S+++ F +N  + +A ALF  MPE  RN+V  +AM
Sbjct: 56  RLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE--RNVVTYNAM 113

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           + GYV+ GR+ +A + F+E+ E NV SWTSL+ G   A ++ E R LF+ MP   +NVVS
Sbjct: 114 LSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMP--ERNVVS 171

Query: 125 WTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           W ++++G   +G + +             +SW  M  G   ++  + AR  F  M ++++
Sbjct: 172 WNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNV 231

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL-LNLMFQ 233
           V W +MI+ Y  AGN+ +   LF  MP+RNV +W AMI  +A NG    A+ L L +   
Sbjct: 232 VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGN 291

Query: 234 SRFMPNETTCTSILTSCEGMLENML-----AHALAIRLGFEQETSLTYKCTCH------- 281
               PN+ T  S+  +C G+    L     AH +     ++      +K   H       
Sbjct: 292 YDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGF 351

Query: 282 -----YVFWDWGFQLDVNS----------------ARLAFERLEAKDVVSWTAMILAYSN 320
                Y+F+      +  S                A+  F+ +  +D +SWT+MI  Y N
Sbjct: 352 MDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFN 411

Query: 321 HGH---GFQVFR----------------------------LFARMLKSGTKPDEITFVGV 349
            G       +F                             LF+ M   G  P   TF  +
Sbjct: 412 VGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSIL 471

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L        +++GR+ F+ +     F+      + L  +  + G++ +A  + SKM    
Sbjct: 472 LGAAGAMAYLDQGRQ-FHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMI--S 528

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAA 458
           RD +   +++     HG    A  + E ++     P+S +   +LSA  HA 
Sbjct: 529 RDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAG 580


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 253/479 (52%), Gaps = 55/479 (11%)

Query: 57  NIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLF 112
           ++    +++D Y K    G VD++RKVF+++ E NV SWT++I+ Y ++ + D E   LF
Sbjct: 90  DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF 149

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            +M       N  S+++V+  C +                  L      +    Y V++ 
Sbjct: 150 CKMISGHIRPNHFSFSSVLKACGN------------------LSDPYTGEQVYSYAVKLG 191

Query: 171 NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              +    N++I+ Y  +G M  A + F+++ ++N+ ++NA++D YA+N     A  L N
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 251

Query: 230 LMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            +  +    +  T  S+L+   S   M +    H   ++ G++       +C C+ +   
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN-----QCICNALISM 306

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    ++ +A   F  +E ++V+SWT+MI  ++ HG   +   +F +ML++GTKP+EIT+
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VLS CSH G++ +G+K FN M + +G  PR EHY+C+ D+L R+G + EAM  ++ MP
Sbjct: 367 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               D +V   LLGACR+HG+  +  +  E ++E +P    AY+L +N+HA+ G+W +  
Sbjct: 427 LMA-DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 485

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
           ++RK M ER + K A  S IEV+ + H                     L + ++EMGY+
Sbjct: 486 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 544



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 19/220 (8%)

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A A ++F+ MP+RN+ TW  MI R+A+ G    A+ L   M  S ++P+  T +S+L++C
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 251 EGMLENMLA-----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
             +   +LA     H+  IRLG   +  +   C+   ++        V+ +R  FE++  
Sbjct: 67  TEL--GLLALGKQLHSRVIRLGLALDVCV--GCSLVDMYAKCAADGSVDDSRKVFEQMPE 122

Query: 306 KDVVSWTAMILAYSNHGH-GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +V+SWTA+I AY+  G    +   LF +M+    +P+  +F  VL  C +      G +
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 182

Query: 365 TFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMR 400
            +     +Y  K      +C+ + L     R+G++++A +
Sbjct: 183 VY-----SYAVKLGIASVNCVGNSLISMYARSGRMEDARK 217



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 33/235 (14%)

Query: 26  VSCA--SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           V+C   S+I+++ R+  +  A   F  + E  +N+V+ +A++DGY K  + +EA  +F+E
Sbjct: 195 VNCVGNSLISMYARSGRMEDARKAFDILFE--KNLVSYNAIVDGYAKNLKSEEAFLLFNE 252

Query: 84  IYEGNV----YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG 136
           I +  +    +++ SL+SG      + +G ++  R+     K    +    + +      
Sbjct: 253 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 312

Query: 137 LIAKLE---------VISWTTMCTGLERNAMTKLAREYFVQM------PNKDIVAWNAMI 181
           + A  +         VISWT+M TG  ++     A E F +M      PN+  + + A++
Sbjct: 313 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE--ITYVAVL 370

Query: 182 TAYVDAGNMAQASELFNLMPQRN-----VWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +A    G +++  + FN M + +     +  +  M+D   R+G    AM+ +N M
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F+++  +++V+WT MI  ++  G       LF  M  SG  PD  T+  VLS C+  GL+
Sbjct: 13  FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 72

Query: 360 EKGRKTFNLMSR-------AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
             G++  + + R         G      +  C AD     G V ++ +V  +MP H
Sbjct: 73  ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD-----GSVDDSRKVFEQMPEH 123



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIV 59
           S +   G ++ A ++F+EM   + +S  SMIT F ++    +A  +F  M E  ++ N +
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 364

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDR 114
              A++      G + E +K F+ +Y+ +     +  +  ++    ++  + E     + 
Sbjct: 365 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 424

Query: 115 MPLKLKNVVSWTTVVLGCAHNG 136
           MPL + + + W T++  C  +G
Sbjct: 425 MPL-MADALVWRTLLGACRVHG 445


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/562 (30%), Positives = 270/562 (48%), Gaps = 69/562 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPES-QRNIVAESAMI 65
           G+V EA ++FDEM + D  +  +M++   RN     A  L  R + E    + V  S+++
Sbjct: 116 GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVL 175

Query: 66  DGYVKAGRVDEARKVFDEIY------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
              V  G  D A  +   +Y       G ++   +LI  Y K   + E   +F  M   L
Sbjct: 176 PMCVVLG--DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGM--AL 231

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK------- 172
           +++V+W +++      G +A    +    M +G+  + +T ++    V            
Sbjct: 232 RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV 291

Query: 173 ------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
                       DI+A NAM+  Y     +  A ++F+ +P R+V +WN +I  Y +NG 
Sbjct: 292 HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGL 351

Query: 221 EGAAMKLLNLMFQSRFM-PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTY 276
              A+++ N M     + P + T  S+L +     G+ + M  HAL+I+ G   +    Y
Sbjct: 352 ANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDV---Y 408

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
             TC    +    +L    A   FE +  +    W A+I     HGHG +   LF++M +
Sbjct: 409 VTTCLIDLYAKCGKL--VEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQ 466

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
              KPD +TFV +L+ CSHAGLV++GR  F+LM   YG  P A+HY+C+ D+L RAGQ+ 
Sbjct: 467 EEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLD 526

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA   +  MP  + D  V GALLGACR+HG+V M     + L EL P + G YVL +N++
Sbjct: 527 EAFEFIQSMPI-KPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMY 585

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKD----------------------HT 493
           A  G+WD    VR  + R+ ++K   +S +EVKG                        H 
Sbjct: 586 AKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHD 645

Query: 494 LLAPMREMGYV-----VLKEVD 510
           LLA M+  GYV     VL++V+
Sbjct: 646 LLAKMKSAGYVPDYSFVLQDVE 667



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 169/375 (45%), Gaps = 28/375 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+ A  +++  Y++ GRV EA +VFDE+ E +V +W +++SG  +  +  +   L  RM 
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRM- 159

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV 175
             +   V+   V L              S   MC  L   A+  +   Y V+   + ++ 
Sbjct: 160 --VGEGVAGDAVTLS-------------SVLPMCVVLGDRALALVMHVYAVKHGLSGELF 204

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA+I  Y   G + +A  +F  M  R++ TWN++I    + G   AA++L + M +S 
Sbjct: 205 VCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESG 264

Query: 236 FMPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+  T  S+ ++   C   L     H    R G++    +            +     
Sbjct: 265 VCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDM----YAKMSK 320

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLS 351
           +++A+  F+ L  +DVVSW  +I  Y  +G   +  R++  M    G KP + TFV VL 
Sbjct: 321 IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLP 380

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             S+ G +++G +  + +S   G        +CL D+  + G++ EAM +   MP   R 
Sbjct: 381 AYSYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP--RRS 437

Query: 412 HVVLGALLGACRLHG 426
                A++    +HG
Sbjct: 438 TGPWNAIIAGLGVHG 452


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 260/512 (50%), Gaps = 50/512 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RN 57
           F   G+++EA   F++M +    P+ V+  S++    R   L +   +   + ++    +
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               +A++  Y K G + +AR VF+ I + NV +W ++I+ Y +  + D     F  + L
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL-L 500

Query: 118 K--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           K  +K   S  T +L    +     LE+  W            + + R  F      D+ 
Sbjct: 501 KEGIKPDSSTFTSILNVCKSP--DALELGKWVQ----------SLIIRAGF----ESDLH 544

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA+++ +V+ G++  A  LFN MP+R++ +WN +I  + ++G    A     +M +S 
Sbjct: 545 IRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604

Query: 236 FMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFW 285
             P++ T T +L +C   E + E    HAL      + +        S+  KC       
Sbjct: 605 VKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCG------ 658

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                  ++ A L F  L  K+V SWT+MI  Y+ HG G +   LF +M + G KPD IT
Sbjct: 659 ------SIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           FVG LS C+HAGL+++G   F  M + +  +PR EHY C+ D+  RAG + EA+  ++KM
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKM 771

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
              + D  + GALLGAC++H DV +A+ + ++ +EL P+  G YV+ +N++AA G W E 
Sbjct: 772 QV-KPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEV 830

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            ++RK M +R V K    S IEV G+ H   +
Sbjct: 831 TKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCS 862



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 200/437 (45%), Gaps = 37/437 (8%)

Query: 9   KVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAES 62
           + +EA +L ++M Q    PD  +   M+       ++ K   LF  +  +    ++   +
Sbjct: 185 RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGT 244

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LK 120
           A+I+ ++K G VD+A KVF+ +   ++ +WTS+I+G  + RQ  +   LF  M  +    
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           + V++ +++  C H   + + + +       GL+                  +I    A+
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD-----------------TEIYVGTAL 347

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           ++ Y   G+M  A E+FNL+  RNV +W AMI  +A++G    A    N M +S   PN 
Sbjct: 348 LSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNR 407

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  SIL +C     + +    H   I+ G+  +  +       Y     G  +D   AR
Sbjct: 408 VTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYA--KCGSLMD---AR 462

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FER+  ++VV+W AMI AY  H         F  +LK G KPD  TF  +L+ C    
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPD 522

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            +E G+   +L+ RA GF+      + L  +    G +  AM + + MP  ERD V    
Sbjct: 523 ALELGKWVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP--ERDLVSWNT 579

Query: 418 LLGACRLHGDVRMA-DY 433
           ++     HG+ + A DY
Sbjct: 580 IIAGFVQHGENQFAFDY 596



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 199/426 (46%), Gaps = 35/426 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G V +A K+F+ + + D ++  SMIT   R+    +A  LF+ M E   Q + VA  +++
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLL 313

Query: 66  DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                   +++ ++V   + E      +Y  T+L+S Y K   +++   +F+   +K +N
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNL--VKGRN 371

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL----------AREYFVQMPN 171
           VVSWT ++ G A +G + +  +     + +G+E N +T +          A +   Q+ +
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431

Query: 172 KDIVAW--------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + I A          A+++ Y   G++  A  +F  + ++NV  WNAMI  Y ++     
Sbjct: 432 RIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTC 280
           A+     + +    P+ +T TSIL  C   + +       +L IR GFE +  +      
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVS 551

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            +V  + G   D+ SA   F  +  +D+VSW  +I  +  HG     F  F  M +SG K
Sbjct: 552 MFV--NCG---DLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVK 606

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD+ITF G+L+ C+    + +GR+   L++ A          + L  +  + G + +A  
Sbjct: 607 PDQITFTGLLNACASPEALTEGRRLHALITEA-ALDCDVVVGTGLISMYTKCGSIDDAHL 665

Query: 401 VVSKMP 406
           V   +P
Sbjct: 666 VFHNLP 671



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 173/434 (39%), Gaps = 116/434 (26%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY----SWTSLISGYFKARQVDEGRRL 111
           +N    +A ++   KAG++ EA  V   +   ++     +++SL+    K + + +G R+
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
                    N + ++ +           + ++  W  + +   +   T  A++ F +MP+
Sbjct: 127 --------HNHIKFSKI-----------QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPD 167

Query: 172 KDIVAWNAMITAYV-----------------------------------DAGNMAQASEL 196
           KD+ +WN ++  YV                                   DA N+ +  EL
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGEL 227

Query: 197 FNL-----------------------------------MPQRNVWTWNAMIDRYARNGPE 221
           F+L                                   +P+R++ TW +MI   AR+   
Sbjct: 228 FSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQF 287

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQET------ 272
             A  L  +M +    P++    S+L +C   E + +    HA    +G + E       
Sbjct: 288 KQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTAL 347

Query: 273 -SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            S+  KC              +  A   F  ++ ++VVSWTAMI  ++ HG   + F  F
Sbjct: 348 LSMYTKCG------------SMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFF 395

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M++SG +P+ +TF+ +L  CS    +++GR+  + + +A G+       + L  +  +
Sbjct: 396 NKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKA-GYITDDRVRTALLSMYAK 454

Query: 392 AGQVKEAMRVVSKM 405
            G + +A  V  ++
Sbjct: 455 CGSLMDARNVFERI 468



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 128/288 (44%), Gaps = 33/288 (11%)

Query: 159 TKLAREYFVQMPNKDIV-----AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
            + +R++ V    + ++      +    T++  + +  Q +E  ++   +N    NA ++
Sbjct: 21  VRFSRQFIVSFSPRLVILEEFDTFRLYTTSFSGSYSKGQGNEFVDI---KNTQRANAFLN 77

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-----EGMLENMLAHALAIRLG- 267
           R ++ G    AM +L  +       +  T +S+L  C      G  E +  H    ++  
Sbjct: 78  RLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQP 137

Query: 268 ----FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
               +    S+  KC             + NSA+  F+ +  KDV SW  ++  Y  H  
Sbjct: 138 DIFMWNMLISMYAKCG------------NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             + FRL  +M++ G KPD+ TFV +L+ C+ A  V+KG + F+L+  A G+       +
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA-GWDTDLFVGT 244

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            L ++  + G V +A++V + +P   RD +   +++     H   + A
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLP--RRDLITWTSMITGLARHRQFKQA 290


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 238/467 (50%), Gaps = 47/467 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++ID Y +   V+ A+K+FDE+   +  SW  +ISGY + R+ ++    F  M  +   
Sbjct: 282 NSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNE 341

Query: 122 VVSWTTVVLGCAHNGLIAKLEV-----------ISWTTMCTGLERNAMTK-----LAREY 165
                TVV   +    +  LE+           + +TT       +   K     +AR  
Sbjct: 342 KPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNI 401

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F +M  K+++ W +MI+ Y++ G++ +A +LF+  P R+V  W AMI+ Y +      A+
Sbjct: 402 FDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAV 461

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC------------EGML-ENMLAHALAIRLGFEQET 272
            L   M   R  P++ T  ++LT C             G L EN +   + +     +  
Sbjct: 462 ALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMY 521

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S   KC C            V+ +   F  LE KD  SWT++I   + +G   +  RLF+
Sbjct: 522 S---KCGC------------VDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFS 566

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M + G KPD+ITF+GVLS CSH GLVE+GR+ FN M + +  +P+ EHY C+ D+L RA
Sbjct: 567 EMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRA 626

Query: 393 GQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           G + EA  ++ ++P    + VV   GALL ACR+H +V M + + ++L  ++   S  + 
Sbjct: 627 GLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHT 686

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L AN++A+   W++  +VR+KM E  VKK+   S IEV G  H  L 
Sbjct: 687 LLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLV 733



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 59/303 (19%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------SQRNIVA--- 60
           V+ A KLFDEM+  D VS   MI+ ++R      A   FR M +       +  +V+   
Sbjct: 294 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 353

Query: 61  ----------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                       ++A++D Y K G ++ AR +FDE+   NV  W
Sbjct: 354 ACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICW 413

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH----NGLIA--------- 139
           TS+ISGY     + E R LFD+ P  +++VV WT ++ G       +  +A         
Sbjct: 414 TSMISGYINCGDLREARDLFDKSP--VRDVVLWTAMINGYVQFHHFDDAVALFREMQIQR 471

Query: 140 ----KLEVISWTTMCTGLERNAMTKLAREYFVQ-MPNKDIVAWNAMITAYVDAGNMAQAS 194
               K  V++  T C  L      K    Y  +     D+V   A+I  Y   G + ++ 
Sbjct: 472 VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSL 531

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--G 252
           E+F  +  ++  +W ++I   A NG    A++L + M +    P++ T   +L++C   G
Sbjct: 532 EIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGG 591

Query: 253 MLE 255
           ++E
Sbjct: 592 LVE 594



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 68/358 (18%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           +FR   E  R+ + +          G +  A K+F+ + + +++ +  ++  Y K   + 
Sbjct: 166 IFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILR 225

Query: 107 EGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           +   LF ++            P  LK +     V  G    G I K          TG++
Sbjct: 226 KVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVK----------TGMD 275

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                             D   +N++I  Y +  N+  A +LF+ M  R+  +WN MI  
Sbjct: 276 L-----------------DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318

Query: 215 YAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM----LENMLAHALAIRLGFE 269
           Y R    E A      +  +    P+E T  S L++C  +    L + + + +   LGF 
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 378

Query: 270 QET-----SLTYKCTCHYV---FWD---------WGFQL-------DVNSARLAFERLEA 305
                    +  KC C  +    +D         W   +       D+  AR  F++   
Sbjct: 379 TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPV 438

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
           +DVV WTAMI  Y    H      LF  M     KPD+ T V +L+ C+  G +E+G+
Sbjct: 439 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGK 496



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           GN+  A ++FN +   +++ +N M+  YA+ G     + L   + +    P+  T   +L
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAK 306
            +  G L + +     +R GF  +T +      +    D  ++L +V +A+  F+ +  +
Sbjct: 251 KAI-GCLRD-VRQGEKVR-GFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTR 307

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKT 365
           D VSW  MI  Y            F  M + G  KPDE T V  LS C+    +E G + 
Sbjct: 308 DSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 367

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            N + +  GF  R ++   L D+  + G +  A  +  +M
Sbjct: 368 HNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 405



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 27/246 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  +FDEMS  + +   SMI+ ++   DL +A  LF   P   R++V  +AMI+G
Sbjct: 393 GCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSP--VRDVVLWTAMING 450

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRL---FDRMPLKLK 120
           YV+    D+A  +F E+    V    ++  +L++G  +   +++G+ +    D   + + 
Sbjct: 451 YVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMD 510

Query: 121 NVVSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQM-- 169
            VV    + +    GC    L     +   +  SWT++  GL  N  T  A   F +M  
Sbjct: 511 VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMER 570

Query: 170 --PNKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEG 222
                D + +  +++A    G + +    FN M      +  V  +  +ID   R G   
Sbjct: 571 VGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLD 630

Query: 223 AAMKLL 228
            A +L+
Sbjct: 631 EAEELI 636


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 238/482 (49%), Gaps = 51/482 (10%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           +I   ++   +  A K+FD I +  V+ +  LI  Y       +   L+ +M L+    N
Sbjct: 22  LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPN 81

Query: 122 VVSWTTVVLGCA-----------HNGLIAK---LEVISWTTMCTGLERNAMTKLAREYFV 167
             S+T +   CA           H   +      +V + T +     +  +  LAR+ F 
Sbjct: 82  EHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFD 141

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +M  +D+  WN+MI  Y   G++  A ELF LMP RNV +W AMI  YA+NG    A+ +
Sbjct: 142 EMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSM 201

Query: 228 LNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK--------- 277
             +M +   M PNE T  S+L +C     N+ A  +  R+      +  +K         
Sbjct: 202 FLMMEEETEMRPNEVTLASVLPACA----NLGALEVGERIEVYARGNGYFKNLYVSNALL 257

Query: 278 ---CTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFAR 333
                C  +   WG           FE ++ + ++ SW +MI+  + HG   +   LF +
Sbjct: 258 EMYARCGRIDKAWG----------VFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYK 307

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML+ G  PD++TFVGVL  C+H G+V +G+  F  M R +   P+ EHY C+ D+L RAG
Sbjct: 308 MLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAG 367

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           +++EA  ++ +M P E D VV G LLGAC  HG V +A+     L EL+PS+ G YV+ +
Sbjct: 368 ELREAHDLILRM-PMEPDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILS 426

Query: 454 NVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMREMG-----YVVLK 507
           N++A  G WD  A++RK M+  ++ K A +S IE  G  H  +   R        Y +L 
Sbjct: 427 NIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRSHSRSDEIYALLD 486

Query: 508 EV 509
           EV
Sbjct: 487 EV 488



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 36/294 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A +A++D Y K G +  ARK FDE+   +V +W S+I+GY +   ++    LF  MP
Sbjct: 116 DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMP 175

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAK------------------LEVISWTTMCTGL----- 153
              +NV SWT ++ G A NG  AK                  + + S    C  L     
Sbjct: 176 --ARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEV 233

Query: 154 -ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAM 211
            ER  +      YF     K++   NA++  Y   G + +A  +F  +  +RN+ +WN+M
Sbjct: 234 GERIEVYARGNGYF-----KNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSM 288

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271
           I   A +G    A++L   M +    P++ T   +L +C      M+          E++
Sbjct: 289 IMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTH--GGMVVEGQHFFESMERD 346

Query: 272 TSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGH 323
            S+  K   +    D  G   ++  A     R+  + D V W  ++ A S HGH
Sbjct: 347 FSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGH 400


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/502 (31%), Positives = 247/502 (49%), Gaps = 54/502 (10%)

Query: 15  KLFDEMSQPDPVSCASMITVF--------LRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            L   +S P P    S   VF        L+      A  L R +   Q   +  S M+ 
Sbjct: 57  NLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGL---QPTALVGSKMVA 113

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            Y  +G +D +  VF+ I +            YF               P  LK+ V   
Sbjct: 114 FYASSGDIDSSVSVFNGIGD------------YFT-------------FPFVLKSSVELL 148

Query: 127 TVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           +V +G   +GLI ++    ++   T++     +      A + F  M  +D+ +WNA++ 
Sbjct: 149 SVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLA 208

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ--SRFMPNE 240
            Y  +G +  A  +F  MP RN+ +W  MI  Y+++G    A+ L + M +  S   PN 
Sbjct: 209 GYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNW 268

Query: 241 TTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  S+L +C  +  LE     H LA R+G     S+    T  Y     G  +D   AR
Sbjct: 269 VTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA--KCGSLVD---AR 323

Query: 298 LAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
             F++L    K++++W  MI AY+++GHG Q    F  M+++G +PD+ITF G+LS CSH
Sbjct: 324 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           +GLV+ G K FN MS  Y   PR EHY+C+AD+L RAG++ EA ++V +M P      + 
Sbjct: 384 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEM-PMPAGPSIW 442

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           G+LL ACR H ++ MA+    +L  L+P ++G YVL +N++A  G W E  ++R  ++ +
Sbjct: 443 GSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQ 502

Query: 476 -VKKVASFSQIEVKGKDHTLLA 496
             KK    S IE+ GK H  L 
Sbjct: 503 GTKKSPGCSWIEINGKAHMFLG 524



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 41/244 (16%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++ +A K+FD M+  D  S  +++  + ++  +  A A+F  MP   RNIV+ + 
Sbjct: 179 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMP--WRNIVSWTT 236

Query: 64  MIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQ---VDEGRRLFDRMPL 117
           MI GY ++G   +A  +FDE+ +   G   +W +++S      Q   ++ GR++ +    
Sbjct: 237 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE---- 292

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEV-ISWTTM---CTGL--ERNAMTKLAREYFVQMPN 171
                       L C   GL +   V I+ T M   C  L   RN   KL R        
Sbjct: 293 ------------LAC-RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRN------E 333

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW----TWNAMIDRYARNGPEGAAMKL 227
           K+++AWN MITAY   G+  QA   F  M Q  +     T+  ++   + +G     +K 
Sbjct: 334 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 393

Query: 228 LNLM 231
            N M
Sbjct: 394 FNHM 397



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEALFR-----A 50
           S +  +G  ++A  LFDEM +      P+ V+  S++    +   L +   +        
Sbjct: 239 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 298

Query: 51  MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYFKARQVDEG 108
           +  +   ++A +AM   Y K G + +AR  FD++   E N+ +W ++I+ Y       + 
Sbjct: 299 LNSNASVLIALTAM---YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQA 355

Query: 109 RRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
              F  M       + +++T ++ GC+H+GL+
Sbjct: 356 VSTFREMIQAGIQPDDITFTGLLSGCSHSGLV 387


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 241/476 (50%), Gaps = 47/476 (9%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++ ++ +   L  A  LF  MP  ++NI++ + +I+GY ++G    ARK+FDE+ E NV 
Sbjct: 93  LLNLYSKCGQLDTAITLFGVMP--RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVA 150

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH-NGLIAKLEVISWT 147
           +W ++++G  +    +EG  LF RM     L +  +  +V+ GCA    L+A  +V  + 
Sbjct: 151 TWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYV 210

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
             C G E N                 +V  +++   Y+  G++ +   L   MP +NV  
Sbjct: 211 RKC-GFEFN-----------------LVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVA 252

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           WN +I   A+NG     +   N+M  + F P++ T  S+++SC  +    +    HA  I
Sbjct: 253 WNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVI 312

Query: 265 RLG-------FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           + G            S+  +C C        + L V      F   E  DVV W++MI A
Sbjct: 313 KAGASLIVSVISSLISMYSRCGC------LEYSLKV------FLECENGDVVCWSSMIAA 360

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y  HG G +   LF +M +   + +++TF+ +L  CSH GL EKG K F+LM   YG KP
Sbjct: 361 YGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKP 420

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
           R EHY+C+ D+L R G V+EA  ++  MP  + D +    LL AC++H    MA  I E 
Sbjct: 421 RLEHYTCMVDLLGRYGSVEEAEALIRSMPV-KADVITWKTLLSACKIHKKTEMARRISEE 479

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +  L P     YVL +N+HA+   WD+ + VRK M +R++KK    S +EVK + H
Sbjct: 480 VFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIH 535



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 121/300 (40%), Gaps = 61/300 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A  LF  M + + +SC  +I  + R+ D   A  +F  MPE  RN+   +AM+ G
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPE--RNVATWNAMVAG 158

Query: 68  YVK----------AGRVDEARKVFDEI-----------------------------YEGN 88
            ++            R++E   + DE                              +E N
Sbjct: 159 LIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFN 218

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA--------- 139
           +   +SL   Y K   + EG RL   MP   +NVV+W T++ G A NG            
Sbjct: 219 LVVVSSLAHMYMKCGSLGEGERLIRAMP--SQNVVAWNTLIAGRAQNGYPEEVLDQYNMM 276

Query: 140 --------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITAYVDAGNM 190
                   K+  +S  + C+ L      +      ++     IV+  +++I+ Y   G +
Sbjct: 277 KMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCL 336

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             + ++F      +V  W++MI  Y  +G    A+ L N M Q +   N+ T  S+L +C
Sbjct: 337 EYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYAC 396


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 162/522 (31%), Positives = 249/522 (47%), Gaps = 61/522 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G + +A K+FD     D VS  +++  +++  D+ +A  +F  MPE  R   A 
Sbjct: 146 SMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPE--RGAAAV 203

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----P 116
           S+M+  + + G VDEARKVFD +   +V++WT++IS + +  +  E   LF  M     P
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----------RNAMTKL---- 161
           +    +V    VV  CA      +LEV     MC GL            +NA+  +    
Sbjct: 264 VDEAVMV---CVVAACA------RLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314

Query: 162 -----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
                AR  F      D  +WN+MI  Y+  G++  A ELF +MP ++  +W  MI    
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---------EGMLENMLAHALAIRLG 267
           +N     A+ + N M      P+E T  S++++C         + M E +  H   I + 
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVI 434

Query: 268 FEQETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
                   Y KC C            + SA   F+ +E +    W A+I+  + +G   +
Sbjct: 435 LGTSLIDMYMKCGC------------LESALEVFDTMEERGTPCWNAVIVGLAMNGLVMK 482

Query: 327 VFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
              +F+ M  S T  P+EITF GVLS C HAGLVE+G+  F LM   Y   P   HY C+
Sbjct: 483 SLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCM 542

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG VKEA  ++  M P   D    GALLG+C  HGD  + + +G +L+ L P  
Sbjct: 543 VDLLGRAGYVKEAENLIESM-PMSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHH 601

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
            G + + +N++A+ G W     +R  M++  V K+   S +E
Sbjct: 602 DGFHTMLSNIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 158/581 (27%), Positives = 271/581 (46%), Gaps = 102/581 (17%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------------------- 51
           +AT + D + +P+  S +++I  F + H    A + F  M                    
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 52  ------PESQRNIVA-----------ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                 P  Q + +A           +S+++  Y+K  ++ +A +VFD ++E +V SW++
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSA 185

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           L++ Y +   VDE +RLF  M       N++SW  ++ G  H+GL ++  ++       G
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 153 LERNAMTKLA-------------------------------------------------R 163
            E +  T  +                                                  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNG 219
           + F QM + D+ + NA I      G +  +  LF  +  +    NV +W +MI   ++NG
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTY 276
            +  A++L   M  +   PN  T   +L +C     ++    AH  ++R G   +  +  
Sbjct: 366 RDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGS 425

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y          + ++R+ F+ +  K++V W A+I  Y+ HG   +   +F  M +
Sbjct: 426 ALIDMYAKCG-----RIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           SG KPD I+F  VLS CS +GL E+G   FN MS  YG + R EHY+C+  +L RAG+++
Sbjct: 481 SGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLE 540

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           +A  ++ +MP +  D  V GALL +CR+H +V + +   E+L EL+PS+ G Y+L +N++
Sbjct: 541 QAYAMIRRMPVNP-DACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIY 599

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           A++G W+E  +VR  M+ + ++K    S IEVK K H LLA
Sbjct: 600 ASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLA 640



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 109/221 (49%), Gaps = 12/221 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y +    A A+ + +L+P+ NV++++ +I  +++      A+   + M     MP+
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
                S + +C G+     A   H +A   GF+ ++ +       Y+  +      +  A
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN-----QIRDA 168

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F+R+   DVVSW+A++ AY+  G   +  RLF+ M  SG +P+ I++ G+++  +H+
Sbjct: 169 HRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHS 228

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           GL  +    F L     GF+P     + ++ +L   G +++
Sbjct: 229 GLYSEAVLMF-LDMHLRGFEPDG---TTISSVLPAVGDLED 265



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 67/292 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G      E +++FD+M   D  SC + I    RN  +  +  LFR + +   + N+V+ 
Sbjct: 295 YGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSW 354

Query: 62  SAMIDGYVKAGRVDEARKVFDEI------------------------------------- 84
           ++MI    + GR  EA ++F E+                                     
Sbjct: 355 TSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLR 414

Query: 85  --YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI---- 138
                +VY  ++LI  Y K  ++   R  FD +P   KN+V W  V+ G A +G      
Sbjct: 415 RGISTDVYVGSALIDMYAKCGRIQASRICFDGIP--TKNLVCWNAVIAGYAMHGKAKEAM 472

Query: 139 ----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITA 183
                      K ++IS+T + +   ++ +T+    YF  M +K      +  +  M+T 
Sbjct: 473 EIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTL 532

Query: 184 YVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARNGPEG--AAMKLLNL 230
              AG + QA  +   MP   +   W A++   R   N   G  AA KL  L
Sbjct: 533 LSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFEL 584



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 8/173 (4%)

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
           AHA  ++ G   +T L  K   HY        +    A L  + +   +V S++ +I A+
Sbjct: 35  AHAHILKTGLFNDTHLATKLLSHY-----ANNMCFADATLVLDLVPEPNVFSFSTLIYAF 89

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           S           F++ML  G  PD       +  C+    ++  R+   + S + GF   
Sbjct: 90  SKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS-GFDSD 148

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           +   S L  +  +  Q+++A RV  +M   E D V   AL+ A    G V  A
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRM--FEPDVVSWSALVAAYARQGCVDEA 199


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 233/448 (52%), Gaps = 29/448 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             ++  +++++  YVK    D+A KVFD+I + NV SWT++I+GY  +    E    F +
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 115 M-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +  + LK +  S   V+  CA  G     E I      +G+ RN                
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA------------ 253

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                 +++  YV  GN+ +A+ +F+ MP++++ +W+ MI  YA NG    A+ L   M 
Sbjct: 254 -----TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 233 QSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                P+  T   +L++C   G L+  + A +L  R  F     L       Y       
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG--- 365

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  A   F  ++ KD V W AM++  S +GH   VF LF+ + K G +PDE TF+G+
Sbjct: 366 --SVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGL 423

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+H G V +GR+ FN M R +   P  EHY C+ D+L RAG + EA ++++ M P +
Sbjct: 424 LCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM-PMK 482

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + VV GALLG C+LH D  +A+ + ++LIEL+P +SG YV  +N+++    W+E  ++R
Sbjct: 483 PNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIR 542

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             M E++++K+ + S IE+ G  H  L 
Sbjct: 543 STMKEQQIQKIRACSWIEIDGIVHEFLV 570



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D    N ++   +D G+   +  +F+ + + N++ WN MI           A+ L   
Sbjct: 45  DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGS 104

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M    F+PN  T   +L +C   L+  L    H+L ++ G++ +  +       YV  D 
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCD- 163

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               + + A   F+ +  K+VVSWTA+I  Y + GH  +    F ++L+ G KPD  + V
Sbjct: 164 ----NFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLV 219

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL+ C+  G    G      +S + G        + L D+  + G ++ A  + S MP 
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMP- 277

Query: 408 HERDHVVLGALLGACRLHG 426
            E+D V    ++     +G
Sbjct: 278 -EKDIVSWSTMIQGYAFNG 295



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 25/252 (9%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVA 60
           +G  +EA   F ++ +    PD  S   ++    R  D    E + R + +S   RN+  
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFV 252

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
            ++++D YVK G ++ A  +F  + E ++ SW+++I GY       +   LF +M  + L
Sbjct: 253 ATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENL 312

Query: 120 K-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           K +  +   V+  CA    +  L++  W          A + + R  F+  P    V   
Sbjct: 313 KPDCYTMVGVLSACA---TLGALDLGIW----------ASSLMDRNEFLSNP----VLGT 355

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++ QA E+F  M +++   WNAM+   + NG   A   L +L+ +    P
Sbjct: 356 ALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRP 415

Query: 239 NETTCTSILTSC 250
           +E T   +L  C
Sbjct: 416 DENTFIGLLCGC 427


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 233/448 (52%), Gaps = 29/448 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             ++  +++++  YVK    D+A KVFD+I + NV SWT++I+GY  +    E    F +
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 115 M-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +  + LK +  S   V+  CA  G     E I      +G+ RN                
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVA------------ 253

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                 +++  YV  GN+ +A+ +F+ MP++++ +W+ MI  YA NG    A+ L   M 
Sbjct: 254 -----TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 233 QSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                P+  T   +L++C   G L+  + A +L  R  F     L       Y       
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG--- 365

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  A   F  ++ KD V W AM++  S +GH   VF LF+ + K G +PDE TF+G+
Sbjct: 366 --SVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGL 423

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+H G V +GR+ FN M R +   P  EHY C+ D+L RAG + EA ++++ M P +
Sbjct: 424 LCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM-PMK 482

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + VV GALLG C+LH D  +A+ + ++LIEL+P +SG YV  +N+++    W+E  ++R
Sbjct: 483 PNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIR 542

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             M E++++K+ + S IE+ G  H  L 
Sbjct: 543 STMKEQQIQKIRACSWIEIDGIVHEFLV 570



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D    N ++   +D G+   +  +F+ + + N++ WN MI           A+ L   
Sbjct: 45  DQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGS 104

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M    F+PN  T   +L +C   L+  L    H+L ++ G++ +  +       YV  D 
Sbjct: 105 MRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCD- 163

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               + + A   F+ +  K+VVSWTA+I  Y + GH  +    F ++L+ G KPD  + V
Sbjct: 164 ----NFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLV 219

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL+ C+  G    G      +S + G        + L D+  + G ++ A  + S MP 
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMP- 277

Query: 408 HERDHVVLGALLGACRLHG 426
            E+D V    ++     +G
Sbjct: 278 -EKDIVSWSTMIQGYAFNG 295



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 25/252 (9%)

Query: 7   TGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVA 60
           +G  +EA   F ++ +    PD  S   ++    R  D    E + R + +S   RN+  
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFV 252

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
            ++++D YVK G ++ A  +F  + E ++ SW+++I GY       +   LF +M  + L
Sbjct: 253 ATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENL 312

Query: 120 K-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           K +  +   V+  CA    +  L++  W          A + + R  F+  P    V   
Sbjct: 313 KPDCYTMVGVLSACA---TLGALDLGIW----------ASSLMDRNEFLSNP----VLGT 355

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++ QA E+F  M +++   WNAM+   + NG   A   L +L+ +    P
Sbjct: 356 ALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRP 415

Query: 239 NETTCTSILTSC 250
           +E T   +L  C
Sbjct: 416 DENTFIGLLCGC 427


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 162/526 (30%), Positives = 269/526 (51%), Gaps = 50/526 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A ++FD+M + D V+  SMI+ F  +      + + R + + Q ++   S+ I G
Sbjct: 168 GCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEG--SYDEVARLLVQMQNDVSPNSSTIVG 225

Query: 68  YVKAGRVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            + A     + +   EI        + G+V   T ++  Y K + +D  RR+FD M + +
Sbjct: 226 VLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGI-V 284

Query: 120 KNVVSWTTVV--------------LGCAHNGLIAKLEVISWTTMCTGLERNA-MTKLA-- 162
           KN V+W+ +V              L C    L   + V+S  T+ T +   A +T L+  
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344

Query: 163 --------REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                   +  FV     D++  N +++ Y   G +  A   FN M  R+  ++ A+I  
Sbjct: 345 TCLHCYAIKSGFVL----DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQE 271
           Y +NG     +++   M  S   P + T  S+L +C    G+     +H  AI  GF  +
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTAD 460

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
           T +     C+ +   +     +++AR  F+R+  + +VSW  MI+AY  HG G +   LF
Sbjct: 461 TMI-----CNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLF 515

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
             M   G KPD++TF+ ++S CSH+GLV +G+  FN M++ +G  PR EHY+C+ D+L R
Sbjct: 516 DNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSR 575

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG  KE    + KMP  E D  V GALL ACR++ +V + + + +++ +L P S+G +VL
Sbjct: 576 AGLFKEVHSFIEKMPL-EPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVL 634

Query: 452 SANVHAARGEWDEFAQVR-KKMERRVKKVASFSQIEVKGKDHTLLA 496
            +N+++A G WD+ AQVR  + E+  +K    S IE+ G  HT L 
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLG 680



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 9/272 (3%)

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR--NVWTWNA 210
           + ++ +  L R +   + N D V +  ++  Y+    +  A  +F+ MP R  NV  WN 
Sbjct: 31  IHQHLLKCLHRTHETNLTNFD-VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNL 89

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270
           +I  YA NGP   A+ L   M      PN  T   +L +C  + E      +   +   +
Sbjct: 90  LIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLR 149

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH-GHGFQVFR 329
             S  Y  T    F+     LD   A+  F+++  +DVV+W +MI  +S H G   +V R
Sbjct: 150 LESNVYVSTALVDFYAKCGCLD--DAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVAR 207

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           L  +M ++   P+  T VGVL   +    +  G++      R  GF       + + D+ 
Sbjct: 208 LLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR-GFVGDVVVGTGILDVY 265

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            +   +  A R+   M    ++ V   A++GA
Sbjct: 266 GKCQCIDYARRIFDMMGI-VKNEVTWSAMVGA 296



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 160/406 (39%), Gaps = 58/406 (14%)

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           +  L+  Y    ++   R +FD+MP + KNVV W  ++   A NG   +   + +  +  
Sbjct: 54  FEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGY 113

Query: 152 GLERNAMT--------------KLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQA 193
           G+  N  T                 RE    +       ++    A++  Y   G +  A
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS---C 250
            E+F+ M +R+V  WN+MI  ++ +      +  L +  Q+   PN +T   +L +    
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 251 EGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
             +      H   +R GF  +         +  KC C            ++ AR  F+ +
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQC------------IDYARRIFDMM 281

Query: 304 E-AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-----TFVGVLSDCSHAG 357
              K+ V+W+AM+ AY       +   LF ++L    K D I     T   V+  C++  
Sbjct: 282 GIVKNEVTWSAMVGAYVVCDFMREALELFCQLLM--LKDDVIVLSAVTLATVIRVCANLT 339

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            +  G    +  +   GF       + L  +  + G +  AMR  ++M    RD V   A
Sbjct: 340 DLSTG-TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDL--RDAVSFTA 396

Query: 418 LLGACRLHGD----VRMADYIGERLIELQPSSSG-AYVLSANVHAA 458
           ++     +G+    +RM  ++  +L  + P  +  A VL A  H A
Sbjct: 397 IISGYVQNGNSEEGLRM--FLEMQLSGINPEKATLASVLPACAHLA 440


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 207/384 (53%), Gaps = 29/384 (7%)

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V  WT +  G         A++ F  MP K +V+  AM+T Y   G +  A  LF+ M +
Sbjct: 93  VFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEE 152

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLA 259
           R+   WN MID Y +NG    A+ L   M +++  PNE T  S+L++C   G LE+    
Sbjct: 153 RDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWV 212

Query: 260 HAL----AIRLGFEQETSLT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           H+      I+      T+L     KC              +  ARL F++++ KDVV+W 
Sbjct: 213 HSYIENNGIQFNVHVGTALVDMYSKCG------------SLEDARLVFDKIDDKDVVAWN 260

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           +MI+ Y+ HG   +  +LF  M + G  P  ITF+G+LS C H+G V +G   FN M   
Sbjct: 261 SMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDE 320

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           YG +P+ EHY C+ ++L RAG V++A  +V  M   E D V+ G LLGACRLHG + + +
Sbjct: 321 YGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI-EPDPVLWGTLLGACRLHGKIALGE 379

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKD 491
            I E L++   ++SG Y+L +N++AA G WD  A++R  M +  VKK    S IEV  K 
Sbjct: 380 KIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 439

Query: 492 HTLLA-----PMREMGYVVLKEVD 510
           H  LA     P R+  Y++L+E++
Sbjct: 440 HEFLAGGLNHPKRKEIYMMLEEIN 463



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 23/250 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G++  +  LF     P      ++I       D+  A+ LF  MPE  +++V+ +A
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPE--KSLVSLTA 129

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--- 120
           M+  Y K G +D AR +FD + E +   W  +I GY +    +E   LF RM LK K   
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKP 188

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V+  +V+  C   G +  LE   W    + +E N +     ++ V +         A+
Sbjct: 189 NEVTVLSVLSAC---GQLGALESGRWVH--SYIENNGI-----QFNVHVG-------TAL 231

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G++  A  +F+ +  ++V  WN+MI  YA +G    A++L   M +    P  
Sbjct: 232 VDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 291

Query: 241 TTCTSILTSC 250
            T   IL++C
Sbjct: 292 ITFIGILSAC 301



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 60/242 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G++  A  LFD M + D V    MI  + +N    +A  LFR M ++             
Sbjct: 138 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 197

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q N+   +A++D Y K G +++AR VFD+I + +V 
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257

Query: 91  SWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +W S+I GY       E  +LF    RM L   N +++  ++  C H+G + +     W 
Sbjct: 258 AWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN-ITFIGILSACGHSGWVTE----GW- 311

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL---FNLMPQRN 204
                   +   K+  EY ++     I  +  M+     AG++ QA EL    N+ P   
Sbjct: 312 --------DIFNKMKDEYGIE---PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 360

Query: 205 VW 206
           +W
Sbjct: 361 LW 362


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 168/538 (31%), Positives = 269/538 (50%), Gaps = 49/538 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQR--NIV 59
           G +++A  +FD+M   D V+  SMI  ++RN    +   +F  M      P      +++
Sbjct: 243 GMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVI 302

Query: 60  AESAMID--GYVKAGRVDEARKVF--DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
              A +     VK  +    +  F  D+I        T+L+    K +++D+   LF  M
Sbjct: 303 KSCASLRELALVKLMQCKALKSGFTTDQIV------ITALMVALSKCKEMDDALSLFSLM 356

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK---LAREY--FVQMP 170
             + KNVVSWT ++ GC  NG   +   +       G++ N  T    L   Y  FV   
Sbjct: 357 E-EGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEM 415

Query: 171 NKDIVAWN---------AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           + +++  N         A++ AYV  GN   A ++F ++  +++  W+AM+  YA+ G  
Sbjct: 416 HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGET 475

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML----ENMLAHALAIRLGFEQETSLTYK 277
             A KL + + +    PNE T +S++ +C        +    HA AI++           
Sbjct: 476 EEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNAL----- 530

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C    +   +  + +++SA   F+R + +D+VSW +MI  YS HG   +   +F  M K 
Sbjct: 531 CVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKR 590

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
               D +TF+GV++ C+HAGLVEKG+K FN M   +   P  +HYSC+ D+  RAG +++
Sbjct: 591 NMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEK 650

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           AM ++++M P      V   LLGA R+H +V + +   E+LI LQP  S AYVL +N++A
Sbjct: 651 AMGIINEM-PFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYA 709

Query: 458 ARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           A G W E   VRK M+ R+VKK   +S IEVK K ++ LA     P+    Y  L E+
Sbjct: 710 AAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSEL 767



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 132/284 (46%), Gaps = 35/284 (12%)

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT- 151
           TSL+  Y K   V++GRR+FD M    +NVVSWT+++ G + NGL   +    W   C  
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEM--GERNVVSWTSLLAGYSWNGLYGYV----WELFCQM 185

Query: 152 ---GLERNAMT------KLAREYFVQMP------------NKDIVAWNAMITAYVDAGNM 190
              G+  N  T       L  E  V +              + I  +N++I+ Y   G +
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGML 245

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A ++F+ M  R+  TWN+MI  Y RNG +    ++ N M  +   P   T  S++ SC
Sbjct: 246 RDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC 305

Query: 251 EGMLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
             + E  L   +   A++ GF   T+     T   V      ++D ++  L     E K+
Sbjct: 306 ASLRELALVKLMQCKALKSGF---TTDQIVITALMVALSKCKEMD-DALSLFSLMEEGKN 361

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           VVSWTAMI     +G   Q   LF++M + G KP+  T+  +L+
Sbjct: 362 VVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y+   N+     +F+ M +RNV +W +++  Y+ NG  G   +L   M     +P
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 239 NETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           N  T ++++ +   EG++   +  HA+ ++ GFE+   +       Y     G   D   
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYS--RLGMLRD--- 247

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           AR  F+++E +D V+W +MI  Y  +G   +VF +F +M  +G KP  +TF  V+  C+
Sbjct: 248 ARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCA 306



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 11/218 (5%)

Query: 193 ASELFNLMPQR--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A  LF+ +P R   +   N ++  Y+R+     A+ L   +  S   P+E+T + +   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 251 EGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
            G L+  L    H   ++ G     S+       Y+  +     +VN  R  F+ +  ++
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTE-----NVNDGRRVFDEMGERN 158

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           VVSWT+++  YS +G    V+ LF +M   G  P+  T   V++   + G+V  G +   
Sbjct: 159 VVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHA 218

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           ++ + +GF+     ++ L  +  R G +++A  V  KM
Sbjct: 219 MVVK-HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKM 255



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 40/246 (16%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--- 56
           +  TG+ +EA KLF ++ +    P+  + +S+I          +    F A     R   
Sbjct: 469 YAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNN 528

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            +   SA++  Y K G +D A +VF    E ++ SW S+ISGY +  Q  +   +FD M 
Sbjct: 529 ALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQ 588

Query: 117 LKLKNV--VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            +  +V  V++  V+  C H GL+ K                      ++YF  M N   
Sbjct: 589 KRNMDVDAVTFIGVITACTHAGLVEK---------------------GQKYFNSMINDHH 627

Query: 175 VA-----WNAMITAYVDAGNMAQASELFNLM---PQRNVWTWNAMIDRYARNGPEG--AA 224
           +      ++ MI  Y  AG + +A  + N M   P   VW       R  RN   G  AA
Sbjct: 628 INPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAA 687

Query: 225 MKLLNL 230
            KL++L
Sbjct: 688 EKLISL 693


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 162/561 (28%), Positives = 253/561 (45%), Gaps = 80/561 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-------- 53
           G++  A +LFDEM   D V+  +M+  + +     +A  LF  M      P+        
Sbjct: 19  GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATL 78

Query: 54  -----------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q ++   +++ID Y K      AR+VF+E+   N  
Sbjct: 79  SACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEV 138

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA----------- 139
           SW SL+  Y  +   D  R +FD MP K++  ++W  ++ G    G +            
Sbjct: 139 SWCSLLFAYTSSGLFDVARVVFDGMPKKVE--IAWNIMISGYGQCGDVELCLGLFKKMRE 196

Query: 140 -KLEVISWT------TMCTGLERNAMTKLAREYFVQMPNKDI------------VAWNAM 180
             L+   WT       +C  L+  +   +   + ++    D+            V+WNAM
Sbjct: 197 DSLQPDQWTFSALVNALCE-LQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAM 255

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I A++  G+  +A  +F L P++NV +W +MI  YARNG    A+     M ++   P++
Sbjct: 256 IDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDD 315

Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  ++L +C  +       + H   I  GF     +       Y         D+  + 
Sbjct: 316 FTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCG-----DIQGSN 370

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
            AF+ +  KD+VSW AM+     HGH  Q   L+  M+ SG KPD++TF+G+L  CSH+G
Sbjct: 371 TAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSG 430

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG- 416
           L+EKG+  F  M   YG     EH  C+ D+L R G + +A  +V +     R    L  
Sbjct: 431 LIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPE 490

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           ALLGAC  H +VRM   +GE L   +P    +YVL +N++   G+W E   VRK M +  
Sbjct: 491 ALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHG 550

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           VKK+   S IEV+ K    +A
Sbjct: 551 VKKMPGCSWIEVRNKVTVFVA 571



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 180/416 (43%), Gaps = 40/416 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             ++   ++ I    K GR+  AR++FDE+   +  +W ++++ Y +     +   LF  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 115 MPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL------ 161
           M +     +  ++T  +  CA  G + +   I    + +G +      N++  +      
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLS 121

Query: 162 ---AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              AR  F +M   + V+W +++ AY  +G    A  +F+ MP++    WN MI  Y + 
Sbjct: 122 ATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQC 181

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLG-------F 268
           G     + L   M +    P++ T ++++ +   + E     + H   I+ G       F
Sbjct: 182 GDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVF 241

Query: 269 EQETSLTYKCTCHYVFWDWGFQL-----DVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           E    LT       V W+          D + A L F+    K+VVSWT+MI  Y+ +GH
Sbjct: 242 ESIGILT------QVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGH 295

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G Q    F +M+++  +PD+ TF  VL  CS    +  G+     +   YGF    +  +
Sbjct: 296 GEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIH-YGFHAYVDVGN 354

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
            L ++  + G ++ +     ++    +D V   A+L    +HG    A  + E ++
Sbjct: 355 GLVNMYAKCGDIQGSNTAFKEILG--KDLVSWNAMLFGLGMHGHATQALELYEEMV 408


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 246/479 (51%), Gaps = 54/479 (11%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S R+ V+ +A+I GYV  G +D+AR++FDEI   +V SW ++ISGY ++ + +E    F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 114 RMPLK--LKNVVSWTTVVLGCAH--NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            M     L N  +   V+  C H  +G + K  + SW     G   N          +Q+
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGKW-IGSWVRD-NGFGSN----------LQL 300

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            N       A+I  Y   G    A ELF+ + +++V +WN MI  Y+       A+ L  
Sbjct: 301 TN-------ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFE 353

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHA-LAIRLGFEQETSL-------TYKC 278
           +M +S   PN+ T   IL +C   G L+     HA +   L      SL         KC
Sbjct: 354 VMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKC 413

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            C            + +A   F  + ++++ SW AM+  ++ HGH  +   LF+ M+  G
Sbjct: 414 GC------------IEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKG 461

Query: 339 T-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             +PD+ITFVGVLS C+ AGLV+ G + F  M + YG  P+ +HY C+ D+L RA + +E
Sbjct: 462 LFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEE 521

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A  ++ K    E D  + G+LL AC+ HG V   +Y+ ERL +L+P ++GA+VL +N++A
Sbjct: 522 A-EILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYA 580

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
             G WD+ A++R ++ ++ +KKV   + IE+ G  H  L      P     Y +L EVD
Sbjct: 581 GAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVD 639



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 20/279 (7%)

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            AR  F +   +D V++ A+IT YV  G +  A  LF+ +P ++V +WNAMI  Y ++G 
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGR 243

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYK 277
              A+     M ++  +PN++T   +L++C       L   +   +   GF     LT  
Sbjct: 244 FEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNA 303

Query: 278 -----CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
                C C           + + AR  F+ +E KDV+SW  MI  YS      +   LF 
Sbjct: 304 LIDMYCKCG----------ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFE 353

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML+S  KP+++TF+G+L  C+  G ++ G+     + +       A  ++ L D+  + 
Sbjct: 354 VMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKC 413

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           G ++ A RV   M  H R+     A+L    +HG    A
Sbjct: 414 GCIEAAERVFRSM--HSRNLASWNAMLSGFAMHGHAERA 450



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 63/306 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G++  A  +FD+ S  D VS  ++IT ++    L  A  LF  +P   +++V+ +A
Sbjct: 176 YASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIP--VKDVVSWNA 233

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVY--------------------------SW----- 92
           MI GYV++GR +EA   F E+ E NV                           SW     
Sbjct: 234 MISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNG 293

Query: 93  --------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----IAK 140
                    +LI  Y K  + D  R LFD   ++ K+V+SW T++ G ++  L    +A 
Sbjct: 294 FGSNLQLTNALIDMYCKCGETDIARELFD--GIEEKDVISWNTMIGGYSYLSLYEEALAL 351

Query: 141 LEVISWTTM-------------CTGLERNAMTKLAREYFVQ--MPNKDIVAWNAMITAYV 185
            EV+  + +             C  L    + K    Y  +    + +   W ++I  Y 
Sbjct: 352 FEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYA 411

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCT 244
             G +  A  +F  M  RN+ +WNAM+  +A +G    A+ L + M  +  F P++ T  
Sbjct: 412 KCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFV 471

Query: 245 SILTSC 250
            +L++C
Sbjct: 472 GVLSAC 477



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 53/276 (19%)

Query: 187 AGNMAQASELFNLMPQR---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +G+++ A  LF    Q    NV+ WN++I  Y+ +    +++ L + M      PN  T 
Sbjct: 75  SGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTF 134

Query: 244 TSILTSC-------EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             +  SC       EG  + + AHAL + L F      +       V   +    +++ A
Sbjct: 135 PFLFKSCTKAKATHEG--KQLHAHALKLALHFNPHVHTS-------VIHMYASVGEMDFA 185

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA------------------------ 332
           RL F++   +D VS+TA+I  Y + G      RLF                         
Sbjct: 186 RLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE 245

Query: 333 -------RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
                   M ++   P++ T V VLS C H    E G K      R  GF    +  + L
Sbjct: 246 EAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNAL 304

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            D+  + G+   A  +   +   E+D +    ++G 
Sbjct: 305 IDMYCKCGETDIARELFDGI--EEKDVISWNTMIGG 338


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 163/546 (29%), Positives = 262/546 (47%), Gaps = 66/546 (12%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA  +FD++  P       M+  + +NH L +A  LFR +P   +++V+ +++I G +
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIP--FKDVVSWNSIIKGCL 128

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
             G +  ARK+FDE+    V SWT+L+ G  +   V E   LF  M    ++V +W  ++
Sbjct: 129 HCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMI 188

Query: 130 LGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQM---------- 169
            G   NG +             +VISW++M  GL+ N  ++ A   F  M          
Sbjct: 189 HGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSG 248

Query: 170 -------PNKDIVAWN-----------------------AMITAYVDAGNMAQASELFNL 199
                      I AW                        +++T Y     M  A  +F  
Sbjct: 249 VLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGE 308

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-- 257
           +  ++V  W A++  Y  N     A+++   M +   +PNE++ TS L SC G LE++  
Sbjct: 309 VVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCG-LEDIER 367

Query: 258 --LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
             + HA A+++G E    +       Y     G+   V+ A   F+ +  K+VVSW ++I
Sbjct: 368 GKVIHAAAVKMGLESGGYVGGSLVVMYS--KCGY---VSDAVYVFKGINEKNVVSWNSVI 422

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
           +  + HG G     LF +ML+ G  PD IT  G+LS CSH+G+++K R  F    +    
Sbjct: 423 VGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSV 482

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
               EHY+ + D+L R G+++EA  VV  MP      V L ALL ACR H ++ +A    
Sbjct: 483 TLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWL-ALLSACRKHSNLDLAKRAA 541

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VKKVASFSQIEVKGKDHT 493
            ++ E++P  S AYVL +N++A+   W E A +R+KM+    VKK  S S + +KG+ H 
Sbjct: 542 NQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGS-SWLTLKGQKHK 600

Query: 494 LLAPMR 499
            L+  R
Sbjct: 601 FLSADR 606



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 155/403 (38%), Gaps = 105/403 (26%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           L+  +   R +DE R +FD++P                          V  +T M     
Sbjct: 61  LLFHHLNNRSLDEARAIFDQIPTP-----------------------HVSLYTIMLHAYA 97

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV--WT----- 207
           +N   + A + F ++P KD+V+WN++I   +  G++  A +LF+ MP+R V  WT     
Sbjct: 98  QNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDG 157

Query: 208 --------------------------WNAMIDRYARNGPEGAAMKLLNLM---------- 231
                                     WNAMI  Y  NG    A++L   M          
Sbjct: 158 LLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSS 217

Query: 232 -----------FQSRFMPNETTCTSILTSCEGMLENMLAHALAI---RLGFEQETSLTYK 277
                       Q+  +  +   + +  S  G+L   L+ A  I   R+G +   S+   
Sbjct: 218 MIAGLDHNGKSEQALVLFRDMVASGVCLS-SGVLVCGLSAAAKIPAWRVGIQIHCSV--- 273

Query: 278 CTCHYVFWDWGFQLDVNSARLAF----ERLEA----------KDVVSWTAMILAYSNHGH 323
               +   DW F   V+++ + F    +++EA          K VV WTA++  Y  +  
Sbjct: 274 ----FKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDK 329

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   +F  M++    P+E +F   L+ C     +E+G K  +  +   G +       
Sbjct: 330 HREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERG-KVIHAAAVKMGLESGGYVGG 388

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L  +  + G V +A+ V   +  +E++ V   +++  C  HG
Sbjct: 389 SLVVMYSKCGYVSDAVYVFKGI--NEKNVVSWNSVIVGCAQHG 429


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/581 (27%), Positives = 271/581 (46%), Gaps = 102/581 (17%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------------------- 51
           +AT + D + +P+  S +++I  F + H    A + F  M                    
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 52  ------PESQRNIVA-----------ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                 P  Q + +A           +S+++  Y+K  ++ +A +VFD ++E +V SW++
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSA 185

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           L++ Y +   VDE +RLF  M       N++SW  ++ G  H+GL ++  ++       G
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 153 LE-------------------------------------------------RNAMTKLAR 163
            E                                                 + + T    
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNG 219
           + F QM + D+ + NA I      G +  +  LF  +  +    NV +W +MI   ++NG
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTY 276
            +  A++L   M  +   PN  T   +L +C     ++    AH  ++R G   +  +  
Sbjct: 366 RDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGS 425

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y          + ++R+ F+ +  K++V W A+I  Y+ HG   +   +F  M +
Sbjct: 426 ALIDMYAKCG-----RIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQR 480

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           SG KPD I+F  VLS CS +GL E+G   FN MS  YG + R EHY+C+  +L RAG+++
Sbjct: 481 SGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLE 540

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           +A  ++ +MP +  D  V GALL +CR+H +V + +   E+L EL+PS+ G Y+L +N++
Sbjct: 541 QAYAMIRRMPVNP-DACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIY 599

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           A++G W+E  +VR  M+ + ++K    S IEVK K H LLA
Sbjct: 600 ASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLA 640



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 109/221 (49%), Gaps = 12/221 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y +    A A+ + +L+P+ NV++++ +I  +++      A+   + M     MP+
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
                S + +C G+     A   H +A   GF+ ++ +       Y+  +      +  A
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCN-----QIRDA 168

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F+R+   DVVSW+A++ AY+  G   +  RLF+ M  SG +P+ I++ G+++  +H+
Sbjct: 169 HRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHS 228

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           GL  +    F L     GF+P     + ++ +L   G +++
Sbjct: 229 GLYSEAVLMF-LDMHLRGFEPDG---TTISSVLPAVGDLED 265



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 115/292 (39%), Gaps = 67/292 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G      E +++FD+M   D  SC + I    RN  +  +  LFR + +   + N+V+ 
Sbjct: 295 YGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSW 354

Query: 62  SAMIDGYVKAGRVDEARKVFDEI------------------------------------- 84
           ++MI    + GR  EA ++F E+                                     
Sbjct: 355 TSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLR 414

Query: 85  --YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI---- 138
                +VY  ++LI  Y K  ++   R  FD +P   KN+V W  V+ G A +G      
Sbjct: 415 RGISTDVYVGSALIDMYAKCGRIQASRICFDGIP--TKNLVCWNAVIAGYAMHGKAKEAM 472

Query: 139 ----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITA 183
                      K ++IS+T + +   ++ +T+    YF  M +K      +  +  M+T 
Sbjct: 473 EIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTL 532

Query: 184 YVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARNGPEG--AAMKLLNL 230
              AG + QA  +   MP   +   W A++   R   N   G  AA KL  L
Sbjct: 533 LSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFEL 584



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
           AHA  ++ G   +T L  K   HY        +    A L  + +   +V S++ +I A+
Sbjct: 35  AHAHILKTGLFNDTHLATKLLSHY-----ANNMCFADATLVLDLVPEPNVFSFSTLIYAF 89

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           S           F++ML  G  PD       +  C+    ++  R+   + S + GF   
Sbjct: 90  SKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVS-GFDSD 148

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           +   S L  +  +  Q+++A RV  +M   E D V   AL+ A
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRM--FEPDVVSWSALVAA 189


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 238/467 (50%), Gaps = 47/467 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++ID Y +   V+ A+K+FDE+   +  SW  +ISGY + R+ ++    F  M  +   
Sbjct: 236 NSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNE 295

Query: 122 VVSWTTVVLGCAHNGLIAKLEV-----------ISWTTMCTGLERNAMTK-----LAREY 165
                TVV   +    +  LE+           + +TT       +   K     +AR  
Sbjct: 296 KPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNI 355

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F +M  K+++ W +MI+ Y++ G++ +A +LF+  P R+V  W AMI+ Y +      A+
Sbjct: 356 FDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAV 415

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC------------EGML-ENMLAHALAIRLGFEQET 272
            L   M   +  P++ T  ++LT C             G L EN +   + +     +  
Sbjct: 416 ALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMY 475

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S   KC C            V+ +   F  LE KD  SWT++I   + +G   +  RLF+
Sbjct: 476 S---KCGC------------VDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFS 520

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M + G KPD+ITF+GVLS CSH GLVE+GR+ FN M + +  +P+ EHY C+ D+L RA
Sbjct: 521 EMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRA 580

Query: 393 GQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           G + EA  ++ ++P    + VV   GALL ACR+H +V M + + ++L  ++   S  + 
Sbjct: 581 GLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHT 640

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           L AN++A+   W++  +VR+KM E  VKK+   S IEV G  H  L 
Sbjct: 641 LLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLV 687



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 59/303 (19%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------SQRNIVA--- 60
           V+ A KLFDEM+  D VS   MI+ ++R      A   FR M +       +  +V+   
Sbjct: 248 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 307

Query: 61  ----------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                       ++A++D Y K G ++ AR +FDE+   NV  W
Sbjct: 308 ACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICW 367

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH----NGLIA--------- 139
           TS+ISGY     + E R LFD+ P  +++VV WT ++ G       +  +A         
Sbjct: 368 TSMISGYINCGDLREARDLFDKSP--VRDVVLWTAMINGYVQFHHFDDAVALFREMQIQK 425

Query: 140 ----KLEVISWTTMCTGLERNAMTKLAREYFVQ-MPNKDIVAWNAMITAYVDAGNMAQAS 194
               K  V++  T C  L      K    Y  +     D+V   A+I  Y   G + ++ 
Sbjct: 426 IKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSL 485

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--G 252
           E+F  +  ++  +W ++I   A NG    A++L + M +    P++ T   +L++C   G
Sbjct: 486 EIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGG 545

Query: 253 MLE 255
           ++E
Sbjct: 546 LVE 548



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 68/358 (18%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           +FR   E  R+ + +          G +  A K+F+ + + +++ +  ++  Y K   + 
Sbjct: 120 IFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILR 179

Query: 107 EGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           +   LF ++            P  LK +     V  G    G I K          TG++
Sbjct: 180 KVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVK----------TGMD 229

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                             D   +N++I  Y +  N+  A +LF+ M  R+  +WN MI  
Sbjct: 230 L-----------------DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 272

Query: 215 YAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM----LENMLAHALAIRLGFE 269
           Y R    E A      +  +    P+E T  S L++C  +    L + + + +   LGF 
Sbjct: 273 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 332

Query: 270 QET-----SLTYKCTCHYV---FWD---------WGFQL-------DVNSARLAFERLEA 305
                    +  KC C  +    +D         W   +       D+  AR  F++   
Sbjct: 333 TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPV 392

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
           +DVV WTAMI  Y    H      LF  M     KPD+ T V +L+ C+  G +E+G+
Sbjct: 393 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGK 450



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           GN+  A ++FN +   +++ +N M+  YA+ G     + L   + +    P+  T   +L
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAK 306
            +  G L + +     +R GF  +T +      +    D  ++L +V +A+  F+ +  +
Sbjct: 205 KAI-GCLRD-VRQGEKVR-GFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTR 261

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKT 365
           D VSW  MI  Y            F  M + G  KPDE T V  LS C+    +E G + 
Sbjct: 262 DSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEI 321

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            N + +  GF  R ++   L D+  + G +  A  +  +M
Sbjct: 322 HNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 359



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  +FDEMS  + +   SMI+ ++   DL +A  LF   P   R++V  +AMI+G
Sbjct: 347 GCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSP--VRDVVLWTAMING 404

Query: 68  YVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRL---FDRMPLKLK 120
           YV+    D+A  +F E+     + + ++  +L++G  +   +++G+ +    D   + + 
Sbjct: 405 YVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMD 464

Query: 121 NVVSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQM-- 169
            VV    + +    GC    L     +   +  SWT++  GL  N  T  A   F +M  
Sbjct: 465 VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMER 524

Query: 170 --PNKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEG 222
                D + +  +++A    G + +    FN M      +  V  +  +ID   R G   
Sbjct: 525 VGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLD 584

Query: 223 AAMKLL 228
            A +L+
Sbjct: 585 EAEELI 590


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 263/532 (49%), Gaps = 67/532 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT-------------VFLR----------------- 37
           G V+ A  LFDE+S+PD VS  SMI              +F++                 
Sbjct: 244 GGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVL 303

Query: 38  -------NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                  N  L +A   F         +V  + ++D Y K G ++ A +VF ++ +  + 
Sbjct: 304 VACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIV 363

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWTS+I+ Y +     +   LFD M  K    ++ + T++V  CA +  + K   +    
Sbjct: 364 SWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV 423

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +  G+  N            +P       NA+I  Y   G++ +A  +F+ +P +++ +W
Sbjct: 424 IKNGMGSN------------LP-----VTNALINMYAKCGSVEEARLVFSKIPVKDIVSW 466

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR 265
           N MI  Y++N     A++L  L  Q +F P++ T   +L +C G+    +    H   +R
Sbjct: 467 NTMIGGYSQNLLPNEALELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILR 525

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G+  +  L   C    ++   G  +    A+L F+ +  KD++SWT MI  Y  HG G 
Sbjct: 526 RGYFSD--LHVACALVDMYAKCGLLV---LAQLLFDMIPKKDLISWTVMIAGYGMHGFGN 580

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +    F  M  +G +PDE +F  +L+ CSH+GL+ +G K FN M    G +P+ EHY+C+
Sbjct: 581 EAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACV 640

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L R G + +A + +  MP  + D  + G LL  CR+H DV++A+ + E + EL+P +
Sbjct: 641 VDLLARMGNLSKAYKFIESMPI-KPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDN 699

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +  YV+ ANV+A   +W+E  ++RK+M++R  K+    S IEV GK +  +A
Sbjct: 700 TRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 751



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 32/360 (8%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVS 124
           YV  G + + RK+FD+I    V+ W  L+S Y K     E   LF +M  KL    N  +
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ-KLGVVGNCYT 197

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           +T V+   A  G + + + +    +  G   N                     N++I AY
Sbjct: 198 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT-----------------AVVNSLIAAY 240

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G +  A  LF+ + + +V +WN+MI+    NG  G  +++   M       + TT  
Sbjct: 241 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 300

Query: 245 SILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           S+L +C  +    L    H   ++  F +E  + +  T   ++   G   ++N A   F 
Sbjct: 301 SVLVACANIGNLSLGRALHGFGVKACFSEE--VVFSNTLLDMYSKCG---NLNGATEVFV 355

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           ++    +VSWT++I AY   G       LF  M   G +PD  T   ++  C+ +  ++K
Sbjct: 356 KMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDK 415

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR   + + +  G        + L ++  + G V+EA  V SK+P   +D V    ++G 
Sbjct: 416 GRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV--KDIVSWNTMIGG 472



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 11/230 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  YV+ G++ Q  ++F+ +    V+ WN ++  YA+ G    ++ L   M +   + N
Sbjct: 135 LVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGN 194

Query: 240 ETTCTSILTSCEGML----ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             T T +L  C   L    E    H   ++LGF   T++       Y  + +G    V S
Sbjct: 195 CYTFTCVL-KCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAY--FKFG---GVES 248

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F+ L   DVVSW +MI     +G       +F +ML  G + D  T V VL  C++
Sbjct: 249 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACAN 308

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            G +  GR       +A  F       + L D+  + G +  A  V  KM
Sbjct: 309 IGNLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 222/435 (51%), Gaps = 45/435 (10%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + + +   SLISGY  +   D   RLFD    + K+VV+WT ++ G   NG  ++  V  
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFD--GAEDKDVVTWTAMIDGFVRNGSASEAMVYF 192

Query: 146 WTTMCTGLERNAMT--------------KLARE----YFVQMPNK-DIVAWNAMITAYVD 186
                TG+  N MT              +  R     Y      K D+   ++++  Y  
Sbjct: 193 VEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGK 252

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
                 A ++F+ MP RNV TW A+I  Y ++      M +   M +S   PNE T +S+
Sbjct: 253 CSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSV 312

Query: 247 LTSCE---GMLENMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQLDVNSA 296
           L++C     +      H   I+   E  T+       L  KC C            +  A
Sbjct: 313 LSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------LEEA 360

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L FERL  K+V +WTAMI  ++ HG+    F LF  ML S   P+E+TF+ VLS C+H 
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLVE+GR+ F  M   +  +P+A+HY+C+ D+  R G ++EA  ++ +M P E  +VV G
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERM-PMEPTNVVWG 479

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           AL G+C LH D  +  Y   R+I+LQPS SG Y L AN+++    WDE A+VRK+M +++
Sbjct: 480 ALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539

Query: 476 VKKVASFSQIEVKGK 490
           V K   FS IEVKGK
Sbjct: 540 VVKSPGFSWIEVKGK 554



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 61/313 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +  +G    A++LFD     D V+  +MI  F+RN    +A   F  M ++       
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + ++   S+++D Y K    D+A+KVFDE
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDE 265

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
           +   NV +WT+LI+GY ++R  D+G  +F+ M LK     N  + ++V+  CAH G + +
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHR 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +    +   +E N                   A   +I  YV  G + +A  +F  +
Sbjct: 325 GRRVHCYMIKNSIEINT-----------------TAGTTLIDLYVKCGCLEEAILVFERL 367

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
            ++NV+TW AMI+ +A +G    A  L   M  S   PNE T  ++L++C   G++E   
Sbjct: 368 HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR 427

Query: 259 AHALAIRLGFEQE 271
              L+++  F  E
Sbjct: 428 RLFLSMKGRFNME 440


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 169/584 (28%), Positives = 284/584 (48%), Gaps = 88/584 (15%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           F  +G + +A  +F++M Q D  S  SMI+ F ++    +A   F  M            
Sbjct: 95  FTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSF 154

Query: 52  -------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         ++   SA++D Y K GRV+ A+ VFDE+  
Sbjct: 155 GSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV 214

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEV 143
            +  SW SLI+ Y +   VDE  ++F  M +K     + V+  +VV  CA    I + + 
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEM-IKCGVEPDEVTLASVVSACATISAIKEGQQ 273

Query: 144 I-SWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAG 188
           I +    C          NA+  +         AR  F  MP + +V+  +M++ Y  A 
Sbjct: 274 IHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKAS 333

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A  +F+ M  ++V TWNA+I    +NG    A+ L  L+ +    P   T  ++L 
Sbjct: 334 KVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLN 393

Query: 249 SCEGMLENML---AHALAIRLGFE----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           +C  + +  L   AH+  ++ GF     +++ +    +   ++   G    V +    F+
Sbjct: 394 ACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCG---SVENGCRVFQ 450

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KD VSW AMI+ Y+ +G G +   +F +ML+SG  PD +T +GVL  CSHAGL+++
Sbjct: 451 HMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDE 510

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR  F  M+  +G  P  +HY+C+ D+L RAG ++EA  ++ +M   + D +V G+LL A
Sbjct: 511 GRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEM-SMQPDAIVWGSLLAA 569

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVA 480
           C++H ++++ +Y+ ++L+E+ P +SG YVL +N++A   +W    +VRK M +R V K  
Sbjct: 570 CKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQP 629

Query: 481 SFSQIEVKG---------KDH-----------TLLAPMREMGYV 504
             S IE++G         K H           T+L  M++ GYV
Sbjct: 630 GCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYV 673



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 186/434 (42%), Gaps = 60/434 (13%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           D  +  A     P +    + ++ +ID Y K G VD ARK+FD + E N++SW S+I  +
Sbjct: 37  DTSRVHACIIKSPFASETFI-QNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAF 95

Query: 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------------LIAKLE 142
            K+  +D+   +F++MP    +  SW +++ G   +G                 L+ +  
Sbjct: 96  TKSGFLDDAVHIFEKMP--QVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYS 153

Query: 143 VISWTTMCTGLERNAM-TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             S  + C GL+   + +++    +      D+   +A++  Y   G +  A  +F+ M 
Sbjct: 154 FGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMT 213

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENML 258
            R+  +WN++I  Y +NGP   A+K+   M +    P+E T  S++++C     + E   
Sbjct: 214 VRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273

Query: 259 AHALAIRLG-FEQETSLTYKCTCHY----------VFWD----------------WGFQL 291
            HA  ++   F  +  L       Y          + +D                +    
Sbjct: 274 IHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKAS 333

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            V  AR  F  +  KDV++W A+I   + +G   +   LF  + +    P   TF  +L+
Sbjct: 334 KVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLN 393

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS------CLADILRRAGQVKEAMRVVSKM 405
            C++   ++ GR+  + + + +GF+ +    S       L D+  + G V+   RV   M
Sbjct: 394 ACANLADLQLGRQAHSHVLK-HGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHM 452

Query: 406 PPHERDHVVLGALL 419
              E+D V   A++
Sbjct: 453 L--EKDCVSWNAMI 464



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 47/272 (17%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S +    KVK A  +F  M   D ++  ++I    +N +  +A  LFR +         
Sbjct: 326 VSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTH 385

Query: 56  ---RNIVAESAMIDGYVKAGRVDEARKV-----FDEIYEGNVYSWTSLISGYFKARQVDE 107
               N++   A +   ++ GR   +  +     F    + +V+   SLI  Y K   V+ 
Sbjct: 386 YTFGNLLNACANL-ADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVEN 444

Query: 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYF 166
           G R+F  M    K+ VSW  +++G A NG   K LEV      C  LE            
Sbjct: 445 GCRVFQHML--EKDCVSWNAMIVGYAQNGFGNKALEVF-----CKMLESG---------- 487

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELF-------NLMPQRNVWTWNAMIDRYARNG 219
            + P  D V    ++ A   AG + +    F        LMP ++ +T   M+D   R G
Sbjct: 488 -EAP--DHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYT--CMVDLLGRAG 542

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
               A    NL+ +    P+     S+L +C+
Sbjct: 543 YLEEAK---NLIEEMSMQPDAIVWGSLLAACK 571


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 230/446 (51%), Gaps = 28/446 (6%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTT 127
           G +  AR++FDE    +V SW +LI GY ++    E   LF R+      V    V+   
Sbjct: 170 GPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIG 229

Query: 128 VVLGCAHNG---LIAKLE--VISWTTMCTGLERNAMT---------KLAREYFVQMPNKD 173
            V GCA  G   L  +L   V +    CT    NA+          +LA   F ++ N+ 
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRT 289

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V+W  MI  +   G M  A  LF+ MP+R+V+ WNA++  Y +N     A+ L + M +
Sbjct: 290 AVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQK 349

Query: 234 SRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           S+  PNE T  ++L++C   G LE  M  H    R       +L       Y        
Sbjct: 350 SKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCG---- 405

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  A   F  +  ++ ++WT+MI   +NHGH  +    F RM+  G +PDEITF+GVL
Sbjct: 406 -NIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C HAGLVE GR+ F+LM   Y  + + +HYSC+ D+L RAG + EA ++V+ M P + 
Sbjct: 465 SACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAM-PMDP 523

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D VV GAL  ACR+HG++ + +    +L+EL PS SG YVL AN++A      +  +VR 
Sbjct: 524 DAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRV 583

Query: 471 KMERR-VKKVASFSQIEVKGKDHTLL 495
            M    V+KV   S IE+ G  H  +
Sbjct: 584 MMRHLGVEKVPGCSCIELNGVVHEFI 609



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 147/345 (42%), Gaps = 41/345 (11%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+   NA +  +   G MA A  LF+  P R+V +WN +I  Y R+G    A++L   
Sbjct: 153 SADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWR 212

Query: 231 MFQ--SRFMPNETTCTSILTSCEGMLENMLAHALA----------------------IRL 266
           + +  +   P+E T    ++ C  M +  L   L                       ++ 
Sbjct: 213 LAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKC 272

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLD-------VNSARLAFERLEAKDVVSWTAMILAYS 319
           G  +  +  ++   +     W   +        +  AR+ F+ +  +DV  W A++  Y 
Sbjct: 273 GSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYV 332

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +  G +   LF  M KS   P+EIT V +LS CS  G +E G    + + R +      
Sbjct: 333 QNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDR-HKLHLSV 391

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
              + L D+  + G +K+A+ V +++P   ++ +   +++     HG    A    +R+I
Sbjct: 392 ALGTSLVDMYAKCGNIKKAICVFNEIP--VQNALTWTSMICGLANHGHADEAIEYFQRMI 449

Query: 440 E--LQPSS-SGAYVLSANVHA----ARGEWDEFAQVRKKMERRVK 477
           +  LQP   +   VLSA  HA    A  ++      +  +ER++K
Sbjct: 450 DLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMK 494



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 30/277 (10%)

Query: 7   TGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
           +G  +EA +LF  +++      PD V+    ++   +  DL   + L   +     +  +
Sbjct: 200 SGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTV 259

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              +A++D YVK G ++ A  VF+ I      SWT++I G+ +   +++ R LFD MP  
Sbjct: 260 RLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMP-- 317

Query: 119 LKNVVSWTTVVLGCAHN-------GLIAKLE----------VISWTTMCTGLERNAMTKL 161
            ++V  W  ++ G   N        L  +++          +++  + C+ L    M   
Sbjct: 318 ERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMW 377

Query: 162 AREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
              Y  +   +  +    +++  Y   GN+ +A  +FN +P +N  TW +MI   A +G 
Sbjct: 378 VHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGH 437

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
              A++    M      P+E T   +L++C   G++E
Sbjct: 438 ADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVE 474


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 226/434 (52%), Gaps = 26/434 (5%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVS 124
           A  +F +I   N++ +  LI  +    +  +    + +M            P  +K    
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 125 WTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
              VV+G   +  I +     +V    ++        +   A   F QMP +D+V+W +M
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G +  A E+F+ MP RN++TW+ MI+ YA+N     A+ L  LM +   + NE
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANE 251

Query: 241 TTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           T   S+++SC   G LE    AH   ++       +L        ++W  G   ++  A 
Sbjct: 252 TVMVSVISSCAHLGALEFGERAHEYVVKS--HMTVNLILGTALVDMYWRCG---EIEKAI 306

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE L  KD +SW+++I   + HGH  +    F++M++ G  P +IT   VLS CSH G
Sbjct: 307 RVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGG 366

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LV+KG + +  M R YG +PR EHY C+ D+L RAG++ EA   + KMP  + +  +LGA
Sbjct: 367 LVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPV-KPNAPILGA 425

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LLGAC+++ +  +A+ +G  LIE++P  SG YVL +N++A  G+W++   +R  M E+ V
Sbjct: 426 LLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLV 485

Query: 477 KKVASFSQIEVKGK 490
           KK   +S IE+ GK
Sbjct: 486 KKPPGWSLIEIDGK 499



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 20/214 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q ++  E++++  Y   G +  A ++F ++   +V SWTS+++GY K   V++ R +FD 
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 115 MPLKLKNVVSWTTVVLGCAHN----------------GLIAKLEV-ISWTTMCTGLERNA 157
           MP   +N+ +W+ ++ G A N                G++A   V +S  + C  L    
Sbjct: 211 MP--HRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALE 268

Query: 158 MTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             + A EY V+     +++   A++  Y   G + +A  +F  +P ++  +W+++I   A
Sbjct: 269 FGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLA 328

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +G    A+   + M +  F P + T T++L++C
Sbjct: 329 VHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSAC 362



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 137/322 (42%), Gaps = 47/322 (14%)

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL-- 247
           +  A  +F+ +   N++ +N +I  ++       A      M +SR  P+  T   ++  
Sbjct: 69  LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 128

Query: 248 -TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            T  E ++     H+  +R GF+ +  +       +++ + G    + +A   F ++  +
Sbjct: 129 STEMECVVVGEQTHSQIVRFGFQNDVYVENSLV--HMYANCGL---IAAAGRIFGQMPFR 183

Query: 307 DVVSWTAMILAYSNHG------------------------HGF-------QVFRLFARML 335
           DVVSWT+M+  Y   G                        +G+       +   LF  M 
Sbjct: 184 DVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMK 243

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G   +E   V V+S C+H G +E G +    + +++         + L D+  R G++
Sbjct: 244 REGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSH-MTVNLILGTALVDMYWRCGEI 302

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS---SGAYVLS 452
           ++A+RV  ++P  ++D +   +++    +HG    A +   +++ L  S    +   VLS
Sbjct: 303 EKAIRVFEELP--DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLS 360

Query: 453 ANVHAARGEWDEFAQVRKKMER 474
           A  H   G  D+  ++ + M+R
Sbjct: 361 ACSHG--GLVDKGLEIYENMKR 380



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 57/236 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G V++A ++FDEM   +  + + MI  + +N+   KA  LF  M                
Sbjct: 199 GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVI 258

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     N++  +A++D Y + G +++A +VF+E+ + +  
Sbjct: 259 SSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSL 318

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           SW+S+I G        +    F +M ++L      ++ T V+  C+H GL+ K       
Sbjct: 319 SWSSIIKGLAVHGHAHKAIHYFSQM-VRLGFSPRDITLTAVLSACSHGGLVDK------- 370

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
               GLE      + R+Y ++     +  +  ++     AG +A+A      MP +
Sbjct: 371 ----GLE--IYENMKRDYGIE---PRLEHYGCIVDMLGRAGKLAEAENFILKMPVK 417


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 244/466 (52%), Gaps = 38/466 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+  ++A++  Y   G +D AR VFD   + +V+SW  +ISGY + ++ +E   L   M 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 117 LKLKNVVSWTTVVL-----GCAH---NGLIAKL-EVISWTTMCTGLE-RNAMTK------ 160
              +N+VS T+V L      C+      L  ++ E +S       L   NA+        
Sbjct: 229 ---RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACG 285

Query: 161 ---LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
              +A   F  M  +D+++W +++  YV+ GN+  A   F+ MP R+  +W  MID Y R
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQET 272
            G    ++++   M  +  +P+E T  S+LT+C        AH  ++ +G     +  + 
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTAC--------AHLGSLEIGEWIKTYIDKN 397

Query: 273 SLTYKCTCHYVFWDWGFQLDVNS-ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            +           D  F+   +  A+  F  ++ +D  +WTAM++  +N+G G +  ++F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M     +PD+IT++GVLS C+H+G+V++ RK F  M   +  +P   HY C+ D+L R
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG VKEA  ++ KMP +  + +V GALLGA RLH D  MA+   ++++EL+P +   Y L
Sbjct: 518 AGLVKEAYEILRKMPMNP-NSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             N++A    W +  +VR+K+ +  +KK   FS IEV G  H  +A
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 29/295 (9%)

Query: 11  KEATKLFDEMSQP--DPVSCASMITVF----LRNHDLPKAEALFRAMPESQRNIVAESAM 64
           +E+ +L  EM +    P S   ++ +     +++ DL K    + +  +++ ++  E+A+
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           ++ Y   G +D A ++F  +   +V SWTS++ GY +   +   R  FD+MP  +++ +S
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP--VRDRIS 335

Query: 125 WTTVV-----LGCAHN-----------GLIA-KLEVISWTTMCTGLERNAMTKLAREYFV 167
           WT ++      GC +            G+I  +  ++S  T C  L    + +  + Y  
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395

Query: 168 QMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           +   K D+V  NA+I  Y   G   +A ++F+ M QR+ +TW AM+   A NG    A+K
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLT-YKC 278
           +   M      P++ T   +L++C   GM++        +R     E SL  Y C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 47/323 (14%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G V  A K+F +I E +V  W ++I G+ K     EG RL+  M   LK  V+  +   
Sbjct: 81  GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM---LKEGVTPDSHTF 137

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTK--LAREYFVQMPNKDIVAWNAMITAYVDAG 188
               NGL      ++    C       + K  L    +VQ         NA++  Y   G
Sbjct: 138 PFLLNGLKRDGGALA----CGKKLHCHVVKFGLGSNLYVQ---------NALVKMYSLCG 184

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            M  A  +F+   + +V++WN MI  Y R      +++LL  M ++   P   T   +L+
Sbjct: 185 LMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLS 244

Query: 249 SCEGM-----------------------LENMLAHALA----IRLGFEQETSLTYKCTCH 281
           +C  +                       LEN L +A A    + +      S+  +    
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304

Query: 282 YVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           +     G+  + ++  AR  F+++  +D +SWT MI  Y   G   +   +F  M  +G 
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364

Query: 340 KPDEITFVGVLSDCSHAGLVEKG 362
            PDE T V VL+ C+H G +E G
Sbjct: 365 IPDEFTMVSVLTACAHLGSLEIG 387



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 70/272 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +K A   FD+M   D +S   MI  +LR     ++  +FR M  +             
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + ++V  +A+ID Y K G  ++A+KVF ++ + + +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +WT+++ G     Q  E  ++F +M  + ++ + +++  V+  C H+G++ +        
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ-------- 487

Query: 149 MCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                        AR++F +M +       +V +  M+     AG + +A E+   MP  
Sbjct: 488 -------------ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN 534

Query: 204 -NVWTWNAMI--DRYARNGP--EGAAMKLLNL 230
            N   W A++   R   + P  E AA K+L L
Sbjct: 535 PNSIVWGALLGASRLHNDEPMAELAAKKILEL 566



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 111/285 (38%), Gaps = 52/285 (18%)

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           SIL  C+   +    H+ +I  G     +   K    +VFW       V+ A   F ++ 
Sbjct: 39  SILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKL---FVFWCSRLGGHVSYAYKLFVKIP 95

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGR 363
             DVV W  MI  +S      +  RL+  MLK G  PD  TF  +L+      G +  G+
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGK 155

Query: 364 K------TFNLMSRAYGFKPRAEHYS---------------CLADIL---------RRAG 393
           K       F L S  Y      + YS               C  D+           R  
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215

Query: 394 QVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGD----VRMADYIGERLIELQPS 444
           + +E++ ++ +M   ER+      V L  +L AC    D     R+ +Y+ E   E    
Sbjct: 216 EYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKG 489
              A V   N +AA GE D   ++ + M+ R   V S++ I VKG
Sbjct: 273 LENALV---NAYAACGEMDIAVRIFRSMKAR--DVISWTSI-VKG 311


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 146/498 (29%), Positives = 263/498 (52%), Gaps = 30/498 (6%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAMIDGYVKAGRVDEARK 79
           QP+ ++ AS+++     +D    + L   +   E   +++  + ++D Y K G +D +++
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG 136
           VF+ + E NV +WTSLISG       +E   +F +M    + + N +   T++  C    
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFI-LATILGVCEGET 240

Query: 137 LIAKLEVISWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMIT 182
            I+  E +   T+ TG+       NA   +         A   F  M   D+++W  MIT
Sbjct: 241 NISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMIT 300

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           ++  +GN+ +A + FN MP+RNV +WNAM+  Y +N      +KL  LM +    P+  T
Sbjct: 301 SFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWIT 360

Query: 243 CTSILTSCEGMLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             +++ +C  +  + L   +   A+++G   + S+       Y          +  A+  
Sbjct: 361 FVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCG-----RIEEAQNL 415

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F+ ++ K+++SW +++  Y+ +G G +V  +F  ML +G KPD IT++ +LS CSH+GLV
Sbjct: 416 FDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLV 475

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           ++ +  FN M++ +G     EH+ C+ D+  RAG +K A+ ++ +M P + +  + GALL
Sbjct: 476 KEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQM-PFKPNASIWGALL 534

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
            ACR+H D  MA+   + L+EL   +  +Y+L AN +++ G  +  ++VR+ M E+RV+K
Sbjct: 535 SACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQK 594

Query: 479 VASFSQIEVKGKDHTLLA 496
               S IEV  + H   A
Sbjct: 595 DPGCSWIEVCNRVHVFTA 612



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 183/436 (41%), Gaps = 65/436 (14%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N V ++++ID Y+K   +  A +VF  I + +++SW  +I GY K  ++      F +M
Sbjct: 26  NNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQM 85

Query: 116 PLKLKNVVSWTTVVLGCAHNGL-IAKLE--VISWTTMCTGLERNAMT------KLAREYF 166
           P   ++ VSW T++   +H+GL I  L   V  W   C   + N+MT        A  Y 
Sbjct: 86  P--ERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC---QPNSMTYASVLSACANIYD 140

Query: 167 VQM------------PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            Q             P  D++  N ++  Y   G +  +  +FN + + NV TW ++I  
Sbjct: 141 FQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISG 200

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFE-- 269
            A  G +     +   M +   + +     +IL  CEG     +    H   ++ G    
Sbjct: 201 IAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSS 260

Query: 270 -----------------QETSLTYKCTCHYVFWDWGFQL-------DVNSARLAFERLEA 305
                            ++ SL ++    +    W   +       +V  AR  F R+  
Sbjct: 261 VPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPE 320

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++V+SW AM+ AY  +    +  +L+  ML+   +PD ITFV ++  CS   + + G + 
Sbjct: 321 RNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQI 380

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
            +   +  G        +    +  R G+++EA  +   +   E++ +   +++G    +
Sbjct: 381 LSQAVKV-GLGSDVSVVNSAITLYSRCGRIEEAQNLFDSI--QEKNLISWNSIMGGYAQN 437

Query: 426 GDVRMADYIGERLIEL 441
           G+       G ++IE+
Sbjct: 438 GE-------GMKVIEI 446



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 68/293 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G  ++A+  F+ M+  D +S  +MIT F  + ++ +A   F  MPE  RN+++ 
Sbjct: 269 SMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPE--RNVISW 326

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVY-SW---------------------------- 92
           +AM+  Y +    +E  K++  +    V   W                            
Sbjct: 327 NAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVK 386

Query: 93  ----------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
                      S I+ Y +  +++E + LFD   ++ KN++SW +++ G A NG   K+ 
Sbjct: 387 VGLGSDVSVVNSAITLYSRCGRIEEAQNLFD--SIQEKNLISWNSIMGGYAQNGEGMKVI 444

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
            I    +  G + + +T +                 A+++    +G + +A   FN M +
Sbjct: 445 EIFQNMLMAGCKPDHITYI-----------------AILSGCSHSGLVKEAKYHFNSMTK 487

Query: 203 R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                  +  +  M+D + R G    A+ +++   Q  F PN +   ++L++C
Sbjct: 488 DFGISVTLEHFVCMVDLFGRAGLLKLALDMID---QMPFKPNASIWGALLSAC 537


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 258/503 (51%), Gaps = 47/503 (9%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAE---ALFRAMPESQRNIVAESAM 64
           EA  LF EM     QPD  +   ++ V  R   L + E   AL           V ++ +
Sbjct: 107 EAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV-KNTL 165

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---N 121
           I  Y   G V+ AR+VFDE+ E NV +W S+ +GY K+   +E  +LF  M L+L    +
Sbjct: 166 IHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEM-LELDIRFD 224

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCT---GLERNAMTKLAREYFVQMPNKDIVAWN 178
            V+  +V+  C   G +A LE+  W        GL+ N                      
Sbjct: 225 EVTLVSVLTAC---GRLADLELGEWINRYVEEKGLKGNP-----------------TLIT 264

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y   G +  A  LF+ M +R+V  W+AMI  Y++      A+ L + M ++   P
Sbjct: 265 SLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDP 324

Query: 239 NETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVN 294
           NE T  SIL+SC   G LE     H       F ++  +    T      D+  +   V 
Sbjct: 325 NEITMVSILSSCAVLGALETGKWVHF------FIKKKRMKLTVTLGTALMDFYAKCGSVE 378

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S+   F ++  K+V+SWT +I   +++G G +    F  ML+   +P+++TF+GVLS CS
Sbjct: 379 SSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACS 438

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV++GR  F  MSR +G +PR EHY C+ DIL RAG ++EA + +  MP  + + V+
Sbjct: 439 HAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPI-QPNAVI 497

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
              LL +C++H +V + +   ++LI L+P+ SG Y+L +N++A+ G W++  +VR +M E
Sbjct: 498 WRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKE 557

Query: 474 RRVKKVASFSQIEVKGKDHTLLA 496
           + +KK    S IE+ G  H   A
Sbjct: 558 KGIKKTPGCSLIELDGVIHEFFA 580



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 56/286 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQP-----------------------------------DPVSC 28
           +   G+V+ A ++FDEMS+                                    D V+ 
Sbjct: 169 YANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTL 228

Query: 29  ASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
            S++T   R  DL   E + R + E   + N    ++++D Y K G+VD AR++FD++  
Sbjct: 229 VSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDR 288

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVI 144
            +V +W+++ISGY +A +  E   LF  M       N ++  +++  CA   ++  LE  
Sbjct: 289 RDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCA---VLGALETG 345

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
            W       +R  +T              +    A++  Y   G++  + E+F  MP +N
Sbjct: 346 KWVHFFIKKKRMKLT--------------VTLGTALMDFYAKCGSVESSIEVFGKMPVKN 391

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           V +W  +I   A NG    A++   LM +    PN+ T   +L++C
Sbjct: 392 VLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSAC 437



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 41/259 (15%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G+V  A +LFD+M + D V+ ++MI+ + +     +A  LF  M ++    N +   +++
Sbjct: 274 GQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSIL 333

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                 G ++  + V   I +      V   T+L+  Y K   V+    +F +MP  +KN
Sbjct: 334 SSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP--VKN 391

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI----VAW 177
           V+SWT ++ G A NG                       K A EYF  M  K++    V +
Sbjct: 392 VLSWTVLIQGLASNG---------------------QGKKALEYFYLMLEKNVEPNDVTF 430

Query: 178 NAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
             +++A   AG + +  +LF  M      +  +  +  M+D   R G    A + +  M 
Sbjct: 431 IGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNM- 489

Query: 233 QSRFMPNETTCTSILTSCE 251
                PN     ++L SC+
Sbjct: 490 --PIQPNAVIWRTLLASCK 506



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 35/210 (16%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F +++  D  ++  MI  ++      +   LF  M ++  +PDE TF  +L  CS    +
Sbjct: 81  FRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQAL 140

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP------------ 407
            +G +   L+ +  GF       + L  +    G+V+ A RV  +M              
Sbjct: 141 SEGEQIHALIMKC-GFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAG 199

Query: 408 --------------HER-------DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
                         HE        D V L ++L AC    D+ + ++I   + E     +
Sbjct: 200 YTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGN 259

Query: 447 GAYVLS-ANVHAARGEWDEFAQVRKKMERR 475
              + S  +++A  G+ D   ++  +M+RR
Sbjct: 260 PTLITSLVDMYAKCGQVDTARRLFDQMDRR 289


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 245/487 (50%), Gaps = 62/487 (12%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSL 95
           D+  A  LF  +PE   ++ + + M  GY +         ++ E+ E NV    Y++  L
Sbjct: 63  DMCYARQLFDTIPEP--SVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFL 120

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI----------------- 138
             G+ ++  +  GR L         +VV +       AHN LI                 
Sbjct: 121 FKGFTRSVALQLGRELH-------CHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFD 173

Query: 139 --AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
              K +V++W  M +G  R                KD+++W A++T +V+ G +  A + 
Sbjct: 174 MSCKSDVVTWNAMISGYNR--------------IKKDVISWTAIVTGFVNTGQVDAARKY 219

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F+ MP+R+  +W AMID Y R      A+ L   M  S+  P+E T  S+LT+C      
Sbjct: 220 FHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTAC------ 273

Query: 257 MLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVS 310
             A   A+ LG     +  +  +           D  F+  +V  A   F  L  +D  +
Sbjct: 274 --AQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFT 331

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTAM++  + +G G +   +F++MLK+   PDE+T+VGVLS C+H G+V++G+K F  M+
Sbjct: 332 WTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMT 391

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
             +G +P   HY C+ D+L +AG +KEA  ++  M P + + +V GALLGACR+H D  M
Sbjct: 392 ARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNM-PMKPNSIVWGALLGACRIHKDAEM 450

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKG 489
           A+   E+++EL+P++   YVL  N++AA  +WD+  ++R+  M+R +KK    S IE+ G
Sbjct: 451 AERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNG 510

Query: 490 KDHTLLA 496
             H  +A
Sbjct: 511 IVHEFVA 517



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 110/288 (38%), Gaps = 58/288 (20%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+M  A +LF+ +P+ +V++WN M   Y+R       + L   M +    P+  T   + 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 248 TS--------------CE----GMLENMLAHALAIRL----GFEQETSLTYKCTCHYVFW 285
                           C     G+  N+ AH   I +    G        +  +C     
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 286 DWGFQLD------------------------VNSARLAFERLEAKDVVSWTAMILAYSNH 321
            W   +                         V++AR  F ++  +D VSWTAMI  Y   
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
               +   LF  M  S  KPDE T V VL+ C+  G +E G        R Y  K + ++
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWI-----RTYIDKNKVKN 296

Query: 382 YS----CLADILRRAGQVKEAMRVVSKMPPHER---DHVVLGALLGAC 422
            +     L D+  + G V+ A+ + + +P  ++     +V+G  +  C
Sbjct: 297 DTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 42/239 (17%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--------RNI 58
           TG+V  A K F +M + D VS  +MI  +LR +   +A  LFR M  S+         ++
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269

Query: 59  VAESAMIDGYVKAGR-----VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           +   A + G ++ G      +D+  KV ++ + GN     +LI  YFK   V+    +F+
Sbjct: 270 LTACAQL-GALELGEWIRTYIDK-NKVKNDTFVGN-----ALIDMYFKCGNVEMALSIFN 322

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGL----------IAKLEV----ISWTTMCTGLERNAMT 159
            +P + K   +WT +V+G A NG           + K  V    +++  + +      M 
Sbjct: 323 TLPQRDK--FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMV 380

Query: 160 KLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
              +++F  M  +     +I  +  M+     AG++ +A E+   MP + N   W A++
Sbjct: 381 DEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALL 439


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 240/449 (53%), Gaps = 29/449 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRM 115
           +I  ++A+I  Y + G + +AR +F+++   ++ SWT++I G  K+    E   +F D  
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 116 PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
              LK N V++T+++  C+    +     I    +  GL  +A                 
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA-------------- 585

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N ++  Y   G++  A ++F+ M QR++  +NAMI  YA +     A+KL + + + 
Sbjct: 586 ---NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 235 RFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              P++ T  ++L +C   G LE     H+L ++ G+  +TSL       Y         
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCG----- 697

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
             + A L F+++  ++V+SW A+I   + HG G  V +LF RM   G KPD +TFV +LS
Sbjct: 698 SFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLS 757

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGL+E+GR+ F  MSR +G  P  EHY C+ D+L RAGQ+ E   ++  M P + +
Sbjct: 758 ACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM-PFQAN 816

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + GALLGACR+HG+V +A+   E  ++L P ++  YV  ++++AA G WD  A++RK 
Sbjct: 817 TRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKL 876

Query: 472 MERR-VKKVASFSQIEVKGKDHTLLAPMR 499
           ME+R V K    S IEV  K H  +A  R
Sbjct: 877 MEQRGVTKEPGRSWIEVGDKLHYFVAEDR 905



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 209/527 (39%), Gaps = 129/527 (24%)

Query: 8   GKVKEATKLFDEMSQ-------------------PDPVSCASMITVFLRNHDLPKAEALF 48
           G ++EA KL  EM Q                   P  + C   I V     +  KA  LF
Sbjct: 223 GYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHV-----EAMKARLLF 277

Query: 49  RAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEG 108
                   ++   + +++ Y K G + EAR+VFD++   +V SWT +I GY      +  
Sbjct: 278 --------DVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIA 329

Query: 109 RRLFDRM---------------------PLKLK----------NVVSWTTVVLGCAHNGL 137
             +F +M                     P  LK          N    + + +G A   +
Sbjct: 330 FEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKM 389

Query: 138 IAKL----------------EVISWTTMCTGLERNAMTKLAREYFVQ------MPNK--- 172
            AK                 ++I+W TM  GL      + A E + Q      MPNK   
Sbjct: 390 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITY 449

Query: 173 ------------------------------DIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                                         DI   NA+I+ Y   G++  A  LFN M +
Sbjct: 450 VILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVR 509

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLA 259
           +++ +W AMI   A++G    A+ +   M Q+   PN  T TSIL +C     +      
Sbjct: 510 KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRI 569

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           H   I  G   +  +       Y          V  AR  F+R+  +D+V++ AMI  Y+
Sbjct: 570 HQQVIEAGLATDAHVANTLVNMYSMCG-----SVKDARQVFDRMTQRDIVAYNAMIGGYA 624

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            H  G +  +LF R+ + G KPD++T++ +L+ C+++G +E  ++  +L+ +  G+    
Sbjct: 625 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD-GYLSDT 683

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              + L     + G   +A+ V  KM   +R+ +   A++G C  HG
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVFDKMM--KRNVISWNAIIGGCAQHG 728



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 212/503 (42%), Gaps = 75/503 (14%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D  +  ++I ++++   + +A  ++  +  ++R + + +AM+ GYV+ G ++EA K+  E
Sbjct: 175 DQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLRE 234

Query: 84  IYEG---------------------------------------NVYSWTSLISGYFKARQ 104
           + +                                        +V     +++ Y K   
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGS 294

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLG---CAHNGLIAKL-----------EVISWTTMC 150
           + E R +FD+M  + K+VVSWT ++ G   C H+ +  ++             I++  + 
Sbjct: 295 IHEAREVFDKM--ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVL 352

Query: 151 TGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                 A  K  +     + N     D+    A++  Y   G+     ++F  +  R++ 
Sbjct: 353 NAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALA 263
            WN MI   A  G    A ++ + M +   MPN+ T   +L +C     +      H+  
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           ++ GF  + S+       Y          +  ARL F ++  KD++SWTAMI   +  G 
Sbjct: 473 VKDGFMFDISVQNALISMYARCG-----SIKDARLLFNKMVRKDIISWTAMIGGLAKSGL 527

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +   +F  M ++G KP+ +T+  +L+ CS    ++ GR+    +  A G    A   +
Sbjct: 528 GAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVAN 586

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--L 441
            L ++    G VK+A +V  +M   +RD V   A++G    H   + A  + +RL E  L
Sbjct: 587 TLVNMYSMCGSVKDARQVFDRMT--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL 644

Query: 442 QPSSSGAYVLSANVHAARG--EW 462
           +P     Y+   N  A  G  EW
Sbjct: 645 KPDKV-TYINMLNACANSGSLEW 666



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 134/282 (47%), Gaps = 32/282 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
           S +   G +K+A  LF++M + D +S  +MI    ++    +A A+F+ M ++  + N V
Sbjct: 489 SMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV 548

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRM 115
             +++++       +D  R++  ++ E     + +   +L++ Y     V + R++FDRM
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608

Query: 116 PLKLKNVVSWTTVVLG-CAHN---------------GLIAKLEVISWTTMCTGLERNAMT 159
               +++V++  ++ G  AHN               GL  K + +++  M      +   
Sbjct: 609 T--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL--KPDKVTYINMLNACANSGSL 664

Query: 160 KLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           + A+E    +       D    NA+++ Y   G+ + A  +F+ M +RNV +WNA+I   
Sbjct: 665 EWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGC 724

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           A++G     ++L   M      P+  T  S+L++C   G+LE
Sbjct: 725 AQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 28/235 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +   G VK+A ++FD M+Q D V+  +MI  +  ++   +A  LF  + E   + + V  
Sbjct: 592 YSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS----LISGYFKARQVDEGRRLFDRMPL 117
             M++    +G ++ A+++   + +    S TS    L+S Y K     +   +FD+M +
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-M 710

Query: 118 KLKNVVSWTTVVLGCAHNG-------LIAKL-------EVISWTTMCTGLERNAMTKLAR 163
           K +NV+SW  ++ GCA +G       L  ++       +++++ ++ +      + +  R
Sbjct: 711 K-RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGR 769

Query: 164 EYFVQMP-----NKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
            YF  M         I  +  M+     AG + +   L   MP Q N   W A++
Sbjct: 770 RYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 153/513 (29%), Positives = 253/513 (49%), Gaps = 34/513 (6%)

Query: 9   KVKEATKLFDEMS-QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           +VKEA +L      +P     +++I   +R+  L     +      S     +   + ++
Sbjct: 70  RVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLL 129

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
           D Y K G + +A+ +FDE+   ++ SW ++I GY K  ++++ R+LFD MP +  +  SW
Sbjct: 130 DMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR--DNFSW 187

Query: 126 TTVVLG-CAHNGLIAKLEVISWTTMCTGLERNAMT--------------KLARE---YFV 167
              + G   HN     LE+            N  T              +L +E   Y +
Sbjct: 188 NAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLI 247

Query: 168 QMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           +   N D V W+A++  Y   G++ +A  +F+ M  R+V +W  MI R   +G       
Sbjct: 248 RTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFL 307

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYV 283
           L   + QS   PNE T   +L +C       L    H   +  G++   S       H +
Sbjct: 308 LFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDP-GSFAISALVH-M 365

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           +   G   +   AR  F  +   D+VSWT++I+ Y+ +G   +    F  +L+SGTKPD+
Sbjct: 366 YSKCG---NTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQ 422

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +T+VGVLS C+HAGLV+KG + F+ +   +G    A+HY+C+ D+L R+G+ KEA  ++ 
Sbjct: 423 VTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIID 482

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP  + D  +  +LLG CR+HG++ +A    + L E++P +   Y+  AN++A  G W 
Sbjct: 483 NMPV-KPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWS 541

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           E A VRK M+   + K    S IE+K + H  L
Sbjct: 542 EVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFL 574



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 59/300 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----------- 56
           G++++A KLFDEM Q D  S  + I+ ++ ++   +A  LFR M   +R           
Sbjct: 167 GRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSA 226

Query: 57  ---------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      + V  SA++D Y K G +DEAR +FD++ + +V
Sbjct: 227 LAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDV 286

Query: 90  YSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWT++I   F+  + +EG  LF D M   ++ N  ++  V+  CA +      + +   
Sbjct: 287 VSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGY 346

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M  G +  +                  A +A++  Y   GN   A  +FN M Q ++ +
Sbjct: 347 MMHAGYDPGSF-----------------AISALVHMYSKCGNTRVARRVFNEMHQPDLVS 389

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIR 265
           W ++I  YA+NG    A+    L+ QS   P++ T   +L++C   G+++  L +  +I+
Sbjct: 390 WTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIK 449


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 244/466 (52%), Gaps = 38/466 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+  ++A++  Y   G +D AR VFD   + +V+SW  +ISGY + ++ +E   L   M 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 117 LKLKNVVSWTTVVL-----GCAH---NGLIAKL-EVISWTTMCTGLE-RNAMTK------ 160
              +N+VS T+V L      C+      L  ++ E +S       L   NA+        
Sbjct: 229 ---RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACG 285

Query: 161 ---LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
              +A   F  M  +D+++W +++  YV+ GN+  A   F+ MP R+  +W  MID Y R
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQET 272
            G    ++++   M  +  +P+E T  S+LT+C        AH  ++ +G     +  + 
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTAC--------AHLGSLEIGEWIKTYIDKN 397

Query: 273 SLTYKCTCHYVFWDWGFQLDVN-SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            +           D  F+   +  A+  F  ++ +D  +WTAM++  +N+G G +  ++F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M     +PD+IT++GVLS C+H+G+V++ RK F  M   +  +P   HY C+ D+L R
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG VKEA  ++ KMP +  + +V GALLGA RLH D  MA+   ++++EL+P +   Y L
Sbjct: 518 AGLVKEAYEILRKMPMNP-NSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             N++A    W +  +VR+K+ +  +KK   FS IEV G  H  +A
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 29/295 (9%)

Query: 11  KEATKLFDEMSQP--DPVSCASMITVF----LRNHDLPKAEALFRAMPESQRNIVAESAM 64
           +E+ +L  EM +    P S   ++ +     +++ DL K    + +  +++ ++  E+A+
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           ++ Y   G +D A ++F  +   +V SWTS++ GY +   +   R  FD+MP  +++ +S
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP--VRDRIS 335

Query: 125 WTTVV-----LGCAHN-----------GLIA-KLEVISWTTMCTGLERNAMTKLAREYFV 167
           WT ++      GC +            G+I  +  ++S  T C  L    + +  + Y  
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395

Query: 168 QMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           +   K D+V  NA+I  Y   G   +A ++F+ M QR+ +TW AM+   A NG    A+K
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLT-YKC 278
           +   M      P++ T   +L++C   GM++        +R     E SL  Y C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 47/323 (14%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G V  A K+F +I E +V  W ++I G+ K     EG RL+  M   LK  V+  +   
Sbjct: 81  GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM---LKEGVTPDSHTF 137

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTK--LAREYFVQMPNKDIVAWNAMITAYVDAG 188
               NGL      ++    C       + K  L    +VQ         NA++  Y   G
Sbjct: 138 PFLLNGLKRDGGALA----CGKKLHCHVVKFGLGSNLYVQ---------NALVKMYSLCG 184

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            M  A  +F+   + +V++WN MI  Y R      +++LL  M ++   P   T   +L+
Sbjct: 185 LMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLS 244

Query: 249 SCEGM-----------------------LENMLAHALA----IRLGFEQETSLTYKCTCH 281
           +C  +                       LEN L +A A    + +      S+  +    
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304

Query: 282 YVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           +     G+  + ++  AR  F+++  +D +SWT MI  Y   G   +   +F  M  +G 
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364

Query: 340 KPDEITFVGVLSDCSHAGLVEKG 362
            PDE T V VL+ C+H G +E G
Sbjct: 365 IPDEFTMVSVLTACAHLGSLEIG 387



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 70/272 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +K A   FD+M   D +S   MI  +LR     ++  +FR M  +             
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + ++V  +A+ID Y K G  ++A+KVF ++ + + +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +WT+++ G     Q  E  ++F +M  + ++ + +++  V+  C H+G++ +        
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ-------- 487

Query: 149 MCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                        AR++F +M +       +V +  M+     AG + +A E+   MP  
Sbjct: 488 -------------ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN 534

Query: 204 -NVWTWNAMI--DRYARNGP--EGAAMKLLNL 230
            N   W A++   R   + P  E AA K+L L
Sbjct: 535 PNSIVWGALLGASRLHNDEPMAELAAKKILEL 566



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 111/285 (38%), Gaps = 52/285 (18%)

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           SIL  C+   +    H+ +I  G     +   K    +VFW       V+ A   F ++ 
Sbjct: 39  SILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKL---FVFWCSRLGGHVSYAYKLFVKIP 95

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGR 363
             DVV W  MI  +S      +  RL+  MLK G  PD  TF  +L+      G +  G+
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGK 155

Query: 364 K------TFNLMSRAYGFKPRAEHYS---------------CLADIL---------RRAG 393
           K       F L S  Y      + YS               C  D+           R  
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215

Query: 394 QVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGD----VRMADYIGERLIELQPS 444
           + +E++ ++ +M   ER+      V L  +L AC    D     R+ +Y+ E   E    
Sbjct: 216 EYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKG 489
              A V   N +AA GE D   ++ + M+ R   V S++ I VKG
Sbjct: 273 LENALV---NAYAACGEMDIAVRIFRSMKAR--DVISWTSI-VKG 311


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 43/501 (8%)

Query: 8   GKVKEATK----LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G VKE T+    L    +  D      +I ++++   L  A  +F  MPE  R+ V+ ++
Sbjct: 120 GFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPE--RDSVSYNS 177

Query: 64  MIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYF-KARQVDEGRRLFDRMPLKLK 120
           MIDGYVK G V+ A ++FD +   + N+ +W S+I GY  +A  VD   +LFD MP K  
Sbjct: 178 MIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEK-- 235

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                                ++ISW +M  G  ++   + A+  F  MP +D+V W  M
Sbjct: 236 ---------------------DLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIM 274

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPN 239
           I  Y   G +  A  LF+ MP R+V  +N+M+  Y +N     A+++ N M  +S   P+
Sbjct: 275 IDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPD 334

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV--FWDWGFQLDVNSA 296
           ET+   +L++   +    L+ A+ + L   E++  L+ K     +  +   G    +  A
Sbjct: 335 ETSLVIVLSAIAQL--GRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCG---SIQHA 389

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FE +E+K +  W AMI   + HG G   F +  ++ +   KPD ITFVGVL+ CSH+
Sbjct: 390 MRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHS 449

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV++G   F LM R +  +PR +HY C+ DIL R+G +K A  ++  MP    D V+  
Sbjct: 450 GLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPND-VIWR 508

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
             L AC  H +    + + + LI     +  +YVL +N++A+ G W +  +VR  M E+ 
Sbjct: 509 TFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKN 568

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           ++K+   S IE+ G+ H  L 
Sbjct: 569 IEKIPGCSWIELDGRVHEFLC 589


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 244/497 (49%), Gaps = 46/497 (9%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMIDGYVKAG 72
           +L  E  +P+  +  S++       DL + +A+   + +S  N  +   +++++ Y K G
Sbjct: 181 QLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG 240

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
             + A KVF EI E +V SWT+LI+G F A     G R+F++M  +  N   +T      
Sbjct: 241 SANYACKVFGEIPERDVVSWTALITG-FVAEGYGSGLRIFNQMLAEGFNPNMYT------ 293

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ--MPNKDIVAWNAMITAYVDAGNM 190
                      IS    C+ L    + K      V+  +   D V   A++  Y     +
Sbjct: 294 ----------FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFL 342

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A  +FN + +R+++ W  ++  YA++G    A+K    M +    PNE T  S L+ C
Sbjct: 343 EDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 402

Query: 251 EGML---ENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
             +         H++AI+ G   +         +  KC C            V  A + F
Sbjct: 403 SRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGC------------VEDAEVVF 450

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           + L ++D VSW  +I  YS HG G +  + F  ML  GT PDE+TF+GVLS CSH GL+E
Sbjct: 451 DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIE 510

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G+K FN +S+ YG  P  EHY+C+ DIL RAG+  E    + +M     + ++   +LG
Sbjct: 511 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL-TSNVLIWETVLG 569

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKV 479
           AC++HG++   +    +L EL+P     Y+L +N+ AA+G WD+   VR  M  R VKK 
Sbjct: 570 ACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKE 629

Query: 480 ASFSQIEVKGKDHTLLA 496
              S +EV G+ H  L+
Sbjct: 630 PGCSWVEVNGQVHVFLS 646



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 31/377 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + +I+  +A +  Y+K   V+   + F  +   N+ S  +L+SG+      D+G R+  +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           + ++    N+ ++ +++  CA  G + + + I    + +G+                 N 
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGI-----------------NP 224

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D   WN+++  Y   G+   A ++F  +P+R+V +W A+I  +   G  G+ +++ N M 
Sbjct: 225 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQML 283

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
              F PN  T  SIL SC  + +  L    HA  ++   +    +       Y    +  
Sbjct: 284 AEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF-- 341

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   F RL  +D+ +WT ++  Y+  G G +  + F +M + G KP+E T    
Sbjct: 342 ---LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CS    ++ GR+  ++  +A G        S L D+  + G V++A  V   +    
Sbjct: 399 LSGCSRIATLDSGRQLHSMAIKA-GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVS-- 455

Query: 410 RDHVVLGALLGACRLHG 426
           RD V    ++     HG
Sbjct: 456 RDTVSWNTIICGYSQHG 472



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 25/269 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRNIVAESAMID 66
           G    A K+F E+ + D VS  ++IT F+            + + E    N+    +++ 
Sbjct: 240 GSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILR 299

Query: 67  GYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
                  VD  ++V  +I     +GN +  T+L+  Y K R +++   +F+R  L  +++
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR--LIKRDL 357

Query: 123 VSWTTVVLGCAHNG--------LI------AKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
            +WT +V G A +G         I       K    +  +  +G  R A     R+    
Sbjct: 358 FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSM 417

Query: 169 M----PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
                 + D+   +A++  Y   G +  A  +F+ +  R+  +WN +I  Y+++G  G A
Sbjct: 418 AIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKA 477

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGM 253
           +K    M     +P+E T   +L++C  M
Sbjct: 478 LKAFEAMLDEGTVPDEVTFIGVLSACSHM 506



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 111/246 (45%), Gaps = 11/246 (4%)

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W++++  YV   ++  A ++   MP ++V  WN  +       P   A++L  LM  +R 
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             N+    S++++   + +N      HA   + GFE +  ++      Y+         V
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQ-----SV 141

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +    F+ +  +++ S   ++  + +     Q  R+  ++L  G +P+  TF+ +L  C
Sbjct: 142 ENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTC 201

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +  G + +G+     + ++ G  P +  ++ L ++  + G    A +V  ++P  ERD V
Sbjct: 202 ASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIP--ERDVV 258

Query: 414 VLGALL 419
              AL+
Sbjct: 259 SWTALI 264



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 110/272 (40%), Gaps = 42/272 (15%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFR-AMPESQR-NIVAE 61
           G+ ++A K F +M     +P+  + AS ++   R   L     L   A+   Q  ++   
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVA 430

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKL 119
           SA++D Y K G V++A  VFD +   +  SW ++I GY +  Q  +  + F+ M     +
Sbjct: 431 SALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV 490

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + V++  V+  C+H GLI +              +     L++ Y +      I  +  
Sbjct: 491 PDEVTFIGVLSACSHMGLIEE-------------GKKHFNSLSKIYGI---TPTIEHYAC 534

Query: 180 MITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL---- 230
           M+     AG   +       M    NV  W  ++     +G     E AAMKL  L    
Sbjct: 535 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 594

Query: 231 ---------MFQSRFMPNETTCTSILTSCEGM 253
                    MF ++ M ++ T    L S  G+
Sbjct: 595 DSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 626


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 161/533 (30%), Positives = 270/533 (50%), Gaps = 69/533 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI---------- 58
           +V  A K+FDEM++ D +S  S+I  ++ N    K  ++F  M  S   I          
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304

Query: 59  -VAESAMI--------------------------DGYVKAGRVDEARKVFDEIYEGNVYS 91
             A+S +I                          D Y K G +D A+ VF E+ + +V S
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE-VISWTT 148
           +TS+I+GY +     E  +LF+ M  +    +V + T V+  CA   L+ + + V  W  
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW-- 422

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
               ++ N +              DI   NA++  Y   G+M +A  +F+ M  +++ +W
Sbjct: 423 ----IKENDL------------GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 466

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           N +I  Y++N     A+ L NL+ +  RF P+E T   +L +C  +    +    H   +
Sbjct: 467 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R G+  +  +       Y     G  L    A + F+ + +KD+VSWT MI  Y  HG G
Sbjct: 527 RNGYFSDRHVANSLVDMYA--KCGALL---LAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF +M ++G + DEI+FV +L  CSH+GLV++G + FN+M      +P  EHY+C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L R G + +A R +  MP    D  + GALL  CR+H DV++A+ + E++ EL+P 
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPP-DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           ++G YVL AN++A   +W++  ++RK++ +R ++K    S IE+KG+ +  +A
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 190/467 (40%), Gaps = 78/467 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +KEA+++FDE+     +    ++    ++ D   +  LF+ M  S             
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    +RN V  S ++  Y+K  RVD ARKVFDE+ E +V
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNS-LVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            SW S+I+GY      ++G  +F +M      + L  +VS   V  GCA + LI+     
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS---VFAGCADSRLIS----- 313

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                   L R   +   +  F    +++    N ++  Y   G++  A  +F  M  R+
Sbjct: 314 --------LGRAVHSIGVKACF----SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHA 261
           V ++ +MI  YAR G  G A+KL   M +    P+  T T++L  C     + E    H 
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
                 + +E  L +         D   +   +  A L F  +  KD++SW  +I  YS 
Sbjct: 422 ------WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 321 HGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
           + +  +   LF  +L+     PDE T   VL  C+     +KGR+    + R   F  R 
Sbjct: 476 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH 535

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              S L D+  + G +  A  +   +    +D V    ++    +HG
Sbjct: 536 VANS-LVDMYAKCGALLLAHMLFDDIAS--KDLVSWTVMIAGYGMHG 579



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 151/345 (43%), Gaps = 32/345 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G + EA +VFDE+       W  L++   K+        LF +M      + S+T 
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 128 VVLGCAHNGL--IAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
             +  + + L  +   E +    + +G  ERN++                   N+++  Y
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG------------------NSLVAFY 240

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           +    +  A ++F+ M +R+V +WN++I+ Y  NG     + +   M  S    +  T  
Sbjct: 241 LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300

Query: 245 SILTSC-EGMLENM--LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           S+   C +  L ++    H++ ++  F +E        C+ +   +    D++SA+  F 
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRF-----CNTLLDMYSKCGDLDSAKAVFR 355

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  + VVS+T+MI  Y+  G   +  +LF  M + G  PD  T   VL+ C+   L+++
Sbjct: 356 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415

Query: 362 GRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           G++    +     GF     +   L D+  + G ++EA  V S+M
Sbjct: 416 GKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEM 458



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 26/252 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           G   EA KLF+EM +    PD  +  +++    R   L + + +   + E+    +I   
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++D Y K G + EA  VF E+   ++ SW ++I GY K    +E   LF+ +  + + 
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495

Query: 121 --NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             +  +   V+  CA      K   I    M  G            YF      D    N
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNG------------YF-----SDRHVAN 538

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y   G +  A  LF+ +  +++ +W  MI  Y  +G    A+ L N M Q+    
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598

Query: 239 NETTCTSILTSC 250
           +E +  S+L +C
Sbjct: 599 DEISFVSLLYAC 610


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 171/595 (28%), Positives = 269/595 (45%), Gaps = 110/595 (18%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +  +G +  A ++FD   Q D VSC  MI        L  A  +F AMP+  RN V+ 
Sbjct: 210 TAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPD--RNAVSY 267

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S MI  Y+  G++ EA  +   + + +   WTS++S Y +   V+E RR+FDR   +  +
Sbjct: 268 SFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARR-DD 326

Query: 122 VVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
            VSW  ++   A  G +           + +V++WT +     +N   + A   +  +P 
Sbjct: 327 EVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPE 386

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +D+VAW A+I AY   G + ++  ++ LMP+RN  +  AMI  Y++NG    A K+L+ +
Sbjct: 387 RDLVAWTALIQAYGVNGKLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTL 446

Query: 232 FQSRFMPNETTCTSILTS------------------------CEGMLE-----NMLAHAL 262
                 P+++T TS++ +                        C  M+E      ML HA 
Sbjct: 447 PD----PDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAK 502

Query: 263 AIRLGFEQETSLTYK---------------------------CTCHYVFWDWGFQLDVNS 295
           A+    +Q+T +++                             + + +   +   +D+  
Sbjct: 503 AMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMIVAYAHNMDLAE 562

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHG-------------------------------HG 324
           AR  F  ++ KD V+WTAM+   + HG                               HG
Sbjct: 563 ARRIFYSMDEKDTVTWTAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHG 622

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
               R    M   G KPD ITF+G+L  CSH GLVE+G   F  M   +G  P  EHY  
Sbjct: 623 MAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCR 682

Query: 385 LADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
           + D+L RAGQ+  A  ++  MP  P   D    G+LLG+C+ H DV++     E L++  
Sbjct: 683 MVDVLGRAGQLGAARELLETMPFIP---DVGAWGSLLGSCKTHSDVKLGTRAAESLLQFD 739

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
             SSG YVL AN++++ G   +   VR +M+ R VKK    S I V G  H  +A
Sbjct: 740 DQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVA 794



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 212/472 (44%), Gaps = 86/472 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G   ++ +A  +F+E+ +P+  S   ++  +  N DL  A+A+F  +P    N+V+ ++
Sbjct: 57  YGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPS--HNVVSWNS 114

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I G+ + G +  A ++F  +   +  SW S+I+GY ++  +     +FDR P       
Sbjct: 115 LIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTP------- 167

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                     HN       VISW  + TG   N M   A+  F + P +D ++WNAM+TA
Sbjct: 168 ---------EHN-------VISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTA 211

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y  +G++  A E+F+  PQ+++                                    +C
Sbjct: 212 YAQSGDLDSAKEVFDRTPQQDI-----------------------------------VSC 236

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           T ++ +C   ++ +L HA+ I        +++Y      ++ D G    +  A     R+
Sbjct: 237 TLMIKACA--VQEILGHAVEIFAAMPDRNAVSYSFMIQ-IYIDQG---KIGEAENLSRRM 290

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             +D   WT+M+ AYS HG   +  R+F R   +  + DE+++  +LS  + AG +   R
Sbjct: 291 PQQDPTLWTSMLSAYSRHGLVEEARRIFDR---AARRDDEVSWNALLSAYAQAGHLHLAR 347

Query: 364 KTFNLMSRAYGFKPRAE--HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            TF  M       PR +   ++ L  +  + GQ++EA  +   +P  ERD V   AL+ A
Sbjct: 348 STFERM-------PRHDVVAWTALIAVSGQNGQLEEAEVLYDLIP--ERDLVAWTALIQA 398

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
             ++G +  +  +   + E    S  A ++      A  +  E  Q RK ++
Sbjct: 399 YGVNGKLTESKRVYALMPERNRVSHTAMII------AYSQNGEVVQARKMLD 444


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/533 (30%), Positives = 270/533 (50%), Gaps = 69/533 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI---------- 58
           +V  A K+FDEM++ D +S  S+I  ++ N    K  ++F  M  S   I          
Sbjct: 94  RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 153

Query: 59  -VAESAMI--------------------------DGYVKAGRVDEARKVFDEIYEGNVYS 91
             A+S +I                          D Y K G +D A+ VF E+ + +V S
Sbjct: 154 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 213

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE-VISWTT 148
           +TS+I+GY +     E  +LF+ M  +    +V + T V+  CA   L+ + + V  W  
Sbjct: 214 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW-- 271

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
               ++ N +              DI   NA++  Y   G+M +A  +F+ M  +++ +W
Sbjct: 272 ----IKENDL------------GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 315

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           N +I  Y++N     A+ L NL+ +  RF P+E T   +L +C  +    +    H   +
Sbjct: 316 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 375

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R G+  +  +       Y     G  L    A + F+ + +KD+VSWT MI  Y  HG G
Sbjct: 376 RNGYFSDRHVANSLVDMYA--KCGALL---LAHMLFDDIASKDLVSWTVMIAGYGMHGFG 430

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF +M ++G + DEI+FV +L  CSH+GLV++G + FN+M      +P  EHY+C
Sbjct: 431 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 490

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L R G + +A R +  MP    D  + GALL  CR+H DV++A+ + E++ EL+P 
Sbjct: 491 IVDMLARTGDLIKAYRFIENMPI-PPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 549

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           ++G YVL AN++A   +W++  ++RK++ +R ++K    S IE+KG+ +  +A
Sbjct: 550 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 602



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 166/382 (43%), Gaps = 40/382 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +RN V  S ++  Y+K  RVD ARKVFDE+ E +V SW S+I+GY      ++G  +F +
Sbjct: 77  ERNSVGNS-LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 135

Query: 115 M-----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           M      + L  +VS   V  GCA + LI+             L R   +   +  F   
Sbjct: 136 MLVSGIEIDLATIVS---VFAGCADSRLIS-------------LGRAVHSIGVKACF--- 176

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            +++    N ++  Y   G++  A  +F  M  R+V ++ +MI  YAR G  G A+KL  
Sbjct: 177 -SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 235

Query: 230 LMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            M +    P+  T T++L  C     + E    H       + +E  L +         D
Sbjct: 236 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE------WIKENDLGFDIFVSNALMD 289

Query: 287 WGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEI 344
              +   +  A L F  +  KD++SW  +I  YS + +  +   LF  +L+     PDE 
Sbjct: 290 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 349

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T   VL  C+     +KGR+    + R   F  R    S L D+  + G +  A  +   
Sbjct: 350 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANS-LVDMYAKCGALLLAHMLFDD 408

Query: 405 MPPHERDHVVLGALLGACRLHG 426
           +    +D V    ++    +HG
Sbjct: 409 IAS--KDLVSWTVMIAGYGMHG 428



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 26/252 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           G   EA KLF+EM +    PD  +  +++    R   L + + +   + E+    +I   
Sbjct: 225 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 284

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++D Y K G + EA  VF E+   ++ SW ++I GY K    +E   LF+ +  + + 
Sbjct: 285 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 344

Query: 121 --NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             +  +   V+  CA      K   I    M  G            YF      D    N
Sbjct: 345 SPDERTVACVLPACASLSAFDKGREIHGYIMRNG------------YF-----SDRHVAN 387

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y   G +  A  LF+ +  +++ +W  MI  Y  +G    A+ L N M Q+    
Sbjct: 388 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 447

Query: 239 NETTCTSILTSC 250
           +E +  S+L +C
Sbjct: 448 DEISFVSLLYAC 459



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 9/202 (4%)

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI---LTSCEGMLENMLAHALAI 264
           WN +++  A++G    ++ L   M  S    +  T + +    +S   +      H   +
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           + GF +  S+       Y+         V+SAR  F+ +  +DV+SW ++I  Y ++G  
Sbjct: 72  KSGFGERNSVGNSLVAFYLK-----NQRVDSARKVFDEMTERDVISWNSIINGYVSNGLA 126

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   +F +ML SG + D  T V V + C+ + L+  GR   ++  +A  F       + 
Sbjct: 127 EKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC-FSREDRFCNT 185

Query: 385 LADILRRAGQVKEAMRVVSKMP 406
           L D+  + G +  A  V  +M 
Sbjct: 186 LLDMYSKCGDLDSAKAVFREMS 207


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 230/442 (52%), Gaps = 24/442 (5%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N+   + +++ YV+   ++   KVFD+I + NV +WT LI+GY    Q  E   +F  
Sbjct: 139 EANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKE 198

Query: 115 MPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M       N V+    ++ CA       ++   W       ER  + K   + FV   N 
Sbjct: 199 MGRWGVEANEVTMVNALIACAR---CRDVDTGRWVH-----ER--VCKAGYDPFVFASNS 248

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +++   A++  Y   G +  A ELFN MP+RN+  WN MI+ Y +      A+ L   M 
Sbjct: 249 NVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYML 308

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            + F P++ T  S+L+ C       L    HA  ++    ++ +L       Y       
Sbjct: 309 ANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMY-----AK 363

Query: 290 QLDVNSARLAFER-LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFV 347
             ++ SA+  F   LE KDVV WT+MI A + HGHG +   LF  M + S   PD IT++
Sbjct: 364 NGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYI 423

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL  CSH GLVE+ +K FNLM+++YG  P  EHYSC+ D+L RAG  +EA +++  M  
Sbjct: 424 GVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSI 483

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
              +  + GALL  C++H ++ +A  +  RL EL+P  SG Y L +N++A  G+W+E  +
Sbjct: 484 RP-NIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEVNR 542

Query: 468 VRKKME-RRVKKVASFSQIEVK 488
            RK M+ +R+ K    S +E+K
Sbjct: 543 TRKMMKHKRIAKTIGHSSVEMK 564



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 21/264 (7%)

Query: 171 NKDIVAWNAMITAYVDAG---NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           N  I+  + +I   VD+        A+ LF  +   NV+ +N+MI  YA++     ++ L
Sbjct: 35  NTKIIPLSKLIDFCVDSHFDEYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHL 94

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENM---LAHALAIRLGFEQETSLTYKCTCHYVF 284
              M Q+ + P+  T   +L +C  + + +     H+  ++ GFE    +       YV 
Sbjct: 95  YKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVE 154

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  ++ S    F+++   +VV+WT +I  Y  +    +   +F  M + G + +E+
Sbjct: 155 CK-----NMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEV 209

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-------RAEHYSCLADILRRAGQVKE 397
           T V  L  C+    V+ GR     + +A G+ P            + + ++  + G +  
Sbjct: 210 TMVNALIACARCRDVDTGRWVHERVCKA-GYDPFVFASNSNVILATAIVEMYAKCGWLNV 268

Query: 398 AMRVVSKMPPHERDHVVLGALLGA 421
           A  + +KMP  ER+ V    ++ A
Sbjct: 269 ARELFNKMP--ERNIVAWNCMINA 290



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 23/208 (11%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  N++  +A+++ Y K G ++ AR++F+++ E N+ +W  +I+ Y +  + +E   LF 
Sbjct: 246 SNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFF 305

Query: 114 RMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
            M       +  ++ +V+  CA   ++A  E +    + + +                  
Sbjct: 306 YMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMA----------------- 348

Query: 172 KDIVAWNAMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           KDI    A++  Y   G +  A ++F N + +++V  W +MI+  A +G    A+ L  +
Sbjct: 349 KDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQI 408

Query: 231 MFQ-SRFMPNETTCTSILTSCE--GMLE 255
           M + S  +P+  T   +L +C   G++E
Sbjct: 409 MQEDSSLVPDHITYIGVLFACSHVGLVE 436



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 1/170 (0%)

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           M +  T  S+L  C+ +L+   +HAL +       T +           D  F    N A
Sbjct: 1   MIHPNTILSLLPKCKTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYA 60

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L F ++ + +V  + +MI  Y+   +      L+ +ML++G  PD  TF  VL  CS  
Sbjct: 61  NLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFI 120

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
                G+   + + ++ GF+      + L ++      ++  ++V  K+P
Sbjct: 121 YDQVSGKCVHSCILKS-GFEANVYVATGLLNMYVECKNMESGLKVFDKIP 169


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/504 (31%), Positives = 252/504 (50%), Gaps = 50/504 (9%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-----NIVAESAMIDGYVKAGRVDEAR 78
           DP    +    F    DL +A    RAM   +R     + +  S +I      G V E +
Sbjct: 19  DPSPLVNEFANFCHQWDLHRA---MRAMDAMERHGVFADAITYSELIKCCSARGAVQEGK 75

Query: 79  KVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           +V + I    YE  ++   +L++ Y K   ++E   LFD MP +  NVVSWTT++   ++
Sbjct: 76  RVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPER--NVVSWTTMISAYSN 133

Query: 135 NGLIAKLEVI----------------SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
                 L+ +                S    C GL    + +L           D+   +
Sbjct: 134 KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPN--LRQLHCGIIKTGLESDVFVRS 191

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y    ++  A  +F+ MP R++  WN++I  +A+N     A+ L   M ++ F+ 
Sbjct: 192 ALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLA 251

Query: 239 NETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTYK-----CTCHYVFWDWGFQLD 292
           ++ T TS+L +C G+    L   + +  L F+Q+  L        C C       G   D
Sbjct: 252 DQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKC-------GSLED 304

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            NSA   F R+  KDV+SW+ M+   + +G+  Q   LF  M +SG++P+ IT +GVL  
Sbjct: 305 ANSA---FSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFA 361

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGLVEKG   F  M + +G  P  EHY CL D+L RAG++ EA++++ +M   E D 
Sbjct: 362 CSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMEC-EPDS 420

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           V    LLGACR+H +V +A Y  +++IEL+P  +G Y+L +N++A    W++ A+VRK M
Sbjct: 421 VTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTM 480

Query: 473 ERR-VKKVASFSQIEVKGKDHTLL 495
             R ++K    S IEV  + H  +
Sbjct: 481 TNRGIRKTPGCSWIEVDKQIHVFI 504



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------------- 54
           +  A  +FDEM   D V   S+I  F +N D  +A  LF+ M  +               
Sbjct: 203 LDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRA 262

Query: 55  --------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                                ++++  +A+ID Y K G +++A   F  + E +V SW++
Sbjct: 263 CTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWST 322

Query: 95  LISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAK 140
           +++G  +     +   LF+ M       N ++   V+  C+H GL+ K
Sbjct: 323 MVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEK 370


>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
 gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
          Length = 672

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/523 (29%), Positives = 262/523 (50%), Gaps = 56/523 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++EA +LFDEM   +P S  +M+T F     + KA  +F AMP   ++  + SAM+ G
Sbjct: 146 GLMEEAQRLFDEMPHRNPASWNTMVTGFFAIGQMRKALNVFEAMP--VKDSASLSAMVSG 203

Query: 68  YVKAGRVDEARKVFDEIY-----EGNVYSWTSLISGYFKARQVDEGRRLFDRMP------ 116
           +++ G + EA ++  +       +  V ++ +LI+ Y +  +V + RRLF  +P      
Sbjct: 204 FIRNGWLHEADELLTKRLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFSMIPKTQSQH 263

Query: 117 ------LKLKNVVSWTTVVLG-------CAHNGLIAKL---EVISWTTMCTGLERNAMTK 160
                 +  +NVVSW ++++        C+   L  ++   ++++W TM  G  + +  +
Sbjct: 264 KGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDME 323

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A + F ++P  D V WN MI  +   G++  A   F+ MP+++  TWN MI  Y +N  
Sbjct: 324 EAEKLFGEVPAPDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNED 383

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-----QETSLT 275
               +KL   M +            +L +C  +          +RLG +     +++ L 
Sbjct: 384 YDCTIKLFQRMLEV-----------VLAACASLA--------MLRLGAQLHQLIEKSFLP 424

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARM 334
              T + +   +    ++ SA+  F ++   KD+VSW A+I  Y +HG+  +  RLF  M
Sbjct: 425 DTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNATEALRLFQEM 484

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
             +   P  ITF+ +LS C +AGLV +G+  F+ M   YG  PR EHY+ L +++ R GQ
Sbjct: 485 RSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVEHYAALVNLIGRHGQ 544

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +++A+ V+  MP    D  V GA LGAC    +  +A      L ++ P SS  YVL  N
Sbjct: 545 LEDALEVIKSMPIAP-DRAVWGAFLGACTAKKNEVLAAVAANALSKIDPESSAPYVLMHN 603

Query: 455 VHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +HA  G W   + VR+ MER  + K   +S I++  K H  ++
Sbjct: 604 LHAHEGRWGSASVVREDMERLGIHKHPGYSWIDLHDKVHVFIS 646



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 166/377 (44%), Gaps = 38/377 (10%)

Query: 50  AMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
           AM ++   +   +  + G ++ GR   AR++FD +   +V +W S ++   + R V   R
Sbjct: 28  AMDQADSLVRQHNRSLMGLLRRGRFSAARRLFDALPARSVVTWNSFLAALSRRRDVRAAR 87

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHN-------------GLIAKLEVISWTTMCTGLERN 156
             FD MP++  +++SW T++   A +               + + + +SW+T+     R 
Sbjct: 88  SFFDAMPMR--DIISWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRR 145

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
            + + A+  F +MP+++  +WN M+T +   G M +A  +F  MP ++  + +AM+  + 
Sbjct: 146 GLMEEAQRLFDEMPHRNPASWNTMVTGFFAIGQMRKALNVFEAMPVKDSASLSAMVSGFI 205

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---------LENMLAHALAIRLG 267
           RNG    A +LL    ++  M       + L +  G          L +M+    +   G
Sbjct: 206 RNGWLHEADELLTKRLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFSMIPKTQSQHKG 265

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            ++        + + +   +    DV SAR  F+ +  KD+V+W  MI  Y+      + 
Sbjct: 266 HKRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDMEEA 325

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA---------YGFKPR 378
            +LF  +      PD +T+  ++   +  G VE  R  F+ M             G++ +
Sbjct: 326 EKLFGEV----PAPDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYE-Q 380

Query: 379 AEHYSCLADILRRAGQV 395
            E Y C   + +R  +V
Sbjct: 381 NEDYDCTIKLFQRMLEV 397



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 37/274 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQP--------------DPVSCASMITVFLRNHDLPKAEALFR 49
           +G TG+V +A +LF  + +               + VS  SM+  ++R  D+  A ALF 
Sbjct: 240 YGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFD 299

Query: 50  AMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
            MP   +++V  + MI GY +A  ++EA K+F E+   +  +W  +I G+ +   V+  R
Sbjct: 300 EMPF--KDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGFTQKGDVEHAR 357

Query: 110 RLFDRMPLKLKNVVSWTTVVLG--------CAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
             FDRMP   ++ ++W T++ G        C        LEV+     C  L   AM +L
Sbjct: 358 GFFDRMP--EQSTITWNTMISGYEQNEDYDCTIKLFQRMLEVV--LAACASL---AMLRL 410

Query: 162 AREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYA 216
             +   Q+  K    D    NA++T Y   G +  A  +F+ M  Q+++ +WNA+I  Y 
Sbjct: 411 GAQLH-QLIEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYE 469

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +G    A++L   M  ++ MP   T  S+L++C
Sbjct: 470 HHGNATEALRLFQEMRSAKVMPTHITFISLLSAC 503


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 265/533 (49%), Gaps = 50/533 (9%)

Query: 22  QPD--PVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           +PD   ++C    ++V   +  L K    F        +I   +A+I  Y +      AR
Sbjct: 135 KPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIAR 194

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLK-NVVSWTTVVLGCAH- 134
            +FD +++ ++ SW S+I+GY +    ++ + L+ +M     L+ N V+  +V+  CA  
Sbjct: 195 ILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQT 254

Query: 135 NGLIAKLEV------------ISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           N L+  ++V            +S      GL  +      ARE F +M NKD V + +++
Sbjct: 255 NDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIV 314

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y+  G + +A +LF  M    + TWNA+I    +N      ++L+  M +  F PN  
Sbjct: 315 SGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAV 374

Query: 242 TCTSILT--SCEGMLENMLA-HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T +SIL   SC   L+   A HA AIR G+     +       Y     GF   +  A+ 
Sbjct: 375 TLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYA--KLGF---LRGAQW 429

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F++ + + ++ WTA+I AYS HG      RLF  ML +GT+PD +TF  VL+ C+H+G+
Sbjct: 430 VFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGM 489

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V +  K F+ M   YGF+P  EHY+C+  +L RAG + EA   + KMP  E +  V GAL
Sbjct: 490 VNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPI-EPNAKVWGAL 548

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVK 477
           L    + GDV +  ++ + L  ++P ++G YV+ AN+++  G W+E   +R+KM++  +K
Sbjct: 549 LNGVSVSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLK 608

Query: 478 KVASFSQIEVKGKDHT--------------------LLAPMREMGYVVLKEVD 510
           K+   S IE  G   +                    LL  MRE GY +  E+D
Sbjct: 609 KIPGTSWIETSGGLRSFIARDVSSERSEEIYGMLEGLLGLMREEGYTLQDELD 661



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 137/345 (39%), Gaps = 46/345 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I  Y K+  + EA KVFD+I + N++SW +++ GY           L   +      
Sbjct: 73  SKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSL 132

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            +      + C        L+ +S     + L +     + R  F    + DI   NA+I
Sbjct: 133 TLKPDNFTITCV-------LKALSVLFPDSILAKEVQCFVLRHGF----DSDIFVVNALI 181

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNE 240
           T Y        A  LF+ M  R++ +WN+MI  Y++ G      +L   M  S  + PN 
Sbjct: 182 TYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNG 241

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQ 290
            T  S+L +C     ++  M  H   I    E + S       L  KC            
Sbjct: 242 VTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCG----------- 290

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ AR  F  +  KD V++ +++  Y  HG   +   LF  M             G++
Sbjct: 291 -SLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLV 349

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRA-------EHYSCLADI 388
            +  + G++E  ++      + +GF+P A         +SC +++
Sbjct: 350 QNNCNEGILELVQEM-----QEFGFRPNAVTLSSILPTFSCFSNL 389



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 16/260 (6%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE---GAAMKLLNLMFQSRF 236
           +IT Y  + ++ +A ++F+ +  +N+++WNAM+  Y+ +         +  L   +    
Sbjct: 75  LITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTL 134

Query: 237 MPNETTCTSILTSCEGML-ENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            P+  T T +L +   +  +++LA       +R GF+ +  +      +Y   D     +
Sbjct: 135 KPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCD-----E 189

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLS 351
              AR+ F+R+  +D+VSW +MI  YS  G       L+ +ML S G +P+ +T V VL 
Sbjct: 190 YGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQ 249

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+    +  G K    +         + H S L  +  + G +  A  + ++M    +D
Sbjct: 250 ACAQTNDLVFGMKVHQFIIERKVEMDVSAHNS-LIGLYAKCGSLDYARELFNEMS--NKD 306

Query: 412 HVVLGALLGACRLHGDVRMA 431
            V  G+++     HG V  A
Sbjct: 307 EVTYGSIVSGYMTHGFVDKA 326



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 115/294 (39%), Gaps = 58/294 (19%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------------ 54
           A  LFD M   D VS  SMI  + +       + L+R M +S                  
Sbjct: 193 ARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACA 252

Query: 55  --------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                               + ++ A +++I  Y K G +D AR++F+E+   +  ++ S
Sbjct: 253 QTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGS 312

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           ++SGY     VD+   LF  M  K   + +W  V+ G   N     +  +       G  
Sbjct: 313 IVSGYMTHGFVDKAMDLFREM--KNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFR 370

Query: 155 RNAMT-----------------KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASEL 196
            NA+T                 K    Y ++     +I    ++I AY   G +  A  +
Sbjct: 371 PNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWV 430

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           F+    R++  W A+I  Y+ +G   AA++L   M  +   P+  T T++L +C
Sbjct: 431 FDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAAC 484



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 32/258 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LF+EMS  D V+  S+++ ++ +  + KA  LFR M   +  +   +A+I G
Sbjct: 290 GSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPR--LSTWNAVISG 347

Query: 68  YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
            V+    +   ++  E+ E     N  + +S++  +     +  G+ +       ++N  
Sbjct: 348 LVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIH---AYAIRN-- 402

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                  G AHN  +A       T++     +    + A+  F Q  ++ ++ W A+I+A
Sbjct: 403 -------GYAHNIYVA-------TSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISA 448

Query: 184 YVDAGNMAQASELFNLM----PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMP 238
           Y   G+   A  LF  M     Q +  T+ A++   A +G    A K+ + MF +  F P
Sbjct: 449 YSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQP 508

Query: 239 --NETTCTSILTSCEGML 254
                 C   + S  GML
Sbjct: 509 CVEHYACMVGVLSRAGML 526


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 261/532 (49%), Gaps = 67/532 (12%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMIT-------------VFLR----------------- 37
            G V+ A  LFDE+S+PD VS  SMI              +F++                 
Sbjct: 519  GGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVL 578

Query: 38   -------NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                   N  L +A   F         +V  + ++D Y K G ++ A +VF ++ +  + 
Sbjct: 579  VAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIV 638

Query: 91   SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
            SWTS I+ Y +     +   LFD M  K    ++ + T++V  CA +  + K   +    
Sbjct: 639  SWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV 698

Query: 149  MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
            +  G+  N                 +   NA+I  Y   G++ +A  +F+ +P +++ +W
Sbjct: 699  IKNGMGSN-----------------LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSW 741

Query: 209  NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR 265
            N MI  Y++N     A++L  L  Q +F P++ T   +L +C G+    +    H   +R
Sbjct: 742  NTMIGGYSQNSLPNEALELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILR 800

Query: 266  LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             G+  +  L   C    ++   G  +    A+L F+ +  KD++SWT MI  Y  HG G 
Sbjct: 801  RGYFSD--LHVACALVDMYAKCGLLV---LAQLLFDMIPKKDLISWTVMIAGYGMHGFGN 855

Query: 326  QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
            +    F  M  +G +PDE +F  +L+ CSH+GL+ +G K FN M    G +P+ EHY+C+
Sbjct: 856  EAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACV 915

Query: 386  ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
             D+L R G + +A + +  MP  + D  + G LL  CR+H DV++A+ + E + EL+P +
Sbjct: 916  VDLLARMGNLSKAYKFIESMPI-KPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDN 974

Query: 446  SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            +  YV+ ANV+A   +W+E  ++RK+M++R  K+    S IEV GK +  +A
Sbjct: 975  TRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 1026



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 210/499 (42%), Gaps = 49/499 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           G + +  K+FD++          +++ + +  +  ++ +LF+ M +     N    + ++
Sbjct: 418 GDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVL 477

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
             +   G+V E ++V   +    +  N     SLI+ YFK   V+    LFD   L   +
Sbjct: 478 KCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE--LSEPD 535

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN---------- 171
           VVSW +++ GC  NG       I    +  G+E +  T ++    V   N          
Sbjct: 536 VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVS--VLVAWANIGNLSLGRAL 593

Query: 172 ----------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                     +++V  N ++  Y   GN+  A+E+F  M    + +W + I  Y R G  
Sbjct: 594 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLY 653

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKC 278
             A+ L + M      P+  T TSI+ +C     + +    H+  I+ G      +T   
Sbjct: 654 SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 713

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          V  ARL F ++  KD+VSW  MI  YS +    +   LF  M K  
Sbjct: 714 INMYAKCG-----SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ- 767

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC-LADILRRAGQVKE 397
            KPD+IT   VL  C+    ++KGR+    + R   F     H +C L D+  + G +  
Sbjct: 768 FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAKCGLLVL 825

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLH--GDVRMADYIGERLIELQPS-SSGAYVLSAN 454
           A  +   +P  ++D +    ++    +H  G+  ++ +   R+  ++P  SS + +L+A 
Sbjct: 826 AQLLFDMIP--KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNAC 883

Query: 455 VHAA--RGEWDEFAQVRKK 471
            H+      W  F  +R +
Sbjct: 884 SHSGLLNEGWKFFNSMRNE 902



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  YV+ G++ Q  ++F+ +    V+ WN ++  YA+ G    ++ L   M +   + N
Sbjct: 410 LVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGN 469

Query: 240 ETTCTSILTSCEGML----ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             T T +L  C   L    E    H   ++LGF   T++       Y  + +G    V S
Sbjct: 470 CYTFTCVL-KCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAY--FKFG---GVES 523

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F+ L   DVVSW +MI     +G       +F +ML  G + D  T V VL   ++
Sbjct: 524 AHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWAN 583

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            G +  GR       +A  F       + L D+  + G +  A  V  KM
Sbjct: 584 IGNLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632


>gi|302753930|ref|XP_002960389.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
 gi|300171328|gb|EFJ37928.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
          Length = 577

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/514 (31%), Positives = 251/514 (48%), Gaps = 55/514 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK + A  +F  M + D V+  +MIT + +N +L  A+A+F  MP   RN V+ +A+IDG
Sbjct: 72  GKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMPA--RNFVSWNAIIDG 129

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             +      A+KVFD + +  V SWT++++ Y ++ +++E + L  +MP    N+VSW  
Sbjct: 130 CAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKMPAL--NIVSWNV 187

Query: 128 VVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++   A N L+ +           + +SW  + T   + +   LAR  F +MP +D+V+W
Sbjct: 188 MIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSW 247

Query: 178 NAMITAYVDAG--NMAQASELFNLMPQRNVWTWNAMIDRYA------------------- 216
             MI +Y   G  +M QA E+F+  PQRNV +WN MI  Y+                   
Sbjct: 248 ATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLFERMPMMA 307

Query: 217 ---------------RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
                           NG +  A++L   M +    P+  + TS L +C G+     A  
Sbjct: 308 EHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLASLGAARD 367

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           +  RL    +  L      H    D +G    +  A L F+ L + DVV+W A+    S 
Sbjct: 368 IHWRLC---KAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAAGLSR 424

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
            G    V  L   +   G +PD ITF+ +L+   HAGLV+ GR+ F  M   Y  +P  E
Sbjct: 425 QGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYRIEPGIE 484

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY CL D+L RA +++EA+ VVS M PH    V    +L AC    ++ +A    E L+ 
Sbjct: 485 HYHCLVDMLGRANRLEEAVAVVSAM-PHRPSSVTWTTVLSACVKWKNLGVASVAFESLLG 543

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
           + P    AYVL ANV+ + G  +E A++ + + R
Sbjct: 544 IDPDGPAAYVLMANVYGSAGMAEEEAKLLEHVRR 577



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 185/444 (41%), Gaps = 58/444 (13%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD-------- 82
           M+TV+  N     A+ LF  +P   R+ VA S +I  +VK G ++ AR+VFD        
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIP-GGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVV 59

Query: 83  -----------------------EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
                                   + E ++ +W ++I+ Y +   +   + +F RMP   
Sbjct: 60  TSTAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMP--A 117

Query: 120 KNVVSWTTVVLGCAHN---GLIAKL-------EVISWTTMCTGLERNAMTKLAREYFVQM 169
           +N VSW  ++ GCA      L  K+       EV+SWT M     ++   + A+    +M
Sbjct: 118 RNFVSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKM 177

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P  +IV+WN MI A+ D   + +A E F+  P+ +  +WNA+I  YA+      A    +
Sbjct: 178 PALNIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFD 237

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            M Q   +   T   S   + EG      A  +  R       S     T +        
Sbjct: 238 RMPQRDVVSWATMIQSY--AQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSA------ 289

Query: 290 QLDVNSARLAFERLE---AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
              +  +R  FER+      D+VSW A+I  + ++G   +  +LF  M + G  PD  ++
Sbjct: 290 SGRIKQSRGLFERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASY 349

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              L+ C+    +   R     + +A G +  A  ++ L D   ++G++ +A  V   + 
Sbjct: 350 TSALAACAGLASLGAARDIHWRLCKA-GLETDAFVHNALVDFYGKSGRMADAELVFQSLA 408

Query: 407 PHERDHVVLGALLGACRLHGDVRM 430
               D V   AL       G  R+
Sbjct: 409 --SVDVVTWNALAAGLSRQGSYRL 430


>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 223/445 (50%), Gaps = 63/445 (14%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  +S+++  Y ++G       VF E+   N+ SWT++I+GY + R   EG  +F  M 
Sbjct: 162 DVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREM- 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV 175
                      V  G   N +     ++S    C GLE   + KL   Y +++  + D+ 
Sbjct: 221 -----------VGSGTQPNAVT----LVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVS 265

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA+I  Y   GN+  A  LF+ M  +N+ +WNAMI  Y +N     A+KL   M   +
Sbjct: 266 LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK 325

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
              +  T  S++++                                Y+            
Sbjct: 326 VDFDYITMVSVISA--------------------------------YL------------ 341

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           AR  FERL  + VVSWT+MI A ++HGHG    +LF+RM   G KP+  TF  V + C H
Sbjct: 342 AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRH 401

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           +GLVE+GRK F  M R Y   P  EH +C+ D+L RAG + EA   + KMP  E D  V 
Sbjct: 402 SGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV-EPDVSVW 460

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           GALLG+CR+H ++ +A+ + E+L  L P +   YVL +N++A  G W++ A++RK M ER
Sbjct: 461 GALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEER 520

Query: 475 RVKKVASFSQIEVKGKDHTLLAPMR 499
            +KK+   S +EV  + HT L+  R
Sbjct: 521 ELKKIPGHSLVEVNRRFHTFLSGSR 545



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +ITA   A  M  A ++F+ MP+R+V+ WN +I  YA  GP   A+ L + M  +   P+
Sbjct: 68  IITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127

Query: 240 ETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T   ++ SC     + E    H   ++ GF+ +  +       Y     G  L +   
Sbjct: 128 NYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYS--QSGETLGM--- 182

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L F  +  +++VSWTA+I  Y  + +  +   +F  M+ SGT+P+ +T V VL  C+  
Sbjct: 183 ELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGL 242

Query: 357 GLVEKGRKTFNLMSRAYGFK----PRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             +  G+     +   YG K    P     + L  +  + G V+ A  +   M
Sbjct: 243 EFLNLGK-----LIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGM 290



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 28/214 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAE 61
           +G  G V+ A  LFD M   + VS  +MI  + +N+    A  LFR M   + +   +  
Sbjct: 274 YGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITM 333

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
            ++I  Y+       AR+VF+ +   +V SWTS+I         ++  +LF RM  +   
Sbjct: 334 VSVISAYL-------AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVK 386

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++  V   C H+GL+ +              R     + R+Y + MP  +  A   
Sbjct: 387 PNSFTFAAVFTACRHSGLVEE-------------GRKHFESMMRDYSI-MPGVEHCA--C 430

Query: 180 MITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
           M+     AG++ +A E  + MP + +V  W A++
Sbjct: 431 MVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 464


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 234/439 (53%), Gaps = 41/439 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + ++D Y K G++  AR VFDE+ + +  SWT+LI GY +  ++D   +LFD+MP
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMP 171

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            ++K+VV +  ++ G   +G +                       AR  F +M +K ++ 
Sbjct: 172 -QVKDVVIYNAMMDGFVKSGDMTS---------------------ARRLFDEMTHKTVIT 209

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W  MI  Y ++ ++  A +LF+ MP+RN+ +WN MI  Y +N     A++L   M  +  
Sbjct: 210 WTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTS 269

Query: 237 M-PNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKC-TCHYVFWDWGF 289
           + P++ T  S+L +        ++   A+ LG     F Q  +L  K   C  +   +  
Sbjct: 270 LDPDDVTILSVLPA--------ISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSK 321

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             ++  A+  F+ +  K V SW AMI  Y+ +G+      LF  M K   KPDEIT + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKE-EKPDEITMLAV 380

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S C+H GLVE+GRK F +M R +G   + EHY C+ D+L RAG +K+A  +++ MP  +
Sbjct: 381 ISACNHGGLVEEGRKWFQMM-RKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMP-FK 438

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + ++L + L AC  + D+  A+ I ++ +EL+P + G YVL  N++AA   WD+F  V+
Sbjct: 439 PNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVK 498

Query: 470 KKMER-RVKKVASFSQIEV 487
             M +   KK    S IE+
Sbjct: 499 NMMRKNEAKKEVGCSLIEI 517



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 25/269 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+  A  +FDEM Q   VS  ++I  ++R  +L  A  LF  MP+  +++V  +AM+DG
Sbjct: 127 GKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQV-KDVVIYNAMMDG 185

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           +VK+G +  AR++FDE+    V +WT++I GY  +  +D  R+LFD MP   +N+VSW T
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMP--ERNLVSWNT 243

Query: 128 VVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTKLAR----------------EYFVQMP 170
           ++ G C +      + +       T L+ + +T L+                   FVQ  
Sbjct: 244 MIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303

Query: 171 N--KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           N  K +    A++  Y   G + +A  +F+ MP++ V +WNAMI  YA NG   AA+ L 
Sbjct: 304 NLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLF 363

Query: 229 NLMFQSRFMPNETTCTSILTSCE--GMLE 255
             M +    P+E T  +++++C   G++E
Sbjct: 364 LTMAKEE-KPDEITMLAVISACNHGGLVE 391



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 61/252 (24%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A +LFDEM+    ++  +MI  +  ++D+  A  LF AMPE  RN+V+ + MI 
Sbjct: 189 SGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPE--RNLVSWNTMIG 246

Query: 67  GYVKAGRVDEARKVFDEI----------------------------------------YE 86
           GY +  +  EA ++F E+                                         +
Sbjct: 247 GYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLD 306

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------- 136
             V   T+++  Y K  ++++ +R+FD MP   K V SW  ++ G A NG          
Sbjct: 307 KKVKVCTAILDMYSKCGEIEKAKRIFDEMP--EKQVASWNAMIHGYALNGNAHAALDLFL 364

Query: 137 LIAKLEVISWTTM---CTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGN 189
            +AK E     TM    +      + +  R++F  M     N  I  +  M+     AGN
Sbjct: 365 TMAKEEKPDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDLLGRAGN 424

Query: 190 MAQASELFNLMP 201
           + QA  L   MP
Sbjct: 425 LKQAEHLITNMP 436


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 163/531 (30%), Positives = 270/531 (50%), Gaps = 56/531 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------PESQRNI 58
           G++ EA K+F+E  +PD V   SM+T + +N+D  +A ALF  M         P +  ++
Sbjct: 153 GQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSV 212

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V+  A +   VKAG       +  E ++G++    SL++ Y K         LF +MP  
Sbjct: 213 VSACAQLLN-VKAGSCVHGLVIRRE-FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-- 268

Query: 119 LKNVVSWTTVVLGCAHN-----------GLIAKLEVISWTTMCTGLERNAMT-------K 160
            K+V+SW+T++   A+N            +I K    +  T+ + L+  A++       K
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK 328

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           + +    +    D     A+I  Y+      +A +LF  +P+++V +W A++  YA+NG 
Sbjct: 329 IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGM 388

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQET----- 272
              +M +   M      P+      IL +    G+ +  L  H   +R GF         
Sbjct: 389 AYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGAS 448

Query: 273 --SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              L  KC              +  A   F+ +  +DVV W++MI AY  HG G +   +
Sbjct: 449 LIELYSKCG------------SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEI 496

Query: 331 FARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           F +M+K+ T +P+ +TF+ +LS CSHAGLVE+G K F+ M   Y  +P +EH+  + D+L
Sbjct: 497 FDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLL 556

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            R GQ+ +AM ++++MP     H V GALLGACR+H ++ M +   + L  L PS +G Y
Sbjct: 557 GRIGQLGKAMDIINRMPIPAGPH-VWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYY 615

Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           +L +N++A  G+WD  A++R ++ ER +KK+   S +EV+G  H+ LA  R
Sbjct: 616 ILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDR 666



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 233/467 (49%), Gaps = 49/467 (10%)

Query: 68   YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LK-NVVSW 125
            YV   R+D A  VF++I     + W  +I G+    +      L+ +M  K LK +  ++
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 126  TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
               +  CA    + + +VI    +C G                  + D+    A++  Y 
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQHLVCCGC-----------------SNDLFVDAALVDMYA 864

Query: 186  DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
              G++  A  +F+ M  R++ +W +MI  YA NG     +   +LM  S  +PN  +  S
Sbjct: 865  KCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILS 924

Query: 246  ILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
            +L +C     + +    H+  I+ GFE +  +    T     +     LD+  AR  F+ 
Sbjct: 925  VLLACGNLGALRKGEWFHSYVIQTGFEFDILVA---TAIMDMYSKCGSLDL--ARCLFDE 979

Query: 303  LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
               KD+V W+AMI +Y  HGHG +   LF +M+K+G +P  +TF  VLS CSH+GL+E+G
Sbjct: 980  TAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG 1039

Query: 363  RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
            +  F LM+  +    +  +Y+C+ D+L RAGQ+ EA+ ++  MP  E D  + G+LLGAC
Sbjct: 1040 KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV-EPDASIWGSLLGAC 1098

Query: 423  RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVAS 481
            R+H ++ +A+ I + L  L P  +G +VL +N++AA+  W+E  +VRK M RR   K+  
Sbjct: 1099 RIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQG 1158

Query: 482  FSQIEVKGKDHT--------------------LLAPMREMGYVVLKE 508
            FS +E   + H                     L APM+ +GYV L +
Sbjct: 1159 FSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTD 1205



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 194/441 (43%), Gaps = 79/441 (17%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++   SA+++ Y K G++ EA KVF+E    +   WTS+++GY +    +E   LF
Sbjct: 134 EIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 113 DRM---------PLKLKNVVSWTTVVL-----GCAHNGLIAKLEVISWTTMCTGL----E 154
            +M         P+ L +VVS    +L      C H GL+ + E      +   L     
Sbjct: 194 SQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVH-GLVIRREFDGDLPLVNSLLNLYA 252

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           +    K+A   F +MP KD+++W+ MI                                 
Sbjct: 253 KTGCEKIAANLFSKMPEKDVISWSTMIAC------------------------------- 281

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE 271
           YA N     A+ L + M + RF PN  T  S L +C     + E    H +A+  GFE +
Sbjct: 282 YANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELD 341

Query: 272 TSLT-------YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
            S++        KC+C             + A   F+RL  KDVVSW A++  Y+ +G  
Sbjct: 342 FSVSTALIDMYMKCSCP------------DEAVDLFQRLPKKDVVSWVALLSGYAQNGMA 389

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
           ++   +F  ML  G +PD +  V +L+  S  G+ ++       + R+ GF       + 
Sbjct: 390 YKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGAS 448

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE---L 441
           L ++  + G + +A+++   M    RD V+  +++ A  +HG    A  I +++++   +
Sbjct: 449 LIELYSKCGSLGDAVKLFKGMIV--RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTV 506

Query: 442 QPSS-SGAYVLSANVHAARGE 461
           +P++ +   +LSA  HA   E
Sbjct: 507 RPNNVTFLSILSACSHAGLVE 527



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 150/361 (41%), Gaps = 35/361 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K   +  ARKVFDE    NV+ W S +  Y + +Q +E  RLF  M           T
Sbjct: 46  YAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFT 105

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYV 185
           + +                   C GL    + K+   +  +      D+   +A++  Y 
Sbjct: 106 IPIA---------------LKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYS 150

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCT 244
             G M +A ++F    + +   W +M+  Y +N  PE A      ++     + +  T  
Sbjct: 151 KCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLV 210

Query: 245 SILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-- 299
           S++++C  +L        H L IR  F+ +  L       Y              ++A  
Sbjct: 211 SVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYA--------KTGCEKIAAN 262

Query: 300 -FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++  KDV+SW+ MI  Y+N+    +   LF  M++   +P+ +T V  L  C+ +  
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           +E+G+K   + +   GF+      + L D+  +     EA+ +  ++P  ++D V   AL
Sbjct: 323 LEEGKKIHKI-AVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP--KKDVVSWVAL 379

Query: 419 L 419
           L
Sbjct: 380 L 380



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 27/262 (10%)

Query: 4    FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRN 57
            F   G+   + +L+ +M +    PD  +    +       DL + + + + +       +
Sbjct: 793  FATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSND 852

Query: 58   IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            +  ++A++D Y K G ++ AR VFD++   ++ SWTS+ISGY       E    FD M  
Sbjct: 853  LFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 118  K--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
               + N VS  +V+L C + G + K E      + TG E                  DI+
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF-----------------DIL 955

Query: 176  AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
               A++  Y   G++  A  LF+    +++  W+AMI  Y  +G    A+ L + M ++ 
Sbjct: 956  VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 1015

Query: 236  FMPNETTCTSILTSC--EGMLE 255
              P+  T T +L++C   G+LE
Sbjct: 1016 VRPSHVTFTCVLSACSHSGLLE 1037


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 227/466 (48%), Gaps = 35/466 (7%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           +C +M    L    L + EA+ R       ++   + +I  Y + G    AR VFD   E
Sbjct: 119 ACGAMCG--LLEGGLVQGEAVKRGFGG---DVFVVNGLISMYCRCGETGWARAVFDGFSE 173

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++ SW S++ GY    +++  + +FD MP +                       +V+SW
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPER-----------------------DVVSW 210

Query: 147 TTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           + M  G  ++      AR +F  MP +D+V+WN+MI  Y   G M  A E+FB M Q+NV
Sbjct: 211 SIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNV 270

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
            +W+ MID YA +     A+ L   M      P+  +    +++C  +    L     I 
Sbjct: 271 ISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQL--GALDQGRWIH 328

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           L + +   +           D   +    + AR  F  +  ++VVSW  MI+    +G G
Sbjct: 329 L-YMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFG 387

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +    F +M       D++ F+GVL  CSHA LV +G   FN M   Y  +P+ EHY C
Sbjct: 388 KEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGC 447

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           L D+L RAGQ+ +   ++  M P + +  + G+LL ACR+H +V +A+ + ERL EL+  
Sbjct: 448 LVDLLGRAGQLDQIQNIIQSM-PMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKAD 506

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
            SG YVL +N++A  G W+   ++RK M ER++KK    S IEV G
Sbjct: 507 DSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDG 552


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 246/509 (48%), Gaps = 51/509 (10%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPE---SQRNIVA 60
           G+ +EA ++F  M      P+  + AS+++      DL   E++   + +      N V 
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC 469

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++  Y+K G V +  +VF+     ++ SW +L+SG+      D G R+F++M  +  
Sbjct: 470 -NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF 528

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ--MPNKDIVAWN 178
           N   +T                 IS    C+ L    + K      V+  +   D V   
Sbjct: 529 NPNMYT----------------FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG-T 571

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y     +  A  +FN + +R+++ W  ++  YA++G    A+K    M +    P
Sbjct: 572 ALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKP 631

Query: 239 NETTCTSILTSCEGML---ENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWG 288
           NE T  S L+ C  +         H++AI+ G   +         +  KC C        
Sbjct: 632 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGC-------- 683

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V  A + F+ L ++D VSW  +I  YS HG G +  + F  ML  GT PDE+TF+G
Sbjct: 684 ----VEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIG 739

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS CSH GL+E+G+K FN +S+ YG  P  EHY+C+ DIL RAG+  E    + +M   
Sbjct: 740 VLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL- 798

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
             + ++   +LGAC++HG++   +    +L EL+P     Y+L +N+ AA+G WD+   V
Sbjct: 799 TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNV 858

Query: 469 RKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           R  M  R VKK    S +EV G+ H  L+
Sbjct: 859 RALMSTRGVKKEPGCSWVEVNGQVHVFLS 887



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 159/363 (43%), Gaps = 30/363 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +++++ Y K G  + A KVF EI E +V SWT+LI+G+           LF  M  +   
Sbjct: 167 NSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVE 226

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++ T +  C               +MC  LE     ++  E        D+   +A
Sbjct: 227 ANEFTYATALKAC---------------SMCLDLEFG--KQVHAEAIKVGDFSDLFVGSA 269

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G M  A  +F  MP++N  +WNA+++ +A+ G     + L   M  S    +
Sbjct: 270 LVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFS 329

Query: 240 ETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           + T +++L  C     +    + H+LAIR+G E +  ++  C    ++   G   D   A
Sbjct: 330 KFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS--CCLVDMYSKCGLAGD---A 384

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F R+E  DVVSW+A+I      G   +   +F RM  SG  P++ T   ++S  +  
Sbjct: 385 LKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDL 444

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G +  G      + + YGF+      + L  +  + G V++  RV        RD +   
Sbjct: 445 GDLYYGESIHACVCK-YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT--NRDLISWN 501

Query: 417 ALL 419
           ALL
Sbjct: 502 ALL 504



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 25/278 (8%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           N D   WN+++  Y   G+   A ++F  +P+R+V +W A+I  +   G    A+ L   
Sbjct: 160 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219

Query: 231 MFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQE-------TSLTYKCTC 280
           M +     NE T  + L +C   L+       HA AI++G   +         L  KC  
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG- 278

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                      ++  A   F  +  ++ VSW A++  ++  G   +V  LF RM  S   
Sbjct: 279 -----------EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEIN 327

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
             + T   VL  C+++G +  G+   +L  R  G +       CL D+  + G   +A++
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIR-IGCELDEFISCCLVDMYSKCGLAGDALK 386

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           V  ++   + D V   A++      G  R A  + +R+
Sbjct: 387 VFVRI--EDPDVVSWSAIITCLDQKGQSREAAEVFKRM 422


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 246/502 (49%), Gaps = 44/502 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S    +G +  A +LF  +++PD     +MI    ++     A +L+  M          
Sbjct: 55  SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKF 114

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD--EGRRLF 112
               V ++     +VK G     R VF   +E N +   +LI  YF A   D    R LF
Sbjct: 115 TFPFVLKACTRLCWVKMGFGVHGR-VFRLGFESNTFVRNTLI--YFHANCGDLAVARALF 171

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D                         AK +V++W+ +  G  R     +AR+ F +MP K
Sbjct: 172 DGS-----------------------AKRDVVAWSALTAGYARRGELGVARQLFDEMPVK 208

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+WN MIT Y   G M  A +LF+ +P+R+V TWNAMI  Y   G    A+++   M 
Sbjct: 209 DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMR 268

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
               +P+E T  S+L++C  + +       H     +GF ++ S+        ++   G 
Sbjct: 269 SVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGF-RDLSVLLGNALIDMYAKCG- 326

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   F+ +  KDV +W +++   + HGH  +   LF  M K   +PDEITFVGV
Sbjct: 327 --SIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 384

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  CSHAG VE+GR+ F+LM   Y  +P   HY C+ D+L RAG + EA   +  M   E
Sbjct: 385 LVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKI-E 443

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + +V   LLGACR+HG+V +      +L++++   SG YVL +N++A+RGEWD   +VR
Sbjct: 444 PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVR 503

Query: 470 KKMERR-VKKVASFSQIEVKGK 490
           K M+   V+K A  S IE   K
Sbjct: 504 KLMDDSGVRKEAGCSLIEGDNK 525



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 51/252 (20%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T+ +   G++  A +LFDEM   D VS   MIT + +  ++  A  LF  +P  +R++V 
Sbjct: 186 TAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVP--KRDVVT 243

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AMI GYV  G   +A ++F+E+                  R V E             
Sbjct: 244 WNAMIAGYVLCGSNQQALEMFEEM------------------RSVGE------------- 272

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD--IVAWN 178
                           L  ++ ++S  + CT L      +       +M  +D  ++  N
Sbjct: 273 ----------------LPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGN 316

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++ +A E+F  M +++V TWN+++   A +G    ++ L   M + +  P
Sbjct: 317 ALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRP 376

Query: 239 NETTCTSILTSC 250
           +E T   +L +C
Sbjct: 377 DEITFVGVLVAC 388


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 160/539 (29%), Positives = 259/539 (48%), Gaps = 97/539 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASM-------------ITVFLRNHD------------LP 42
           G ++ A ++FD+ +QP+  +  +M             + +F R H             + 
Sbjct: 68  GGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVV 127

Query: 43  KAEALFRAMPESQR------------NIVAESAMIDGYVKAGRV--DEARKVFDEIYEGN 88
           K+ A   A  E +             N     A+I  Y   G V   +A KVF E+ + N
Sbjct: 128 KSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKN 187

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           V++WT++++ +   R +   RRLFD  P +  +VV W  VV     +G I   ++++   
Sbjct: 188 VFAWTAIVAAHVACRDMVSARRLFDLAPQR--DVVLWNVVV-----SGYIELGDMVA--- 237

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
                        ARE F +MP++D+++WN +++ Y   G +    +LF  MP RNV++W
Sbjct: 238 -------------ARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSW 284

Query: 209 NAMIDRYARNGPEGAAMKLLNLMF-----------QSRFMPNETTCTSILTSCE--GMLE 255
           N +I  Y RNG    A++    M                +PN+ T  ++LT+C   G LE
Sbjct: 285 NGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLE 344

Query: 256 -NMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                H  A  +G++           +  KC              +  A   F+ L+ KD
Sbjct: 345 MGKWVHVYAESIGYKGNLFVGNALIDMYAKCGV------------IEKALDVFDGLDVKD 392

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +++W  +I   + HGH      LF RM ++G +PD +TFVG+LS C+H GLV  G   F 
Sbjct: 393 IITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQ 452

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            M   Y   P+ EHY C+ D+L RAG + +A+ +V KM P E D V+  ALLGACR++ +
Sbjct: 453 SMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKM-PMEPDAVIWAALLGACRMYKN 511

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQI 485
           V MA+   +RLIEL+P++ G +V+ +N++   G   + A+++  M +   +KV   S I
Sbjct: 512 VEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 109/302 (36%), Gaps = 57/302 (18%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           + ITA    G + +A  +F+   Q N  TWNAM   YA+       + L   M ++   P
Sbjct: 59  SFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASP 118

Query: 239 NETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHY-----VFWDWGFQ 290
           N  T   ++ SC       E    H +  + GF+  T +       Y     VF    ++
Sbjct: 119 NCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYK 178

Query: 291 L-----------------------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           +                       D+ SAR  F+    +DVV W  ++  Y   G     
Sbjct: 179 VFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAA 238

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS--CL 385
             LF RM       D +++  VLS  +  G VE   K F  M       P    YS   L
Sbjct: 239 RELFDRM----PDRDVMSWNTVLSGYATNGEVESFVKLFEEM-------PVRNVYSWNGL 287

Query: 386 ADILRRAGQVKEAMRVVSKM-------PPHERDHVVLG------ALLGACRLHGDVRMAD 432
                R G  KEA+    +M            D VV+       A+L AC   GD+ M  
Sbjct: 288 IGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGK 347

Query: 433 YI 434
           ++
Sbjct: 348 WV 349



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 109/251 (43%), Gaps = 45/251 (17%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--------PE 53
           S +   G+V+   KLF+EM   +  S   +I  ++RN    +A   F+ M         E
Sbjct: 258 SGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKE 317

Query: 54  SQRNIVAES-----AMIDGYVKAGRVDEAR--KVFDEI--YEGNVYSWTSLISGYFKARQ 104
               +V  +     A++    + G ++  +   V+ E   Y+GN++   +LI  Y K   
Sbjct: 318 GSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGV 377

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-----------------LEVISWT 147
           +++   +FD   L +K++++W T++ G A +G +A                  +  +   
Sbjct: 378 IEKALDVFD--GLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGIL 435

Query: 148 TMCT--GLERNAM---TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP- 201
           + CT  GL RN +     +  +Y + +P   I  +  M+     AG + +A ++   MP 
Sbjct: 436 SACTHMGLVRNGLLHFQSMVDDYSI-VPQ--IEHYGCMVDLLGRAGLIDKAVDIVRKMPM 492

Query: 202 QRNVWTWNAMI 212
           + +   W A++
Sbjct: 493 EPDAVIWAALL 503


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 248/480 (51%), Gaps = 35/480 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   S+++D Y K G V  A +VFDE+ E NV  + ++I+G  ++  V + +RLF  M  
Sbjct: 173 VFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGM-- 230

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVI-----------------SWTTMCTGLERNAMTK 160
           K ++ +SWTT++ G   NGL A+   +                 S  T C GL      K
Sbjct: 231 KERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGK 290

Query: 161 LAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                 ++   N ++   +A++  Y    ++  A  +F  M  +NV +W AM+  Y +NG
Sbjct: 291 EIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNG 350

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTY 276
               A+++   M ++   P++ T  S+++SC  +    E    H  A+  G      +++
Sbjct: 351 FSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL-----ISF 405

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
               + +   +G    +  +   F+ +  +D VSWTA++  Y+  G   +   LF RML 
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLV 465

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            G KPD +TF+ VLS CS AGLVE+G++ F  M + +G  P ++HY+C+ D+  RAG+++
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLE 525

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA   ++KM P   D +    LL +CRL+G+  +  +  E L+EL P +   Y+L ++++
Sbjct: 526 EAKNFINKM-PFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIY 584

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           AA+G+W   AQ+R+ M E+  +K   FS I+ K K +   A     P  +  Y  L++++
Sbjct: 585 AAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLN 644



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 207/450 (46%), Gaps = 42/450 (9%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           +   ++ P+     ++I  + +  ++  A  +F  MP  Q N  + + M+  Y K+G + 
Sbjct: 31  IIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMP--QPNSFSWNTMLSAYSKSGDLS 88

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----PLKLKNVVSWTTVVL- 130
             +++F  +   +  SW SLISGY     V E  + ++ M     L L N ++++T++L 
Sbjct: 89  TMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL-NRITFSTMLLL 147

Query: 131 ----GCAH-----NGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAW 177
               GC       +G I K    ++  + + L     +  +  +A + F ++  +++V +
Sbjct: 148 VSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMY 207

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N MIT  + +G +  +  LF+ M +R+  +W  MI    +NG E  AM L   M Q    
Sbjct: 208 NTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMA 267

Query: 238 PNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGF 289
            ++ T  S+LT+C G+    E    H L IR G+          +   C C  V +    
Sbjct: 268 MDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRY---- 323

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                 A   F+R+  K+VVSWTAM++ Y  +G   +  R+F  M ++G +PD+ T   V
Sbjct: 324 ------AEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV 377

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S C++   +E+G + F+  +   G        + L  +  + G ++++ ++  +M    
Sbjct: 378 ISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF-- 434

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLI 439
           RD V   AL+      G       + ER++
Sbjct: 435 RDEVSWTALVSGYAQFGKANETIDLFERML 464



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 32/277 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G VK++ +LF  M + D +S  +MIT  ++N    +A  LFR M   Q  +  +     
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM--RQEGMAMDQYTFG 274

Query: 67  GYVKAGRVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
             + A     A K   EI        Y  NV+  ++L+  Y K R V     +F RM   
Sbjct: 275 SVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMA-- 332

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT---------KLAR-----E 164
            KNVVSWT +++G   NG   +   +       G+E +  T          LA      +
Sbjct: 333 NKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ 392

Query: 165 YFVQMPNKDIVAW----NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           +  Q     ++++    NA+IT Y   G++  +++LF+ M  R+  +W A++  YA+ G 
Sbjct: 393 FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGK 452

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
               + L   M      P+  T  ++L++C   G++E
Sbjct: 453 ANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVE 489



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 40/214 (18%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKA-----EALFRAMPES 54
           +G  G  +EA ++F +M     +PD  +  S+I+       L +      +AL   +   
Sbjct: 346 YGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISF 405

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
              I   +A+I  Y K G ++++ ++FDE+   +  SWT+L+SGY +  + +E   LF+R
Sbjct: 406 ---ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 115 MPLK-LK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM-PN 171
           M ++ LK + V++  V+  C+  GL+ +                      ++YF  M  +
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVER---------------------GQQYFESMLKD 501

Query: 172 KDIVAWNAMITAYVD----AGNMAQASELFNLMP 201
             I+ ++   T  +D    AG + +A    N MP
Sbjct: 502 HGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMP 535


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 246/502 (49%), Gaps = 44/502 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S    +G +  A +LF  +++PD     +MI    ++     A +L+  M          
Sbjct: 20  SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKF 79

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD--EGRRLF 112
               V ++     +VK G     R VF   +E N +   +LI  YF A   D    R LF
Sbjct: 80  TFPFVLKACTRLCWVKMGFGVHGR-VFRLGFESNTFVRNTLI--YFHANCGDLAVARALF 136

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D                         AK +V++W+ +  G  R     +AR+ F +MP K
Sbjct: 137 DGS-----------------------AKRDVVAWSALTAGYARRGELGVARQLFDEMPVK 173

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+WN MIT Y   G M  A +LF+ +P+R+V TWNAMI  Y   G    A+++   M 
Sbjct: 174 DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMR 233

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
               +P+E T  S+L++C  + +       H     +GF ++ S+        ++   G 
Sbjct: 234 SVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGF-RDLSVLLGNALIDMYAKCG- 291

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   F+ +  KDV +W +++   + HGH  +   LF  M K   +PDEITFVGV
Sbjct: 292 --SIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 349

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  CSHAG VE+GR+ F+LM   Y  +P   HY C+ D+L RAG + EA   +  M   E
Sbjct: 350 LVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKI-E 408

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + +V   LLGACR+HG+V +      +L++++   SG YVL +N++A+RGEWD   +VR
Sbjct: 409 PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVR 468

Query: 470 KKMERR-VKKVASFSQIEVKGK 490
           K M+   V+K A  S IE   K
Sbjct: 469 KLMDDSGVRKEAGCSLIEGDNK 490



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 51/252 (20%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T+ +   G++  A +LFDEM   D VS   MIT + +  ++  A  LF  +P  +R++V 
Sbjct: 151 TAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVP--KRDVVT 208

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AMI GYV  G   +A ++F+E+                  R V E             
Sbjct: 209 WNAMIAGYVLCGSNQQALEMFEEM------------------RSVGE------------- 237

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD--IVAWN 178
                           L  ++ ++S  + CT L      +       +M  +D  ++  N
Sbjct: 238 ----------------LPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGN 281

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++ +A E+F  M +++V TWN+++   A +G    ++ L   M + +  P
Sbjct: 282 ALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRP 341

Query: 239 NETTCTSILTSC 250
           +E T   +L +C
Sbjct: 342 DEITFVGVLVAC 353


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 226/447 (50%), Gaps = 38/447 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + ++  Y     +  ARKVFD   + ++ SWT++I GY K     EG  LF  M 
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEM- 217

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK--DI 174
                          C  N     + ++   + C  L    + +    Y ++  N   D+
Sbjct: 218 ---------------CGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA++  Y+  G+   A ++F  MP +NV +WN+MI   A+ G    ++ +   M + 
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 235 RFMPNETTCTSILTSCE--GMLE-NMLAHALAIRL-----GFEQETSLTYKCTCHYVFWD 286
              P++ T  ++L SC   G+LE     HA   R      GF     +     C      
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCG----- 377

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 ++ A   F+ +  KDV S+TAMI+  + HG G +   LF+ M K G +PDE+TF
Sbjct: 378 -----SIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTF 432

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           VGVL+ CSH GLVE+GRK F  MS  Y  +P+ EHY C+ D+L RAG + EA   +  MP
Sbjct: 433 VGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMP 492

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             E D  VLGALLGAC++HG V + + + +++ +++P   GAYVL +N++++   W +  
Sbjct: 493 I-EPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDAL 551

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDH 492
           ++RK M ER ++K    S IE+ G  H
Sbjct: 552 KLRKTMKERNLEKTPGCSSIELDGVIH 578


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/520 (30%), Positives = 251/520 (48%), Gaps = 61/520 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP----------ESQR 56
            G + +A  +F+++ QPD VS  ++I   + +    +A  L   M           + + 
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMES 365

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++     ++D Y K   +++AR  F+ + E ++ +W ++ISGY +  +  E   LF  M 
Sbjct: 366 DLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMH 425

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              K  + +    L        A L+V+       GL         +  F    + DI  
Sbjct: 426 ---KEGIGFNQTTLSTILKS-TAGLQVVHVCRQVHGLS-------VKSGF----HSDIYV 470

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N++I +Y    ++  A  +F      ++ ++ +MI  YA+ G    A+KL   M     
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV--- 293
            P+   C+S+L +C  +              FEQ   L      H     +GF LD+   
Sbjct: 531 KPDRFVCSSLLNACANLS------------AFEQGKQL------HVHILKYGFVLDIFAG 572

Query: 294 -------------NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                        + A  AF  L  + +VSW+AMI   + HGHG Q  +LF +MLK G  
Sbjct: 573 NSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVS 632

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+ IT V VL  C+HAGLV + +  F  M   +GFKP  EHY+C+ D+L RAG++ EA+ 
Sbjct: 633 PNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVE 692

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           +V+KM P E +  V GALLGA R+H DV +     E L  L+P  SG +VL AN++A+ G
Sbjct: 693 LVNKM-PFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAG 751

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           +W+  A+VR+ M + +VKK    S IEVK K +T L   R
Sbjct: 752 KWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDR 791



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 210/517 (40%), Gaps = 105/517 (20%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A KL DE S+PD VS +++I+ + +N     A   F  M      +          +KA 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM--HLLGVKCNEFTFSSVLKAC 167

Query: 73  RVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + +  ++  ++        +EG+V+   +L+  Y K  +  + +RLFD +P   +NVVS
Sbjct: 168 SIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP--ERNVVS 225

Query: 125 WTTV------------VLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLAREYFV 167
           W  +             +G  +  +++ ++     + S    CTGL  ++  K+   Y +
Sbjct: 226 WNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLI 285

Query: 168 QMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++  + D  + NA++  Y   G++A A  +F  + Q ++ +WNA+I     +     A++
Sbjct: 286 KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALE 345

Query: 227 LLNLM---FQSRFMPNE---------------TTC---------------------TSIL 247
           LL  M     S  M  +               + C                      +I+
Sbjct: 346 LLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 405

Query: 248 TSCEGMLENMLAHALAIR-----LGFEQET-SLTYKCTC-----------HYVFWDWGFQ 290
           +      E+M A +L +      +GF Q T S   K T            H +    GF 
Sbjct: 406 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 465

Query: 291 LD---VNS-------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
            D   VNS             A   FE     D+VS+T+MI AY+ +G G +  +LF  M
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 525

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
                KPD      +L+ C++    E+G K  ++    YGF       + L ++  + G 
Sbjct: 526 QDMELKPDRFVCSSLLNACANLSAFEQG-KQLHVHILKYGFVLDIFAGNSLVNMYAKCGS 584

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           + +A R  S++   ER  V   A++G    HG  R A
Sbjct: 585 IDDAGRAFSELT--ERGIVSWSAMIGGLAQHGHGRQA 619



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 41/322 (12%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL-KLK-N 121
           +I+ Y K      ARK+ DE  E ++ SW++LISGY +          F  M L  +K N
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 122 VVSWTTVVLGCAHNGLIAKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             ++++V+  C+   ++  L +   +    + +G E                  D+   N
Sbjct: 157 EFTFSSVLKACS---IVKDLRIGKQVHGVVVVSGFE-----------------GDVFVAN 196

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            ++  Y        +  LF+ +P+RNV +WNA+   Y +    G A+ L   M  S   P
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKP 256

Query: 239 NETTCTSILTSCEGMLEN---MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           NE + +S++ +C G+ ++    + H   I+LG++ +          Y         D+  
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG-----DLAD 311

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM--------LKSGTKPDEITFV 347
           A   FE+++  D+VSW A+I     H H  Q   L  +M        +K   + D    V
Sbjct: 312 AISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSV 371

Query: 348 GVLSDCSHAGLVEKGRKTFNLM 369
           G++   S   L+E  R  FNL+
Sbjct: 372 GLVDMYSKCDLLEDARMAFNLL 393



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 17/254 (6%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I  Y        A +L +   + ++ +W+A+I  YA+NG  G A+   + M      
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            NE T +S+L +C  + +  +    H + +  GFE +  +       Y   D      ++
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF----LD 210

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S RL F+ +  ++VVSW A+   Y       +   LF  M+ SG KP+E +   +++ C+
Sbjct: 211 SKRL-FDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 355 HAGLVEKGRKTF---NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             GL +  R       L+   Y + P +   + L D+  + G + +A+ V  K+   + D
Sbjct: 270 --GLRDSSRGKIIHGYLIKLGYDWDPFSA--NALVDMYAKVGDLADAISVFEKIK--QPD 323

Query: 412 HVVLGALLGACRLH 425
            V   A++  C LH
Sbjct: 324 IVSWNAVIAGCVLH 337



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 58/250 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-------- 55
           +G    V++A ++F+E +  D VS  SMIT + +     +A  LF  M + +        
Sbjct: 478 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVC 537

Query: 56  -----------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         +I A +++++ Y K G +D+A + F E+ E
Sbjct: 538 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 597

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEV 143
             + SW+++I G  +     +  +LF++M LK     N ++  +V+  C H GL+ + + 
Sbjct: 598 RGIVSWSAMIGGLAQHGHGRQALQLFNQM-LKEGVSPNHITLVSVLGACNHAGLVTEAK- 655

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-Q 202
           + + +M              E F   P ++   +  MI     AG + +A EL N MP +
Sbjct: 656 LYFESM-------------EELFGFKPMQE--HYACMIDLLGRAGKINEAVELVNKMPFE 700

Query: 203 RNVWTWNAMI 212
            N   W A++
Sbjct: 701 ANASVWGALL 710



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 14/205 (6%)

Query: 227 LLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSL-TYKCTCHY 282
           +LNL+ +  F P   + + +L+ C   + +   +  HA   + G   + S+  +    + 
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
               +G+      AR   +     D+VSW+A+I  Y+ +G G      F  M   G K +
Sbjct: 103 KCRXFGY------ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           E TF  VL  CS    +  G++   ++  + GF+      + L  +  +  +  ++ R+ 
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 403 SKMPPHERDHVVLGALLGACRLHGD 427
            ++P  ER+ V   AL  +C +  D
Sbjct: 216 DEIP--ERNVVSWNALF-SCYVQXD 237


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 231/453 (50%), Gaps = 31/453 (6%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +A  LF  MPE  RN+V  + M++GY K G VDEAR++FD I + +V SW ++I GY + 
Sbjct: 238 EARRLFDEMPE--RNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQK 295

Query: 103 RQVDEGRRLFDRM--------PLKLKNVVS----WTTVVLGCAHNGLIAKLEVISW---- 146
            ++ E   ++  M         + + N+VS     T +V G   +G + K     +    
Sbjct: 296 GRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQ 355

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
           TT+        M  LA   F       + +WNA+   ++  G M  A + F+ M  R+V+
Sbjct: 356 TTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVF 415

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENMLAHALA 263
           +W+ MI  YA++     A++L + M      PNE T  S+ ++    G L E  LAH   
Sbjct: 416 SWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHE-- 473

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERL--EAKDVVSWTAMILAYSN 320
               + +  S+ +         D   +   +NSA   F ++  E   V  W A+I   ++
Sbjct: 474 ----YMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLAS 529

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HGH      +F+ M +   KP+ ITF+GVLS C HAGLVE G++ F  M  AY  +P  +
Sbjct: 530 HGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIK 589

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY C+ DIL RAG ++EA  ++  M P E D V+ G LL ACR HG+V + +   E L  
Sbjct: 590 HYGCMIDILGRAGLLEEAEEMIRSM-PMEADIVIWGTLLAACRTHGNVNIGERAAENLAR 648

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           L PS  G  VL +N++A  G+W+E + VR  M+
Sbjct: 649 LAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQ 681



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 190/435 (43%), Gaps = 85/435 (19%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N   ++++I+ Y K G +  A+ +FD     +  S   ++SGY +  Q+D  R+LFD MP
Sbjct: 87  NTFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMP 146

Query: 117 LKLKNVVSWTTVVLG-----------------------------------CAH------- 134
              K  VS+TT+++G                                   C+H       
Sbjct: 147 --NKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNC 204

Query: 135 ---NGLIAKLEVISWTTMCTGLERN----AMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
              +GL+ K+ V+    + T L       +  + AR  F +MP +++V WN M+  Y   
Sbjct: 205 RMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKT 264

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G + +A ELF+ +  ++V +W  MID Y + G    A+++   M Q+   PNE    +++
Sbjct: 265 GLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLV 324

Query: 248 TSC---EGMLENMLAHALAIRLGFE-----QETSLTYKCTC----------------HYV 283
           ++C     +++    H   ++ GF+     Q T + +   C                H  
Sbjct: 325 SACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLE 384

Query: 284 FWD---WGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            W+    GF  +  ++ A   F+++  +DV SW+ MI  Y+   H      LF +ML  G
Sbjct: 385 SWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGG 444

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KP+E+T V V S  +  G +++G+     M R+          + L D+  + G +  A
Sbjct: 445 IKPNEVTMVSVFSAIATLGTLQEGKLAHEYM-RSESIPFNDNLRAALIDMYAKCGSINSA 503

Query: 399 MRVVSKMPPHERDHV 413
           ++  +++    RD V
Sbjct: 504 LQFFNQI----RDEV 514



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 158/385 (41%), Gaps = 81/385 (21%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--------NI 58
           TG V EA +LFD +   D +S  +MI  +++   L +A  ++RAM ++          N+
Sbjct: 264 TGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNL 323

Query: 59  VAE----SAMIDG-------------------------YVKAGRVDEARKVFDEIYEGNV 89
           V+     +A++DG                         Y   G +D A   F+   + ++
Sbjct: 324 VSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHL 383

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW +L +G+ K   +D   + FD+M   +++V SW+T++ G A +        +    +
Sbjct: 384 ESWNALTAGFIKNGMMDHALKTFDKM--HVRDVFSWSTMISGYAQSEHPKMALELFHKML 441

Query: 150 CTGLERNAMT-----------------KLAREYF--VQMPNKDIVAWNAMITAYVDAGNM 190
             G++ N +T                 KLA EY     +P  D +   A+I  Y   G++
Sbjct: 442 AGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLR-AALIDMYAKCGSI 500

Query: 191 AQASELFNLMPQR--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
             A + FN +     +V  WNA+I   A +G     +++ + M +    PN  T   +L+
Sbjct: 501 NSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLS 560

Query: 249 SC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-- 304
           +C   G++E+       ++  +  E  + +          +G  +D+       E  E  
Sbjct: 561 ACCHAGLVESGKRIFKTMKSAYNVEPDIKH----------YGCMIDILGRAGLLEEAEEM 610

Query: 305 ------AKDVVSWTAMILAYSNHGH 323
                   D+V W  ++ A   HG+
Sbjct: 611 IRSMPMEADIVIWGTLLAACRTHGN 635



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +++AR  F+ +  K  VS+T MI+ +  +G   +   +F  M   G  P+++T V V+S 
Sbjct: 135 IDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISA 194

Query: 353 CSHAGLVEKGRKTFNLMSRAYG-----FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           CSH G V   R    L+ + +            H  CL         V+EA R+  +MP 
Sbjct: 195 CSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCS------GVREARRLFDEMP- 247

Query: 408 HERDHVVLGALL 419
            ER+ V    +L
Sbjct: 248 -ERNLVTWNVML 258


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/525 (29%), Positives = 255/525 (48%), Gaps = 78/525 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++++A  LFD MS    +S  +M++ +  N+D   A  +F+ M                
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRME--------------- 135

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV--SW 125
                          E  E N+ +WTSLIS Y ++   +E   LF  M +K   V   + 
Sbjct: 136 --------------SEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEAL 181

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR--------------EYFVQMPN 171
             V+  CA  G   + ++I    +  G E  +  K A                 F++M N
Sbjct: 182 AVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKN 241

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQR--------NVWTWNAMIDRYARNGPEGA 223
           K + +WNA+IT++ +AG   +A E+F+ + +         NV +W+A+ID +A  G E  
Sbjct: 242 KSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKE 301

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR-------LGFEQETS 273
           A++L   M  ++ + N  T +++L+ C  +    L    H   +R       L      +
Sbjct: 302 ALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVN 361

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +  KC C            +    + FE+ E KD++SW +MI  Y  HG G      F +
Sbjct: 362 MYAKCGC------------LKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQ 409

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M+K G KPD +TFV VLS CSH+GLV +GR+ F+ M + Y  +P+ EHY+C+ D+L RAG
Sbjct: 410 MIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAG 469

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL-QPSSSGAYVLS 452
            ++EA  +V  MP    +  V GALL +CR+H +  +A+     L  L    ++G Y+L 
Sbjct: 470 LLREASEIVKNMPV-APNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLL 528

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +N++AA G W++ A+VR   + + +KK    S I+V+   +T  A
Sbjct: 529 SNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFSA 573



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 57/252 (22%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I  Y   G M  A  LF+ M  R+  +WN M+  YA N     A+++   M      
Sbjct: 81  NELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGME 140

Query: 238 PNETTCTSILTS-----------------------------------CEGM---LENMLA 259
           PN  T TS+++S                                   C  +   +   + 
Sbjct: 141 PNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKII 200

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           H  A++ GFE+ + +     C Y     G   DVN A   F  ++ K + SW A+I +++
Sbjct: 201 HEYAVKGGFEEYSFVKSALICVY-----GKHGDVNGAWNLFLEMKNKSLASWNALITSHA 255

Query: 320 NHGHGFQVFRLFARMLKSG----TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
             G   +   +F+++ +SG     +P+ +++  ++      G   KGR+       A   
Sbjct: 256 EAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIID-----GFASKGRE-----KEALEL 305

Query: 376 KPRAEHYSCLAD 387
             R +H   LA+
Sbjct: 306 FRRMQHAKILAN 317


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 234/457 (51%), Gaps = 30/457 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S ++D Y K G + +AR+VFDE+   NV    ++I+G  + + V E R LF+   ++ ++
Sbjct: 184 SPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFE--AIEERD 241

Query: 122 VVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMTKLARE 164
            ++WTT+V G   NGL                 I +    S  T C  L      K    
Sbjct: 242 SITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 301

Query: 165 YFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +   +D +   +A++  Y    ++  A  +F  M  +N+ +W AMI  Y +NG    
Sbjct: 302 YITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEE 361

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTC 280
           A+++ + M +    P++ T  S+++SC  +    E    H LA+  G     +++     
Sbjct: 362 AVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVT 421

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y     G    +  A   F+ +   D VSWTA+++ Y+  G   +   LF +ML  G K
Sbjct: 422 LY-----GKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVK 476

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD +TF+GVLS CS +GLV+KGR  F+ M + +   P  +HY+C+ D+  R+G +K+A  
Sbjct: 477 PDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEE 536

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            + +M P   D      LL ACRL GD+ +  +  E L++L P +  +YVL  ++HA++G
Sbjct: 537 FIKQM-PRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKG 595

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           EW++ A++R+ M +R+VKK    S I+ K K H   A
Sbjct: 596 EWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSA 632



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 186/416 (44%), Gaps = 36/416 (8%)

Query: 20  MSQPDPVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           +  P P     +++T +  +  LP A  +F AMP   RN+V  ++++    +AG V +  
Sbjct: 40  LPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMP--GRNLVTGNSLLSALARAGLVRDME 97

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAH 134
           ++F  + + +  S+ +L++G+ +A         +  +      V    ++ + VV+  + 
Sbjct: 98  RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASA 157

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKL--------------AREYFVQMPNKDIVAWNAM 180
            G  A    +    +  G    A T                AR  F +M  K++V  N M
Sbjct: 158 LGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           IT  +    +A+A  LF  + +R+  TW  M+    +NG E  A+ +   M       ++
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  SILT+C  +    E    HA   R  +E    +       Y            S R
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYS--------KCRSVR 329

Query: 298 LA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           LA   F R+  K+++SWTAMI+ Y  +G G +  R+F+ M + G KPD+ T   V+S C+
Sbjct: 330 LAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA 389

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           +   +E+G + F+ ++   G +P     + L  +  + G +++A R+  +M  H++
Sbjct: 390 NLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 444



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 65/303 (21%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G + +A ++FDEM   + V C +MIT  LR   + +A ALF A+ E  R+ +  + M+ 
Sbjct: 193 VGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEE--RDSITWTTMVT 250

Query: 67  GYVKAGRVDEARKVFDEI---------------------------------------YEG 87
           G  + G   EA  VF  +                                       YE 
Sbjct: 251 GLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYED 310

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAK 140
           NV+  ++L+  Y K R V     +F RM    KN++SWT +++G   NG       + ++
Sbjct: 311 NVFVGSALVDMYSKCRSVRLAEAVFRRM--MWKNIISWTAMIVGYGQNGCGEEAVRVFSE 368

Query: 141 LE-------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
           ++             VIS       LE  A         V      +   NA++T Y   
Sbjct: 369 MQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA--LVSGLRPYVTVSNALVTLYGKC 426

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  LF+ M   +  +W A++  YA+ G     + L   M      P+  T   +L
Sbjct: 427 GSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 248 TSC 250
           ++C
Sbjct: 487 SAC 489



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 30/271 (11%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPK-AEALFRAMPESQRNI 58
           +G  G  +EA ++F EM     +PD  +  S+I+       L + A+    A+    R  
Sbjct: 353 YGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPY 412

Query: 59  VAES-AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           V  S A++  Y K G +++A ++FDE+   +  SWT+L+ GY +  +  E   LF++M  
Sbjct: 413 VTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLS 472

Query: 118 K--LKNVVSWTTVVLGCAHNGLIAK-----------LEVIS----WTTMCTGLERNAMTK 160
           K    + V++  V+  C+ +GL+ K            +++     +T M     R+   K
Sbjct: 473 KGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLK 532

Query: 161 LAREYFVQMPN-KDIVAWNAMITAYVDAGNMA----QASELFNLMPQRNVWTWNAMIDRY 215
            A E+  QMP   D   W  +++A    G+M      A  L  L PQ N  ++  +   +
Sbjct: 533 QAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQ-NPASYVLLCSMH 591

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           A  G      KL   M + R +  E  C+ I
Sbjct: 592 ASKGEWNDVAKLRRGM-RDRQVKKEPGCSWI 621


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 243/492 (49%), Gaps = 58/492 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++I  Y   G +D A KVF  I E +V SW S+I+G+ +    D+   LF +M 
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN----------AMTKL--- 161
            +    + V+   V+  CA    I  LE      +C+ +E N          AM  +   
Sbjct: 225 SEDVKASHVTMVGVLSACAK---IRNLEF--GRQVCSYIEENRVNVNLTLANAMLDMYTK 279

Query: 162 ------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                 A+  F  M  KD V W  M+  Y  + +   A E+ N MPQ+++  WNA+I  Y
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339

Query: 216 ARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLG 267
            +NG P  A +    L  Q     N+ T  S L++C   G LE     +       IR+ 
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMN 399

Query: 268 FEQETSLTY---KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           F   ++L +   KC             D+  +R  F  +E +DV  W+AMI   + HG G
Sbjct: 400 FHVTSALIHMYSKCG------------DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   +F +M ++  KP+ +TF  V   CSH GLV++    F+ M   YG  P  +HY+C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507

Query: 385 LADILRRAGQVKEAMRVVSKMP-PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           + D+L R+G +++A++ +  MP P      V GALLGAC++H ++ +A+    RL+EL+P
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTS--VWGALLGACKIHANLNLAEMACTRLLELEP 565

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----P 497
            + GA+VL +N++A  G+W+  +++RK M    +KK    S IE+ G  H  L+     P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625

Query: 498 MREMGYVVLKEV 509
           M E  Y  L EV
Sbjct: 626 MSEKVYGKLHEV 637



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 134/306 (43%), Gaps = 65/306 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP----------- 52
           F C G +  A K+F  + + D VS  SMI  F++     KA  LF+ M            
Sbjct: 177 FSC-GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 235

Query: 53  -----------------------ESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                  E  R   N+   +AM+D Y K G +++A+++FD + E
Sbjct: 236 VGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 295

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----LIA-- 139
            +  +WT+++ GY  +   +  R + + MP   K++V+W  ++     NG     LI   
Sbjct: 296 KDNVTWTTMLDGYAISEDYEAAREVLNSMP--QKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 140 --------KLEVISWTTMCTGLERNAMTKLAR-------EYFVQMPNKDIVAWNAMITAY 184
                   KL  I+  +  +   +    +L R       ++ ++M   +    +A+I  Y
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM---NFHVTSALIHMY 410

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G++ ++ E+FN + +R+V+ W+AMI   A +G    A+ +   M ++   PN  T T
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFT 470

Query: 245 SILTSC 250
           ++  +C
Sbjct: 471 NVFCAC 476



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 115/283 (40%), Gaps = 41/283 (14%)

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
            L   A  + AR+ F ++P  +  AWN +I AY    +           P  ++W +   
Sbjct: 73  ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPD-----------PVLSIWAF--- 118

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGF 268
                           L+++ +S+  PN+ T   ++ +   +    L    H +A++   
Sbjct: 119 ----------------LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162

Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
             +  +       + ++  G   D++SA   F  ++ KDVVSW +MI  +   G   +  
Sbjct: 163 GSDVFVANSLI--HCYFSCG---DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF +M     K   +T VGVLS C+    +E GR+  + +             + + D+
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR-VNVNLTLANAMLDM 276

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             + G +++A R+   M   E+D+V    +L    +  D   A
Sbjct: 277 YTKCGSIEDAKRLFDAM--EEKDNVTWTTMLDGYAISEDYEAA 317


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 196/346 (56%), Gaps = 24/346 (6%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +MP +D+V WN MI   +  G+   A +LF+ MP+RNV +W +MI  Y + G  
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLT--- 275
             A+ L   M ++    NE T  ++L +C   G L+  M  H  + R GF++   ++   
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 276 ----YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                KC C            +  A   FE +E + VVSW+AMI   + HG   +  RLF
Sbjct: 302 IDMYVKCGC------------LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
           + M + G +P+ +TF+G+L  CSH GL+ +GR+ F  M+R YG  P+ EHY C+ D+L R
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG + EA   +  M P + + VV GALLGACR+H +V MA+   + L+EL P + G YV+
Sbjct: 410 AGLLHEAHEFILNM-PMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVV 468

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            +N++A  G W++ A+VRK M +R+VKK   +S I V G  H  +A
Sbjct: 469 LSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 26/266 (9%)

Query: 12  EATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           +A  LF  + Q    PD  +C+S++   L   DL     L   + +   + N+  ++ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
             Y   G + EAR +F+++ + +V +W  +I+   K    +    LF RMP   +NV SW
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMP--ERNVRSW 228

Query: 126 TTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQ 168
           T+++ G    G       L AK+E          V++    C  L    +     EY  +
Sbjct: 229 TSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR 288

Query: 169 MP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
               +++   N +I  YV  G + +A ++F  M +R V +W+AMI   A +G    A++L
Sbjct: 289 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRL 348

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGM 253
            + M Q    PN  T   +L +C  M
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHM 374



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 46/284 (16%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            ++ A+  + + AQ  ++F  + ++    + WN+ +   A       A+ L   + Q   
Sbjct: 67  GLVCAFTPSFHYAQ--QIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDV 124

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  TC+S+L +C  +L+     + H +  ++GF   ++L  +    +++   G   ++
Sbjct: 125 CPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF--RSNLYLQNMIVHLYASCG---EM 179

Query: 294 NSARLAFERLEAKDVV-------------------------------SWTAMILAYSNHG 322
             ARL FE++  +DVV                               SWT+MI  Y   G
Sbjct: 180 GEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCG 239

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              +   LFA+M ++G K +E+T V VL+ C+  G ++ G +     +R +GFK      
Sbjct: 240 KAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR-HGFKRNVRIS 298

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + L D+  + G ++EA +V  +M   ER  V   A++G   +HG
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAMHG 340



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSC--ASMITVFLRNHDLPKAEALFRAMPES-----QRNIVA 60
           GK KEA  LF +M +   V C   +++ V     DL   +   R    S     +RN+  
Sbjct: 239 GKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRI 297

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
            + +ID YVK G ++EA KVF+E+ E  V SW+++I G     + +E  RLF  M     
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357

Query: 119 LKNVVSWTTVVLGCAHNGLIAK---------------LEVISWTTMCTGLERNAMTKLAR 163
             N V++  ++  C+H GLI++                ++  +  M   L R  +   A 
Sbjct: 358 EPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAH 417

Query: 164 EYFVQMPNK-DIVAWNAMITAYVDAGNMAQASE 195
           E+ + MP K + V W A++ A     N+  A E
Sbjct: 418 EFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 450


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 196/346 (56%), Gaps = 24/346 (6%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +MP +D+V WN MI   +  G+   A +LF+ MP+RNV +W +MI  Y + G  
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLT--- 275
             A+ L   M ++    NE T  ++L +C   G L+  M  H  + R GF++   ++   
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTL 301

Query: 276 ----YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                KC C            +  A   FE +E + VVSW+AMI   + HG   +  RLF
Sbjct: 302 IDMYVKCGC------------LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
           + M + G +P+ +TF+G+L  CSH GL+ +GR+ F  M+R YG  P+ EHY C+ D+L R
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG + EA   +  M P + + VV GALLGACR+H +V MA+   + L+EL P + G YV+
Sbjct: 410 AGLLHEAHEFILNM-PMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVV 468

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            +N++A  G W++ A+VRK M +R+VKK   +S I V G  H  +A
Sbjct: 469 LSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 26/266 (9%)

Query: 12  EATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           +A  LF  + Q    PD  +C+S++   L   DL     L   + +   + N+  ++ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
             Y   G + EAR +F+++ + +V +W  +I+   K    +    LF RMP   +NV SW
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMP--ERNVRSW 228

Query: 126 TTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQ 168
           T+++ G    G       L AK+E          V++    C  L    +     EY  +
Sbjct: 229 TSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR 288

Query: 169 MP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
               +++   N +I  YV  G + +A ++F  M +R V +W+AMI   A +G    A++L
Sbjct: 289 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRL 348

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGM 253
            + M Q    PN  T   +L +C  M
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHM 374



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 46/284 (16%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            ++ A+  + + AQ  ++F  + ++    + WN+ +   A       A+ L   + Q   
Sbjct: 67  GLVCAFTPSFHYAQ--QIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDV 124

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  TC+S+L +C  +L+     + H +  ++GF   ++L  +    +++   G   ++
Sbjct: 125 CPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF--RSNLYLQNMIVHLYASCG---EM 179

Query: 294 NSARLAFERLEAKDVV-------------------------------SWTAMILAYSNHG 322
             ARL FE++  +DVV                               SWT+MI  Y   G
Sbjct: 180 GEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCG 239

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              +   LFA+M ++G K +E+T V VL+ C+  G ++ G +     +R +GFK      
Sbjct: 240 KAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR-HGFKRNVRIS 298

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + L D+  + G ++EA +V  +M   ER  V   A++G   +HG
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAMHG 340



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSC--ASMITVFLRNHDLPKAEALFRAMPES-----QRNIVA 60
           GK KEA  LF +M +   V C   +++ V     DL   +   R    S     +RN+  
Sbjct: 239 GKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRI 297

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
            + +ID YVK G ++EA KVF+E+ E  V SW+++I G     + +E  RLF  M     
Sbjct: 298 SNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357

Query: 119 LKNVVSWTTVVLGCAHNGLIAK---------------LEVISWTTMCTGLERNAMTKLAR 163
             N V++  ++  C+H GLI++                ++  +  M   L R  +   A 
Sbjct: 358 EPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAH 417

Query: 164 EYFVQMPNK-DIVAWNAMITAYVDAGNMAQASE 195
           E+ + MP K + V W A++ A     N+  A E
Sbjct: 418 EFILNMPMKPNGVVWGALLGACRVHKNVEMAEE 450


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 242/455 (53%), Gaps = 22/455 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR+VFD + + +  S+ S+I GY K   V+    LFD MP
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMP 186

Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
            + +N+++W +++ G A       + +KL       ++ISW +M  G  ++   + A+  
Sbjct: 187 REKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGL 246

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + QA  LF+ MP R+V  +N+M+  + +N     A+
Sbjct: 247 FDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEAL 306

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
           ++ N M  +S   P+ETT   +L++   +    L  A+ + L   E+   L+ K     +
Sbjct: 307 EVFNHMEKESHLSPDETTLVIVLSAIAQL--GRLTKAIDMHLYIVEKRFLLSGKLGVALI 364

Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
             +   G    +  A   FE +E+K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 365 DMYSKCG---SIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKP 421

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 422 DHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNL 481

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 482 IEEMPIEPND-VIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGM 540

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           W +  +VR  M E++++K+   S IE+ G+ H  L
Sbjct: 541 WKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFL 575



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 65/399 (16%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV----- 59
           GC G    A ++FD M Q D VS  SMI  +++   +  A  LF  MP  +RN++     
Sbjct: 142 GCLGF---ARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSM 198

Query: 60  ---------------------------AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                      + ++MI GYVK GR+++A+ +FD +   +V +W
Sbjct: 199 IGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTW 258

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVISW----- 146
             +I GY K   V + + LFD+MP   ++VV++ +++ G   N   I  LEV +      
Sbjct: 259 AIMIDGYGKLGLVHQAKTLFDQMP--HRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKES 316

Query: 147 ------TTMCTGLERNA----MTKLAREYFVQMPNKDIVAWN---AMITAYVDAGNMAQA 193
                 TT+   L   A    +TK    +   +  + +++     A+I  Y   G++  A
Sbjct: 317 HLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHA 376

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--E 251
             +F  +  +++  WNAMI   A +G   +A  +L  + +    P+  T   +L +C   
Sbjct: 377 MRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 436

Query: 252 GMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
           G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV+ 
Sbjct: 437 GLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN--LIEEMPIEPNDVI- 493

Query: 311 WTAMILAYSNHGHGFQVFRLFAR--MLKSGTKPDEITFV 347
           W   + A S+H   F+   L A+  +L++G  P     +
Sbjct: 494 WRTFLNACSHHKE-FETGELVAKHLILQAGYNPSSYVLL 531


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 152/487 (31%), Positives = 242/487 (49%), Gaps = 37/487 (7%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMIDGYVK 70
           A  LF  M Q D  + + +I   L +  L    A+   + +  S  +    +A+ID Y K
Sbjct: 142 AVSLFSAMPQRDSFTYSFLIKA-LSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSK 200

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
            G   +A KVF+E+   +  SW S ++   +  +V   RR+FD MP K            
Sbjct: 201 NGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDK------------ 248

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
                      + +SW T+  G  +    + A E F  MP +++V+W+ +++ Y   G++
Sbjct: 249 -----------DTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDI 297

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A  +F+ MP +N+ TW  M+   A+NG    A +L   M ++    +     SIL +C
Sbjct: 298 EMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAAC 357

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFE-RLEAKDV 308
                  L   +   +   Q    T+ C     +F   G    VN A   F+  +  KD 
Sbjct: 358 AESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGC---VNRADYVFDTEIAEKDS 414

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSW  +I  ++ HGHG +    FA+M   G +PD +T + VLS C+H G VE+GR+ F+ 
Sbjct: 415 VSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSN 474

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHG 426
           M R YG  P+ EHY C+ D+L R G ++EA+ ++  MP  P+E   V+ G+LL ACRLH 
Sbjct: 475 MERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNE---VIWGSLLSACRLHK 531

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQI 485
           +V  A+     L +LQPS++G Y + +N++A  G+W + A+ R +M+    +K A  S I
Sbjct: 532 NVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWI 591

Query: 486 EVKGKDH 492
           E+    H
Sbjct: 592 ELDEAFH 598



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 138/269 (51%), Gaps = 23/269 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G   +A+K+F+EM + D VS  S +   +R  ++  A  +F  MP+  ++ V+ + 
Sbjct: 198 YSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPD--KDTVSWNT 255

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++DGY KAG++++A ++F  + E NV SW++++SGY K   ++  R +FD+MP   KN+V
Sbjct: 256 VLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMP--TKNLV 313

Query: 124 SWTTVVLGCAHNGLI------------AKLE-----VISWTTMCTGLERNAMTKLAREYF 166
           +WT +V  CA NGL+            A +E     V+S    C      A+ K    Y 
Sbjct: 314 TWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYV 373

Query: 167 -VQMPNKDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAA 224
             +   +     NAMI  +   G + +A  +F+  + +++  +WN +I  +A +G    A
Sbjct: 374 RTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKA 433

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGM 253
           +     M    F P+  T  ++L++C  M
Sbjct: 434 LDFFAQMKLQGFRPDAVTMINVLSACTHM 462



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 177/407 (43%), Gaps = 48/407 (11%)

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----------IAKLE 142
           + LIS Y   R++   RR+F   P          T++   A N L          + + +
Sbjct: 94  SKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRD 153

Query: 143 VISWTTMCTGLERNAMTKL--AREYFVQMPN-KDIVAWNAMITAYVDAGNMAQASELFNL 199
             +++ +   L  + +T L     + V++ + +D    NA+I AY   G    AS++F  
Sbjct: 154 SFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEE 213

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           MP+R+  +WN+ +    R G   +A ++ +       MP++ T  S  T  +G       
Sbjct: 214 MPRRDTVSWNSAMAAMVRQGEVASARRMFDE------MPDKDT-VSWNTVLDGY------ 260

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-------DVNSARLAFERLEAKDVVSWT 312
                + G  ++    ++C        W   +       D+  AR+ F+++  K++V+WT
Sbjct: 261 ----TKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWT 316

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM-SR 371
            M+ A + +G   +  RLF +M ++  + D    V +L+ C+ +G +  G++    + +R
Sbjct: 317 IMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTR 376

Query: 372 AYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
             G   R+ H  + + D+  + G V  A  V       E+D V    ++G   +HG    
Sbjct: 377 QLG---RSTHVCNAMIDMFCKCGCVNRADYVFDTEIA-EKDSVSWNTIIGGFAMHGHGDK 432

Query: 431 A-DYIGE-RLIELQPSS-SGAYVLSANVHAARGEWDEFAQVRKKMER 474
           A D+  + +L   +P + +   VLSA  H   G  +E  Q    MER
Sbjct: 433 ALDFFAQMKLQGFRPDAVTMINVLSACTHM--GFVEEGRQHFSNMER 477


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 251/478 (52%), Gaps = 30/478 (6%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++V  + +ID Y K G +D A++VF  + E +  SW SLI+G       ++   LF
Sbjct: 308 EHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILF 367

Query: 113 DRM---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM----------- 158
           ++M    + L   +   T++  C+     +  E++   T+ +G+  +A            
Sbjct: 368 NQMRRSSVVLDEFI-LPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAK 426

Query: 159 ---TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
              T  A   F  MP ++ ++W AMITA+  +G++ +A   F++MP+RN+ TWN+M+  Y
Sbjct: 427 CGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTY 486

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET 272
            +NG     +KL   M  +   P+  T T+ + +C  +    L   +   A + G     
Sbjct: 487 VQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNV 546

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S+       Y          +  A+  F+ ++ KD++SW AM+ A++ +G G +V   F 
Sbjct: 547 SVANSIVTMYSRCGL-----IKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFE 601

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            MLK+  KP+ I++V VLS CSH GLV +G+  F+ M+R +G  P  EH+SC+ D+L RA
Sbjct: 602 DMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRA 661

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G +++A  ++  M P + +  V  ALLG+CR+H D+R+A+   ++L+EL    S  YVL 
Sbjct: 662 GLLEQAKDLIEGM-PFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLL 720

Query: 453 ANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           +N+++  GE D  A +RK M+ + ++     S IEV  + H     + E  +  +KEV
Sbjct: 721 SNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVF--TVDETSHPQIKEV 776



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 177/443 (39%), Gaps = 58/443 (13%)

Query: 48  FRAMPESQ-RNIVAESAMIDGYVKAGRVDEARKVFDE--IYEGNVYSWTSLISGYFKARQ 104
           F+   E+  RNI   + MI   V + R+ +A K+FDE  +   +  SWT++ISGY    Q
Sbjct: 63  FQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGY---SQ 119

Query: 105 VDEGRRLFDRMPLKLKNV---------VSWTTVVLGCAHNG----------LIAKL---- 141
                R F+   L +++           S+T+V+  C   G          L++KL    
Sbjct: 120 NGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGM 179

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E     ++     +     LA   F  +    +  WN+MI  Y       +A ++FN MP
Sbjct: 180 ETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMP 239

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE-NMLAH 260
           +R+  +WN +I  ++++G     + +   M    F PN  T  S+L++C    +    AH
Sbjct: 240 ERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAH 299

Query: 261 ALAIRLGFEQETSLTY---------KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
             A  L  E    L +         KC C          LD+  A+  F+ L   D +SW
Sbjct: 300 LHARILRMEHSLDLVFGNGLIDMYAKCGC----------LDL--AKRVFKSLREHDHISW 347

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            ++I    + G G     LF +M +S    DE     +L  CS       G        +
Sbjct: 348 NSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIK 407

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           + G    A   + +  +  + G   +A  V   MP   R+ +   A++ A    GD+  A
Sbjct: 408 S-GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPL--RNTISWTAMITAFSRSGDIGKA 464

Query: 432 ----DYIGERLIELQPSSSGAYV 450
               D + ER I    S    YV
Sbjct: 465 RGYFDMMPERNIVTWNSMLSTYV 487



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 133/304 (43%), Gaps = 50/304 (16%)

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR--NVWTWNAMIDR 214
            +T  A + F +  +++I  WN MI A V +  M+ A +LF+ MP R  +  +W  MI  
Sbjct: 57  GLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISG 116

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNET----TCTSILTSCEGMLENMLA---HALAIRLG 267
           Y++NG    + +  +LM +      +     + TS++ +C  + ++ LA   HAL  +LG
Sbjct: 117 YSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLG 176

Query: 268 FEQETSLTYKCTCHY-----------VFWD--------WGFQLDVNS-------ARLAFE 301
           F  ET +       Y           VF+D        W   +   S       A   F 
Sbjct: 177 FGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFN 236

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           R+  +D VSW  +I  +S HG G Q   +F  M   G  P+ +T+  VLS C+    ++ 
Sbjct: 237 RMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKW 296

Query: 362 GRKTFNLMSRAYGFKPRAEHY------SCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           G    +L +R      R EH       + L D+  + G +  A RV   +  H  DH+  
Sbjct: 297 GA---HLHARIL----RMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREH--DHISW 347

Query: 416 GALL 419
            +L+
Sbjct: 348 NSLI 351



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   +A  +F  M   + +S  +MIT F R+ D+ KA   F  MPE  RNIV  ++M+  
Sbjct: 428 GDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPE--RNIVTWNSMLST 485

Query: 68  YVKAGRVDEARKVFDEIYEGNVY-SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           YV+ G  +E  K++  +    V   W +  +           R   D   +KL   V   
Sbjct: 486 YVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSI---------RACADLAIVKLGMQVVTH 536

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
               G + N  +A        ++ T   R  + K A+  F  + +KD+++WNAM+ A+  
Sbjct: 537 ATKFGLSLNVSVAN-------SIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQ 589

Query: 187 AG 188
            G
Sbjct: 590 NG 591



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 113/276 (40%), Gaps = 66/276 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           + F  +G + +A   FD M + + V+  SM++ +++N    +   L+ +M  +       
Sbjct: 453 TAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWI 512

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                           N+   ++++  Y + G + EA+  FD I
Sbjct: 513 TFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSI 572

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIA 139
            + ++ SW ++++ +    Q   G ++ D     LK     N +S+ +V+ GC+H GL+A
Sbjct: 573 DDKDLISWNAMLAAF---AQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVA 629

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           +              ++    + R + +   N+    ++ M+     AG + QA +L   
Sbjct: 630 E-------------GKHYFDSMTRVFGISPTNEH---FSCMVDLLGRAGLLEQAKDLIEG 673

Query: 200 MP-QRNVWTWNAMID----RYARNGPEGAAMKLLNL 230
           MP + N   W+A++      +     E AA KL+ L
Sbjct: 674 MPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMEL 709


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 202/351 (57%), Gaps = 9/351 (2%)

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           K +V++W+++  G  R    K+AR+ F +MP +D+V+WN MIT YV  G M  A  LF+ 
Sbjct: 171 KGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDE 230

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN- 256
            P ++V +WNAMI  Y   G    A++L N M ++   P+E T  S+L++C   G LEN 
Sbjct: 231 APVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENG 290

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              HA  + +   + ++L        ++   G   ++  +   F  +  KDV+SW ++I+
Sbjct: 291 KKVHAKVMEISMGKLSTLLGNALID-MYAKCG---NIKESLDVFWSITDKDVISWNSVIV 346

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + HGHG +   LF  M ++   P+EITFVGVL  CSHAG +++G K F+LMS  Y  +
Sbjct: 347 GMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIE 406

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
           P   H  C+ D+L RAG +KEA + +  M   E + ++   LL AC++HGDV +A    E
Sbjct: 407 PNIRHCGCMVDMLGRAGLLKEAAKFIDSMKI-EPNAIIWRTLLAACKVHGDVELAKVANE 465

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           +L  ++   SG YVL +N++A+RGEWD   +VRK M+   V K+   S +E
Sbjct: 466 KLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 20/245 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  AT LFD+  + D V+ +S+I  + R  DL  A  LF  MPE  R++V+ + MI G
Sbjct: 157 GDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPE--RDLVSWNVMITG 214

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YVK G ++ AR +FDE    +V SW ++I+GY       +   LF+ M            
Sbjct: 215 YVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEM------------ 262

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
               C       ++ ++S  + C  L    N     A+   + M     +  NA+I  Y 
Sbjct: 263 ----CRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYA 318

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             GN+ ++ ++F  +  ++V +WN++I   A +G    ++ L  +M +++  PNE T   
Sbjct: 319 KCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVG 378

Query: 246 ILTSC 250
           +L +C
Sbjct: 379 VLVAC 383



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 107/262 (40%), Gaps = 33/262 (12%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF  +PQ + + +N MI   +++     A+ L   M +     +  T   +L +C  
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120

Query: 253 ML---ENMLAHALAIRLGFE-----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
           +         H + +RLGF      + T L +   C           D+N A   F+   
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCG----------DLNVATSLFDDSC 170

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
             DVV+W+++I  Y+  G      +LF  M     + D +++  +++     G +E  R 
Sbjct: 171 KGDVVAWSSLIAGYARRGDLKVARKLFNEM----PERDLVSWNVMITGYVKQGEMESARM 226

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRA--GQVKEAMRVVSKMPPHE--RDHVVLGALLG 420
            F+         P  +  S  A I      G  K+A+ + ++M       D V L +LL 
Sbjct: 227 LFDE-------APVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLS 279

Query: 421 ACRLHGDVRMADYIGERLIELQ 442
           AC   GD+     +  +++E+ 
Sbjct: 280 ACADLGDLENGKKVHAKVMEIS 301


>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
 gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
          Length = 529

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 225/431 (52%), Gaps = 49/431 (11%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           +AG +  AR +F+ + E +V SW S+++G  KA  +DE   LFD+MP    N  SW  +V
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPET--NAASWNALV 191

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
            G    G +A+                     A+E F +MP ++ V+W  MI+ Y  AG+
Sbjct: 192 SGFMAQGHLAQ---------------------AQELFERMPIRNNVSWITMISGYAKAGD 230

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSIL 247
           +  A+ LF+ M  ++++ WNAMI  YA+NG    A+ + N M +      PNE T +S++
Sbjct: 231 VQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVI 290

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKC--------TCHYVFWDWGFQLDVNSARLA 299
           ++C  + +        +R G   E+ + Y          T     +    Q+D   A   
Sbjct: 291 SACSQLGD--------LRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMD--RAFDL 340

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  L ++DVVS++AMI+    HG   +   LF  M K+   P+ +TFVG+LS  SHAGL+
Sbjct: 341 FRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHAGLL 400

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGA 417
           E+ R  F  MS  Y   P  EHY+ + DIL R G+++EA +++ ++P  PH     V GA
Sbjct: 401 EEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIPVCPHAS---VWGA 457

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LL ACRLH ++ + +    +  EL+P  SG Y+L  N++A   +WD+   +RK M ER +
Sbjct: 458 LLLACRLHNNIELGEVAASKCFELEPKESGYYILLGNIYAQAKKWDKVKGLRKMMAERGL 517

Query: 477 KKVASFSQIEV 487
            K    S + V
Sbjct: 518 SKTPGSSWVHV 528



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 27/256 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G + EA +LFD+M + +  S  ++++ F+    L +A+ LF  MP   RN V+   MI 
Sbjct: 166 AGHLDEAIELFDQMPETNAASWNALVSGFMAQGHLAQAQELFERMP--IRNNVSWITMIS 223

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-----LKN 121
           GY KAG V  A  +FD +   ++Y+W ++IS Y +     E   +F+RM LK       N
Sbjct: 224 GYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRM-LKPHIWVAPN 282

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             ++++V+  C+  G    L    W     G             +V +   D +   A+I
Sbjct: 283 EKTFSSVISACSQLG---DLRFGLWVESFMG-------------YVGVHLDDHLR-TALI 325

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y  +G M +A +LF  +  R+V +++AMI     +G    A+ L   M ++R  PN  
Sbjct: 326 DLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAV 385

Query: 242 TCTSILT--SCEGMLE 255
           T   +L+  S  G+LE
Sbjct: 386 TFVGLLSAYSHAGLLE 401


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 223/442 (50%), Gaps = 59/442 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  E+ +I+ Y ++G  + ARKV D +   +  SW SL+S Y     V+E R LFD M 
Sbjct: 144 DVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEM- 202

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            + +NV SW  ++ G A  GL+                     K ARE F  MP KD+V+
Sbjct: 203 -EERNVESWNFMISGYAAAGLV---------------------KEAREVFDSMPVKDVVS 240

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WNAM+TAY   G   +  E+FN+           M+D  A   P+G    L+N++     
Sbjct: 241 WNAMVTAYAHVGCYNEVLEVFNM-----------MLDDSAER-PDG--FTLVNVL----- 281

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
               + C S+ +  +G   ++      I + GF     +     C            ++ 
Sbjct: 282 ----SACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCG----------KIDK 327

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F     +DV +W ++I   S HG G     +F+ M+  G KP+ ITF+GVLS C+H
Sbjct: 328 ALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 387

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            GL+++ RK F +M+  YG +P  EHY C+ D+L R G+ +EA  +V+++P  E   ++L
Sbjct: 388 VGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEAS-ILL 446

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-R 474
            +LLGAC+  G +  A+ I  RL+E  P  S  YV  +N++A+ G WDE  +VR KM   
Sbjct: 447 ESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAE 506

Query: 475 RVKKVASFSQIEVKGKDHTLLA 496
           RVKK    S IEV G  H  LA
Sbjct: 507 RVKKNPGCSMIEVDGVVHEFLA 528



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 27/248 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           ++I V+ R+     A  +   MP   R+ V+ ++++  Y+  G V+EAR +FDE+ E NV
Sbjct: 150 TLINVYGRSGYFEIARKVLDRMP--VRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNV 207

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV----- 143
            SW  +ISGY  A  V E R +FD MP  +K+VVSW  +V   AH G   + LEV     
Sbjct: 208 ESWNFMISGYAAAGLVKEAREVFDSMP--VKDVVSWNAMVTAYAHVGCYNEVLEVFNMML 265

Query: 144 ------------ISWTTMCTGLERNAMTKLAREYFVQ--MPNKDIVAWNAMITAYVDAGN 189
                       ++  + C  L   +  +    Y  +  +  +  VA  A++  Y   G 
Sbjct: 266 DDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVA-TALVDMYSKCGK 324

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           + +A E+F    +R+V TWN++I   + +G    A+++ + M    F PN  T   +L++
Sbjct: 325 IDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSA 384

Query: 250 CE--GMLE 255
           C   G+L+
Sbjct: 385 CNHVGLLD 392



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 12/232 (5%)

Query: 239 NETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           + TT   IL+  E    +LE   AHA  ++ G   +T    K               V+ 
Sbjct: 5   SSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPE--PKTVSY 62

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A     R+E+ +  +  ++I AY+N         +F  ML     PD+ +F  VL  C+ 
Sbjct: 63  AHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAA 122

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
               E+GR+   L  ++          + L ++  R+G  + A +V+ +MP   RD V  
Sbjct: 123 FCGFEEGRQIHGLFMKS-DLVTDVFVENTLINVYGRSGYFEIARKVLDRMPV--RDAVSW 179

Query: 416 GALLGACRLHGDVRMA----DYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            +LL A    G V  A    D + ER +E        Y  +  V  AR  +D
Sbjct: 180 NSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFD 231


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/523 (29%), Positives = 259/523 (49%), Gaps = 52/523 (9%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVA 60
            G   EA  L+ E      QPD  +  S+I       D   A+++   + +     ++  
Sbjct: 93  NGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR-------RLFD 113
            +A+ID Y +   +D+ARKVF+E+   +V SW SLISGY      +E         +LF 
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFM 212

Query: 114 RMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL------ 161
            M  + K ++++ T+++  C H G +   + +    + +G E      N +  +      
Sbjct: 213 EMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 272

Query: 162 ---AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              ++E F  M  KD V+WN+MI  Y+  G M  + ++F  M  R++ TWN +I     +
Sbjct: 273 LLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHS 332

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQET--- 272
                 +++++ M      P+  T  SIL  C  +    +    H    +LG E +    
Sbjct: 333 EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVG 392

Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                +  KC              + ++   F+ ++ KDVV+WTA+I A   +G G +  
Sbjct: 393 NVLIEMYSKCG------------SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 440

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
           R F  M  +G  PD + FV ++  CSH+GLVE+G   F+ M + Y  +PR EHY+C+ D+
Sbjct: 441 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 500

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L R+  + +A   +  MP  + D  + GALL ACR+ GD  +A+ + ER+IEL P  +G 
Sbjct: 501 LSRSALLDKAEDFILSMPL-KPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 559

Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           YVL +N++AA G+WD+   +RK ++ R +KK    S +E++ K
Sbjct: 560 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNK 602



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 167/391 (42%), Gaps = 59/391 (15%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA------------KLE 142
           LI+ Y   R       +F R+     NV  W +++    HNGL +            +L+
Sbjct: 54  LIAKYAHFRDPTSSFSVF-RLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQ 112

Query: 143 VISWT-----TMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASEL 196
             ++T       C GL    M K   +  + M    D+   NA+I  Y    ++ +A ++
Sbjct: 113 PDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKV 172

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKL------LNLMFQSRFMPNETTCTSILTSC 250
           F  MP R+V +WN++I  Y  NG    A+++      L +   ++F P+  T TSIL +C
Sbjct: 173 FEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQAC 232

Query: 251 EGMLENM----LAHALAIRLGFEQETS-------LTYKC-------------TCH-YVFW 285
            G L ++      H   I  G+E +T+       +  KC              C   V W
Sbjct: 233 -GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291

Query: 286 DWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           +    + + + ++      FE ++A+D+++W  +I +  +        R+ +RM   G  
Sbjct: 292 NSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 351

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD  T + +L  CS      +G++    + +  G +      + L ++  + G ++ + +
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQ 410

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           V   M    +D V   AL+ AC ++G+ + A
Sbjct: 411 VFKLMKT--KDVVTWTALISACGMYGEGKKA 439


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 265/510 (51%), Gaps = 38/510 (7%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
           +S   PV+  S++ ++ +  D   A A+F  M    R+  + +AM+  Y   GR+D A  
Sbjct: 194 LSSCVPVA-NSVLYMYGKCGDAETARAVFERM--KVRSESSWNAMVSLYTHQGRMDLALS 250

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNG 136
           +F+ + E ++ SW ++I+GY +    D   + F RM        +  + T+V+  CA+  
Sbjct: 251 MFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLR 310

Query: 137 LIAKLEVISWTTMCTGLERNA------MTKLAREYFVQMPNK----------DIVAWNAM 180
           ++   + +    + TG+  ++      ++  A+   V+   +          +++++ A+
Sbjct: 311 MLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTAL 370

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  YV  G+  QA E+F++M  R+V  W AMI  Y +NG    AM+L   M +S   PN 
Sbjct: 371 LEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNS 430

Query: 241 TTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  ++L++C  +         H  AIR   EQ  S++      Y          V  AR
Sbjct: 431 HTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVY-----ARSGSVPLAR 485

Query: 298 LAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
             F+++   K+ V+WT+MI+A + HG G Q   LF  ML+ G KPD +T++GV S C+HA
Sbjct: 486 RVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHA 545

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G ++KG++ +  M   +G  P   HY+C+ D+L RAG + EA   + +MP    D VV G
Sbjct: 546 GFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAP-DTVVWG 604

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERR 475
           +LL ACR+  +  +A+   E+L+ + P +SGAY   ANV++A G W++ A++ K + ++ 
Sbjct: 605 SLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKA 664

Query: 476 VKKVASFSQIEVKGKDHT-----LLAPMRE 500
           VKK   FS   V+ K H      +L P R+
Sbjct: 665 VKKETGFSWTHVQSKVHVFGADDVLHPQRD 694



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 197/449 (43%), Gaps = 61/449 (13%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +A  LF  +P ++RN    ++++  Y K+GR+ +AR VF ++ E +  SWT ++ G  +A
Sbjct: 82  EARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRA 141

Query: 103 RQVDEGRRLFDRM--------PLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTTMC 150
            +  +  + F  M           L NV+S         +G   +  + KL + S   + 
Sbjct: 142 GRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVA 201

Query: 151 TGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
             +     +    + AR  F +M  +   +WNAM++ Y   G M  A  +F  M +R++ 
Sbjct: 202 NSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIV 261

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLA-----H 260
           +WNA+I  Y +NG +  A+K  + M  +  M P+E T TS+L++C  +   ML      H
Sbjct: 262 SWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANL--RMLKMGKQMH 319

Query: 261 ALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLDVN---------------- 294
           +  +R G    + +       Y             D     D+N                
Sbjct: 320 SYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGD 379

Query: 295 --SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              AR  F+ +  +DV++WTAMI+ Y  +G   +   LF  M++SG +P+  T   VLS 
Sbjct: 380 TKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSA 439

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+    +  G++      R+   +      + +  +  R+G V  A RV  ++    ++ 
Sbjct: 440 CASLAYLGYGKQIHCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQI-CWRKET 497

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIEL 441
           V   +++ A   HG       +GE+ I L
Sbjct: 498 VTWTSMIVALAQHG-------LGEQAIVL 519



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 118/254 (46%), Gaps = 33/254 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----PESQRNIVA--- 60
           G  K+A ++FD M+  D ++  +MI  + +N    +A  LFR+M    PE   + +A   
Sbjct: 378 GDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVL 437

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +     Y+  G+    R +   + E +V    ++I+ Y ++  V   RR+FD++  + K
Sbjct: 438 SACASLAYLGYGKQIHCRAI-RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWR-K 495

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL--------------AREYF 166
             V+WT++++  A +GL  +  V+    +  G++ + +T +               + Y+
Sbjct: 496 ETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYY 555

Query: 167 VQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARN 218
            QM N+     ++  +  M+     AG + +A E    MP   +   W +++   R  +N
Sbjct: 556 EQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 615

Query: 219 G--PEGAAMKLLNL 230
               E AA KLL++
Sbjct: 616 ADLAELAAEKLLSI 629


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 243/492 (49%), Gaps = 58/492 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++I  Y   G +D A KVF  I E +V SW S+I+G+ +    D+   LF +M 
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN----------AMTKL--- 161
            +    + V+   V+  CA    I  LE      +C+ +E N          AM  +   
Sbjct: 227 SEDVKASHVTMVGVLSACAK---IRDLEF--GRRVCSYIEENRVNVNLTLANAMLDMYTK 281

Query: 162 ------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                 A+  F  M  KD V W  M+  Y  + +   A E+ N MP++++  WNA+I  Y
Sbjct: 282 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAY 341

Query: 216 ARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLG 267
            +NG P  A +    L  Q     N+ T  S L++C   G LE     +       I++ 
Sbjct: 342 EQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMN 401

Query: 268 FEQETSLTY---KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           F   ++L +   KC             D+  AR  F  +E +DV  W+AMI   + HG G
Sbjct: 402 FYVTSALIHMYSKCG------------DLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCG 449

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   +F +M ++  KP+ +TF  V   CSH GLV++    F  M  +YG  P  +HY+C
Sbjct: 450 SEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYAC 509

Query: 385 LADILRRAGQVKEAMRVVSKMP-PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           + D+L R+G +++A++ +  MP P      V GALLGAC++H ++ +A+    RL+EL+P
Sbjct: 510 IVDVLGRSGYLEKAVKFIEAMPIPPSTS--VWGALLGACKIHANLSLAEMACTRLLELEP 567

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----P 497
            + GA+VL +N++A  G+WD  +++RK M    +KK    S IE+ G  H  L+     P
Sbjct: 568 RNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 627

Query: 498 MREMGYVVLKEV 509
           M E  Y  L EV
Sbjct: 628 MSEKVYGKLHEV 639



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 131/303 (43%), Gaps = 59/303 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP----------- 52
           F C G +  A K+F  + + D VS  SMI  F++     KA  LF+ M            
Sbjct: 179 FSC-GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 237

Query: 53  -----------------------ESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                  E  R   N+   +AM+D Y K G +++A+++FD + E
Sbjct: 238 VGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 297

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------- 136
            +  +WT+++ GY  +   +  R + + MP   K++V+W  ++     NG          
Sbjct: 298 KDNVTWTTMLDGYAISEDYEAAREVLNAMP--KKDIVAWNALISAYEQNGKPNEALLVFH 355

Query: 137 --------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDA 187
                    + ++ ++S  + C  +    + +    Y  +   K +    +A+I  Y   
Sbjct: 356 ELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKC 415

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++ +A E+FN + +R+V+ W+AMI   A +G    A+ +   M ++   PN  T T++ 
Sbjct: 416 GDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVF 475

Query: 248 TSC 250
            +C
Sbjct: 476 CAC 478



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 15/257 (5%)

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM--KLLNLM-FQSRFM 237
           I A     ++  A ++F+ +PQ N +TWN +I  YA +GP+        L+++  +S+  
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA-SGPDPVCSIWAFLDMVSSESQCY 130

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN+ T   ++ +   +    L    H +AI+     +  +       + ++  G   D++
Sbjct: 131 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLI--HCYFSCG---DLD 185

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           SA   F  ++ KDVVSW +MI  +   G   +   LF +M     K   +T VGVLS C+
Sbjct: 186 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 245

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               +E GR+  + +             + + D+  + G +++A R+   M   E+D+V 
Sbjct: 246 KIRDLEFGRRVCSYIEENR-VNVNLTLANAMLDMYTKCGSIEDAKRLFDAM--EEKDNVT 302

Query: 415 LGALLGACRLHGDVRMA 431
              +L    +  D   A
Sbjct: 303 WTTMLDGYAISEDYEAA 319


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 217/436 (49%), Gaps = 30/436 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + +I  Y + G    AR VFD   E ++ SW S++ GY    +++  + +FD MP
Sbjct: 144 DVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP 203

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIV 175
            +                       +V+SW+ M  G  ++      AR +F  MP +D+V
Sbjct: 204 ER-----------------------DVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLV 240

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +WN+MI  Y   G M  A E+F+ M Q+NV +W+ MID YA++     A+ L   M    
Sbjct: 241 SWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQG 300

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV-N 294
             P+  +    +++C  +    L     I L + +   +           D   +    +
Sbjct: 301 IKPDRVSVVGAVSACSQL--GALDQGRWIHL-YMKRNRMLLDIVVQTALVDMYLKCGSRD 357

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR  F  +  ++VVSW  MI+    +G G +    F +M       D++ F+GVL  CS
Sbjct: 358 EARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACS 417

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HA LV +G   FN M   Y  +P+ EHY CL D+L RAGQ+ +   ++  M P + +  +
Sbjct: 418 HANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSM-PMKPNAAL 476

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            G+LL ACR+H +V +A+ + ERL EL+   SG YVL +N++A  G W+   ++RK M E
Sbjct: 477 WGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKE 536

Query: 474 RRVKKVASFSQIEVKG 489
           R++KK    S IEV G
Sbjct: 537 RKMKKDIGRSVIEVDG 552


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 166/576 (28%), Positives = 280/576 (48%), Gaps = 114/576 (19%)

Query: 8   GKVKEATKLFDEMSQ---PDPVSCASMITVFLRN-----------------HDLPKAE-- 45
           G ++EA+ +FDE++Q    D +S  S+++  +++                 H+ P  E  
Sbjct: 211 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 270

Query: 46  ------------ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVF 81
                          +A+P+++             ++   +A+ID Y K G ++ A KVF
Sbjct: 271 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 330

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLG----- 131
           + +   +V SW ++++GY ++   +    LF  M     PL   +VV+WT V+ G     
Sbjct: 331 NMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPL---DVVTWTAVIAGYSQRG 387

Query: 132 CAHNGL------------IAKLEVISWTTMCTGLE-------------RNAMTKLAREYF 166
           C+H  L               + +IS  + C  L              +N +  L  ++ 
Sbjct: 388 CSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG 447

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAA 224
            +  ++D++ +NA+I  Y    +   A  +F+ +P  +RNV TW  MI  +A+ G    A
Sbjct: 448 GE--DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 505

Query: 225 MKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLGFE----------QET 272
           +KL   M    +   PN  T + IL +C        AH  AIR+G +           E+
Sbjct: 506 LKLFVEMISEPYGVAPNAYTISCILMAC--------AHLAAIRIGKQIHAYVLRHHRYES 557

Query: 273 SLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
           S  +   C   ++   G   DV++AR  F+ +  K  +SWT+M+  Y  HG G +   +F
Sbjct: 558 SAYFVANCLIDMYSKCG---DVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 614

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M K+G  PD+ITF+ VL  CSH G+V++G   F+ MS  YG  PRAEHY+C  D+L R
Sbjct: 615 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 674

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           +G++ +A R V  M P E   VV  ALL ACR+H +V +A++   +L+E+   + G+Y L
Sbjct: 675 SGRLDKAWRTVKDM-PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 733

Query: 452 SANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
            +N++A  G W + A++R  M++  +KK    S ++
Sbjct: 734 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 769



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 171/397 (43%), Gaps = 50/397 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRL 111
           + N+   +A++  Y + G ++EA  +FDEI +    +V SW S++S + K+        L
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 253

Query: 112 FDRMPLKL--------KNVVSWTTVVLGCA-----------HNGLIAK---LEVISWTTM 149
           F +M L +         +++S   ++  C            H   I      +V     +
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 313

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN----V 205
                +  + + A + F  M  KD+V+WNAM+  Y  +GN   A ELF  M + N    V
Sbjct: 314 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHAL 262
            TW A+I  Y++ G    A+ L   M  S  +PN  T  S+L++C  +    +    HA 
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433

Query: 263 AIR---------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSW 311
           +++          G E E  + Y            F+    +AR  F+   LE ++VV+W
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK----AARSIFDDIPLEERNVVTW 489

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           T MI  ++ +G      +LF  M+    G  P+  T   +L  C+H   +  G++    +
Sbjct: 490 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 549

Query: 370 SRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            R + ++  A   + CL D+  + G V  A  V   M
Sbjct: 550 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 586



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A L  ER+     V W  +I  +   G       +  RML++GT+PD  T   VL  C  
Sbjct: 115 ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGE 174

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
                 G   F+ +    GF+      + L  +  R G ++EA  +  ++     D V+
Sbjct: 175 LPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 243/506 (48%), Gaps = 54/506 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +   MP+  ++ +  + M+ GYV+ G V  AR VF+E+       W ++ISGY  + 
Sbjct: 216 ARKVLDEMPD--KDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSG 273

Query: 104 QVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAHNGLIAKLEVISW--------------- 146
            V E   LF RM L+   +   ++T+V+  CA+ G  A  + +                 
Sbjct: 274 MVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAAL 333

Query: 147 ---TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                + T   +     +AR  F  M +KD+V+WN +++ YV++  + +A E+F  MP +
Sbjct: 334 PVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK 393

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LA 259
           N  +W  M+  Y   G    A+KL N M      P + T    +++C G L ++      
Sbjct: 394 NELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISAC-GELGSLKHGKQL 452

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           H   ++LGFE   S        Y          V  A L F  +   D VSW AMI A  
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCG-----AVKEANLMFLVMPNIDSVSWNAMISALG 507

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HGHG +   LF RM+  G  PD I+F+ VL+ C+H+GLV++G + F  M R +G  P  
Sbjct: 508 QHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGE 567

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +HY+ L D+L RAG++ EA  ++  M P E    +  A+L  CR  GD+ +  +  ++L 
Sbjct: 568 DHYTRLIDLLGRAGRIGEARDLIKTM-PFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL--- 495
           ++ P   G Y+L +N ++A G W + A+VRK M +R VKK    S IE   K H  +   
Sbjct: 627 KMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGD 686

Query: 496 -----------------APMREMGYV 504
                            A MR++GYV
Sbjct: 687 TKHPEAHKVYKFLEMVGARMRKLGYV 712



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 217/519 (41%), Gaps = 76/519 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +  +G +  A  LF   + P PV+  S++  +     LP A + F A+P+++R+ V  +A
Sbjct: 69  YTLSGDLPAAATLFR--ADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNA 126

Query: 64  MIDGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMP-L 117
           +I  Y +A     A  VF  +        + YS+T+L+S                 +P +
Sbjct: 127 VISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAA-------------GHLPNI 173

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM-CTGLERNAMTKLAREYFVQMPNKDIVA 176
            +++       VL     G+++    +    M C  LE    T+ AR+   +MP+KD + 
Sbjct: 174 SVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE---ATRDARKVLDEMPDKDALT 230

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W  M+  YV  G++  A  +F  +  +    WNAMI  Y  +G    A +L   M   R 
Sbjct: 231 WTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERV 290

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAI-----RL--GFEQETSLTYKCTCHYVFWDWGF 289
             +E T TS+L++C        AH  ++     RL   F  E +L        ++   G 
Sbjct: 291 PLDEFTFTSVLSACAN--AGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCG- 347

Query: 290 QLDVNSARLAFERLEAKDVVSWTA-------------------------------MILAY 318
             ++  AR  F+ +++KDVVSW                                 M+  Y
Sbjct: 348 --NIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY 405

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
            + G      +LF RM     KP + T+ G +S C   G ++ G++    + +  GF+  
Sbjct: 406 VHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQ-LGFEGS 464

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               + L  +  R G VKEA  +   MP    D V   A++ A   HG  R A  + +R+
Sbjct: 465 NSAGNALITMYARCGAVKEANLMFLVMP--NIDSVSWNAMISALGQHGHGREALELFDRM 522

Query: 439 IE--LQPSS-SGAYVLSANVHAARGEWDEFAQVRKKMER 474
           +   + P   S   VL+A  H+  G  DE  Q  + M+R
Sbjct: 523 VAEGIYPDRISFLTVLTACNHS--GLVDEGFQYFESMKR 559


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 166/576 (28%), Positives = 280/576 (48%), Gaps = 114/576 (19%)

Query: 8   GKVKEATKLFDEMSQ---PDPVSCASMITVFLRN-----------------HDLPKAE-- 45
           G ++EA+ +FDE++Q    D +S  S+++  +++                 H+ P  E  
Sbjct: 204 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 263

Query: 46  ------------ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVF 81
                          +A+P+++             ++   +A+ID Y K G ++ A KVF
Sbjct: 264 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 323

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLG----- 131
           + +   +V SW ++++GY ++   +    LF  M     PL   +VV+WT V+ G     
Sbjct: 324 NMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPL---DVVTWTAVIAGYSQRG 380

Query: 132 CAHNGL------------IAKLEVISWTTMCTGLE-------------RNAMTKLAREYF 166
           C+H  L               + +IS  + C  L              +N +  L  ++ 
Sbjct: 381 CSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG 440

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAA 224
            +  ++D++ +NA+I  Y    +   A  +F+ +P  +RNV TW  MI  +A+ G    A
Sbjct: 441 GE--DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 498

Query: 225 MKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLGFE----------QET 272
           +KL   M    +   PN  T + IL +C        AH  AIR+G +           E+
Sbjct: 499 LKLFVEMISEPYGVAPNAYTISCILMAC--------AHLAAIRIGKQIHAYVLRHHRYES 550

Query: 273 SLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
           S  +   C   ++   G   DV++AR  F+ +  K  +SWT+M+  Y  HG G +   +F
Sbjct: 551 SAYFVANCLIDMYSKCG---DVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 607

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M K+G  PD+ITF+ VL  CSH G+V++G   F+ MS  YG  PRAEHY+C  D+L R
Sbjct: 608 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 667

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           +G++ +A R V  M P E   VV  ALL ACR+H +V +A++   +L+E+   + G+Y L
Sbjct: 668 SGRLDKAWRTVKDM-PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 726

Query: 452 SANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
            +N++A  G W + A++R  M++  +KK    S ++
Sbjct: 727 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 762



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 171/397 (43%), Gaps = 50/397 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRL 111
           + N+   +A++  Y + G ++EA  +FDEI +    +V SW S++S + K+        L
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 246

Query: 112 FDRMPLKL--------KNVVSWTTVVLGCA-----------HNGLIAK---LEVISWTTM 149
           F +M L +         +++S   ++  C            H   I      +V     +
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 306

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN----V 205
                +  + + A + F  M  KD+V+WNAM+  Y  +GN   A ELF  M + N    V
Sbjct: 307 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHAL 262
            TW A+I  Y++ G    A+ L   M  S  +PN  T  S+L++C  +    +    HA 
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426

Query: 263 AIR---------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSW 311
           +++          G E E  + Y            F+    +AR  F+   LE ++VV+W
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK----AARSIFDDIPLEERNVVTW 482

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           T MI  ++ +G      +LF  M+    G  P+  T   +L  C+H   +  G++    +
Sbjct: 483 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 542

Query: 370 SRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            R + ++  A   + CL D+  + G V  A  V   M
Sbjct: 543 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 579



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A L  ER+     V W  +I  +   G       +  RML++GT+PD  T   VL  C  
Sbjct: 108 ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGE 167

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
                 G   F+ +    GF+      + L  +  R G ++EA  +  ++     D V+
Sbjct: 168 LPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 234/463 (50%), Gaps = 38/463 (8%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++  ++ ++  Y++ G +  AR++FD +   +  S+ S+I GY K   V   R LF
Sbjct: 208 EIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELF 267

Query: 113 DRMPLKLKNVVSWTTVVLGCAHN--GL---------IAKLEVISWTTMCTGLERNAMTKL 161
           D MP++ KN++SW +++ G A +  GL         + K ++ISW +M  G  +    + 
Sbjct: 268 DVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMEN 327

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A   F  MP +D+V+W  M+  Y   G +  A  LF+ MP+R+V + NAM+  Y +NG  
Sbjct: 328 AHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXL 387

Query: 222 GAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
             A+   + M   +   P   T    L++        L H       F++  +L      
Sbjct: 388 MEALXFFHDMLSXKELFPXNATLLITLSAIA-----QLGH-------FDEGVAL------ 429

Query: 281 HYVFWDWGFQLDVNSARLAFE------RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
           H    D GF L         +       ++   +  W A+J   + HG G   F LF  M
Sbjct: 430 HCYIEDNGFSLSEKLGXALIDMYAKCGSIDNALIDHWNAIJXGLAIHGLGEVAFELFMEM 489

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            K   KPB+ITF+GVL+ C+HAGLV++G   F LM   +  +P+ +HY C+ DIL RAG 
Sbjct: 490 EKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGH 549

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           V+E  + V KMP    D VV   LL ACR H +  + + + + LI +   +  +YVL +N
Sbjct: 550 VEEXKKFVEKMPIEPND-VVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSN 608

Query: 455 VHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           ++A  G W++  ++R  M++R +KK+   SQIE++G  H    
Sbjct: 609 IYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFV 651



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 28/210 (13%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GC G    A +LFD M   D VS  SMI  ++++  +  A  LF  MP  Q+N+++ ++M
Sbjct: 227 GCLGI---ARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSM 283

Query: 65  IDGYVKAGR-VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           I GY ++   +  A ++F+E+ + ++ SW S+I G  K  +++    LF+ MP       
Sbjct: 284 ISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMP------- 336

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                           K +V+SW  M  G  +     +AR  F +MP +D+++ NAM+  
Sbjct: 337 ----------------KRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAG 380

Query: 184 YVDAGNMAQASELF-NLMPQRNVWTWNAMI 212
           YV  G + +A   F +++  + ++  NA +
Sbjct: 381 YVQNGXLMEALXFFHDMLSXKELFPXNATL 410



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 47/298 (15%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENML 258
           Q N + WNA+I  ++       A  + NLM ++    ++ + + +L +C   G++ E M 
Sbjct: 140 QDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQ 199

Query: 259 AHALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLD---------------- 292
            H L   +    +  L     C Y+           +D     D                
Sbjct: 200 IHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGM 259

Query: 293 VNSARLAFE--RLEAKDVVSWTAMILAYSNHGHGFQV-FRLFARMLKSGTKPDEITFVGV 349
           V SAR  F+   +E K+++SW +MI  Y+    G +V + LF  M     K D I++  +
Sbjct: 260 VKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEM----PKRDLISWNSM 315

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  C   G +E     FN M      K     ++ + D   + G++  A  +  +MP  E
Sbjct: 316 IDGCVKCGKMENAHHLFNXMP-----KRDVVSWANMVDGYAKLGEIDIARGLFDEMP--E 368

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLI---ELQPSSSGAYVLSANVHAARGEWDE 464
           RD +   A++     +G +  A      ++   EL P ++   +++ +  A  G +DE
Sbjct: 369 RDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNA-TLLITLSAIAQLGHFDE 425


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 241/454 (53%), Gaps = 17/454 (3%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K   +  AR+VFD + + +  S+ S+I GY K   ++  R LFD MP
Sbjct: 119 DLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 178

Query: 117 LKLKNVVSWTTVVLGCAH--------NGLIAKL---EVISWTTMCTGLERNAMTKLAREY 165
            + KN++SW +++ G A         + L A++   ++ISW ++  G  ++   + A+  
Sbjct: 179 KEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGL 238

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + +A  LF++MP R+V  +N+M+  Y +N     A+
Sbjct: 239 FDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEAL 298

Query: 226 KLL-NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           ++  ++  +S   P+ETT   +L++   +    L+ A+ I L   ++  L        + 
Sbjct: 299 EVFYDMEKESHLSPDETTLVIVLSAIAQL--GRLSKAVDIHLYIVEKRFLLDGKLGVALI 356

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
             +     +  A   FE +E K +  W AMI   + HG G   F +   + K   KPD I
Sbjct: 357 DMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYI 416

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ D+L R+G ++ A  ++S+
Sbjct: 417 TFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISE 476

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADY-IGERLIELQPSSSGAYVLSANVHAARGEWD 463
           MP    D V+    L AC  H +    +  + E LI     +  +YVL +N++A+   W+
Sbjct: 477 MPIEPND-VIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYASFEMWE 535

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +  +VR  M ER+++KV   S IE+ GK H  L 
Sbjct: 536 DVRRVRTMMKERKIEKVPGCSWIELDGKVHEFLC 569



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 138/268 (51%), Gaps = 32/268 (11%)

Query: 8   GKVKEATKLFDEM--SQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G ++ A +LFD M   + + +S  SMI  + +  D +  A  LF  MPE  +++++ +++
Sbjct: 165 GLIESARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPE--KDLISWNSL 222

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           IDGYVK GR+++A+ +FD +   +V +W ++I GY K   V + + LFD MP   ++VV+
Sbjct: 223 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMP--HRDVVA 280

Query: 125 WTTVVLGCAHNGL-IAKLEVI-----------SWTTMCTGLERNAMTKLAR-----EYFV 167
           + +++ G   N   +  LEV              TT+   L  +A+ +L R     +  +
Sbjct: 281 YNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVL--SAIAQLGRLSKAVDIHL 338

Query: 168 QMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K    D     A+I  Y   G++ QA  +F  +  +++  WNAMI   A +G   A
Sbjct: 339 YIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEA 398

Query: 224 AMKLLNLMFQSRFM-PNETTCTSILTSC 250
           A  +L +  + RF+ P+  T   +L +C
Sbjct: 399 AFDML-MEIEKRFIKPDYITFVGVLNAC 425


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 258/508 (50%), Gaps = 30/508 (5%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
           G  KEA  LF EM +    P+ V+   +I+   +  DL   E +   + E +   N +  
Sbjct: 219 GCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK---ARQV--------DEGRR 110
           +A++D Y+K G +D+ARK+FDE  + N+  + +++S Y +   AR+V          G R
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 111 LFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM----TKLARE 164
             DR+ +   +        V  G   +G + +  +  W  +C  +    M     ++A  
Sbjct: 339 P-DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACR 397

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F +M NK  V+WN++I  +V  G+M  A ++F+ MP  ++ +WN MI    +      A
Sbjct: 398 VFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEA 457

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           ++L  +M       ++ T   + ++C  +    LA  +    G+ ++  + +        
Sbjct: 458 IELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIH---GYIKKKDIHFDMHLGTAL 514

Query: 285 WDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
            D   +  D  SA   F ++  +DV +WTA I A +  G+G     LF  ML+ G KPD 
Sbjct: 515 VDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           + FV +L+  SH GLVE+G   F  M   YG  P+A HY C+ D+L RAG + EA+ +++
Sbjct: 575 VVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLIN 634

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M     D V+ G+LL ACR+H +V +A Y  ER+ EL P  +G +VL +N++A+ G WD
Sbjct: 635 SMQMEPND-VIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWD 693

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           + A+VR  + E+   K+   S IE+ GK
Sbjct: 694 DVAKVRLHLKEKGAHKMPGSSSIEINGK 721



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 175/413 (42%), Gaps = 69/413 (16%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +R++  E+++I  Y + G +D  R+VFD++ E NV SWTSLI GY K     E   LF  
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE 230

Query: 115 M-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG---LERNAMTKLAREYFVQM 169
           M  + ++ N V+   V+  CA    +  L++      C G   LE NA+           
Sbjct: 231 MVEVGIRPNSVTMVGVISACAK---LQDLQLGEQVCTCIGELELEVNALMV--------- 278

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                   NA++  Y+  G + +A ++F+    +N+  +N ++  Y R G     + +L 
Sbjct: 279 --------NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLG 330

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFE-------QETSLTYKC- 278
            M +    P+  T  S +++C  + +       H   +R G E          ++  KC 
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCG 390

Query: 279 ----TCHY---------VFWD---WGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
                C           V W+    GF    D+ SA   F  +   D+VSW  MI A   
Sbjct: 391 KQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQ 450

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF-KPRA 379
                +   LF  M   G   D++T VGV S C + G         +L    +G+ K + 
Sbjct: 451 ESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLG-------ALDLAKWIHGYIKKKD 503

Query: 380 EHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            H+     + L D+  R G  + AM+V +KM   +RD     A +GA  + G+
Sbjct: 504 IHFDMHLGTALVDMFARCGDPQSAMQVFNKMV--KRDVSAWTAAIGAMAMEGN 554



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +P+  T   +L++C     + E    H   +++GFE++         H+    +G   ++
Sbjct: 136 VPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDM-FVENSLIHF----YGECGEI 190

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           +  R  F+++  ++VVSWT++I  Y+  G   +   LF  M++ G +P+ +T VGV+S C
Sbjct: 191 DCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISAC 250

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           +    ++ G +    +      +  A   + L D+  + G + +A ++
Sbjct: 251 AKLQDLQLGEQVCTCIGE-LELEVNALMVNALVDMYMKCGAIDKARKI 297



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           ++++I  +S  G G++   +F +++  G  PD  TF  VLS C+ +  + +G +    + 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           +  GF+      + L       G++    RV  KM   ER+ V   +L+G 
Sbjct: 167 K-MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMS--ERNVVSWTSLIGG 214


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 260/518 (50%), Gaps = 39/518 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A ++F E+   D +S  SM++ +++N    +A   F  M ++  N   + A I  
Sbjct: 313 GWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFN--PDHACIVS 370

Query: 68  YVKA----GRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            + A    GR+   R+V      +  + ++    +L+  Y K   V+   R+FDRM  ++
Sbjct: 371 LLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRM--RI 428

Query: 120 KNVVSWTTVVLGCAHNGL---------IAKLEVISWTTM--------CTGLERNAMTKLA 162
           K+ VSWTT++   A +            A+ E I    M        C+GL+  ++ K  
Sbjct: 429 KDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQV 488

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             Y ++    D++  N +I  Y + G +  A  +F ++ ++++ TW +M++ +A NG   
Sbjct: 489 HSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLH 548

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCT 279
            A+ L   M  +   P+      IL +  G+    +    H   IR  F  E ++     
Sbjct: 549 EAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLV 608

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          +N A   F+  + KDVV WTAMI A   HGHG Q   +F RML++G 
Sbjct: 609 DMYSGCG-----SMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGV 663

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            PD ++F+ +L  CSH+ LV++G+   ++M   Y  +P  EHY+C+ D+L R+GQ +EA 
Sbjct: 664 SPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAY 723

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
           + +  MP  E   VV  ALLGACR+H +  +A    ++L+EL+P + G YVL +NV A  
Sbjct: 724 KFIKSMPL-EPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEM 782

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           G+W+   ++R KM E+ ++K  + S IE+    HT  A
Sbjct: 783 GKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTA 820



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 171/424 (40%), Gaps = 81/424 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-------- 55
           +G  G++ +A +LFD M      S  ++I   L +    +A  ++RAM  S+        
Sbjct: 103 YGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPD 162

Query: 56  ---------------------------------RNIVAESAMIDGYVKAGRVDEARKVFD 82
                                            R+ +  +A++  Y K G +D A +VF+
Sbjct: 163 GCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFE 222

Query: 83  EIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV--VLGCAHNGLIA 139
            + +G +V SW S ISG  +     E   LF RM     ++ S+TTV  +  CA    +A
Sbjct: 223 WMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAE---LA 279

Query: 140 KLEVISWTTMCTGLERNA-MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           +L          G E +A + K   E+ +Q         NA++  Y   G +  A  +F 
Sbjct: 280 QLN--------HGRELHAALLKCGTEFNIQC--------NALLVMYARCGWVDSALRVFR 323

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            +  ++  +WN+M+  Y +N     A+     M Q+ F P+     S+L++  G L  ++
Sbjct: 324 EIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAV-GHLGRLI 382

Query: 259 ----AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
                HA A++   + +  +       Y+         V  +   F+R+  KD VSWT +
Sbjct: 383 NGREVHAYAVKQRLDSDLQIANTLMDMYIKC-----YSVECSARVFDRMRIKDHVSWTTI 437

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y+      +    F    K G K D +    +L  CS       G K+ +L+ + + 
Sbjct: 438 IACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS-------GLKSISLLKQVHS 490

Query: 375 FKPR 378
           +  R
Sbjct: 491 YAIR 494



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 26/270 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-- 237
           ++  Y   G +  A  LF+ MP R V++WNA+I     +G  G A+ +   M  S  +  
Sbjct: 99  LLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAG 158

Query: 238 --PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+  T  S+L +C    +       H LA++ G ++ T +       Y     G    
Sbjct: 159 AAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYA--KCGL--- 213

Query: 293 VNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++SA   FE + + +DV SW + I     +G   +   LF RM   G   +  T VGVL 
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQ 273

Query: 352 DCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
            C+    +  GR+    L+     F  +    + L  +  R G V  A+RV  ++   ++
Sbjct: 274 VCAELAQLNHGRELHAALLKCGTEFNIQC---NALLVMYARCGWVDSALRVFREIG--DK 328

Query: 411 DHVVLGALLGAC----RLHGDVRMADYIGE 436
           D++   ++L +C    RL+ +    D+ GE
Sbjct: 329 DYISWNSML-SCYVQNRLYAEA--IDFFGE 355



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 55/235 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRN 57
           +G  G+V  A  +F+ + + D V+  SM+  F  N  L +A ALF  M      P+S   
Sbjct: 510 YGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVAL 569

Query: 58  I-------------------------------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
           +                                  S+++D Y   G ++ A KVFDE   
Sbjct: 570 VGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKC 629

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL------- 137
            +V  WT++I+         +   +F RM       + VS+  ++  C+H+ L       
Sbjct: 630 KDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFY 689

Query: 138 ----IAKLEVISW----TTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITA 183
               ++K ++  W      +   L R+  T+ A ++   MP     V W A++ A
Sbjct: 690 LDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGA 744


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 168/592 (28%), Positives = 287/592 (48%), Gaps = 90/592 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
            S +G  G  + A ++FDEM +    D VS  S++  +++  D  +A  +F  M E    
Sbjct: 168 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 227

Query: 56  ------------------------------------RNIVAESAMIDGYVKAGRVDEARK 79
                                                ++   +A++D Y K G ++EA K
Sbjct: 228 RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANK 287

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG 136
           VF+ +   +V SW ++++GY +  + D+   LF+++    ++L NVV+W+ V+ G A  G
Sbjct: 288 VFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL-NVVTWSAVIAGYAQRG 346

Query: 137 L-IAKLEVISWTTMCTGLERNAMTKL---------------------AREYFVQM----P 170
           L    L+V     +C G E N +T +                     A ++ + +    P
Sbjct: 347 LGFEALDVFRQMRLC-GSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDP 405

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLL 228
             D++  NA+I  Y    +   A  +F+L+P   R+V TW  +I   A++G    A++L 
Sbjct: 406 GDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF 465

Query: 229 NLMFQ--SRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYV 283
           + M Q  +  MPN  T +  L +C   G L      HA  +R  FE        C     
Sbjct: 466 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM- 524

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
              +    DV++AR+ F+ +  ++ VSWT+++  Y  HG G +  ++F  M K G  PD 
Sbjct: 525 ---YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDG 581

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TFV VL  CSH+G+V++G   FN M++ +G  P AEHY+C+ D+L RAG++ EAM ++ 
Sbjct: 582 VTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIR 641

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP      V + ALL ACR++ +V + +Y   +L+EL+  + G+Y L +N++A    W 
Sbjct: 642 GMPMKPTPAVWV-ALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWK 700

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           + A++R  M+   +KK    S ++ +    T  A     PM +  Y +L+++
Sbjct: 701 DVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 752



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 181/426 (42%), Gaps = 81/426 (19%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFD 113
           N+   + ++  Y + G  + AR+VFDE+ E   G++ SW S+++ Y +        ++F+
Sbjct: 160 NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFE 219

Query: 114 RMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL--------------ERN 156
           RM   L    + VS   V+  CA  G  ++ + +    + +GL               + 
Sbjct: 220 RMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC 279

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMI 212
            M + A + F +M  KD+V+WNAM+T Y   G    A  LF  + +     NV TW+A+I
Sbjct: 280 GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 339

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET 272
             YA+ G    A+ +   M      PN  T  S+L+ C          ALA  L   +ET
Sbjct: 340 AGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGC----------ALAGTLLHGKET 389

Query: 273 SLTYKCTCHYVFWDWGFQLDVN-----------------------SARLAFERLEAKD-- 307
                  CH +   W   LD N                       +AR  F+ +  KD  
Sbjct: 390 H------CHAI--KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRS 441

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGT--KPDEITFVGVLSDCSHAGLVEKGRKT 365
           VV+WT +I   + HG   +   LF++ML+      P+  T    L  C+  G +  GR+ 
Sbjct: 442 VVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI 501

Query: 366 FNLMSRAYGFKPRAEH-----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
                 AY  + R E       +CL D+  ++G V  A  V   M  H+R+ V   +L+ 
Sbjct: 502 -----HAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM--HQRNGVSWTSLMT 554

Query: 421 ACRLHG 426
              +HG
Sbjct: 555 GYGMHG 560


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 158/514 (30%), Positives = 250/514 (48%), Gaps = 50/514 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V  A ++FD     D VS  +++  ++R+ D+ +A  +F  MPE  R+  A S+
Sbjct: 151 YSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVFARMPE--RSAAAVSS 208

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLK 118
           M+  + + G V+EAR VFD     + ++WT++IS + +     E   +F  M     P+ 
Sbjct: 209 MVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVD 268

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------ARE 164
              +VS   VV  CA + +I   EV     +  GL      +NA+  +         AR 
Sbjct: 269 EAVMVS---VVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARR 325

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F    + D  +WN+MI+ Y+  G +  A  LFN+MP ++  +W+AMI    +N     A
Sbjct: 326 LFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEA 385

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHA--------LAIRLGFEQETS 273
           + + + M      P+E T  S++++C  +    +  L H         + I LG      
Sbjct: 386 LTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLG-TSLID 444

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +  KC C            + +A   F+ +E K    W A+I+  + +G   +   +F+ 
Sbjct: 445 MYMKCGC------------MEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSE 492

Query: 334 MLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           M  SG   P EITF GVLS C H GLVE+GR+ F LM   Y   P   HY C+ D+L RA
Sbjct: 493 METSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRA 552

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G V+EA  ++  M P   D    GALLGAC  H D  + + +G++L++L P   G   + 
Sbjct: 553 GYVREAEDLIQSM-PMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTML 611

Query: 453 ANVHAARGEWDEFAQVRKKMERRVKKVASFSQIE 486
           +N++A+ G W     +R  M++ V KVA  S +E
Sbjct: 612 SNIYASEGMWQCVKDLRGSMKQHVAKVAGCSVVE 645


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 160/523 (30%), Positives = 264/523 (50%), Gaps = 59/523 (11%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAE 61
           GK  E+  LF++M +    PD V+  +++    +   + KA  +  +    + Q +++  
Sbjct: 238 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 297

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--RMPLK- 118
           +AMID Y K G V+ AR++FD + E NV SW+++I+ Y    Q   GR+  D  RM L  
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ---GRKALDLFRMMLSS 354

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--KLAREY--------- 165
             L + ++  +++  C +   + ++  +       G+ +N +   KL   Y         
Sbjct: 355 GMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDA 414

Query: 166 ---FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN--GP 220
              F  M  +D V+W+ M+  +   G+       F     R +    A  D Y     G 
Sbjct: 415 YGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF-----RELIRCGARPDNYTLPFCGN 469

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQETSLTY- 276
              ++ L + M +   +P++    +++ +C  +     A  +     R  F+ +  L   
Sbjct: 470 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 529

Query: 277 ------KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
                 KC C            V SAR  F+R+E K+V+SW+AMI AY  HG G +   L
Sbjct: 530 MIDMHAKCGC------------VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 577

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F  ML+SG  P++IT V +L  CSHAGLVE+G + F+LM   Y  +   +HY+C+ D+L 
Sbjct: 578 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 637

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG++ EA++++  M   E+D  + GA LGACR H DV +A+     L+ELQP + G Y+
Sbjct: 638 RAGRLDEALKLIESMTV-EKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 696

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           L +N++A  G W++ A+ R  M +RR+KK+  ++ IEV  K H
Sbjct: 697 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSH 739



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 206/473 (43%), Gaps = 78/473 (16%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------AMPESQ-------- 55
           + +A  LFD M   D VS + M+  F +  D       FR      A P++         
Sbjct: 129 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 188

Query: 56  ----RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
               +N+  + A++D YVK   +++AR +FD++ E ++ +WT +I GY +  + +E   L
Sbjct: 189 CRDLKNL--QMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 246

Query: 112 FDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           F++M  +  + + V+  TVV  CA  G + K  +I                + R+ F   
Sbjct: 247 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID-------------DYIQRKKF--- 290

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              D++   AMI  Y   G +  A E+F+ M ++NV +W+AMI  Y  +G    A+ L  
Sbjct: 291 -QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 349

Query: 230 LMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           +M  S  +P++ T  S+L    +C  + +    HA A   G  Q   +  K    Y ++ 
Sbjct: 350 MMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYR 409

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVFR-------------- 329
                 ++ A   F+ +  +D VSW+ M+  ++  G   + F  FR              
Sbjct: 410 -----ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTL 464

Query: 330 -----------LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
                      LF +M + G  PD++  V V+  C+  G + K R   + + R   F+  
Sbjct: 465 PFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK-KFQLD 523

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
               + + D+  + G V+ A  +  +M   E++ +   A++ A   HG  R A
Sbjct: 524 VILGTAMIDMHAKCGCVESAREIFDRM--EEKNVISWSAMIAAYGYHGQGRKA 574



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 26/260 (10%)

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           ++IV  N +I  Y     +  A  LF+ M  R+  +W+ M+  +A+ G           +
Sbjct: 111 ENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFREL 170

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            +    P+  T   ++ +C   L+N L  AL           +  KC             
Sbjct: 171 IRCGARPDNYTLPFVIRACRD-LKN-LQMAL---------VDMYVKCR------------ 207

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++  AR  F++++ +D+V+WT MI  Y+  G   +   LF +M + G  PD++  V V+ 
Sbjct: 208 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 267

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+  G + K R   + + R   F+      + + D+  + G V+ A  +  +M   E++
Sbjct: 268 ACAKLGAMHKARIIDDYIQRK-KFQLDVILGTAMIDMYAKCGCVESAREIFDRM--EEKN 324

Query: 412 HVVLGALLGACRLHGDVRMA 431
            +   A++ A   HG  R A
Sbjct: 325 VISWSAMIAAYGYHGQGRKA 344


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 150/464 (32%), Positives = 242/464 (52%), Gaps = 46/464 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +A++  Y K   + +A ++F EI   GNV SWT++ISG+ +    +E   LF  M  K  
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWT-----TMCTGLERNAMTKLAREYFVQMPNKDIV 175
               +T  V+       +  L VIS +      + T  ER++                  
Sbjct: 394 RPNEFTYSVI-------LTALPVISPSEVHAQVVKTNYERSS-----------------T 429

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
              A++ AYV  G + +A+++F+ +  +++  W+AM+  YA+ G   AA+K+   + +  
Sbjct: 430 VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG 489

Query: 236 FMPNETTCTSILTSCEG----MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             PNE T +SIL  C      M +    H  AI+   +  +SL   C    +   +  + 
Sbjct: 490 IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD--SSL---CVSSALLTMYAKKG 544

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++ SA   F+R   KD+VSW +MI  Y+ HG   +   +F  M K   K D +TF+GV +
Sbjct: 545 NIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFA 604

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+HAGLVE+G K F++M R     P  EH SC+ D+  RAGQ+++AM+V+  M P+   
Sbjct: 605 ACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAG 663

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             +   +L ACR+H    +     E++I ++P  S AYVL +N++A  G+W E A+VRK 
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           M ER VKK   +S IEVK K ++ LA     P+++  Y+ L+++
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 173/394 (43%), Gaps = 61/394 (15%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   ++++D Y+K     + RKVFDE+ E NV +WT+LISGY +    DE   LF RM 
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQ 186

Query: 117 LKLKNVVSWT-TVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            +     S+T    LG  A  G+  +   +    +  GL+                 K I
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD-----------------KTI 229

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N++I  Y+  GN+ +A  LF+    ++V TWN+MI  YA NG +  A+ +   M  +
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLN 289

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTY-------KCTCHYVF 284
               +E++  S++  C  + E       H   ++ GF  + ++         KCT     
Sbjct: 290 YVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAM--- 346

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +++ RL  E     +VVSWTAMI  +  +    +   LF+ M + G +P+E 
Sbjct: 347 --------LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 345 TFVGVLSDCS-------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           T+  +L+          HA +V    KT    S   G        + L D   + G+V+E
Sbjct: 399 TYSVILTALPVISPSEVHAQVV----KTNYERSSTVG--------TALLDAYVKLGKVEE 446

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           A +V S +   ++D V   A+L      G+   A
Sbjct: 447 AAKVFSGI--DDKDIVAWSAMLAGYAQTGETEAA 478



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 194/447 (43%), Gaps = 47/447 (10%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMIDGY 68
           K+  K+FDEM + + V+  ++I+ + RN    +   LF  M    +Q N    +A +   
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVL 204

Query: 69  VKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + G      +V   + +      +    SLI+ Y K   V + R LFD+   ++K+VV+
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT--EVKSVVT 262

Query: 125 WTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMTKLAREYFV 167
           W +++ G A NGL                 +++    S   +C  L+    T+      V
Sbjct: 263 WNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVV 322

Query: 168 Q---MPNKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGA 223
           +   + +++I    A++ AY     M  A  LF  +    NV +W AMI  + +N  +  
Sbjct: 323 KYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
           A+ L + M +    PNE T + ILT+   ++     HA  ++  +E+ +++       YV
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTALP-VISPSEVHAQVVKTNYERSSTVGTALLDAYV 439

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    V  A   F  ++ KD+V+W+AM+  Y+  G      ++F  + K G KP+E
Sbjct: 440 KLG-----KVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAM 399
            TF  +L+ C+         K F+     +  K R +   C++  L     + G ++ A 
Sbjct: 495 FTFSSILNVCAATNASMGQGKQFH----GFAIKSRLDSSLCVSSALLTMYAKKGNIESAE 550

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHG 426
            V  +    E+D V   +++     HG
Sbjct: 551 EVFKRQ--REKDLVSWNSMISGYAQHG 575



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 31/296 (10%)

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNVV 123
           G V + R+  A  +FD+    +  S+ SL+ G+ +  +  E +RLF    R+ +++    
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMD--- 92

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
                   C+    + K+      T+C  L  R    +  +  F+     D+    +++ 
Sbjct: 93  --------CSIFSSVLKVS----ATLCDELFGRQLHCQCIKFGFLD----DVSVGTSLVD 136

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+   N     ++F+ M +RNV TW  +I  YARN      + L   M      PN  T
Sbjct: 137 TYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196

Query: 243 CTSIL--TSCEGM-LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             + L   + EG+    +  H + ++ G ++   ++      Y+        +V  AR+ 
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG-----NVRKARIL 251

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           F++ E K VV+W +MI  Y+ +G   +   +F  M  +  +  E +F  V+  C++
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 239/466 (51%), Gaps = 42/466 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGN--VYSWTSLISGYFKARQVDEGRRLFDRM--- 115
           ++ +I  Y K   VD ARKVF+E +        + +L+SGY    +  E   LF +M   
Sbjct: 87  QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEE 146

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             P+   N V+   ++  C        LE+ S +  C+ L+                + D
Sbjct: 147 GVPV---NSVTLLGLIPACVSP---INLELGS-SLHCSTLKYGF-------------DSD 186

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N  IT Y+  G++  A +LF+ MP + + +WNAM+  YA+NG     ++L   M  
Sbjct: 187 VSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM 246

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTCHYVFWDWGFQ 290
           +   P+  T   +L+SC  +    + H +  ++   GF     L       Y        
Sbjct: 247 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCG---- 302

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  A+  F+ +  + +VSWTA+I  Y  HGHG    +LF  M++SG +PD   FV VL
Sbjct: 303 -NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 361

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSHAGL ++G + F +M R Y  +P  EHYSC+ D+L RAG++KEA  ++  MP  + 
Sbjct: 362 SACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPI-KP 420

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  V GALLGAC++H +V +A+   ER+IEL+P + G YVL +N+++         ++R 
Sbjct: 421 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 480

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLAPMR-----EMGYVVLKEVD 510
            M E+++KK    S +E+KG+ H  +   R     +  Y VL+E++
Sbjct: 481 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELE 526



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 56/245 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-------- 53
           G V  A KLFDEM     +S  +M++ + +N        L+R M      P+        
Sbjct: 201 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 260

Query: 54  -SQRNIVAES----------------------AMIDGYVKAGRVDEARKVFDEIYEGNVY 90
            S  N+ A+S                      A+I+ Y + G + +A+ VFD + E  + 
Sbjct: 261 SSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 320

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT++I GY      +   +LF  M       +  ++  V+  C+H GL  +        
Sbjct: 321 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ-------- 372

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWT 207
              GLE   M K  R Y ++ P  +   ++ M+     AG + +A  L   MP + +   
Sbjct: 373 ---GLEYFKMMK--RNYQLE-PGPE--HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 424

Query: 208 WNAMI 212
           W A++
Sbjct: 425 WGALL 429


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 255/504 (50%), Gaps = 57/504 (11%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAESAMIDGY 68
           + + ++FD + +P+      MI V + N++  KA  L+  M    S+ N     A++   
Sbjct: 89  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKAC 148

Query: 69  VKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
             +G V E  +V   + +    G+ +  +S I  Y    ++ E RR+ D           
Sbjct: 149 SDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG-------- 200

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITA 183
                          +++ + W  M  G  R    + ARE F  MP++ +++ WNAMI+ 
Sbjct: 201 --------------GEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISG 246

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +   G +  A E F+ M +R+  +W+AMID Y + G    A+++ + M + +  P +   
Sbjct: 247 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 306

Query: 244 TSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKCTCHYVFWDWGFQLDV 293
            S+L++C       +G   +  A   +I+L     TSL     KC    + W+       
Sbjct: 307 PSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE------- 359

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
                 FE++  K+V SW AMI   + HG       LF++M      P+EITFVGVL+ C
Sbjct: 360 -----VFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNAC 411

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H GLV+KG   FN M + YG +P+ EHY C+ D+L RAG + EA +VVS +P  E    
Sbjct: 412 AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT-EPTPA 470

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V GALLGACR HG+V + + +G+ L+EL+P +SG Y L +N++A  G W+E  +VRK M 
Sbjct: 471 VWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMK 530

Query: 473 ERRVKKVASFSQIEV-KGKDHTLL 495
           ER +K     S I++ +G+ H  +
Sbjct: 531 ERGIKTTPGTSIIDLGRGEVHKFI 554



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
           P+G + +   L  ++      T CT+ L   +       AHAL +R G  Q++ +     
Sbjct: 21  PKGHSTETSKLSHKAILHLLNTQCTTSLHHLKQ------AHALILRTGHLQDSYIAGSLV 74

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y        L   S+   F+ +   +V  W  MI     +   F+   L+  M+ + +
Sbjct: 75  KSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHS 134

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P++ T+  VL  CS +G+V +G +    + + +G        S    +    G++ EA 
Sbjct: 135 RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEAR 193

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           R++      E D V   A++      G+V  A      L E  P  S
Sbjct: 194 RILDDKGG-EVDAVCWNAMIDGYLRFGEVEAA----RELFEGMPDRS 235


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 155/526 (29%), Positives = 256/526 (48%), Gaps = 73/526 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV 59
           S     G ++EA  +++EM Q   DPV   +++  +LR  +L  A  +F  M  + R+++
Sbjct: 139 SGLAKAGMLREAELVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGM--TVRDVI 196

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK- 118
           + SAM+DG  K G V EAR+VFD + E +V SWTS+I GY K     +G  LF  M  + 
Sbjct: 197 SWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREG 256

Query: 119 -LKNVVSWTTVVLGCA-----------HNGLIA--------------------------- 139
              N  + + V+  CA           HN +I+                           
Sbjct: 257 VQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQ 316

Query: 140 -------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                  + +++SW ++ TG  ++ M + A   F  MP KD V+W +M+  + + G M +
Sbjct: 317 RAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRE 376

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           + ELF  MP ++V  W A+I  +  NG   +A++    M Q    PN  T + +L++   
Sbjct: 377 SVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALAS 436

Query: 253 ML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLE 304
           +    +   AHA +I +G+  ++++       Y              RLA     F  + 
Sbjct: 437 LAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYA----------KCGRLAEAHHVFSSIS 486

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
              +++  +MI A+  HG      +LF +M  +G KP+ +TF+G+L+ C+ AG V++G  
Sbjct: 487 NPSLIAINSMITAFVQHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYN 546

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACR 423
            F  M   YG +P  EHY+C+ D+L RAG + EA+ +++ MP  + DH     ALL A  
Sbjct: 547 YFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP--QNDHSDAWAALLSASS 604

Query: 424 LHGDVRMADYIGERLIELQPSSSGAY-VLSANVHAARGEWDEFAQV 468
           LH ++  A    ++L+E  P  + AY VLS    +A  E++E  +V
Sbjct: 605 LHSNLAFAKIAAQKLLEKDPYDATAYTVLSKMFSSAGMEYEEMQKV 650



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 209/476 (43%), Gaps = 79/476 (16%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P+     +++T + R   L  A+ LF  MP   R++++ +A++  Y   G +  AR VFD
Sbjct: 36  PNRAHLNALLTAYGRRGRLRDAQLLFDQMPS--RDVISWTALLTAYADGGDLASARLVFD 93

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           ++   N  SW +L+S Y +A +      LF +MP K  N VS+  ++ G A  G++ + E
Sbjct: 94  DMPRRNAPSWNALLSVYLRAARPRAAHALFYKMPAK--NAVSYGAIISGLAKAGMLREAE 151

Query: 143 VI------SW------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           ++       W        +  G  R     +A   F  M  +D+++W+AM+      G++
Sbjct: 152 LVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSV 211

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++A  +F+ MP+R+V +W +MI  Y + G     + L   M +     N TT + +L +C
Sbjct: 212 SEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDAC 271

Query: 251 EGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW-------------------- 287
            G     E +  H L I +GFE +  L       Y  + W                    
Sbjct: 272 AGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWN 331

Query: 288 ----GF-QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF---------- 328
               G+ Q D V  A + F+ +  KD VSWT+M++ ++N G      ++F          
Sbjct: 332 SLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVA 391

Query: 329 ------------------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
                             R F RM + G KP+ ITF  +LS  +   ++ +GR+  +  S
Sbjct: 392 WTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQA-HAYS 450

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
              G+   +  ++ L  +  + G++ EA  V S +       + + +++ A   HG
Sbjct: 451 INMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSI--SNPSLIAINSMITAFVQHG 504



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+L F+++ ++DV+SWTA++ AY++ G       +F  M +        ++  +LS    
Sbjct: 57  AQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP----SWNALLSVYLR 112

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           A         F  M         A  Y  +   L +AG ++EA  V  +MP   RD V  
Sbjct: 113 AARPRAAHALFYKMP-----AKNAVSYGAIISGLAKAGMLREAELVYEEMPQQWRDPVGS 167

Query: 416 GALLGACRLHGDVRMA 431
            AL+      G++ MA
Sbjct: 168 NALMAGYLRVGELAMA 183


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 218/427 (51%), Gaps = 45/427 (10%)

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
           SLISGY  +   D   RLFD    + K+VV+WT ++ G   NG  ++  V       TG+
Sbjct: 143 SLISGYSSSGLFDFASRLFD--GAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGV 200

Query: 154 ERNAMT--------------KLARE----YFVQMPNK-DIVAWNAMITAYVDAGNMAQAS 194
             N MT              +  R     Y      K D+   ++++  Y        A 
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQ 260

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--- 251
           ++F+ MP RNV TW A+I  Y ++      M +   M +S   PNE T +S+L++C    
Sbjct: 261 KVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320

Query: 252 GMLENMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +      H   I+   E  T+       L  KC C            +  A L FERL 
Sbjct: 321 ALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------LEEAILVFERLH 368

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            K+V +WTAMI  ++ HG+    F LF  ML S   P+E+TF+ VLS C+H GLVE+GR+
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F  M   +  + +A+HY+C+ D+  R G ++EA  ++ +M P E  +VV GAL G+C L
Sbjct: 429 LFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERM-PMEPTNVVWGALFGSCLL 487

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFS 483
           H D  +  Y   R+I+LQPS SG Y L AN+++    WDE A+VRK+M +++V K   FS
Sbjct: 488 HKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFS 547

Query: 484 QIEVKGK 490
            IEVKGK
Sbjct: 548 WIEVKGK 554



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 61/313 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +  +G    A++LFD     D V+  +MI  F+RN    +A   F  M ++       
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + ++   S+++D Y K    D+A+KVFDE
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDE 265

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
           +   NV +WT+LI+GY ++R  D+G  +F+ M LK     N  + ++V+  CAH G + +
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHR 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +    +   +E N                   A   +I  YV  G + +A  +F  +
Sbjct: 325 GRRVHCYMIKNSIEINT-----------------TAGTTLIDLYVKCGCLEEAILVFERL 367

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
            ++NV+TW AMI+ +A +G    A  L   M  S   PNE T  ++L++C   G++E   
Sbjct: 368 HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR 427

Query: 259 AHALAIRLGFEQE 271
              L+++  F  E
Sbjct: 428 RLFLSMKGRFNME 440



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 28/273 (10%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D    N++I+ Y  +G    AS LF+    ++V TW AMID + RNG    AM     
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENML----AHALAIRLG--------FEQETSLTYKC 278
           M ++    NE T  S+L +  G +E++      H L +  G              +  KC
Sbjct: 195 MKKTGVAANEMTVVSVLKAA-GKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
           +C+            + A+  F+ + +++VV+WTA+I  Y       +   +F  MLKS 
Sbjct: 254 SCY------------DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             P+E T   VLS C+H G + +GR+    M +    +      + L D+  + G ++EA
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEA 360

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           + V  ++  HE++     A++     HG  R A
Sbjct: 361 ILVFERL--HEKNVYTWTAMINGFAAHGYARDA 391


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 252/483 (52%), Gaps = 35/483 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q  +   S ++D Y K G V  AR+ FDE+ E NV  + +LI+G  +  ++++ R+LF  
Sbjct: 174 QSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYD 233

Query: 115 MPLKLKNVVSWTTVVLGCAHNGL------------IAKLEVISWT-----TMCTGLERNA 157
           M  + K+ +SWT ++ G   NGL            +  LE+  +T     T C G+    
Sbjct: 234 M--QEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQ 291

Query: 158 MTKLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             K    Y ++   +D I   +A++  Y    ++  A  +F  M  +NV +W AM+  Y 
Sbjct: 292 EGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYG 351

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETS 273
           +NG    A+K+   M  +   P++ T  S+++SC  +    E    H  A+  G      
Sbjct: 352 QNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL----- 406

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +++    + +   +G    +  +   F  +   D VSWTA++  Y+  G   +  RLF  
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFES 466

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML  G KPD++TF+GVLS CS AGLV+KG + F  M + +   P  +HY+C+ D+  RAG
Sbjct: 467 MLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAG 526

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           +++EA + ++KM P   D +   +LL +CR H ++ +  +  E L++L+P ++ +Y+L +
Sbjct: 527 RLEEARKFINKM-PFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLS 585

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           +++AA+G+W+E A +RK M ++ ++K    S I+ K + H   A     P  +  Y  L+
Sbjct: 586 SIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELE 645

Query: 508 EVD 510
           +++
Sbjct: 646 KLN 648



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 190/425 (44%), Gaps = 38/425 (8%)

Query: 6   CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           C    K    +      P+     ++++ + +   +  A  +F  MP  QRN+ + + ++
Sbjct: 25  CRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMP--QRNLYSWNTLL 82

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY----FKARQVDEGRRLFDRMPLKLKN 121
             Y K   + E  +VF  +   ++ SW SLIS Y    F  + V     +    P  L  
Sbjct: 83  SSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNR 142

Query: 122 VVSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGL----ERNAMTKLAREYFVQ 168
           +   T ++L    GC H GL     + K    S+  + + L     +  +   AR+ F +
Sbjct: 143 IALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDE 202

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K++V +N +I   +    +  + +LF  M +++  +W AMI  + +NG +  A+ L 
Sbjct: 203 MPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLF 262

Query: 229 NLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQE-----TSLTYKCTC 280
             M       ++ T  S+LT+C G++   E    HA  IR  ++         +   C C
Sbjct: 263 REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC 322

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                       + SA   F ++  K+VVSWTAM++ Y  +G+  +  ++F  M  +G +
Sbjct: 323 K----------SIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD+ T   V+S C++   +E+G + F+  +   G        + L  +  + G ++++ R
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHR 431

Query: 401 VVSKM 405
           + S+M
Sbjct: 432 LFSEM 436



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G  G ++++ +LF EMS  D VS  ++++ + +     +   LF +M     + + V  
Sbjct: 420 YGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTF 479

Query: 62  SAMIDGYVKAGRVDEARKVFDE-IYEGNVYS----WTSLISGYFKARQVDEGRRLFDRMP 116
             ++    +AG V +  ++F+  I E  +      +T +I  + +A +++E R+  ++MP
Sbjct: 480 IGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMP 539

Query: 117 LKLKNVVSWTTVVLGC 132
               + + W +++  C
Sbjct: 540 FS-PDAIGWASLLSSC 554


>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
 gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
          Length = 560

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 231/454 (50%), Gaps = 36/454 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +  TG ++ A + FD M Q D VS   +   + +   + ++   F  +P+  R++V+ ++
Sbjct: 136 YAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRWFFDNVPD--RDLVSWNS 193

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y +   +D+AR+VF+ I   NV+SW ++I+ Y +    DE RR+F  MP K  NVV
Sbjct: 194 IMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEARRVFGEMPRK--NVV 251

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           SW T++   +  G++ +                     A+E F +MP KD+++WN+++TA
Sbjct: 252 SWNTLLAAYSERGMLCE---------------------AKEMFDRMPQKDVISWNSLVTA 290

Query: 184 YVDAGNM---AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           Y   G++   A A E+F+ M +R++ +WN MI  YA++G     + L  +M      P+ 
Sbjct: 291 YAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDS 350

Query: 241 TTCTSILTSCEGM--LENMLAHALAIRLG--FEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            T  ++L +C     LE       AIR G   +  T L        ++ + G    V  A
Sbjct: 351 ITLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGC---VELA 407

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
             AF+ ++ +DV +WTA+I+A++ +GHG     LF      G +PD + F+ +L+ CSHA
Sbjct: 408 MEAFQGIQRRDVTAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTACSHA 467

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL+  GR  F  +   Y      EHY C+ D+L R GQ++ A  V+  M P + D V   
Sbjct: 468 GLLYSGRDFFVALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGM-PFKADFVSWV 526

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
            LLGAC+  GD      + E    L P  +  YV
Sbjct: 527 TLLGACKTQGDAHRGQRVAEAASSLDPGVASPYV 560



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 174/388 (44%), Gaps = 49/388 (12%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D VS  +MI  + +     +A  +F  +PE  R+ VA ++M+  Y +   ++ ++ +FD 
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPE--RSTVAMTSMVVAYAENDALEISKVMFDR 58

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP--------------------------- 116
           I E +  SWT+L+S       + E   +FDRMP                           
Sbjct: 59  IPERDPVSWTALLSVNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHGDLENTKLTF 118

Query: 117 --LKLKNVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLARE 164
             +  +  VSW  ++   A  G +           + + +SWT +     +    + +R 
Sbjct: 119 ATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRW 178

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           +F  +P++D+V+WN++++AY     +  A  +F  + + NV++WN MI  Y +NG    A
Sbjct: 179 FFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEA 238

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            ++   M +     N  +  ++L +       ML  A  +     Q+  +++       +
Sbjct: 239 RRVFGEMPRK----NVVSWNTLLAAYSE--RGMLCEAKEMFDRMPQKDVISWNSLV-TAY 291

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
              G  L V +AR  F+ +  +D++SW  MI AY+  G G +   LF  M   G  PD I
Sbjct: 292 AQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSI 351

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           T + VL  C+ A  +E+G KT +   RA
Sbjct: 352 TLIAVLDACTAARSLERG-KTIHAAIRA 378



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 70/396 (17%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V+  AMI  Y +AG   EA ++F+ + E +  + TS++  Y +   ++  + +FDR+P +
Sbjct: 3   VSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIPER 62

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             + VSWT ++   A NG +  +EVI+                    F +MP +    W 
Sbjct: 63  --DPVSWTALLSVNATNGHL--VEVIN-------------------IFDRMPKRSWRCWQ 99

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            M++AY D G++      F  MP R   +WNA++  YA+ G   +A +  + M Q     
Sbjct: 100 TMLSAYSDHGDLENTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQ----- 154

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD------ 292
                      C+ +   +++ A A R G  QE+   +          W   +       
Sbjct: 155 -----------CDTVSWTIVSEAYAQR-GHIQESRWFFDNVPDRDLVSWNSIMSAYARRA 202

Query: 293 -VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ++ AR  FE +   +V SW  MI AY+ +GH  +  R+F  M     + + +++  +L+
Sbjct: 203 LIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEARRVFGEM----PRKNVVSWNTLLA 258

Query: 352 DCSHAGLVEKGRKTFNLMSR--AYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPP 407
             S  G++ + ++ F+ M +     +      Y+    ILR A   ++ + MR       
Sbjct: 259 AYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILRVAAAREIFDTMR------- 311

Query: 408 HERDHVVLGALLGACRLHGD-------VRMADYIGE 436
            ERD +    ++ A    GD        R+ D  GE
Sbjct: 312 -ERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGE 346



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 46/263 (17%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D V+W AMI AY  AG+  +A  +F ++P+R+     +M+  YA N     A+++  +MF
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAEND----ALEISKVMF 56

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC--TCHYVFWDWGFQ 290
                 +  + T++L+     +     H + +   F++    +++C  T    + D G  
Sbjct: 57  DRIPERDPVSWTALLS-----VNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHG-- 109

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT----------- 339
            D+ + +L F  +  +  VSW A++ AY+  GH       F RM +  T           
Sbjct: 110 -DLENTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYA 168

Query: 340 --------------KPDE--ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                          PD   +++  ++S  +   L++  R+ F  +      +P    ++
Sbjct: 169 QRGHIQESRWFFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGI-----LRPNVFSWN 223

Query: 384 CLADILRRAGQVKEAMRVVSKMP 406
            +     + G   EA RV  +MP
Sbjct: 224 TMIAAYTQNGHFDEARRVFGEMP 246



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 36/209 (17%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQ 55
           +Q G   +V  A ++FD M + D +S  +MI  + ++ D  +   LFR M      P+S 
Sbjct: 292 AQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSI 351

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEG-------NVYSWTSLISGYFKARQVDEG 108
             I    A++D    A  ++  + +   I  G       ++   T+L++ Y     V+  
Sbjct: 352 TLI----AVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGCVELA 407

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
              F    ++ ++V +WT V++  A NG                    A  +L RE+ ++
Sbjct: 408 MEAFQ--GIQRRDVTAWTAVIVAHARNG-----------------HGGAALELFREFGLE 448

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELF 197
               D VA+ +++TA   AG +    + F
Sbjct: 449 GMQPDAVAFLSILTACSHAGLLYSGRDFF 477


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 240/476 (50%), Gaps = 28/476 (5%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLI 96
           +P A ++F  +P    N    + +I  Y  +   + A  +F ++   +V    Y++T  +
Sbjct: 58  IPYAHSIFSRIPNP--NSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFAL 115

Query: 97  SGYFKARQVDEGRRLFDRM-------PLKLKNVVSWTTVVLGCAHNG--LIAKL---EVI 144
                   V+EGR++   +        L ++N +       GC  +   L+ ++   +V+
Sbjct: 116 KSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVV 175

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           SW  + +      + +LA   F +M  +++ +WN MI+ YV  G + +A  +F   P +N
Sbjct: 176 SWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKN 235

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHA 261
           V +WNAMI  Y+  G     + L   M  +   P+  T  S+L++C     + +    HA
Sbjct: 236 VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHA 295

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
              + G   +  +       Y          +  A   F     KD+ +W ++I   S H
Sbjct: 296 YIDKNGISIDGFVATALVDMYSKCG-----SIEKALEVFNSCLRKDISTWNSIISGLSTH 350

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G G    ++F+ ML  G KP+E+TFV VLS CS AGL+++GR+ FNLM   +G +P  EH
Sbjct: 351 GSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEH 410

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y C+ D+L R G ++EA  +V KMP  E   VV  +LLGACR HG+V +A+ + ++L+EL
Sbjct: 411 YGCMVDLLGRVGLLEEAEELVQKMPQKEAS-VVWESLLGACRNHGNVELAERVAQKLLEL 469

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            P  S ++V  +N++A+ G W +  +VR+KM  + V+K    S IEV G  +  LA
Sbjct: 470 SPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLA 525



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 72/347 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A  LFDEM                                 ++RN+ + 
Sbjct: 182 SAYAERGLMELACHLFDEM---------------------------------TERNVESW 208

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LK 118
           + MI GYV  G ++EAR+VF E    NV SW ++I+GY  A +  E   LF+ M    +K
Sbjct: 209 NFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVK 268

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             N  +  +V+  CAH G +++ E   W      +++N ++             D     
Sbjct: 269 PDN-CTLVSVLSACAHVGALSQGE---WVH--AYIDKNGIS------------IDGFVAT 310

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y   G++ +A E+FN   ++++ TWN++I   + +G    A+++ + M    F P
Sbjct: 311 ALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKP 370

Query: 239 NETTCTSILTSCE--GMLE------NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           NE T   +L++C   G+L+      N++ H   I+   E      Y C    +    G  
Sbjct: 371 NEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEH-----YGCMVDLL----GRV 421

Query: 291 LDVNSARLAFERLEAKDV-VSWTAMILAYSNHGHGFQVFRLFARMLK 336
             +  A    +++  K+  V W +++ A  NHG+     R+  ++L+
Sbjct: 422 GLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLE 468



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 124/323 (38%), Gaps = 64/323 (19%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A ++    A  +  A  +F+ +P  N + WN +I  YA +    AA+ + + M  +  +P
Sbjct: 47  ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106

Query: 239 NETTCTSILTSC---EGMLENMLAHALAIRLG-----FEQET--SLTYKCTC-------- 280
           ++ T T  L SC    G+ E    H   ++ G     F Q T   L   C C        
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166

Query: 281 ------HYVFWD-----------------------------WGFQLD-------VNSARL 298
                   V W+                             W F +        +  AR 
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARR 226

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F     K+VVSW AMI  YS+ G   +V  LF  M  +G KPD  T V VLS C+H G 
Sbjct: 227 VFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGA 286

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           + +G      + +  G        + L D+  + G +++A+ V +      +D     ++
Sbjct: 287 LSQGEWVHAYIDKN-GISIDGFVATALVDMYSKCGSIEKALEVFNSCL--RKDISTWNSI 343

Query: 419 LGACRLHGDVRMADYI-GERLIE 440
           +     HG  + A  I  E L+E
Sbjct: 344 ISGLSTHGSGQHALQIFSEMLVE 366


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/507 (30%), Positives = 247/507 (48%), Gaps = 38/507 (7%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRN 57
           F   G  KEA +L   M     +P+  + AS++     L+N +L K    +        N
Sbjct: 21  FAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSN 80

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               + ++D Y +   +  A K+F      NV S+ ++I GY +   V++ + LFD+M L
Sbjct: 81  PFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMEL 140

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
             K+ +SW +++ G A N L            C  L      K A+  F  +  +D   W
Sbjct: 141 VGKDTISWNSMISGYADNLL-----------KCEDL------KAAQLAFDGVTERDTATW 183

Query: 178 NAMITAYVDAGNMAQASELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           N +I+ Y     +     L   M     + NV+TWN +I  +  NG    A++L   M  
Sbjct: 184 NVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQT 243

Query: 234 SRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           S   P+  T   IL +C     +      HA +IR G+E +  +       Y        
Sbjct: 244 SSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG---- 299

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +  A   + R+   ++VS  AM+ AY+ HGHG +   LF  ML +G +PD +TF+ VL
Sbjct: 300 -SIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVL 358

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C HAG VE G + F+LM+  Y   P  +HY+C+ D+L RAG++ EA  +V K+ P + 
Sbjct: 359 SSCVHAGAVETGHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKI-PRKP 416

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D V+ GALLG C + G+V + +   E LIEL+P+++G YVL AN++A  G W +  + R+
Sbjct: 417 DSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQ 476

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLA 496
            + +R + K    S IE +   H  L+
Sbjct: 477 MIKDRGMHKSPGCSWIEDREDIHVFLS 503


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 218/405 (53%), Gaps = 30/405 (7%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + +++  T+LI  Y +   V   R++FD MP    N+V+W  VV  C     ++      
Sbjct: 305 DSHLFVATTLIGMYGECGCVGFARKVFDEMPQP--NLVAWNAVVTACFRGNDVSG----- 357

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           ARE F +M  ++  +WN M+  Y+ AG +  A  +F+ MP R+ 
Sbjct: 358 ----------------AREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDD 401

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
            +W+ MI  ++ NG    +      + ++   PNE + T +L++C           L   
Sbjct: 402 VSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLH-- 459

Query: 266 LGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGH 323
            GF +++  ++  + +    D +    +V  ARL FE + E + +VSWT+MI   + HGH
Sbjct: 460 -GFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGH 518

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +  R+F  M +SG  PDEI+F+ +L  CSHAGL+++G   F+ M R Y  +P  EHY 
Sbjct: 519 GEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYG 578

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+  R+G++++A   + +MP      +V   LLGAC  HG++ +A+ + +RL EL P
Sbjct: 579 CMVDLYGRSGKLQKAYSFICQMPIPP-TAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 637

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           ++SG  VL +NV+A  G+W + A +RK M  +R+KK+ ++S +EV
Sbjct: 638 NNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEV 682



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 24/251 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G V  A K+FDEM QP+ V+  +++T   R +D+  A  +F  M    RN  + + 
Sbjct: 318 YGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKM--LVRNHTSWNV 375

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--- 120
           M+ GY+KAG ++ A+++F E+   +  SW+++I G+      +E    F  + L+ +   
Sbjct: 376 MLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL-LRAEMRP 434

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N VS T V+  C+ +G           T+   +E++  + +            +   NA+
Sbjct: 435 NEVSLTGVLSACSQSGAFE-----FGKTLHGFVEKSGYSWI------------VSVNNAL 477

Query: 181 ITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           I  Y   GN+  A  +F  M + R++ +W +MI   A +G    A+++ N M +S  MP+
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPD 537

Query: 240 ETTCTSILTSC 250
           E +  S+L +C
Sbjct: 538 EISFISLLYAC 548


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/514 (30%), Positives = 251/514 (48%), Gaps = 57/514 (11%)

Query: 23  PDPVSCASMITVFLRNHDLPK------AEALFRAMPESQRNIVAESAMIDGYVKAGRVDE 76
           P P S A +   FL  H+  K      A+ +   +   Q N    + M+  Y  +G +D 
Sbjct: 75  PHPSSYAPIFQ-FLTRHNFIKLGQQAHAQIVLHGL---QPNAFLAAKMVAMYASSGDLDS 130

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD---------------RMPLKLKN 121
           A  VFD I   +   + S+I  Y +           +                +P  LK+
Sbjct: 131 AVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKS 190

Query: 122 VVSWTTVVLG-CAH-NGLIAKLEVISWT--TMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
               + V +G C H  GL   LE   +   ++     +  +   AR+ F +M  +D+ +W
Sbjct: 191 CADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASW 250

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ--SR 235
           NA+I  Y+  G +  A +LF  M  RN+ +W AMI  Y +NG    A+ L + M Q  S 
Sbjct: 251 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 310

Query: 236 FMPNETTCTSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKCTCHYVFW 285
             PN  T  S+L +C        G   +  A+ + + L    +T+L     KC       
Sbjct: 311 MKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC------- 363

Query: 286 DWGFQLDVNSARLAFERL--EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                  +  AR  F+ +    K++++W  MI AY++HG G +   +F  ML++G +PD 
Sbjct: 364 -----YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDA 418

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TF+G+LS CSH+GL++ G   FN M   +  +PR EHY+C+ D+L RAG++ EA  ++S
Sbjct: 419 VTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELIS 478

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +M P +    V GALL ACR H ++ +A+    RL  L+P +SG YVL +N++A  G W+
Sbjct: 479 QM-PMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWE 537

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           E  ++R  ++ + +KK    S IE+ GK H  + 
Sbjct: 538 EVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMG 571



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 35/237 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A KLFD+M   D  S  ++I  +++  ++  AE LF  M    RNIV+ +AMI G
Sbjct: 230 GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERM--EHRNIVSWTAMISG 287

Query: 68  YVKAGRVDEARKVFDEIYEG------NVYSWTSLISGYFKARQVDEGRRLFD---RMPLK 118
           Y + G  ++A  +FDE+ +       N  +  S++    ++  ++ GRR+ D    + L 
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           L + V         A  G+ AK   +     C  +             +    K+++AWN
Sbjct: 348 LNSSVQ-------TALAGMYAKCYSLVEARCCFDM-------------IAQNGKNLIAWN 387

Query: 179 AMITAYVDAGNMAQASELFNLM----PQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            MITAY   G   +A  +F  M     Q +  T+  ++   + +G   A +   N M
Sbjct: 388 TMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDM 444


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 227/429 (52%), Gaps = 45/429 (10%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           +AG +  AR +F+ +   +V SW S+++G  KA  +DE   +FD+MP    NV SW  +V
Sbjct: 133 RAGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPET--NVASWNALV 190

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
            G    G +A+                     A+E F +MP ++ V+W  MI+ Y  AG+
Sbjct: 191 SGFMAQGHLAQ---------------------AQELFERMPTRNNVSWITMISGYAKAGD 229

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSIL 247
           +  A+ LF+ M  ++++ WNAMI  YA+NG    A+ + N M +     +PNE T +S++
Sbjct: 230 VQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVI 289

Query: 248 TSCEGM--------LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           ++C  +        +EN + + + + L     T+L    T      D  F L        
Sbjct: 290 SACSQLGDLRFGLWVENFMGY-VGVDLDDHLRTALVDLYTKSGRM-DRAFDL-------- 339

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  L ++DVVS++AMI+    HG   +   LF  M K+   P+ +TFVG+LS  SHAGL+
Sbjct: 340 FRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHAGLL 399

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E+ R  F  M+  Y   P  EHY+ + DIL R G+++EA ++V ++P    D  V GALL
Sbjct: 400 EEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLEEAFQLVMQIPVCP-DASVWGALL 458

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
            ACRLH ++ + + +  +  EL+P  SG Y+L  N++A   +WD+   +RK M ER + K
Sbjct: 459 LACRLHNNIELGEVVASKCFELEPQESGYYILLGNIYAQAKKWDKVKGLRKMMAERGLSK 518

Query: 479 VASFSQIEV 487
               S + V
Sbjct: 519 TPGSSWVHV 527



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 27/256 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G + EA ++FD+M + +  S  ++++ F+    L +A+ LF  MP   RN V+   MI 
Sbjct: 165 AGHLDEAIEMFDQMPETNVASWNALVSGFMAQGHLAQAQELFERMP--TRNNVSWITMIS 222

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-----LKN 121
           GY KAG V  A  +FD +   ++Y+W ++IS Y +     E   +F+RM LK     + N
Sbjct: 223 GYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRM-LKPHIWVVPN 281

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             ++++V+  C+  G    L    W     G             +V +   D +   A++
Sbjct: 282 EKTFSSVISACSQLG---DLRFGLWVENFMG-------------YVGVDLDDHLR-TALV 324

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y  +G M +A +LF  +  R+V +++AMI     +G    A+ L   M ++R  PN  
Sbjct: 325 DLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAV 384

Query: 242 TCTSILT--SCEGMLE 255
           T   +L+  S  G+LE
Sbjct: 385 TFVGLLSAYSHAGLLE 400



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 61/264 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G V+ A  LFD M   D  +  +MI+ + +N    +A  +F  M +    +V  
Sbjct: 222 SGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPN 281

Query: 62  ---------------------------------------SAMIDGYVKAGRVDEARKVFD 82
                                                  +A++D Y K+GR+D A  +F 
Sbjct: 282 EKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFR 341

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAK 140
            +   +V S++++I G     +++E   LF  M       N V++  ++   +H GL+ +
Sbjct: 342 GLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEE 401

Query: 141 LEVI---------------SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAY 184
                               +T M   L R    + A +  +Q+P   D   W A++ A 
Sbjct: 402 ARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGALLLAC 461

Query: 185 VDAGNM----AQASELFNLMPQRN 204
               N+      AS+ F L PQ +
Sbjct: 462 RLHNNIELGEVVASKCFELEPQES 485


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 254/504 (50%), Gaps = 57/504 (11%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAESAMIDGY 68
           + + ++FD + +P+      MI V + N++  KA  L+  M     + N     A++   
Sbjct: 88  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKAC 147

Query: 69  VKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
             AG V E  +V   + +    G+ +  +S I  Y    ++ E RR+ D           
Sbjct: 148 SDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG-------- 199

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITA 183
                          +++ + W  M  G  R    + ARE F  MP++ +++ WNAMI+ 
Sbjct: 200 --------------GEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISG 245

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +   G +  A E F+ M +R+  +W+AMID Y + G    A+++ + M + +  P +   
Sbjct: 246 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 305

Query: 244 TSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKCTCHYVFWDWGFQLDV 293
            S+L++C       +G   +  A   +I+L     TSL     KC    + W+       
Sbjct: 306 PSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE------- 358

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
                 FE++  K+V SW AMI   + HG       LF++M      P+EITFVGVL+ C
Sbjct: 359 -----VFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNAC 410

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H GLV+KG   FN M + YG +P+ EHY C+ D+L RAG + EA +VVS +P  E    
Sbjct: 411 AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT-EPTPA 469

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V GALLGACR HG+V + + +G+ L+EL+P +SG Y L +N++A  G W+E  +VRK M 
Sbjct: 470 VWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMK 529

Query: 473 ERRVKKVASFSQIEV-KGKDHTLL 495
           ER +K     S I++ +G+ H  +
Sbjct: 530 ERGIKTTPGTSIIDLGRGEVHKFI 553



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
           P G + +   L  ++      T CT+ L   +       AHAL +R G  Q++ +     
Sbjct: 20  PNGHSTETSKLSHKAILHLLNTQCTTSLHHLKQ------AHALILRTGHLQDSYIAGSLV 73

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y        L   S+   F+ +   +V  W  MI     +   F+   L+  M+ +  
Sbjct: 74  KSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF 133

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P++ T+  VL  CS AG+V +G +    + + +G        S    +    G++ EA 
Sbjct: 134 RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEAR 192

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           R++      E D V   A++      G+V  A      L E  P  S
Sbjct: 193 RILDDKGG-EVDAVCWNAMIDGYLRFGEVEAA----RELFEGMPDRS 234


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 257/501 (51%), Gaps = 36/501 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D +  +S+  ++L+   +  A  LF  MP+  R++V  SAMI GY + G V+EA+++F E
Sbjct: 138 DSIVASSLTHMYLKCDRILDARKLFDRMPD--RDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 84  IYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLK------------LKNVVSWTT 127
           +  G    N+ SW  +++G+      DE   +F  M ++            L  V     
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLED 255

Query: 128 VVLGCAHNGLIAKLEVIS----WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           VV+G   +G + K  + S     + M     +    K     F ++   +I + NA +T 
Sbjct: 256 VVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTG 315

Query: 184 YVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
               G +  A E+FN    +    NV TW ++I   ++NG +  A++L   M      PN
Sbjct: 316 LSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375

Query: 240 ETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S++ +C     ++     H  ++R G   +  +       Y          +  A
Sbjct: 376 AVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCG-----RIQLA 430

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+++ A ++VSW A++  Y+ HG   +   +F  ML+SG KPD +TF  VLS C+  
Sbjct: 431 RRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQN 490

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL E+G + +N MS  +G +P+ EHY+CL  +L R G+++EA  ++ +M P E D  V G
Sbjct: 491 GLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM-PFEPDACVWG 549

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL +CR+H ++ + +   E+L  L+P++ G Y+L +N++A++G WDE  ++R+ M+ + 
Sbjct: 550 ALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKG 609

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           ++K   +S IEV  K H LLA
Sbjct: 610 LRKNPGYSWIEVGHKVHMLLA 630



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 149/346 (43%), Gaps = 39/346 (11%)

Query: 178 NAMITAYVDAGNMAQASELFNL---MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
            ++++ Y +A +++       L   +P   +++++++I  +AR+      +   + +   
Sbjct: 39  TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98

Query: 235 RFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
           R +P+     S + SC  +         HA A   GF  ++ +    T  Y+  D     
Sbjct: 99  RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCD----- 153

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            +  AR  F+R+  +DVV W+AMI  YS  G   +   LF  M   G +P+ +++ G+L+
Sbjct: 154 RILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLA 213

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--- 408
              + G  ++    F +M    GF P     SC   +L   G +++   VV     H   
Sbjct: 214 GFGNNGFYDEAVGMFRMM-LVQGFWPDGSTVSC---VLPAVGCLED---VVVGAQVHGYV 266

Query: 409 -----ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV--LSAN--VHAAR 459
                  D  V+ A+L      G V+    + + + E++  S  A++  LS N  V  A 
Sbjct: 267 IKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTAL 326

Query: 460 GEWDEFAQVRKKMERRV----KKVASFSQIEVKGKDHTLLAPMREM 501
             +++F    +KME  V      +AS SQ    GKD   L   R+M
Sbjct: 327 EVFNKFKD--QKMELNVVTWTSIIASCSQ---NGKDLEALELFRDM 367



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 58/254 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G VKE +++FDE+ + +                                 I + +A
Sbjct: 285 YGKCGCVKEMSRVFDEVEEME---------------------------------IGSLNA 311

Query: 64  MIDGYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK- 118
            + G  + G VD A +VF    D+  E NV +WTS+I+   +  +  E   LF  M    
Sbjct: 312 FLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYG 371

Query: 119 -LKNVVSWTTVVLGCAH-NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              N V+  +++  C + + L+   E+      C  L R                 D+  
Sbjct: 372 VEPNAVTIPSLIPACGNISALMHGKEI-----HCFSLRRGIF-------------DDVYV 413

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I  Y   G +  A   F+ M   N+ +WNA++  YA +G     M++ ++M QS  
Sbjct: 414 GSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ 473

Query: 237 MPNETTCTSILTSC 250
            P+  T T +L++C
Sbjct: 474 KPDLVTFTCVLSAC 487



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF-ERLEAKDVVSWTAMILA 317
           AHAL +RL    +T LT   T    F+     L      L     L    + S++++I A
Sbjct: 22  AHALILRLNLFSDTQLT---TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHA 78

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           ++   H   V   F+ +      PD       +  C+    ++ G++  +  + A GF  
Sbjct: 79  FARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQ-LHAFAAASGFLT 137

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRL 424
            +   S L  +  +  ++ +A ++  +MP  +RD VV  A++ G  RL
Sbjct: 138 DSIVASSLTHMYLKCDRILDARKLFDRMP--DRDVVVWSAMIAGYSRL 183


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/517 (30%), Positives = 256/517 (49%), Gaps = 39/517 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAES----A 63
           G + +A  +FD M   D +S  +MI    +N    +A  +F  M   Q   V +S    +
Sbjct: 283 GSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM--QQEGFVPDSTTYLS 340

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYS----WTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +++ +V  G  +  ++V     E  + S     ++ +  Y +   +D+ + +FD+  L +
Sbjct: 341 LLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDK--LAV 398

Query: 120 KNVVSWTTVVLG-----CAHNGLIAKLEV------------ISWTTMCTGLERNAMTKLA 162
           +NV +W  ++ G     C    L   L++            ++  +   G E     K  
Sbjct: 399 RNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEV 458

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             Y +     D+   NA++  Y   GN   A ++F+ M +RNV TW  MI   A++G   
Sbjct: 459 HSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGH 518

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENML-AHALAIRLGFEQETSLTYKCT 279
            A  L   M +   +P+ TT  SIL++C   G LE +   H+ A+  G   +  +     
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALV 578

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          V+ AR  F+ +  +DV SWT MI   + HG G     LF +M   G 
Sbjct: 579 HMYAKCG-----SVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGF 633

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           KP+  +FV VLS CSHAGLV++GR+ F  +++ YG +P  EHY+C+ D+L RAGQ++EA 
Sbjct: 634 KPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAK 693

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
             +  MP    D    GALLGAC  +G++ MA++  +  ++L+P S+  YVL +N++AA 
Sbjct: 694 HFILNMPIEPGD-APWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAAT 752

Query: 460 GEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           G W++   VR  M+RR ++K    S IEV  + H+ +
Sbjct: 753 GNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFV 789



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 35/357 (9%)

Query: 8   GKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G  ++A K++ +M     QP+ ++  S++        L   + +   + +S  Q ++  E
Sbjct: 9   GYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVE 68

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+++ YVK G +D+A+ +FD++ E NV SWT +I G     +  E    F +M  +  +
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  ++ +++   A  G       + W         NA   L           D+   NA
Sbjct: 129 PNSYTYVSILNANASAG------ALEWVKEVHSHAVNAGLAL-----------DLRVGNA 171

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y  +G++  A  +F+ M +R++++W  MI   A++G    A  L   M +   +PN
Sbjct: 172 LVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPN 231

Query: 240 ETTCTSILT----SCEGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            TT  SIL     +  G LE +   H  A + GF  +  +       Y          ++
Sbjct: 232 LTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCG-----SID 286

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ARL F+ +  +DV+SW AMI   + +G G + F +F +M + G  PD  T++ +L+
Sbjct: 287 DARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 16/305 (5%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+    A++  YV  G++  A  +F+ M +RNV +W  MI   A  G    A      M 
Sbjct: 64  DVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQ 123

Query: 233 QSRFMPNETTCTSILTS--CEGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +  F+PN  T  SIL +    G LE +   H+ A+  G   +  +       Y       
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMY-----AK 178

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              ++ AR+ F+ +  +D+ SWT MI   + HG G + F LF +M + G  P+  T++ +
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSI 238

Query: 350 L--SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           L  S  +  G +E  ++      +A GF       + L  +  + G + +A  V   M  
Sbjct: 239 LNASAITSTGALEWVKEVHKHAGKA-GFISDLRVGNALIHMYAKCGSIDDARLVFDGMC- 296

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSSSGAYVLSANVHAARGEWDEF 465
            +RD +   A++G    +G    A  I  ++ +    P S+  Y+   N H + G W+  
Sbjct: 297 -DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST-TYLSLLNTHVSTGAWEWV 354

Query: 466 AQVRK 470
            +V K
Sbjct: 355 KEVHK 359



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 11/219 (5%)

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLG 267
           MI  YA  G    AMK+ + M +    PNE T  SIL +C   +        HA  I+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F+ +  +       YV         ++ A+L F+++  ++V+SWT MI   +++G G + 
Sbjct: 61  FQSDVRVETALVNMYVKCG-----SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
           F  F +M + G  P+  T+V +L+  + AG +E  ++  +    A G        + L  
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVH 174

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  ++G + +A  V   M   ERD      ++G    HG
Sbjct: 175 MYAKSGSIDDARVVFDGMV--ERDIFSWTVMIGGLAQHG 211


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 210/404 (51%), Gaps = 62/404 (15%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S++I  Y     +  A+++F+   + ++ SW ++I GY K  ++   R +FDRM  +   
Sbjct: 38  SSLIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCR--- 94

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               +VISW TM  G         A+  F +MP +++V+ N+M+
Sbjct: 95  --------------------DVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSXNSML 134

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             +V  GN+  A  LF+ MP R+V +WN+M+  YA+ G    A+ L + M      P+E 
Sbjct: 135 XGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEA 194

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS------ 295
           T  S+L++C        AH  A+  G    T +               +++VNS      
Sbjct: 195 TVVSLLSAC--------AHLGALDKGLHLHTYINDN------------RIEVNSIVGTAL 234

Query: 296 ------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                       A   F  +E+KDV++W  +I   +  GH  +  +LF  M ++G +P++
Sbjct: 235 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPND 294

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFV +LS CSHAG+V++G+K  + MS +YG +P+ EHY C+ D+L RAG ++EAM ++ 
Sbjct: 295 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIG 354

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
            M P E +   LGALLG CR+HG+  + + +G+RLI LQP  SG
Sbjct: 355 TM-PMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSG 397



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 23/252 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A  +FD M   D +S  +MI  +     + +A+ LF  MPE  RN+V+ ++M+ G
Sbjct: 79  GEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE--RNLVSXNSMLXG 136

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           +VK G V++A  +F E+   +V SW S+++ Y +  + +E   LFD+M          T 
Sbjct: 137 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATV 196

Query: 128 VVL--GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
           V L   CAH G + K           GL  +      R         + +   A++  Y 
Sbjct: 197 VSLLSACAHLGALDK-----------GLHLHTYINDNR------IEVNSIVGTALVDMYA 239

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G ++ A+++FN M  ++V  WN +I   A  G    A +L   M ++   PN+ T  +
Sbjct: 240 KCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVA 299

Query: 246 ILTSCE--GMLE 255
           +L++C   GM++
Sbjct: 300 MLSACSHAGMVD 311


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 230/438 (52%), Gaps = 40/438 (9%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++V  ++ +D Y K   +  ARKVF E+ E N  SWT+L+  Y K+ +++E + +FD M
Sbjct: 143 KDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLM 202

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P +  N+ SW  +V     +GL+   ++++                A++ F +MP +DI+
Sbjct: 203 PER--NLGSWNALV-----DGLVKSGDLVN----------------AKKLFDEMPKRDII 239

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           ++ +MI  Y   G+M  A +LF      +V  W+A+I  YA+NG    A K+ + M    
Sbjct: 240 SYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKN 299

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             P+E     ++++C  M    L   +   L   Q  +   K + HYV       +D+N+
Sbjct: 300 VKPDEFIMVGLMSACSQMGCFELCEKVDSYL--HQRMN---KFSSHYVVPAL---IDMNA 351

Query: 296 -------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                  A   FE +  +D+VS+ +M+   + HG G +  RLF +M+  G  PDE+ F  
Sbjct: 352 KCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTV 411

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  C  + LVE+G + F LM + Y      +HYSC+ ++L R G++KEA  ++  M P 
Sbjct: 412 ILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSM-PF 470

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E      G+LLG C LHG+  +A+ +   L EL+P S+G+YVL +N++AA   W + A +
Sbjct: 471 EAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHL 530

Query: 469 RKKM-ERRVKKVASFSQI 485
           R KM E  + K+   S I
Sbjct: 531 RDKMNENGITKICGRSWI 548



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 170/381 (44%), Gaps = 66/381 (17%)

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLKNVVSWT 126
           VF+ +     Y W  LI GY       E   +  RM             PL +K   +  
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 127 TVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            V +G + +GL+ ++    +V+  T+      +      AR+ F +MP ++ V+W A++ 
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           AYV +G + +A  +F+LMP+RN+ +WNA++D   ++G    A KL + M +   +    +
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDII----S 240

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
            TS++                   G+ +                     D+ SAR  FE 
Sbjct: 241 YTSMID------------------GYAKGG-------------------DMVSARDLFEE 263

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
               DV +W+A+IL Y+ +G   + F++F+ M     KPDE   VG++S CS  G  E  
Sbjct: 264 ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELC 323

Query: 363 RKTFN-LMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            K  + L  R   F   + HY    L D+  + G +  A ++  +MP  +RD V   +++
Sbjct: 324 EKVDSYLHQRMNKF---SSHYVVPALIDMNAKCGHMDRAAKLFEEMP--QRDLVSYCSMM 378

Query: 420 GACRLHGDVRMADYIGERLIE 440
               +HG    A  + E++++
Sbjct: 379 EGMAIHGCGSEAIRLFEKMVD 399



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 144/267 (53%), Gaps = 30/267 (11%)

Query: 8   GKVKE---ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GK K+   A K+F EM + + VS  +++  ++++ +L +A+++F  MPE  RN+ + +A+
Sbjct: 156 GKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPE--RNLGSWNAL 213

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +DG VK+G +  A+K+FDE+ + ++ S+TS+I GY K   +   R LF+    +  +V +
Sbjct: 214 VDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEA--RGVDVRA 271

Query: 125 WTTVVLGCAHNG-----------LIAK------LEVISWTTMCTGLERNAMTKLAREYFV 167
           W+ ++LG A NG           + AK        ++   + C+ +    + +    Y  
Sbjct: 272 WSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLH 331

Query: 168 QMPNKDIVAWNAMITAYVD----AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Q  NK   + + ++ A +D     G+M +A++LF  MPQR++ ++ +M++  A +G    
Sbjct: 332 QRMNK--FSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSE 389

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A++L   M     +P+E   T IL  C
Sbjct: 390 AIRLFEKMVDEGIVPDEVAFTVILKVC 416



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 12/242 (4%)

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M Q    P+  +  ++   C+  +     HA  IR G EQ+ +L                
Sbjct: 1   MIQRLSHPSLLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSS----SS 56

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGV 349
             ++ +   FER+ +     W  +I  YSN    F+   +  RM+++G  +PDE TF  V
Sbjct: 57  SSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLV 116

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  CS+ G V  G     L+ R  GF       +   D   +   +  A +V  +MP  E
Sbjct: 117 MKVCSNNGQVRVGSSVHGLVLRI-GFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMP--E 173

Query: 410 RDHVVLGALLGACRLHGDVR----MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           R+ V   AL+ A    G++     M D + ER +    +     V S ++  A+  +DE 
Sbjct: 174 RNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEM 233

Query: 466 AQ 467
            +
Sbjct: 234 PK 235


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 252/509 (49%), Gaps = 34/509 (6%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +++     FD +S P  +   S ++      +L      F     +  +   E+ ++D Y
Sbjct: 104 RIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG----FAFKIATLSDPFVETGLMDMY 159

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS---- 124
              GR++ AR VFDE+ + +V +W ++I  Y +   +DE  +LF+ M  K  NV+     
Sbjct: 160 AACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEM--KDSNVMPDEMI 217

Query: 125 WTTVVLGCAHNG-----------LI---AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
              +V  C   G           LI    +++    T + T         +A E+F +M 
Sbjct: 218 LCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMS 277

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +++    AM++ Y  AG +  A  +F+    +++  W  MI  YA +     A+++   
Sbjct: 278 VRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEE 337

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLENM-LAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M  S   P+  T  S++++C   G L+     H      G E    +       Y     
Sbjct: 338 MCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCG- 396

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                +++AR  FE++  ++VVSW++MI A++ HG       LFA+M +   +P+E+TFV
Sbjct: 397 ----GLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFV 452

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVL  CSH+GLVE+G+K F  M+  Y   P+ EHY C+ D+  RA  ++EA+ V+  M P
Sbjct: 453 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESM-P 511

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
              + V+ G+L+ ACR+HG++ + +   +R+++L+P   GA VL +N++A    WD    
Sbjct: 512 MAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRI 571

Query: 468 VRKKME-RRVKKVASFSQIEVKGKDHTLL 495
           +R  ME ++V K    S+I++ GK H  L
Sbjct: 572 IRWIMEKKKVFKEKGLSRIDLNGKSHEFL 600



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 167/382 (43%), Gaps = 73/382 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR------- 56
           +   G++  A  +FDEMSQ D V+  +MI  + R   L +A  LF  M +S         
Sbjct: 159 YAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMIL 218

Query: 57  -NIVAE-----------------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
            NIV+                              +A++  Y  AG +D A + F ++  
Sbjct: 219 CNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSV 278

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            N++  T+++SGY KA ++D+ R +FD+   ++K++V WTT++   A +    +   +  
Sbjct: 279 RNLFVSTAMVSGYSKAGRLDDARVIFDQT--EMKDLVCWTTMISAYAESDHPQEALRVFE 336

Query: 147 TTMCTGLERNAMTKLAR-EYFVQMPNKDIVAW-----------------NAMITAYVDAG 188
              C+G++ + +T L+     V +   D   W                 NA+I  Y   G
Sbjct: 337 EMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCG 396

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A ++F  MP RNV +W++MI+ +A +G    ++ L   M Q    PNE T   +L 
Sbjct: 397 GLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLY 456

Query: 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLE 304
            C        +H+  +  G +   S+T +         +G  +D+    N  R A E +E
Sbjct: 457 GC--------SHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIE 508

Query: 305 ----AKDVVSWTAMILAYSNHG 322
               A +VV W +++ A   HG
Sbjct: 509 SMPMAPNVVIWGSLMSACRVHG 530


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 262/517 (50%), Gaps = 53/517 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A+ +F  M    R+I + +AMI  +++ G++D A   F+++ E ++
Sbjct: 186 SLLNMYAKCGDPMMAKFVFDRMV--VRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 90  YSWTSLISGY----FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH----------- 134
            +W S+ISG+    +  R +D   ++  R  L   +  +  +V+  CA+           
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKML-RDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 135 ----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD--IVAWNAMIT 182
                     +G++    +IS  + C G+E       AR    Q   KD  I  + A++ 
Sbjct: 303 SHIVTTGFDISGIVLN-ALISMYSRCGGVET------ARRLIEQRGTKDLKIEGFTALLD 355

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+M QA  +F  +  R+V  W AMI  Y ++G  G A+ L   M      PN  T
Sbjct: 356 GYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT 415

Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             ++L+    +         H  A++ G     S++      Y         ++ SA  A
Sbjct: 416 LAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG-----NITSASRA 470

Query: 300 FERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           F+ +   +D VSWT+MI+A + HGH  +   LF  ML  G +PD IT+VGV S C+HAGL
Sbjct: 471 FDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V +GR+ F++M       P   HY+C+ D+  RAG ++EA   + KMP  E D V  G+L
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI-EPDVVTWGSL 589

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVK 477
           L ACR+H ++ +     ERL+ L+P +SGAY   AN+++A G+W+E A++RK M + RVK
Sbjct: 590 LSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVK 649

Query: 478 KVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEV 509
           K   FS IEVK K H         P +   Y+ +K++
Sbjct: 650 KEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKI 686



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 217/538 (40%), Gaps = 108/538 (20%)

Query: 20  MSQPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR--------NIVAESAMIDGYV 69
           M  P P+S ++++ +   L    + K+   F A     R        ++   + +++ Y 
Sbjct: 1   MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           K G    ARK+FDE+     +SW +++S Y K   +D     FD++P   ++ VSWTT++
Sbjct: 61  KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP--QRDSVSWTTMI 118

Query: 130 LGCAHNGLIAK------------LEVISWT----------TMCT-------------GLE 154
           +G  + G   K            +E   +T          T C              GL 
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178

Query: 155 RNAMTK--------------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            N                  +A+  F +M  +DI +WNAMI  ++  G M  A   F  M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSC---EGMLEN 256
            +R++ TWN+MI  + + G +  A+ + + M +   + P+  T  S+L++C   E +   
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298

Query: 257 MLAHALAIRLGF---------------------------EQETSLTYKCTCHYVFWDWGF 289
              H+  +  GF                           EQ  +   K        D   
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358

Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           +L D+N A+  F  L+ +DVV+WTAMI+ Y  HG   +   LF  M+  G +P+  T   
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-----CLADILRRAGQVKEAMRVVS 403
           +LS  S    +  G++      ++       E YS      L  +  +AG +  A R   
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKS------GEIYSVSVSNALITMYAKAGNITSASRAFD 472

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSS-SGAYVLSANVHAA 458
            +   ERD V   +++ A   HG    A  + E ++   L+P   +   V SA  HA 
Sbjct: 473 -LIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 31/330 (9%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR+ F +MP +   +WN +++AY   G+M    E F+ +PQR+  +W  MI  Y   G  
Sbjct: 68  ARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQY 127

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLT--- 275
             A++++  M +    P + T T++L S      M      H+  ++LG     S++   
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187

Query: 276 ----YKC----TCHYVF----------WD--WGFQLDVNSARLA---FERLEAKDVVSWT 312
                KC       +VF          W+      + V    LA   FE++  +D+V+W 
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 313 AMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           +MI  ++  G+  +   +F++ML+ S   PD  T   VLS C++   +  G++  + +  
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             GF       + L  +  R G V+ A R++ +    +       ALL      GD+  A
Sbjct: 308 T-GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGE 461
             I   L +    +  A ++    H + GE
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGE 396


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 234/431 (54%), Gaps = 21/431 (4%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR++  +I   +  +W +L+    +   +   RRLFD MP +  +VVS+ ++V G    G
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPER--DVVSYNSMVAGYVAEG 202

Query: 137 LIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
            +A          + +V++W +M +G  R+   + AR+ F  MP +D+V+WN+M+  Y  
Sbjct: 203 DLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQ 262

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTS 245
           AG++  A  +F+ MP+R++ +WN ++  YA+       + L ++M  +   +PNE T  S
Sbjct: 263 AGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVS 322

Query: 246 ILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           +LT+C   G LE     H L           +    T   ++   G    + +AR  F  
Sbjct: 323 VLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGV---METAREIFNS 379

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  K V SW +MI+ Y  HG   +   LF  M + G +P+E TF+ VLS C+H GLV +G
Sbjct: 380 MGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEG 439

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
              F+ M R Y  +P++EH+ C+ D+L RAG ++++  ++  +   +    + G L+ A 
Sbjct: 440 WWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENL-QGKVSEALWGILMSAS 498

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVAS 481
           +   ++++ +++G++LIE++P+  G Y+L +N++AA G WD+  +VRK ME + V+K A 
Sbjct: 499 QTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAG 558

Query: 482 FSQIEVKGKDH 492
            S +  +   H
Sbjct: 559 LSLVGSREGGH 569



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 136/265 (51%), Gaps = 27/265 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LFDEM + D VS  SM+  ++   DL  A  LF  M  ++R++V  ++MI G
Sbjct: 171 GLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGM--ARRDVVTWNSMISG 228

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G ++ ARK+FD + E +V SW S++ GY +A  V+  R +FD MP   +++VSW  
Sbjct: 229 YSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMP--KRSIVSWNV 286

Query: 128 V------------------VLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREY 165
           +                  V+    N +  +   +S  T C  L    +   +  L +E 
Sbjct: 287 ILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQER 346

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           + ++   D++    ++T Y   G M  A E+FN M +++V +WN+MI  Y  +G    A+
Sbjct: 347 WDRL-VPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKAL 405

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
           +L   M +    PNETT   +L+SC
Sbjct: 406 ELFLEMERDGPRPNETTFICVLSSC 430


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 161/549 (29%), Positives = 270/549 (49%), Gaps = 80/549 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG--------------- 72
           C ++I ++L++  +  AEA+F +M    R+ V  + MI GY   G               
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSM--VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLA 300

Query: 73  RVDEARKVF----------------DEIYEG---NVYSW-----TSLISGYFKARQVDEG 108
            V  +R VF                 +++ G   N Y +     T+L+  Y K   VDE 
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLE 154
            +LF  M     NVV+WT ++ G   N        L  ++          +++T+  G  
Sbjct: 361 FKLFS-MADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKP 419

Query: 155 RNAMTKL----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            + +++L     + Y+ ++P+       A++ AYV  GN+ +++ +F  +P +++  W+A
Sbjct: 420 SSLLSQLHAQIIKAYYEKVPS----VATALLDAYVKTGNVVESARVFYSIPAKDIVAWSA 475

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRL 266
           M+   A+      AM++   + +    PNE T +S++ +C      +      HA A++ 
Sbjct: 476 MLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS 535

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G  +  +L   C    +   +  + ++ SA   F R E +D+VSW +MI  Y  HG   +
Sbjct: 536 G--KSNAL---CVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKK 590

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  M   G   D++TF+GVL+ C+HAGLVE+G K FN+M + Y    + EHYSC+ 
Sbjct: 591 ALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMV 650

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+  RAG   +AM +++ M P      +   LL ACR+H ++ +     E+L+ LQP+ +
Sbjct: 651 DLYSRAGMFDKAMDIINGM-PFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMRE 500
             YVL +N+HA  G W+E A VRK M ER+VKK A  S IE+K +  + LA     P  +
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 501 MGYVVLKEV 509
           + Y  L+E+
Sbjct: 770 LVYAKLEEL 778



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 163/381 (42%), Gaps = 57/381 (14%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            ++   ++++D Y+K    ++ R +FDE+   NV SWTSL+SGY +    DE   L ++M
Sbjct: 137 EDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM 196

Query: 116 PLKLKNVVSWT-TVVLGCAHNGLIAKLEVISWTTMCTGLERNAM-TKLAREYFVQMPNKD 173
            ++  N   +T   VLG      +A   +I       G++ +AM  K   E+        
Sbjct: 197 QMEGVNPNGFTFATVLGA-----LADESIIE-----GGVQVHAMIVKNGFEF-------T 239

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               NA+I  Y+ +  +  A  +F+ M  R+  TWN MI  YA  G      ++ + M  
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +    + T   + L  C                  ++E + T +  C  V   + F  D+
Sbjct: 300 AGVKLSRTVFCTALKLCSQ----------------QRELNFTKQLHCGVVKNGYEFAQDI 343

Query: 294 NSARL-----------AFERLE----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            +A +           AF+       A +VV+WTAMI  +  + +  +   LF +M + G
Sbjct: 344 RTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG 403

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P+  T+  VL+    + L +   +      +AY ++      + L D   + G V E+
Sbjct: 404 VRPNHFTYSTVLAGKPSSLLSQLHAQII----KAY-YEKVPSVATALLDAYVKTGNVVES 458

Query: 399 MRVVSKMPPHERDHVVLGALL 419
            RV   +P   +D V   A+L
Sbjct: 459 ARVFYSIPA--KDIVAWSAML 477



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 11/232 (4%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF+  P +++  +N ++  ++RN  +  A+ L   +  S    +  T +  L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 253 MLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           + + ++    H  +++ GF ++ S+       Y+  +     D    R  F+ +  K+VV
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-----DFEDGRGIFDEMGIKNVV 171

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SWT+++  Y+ +G   +V  L  +M   G  P+  TF  VL   +   ++E G +   ++
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            +  GF+      + L  +  ++  V +A  V   M    RD V    ++G 
Sbjct: 232 VKN-GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV--RDSVTWNIMIGG 280



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 117/296 (39%), Gaps = 69/296 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------------ 48
           TG V E+ ++F  +   D V+ ++M+T   +  D  KA  +F                  
Sbjct: 452 TGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSV 511

Query: 49  -------------------RAMPESQRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                               A+   + N +   SA++  Y K G ++ A KVF    E +
Sbjct: 512 INACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD 571

Query: 89  VYSWTSLISGYFK---ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + SW S+I+GY +   A++  E  ++     L L + V++  V+  C H GL+ + E   
Sbjct: 572 IVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD-VTFIGVLTACTHAGLVEEGE--- 627

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP---Q 202
                          + ++Y +   +K    ++ M+  Y  AG   +A ++ N MP    
Sbjct: 628 ----------KYFNIMIKDYHI---DKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 203 RNVWTWNAMIDRYARNGPEG--AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
             +W       R  RN   G  AA KL++L       PN+     +L++   +  N
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSL------QPNDAVGYVLLSNIHAVAGN 724



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 28/206 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G ++ A K+F    + D VS  SMIT + ++ D  KA  +F+ M      +  V    ++
Sbjct: 555 GNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 66  DGYVKAGRVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                AG V+E  K F     D   +     ++ ++  Y +A   D+   + + MP    
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN-AMTKLAREYFVQMPNKDIVAWNA 179
             + W T++  C                    + RN  + KLA E  V +   D V +  
Sbjct: 675 PTI-WRTLLAACR-------------------VHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 180 MITAYVDAGNMAQASELFNLMPQRNV 205
           +   +  AGN  + + +  LM +R V
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKV 740


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/549 (29%), Positives = 270/549 (49%), Gaps = 80/549 (14%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG--------------- 72
           C ++I ++L++  +  AEA+F +M    R+ V  + MI GY   G               
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSM--VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLA 300

Query: 73  RVDEARKVF----------------DEIYEG---NVYSW-----TSLISGYFKARQVDEG 108
            V  +R VF                 +++ G   N Y +     T+L+  Y K   VDE 
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLE 154
            +LF  M     NVV+WT ++ G   N        L  ++          +++T+  G  
Sbjct: 361 FKLFS-MADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKP 419

Query: 155 RNAMTKL----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            + +++L     + Y+ ++P+       A++ AYV  GN+ +++ +F  +P +++  W+A
Sbjct: 420 SSLLSQLHAQIIKAYYEKVPS----VATALLDAYVKTGNVVESARVFYSIPAKDIVAWSA 475

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRL 266
           M+   A+      AM++   + +    PNE T +S++ +C      +      HA A++ 
Sbjct: 476 MLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS 535

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G  +  +L   C    +   +  + ++ SA   F R E +D+VSW +MI  Y  HG   +
Sbjct: 536 G--KSNAL---CVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKK 590

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +F  M   G   D++TF+GVL+ C+HAGLVE+G K FN+M + Y    + EHYSC+ 
Sbjct: 591 ALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMV 650

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+  RAG   +AM +++ M P      +   LL ACR+H ++ +     E+L+ LQP+ +
Sbjct: 651 DLYSRAGMFDKAMDIINGM-PFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMRE 500
             YVL +N+HA  G W+E A VRK M ER+VKK A  S IE+K +  + LA     P  +
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 501 MGYVVLKEV 509
           + Y  L+E+
Sbjct: 770 LVYAKLEEL 778



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 163/381 (42%), Gaps = 57/381 (14%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            ++   ++++D Y+K    ++ R +FDE+   NV SWTSL+SGY +    DE   L ++M
Sbjct: 137 EDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM 196

Query: 116 PLKLKNVVSWT-TVVLGCAHNGLIAKLEVISWTTMCTGLERNAM-TKLAREYFVQMPNKD 173
            ++  N   +T   VLG      +A   +I       G++ +AM  K   E+        
Sbjct: 197 QMEGVNPNGFTFATVLGA-----LADESIIE-----GGVQVHAMIVKNGFEF-------T 239

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               NA+I  Y+ +  +  A  +F+ M  R+  TWN MI  YA  G      ++ + M  
Sbjct: 240 TFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRL 299

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +    + T   + L  C                  ++E + T +  C  V   + F  D+
Sbjct: 300 AGVKLSRTVFCTALKLCSQ----------------QRELNFTKQLHCGVVKNGYEFAQDI 343

Query: 294 NSARL-----------AFERLE----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            +A +           AF+       A +VV+WTAMI  +  + +  +   LF +M + G
Sbjct: 344 RTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREG 403

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P+  T+  VL+    + L +   +      +AY ++      + L D   + G V E+
Sbjct: 404 VRPNHFTYSTVLAGKPSSLLSQLHAQII----KAY-YEKVPSVATALLDAYVKTGNVVES 458

Query: 399 MRVVSKMPPHERDHVVLGALL 419
            RV   +P   +D V   A+L
Sbjct: 459 ARVFYSIPA--KDIVAWSAML 477



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 11/232 (4%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF+  P +++  +N ++  ++RN  +  A+ L   +  S    +  T +  L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 253 MLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           + + ++    H  +++ GF ++ S+       Y+  +     D    R  F+ +  K+VV
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-----DFEDGRGIFDEMGIKNVV 171

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SWT+++  Y+ +G   +V  L  +M   G  P+  TF  VL   +   ++E G +   ++
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            +  GF+      + L  +  ++  V +A  V   M    RD V    ++G 
Sbjct: 232 VKN-GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV--RDSVTWNIMIGG 280



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 69/296 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------------ 48
           TG V E+ ++F  +   D V+ ++M+T   +  D  KA  +F                  
Sbjct: 452 TGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSV 511

Query: 49  -------------------RAMPESQRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                               A+   + N +   SA++  Y K G ++ A KVF    E +
Sbjct: 512 INACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD 571

Query: 89  VYSWTSLISGYFK---ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + SW S+I+GY +   A++  E  ++     L L + V++  V+  C H GL+ + E   
Sbjct: 572 IVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD-VTFIGVLTACTHAGLVEEGE--- 627

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP---Q 202
                          + ++Y +   +K I  ++ M+  Y  AG   +A ++ N MP    
Sbjct: 628 ----------KYFNIMIKDYHI---DKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 203 RNVWTWNAMIDRYARNGPEG--AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
             +W       R  RN   G  AA KL++L       PN+     +L++   +  N
Sbjct: 675 PTIWRTLLAACRVHRNLELGKLAAEKLVSL------QPNDAVGYVLLSNIHAVAGN 724



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 28/206 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G ++ A K+F    + D VS  SMIT + ++ D  KA  +F+ M      +  V    ++
Sbjct: 555 GNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 66  DGYVKAGRVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                AG V+E  K F     D   +  +  ++ ++  Y +A   D+   + + MP    
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN-AMTKLAREYFVQMPNKDIVAWNA 179
             + W T++  C                    + RN  + KLA E  V +   D V +  
Sbjct: 675 PTI-WRTLLAACR-------------------VHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 180 MITAYVDAGNMAQASELFNLMPQRNV 205
           +   +  AGN  + + +  LM +R V
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKV 740


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 234/431 (54%), Gaps = 21/431 (4%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR++  +I   +  +W +L+    +   +   RRLFD MP +  +VVS+ ++V G    G
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPER--DVVSYNSMVAGYVAEG 202

Query: 137 LIA----------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
            +A          + +V++W +M +G  R+   + AR+ F  MP +D+V+WN+M+  Y  
Sbjct: 203 DLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQ 262

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTS 245
           AG++  A  +F+ MP+R++ +WN ++  YA+       + L ++M  +   +PNE T  S
Sbjct: 263 AGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVS 322

Query: 246 ILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           +LT+C   G LE     H L           +    T   ++   G    + +AR  F  
Sbjct: 323 VLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGV---METAREIFNS 379

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  K V SW +MI+ Y  HG   +   LF  M + G +P+E TF+ VLS C+H GLV +G
Sbjct: 380 MGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEG 439

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
              F+ M R Y  +P++EH+ C+ D+L RAG ++++  ++  +   +    + G L+ A 
Sbjct: 440 WWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENL-QGKVSEALWGILMSAS 498

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVAS 481
           +   ++++ +++G++LIE++P+  G Y+L +N++AA G WD+  +VRK ME + V+K A 
Sbjct: 499 QTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAG 558

Query: 482 FSQIEVKGKDH 492
            S +  +   H
Sbjct: 559 LSLVGSREGGH 569



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 136/265 (51%), Gaps = 27/265 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LFDEM + D VS  SM+  ++   DL  A  LF  M  ++R++V  ++MI G
Sbjct: 171 GLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGM--ARRDVVTWNSMISG 228

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y + G ++ ARK+FD + E +V SW S++ GY +A  V+  R +FD MP   +++VSW  
Sbjct: 229 YSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMP--KRSIVSWNV 286

Query: 128 V------------------VLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREY 165
           +                  V+    N +  +   +S  T C  L    +   +  L +E 
Sbjct: 287 ILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQER 346

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           + ++   D++    ++T Y   G M  A E+FN M +++V +WN+MI  Y  +G    A+
Sbjct: 347 WDRL-VPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKAL 405

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
           +L   M +    PNETT   +L+SC
Sbjct: 406 ELFLEMERDGPRPNETTFICVLSSC 430


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 233/487 (47%), Gaps = 50/487 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + M+ GYV+ G V  AR VF+E+       W ++ISGY  +    E   LF RM L+   
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVP 291

Query: 122 V--VSWTTVVLGCAHNGLIAKLEVISW------------------TTMCTGLERNAMTKL 161
           +   ++T+V+  CA+ GL A  + +                      + T   +     +
Sbjct: 292 LDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAV 351

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F  M  KD+V+WN +++ YV++  + +A E+F  MP +N  +W  M+  Y   G  
Sbjct: 352 ARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFA 411

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKC 278
             A+KL N M      P + T    + +C   G L++    H   ++LGFE   S     
Sbjct: 412 EDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNAL 471

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          V  A L F  +   D VSW AMI A   HGHG +   LF RM+  G
Sbjct: 472 ITMYARCG-----AVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             PD I+F+ VL+ C+H+GLV++G + F  M R +G  P  +HY+ L D+L RAG++ EA
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             ++  M P E    +  A+L  CR  GD+ +  +  ++L ++ P   G Y+L +N ++A
Sbjct: 587 RDLIKTM-PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSA 645

Query: 459 RGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL--------------------AP 497
            G W + A+VRK M +R VKK    S IE   K H  L                    A 
Sbjct: 646 AGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAK 705

Query: 498 MREMGYV 504
           MR++GYV
Sbjct: 706 MRKLGYV 712



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 189/457 (41%), Gaps = 55/457 (12%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80
           + P PVS  S++  +     LP A + F A+P ++R+ V  +A+I  Y +A     A  V
Sbjct: 84  ADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAV 143

Query: 81  FDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           F  +        + YS+T+L+S          G  L +   + +++       VL     
Sbjct: 144 FRSLLASGSLRPDDYSFTALLSA---------GGHLPN---ISVRHCAQLHCSVLKSGAG 191

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
           G ++    +    M    E    T+ AR+   +MPNKD + W  M+  YV  G++  A  
Sbjct: 192 GALSVCNALVALYM--KCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARS 249

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-- 253
           +F  +  +    WNAMI  Y  +G    A +L   M   R   +E T TS+L++C  +  
Sbjct: 250 VFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGL 309

Query: 254 -LENMLAHALAIRL--GFEQETSL-------TYKCTC----------------HYVFWDW 287
                  H   IRL   F  E +L       T+   C                  V W+ 
Sbjct: 310 FAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNT 369

Query: 288 GFQLDVNSARL-----AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                V S+ L      FE +  K+ +SW  M+  Y + G      +LF +M     KP 
Sbjct: 370 ILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPC 429

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           + T+ G ++ C   G ++ G++    + +  GF+      + L  +  R G VKEA  + 
Sbjct: 430 DYTYAGAIAACGELGALKHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMF 488

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
             MP    D V   A++ A   HG  R A  + +R++
Sbjct: 489 LVMP--NIDSVSWNAMISALGQHGHGREALELFDRMV 523



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 25/203 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A ++FD M+  D VS  ++++ ++ +  L KA  +F  MP   +N ++   M+ G
Sbjct: 347 GNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP--YKNELSWMVMVSG 404

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           YV  G  ++A K+F+++   NV    Y++   I+   +   +  G++L         ++V
Sbjct: 405 YVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHG-------HIV 457

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                    A N LI            T   R    K A   F+ MPN D V+WNAMI+A
Sbjct: 458 QLGFEGSNSAGNALI------------TMYARCGAVKEAHLMFLVMPNIDSVSWNAMISA 505

Query: 184 YVDAGNMAQASELFNLMPQRNVW 206
               G+  +A ELF+ M    ++
Sbjct: 506 LGQHGHGREALELFDRMVAEGIY 528



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 24/209 (11%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK- 118
           A +A+I  Y + G V EA  +F  +   +  SW ++IS   +     E   LFDRM  + 
Sbjct: 467 AGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 119 -LKNVVSWTTVVLGCAHNGLIAK-----------LEVIS----WTTMCTGLERNAMTKLA 162
              + +S+ TV+  C H+GL+ +             +I     +T +   L R      A
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 163 REYFVQMPNKDIVA-WNAMITAYVDAGNMA----QASELFNLMPQRNVWTWNAMIDRYAR 217
           R+    MP +   + W A+++    +G+M      A +LF + PQ +  T+  + + Y+ 
Sbjct: 587 RDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD-GTYILLSNTYSA 645

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G    A ++  LM + R +  E  C+ I
Sbjct: 646 AGCWVDAARVRKLM-RDRGVKKEPGCSWI 673


>gi|297843734|ref|XP_002889748.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335590|gb|EFH66007.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 595

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 238/476 (50%), Gaps = 68/476 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA KLFD        S  SM+ V+  +     A+ LF  MPE  RNI++ + ++ G
Sbjct: 29  GQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPE--RNIISWNGLLSG 86

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK------- 120
           Y+K G +DEAR+VFD + E NV SWT+L         VD    LF +MP K K       
Sbjct: 87  YMKNGEIDEAREVFDLMLERNVVSWTTL---------VDVAESLFWKMPEKNKMGESMMR 137

Query: 121 -NVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            + ++ T+++ G    G +          ++  VI+WTTM TG  RN     AR+ F  M
Sbjct: 138 VSYIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFDVM 197

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELF-------------NLMPQRNVWTWNAMIDRYA 216
           P K  V+W +M+ +YV  G +  A ELF             + M +RN  TW  +I  + 
Sbjct: 198 PEKTEVSWTSMLMSYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKFHE 257

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETS 273
           RNG E  A+ L  LM +    P   T  S+L+ C  +         HA  +R  F+ +  
Sbjct: 258 RNGFELEALDLFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVDLY 317

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +       Y+        ++  ++L F+R  +KD++ W ++I  Y++H  G +  ++F  
Sbjct: 318 VASVLMTMYIKCG-----ELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYE 372

Query: 334 MLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           M  SG T+P+E+TFV  LS CS+AG+VE+G K F  M    G                RA
Sbjct: 373 MPLSGSTEPNEVTFVATLSACSYAGMVEEGLKIFESMESVLG----------------RA 416

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           G+  EAM ++  M   E D  V G+LLGACR H  + +A++  ++LIE++  +SG+
Sbjct: 417 GRFNEAMEMIDSMIV-EPDAAVWGSLLGACRTHSQLDLAEFCAKKLIEIETENSGS 471



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 23/226 (10%)

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           T L R      AR+ F    +K + +WN+M+  Y  +     A  LF+ MP+RN+ +WN 
Sbjct: 23  THLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERNIISWNG 82

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIR 265
           ++  Y +NG    A ++ +LM +     N  + T+++   E +      +N +  ++ +R
Sbjct: 83  LLSGYMKNGEIDEAREVFDLMLER----NVVSWTTLVDVAESLFWKMPEKNKMGESM-MR 137

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           + +   TS+ +   C         +  V+ AR  F+ +  + V++WT M+  Y  +    
Sbjct: 138 VSYIARTSMIHG-LCK--------EGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVD 188

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
              +LF  M     +  E+++  +L      G +E   + F    R
Sbjct: 189 DARKLFDVM----PEKTEVSWTSMLMSYVQNGRIEDAEELFEAKRR 230



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 112/263 (42%), Gaps = 48/263 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G   +V +A KLFD M +   VS  SM+  +++N  +  AE LF    E++R       
Sbjct: 181 YGRNNRVDDARKLFDVMPEKTEVSWTSMLMSYVQNGRIEDAEELF----EAKR------- 229

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
                    R  ++++ FD + E N  +W  +I   F  R   E   L D   L  K  V
Sbjct: 230 ---------RDSKSKEGFDSMKERNDATWQMVIK--FHERNGFELEAL-DLFVLMQKQGV 277

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKLAREYFVQMPNKDIVAWN 178
             T   L             IS  ++C  L      +    +L R  F    + D+   +
Sbjct: 278 RPTFPTL-------------ISVLSVCASLASLHHGKQVHAQLVRCQF----DVDLYVAS 320

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFM 237
            ++T Y+  G + ++  +F+  P +++  WN++I  YA +     A+K+   M       
Sbjct: 321 VLMTMYIKCGELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPLSGSTE 380

Query: 238 PNETTCTSILTSCE--GMLENML 258
           PNE T  + L++C   GM+E  L
Sbjct: 381 PNEVTFVATLSACSYAGMVEEGL 403


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 23/339 (6%)

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           +AR+ F +MP +D++ WN MI   V  G+   A +LF  MP+RNV +W +MI  YA+ G 
Sbjct: 166 VARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGK 225

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET----- 272
              A+ L   M  +  +PNE T  ++L +C  M   +L    H  + R G+E+       
Sbjct: 226 SKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNT 285

Query: 273 --SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              +  KC C            +  A   F+ +E + VVSW+AMI   + HG       L
Sbjct: 286 LIDMYVKCGC------------LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F +M+ +G KP+ +TF+G+L  CSH G+VEKGRK F  M+R YG  PR EHY C+ D+  
Sbjct: 334 FNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFS 393

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA   +  MP    + VV GALLG C++H +V++A+     L +L P + G YV
Sbjct: 394 RAGLLQEAHEFIMNMPI-APNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYV 452

Query: 451 LSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKG 489
           + +N++A  G W++ A+VRK M  R        ++++KG
Sbjct: 453 VLSNIYAEAGRWEDVARVRKLMRDRGTWEKLLQRMKLKG 491



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 23/216 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +F  MP  QR+++  + MI   VK G  + A K+F E+ E NV SWTS+I GY +  
Sbjct: 167 ARKVFDKMP--QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
           +  E   LF  M     L N V+   V++ CA  G +     I   +  +G E+N     
Sbjct: 225 KSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKN----- 279

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                       I   N +I  YV  G +  A  +F+ M +R V +W+AMI   A +G  
Sbjct: 280 ------------IRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRA 327

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
             A+ L N M  +   PN  T   IL +C   GM+E
Sbjct: 328 EDALALFNKMINTGVKPNAVTFIGILHACSHMGMVE 363



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 110/272 (40%), Gaps = 42/272 (15%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           + + A  +F L+    V  WN  +  +A       A+ L   + +    P+  TC+ +L 
Sbjct: 62  SFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLK 121

Query: 249 SCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C  +L+     + H    +LG +    L      + +   +    ++  AR  F+++  
Sbjct: 122 ACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ-----NMIVHLYALCGEIGVARKVFDKMPQ 176

Query: 306 KDVV-------------------------------SWTAMILAYSNHGHGFQVFRLFARM 334
           +DV+                               SWT+MI  Y+  G   +   LF  M
Sbjct: 177 RDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM 236

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
             +G  P+E+T V VL  C+  G +  GR+  +  +R+ G++      + L D+  + G 
Sbjct: 237 EDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS-GYEKNIRVCNTLIDMYVKCGC 295

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +++A R+   M   ER  V   A++     HG
Sbjct: 296 LEDACRIFDNM--EERTVVSWSAMIAGLAAHG 325



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 109/268 (40%), Gaps = 63/268 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G++  A K+FD+M Q D ++   MI   ++  D   A  LF  MPE  RN+ + ++
Sbjct: 158 YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPE--RNVRSWTS 215

Query: 64  MIDGYVKAGRVDEARKVFDEI--------------------------------------- 84
           MI GY + G+  EA  +F E+                                       
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSG 275

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           YE N+    +LI  Y K   +++  R+FD M  + + VVSW+ ++ G A +G       +
Sbjct: 276 YEKNIRVCNTLIDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALAL 333

Query: 145 SWTTMCTGLERNAMTKL--------------AREYFVQMPNK-----DIVAWNAMITAYV 185
               + TG++ NA+T +               R+YF  M         I  +  M+  + 
Sbjct: 334 FNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFS 393

Query: 186 DAGNMAQASELFNLMP-QRNVWTWNAMI 212
            AG + +A E    MP   N   W A++
Sbjct: 394 RAGLLQEAHEFIMNMPIAPNGVVWGALL 421



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
            F    + A+L F+ L+A +V  W   + +++          LF R+ +    PD  T  
Sbjct: 58  AFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCS 117

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL  CS    V  G+     + +  G +      + +  +    G++  A +V  KMP 
Sbjct: 118 FVLKACSRLLDVRNGKIVHGYVEK-LGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMP- 175

Query: 408 HERDHVVLGALLGACRLHGDVRMA 431
            +RD +    ++      GD   A
Sbjct: 176 -QRDVITWNIMIARLVKMGDAEGA 198


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 226/466 (48%), Gaps = 34/466 (7%)

Query: 56  RNIVAESAMIDGYVKAGRVDEA--RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           RN +  S ++  Y +   V+ A  R VFD I   N   W +++  Y  +   +    L+ 
Sbjct: 40  RNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYH 99

Query: 114 RMPLKLKNVV---SWTTVVLGCAHNGLIAKLEVISWTTMCT----GLERNAMTKLAREY- 165
           +M   L N V   S+T   L  A + L A  E             GLE  A   L R Y 
Sbjct: 100 QM---LHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYA 156

Query: 166 -----------FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                      F Q+P +DIV+WN MI  Y+  GN+  A ++F  MP++NV +W  MI  
Sbjct: 157 ISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVG 216

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ---E 271
           + R G    A+ LL  M  +   P+  T +  L++C G+    L     I    E+   +
Sbjct: 217 FVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGL--GALEQGKWIHTYIEKNEIK 274

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                 C    ++   G   ++  A L F +LE K V +WTA+I   + HG G +    F
Sbjct: 275 IDPVLGCVLTDMYVKCG---EMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWF 331

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M K+G  P+ ITF  +L+ CSHAGL E+G+  F  MS  Y  KP  EHY C+ D++ R
Sbjct: 332 TQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGR 391

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG +KEA   +  MP  + +  + GALL AC+LH    +   IG+ LIEL P  SG Y+ 
Sbjct: 392 AGLLKEAREFIESMPV-KPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIH 450

Query: 452 SANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            A+++AA GEW++  +VR +++ R +      S I + G  H   A
Sbjct: 451 LASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFA 496



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 57/290 (19%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHD-------------------------LPKAEALFRA 50
           +FD +S P+ V   +M+  +  ++D                         L KA +   A
Sbjct: 66  VFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSA 125

Query: 51  MPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
             E+Q+             + A ++++  Y  +G +  A  +F+++   ++ SW  +I G
Sbjct: 126 FEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDG 185

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------------LIAKLEVISW 146
           Y K   +D   ++F  MP   KNV+SWTT+++G    G            L+A ++  S 
Sbjct: 186 YIKFGNLDMAYKIFQAMP--EKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSI 243

Query: 147 T-----TMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLM 200
           T     + C GL      K    Y  +   K D V    +   YV  G M +A  +F+ +
Sbjct: 244 TLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKL 303

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            ++ V  W A+I   A +G    A+     M ++   PN  T T+ILT+C
Sbjct: 304 EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTAC 353


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 270/520 (51%), Gaps = 33/520 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA ++F+ M + D VS ++M+    R+  +  A  LF  MP+  RN+V+ SAMIDG
Sbjct: 182 GEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPD--RNVVSWSAMIDG 239

Query: 68  YVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKA----RQVDEGRR---LFDRMPLKL 119
           Y+  G   E   +F D   EG V   ++ ++  FKA     ++ EG +   L  R+  + 
Sbjct: 240 YMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEF 299

Query: 120 KNVVSWTTV----VLGCAHNG-----LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            NV+S + +    +LGC          ++  ++++W ++ +G   N   + A   F +MP
Sbjct: 300 DNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMP 359

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            KD+++W AMI  +  +G +  A ELFN++P ++ + W A+I  +  N     A+     
Sbjct: 360 VKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYAR 419

Query: 231 MFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M      PN  T +S+L +   ++   E +  H   +++  E   S+       Y     
Sbjct: 420 MIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFY----- 474

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               +V  A   F  +   +V+S+ ++I  ++ +G G +   ++ +M   G +P+ +TF+
Sbjct: 475 SKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFL 534

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP- 406
            VLS C+HAGLV++G   FN M   YG +P A+HY+C+ DIL RAG + EA+ ++  MP 
Sbjct: 535 AVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPF 594

Query: 407 -PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            PH     V GA+LGA + H  + +A    +R+ +L+P ++  YV+ +N+++A G+  + 
Sbjct: 595 KPHSG---VWGAILGASKTHLRLDLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDG 651

Query: 466 AQVR-KKMERRVKKVASFSQIEVKGKDHTLLAPMREMGYV 504
             V+  K  + +KK    S I +K K H  LA  +  G +
Sbjct: 652 DLVKMAKNLKGIKKSPGCSWITMKNKVHLFLAGDQSHGSI 691



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 170/362 (46%), Gaps = 32/362 (8%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           + C + I    RN ++ +AE++F  MP   +N  + +AM+  + + G++  AR++FDE+ 
Sbjct: 42  IQCNTQIAENGRNGNVKEAESIFHKMP--IKNTASWTAMLTAFAQNGQIQNARRLFDEMP 99

Query: 86  EGNVYSWTSLISGYFK-ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           +    S  ++IS Y +    V +   LF    L  +N+VS+  +++G    G     E +
Sbjct: 100 QRTTVSNNAMISAYIRNGCNVGKAYELFS--VLAERNLVSYAAMIMGFVKAGKFHMAEKL 157

Query: 145 SWTT-------MCTGLERNAMTKL-----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
              T        C+    N   K+     A   F  M  +D+V+W+AM+      G +A 
Sbjct: 158 YRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAA 217

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A +LF+ MP RNV +W+AMID Y   G   EG  +  +++  +     N TT T +  +C
Sbjct: 218 ARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCL-FMDMKREGLVEVNSTTMTIMFKAC 276

Query: 251 EG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                M E M  H L  RLGFE +  L+      Y           + A   F  +  KD
Sbjct: 277 GNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGC-----TDMADKVFCTVSDKD 331

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +V+W ++I  Y ++      +R+F RM       D I++  +++  S +G VE   + FN
Sbjct: 332 IVTWNSLISGYIHNNEVEAAYRVFGRM----PVKDVISWTAMIAGFSKSGRVENAIELFN 387

Query: 368 LM 369
           ++
Sbjct: 388 ML 389



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 28/253 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S  GCT     A K+F  +S  D V+  S+I+ ++ N+++  A  +F  MP   +++++ 
Sbjct: 312 SMLGCT---DMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMP--VKDVISW 366

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +AMI G+ K+GRV+ A ++F+ +   + + WT++ISG+    + +E    + RM      
Sbjct: 367 TAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARM------ 420

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCT---GLE-RNAMTKLAREYFVQMPNKDIVAW 177
                 +  GC  N L     + +   +     GL+    + K+  EY + +        
Sbjct: 421 ------IWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQ------- 467

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N++I+ Y  +GN+  A  +F  + + NV ++N++I  +A+NG    A+ +   M      
Sbjct: 468 NSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHE 527

Query: 238 PNETTCTSILTSC 250
           PN  T  ++L++C
Sbjct: 528 PNHVTFLAVLSAC 540



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 122/293 (41%), Gaps = 36/293 (12%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +K ++  N  I      GN+ +A  +F+ MP +N  +W AM+  +A+NG    A +L + 
Sbjct: 38  SKFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDE 97

Query: 231 MFQSRFMPNETTCTS-ILTSCE---------GMLENMLAHALAIRLGFEQ---------- 270
           M Q   + N    ++ I   C           + E  L    A+ +GF +          
Sbjct: 98  MPQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKL 157

Query: 271 --ETSLTYK-CTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
             ET   ++   C     +   ++ +VN A   FE +  +DVVSW+AM+      G    
Sbjct: 158 YRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAA 217

Query: 327 VFRLFARMLKSGTKPDE--ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
              LF RM      PD   +++  ++      G  ++G   F  M R    +  +   + 
Sbjct: 218 ARDLFDRM------PDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTI 271

Query: 385 LADILRRAGQVKEAMRV---VSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
           +       G++ E M++   VS++   E D+V+  +++    + G   MAD +
Sbjct: 272 MFKACGNCGRMSEGMQIHGLVSRL-GFEFDNVLSNSVITMYSMLGCTDMADKV 323


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/535 (27%), Positives = 254/535 (47%), Gaps = 79/535 (14%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--------------- 55
           ++A ++F  + +PD V C+ MI+ F R+   P+A  +F  M +                 
Sbjct: 314 EDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVA 373

Query: 56  ---------RNIVAE-------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                    R+I A               A++  YVK G V +A   FD +   ++ SW 
Sbjct: 374 SRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWN 433

Query: 94  SLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           +L+SG++     + G R+F  +  +  L N  ++  ++  C            S   +  
Sbjct: 434 TLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT-----------SLMDLRF 482

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G + +A   + +  F      D      ++  YV AG    A  +F+ + +R+V++W  +
Sbjct: 483 GCQVHAC--VLKSGF----QGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVV 536

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGF 268
           +  YA+      A++    M +    PN+ T  + L+ C  +      +  H+  I+ G+
Sbjct: 537 MSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGW 596

Query: 269 EQET------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                      +  KC             ++  A + F+  +  D+V W  +I  Y+ HG
Sbjct: 597 NSSVVSSALVDMYVKCG------------NLADAEMLFDESDTHDLVEWNTIICGYAQHG 644

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
           HG++    F  M+  G  PDEITFVGVLS CSHAGL+++GR+ F L+S  YG  P  EHY
Sbjct: 645 HGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHY 704

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
           +C+ DIL +AG++ EA  ++++MP    D  +   +LGACR+HG++ +A+   E+L E Q
Sbjct: 705 ACMVDILAKAGKLAEAESLINEMPL-TPDASLWKTILGACRMHGNIEIAERAAEKLFESQ 763

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           P    + +L +N++A    W++ A++R  + +R VKK    S IE+ GK H  L+
Sbjct: 764 PDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLS 818



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 32/359 (8%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           L R+ P  + +     ++++ Y K GR+ +AR VFD +   +V +WT+++S    A    
Sbjct: 86  LLRSGP--RPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAG 143

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNG--LIAKLEVISWTTMCTGLERNAMTKLARE 164
              RLF  M  +            G   NG  L A L+       CT       T     
Sbjct: 144 AALRLFAEMSEE------------GVVPNGFALAAALKA------CTVGSDLGFTPQVHA 185

Query: 165 YFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
             V++    D    ++++ AYV  G +  A       P R+  +WNA+++ YAR+G    
Sbjct: 186 QAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAK 245

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYKCTC 280
            M + + + +S    ++ T  ++L  C   G+ ++  A H L I+ G E +  L      
Sbjct: 246 VMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN----- 300

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           + +   +   L    A   F R++  DVV  + MI  +  H    + F +F +M   G K
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           P++ TFVG+    S  G V   R     + ++ GF         +  +  + G V++A+
Sbjct: 361 PNQYTFVGLAIVASRTGDVNLCRSIHAHIVKS-GFSRTKGVCDAIVGMYVKTGAVQDAI 418



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 13/251 (5%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P  D    ++++  Y   G +A A  +F+ MP R+V  W AM+      G  GAA++L  
Sbjct: 91  PRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFA 150

Query: 230 LMFQSRFMPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            M +   +PN     + L +C      G    +  HA A++L    +  ++      YV 
Sbjct: 151 EMSEEGVVPNGFALAAALKACTVGSDLGFTPQV--HAQAVKLEGLFDPYVSSSLVEAYVS 208

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  +V+ A  A      +  VSW A++  Y+  G   +V  +F ++++SG +  + 
Sbjct: 209 CG-----EVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKY 263

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T   VL  C   GL + G+    L+ +  G +      +CL ++  +    ++A  V ++
Sbjct: 264 TLPTVLKCCMELGLAKSGQAVHGLVIK-RGLETDRVLNNCLIEMYSKCLSAEDAYEVFAR 322

Query: 405 MPPHERDHVVL 415
           +   +  H  L
Sbjct: 323 IDEPDVVHCSL 333



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 171/424 (40%), Gaps = 40/424 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDL---PKAEALFRAMPE 53
            S     G    A +LF EMS+    P+  + A+ +       DL   P+  A    + E
Sbjct: 133 VSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKL-E 191

Query: 54  SQRNIVAESAMIDGYVKAGRVDEA-RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
              +    S++++ YV  G VD A R + D     +V SW +L++ Y +     +   +F
Sbjct: 192 GLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDV-SWNALLNEYARDGDYAKVMLVF 250

Query: 113 DRMPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           D++      +  +T  TV+  C   GL    + +    +  GLE                
Sbjct: 251 DKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLE---------------- 294

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D V  N +I  Y    +   A E+F  + + +V   + MI  + R+     A  +   
Sbjct: 295 -TDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQ 353

Query: 231 MFQSRFMPNETTCT--SILTSCEGMLENMLA-HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M      PN+ T    +I+ S  G +    + HA  ++ GF +      K  C  +   +
Sbjct: 354 MSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRT-----KGVCDAIVGMY 408

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                V  A LAF+ ++  D+ SW  ++  + +  +     R+F  ++  G   ++ T+V
Sbjct: 409 VKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYV 468

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           G+L  C+    +  G +    + ++ GF+   +    L D+  +AG    A  V  ++  
Sbjct: 469 GILRCCTSLMDLRFGCQVHACVLKS-GFQGDYDVSKMLLDMYVQAGCFTNARLVFDRL-- 525

Query: 408 HERD 411
            ERD
Sbjct: 526 KERD 529


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 237/501 (47%), Gaps = 90/501 (17%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  +++ E   +   V +G +D A ++F +I + +++ W ++I G  +  +      L+ 
Sbjct: 43  STTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYT 102

Query: 114 RMP--------------LKLKNVVSWTTVVLGC--------------AHNGLI------- 138
           +M               LK    +SW  +  G                 N LI       
Sbjct: 103 QMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCG 162

Query: 139 ------------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
                       AK EV+ W+ +  G  R     +AR+ F +MP KD+V+WN MITAY  
Sbjct: 163 DLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAK 222

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G M +A +LF+ +P+++V TWNAMI  Y  +     A+++ + M      P++ T  SI
Sbjct: 223 HGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSI 282

Query: 247 LTS--------------------CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           L++                    C G L  +L++AL           +  KC        
Sbjct: 283 LSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNAL---------IDMYAKCGS------ 327

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 + +A   F+ +  KD  SW ++I   + HGH  +   LF  ML+   KP+EITF
Sbjct: 328 ------IGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITF 381

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V VL  CSHAG V +GR  FNLM   +  +P  +HY C+ DIL RAG + EA   +  M 
Sbjct: 382 VAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTME 441

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             E + ++   LLGACR+HGDV +     E+L++++   SG YVL +N++A++GEWD   
Sbjct: 442 I-EPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQ 500

Query: 467 QVRKKMER-RVKKVASFSQIE 486
           +VRK M+   VKK    S I+
Sbjct: 501 KVRKLMDDGGVKKKVGHSLID 521



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 59/269 (21%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T+ +   GK+  A +LFDEM   D VS   MIT + ++ ++ KA  LF  +P  ++++V 
Sbjct: 186 TAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVP--KKDVVT 243

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AMI GYV +    EA ++FD +                     D G+R  D       
Sbjct: 244 WNAMIAGYVLSRLNKEALEMFDAMR--------------------DLGQRPDD------- 276

Query: 121 NVVSWTTVVLGCAHNG--LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             V+  +++   A  G   I K    S   MC G                  +  ++  N
Sbjct: 277 --VTMLSILSASADLGDLEIGKKIHRSIFDMCCG------------------DLSVLLSN 316

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++  A E+F  M +++  +WN++I   A +G    ++ L   M + +  P
Sbjct: 317 ALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKP 376

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLG 267
           NE T  ++L +C        +HA  +R G
Sbjct: 377 NEITFVAVLVAC--------SHAGKVREG 397


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 227/462 (49%), Gaps = 44/462 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +A+I   V  G +D ARK+FD+    ++ SW S+I+GY +     E    +  M 
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200

Query: 117 LK--LKNVVSWTTVVLGCAH----------------NGLIAKLEVISWTTMCTGLERNAM 158
           ++    + V+   VV  CA                 NGL  KL V     +     +   
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGL--KLTVPLANALMDMYMKCGN 258

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
            + AR+ F  M NK +V+W  M+  Y  +G +  A +LF+ MP ++V  WNAMI  Y   
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-------AHALAIRLGFE 269
                A+ L N M      P+E T  S L++C   G L+  +        H L++ +   
Sbjct: 319 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALG 378

Query: 270 QETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                 Y KC              +  A   F+ L  ++ ++WTA+I   + HG+     
Sbjct: 379 TALIDMYAKCG------------KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 426

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
             F+ M+ +   PDE+TF+G+LS C H GLVE+GRK F+ MS  +   P+ +HYSC+ D+
Sbjct: 427 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 486

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG ++EA  ++  MP  E D VV GAL  ACR+HG+V M +    +L+++ P  SG 
Sbjct: 487 LGRAGLLEEAEELIKSMPI-EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI 545

Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           YVL AN++     W E  + RK M +R V+K    S IEV G
Sbjct: 546 YVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNG 587



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 160/386 (41%), Gaps = 61/386 (15%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G +  A K+FD+    D VS  SMI  ++R     +A   +R M      P+        
Sbjct: 156 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 215

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   +  +   +A++D Y+K G ++ ARK+FD +    + 
Sbjct: 216 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 275

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH-----------NGLIA 139
           SWT+++ GY ++  +D   +LFD MP   K+VV W  ++ G  H           N + A
Sbjct: 276 SWTTMVVGYAQSGLLDMAWKLFDEMP--DKDVVPWNAMIGGYVHANRGKEALALFNEMQA 333

Query: 140 ------KLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQ 192
                 ++ ++S  + C+ L    +      Y  +   + ++    A+I  Y   G + +
Sbjct: 334 MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITK 393

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-- 250
           A ++F  +P RN  TW A+I   A +G    A+   + M  +  MP+E T   +L++C  
Sbjct: 394 AIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 453

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
            G++E    +   +   F     L +  +C          L+     +    +EA D V 
Sbjct: 454 GGLVEEGRKYFSQMSSKFNLSPKLKHY-SCMVDLLGRAGLLEEAEELIKSMPIEA-DAVV 511

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK 336
           W A+  A   HG+     R  +++L+
Sbjct: 512 WGALFFACRIHGNVLMGERAASKLLQ 537



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 56/378 (14%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N +SW   I G+  +    E   L+ R              VL C       K +  ++ 
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKR--------------VLQCDG----TKPDNYTYP 111

Query: 148 TMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +     R ++ ++  E    +     + DI   NA+I   V  G++  A ++F+    R
Sbjct: 112 LLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVR 171

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM------ 257
           ++ +WN+MI+ Y R G    A+     M      P+E T   +++SC   LE++      
Sbjct: 172 DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC-AQLEDLDLGRES 230

Query: 258 --------------LAHALA---IRLGFEQET-----SLTYKCTCHYVFWDWGFQLD--V 293
                         LA+AL    ++ G  +       S+T K    +     G+     +
Sbjct: 231 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLL 290

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           + A   F+ +  KDVV W AMI  Y +   G +   LF  M      PDE+T V  LS C
Sbjct: 291 DMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSAC 350

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S  G ++ G    + + + +         + L D+  + G++ +A++V  ++P   R+ +
Sbjct: 351 SQLGALDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPG--RNSL 407

Query: 414 VLGALLGACRLHGDVRMA 431
              A++    LHG+   A
Sbjct: 408 TWTAIISGLALHGNAHGA 425



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 70/273 (25%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-------------- 52
           +G +  A KLFDEM   D V   +MI  ++  +   +A ALF  M               
Sbjct: 287 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 346

Query: 53  -----------------------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                  E   N+   +A+ID Y K G++ +A +VF E+   N 
Sbjct: 347 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 406

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +WT++ISG             F  M     + + V++  ++  C H GL+ +       
Sbjct: 407 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEE------- 459

Query: 148 TMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP- 201
                          R+YF QM +K      +  ++ M+     AG + +A EL   MP 
Sbjct: 460 --------------GRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI 505

Query: 202 QRNVWTWNAMIDRYARNG----PEGAAMKLLNL 230
           + +   W A+      +G     E AA KLL +
Sbjct: 506 EADAVVWGALFFACRIHGNVLMGERAASKLLQM 538


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/510 (30%), Positives = 245/510 (48%), Gaps = 62/510 (12%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +   MPE  ++ +  + ++ G+V+ G V  AR  F+EI       W ++ISGY ++ 
Sbjct: 218 ARKVLDEMPE--KDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSG 275

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL------------------IAKLEV 143
              E   LF RM  K    +  ++T+++  CA+ G                   + +  +
Sbjct: 276 MCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAAL 335

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                + T   ++    +A + F  M  KD+V+WN +++ Y+++G +  A+ +F  MP +
Sbjct: 336 PVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYK 395

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAH 260
           +  +W  M+  Y   G    A+KL N M      P + T    + +C   G L++    H
Sbjct: 396 SELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLH 455

Query: 261 ALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
           A  ++ GFE   S     LT    C  V            ARL F  +   D VSW AMI
Sbjct: 456 AHLVQCGFEASNSAGNALLTMYARCGAV----------KDARLVFLVMPNVDSVSWNAMI 505

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            A   HGHG +   LF +M+  G  PD I+F+ +L+ C+HAGLV+ G + F  M R +G 
Sbjct: 506 SALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGI 565

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            P  +HY+ L D+L RAG++ EA  ++  M P E    +  A+L  CR++GD+ +  Y  
Sbjct: 566 SPGEDHYARLIDLLGRAGRIGEARDLIKTM-PFEPTPAIWEAILSGCRINGDMELGAYAA 624

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           ++L ++ P   G Y+L +N ++A G W + A+VRK M +R VKK    S IEV  K H  
Sbjct: 625 DQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVF 684

Query: 495 L--------------------APMREMGYV 504
           L                    A MR++GYV
Sbjct: 685 LVGDTKHPDAHEVYRFLEMVGAKMRKLGYV 714



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 209/501 (41%), Gaps = 71/501 (14%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80
           + P PV+  S+++ +     L  + A F ++P ++R+ V  +AMI  + +A     A  V
Sbjct: 85  ADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSV 144

Query: 81  F------DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           F      D+    + YS+TSL+S   +   +                 VS  T  L CA 
Sbjct: 145 FRSLLASDDSLRPDDYSFTSLLSAVGQMHDL----------------AVSHCTQ-LHCAV 187

Query: 135 NGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           + L A   V+S +     L    +   +T+ AR+   +MP KD + W  ++  +V  G++
Sbjct: 188 HKLGAG-AVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDV 246

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A   F  +       WNAMI  Y ++G    A +L   M   R  P+E T TS+L++C
Sbjct: 247 HAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSAC 306

Query: 251 EG---MLENMLAHALAIRL--GFEQETSL------------TYKCTCHYVFWDWGFQLDV 293
                 L     H   IRL   F  E +L            + K       +D     DV
Sbjct: 307 ANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDV 366

Query: 294 -----------------NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                            N+AR+ F+ +  K  +SW  M+  Y + G      +LF +M  
Sbjct: 367 VSWNTILSGYIESGCLDNAARI-FKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
              KP + T+ G ++ C   G ++ G++    + +  GF+      + L  +  R G VK
Sbjct: 426 EDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQC-GFEASNSAGNALLTMYARCGAVK 484

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSA 453
           +A  V   MP    D V   A++ A   HG  R A  + ++++   + P   S   +L+A
Sbjct: 485 DARLVFLVMP--NVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542

Query: 454 NVHAARGEWDEFAQVRKKMER 474
             HA  G  D+  Q  + MER
Sbjct: 543 CNHA--GLVDDGFQYFESMER 561



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 61/302 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G V  A   F+E+     V   +MI+ ++++    +A  LFR M      P+        
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303

Query: 55  ----------------------QRNIVAES------AMIDGYVKAGRVDEARKVFDEIYE 86
                                 Q + V E+      A++  Y K+G++  A K+FD +  
Sbjct: 304 SACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL 363

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI-------- 138
            +V SW +++SGY ++  +D   R+F  MP   K+ +SW  +V G  H GL         
Sbjct: 364 KDVVSWNTILSGYIESGCLDNAARIFKEMP--YKSELSWMVMVSGYVHGGLAEDALKLFN 421

Query: 139 ----AKLEVISWT-----TMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
                 ++   +T       C  L      K    + VQ        A NA++T Y   G
Sbjct: 422 QMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCG 481

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A  +F +MP  +  +WNAMI    ++G    A++L + M      P+  +  +ILT
Sbjct: 482 AVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILT 541

Query: 249 SC 250
           +C
Sbjct: 542 AC 543



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 25/204 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +GK+  ATK+FD M+  D VS  ++++ ++ +  L  A  +F+ MP   ++ ++   M+ 
Sbjct: 348 SGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMP--YKSELSWMVMVS 405

Query: 67  GYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           GYV  G  ++A K+F+++   +V    Y++   ++   +   +  G++L         ++
Sbjct: 406 GYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLH-------AHL 458

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           V         A N L+            T   R    K AR  F+ MPN D V+WNAMI+
Sbjct: 459 VQCGFEASNSAGNALL------------TMYARCGAVKDARLVFLVMPNVDSVSWNAMIS 506

Query: 183 AYVDAGNMAQASELFNLMPQRNVW 206
           A    G+  +A ELF+ M  + ++
Sbjct: 507 ALGQHGHGREALELFDQMVAQGIY 530


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 186/342 (54%), Gaps = 24/342 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +M  +D+VAWN MI  YV AG++A A ELF+ MP+RNV +W  +I  YA+    
Sbjct: 133 ARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRP 192

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLT--- 275
             A+++   M      P+     S+L++C  +    L    H   +R G  QE  L    
Sbjct: 193 EEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSI 252

Query: 276 ----YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                KC C            +  A   FE +E K VV+WT +I  ++ HG G Q   +F
Sbjct: 253 IDMYMKCGC------------IEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMF 300

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            RM +    P+++TF+ +LS CSH GL + GR  FN+M   Y  KP+ EHY C+ D+L R
Sbjct: 301 RRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGR 360

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG +KEA  +V  MP  + +  + GALL A R HGD  + +     LIEL+PS+SG Y+L
Sbjct: 361 AGCLKEAQDLVKDMPL-KANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYIL 419

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
            +N+ A +  WD+ +++RK M ER ++ V   S IEV G  H
Sbjct: 420 LSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIEVDGMVH 461



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 19/223 (8%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           AS++ ++     +  A ++F  M  + R++VA + MI GYVKAG +  AR++FD + E N
Sbjct: 118 ASLVQLYCTCRHVADARSVFHEM--AVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERN 175

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           V SWT++I GY + R+ +E   +F RM ++            G   +G +A L V+S   
Sbjct: 176 VVSWTTVIGGYAQMRRPEEAVEVFRRMQVE------------GIEPDG-VALLSVLS--- 219

Query: 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            C  L    + +    + V+    ++I   N++I  Y+  G + +A E+F  M +++V T
Sbjct: 220 ACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVT 279

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           W  +I  +A +G    A+++   M +    PN+ T  +IL++C
Sbjct: 280 WTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSAC 322



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 32/245 (13%)

Query: 3   QFGCTGK-VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           Q  CT + V +A  +F EM+  D V+   MI  +++  DL  A  LF AMPE  RN+V+ 
Sbjct: 122 QLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPE--RNVVSW 179

Query: 62  SAMIDGYVKAGRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGR-------R 110
           + +I GY +  R +EA +VF     E  E +  +  S++S       VD G        R
Sbjct: 180 TTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVR 239

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREY 165
              R  + L N +    +  GC    +     + +  V++WTT+  G   + +   A E 
Sbjct: 240 RGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEM 299

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASEL----FNLM-------PQRNVWTWNAMIDR 214
           F +M  +++   +    A + A +    ++L    FN+M       PQ  V  +  M+D 
Sbjct: 300 FRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQ--VEHYGCMVDL 357

Query: 215 YARNG 219
             R G
Sbjct: 358 LGRAG 362


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/508 (29%), Positives = 257/508 (50%), Gaps = 43/508 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A  +F  MP   R++ + +AM+      GR+D A  +F+ + + ++
Sbjct: 98  SVLNMYGKCGDSETATTVFERMP--VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI 155

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG---------- 136
            SW ++I+GY +     +  +LF RM        +  + T+V+  CA+ G          
Sbjct: 156 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 215

Query: 137 LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKD--IVAWNAMITAYVDAGNM 190
            I + E+   + +   L     ++   + AR    Q    D  ++++ A++  YV  G+M
Sbjct: 216 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 275

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A E+F +M  R+V  W AMI  Y +NG    A+ L   M      PN  T  ++L+ C
Sbjct: 276 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 335

Query: 251 EGML---ENMLAHALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFERL- 303
             +         H  AIR   EQ +S++      Y     + W        AR  F+++ 
Sbjct: 336 ASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPW--------ARRMFDQVC 387

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             K+ ++WT+MI+A + HG G +   LF  ML++G +PD IT+VGVLS CSHAG V +G+
Sbjct: 388 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGK 447

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
           + ++ +   +   P   HY+C+ D+L RAG   EA   + +MP  E D +  G+LL ACR
Sbjct: 448 RYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV-EPDAIAWGSLLSACR 506

Query: 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRVKKVASF 482
           +H +  +A+   E+L+ + P++SGAY   ANV++A G W + A++ K + E+ V+K   F
Sbjct: 507 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 566

Query: 483 SQIEVKGKDHTLLA-----PMREMGYVV 505
           S   ++ K H   A     P R+  Y +
Sbjct: 567 SWTHIRSKIHVFGADDVVHPQRDAVYAM 594



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 48/345 (13%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL--------FDRMPLKL 119
           + K+GR+ +AR VF E+ E +  SWT ++ G  +A +  E  +         F      L
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 120 KNVVSWTTVV----LGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPN 171
            NV+S   V     +G   +  + KL + S   +   +     +   ++ A   F +MP 
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           + + +WNAM++     G M  A  LF  MP R++ +WNAMI  Y +NG +  A+KL + M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 232 F-QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYV---- 283
             +S   P+E T TS+L++C  +    +    HA  +R      + +T      Y     
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 284 ------FWDWGFQLDVN------------------SARLAFERLEAKDVVSWTAMILAYS 319
                   D   + D+N                  SAR  F  +  +DVV+WTAMI+ Y 
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +G   +   LF  M+  G +P+  T   VLS C+    ++ G++
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 346



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 125/282 (44%), Gaps = 39/282 (13%)

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           +  +G +A A  +F  MP+R+  +W  M+    R G  G A+K L  M    F P + T 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 244 TSILTSCEGMLENMLA---HALAIRLGF-------EQETSLTYKC----TCHYVF----- 284
           T++L+SC       +    H+  ++LG            ++  KC    T   VF     
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 285 -----WDWGFQLDVNSARL-----AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                W+    L+ +  R+      FE +  + +VSW AMI  Y+ +G   +  +LF+RM
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 335 L-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL---- 389
           L +S   PDE T   VLS C++ G V  G++       AY  +    + S + + L    
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQV-----HAYILRTEMAYNSQVTNALISTY 236

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            ++G V+ A R++ +    + + +   ALL      GD+  A
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 278


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/466 (31%), Positives = 239/466 (51%), Gaps = 42/466 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGN--VYSWTSLISGYFKARQVDEGRRLFDRM--- 115
           ++ +I  Y K   VD ARKVF+E +        + +L+SGY    +  +   LF +M   
Sbjct: 78  QTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEE 137

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             P+   N V+   ++  C        LE+ S +  C+ L+                + D
Sbjct: 138 GVPV---NSVTLLGLIPACVSP---INLELGS-SLHCSTLKYGF-------------DSD 177

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N  IT Y+  G++  A +LF+ MP + + +WNAM+  YA+NG     ++L   M  
Sbjct: 178 VSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM 237

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTCHYVFWDWGFQ 290
           +   P+  T   +L+SC  +    + H +  ++   GF     L       Y        
Sbjct: 238 NGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCG---- 293

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  A+  F+ +  + +VSWTA+I  Y  HGHG    +LF  M++SG +PD   FV VL
Sbjct: 294 -NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVL 352

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSHAGL ++G + F +M R Y  +P  EHYSC+ D+L RAG++KEA  ++  MP  + 
Sbjct: 353 SACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPI-KP 411

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  V GALLGAC++H +V +A+   ER+IEL+P + G YVL +N+++         ++R 
Sbjct: 412 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 471

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLAPMR-----EMGYVVLKEVD 510
            M E+++KK    S +E+KG+ H  +   R     +  Y VL+E++
Sbjct: 472 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELE 517



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 56/245 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-------- 53
           G V  A KLFDEM     +S  +M++ + +N        L+R M      P+        
Sbjct: 192 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVL 251

Query: 54  -SQRNIVAES----------------------AMIDGYVKAGRVDEARKVFDEIYEGNVY 90
            S  N+ A+S                      A+I+ Y + G + +A+ VFD + E  + 
Sbjct: 252 SSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLV 311

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT++I GY      +   +LF  M       +  ++  V+  C+H GL  +        
Sbjct: 312 SWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ-------- 363

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWT 207
              GLE   M K  R Y ++ P  +   ++ M+     AG + +A  L   MP + +   
Sbjct: 364 ---GLEYFKMMK--RNYQLE-PGPE--HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 415

Query: 208 WNAMI 212
           W A++
Sbjct: 416 WGALL 420


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 250/537 (46%), Gaps = 78/537 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G   EA K+FD M + + VS A+MI+ +       +A  LFR M                
Sbjct: 157 GLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVL 216

Query: 52  -----PESQRN----------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                PE   N                +   +A++  Y K G +D+A + F+   + N  
Sbjct: 217 SALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSI 276

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           +W+++I+GY ++   D+  +LF  M L       +T V       G+I           C
Sbjct: 277 TWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFV-------GVI---------NAC 320

Query: 151 TGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           + L      K   +Y +++     I    A++  Y    ++  A + F+ + + ++  W 
Sbjct: 321 SDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWT 380

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRL 266
           +MI  Y +NG    A+ L   M     +PNE T  S+L +C  +    +    HA  ++ 
Sbjct: 381 SMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKY 440

Query: 267 GFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           GF  E       +++  KC C            +    L F R+ A+DV+SW AMI   S
Sbjct: 441 GFGLEVPIGSALSTMYAKCGC------------LKDGTLVFRRMPARDVISWNAMISGLS 488

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +G G +   LF  M   GTKPD +TFV +LS CSH GLVE+G   F +M   +G  PR 
Sbjct: 489 QNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRV 548

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY+C+ DIL RAG++KEA+   ++    +    +   +LGACR + +  +  Y GE+L+
Sbjct: 549 EHYACMVDILSRAGKLKEAIE-FTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLM 607

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLL 495
           EL    S AYVL +++++A G W++  +VR+ M+ R V K    S IE+K   H  +
Sbjct: 608 ELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFV 664



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 185/415 (44%), Gaps = 31/415 (7%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV-AESAMIDGYVKAGRVDEAR 78
           M+ P   S  + +  +  N  L K +AL   + +S  + V   +++++ Y K  R+ EA+
Sbjct: 1   MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAK 60

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGR--RLFDRMPLKLKNVVSWTTVVLGCAHNG 136
            VF+ I   +V SW  +I+GY +           LF RM  + +N         G     
Sbjct: 61  FVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM--RAENTAPNAHTFAGV---- 114

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-KDIVAWNAMITAYVDAGNMAQASE 195
                      T  + L   A  +LA    ++M + +D+   ++++  Y  AG   +A +
Sbjct: 115 ----------FTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARK 164

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EG 252
           +F+ MP+RN  +W  MI  YA       A+ L  LM +     NE   TS+L++    E 
Sbjct: 165 VFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPEL 224

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           +      H +A++ G     S+       Y          ++ A   FE    K+ ++W+
Sbjct: 225 VNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-----SLDDALQTFETSSDKNSITWS 279

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           AMI  Y+  G   +  +LF+ M  SG +P E TFVGV++ CS  G   +G++  + + + 
Sbjct: 280 AMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLK- 338

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            GF+ +    + L D+  +   + +A +    +   E D V+  +++G    +G+
Sbjct: 339 LGFESQIYVMTALVDMYAKCSSIVDARKGFDYL--QEPDIVLWTSMIGGYVQNGE 391


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/522 (30%), Positives = 254/522 (48%), Gaps = 80/522 (15%)

Query: 13  ATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAM-------PE----------- 53
           A KLFD+  Q  D     SMI  +L     P + AL+R +       P+           
Sbjct: 29  ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88

Query: 54  -------------SQ-------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                        SQ        ++   + ++D Y K G++  AR  FDE+   +  SWT
Sbjct: 89  SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
           +LISGY +  ++D   +LFD+MP  +K+VV +  ++ G   +G +               
Sbjct: 149 ALISGYIRCGELDLASKLFDQMP-HVKDVVIYNAMMDGFVKSGDMTS------------- 194

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                   AR  F +M +K ++ W  MI  Y +  ++  A +LF+ MP+RN+ +WN MI 
Sbjct: 195 --------ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIG 246

Query: 214 RYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG----- 267
            Y +N      ++L   M  +  + P++ T  S+L +        ++   A+ LG     
Sbjct: 247 GYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA--------ISDTGALSLGEWCHC 298

Query: 268 FEQETSLTYKC-TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           F Q   L  K   C  +   +    ++  A+  F+ +  K V SW AMI  Y+ +G+   
Sbjct: 299 FVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF  M+    KPDEIT + V++ C+H GLVE+GRK F++M R  G   + EHY C+ 
Sbjct: 359 ALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMV 416

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG +KEA  +++ MP  E + ++L + L AC  + D+  A+ I ++ +EL+P + 
Sbjct: 417 DLLGRAGSLKEAEDLITNMP-FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEV 487
           G YVL  N++AA   WD+F  V+  M + + KK    S IE+
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEI 517



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 144/270 (53%), Gaps = 27/270 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+  A   FDEM     VS  ++I+ ++R  +L  A  LF  MP   +++V  +AM+DG
Sbjct: 127 GKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHV-KDVVIYNAMMDG 185

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           +VK+G +  AR++FDE+    V +WT++I GY   + +D  R+LFD MP   +N+VSW T
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMP--ERNLVSWNT 243

Query: 128 VVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTKLAR----------------EYFVQMP 170
           ++ G C +      + +       T L+ + +T L+                   FVQ  
Sbjct: 244 MIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303

Query: 171 --NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL- 227
             +K +    A++  Y   G + +A  +F+ MP++ V +WNAMI  YA NG   AA+ L 
Sbjct: 304 KLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLF 363

Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           + +M + +  P+E T  +++T+C   G++E
Sbjct: 364 VTMMIEEK--PDEITMLAVITACNHGGLVE 391



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 75/291 (25%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A +LFDEM+    ++  +MI  +    D+  A  LF AMPE  RN+V+ + MI 
Sbjct: 189 SGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE--RNLVSWNTMIG 246

Query: 67  GYVKAGRVDEARKVFDEI----------------------------------------YE 86
           GY +  +  E  ++F E+                                         +
Sbjct: 247 GYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLD 306

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
             V   T+++  Y K  ++++ +R+FD MP K                       +V SW
Sbjct: 307 KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEK-----------------------QVASW 343

Query: 147 TTMCTGLERNAMTKLAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
             M  G   N   + A + FV M      D +   A+ITA    G + +  + F++M + 
Sbjct: 344 NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM 403

Query: 204 ----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                +  +  M+D   R G    A  L+  M    F PN    +S L++C
Sbjct: 404 GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM---PFEPNGIILSSFLSAC 451


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 243/481 (50%), Gaps = 45/481 (9%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
            S+I+V+++N  L  A  +F   P   R++V+ +A+I GY   G ++ A+K+FDEI   +
Sbjct: 173 TSLISVYVQNGRLEDARKVFDRSP--HRDVVSYTALIKGYASRGYIESAQKLFDEIPVKD 230

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAKLEV 143
           V SW ++ISGY +     E   LF  M   +K  +     +  TVV  CA +G I     
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKEM---MKTNIRPDESTMVTVVSACAQSGSIE---- 283

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                    L R   + +    F    N  IV  N+++  Y   G +  A  LF  +  +
Sbjct: 284 ---------LGRQVHSWIDDHGFGS--NLKIV--NSLMDLYSKCGELETACGLFEGLLYK 330

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA 263
           +V +WN +I  Y        A+ L   M +S   PN+ T  SIL +C        AH  A
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPAC--------AHLGA 382

Query: 264 IRLGF-------EQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMI 315
           I +G        ++  S T   +      D   +  D+ +A   F  +  K + SW AMI
Sbjct: 383 IDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
             ++ HG     F +F+RM K G +PD+ITFVG+LS CS +G+++ GR  F  M++ Y  
Sbjct: 443 FGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKI 502

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            P+ EHY C+ D+L  +G  KEA  +++ M   E D V+  +LL AC++ G+V + +   
Sbjct: 503 TPKLEHYGCMIDLLGHSGLFKEAEEMINNM-EMEPDGVIWCSLLKACKIRGNVELGESFA 561

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           + LI+++P + G YVL +N++A  G W+E A++R  + ++ +KKV   S IE+    H  
Sbjct: 562 QNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 495 L 495
           +
Sbjct: 622 I 622



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 166/349 (47%), Gaps = 25/349 (7%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVS 124
           A  VF+ I E N+  W ++  G+  +       +L+  M            P  LK+   
Sbjct: 87  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146

Query: 125 WTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                 G   +G + KL    ++   T++ +   +N   + AR+ F + P++D+V++ A+
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +  A +LF+ +P ++V +WNAMI  YA  G    A++L   M ++   P+E
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266

Query: 241 TTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           +T  +++++C   G +E     H+     GF   ++L    +   ++   G   ++ +A 
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHSWIDDHGF--GSNLKIVNSLMDLYSKCG---ELETAC 321

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE L  KDV+SW  +I  Y++     +   LF  ML+SG +P+++T + +L  C+H G
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKM 405
            ++ GR     + +       A    + L D+  + G ++ A +V + +
Sbjct: 382 AIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 132/282 (46%), Gaps = 34/282 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA-ES 62
           +   G ++ A KLFDE+   D VS  +MI+ +    +  +A  LF+ M ++  NI   ES
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT--NIRPDES 267

Query: 63  AM---IDGYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            M   +    ++G ++  R+V     D  +  N+    SL+  Y K  +++    LF+  
Sbjct: 268 TMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEG- 326

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA------------- 162
            L  K+V+SW T++ G  H  L  +  ++    + +G   N +T L+             
Sbjct: 327 -LLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDI 385

Query: 163 -REYFVQMPNKDIVAWNA------MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
            R   V +  +   A NA      +I  Y   G++  A ++FN +  +++ +WNAMI  +
Sbjct: 386 GRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           A +G   AA  + + M +    P++ T   +L++C   GML+
Sbjct: 446 AMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLD 487


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 236/471 (50%), Gaps = 47/471 (9%)

Query: 34  VFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
           ++ +  ++ +A A F AMP   RNI++ + +I+G+V+ G +D A KVFDE+ E NV +W 
Sbjct: 1   MYFKMGEIQEAIAFFNAMP--MRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWN 58

Query: 94  SLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           +++SG  +    + G  LF  M     L +  +  +V+ GCA                  
Sbjct: 59  AMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCA------------------ 100

Query: 152 GLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           GL  +   K    Y ++   + ++V  +++   Y+ +G++ +  ++   M  RNV  WN 
Sbjct: 101 GLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNT 160

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLG 267
           +I   A+NG     + L N+M  S   P++ T  S+++S      + +    HA AI+ G
Sbjct: 161 LIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAG 220

Query: 268 -------FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
                       S+  KC C            +  +  A    E  D V W++MI AY  
Sbjct: 221 ANSAVAVLSSLISMYSKCGC------------LEDSMKALLDCEHPDSVLWSSMIAAYGF 268

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG G +   LF +M + G   +++TF+ +L  CSH GL EKG   F LM   YG KPR E
Sbjct: 269 HGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLE 328

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R+G + EA  ++  MP  E D V+   LL ACR+H +  MA    E ++ 
Sbjct: 329 HYTCVVDLLGRSGCLDEAEAMIRSMPL-EADVVIWKTLLSACRIHRNADMATRTAEEILR 387

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           L P  S  YVL +N+HA+   W + ++VR  M +R VKK    S +EVK +
Sbjct: 388 LNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNR 438



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 30/269 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+FDEM + +  +  +M++  ++         LFR M E     + +   +  
Sbjct: 37  GDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHE--LGFLPDEFTLGS 94

Query: 68  YVK--AG-RVDEARK-----VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            ++  AG R   A K     V    YE N+   +SL   Y K+  + EG ++   M  ++
Sbjct: 95  VLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAM--RI 152

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT------------------KL 161
           +NVV+W T++ G A NG    +  +      +GL  + +T                  ++
Sbjct: 153 RNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQI 212

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
             E      N  +   +++I+ Y   G +  + +        +   W++MI  Y  +G  
Sbjct: 213 HAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRG 272

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A+ L   M Q     N+ T  S+L +C
Sbjct: 273 EEAVHLFEQMEQEGLGGNDVTFLSLLYAC 301


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/509 (30%), Positives = 252/509 (49%), Gaps = 29/509 (5%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNIVAESAMIDG 67
           +++EA+ LF  M   D V+C S++  +  N  L +A+ LF R      R+  A +AMI  
Sbjct: 151 RLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAA 210

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K  RVD A  +F +I   N  SW+ L+  Y +   +D  ++ FDRMP +  + +++T 
Sbjct: 211 YGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQR--DSIAFTA 268

Query: 128 VVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI--- 174
           +    +  G           ++ ++VI+W  +  G  R       R  F  M ++ +   
Sbjct: 269 MTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATT 328

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V    ++  Y   G +  A  + + MP R   +W AMI  YA+NG    A+ L   M   
Sbjct: 329 VVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLE 388

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLG----FEQETSLTYKCTCHYVFWDWGFQ 290
              P++ T  S++ SC  +    L   +  R+     F Q   L       Y     G  
Sbjct: 389 GAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMY-----GKC 443

Query: 291 LDVNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFV 347
            ++  AR  FE   L  + VV+WTAMI AY+ +G G +   LF  M +  GT+P+ +TF+
Sbjct: 444 GNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFL 503

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VLS CSH G +E+  + F  M   +G  P  +HY CL D+L RAG++ EA +++ +   
Sbjct: 504 SVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKD 563

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E D V   A L AC+++GD+  +    +R+ EL+P +    VL +NV+AA+G   + A+
Sbjct: 564 FEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVAR 623

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           +R +M+   VKK A  S IE+  + H  +
Sbjct: 624 IRNEMKSSGVKKFAGRSWIEINNRVHEFM 652



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 203/483 (42%), Gaps = 94/483 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G    A  +F+ +  P+  S + +I  ++ +  +  A ALF +MP    +    + 
Sbjct: 52  FGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGF--DAFTWNI 109

Query: 64  MIDGYVKAGRVDEARKVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           MI  Y +  R+D+AR++F  +  G +V SW  L++GY +  +++E   LF RMP  L + 
Sbjct: 110 MIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMP--LWDT 167

Query: 123 VSWTTVVLGCAHNGLIAKLEVI-------------------------------------- 144
           V+ T+V+ G AHNG +A+ + +                                      
Sbjct: 168 VTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQI 227

Query: 145 ------SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
                 SW+ +     +N    LA++ F +MP +D +A+ AM     D G +  A E+  
Sbjct: 228 KLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLR 287

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            +   +V  WNA+++ Y+R G      +L +       M + T  T+++    G L N+ 
Sbjct: 288 YLSAVDVIAWNALLEGYSRTGDLDEVRRLFSA------MEHRTVATTVVA---GTLVNLY 338

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
                             KC              V+ AR   + +  +  VSWTAMI AY
Sbjct: 339 G-----------------KCG------------RVDDARRVLDAMPVRTSVSWTAMIAAY 369

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + +G+  +   LF  M   G +P +IT + V+  C+  G +  G++    +  +  F   
Sbjct: 370 AQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQS 429

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               + +  +  + G ++ A  V   +P   R  V   A++ A   +G       +GE  
Sbjct: 430 LMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNG-------VGEEA 482

Query: 439 IEL 441
           IEL
Sbjct: 483 IEL 485



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 65/358 (18%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID + K G  D AR VF+ +   N YSW+ +I  Y  + ++ + R LFD MP    +  
Sbjct: 48  LIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMP--GFDAF 105

Query: 124 SWTTVVLGCAH-----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +W  ++   A            +G+I+  +V+SW  +  G  R+   + A   F +MP  
Sbjct: 106 TWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLW 165

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLM---PQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           D V   +++  Y   G++A+A ELF+ +     R+    NAMI  Y +N    A + L  
Sbjct: 166 DTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKN----ARVDLAE 221

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            +F    + N  + + +L                          LTY    H        
Sbjct: 222 GLFAQIKLRNAASWSLLL--------------------------LTYAQNGH-------- 247

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
            LD+  A+ +F+R+  +D +++TAM    S+ G      R    ML+  +  D I +  +
Sbjct: 248 -LDL--AKKSFDRMPQRDSIAFTAMTAVLSDQGE----LRGAREMLRYLSAVDVIAWNAL 300

Query: 350 LSDCSHAGLVEKGRKTFNLMS-RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           L   S  G +++ R+ F+ M  R       A     L ++  + G+V +A RV+  MP
Sbjct: 301 LEGYSRTGDLDEVRRLFSAMEHRTVATTVVA---GTLVNLYGKCGRVDDARRVLDAMP 355



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 32/261 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRN 57
           +G  G+V +A ++ D M     VS  +MI  + +N +  +A  LF+ M      P     
Sbjct: 338 YGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITL 397

Query: 58  I-VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           I V +S  + G +  G+   AR     ++  ++    ++I+ Y K   ++  R +F+ +P
Sbjct: 398 ISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVP 457

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           L+ ++VV+WT ++   A NG+  + +E+     +  G E N +T L              
Sbjct: 458 LRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFL-------------- 503

Query: 176 AWNAMITAYVDAGNMAQASELFNLM-PQRNVWT----WNAMIDRYARNGPEGAAMKLLNL 230
              ++++A    G + QA E F  M P   V      +  ++D   R G  G A KL  L
Sbjct: 504 ---SVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKL--L 558

Query: 231 MFQSRFMPNETTCTSILTSCE 251
           +    F  +     + L++C+
Sbjct: 559 LRHKDFEADVVCWIAFLSACQ 579


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 229/437 (52%), Gaps = 19/437 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A +A++  Y   G ++ A KVFD+I + NV +WTSLI+G        E  R++  M 
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198

Query: 117 L--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L     N ++   V++ CA +     L    W    TG       ++  + F    N ++
Sbjct: 199 LWSVAPNEITMVNVLVACARS---RDLNAGRWVHDRTG-------QMGLDPFQSNSNFNV 248

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +   A++  Y   G++  A +LFN MP RN+  WN+MI  Y + G    A+ L + M  +
Sbjct: 249 ILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIA 308

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDV 293
            F P++ T   ++ +C  +   +   AL     +  +T+LT          D +    D 
Sbjct: 309 GFDPDKATFLCVIGACAHLGALVSGQALH---AYVSKTNLTDDTAIGTALVDMYAKSGDA 365

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSD 352
             A+  F  L+ KDV +WT++I+  + HGHG +    F +M + +   PDEIT++GVLS 
Sbjct: 366 ERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSA 425

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH G VE G+  F  M   +G +P  +HY C+ D+L RAG++ EA R+V KMP  E + 
Sbjct: 426 CSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPV-EPNT 484

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            +  ALL  C+++ ++ +AD +  R+ EL+   SG YVL +N++A    W+E    R+ M
Sbjct: 485 AIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELM 544

Query: 473 -ERRVKKVASFSQIEVK 488
            ER+++K    S +E+K
Sbjct: 545 KERKIQKSLGHSSVEMK 561



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 51/391 (13%)

Query: 56  RNIVAESAMID--GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           ++++  S ++D   Y  +G ++ A+ VF++I   ++Y W S+I GY  +   DE   ++ 
Sbjct: 35  QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94

Query: 114 RM------------PLKLKNVVSWTTVVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTK 160
            M            P  LK         LG C HN ++            TG E      
Sbjct: 95  EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVK-----------TGFEV----- 138

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
                       D+ A  A++  Y   G+M  A ++F+ +P+ NV  W ++I     N  
Sbjct: 139 ------------DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQ-ETSLTY 276
              A+++   M      PNE T  ++L +C     +      H    ++G +  +++  +
Sbjct: 187 PSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNF 246

Query: 277 KCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                    D   +   + +AR  F ++  +++V+W +MI AY+ +G   +   LF+ M 
Sbjct: 247 NVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMR 306

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            +G  PD+ TF+ V+  C+H G +  G+     +S+           + L D+  ++G  
Sbjct: 307 IAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKT-NLTDDTAIGTALVDMYAKSGDA 365

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + A +V S++   ++D     +L+    +HG
Sbjct: 366 ERAQQVFSEL--QKKDVTAWTSLIIGLAMHG 394



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 123/272 (45%), Gaps = 20/272 (7%)

Query: 172 KDIVAWNAMI--TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           +D++  + ++   AY D+GN+  A  +FN + + +++ WN+MI  Y+ +     A+ +  
Sbjct: 35  QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94

Query: 230 LMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            M Q  + P+  T   +L +C    G       H   ++ GFE +    Y  T   +   
Sbjct: 95  EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVD---VYAATA--LLQM 149

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    D+ +A   F+ +   +VV+WT++I    ++    +  R++  M      P+EIT 
Sbjct: 150 YAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITM 209

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY-------SCLADILRRAGQVKEAM 399
           V VL  C+ +  +  GR   +   +  G  P   +        + + D+  + G +K A 
Sbjct: 210 VNVLVACARSRDLNAGRWVHDRTGQ-MGLDPFQSNSNFNVILATAIVDMYAKCGSLKTAR 268

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            + +KMP   R+ V   +++GA   +G    A
Sbjct: 269 DLFNKMP--HRNLVAWNSMIGAYNQYGQANEA 298



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 119/272 (43%), Gaps = 35/272 (12%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAE---------ALFRAMPESQRNI 58
           EA +++ +M      P+ ++  +++    R+ DL              L      S  N+
Sbjct: 189 EAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNV 248

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +  +A++D Y K G +  AR +F+++   N+ +W S+I  Y +  Q +E   LF  M + 
Sbjct: 249 ILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIA 308

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               +  ++  V+  CAH G +   + +      T L                   D   
Sbjct: 309 GFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNL-----------------TDDTAI 351

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SR 235
             A++  Y  +G+  +A ++F+ + +++V  W ++I   A +G    A+     M + + 
Sbjct: 352 GTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTA 411

Query: 236 FMPNETTCTSILTSCE--GMLENMLAHALAIR 265
            +P+E T   +L++C   G +E+   H ++++
Sbjct: 412 LIPDEITYIGVLSACSHVGKVEDGKNHFISMK 443


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 229/444 (51%), Gaps = 49/444 (11%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           ++ +++   SLISGY      + G R+FD    + K+VVSWT ++ G   N   + LE +
Sbjct: 134 FDSDLFVRNSLISGYSNCGLFEFGSRVFD--GTEDKDVVSWTAMIDGFVRND--SSLEAM 189

Query: 145 SWTTMC--TGLERNAMT-----KLARE------------YFVQMPNK--DIVAWNAMITA 183
           ++      +G+  N MT     K  R+            ++++      D+   ++++  
Sbjct: 190 TYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDM 249

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G    A ++F+ MP RNV TW A+I  Y +       M +   M +S   PNE T 
Sbjct: 250 YGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTL 309

Query: 244 TSILTSCE---GMLENMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDV 293
           +S+L++C     +      H   I+   E  T++         KC C            +
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGC------------L 357

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A L FERL  K+V +WTAMI  ++ HG+      LF  ML S   P+E+TF+ VLS C
Sbjct: 358 EEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSAC 417

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +H GLVE+GR+ F  M   +  +P+A+HY+C+ D+  R G ++EA  ++ +M P E  + 
Sbjct: 418 AHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERM-PMEPTNA 476

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V GAL G+C +H D  +  Y   R+I+LQPS SG Y L AN+++    WD+ A+VRK+M 
Sbjct: 477 VWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMK 536

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           +++V K    S IEVKGK H  +A
Sbjct: 537 DQQVVKSPGCSWIEVKGKLHEFIA 560



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 61/297 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +   G  +  +++FD     D VS  +MI  F+RN    +A   F  M  S       
Sbjct: 146 SGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEM 205

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + ++   S+++D Y K G  D+A+KVFDE
Sbjct: 206 TVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDE 265

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
           +   NV +WT+LI+GY + R  ++G  +F+ M LK     N  + ++V+  CAH G + +
Sbjct: 266 MPSRNVVTWTALIAGYVQGRCFEKGMFVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHR 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              +    +   +E N                       +I  Y   G + +A  +F  +
Sbjct: 325 GRRVHCYVIKNSIEINTTVG-----------------TTLIDFYAKCGCLEEAILVFERL 367

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            ++NV+TW AMI+ +A +G    A+ L + M  S   PNE T   +L++C   G++E
Sbjct: 368 REKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVE 424


>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
          Length = 572

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 224/445 (50%), Gaps = 33/445 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D  +  S++ ++    D      +  +  E+  ++V+ + ++ GY + G +  AR+ FD 
Sbjct: 127 DAFAVNSLLAMYAALRDAASMRGVLESCAEAA-DVVSWNTVVAGYARCGELGNARRAFDG 185

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +   N  SW++++  Y  A Q+D  R +FDR P                      A   V
Sbjct: 186 MPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP---------------------AAGRSV 224

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           ++W +M  GL R+ +  LAR+ F +MP +++V+WNAM+  Y   G++  A ELF+ MP++
Sbjct: 225 VTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEK 284

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAH 260
           +V +W  M+  YAR G    A++L   M      PNE T  S+ ++C     + E   AH
Sbjct: 285 DVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAH 344

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           A   + G   +           ++   G + DV  A   F  L+ K+V +W A+I   + 
Sbjct: 345 AFIGKRGMVLDDGFNLGAALIDMYAKCG-RPDV--AAKVFRSLDRKNVSAWNALIAGLAA 401

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G   +   +F +M  S  KPD +TFV VL+ C+ AGLV++GR+ F  MS  +G +P  +
Sbjct: 402 NGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELK 461

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY C+ D+L RAG V EA  +V  M P   D  VL  LLGACR+     +A+ +  R+  
Sbjct: 462 HYGCMVDLLGRAGLVDEAEELVRGM-PMAPDDKVLATLLGACRVRRRPDVAERVRRRIQS 520

Query: 441 L---QPSSSGAYVLSANVHAARGEW 462
           L   QPS   +Y + ++V A    W
Sbjct: 521 LNTKQPSRE-SYFMISDVRATADRW 544



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 22/263 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A + FD M + +  S ++M+  +     L  A  +F   P + R++V  ++M+ G
Sbjct: 174 GELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAPAAGRSVVTWNSMVAG 233

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             + G +  ARK+FDE+   N+ SW +++ GY     VD  R LFD MP   K+VVSWT 
Sbjct: 234 LARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMP--EKDVVSWTC 291

Query: 128 VVLGCAHNGLIAK-LEV-------------ISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           +V G A  G  A+ LE+             ++  ++ +   R A  K  R     +  + 
Sbjct: 292 MVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRG 351

Query: 174 IV---AWN---AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +V    +N   A+I  Y   G    A+++F  + ++NV  WNA+I   A NG     + +
Sbjct: 352 MVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDV 411

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
              M  S   P+  T  S+L +C
Sbjct: 412 FEQMKVSDEKPDSVTFVSVLAAC 434



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 41/176 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE---------- 53
           +   G V  A +LFD M + D VS   M++ + R     +A  LFR M            
Sbjct: 265 YAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTM 324

Query: 54  -----------------------SQRNIVAE------SAMIDGYVKAGRVDEARKVFDEI 84
                                   +R +V +      +A+ID Y K GR D A KVF  +
Sbjct: 325 VSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSL 384

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLI 138
              NV +W +LI+G            +F++M +  +  + V++ +V+  CA  GL+
Sbjct: 385 DRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLV 440


>gi|449446907|ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 456

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 36/432 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N +  ++++D Y K G + +A  +F  I + ++ +WTS+I GY K   +D+ + LFD+M 
Sbjct: 50  NKIVLTSLMDMYAKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMG 109

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +N  SWTT+V G A+           W  M          K A++ +  MP K+ V+
Sbjct: 110 --QRNSFSWTTMVAGYAN-----------WGNM----------KAAKQLYDAMPEKNPVS 146

Query: 177 WNAMITAYVDAGNMAQASELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
             AMI  Y   G++A+A  +F   L+P  +     AM+  Y++NG    A+++   M + 
Sbjct: 147 QLAMIAGYGRCGDVAEAERIFGEILVPDSSCCA--AMVACYSQNGYGKEAIEMYKQMKEK 204

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRL--GFEQETSLTYKCTCHYVFWDWGFQLD 292
               NE      L++C  + +  +A  L  ++  G    T        H     +G   +
Sbjct: 205 NLGTNEVALVGALSACVQLGDVEMASKLIDQVDEGCCDRTLFVSNALIHK-HSKFG---N 260

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A+  F R++ +DVV+++ +I+A ++HG   +   LF++M + G KP++I F+GVL+ 
Sbjct: 261 IERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEEEGIKPNQICFIGVLNA 320

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+HAGL+E+G K F LM + +G +P+  HY+C+ D+L RAG+V+ A  V+      E D 
Sbjct: 321 CAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIK--GAREIDA 378

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
              G+LLGAC++HG++ + +   + L E++P ++G YVL AN +A   EW+E  +VR  M
Sbjct: 379 KTWGSLLGACKIHGNLEVGEIAAKHLFEMEPENTGNYVLLANTYAQMKEWNEAEKVRNVM 438

Query: 473 -ERRVKKVASFS 483
            ER +KK   +S
Sbjct: 439 VERGIKKFPGYS 450



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 161/364 (44%), Gaps = 61/364 (16%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           + +   S++ ++ +   +  AE+LF A+ +  ++IVA ++MI GY K G +D+A+ +FD+
Sbjct: 50  NKIVLTSLMDMYAKCGFILDAESLFFAIDD--KDIVAWTSMIRGYSKLGMMDDAQDLFDK 107

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE- 142
           + + N +SWT++++GY     +   ++L+D MP   KN VS   ++ G    G +A+ E 
Sbjct: 108 MGQRNSFSWTTMVAGYANWGNMKAAKQLYDAMP--EKNPVSQLAMIAGYGRCGDVAEAER 165

Query: 143 -----VISWTTMCTGL----ERNAMTKLAREYFVQMPNKD-------------------- 173
                ++  ++ C  +     +N   K A E + QM  K+                    
Sbjct: 166 IFGEILVPDSSCCAAMVACYSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGD 225

Query: 174 -------------------IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                              +   NA+I  +   GN+ +A E FN M  R+V T++ +I  
Sbjct: 226 VEMASKLIDQVDEGCCDRTLFVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIA 285

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQET 272
            A +G    A+ L + M +    PN+     +L +C   G++E    +   +R GF  E 
Sbjct: 286 LADHGKAKEALDLFSKMEEEGIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEP 345

Query: 273 SLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
               Y C    +    G   +V  A    +     D  +W +++ A   HG+  +V  + 
Sbjct: 346 QKGHYACMVDLL----GRAGEVEMAYNVIKGAREIDAKTWGSLLGACKIHGN-LEVGEIA 400

Query: 332 ARML 335
           A+ L
Sbjct: 401 AKHL 404



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 42/233 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAE 61
           +G  G V EA ++F E+  PD   CA+M+  + +N    +A  +++ M E     N VA 
Sbjct: 154 YGRCGDVAEAERIFGEILVPDSSCCAAMVACYSQNGYGKEAIEMYKQMKEKNLGTNEVAL 213

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
              +   V+ G V+ A K+ D++ EG     ++   +LI  + K   ++  +  F+RM  
Sbjct: 214 VGALSACVQLGDVEMASKLIDQVDEGCCDRTLFVSNALIHKHSKFGNIERAQEEFNRM-- 271

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI--- 174
           K ++VV+++T+++  A +G                       K A + F +M  + I   
Sbjct: 272 KDRDVVTYSTLIIALADHG---------------------KAKEALDLFSKMEEEGIKPN 310

Query: 175 -VAWNAMITAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNG 219
            + +  ++ A   AG + Q  + F LM       PQ+  +    M+D   R G
Sbjct: 311 QICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYA--CMVDLLGRAG 361



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 25/202 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +K A +L+D M + +PVS  +MI  + R  D+ +AE +F  +     +  A  AM+  
Sbjct: 127 GNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDSSCCA--AMVAC 184

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           Y + G   EA +++ ++ E N+     +    +S   +   V+   +L D+         
Sbjct: 185 YSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKLIDQ--------- 235

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
               V  GC    L     +I   +    +ER      A+E F +M ++D+V ++ +I A
Sbjct: 236 ----VDEGCCDRTLFVSNALIHKHSKFGNIER------AQEEFNRMKDRDVVTYSTLIIA 285

Query: 184 YVDAGNMAQASELFNLMPQRNV 205
             D G   +A +LF+ M +  +
Sbjct: 286 LADHGKAKEALDLFSKMEEEGI 307


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 162/534 (30%), Positives = 264/534 (49%), Gaps = 69/534 (12%)

Query: 7    TGKVKEATKLFDEMSQPDPVSCASMITVFLRNH-------------------DLPK---- 43
            +G+V  A KLFDE+   D VS  SMI+  + N                    DL      
Sbjct: 601  SGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNS 660

Query: 44   --------AEALFRAMPES------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                    + +L RA+          R ++  + ++D Y K G +++A + F+++ +  V
Sbjct: 661  VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720

Query: 90   YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCA-HNGLIAKLEVISW 146
             SWTSLI+ Y +    D+  RLF  M  K    +V S T+V+  CA  N L    +V ++
Sbjct: 721  VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780

Query: 147  TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                  + +N M        + +P       NA++  Y   G+M +A  +F+ +P +++ 
Sbjct: 781  ------IRKNNMA-------LCLP-----VSNALMDMYAKCGSMEEAYLVFSQIPVKDIV 822

Query: 207  TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
            +WN MI  Y++N     A+KL   M Q    P+  T   +L +C  +    +    H   
Sbjct: 823  SWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGRGIHGCI 881

Query: 264  IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            +R G+  E  +       YV         +  ARL F+ +  KD+++WT MI     HG 
Sbjct: 882  LRNGYSSELHVANALIDMYVKCG-----SLVHARLLFDMIPEKDLITWTVMISGCGMHGL 936

Query: 324  GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
            G +    F +M  +G KPDEITF  +L  CSH+GL+ +G   FN M      +P+ EHY+
Sbjct: 937  GNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYA 996

Query: 384  CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            C+ D+L R G + +A  ++  MP  + D  + GALL  CR+H DV +A+ + E + EL+P
Sbjct: 997  CMVDLLARTGNLSKAYNLIETMPI-KPDATIWGALLCGCRIHHDVELAEKVAEHVFELEP 1055

Query: 444  SSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
             ++G YVL AN++A   +W+E  ++R+++ +R +KK    S IEV+GK  T ++
Sbjct: 1056 DNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVS 1109



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 209/464 (45%), Gaps = 37/464 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCAS-MITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAM 64
           G ++E  ++FD +   + V   + M++ + +  D  ++  LF+ M +     N    S +
Sbjct: 500 GALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCI 559

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWT----SLISGYFKARQVDEGRRLFDRMPLKLK 120
           +  +   GRV E +++   +Y+    S+     SLI+ YFK+ +VD   +LFD   L  +
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE--LGDR 617

Query: 121 NVVSWTTVVLGCAHNG------------LIAKLEV-----ISWTTMCTGLERNAMTKLAR 163
           +VVSW +++ GC  NG            LI ++ V     ++    C  +   ++ +   
Sbjct: 618 DVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH 677

Query: 164 EYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
              V+   +++++  N ++  Y   GN+  A + F  M Q+ V +W ++I  Y R G   
Sbjct: 678 GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYD 737

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A++L   M      P+  + TS+L +C     N L     +   + ++ ++        
Sbjct: 738 DAIRLFYEMESKGVSPDVYSMTSVLHAC--ACGNSLDKGRDVH-NYIRKNNMALCLPVSN 794

Query: 283 VFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
              D +     +  A L F ++  KD+VSW  MI  YS +    +  +LFA M K  ++P
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKE-SRP 853

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D IT   +L  C     +E GR     + R  G+       + L D+  + G +  A R+
Sbjct: 854 DGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHA-RL 911

Query: 402 VSKMPPHERDHVVLGALLGACRLH--GDVRMADYIGERLIELQP 443
           +  M P E+D +    ++  C +H  G+  +A +   R+  ++P
Sbjct: 912 LFDMIP-EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKP 954



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 157/360 (43%), Gaps = 31/360 (8%)

Query: 68  YVKAGRVDEARKVFDEIYEGN-VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           YV  G + E R++FD I   N V+ W  ++S Y K     E   LF +M        S+T
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 127 -TVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            + +L C A  G + + + I                    Y +   + + V  N++I  Y
Sbjct: 556 FSCILKCFATLGRVGECKRIHGCV----------------YKLGFGSYNTVV-NSLIATY 598

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
             +G +  A +LF+ +  R+V +WN+MI     NG   +A++    M   R   +  T  
Sbjct: 599 FKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLV 658

Query: 245 SILTSCEGMLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           + + +C  +    L  AL    ++  F +E  + +  T   ++   G   ++N A  AFE
Sbjct: 659 NSVAACANVGSLSLGRALHGQGVKACFSRE--VMFNNTLLDMYSKCG---NLNDAIQAFE 713

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           ++  K VVSWT++I AY   G      RLF  M   G  PD  +   VL  C+    ++K
Sbjct: 714 KMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDK 773

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR   N + R           + L D+  + G ++EA  V S++P   +D V    ++G 
Sbjct: 774 GRDVHNYI-RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV--KDIVSWNTMIGG 830


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 257/508 (50%), Gaps = 43/508 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A  +F  MP   R++ + +AM+      GR+D A  +F+ + + ++
Sbjct: 204 SVLNMYGKCGDSETATTVFERMP--VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI 261

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG---------- 136
            SW ++I+GY +     +  +LF RM        +  + T+V+  CA+ G          
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 137 LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKD--IVAWNAMITAYVDAGNM 190
            I + E+   + +   L     ++   + AR    Q    D  ++++ A++  YV  G+M
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A E+F +M  R+V  W AMI  Y +NG    A+ L   M      PN  T  ++L+ C
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441

Query: 251 EGML---ENMLAHALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFERLE 304
             +         H  AIR   EQ +S++      Y     + W        AR  F+++ 
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPW--------ARRMFDQVC 493

Query: 305 -AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             K+ ++WT+MI+A + HG G +   LF  ML++G +PD IT+VGVLS CSHAG V +G+
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGK 553

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
           + ++ +   +   P   HY+C+ D+L RAG   EA   + +MP  E D +  G+LL ACR
Sbjct: 554 RYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV-EPDAIAWGSLLSACR 612

Query: 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV-RKKMERRVKKVASF 482
           +H +  +A+   E+L+ + P++SGAY   ANV++A G W + A++ + + E+ V+K   F
Sbjct: 613 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 672

Query: 483 SQIEVKGKDHTLLA-----PMREMGYVV 505
           S   ++ K H   A     P R+  Y +
Sbjct: 673 SWTHIRSKIHVFGADDVVHPQRDAVYAM 700



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 169/372 (45%), Gaps = 48/372 (12%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L  A  LF  +P ++RN+   ++++  + K+GR+ +AR VF E+ E +  SWT ++ G  
Sbjct: 81  LRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLN 140

Query: 101 KARQVDEGRRL--------FDRMPLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTT 148
           +A +  E  +         F      L NV+S   V     +G   +  + KL + S   
Sbjct: 141 RAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVP 200

Query: 149 MCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           +   +     +   ++ A   F +MP + + +WNAM++     G M  A  LF  MP R+
Sbjct: 201 VANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRS 260

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLA---H 260
           + +WNAMI  Y +NG +  A+KL + M  +S   P+E T TS+L++C  +    +    H
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 261 ALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLDVN---------------- 294
           A  +R      + +T      Y             D   + D+N                
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 295 --SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
             SAR  F  +  +DVV+WTAMI+ Y  +G   +   LF  M+  G +P+  T   VLS 
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 353 CSHAGLVEKGRK 364
           C+    ++ G++
Sbjct: 441 CASLACLDYGKQ 452



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 33/302 (10%)

Query: 162 AREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           AR  F ++P   +++  WN++++ +  +G +A A  +F  MP+R+  +W  M+    R G
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGF-------E 269
             G A+K L  M    F P + T T++L+SC       +    H+  ++LG         
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 270 QETSLTYKC----TCHYVF----------WDWGFQLDVNSARL-----AFERLEAKDVVS 310
              ++  KC    T   VF          W+    L+ +  R+      FE +  + +VS
Sbjct: 204 SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 263

Query: 311 WTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           W AMI  Y+ +G   +  +LF+RML +S   PDE T   VLS C++ G V  G++    +
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            R       ++  + L     ++G V+ A R++ +    + + +   ALL      GD+ 
Sbjct: 324 LRTE-MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 430 MA 431
            A
Sbjct: 383 SA 384


>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 529

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 228/424 (53%), Gaps = 35/424 (8%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +V+ ++++   +++G +  AR +FD++   +V SW S+++G  KA ++D    LFD+MP 
Sbjct: 121 LVSRNSLLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPE 180

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           +  N  SW  V+ G   +G + +                     ARE F QMP +  ++W
Sbjct: 181 R--NAASWNAVICGLIAHGHLTR---------------------AREMFEQMPVRSNISW 217

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             MI+ Y  AG++  A+ LF  M  +N ++ WNAMI  YA+NG    A+ + N M +   
Sbjct: 218 ITMISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHV 277

Query: 237 --MPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +PNE T +S+ ++C   G L   +   +  + LG E +  L    T     +    Q+
Sbjct: 278 CVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDDHLR---TALVDLYTKSGQI 334

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D   A   F+ L  +DVVS++AMI+    +G   +   LF  M  +   P+ ++FVG+LS
Sbjct: 335 D--RAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLS 392

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             +HAGLVE+ R  F  MS  Y  +P  EHY+ + D+L R+G++ EA +++ +MP   R 
Sbjct: 393 AYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRA 452

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V GALL +CRLH +V + + I  +  E  P  SG Y+L  N++A+  +WD+  ++RK 
Sbjct: 453 S-VWGALLLSCRLHNNVELGEVIASKCFEQAPGESGYYILLGNIYASANKWDKVRRLRKT 511

Query: 472 MERR 475
           M+ R
Sbjct: 512 MKER 515



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 23/263 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A  LFD+M   D VS  SM+    +   L +A  LF  MPE  RN  + +A+I 
Sbjct: 134 SGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPE--RNAASWNAVIC 191

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +  G +  AR++F+++   +  SW ++ISGY KA  V     LF+RM  K  ++ +W 
Sbjct: 192 GLIAHGHLTRAREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENK-NDLYAWN 250

Query: 127 TVVLGCAHNG-------------------LIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
            ++   A NG                   L  +    S T+ C+ L         + + V
Sbjct: 251 AMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMV 310

Query: 168 QMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +  + D     A++  Y  +G + +A +LF  + +R+V +++AMI     NG    A+ 
Sbjct: 311 SLGIELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIG 370

Query: 227 LLNLMFQSRFMPNETTCTSILTS 249
           L N M  +  +PN  +   +L++
Sbjct: 371 LFNEMSDANILPNAVSFVGLLSA 393



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 20/267 (7%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P+  +V+ N+++ + + +G++  A  LF+ MP R+V +WN+M+   A+ G    A++L +
Sbjct: 117 PHSLLVSRNSLLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFD 176

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                  MP     +     C G++ +   H    R  FEQ   +  +    ++    G+
Sbjct: 177 Q------MPERNAASWNAVIC-GLIAH--GHLTRAREMFEQ---MPVRSNISWITMISGY 224

Query: 290 QL--DVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEI 344
               DV +A   FER+E K D+ +W AMI  Y+ +G   +   +F RMLK      P+E 
Sbjct: 225 AKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEK 284

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TF  V S CS  G +  G    + M  + G +      + L D+  ++GQ+  A  +   
Sbjct: 285 TFSSVTSACSQLGNLRFGLWVQSFMV-SLGIELDDHLRTALVDLYTKSGQIDRAFDLFKG 343

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMA 431
           +   +RD V   A++  C ++G +  A
Sbjct: 344 L--SKRDVVSYSAMIVGCGMNGKLNEA 368



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++ ++  + +A  LF+ +  S+R++V+ SAMI G    G+++EA  +F+E+ + N+
Sbjct: 323 ALVDLYTKSGQIDRAFDLFKGL--SKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANI 380

Query: 90  Y----SWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                S+  L+S Y  A  V+E R  F  M  K K
Sbjct: 381 LPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYK 415


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/508 (29%), Positives = 254/508 (50%), Gaps = 43/508 (8%)

Query: 8    GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
            G  + A KLF EM     +PD ++ AS++        L     +   + ES  Q ++   
Sbjct: 566  GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625

Query: 62   SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
            +A+I+ Y++ G + +A +VF  +   NV SWT++I G+    +  +   LF +M      
Sbjct: 626  NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFK 685

Query: 116  PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            P+K     ++++++  C  +  + + + +    + +G E                  D  
Sbjct: 686  PVK----STFSSILKACMSSACLDEGKKVIAHILNSGYEL-----------------DTG 724

Query: 176  AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
              NA+I+AY  +G+M  A ++F+ MP R++ +WN MI  YA+NG  G A++    M +  
Sbjct: 725  VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 236  FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             + N+ +  SIL +C     + E    HA  ++   + +  +       Y          
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCG-----S 839

Query: 293  VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            +  A+  F+    K+VV+W AMI AY+ HG   +    F  M K G KPD  TF  +LS 
Sbjct: 840  LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899

Query: 353  CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            C+H+GLV +G + F+ +   +G  P  EHY CL  +L RAG+ +EA  ++++M P   D 
Sbjct: 900  CNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQM-PFPPDA 958

Query: 413  VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
             V   LLGACR+HG+V +A++     ++L   +   YVL +NV+AA G WD+ A++R+ M
Sbjct: 959  AVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVM 1018

Query: 473  E-RRVKKVASFSQIEVKGKDHTLLAPMR 499
            E R ++K    S IEV    H  +A  R
Sbjct: 1019 EGRGIRKEPGRSWIEVDNIIHEFIAADR 1046



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 203/476 (42%), Gaps = 68/476 (14%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR 73
           +K+ +   Q DP    S++ ++ +  DLP A  +F  +   +R++V+ + M+  Y +   
Sbjct: 207 SKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI--YRRDVVSYNTMLGLYAQKAY 264

Query: 74  VDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLF-----DRMPLKLKNVVS 124
           V+E   +F ++    +     ++ +L+  +     +DEG+R+      + +   ++   +
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTA 324

Query: 125 WTTVVLGC-----AHNGL--IAKLEVISWTTMCTGLERNAMTKLAREYFVQM-------- 169
             T+ + C     A   L   A  +V+ +  +   L ++   + A E + QM        
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMN 384

Query: 170 -------------------------------PNKDIVAWNAMITAYVDAGNMAQASELFN 198
                                           + D+   N++I+ Y   G++ +A ELFN
Sbjct: 385 RTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFN 444

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLE 255
            MP+R++ +WNA+I  YAR    G AMKL   M      P   T   +L++C       +
Sbjct: 445 TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
             + H   +R G +    L       Y          +  A+  FE   A+D++SW +MI
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCG-----SIMEAQNVFEGTRARDIISWNSMI 559

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
             ++ HG     ++LF  M K G +PD+ITF  VL  C +   +E GR+   L+  + G 
Sbjct: 560 AGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIES-GL 618

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           +      + L ++  R G +++A  V   +    R+ +   A++G     G+ R A
Sbjct: 619 QLDVNLGNALINMYIRCGSLQDAYEVFHSL--RHRNVMSWTAMIGGFADQGEDRKA 672



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI   N +I  YV   +++ A ++F  MP+R+V +WN++I  YA+ G +  A +L   M 
Sbjct: 116 DIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 175

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            + F+P++ T  SILT+C    E       H+  I  G++++  +       Y     G 
Sbjct: 176 TAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY-----GK 230

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D+ SAR  F  +  +DVVS+  M+  Y+   +  +   LF +M   G  PD++T++ +
Sbjct: 231 CEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINL 290

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L   +   ++++G++   L     G        + LA +  R G V  A + +      +
Sbjct: 291 LDAFTTPSMLDEGKRIHKLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAFA--D 347

Query: 410 RDHVVLGALLGACRLHG 426
           RD VV  AL+ A   HG
Sbjct: 348 RDVVVYNALIAALAQHG 364



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 172/412 (41%), Gaps = 37/412 (8%)

Query: 22  QPDPVSCASMITVFL-----RNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAGRV 74
           QP P        V L     R   L +A+ +   M E+    +I   + +I+ YVK   V
Sbjct: 74  QPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 133

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGC 132
            +A +VF ++   +V SW SLIS Y +     +  +LF+ M     + + +++ +++  C
Sbjct: 134 SDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTAC 193

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                            C+  E     K+  +       +D    N+++  Y    ++  
Sbjct: 194 -----------------CSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPS 236

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TS 249
           A ++F+ + +R+V ++N M+  YA+       + L   M      P++ T  ++L   T+
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
              + E    H LA+  G   +  +       +V        DV  A+ A E    +DVV
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCG-----DVAGAKQALEAFADRDVV 351

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            + A+I A + HGH  + F  + +M   G   +  T++ VL+ CS +  +  G    + +
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           S   G     +  + L  +  R G +  A  + + MP  +RD +   A++  
Sbjct: 412 SEV-GHSSDVQIGNSLISMYARCGDLPRARELFNTMP--KRDLISWNAIIAG 460



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 60/277 (21%)

Query: 2    SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNH---------------------- 39
            S +  +G + +A K+FD+M   D +S   MI  + +N                       
Sbjct: 731  SAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKF 790

Query: 40   ---DLPKAEALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEI 84
                +  A + F A+ E +R            ++   +A+I  Y K G ++EA++VFD  
Sbjct: 791  SFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF 850

Query: 85   YEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNVVSWTTVVLGCAHNGLI--- 138
             E NV +W ++I+ Y +     +    F   D+  +K  +  ++T+++  C H+GL+   
Sbjct: 851  TEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIK-PDGSTFTSILSACNHSGLVMEG 909

Query: 139  ----AKLE--------VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYV 185
                + LE        +  +  +   L R    + A     QMP   D   W  ++ A  
Sbjct: 910  NRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACR 969

Query: 186  DAGNMAQASELFN---LMPQRNVWTWNAMIDRYARNG 219
              GN+A A    N    +  RN   +  + + YA  G
Sbjct: 970  IHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAG 1006


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 167/592 (28%), Positives = 286/592 (48%), Gaps = 90/592 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
            S +G  G  + A ++FDEM +    D VS  S++  +++  D  +A  +F  M E    
Sbjct: 187 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 246

Query: 56  ------------------------------------RNIVAESAMIDGYVKAGRVDEARK 79
                                                ++   +A++D Y K G ++EA K
Sbjct: 247 RPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANK 306

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG 136
           VF+ +   +V SW ++++GY +  + D+   LF+++    ++L NVV+W+ V+ G A  G
Sbjct: 307 VFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL-NVVTWSAVIAGYAQRG 365

Query: 137 L-IAKLEVISWTTMCTGLERNAMTKL---------------------AREYFVQM----P 170
           L    L+V     +C G E N +T +                     A ++ + +    P
Sbjct: 366 LGFEALDVFRQMLLC-GSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDP 424

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLL 228
             D++  NA+I  Y    +   A  +F+L+P   R+V TW  +I   A++G    A++L 
Sbjct: 425 GDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF 484

Query: 229 NLMFQ--SRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYV 283
           + M Q  +  MPN  T +  L +C   G L      HA  +R  FE        C     
Sbjct: 485 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM- 543

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
              +    DV++AR+ F+ +  ++ VSWT+++  Y  HG G +  ++F  M K    PD 
Sbjct: 544 ---YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDG 600

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TFV VL  CSH+G+V++G   FN M++ +G  P AEHY+C+ D+L RAG++ EAM ++ 
Sbjct: 601 VTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIR 660

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP      V + ALL ACR++ +V + +Y   +L+EL+  + G+Y L +N++A    W 
Sbjct: 661 GMPMKPTPAVWV-ALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWK 719

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           + A++R  M+   +KK    S ++ +    T  A     PM +  Y +L+++
Sbjct: 720 DVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 771



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 179/408 (43%), Gaps = 45/408 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFD 113
           N+   + ++  Y + G  + AR+VFDE+ E   G++ SW S+++ Y +        ++F+
Sbjct: 179 NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFE 238

Query: 114 RMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL--------------ERN 156
           RM   L    + VS   V+  CA  G  ++ + +    + +GL               + 
Sbjct: 239 RMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC 298

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMI 212
            M + A + F +M  KD+V+WNAM+T Y   G    A  LF  + +     NV TW+A+I
Sbjct: 299 GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 358

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIR--LG 267
             YA+ G    A+ +   M      PN  T  S+L+ C     +L     H  AI+  L 
Sbjct: 359 AGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILN 418

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD--VVSWTAMILAYSNHGHGF 325
            ++          + +   +       +AR  F+ +  KD  VV+WT +I   + HG   
Sbjct: 419 LDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEAN 478

Query: 326 QVFRLFARMLKSGT--KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH-- 381
           +   LF++ML+      P+  T    L  C+  G +  GR+       AY  + R E   
Sbjct: 479 EALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI-----HAYVLRNRFESAM 533

Query: 382 ---YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               +CL D+  ++G V  A  V   M  H+R+ V   +L+    +HG
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNM--HQRNGVSWTSLMTGYGMHG 579


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 235/443 (53%), Gaps = 30/443 (6%)

Query: 78  RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT-TVVLGCAHNG 136
           R VF ++   N + WT+LI GY       E   L++ M  +    VS+T T +L      
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 137 LIAKL--EVISWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAM 180
           L   L  +V + T +  G        N +  +             F +M ++D+++W ++
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I AY   GNM  ASELF+ +P +++  W AM+  YA+N     A+++   M  +    +E
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 241 TTCTSILTSCEGMLENMLAH---ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T   ++++C  +     A+    +A + GF   +++        ++   G    V  A 
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCG---SVEDAY 329

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FER+E ++V S+++MI+ ++ HG       LF  MLK+  KP+ +TF+GVL+ CSHAG
Sbjct: 330 KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVL 415
           +VE+G++ F +M   +G  P  +HY+C+ D+L RAG+++EA+ +V  MP  PH     V 
Sbjct: 390 MVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGG---VW 446

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           GALLGACR+HG+  MA      L EL+P+  G Y+L +N++A+ G WD+ ++VRK M  +
Sbjct: 447 GALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAK 506

Query: 476 -VKKVASFSQIE-VKGKDHTLLA 496
            +KK    S +E  KG  H   A
Sbjct: 507 GLKKNPGCSWVEGKKGIIHEFFA 529



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 24/222 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + +ID YVK G +    +VFDE+ + +V SWTSLI  Y K   ++    LFD +P
Sbjct: 174 DLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLP 233

Query: 117 LKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMT 159
             +K++V+WT +V G A N                     ++ ++   + C  L      
Sbjct: 234 --MKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 160 KLAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
              R+   Q    P  ++V  +A+I  Y   G++  A ++F  M +RNV+++++MI  +A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
            +G  GAAM+L + M ++   PN  T   +LT+C   GM+E 
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 116/287 (40%), Gaps = 64/287 (22%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------ 54
            G ++ A++LFD +   D V+  +M+T + +N    +A  +F  M  +            
Sbjct: 219 VGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGV 278

Query: 55  ---------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
                                        N+V  SA+ID Y K G V++A KVF+ + E 
Sbjct: 279 ISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER 338

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVI 144
           NVYS++S+I G+           LFD M LK +   N V++  V+  C+H G++ + + +
Sbjct: 339 NVYSYSSMIVGFAMHGLAGAAMELFDEM-LKTEIKPNRVTFIGVLTACSHAGMVEQGQQL 397

Query: 145 ---------------SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
                           +  M   L R    + A      MP N     W A++ A    G
Sbjct: 398 FAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHG 457

Query: 189 N--MAQ--ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           N  MAQ  AS LF L P   +  +  + + YA  G      K+  LM
Sbjct: 458 NPDMAQIAASHLFELEPN-GIGNYILLSNIYASAGRWDDVSKVRKLM 503


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 227/459 (49%), Gaps = 42/459 (9%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP- 116
           +   +A+I  YV  G +  A+KVFD + E +V SW S+I GY++  +  +   LF  M  
Sbjct: 148 LFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQA 207

Query: 117 --LKLKNVVSWTTVVLGC---------------AHNGLIAKLEVISWTTMCTGLERNAMT 159
             ++  +V     +   C                 +G++  L +    T+     R  M 
Sbjct: 208 INVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYL--GNTLIDMYGRRGMI 265

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
             A   F QM  K+IV+WNAMI  Y   GN+  A +LFN MP R+V +W +MI  Y+   
Sbjct: 266 DFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAK 325

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---------EGMLENMLAHALAIRLGFEQ 270
               A+KL   M  S   P+E T  + L++C         E + + +  H +   + F  
Sbjct: 326 QHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDV-FVG 384

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
            + +   C C  V            A   F  ++ +D VSWT++I   + +G       +
Sbjct: 385 NSLIDMYCKCGVV----------EKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNV 434

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F +MLK G  P   TFVGVL  C+H GLV+KG + F  M   Y   P  +HY C+ D+L 
Sbjct: 435 FDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLC 494

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           R+G +  A   + KMP    D V+   LL AC+LHG++ +A+ + ++L+ L PS++G YV
Sbjct: 495 RSGYLDMAYNFIKKMPI-VPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYV 553

Query: 451 LSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVK 488
           LS++ +A    WD+  ++RK ME   ++K  ++S IEV+
Sbjct: 554 LSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 592



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 37/304 (12%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           ++I ++ R   +  A  +F  M E  +NIV+ +AMI GY K G +  A+K+F+E+   +V
Sbjct: 254 TLIDMYGRRGMIDFAGRVFYQMKE--KNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDV 311

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I GY  A+Q  E  +LF  M + +   + ++  T +  CAH G +   E     
Sbjct: 312 ISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGE----- 366

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                    A+    R++ ++    D+   N++I  Y   G + +A ++FN M  R+  +
Sbjct: 367 ---------AVHDYIRKHDIK---SDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS 414

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W ++I   A NG   +A+ + + M +    P   T   +L +C        AH   +  G
Sbjct: 415 WTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLAC--------AHVGLVDKG 466

Query: 268 FEQETSL--TYKCTCHYVFWDWGFQLDVNSARL--AFERLE----AKDVVSWTAMILAYS 319
            E   S+  TY+       +     L   S  L  A+  ++      DVV W  ++ A  
Sbjct: 467 VEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACK 526

Query: 320 NHGH 323
            HG+
Sbjct: 527 LHGN 530



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 9/220 (4%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++ +A  +FN + +  +  WN MI   +++     A+   N M+      +  T   +  
Sbjct: 62  SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFK 121

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           SC     + +  +    +++LGFE    ++      YV +      ++  A+  F+ +  
Sbjct: 122 SCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFG-----ELAMAQKVFDGMLE 176

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +DVVSW ++I  Y       +V  LF  M     + D +T +  +S        E G   
Sbjct: 177 RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 236

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
              +   +G        + L D+  R G +  A RV  +M
Sbjct: 237 VKYIDE-HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQM 275


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 263/529 (49%), Gaps = 54/529 (10%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--------PESQ 55
           +G  G ++ + KLFD M   D VS  S+I+ + +  ++ +   L + M        P++ 
Sbjct: 204 YGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTF 263

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            ++++ +A   G +K GR    + +    Y  + +  TSLI  Y K  ++D   R+F+R 
Sbjct: 264 GSVLSVAAS-RGELKLGRCLHGQILRAGFYL-DAHVETSLIVVYLKGGKIDIAFRMFERS 321

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVI-----------------SWTTMCTGL-ERNA 157
               K+VV WT ++ G   NG   K   +                 S  T C  L   N 
Sbjct: 322 --SDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNL 379

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
            T +      Q    D+   N+++T Y   G++ Q+S +F++M +R++ +WNAM+  YA+
Sbjct: 380 GTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQ 439

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQ---- 270
           NG    A+ L N M      P+  T  S+L  C    +  L    H+  IR G       
Sbjct: 440 NGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILV 499

Query: 271 ETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
           +TSL    C C           D+++A+  F ++ + D+VSW+A+I+ Y  HG G    R
Sbjct: 500 DTSLVDMYCKCG----------DLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALR 549

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            +++ L+SG KP+ + F+ VLS CSH GLVE+G   +  M++ +G  P  EH++C+ D+L
Sbjct: 550 FYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLL 609

Query: 390 RRAGQVKEAMRVVSKMPPHERDHV--VLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
            RAG+V+EA  V  K  P   D V  VLG +L ACR +G+  + D I   ++ L+P  +G
Sbjct: 610 SRAGRVEEAYNVYKKKFP---DPVLDVLGIILDACRANGNNELGDTIANDILMLRPMDAG 666

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
            +V  A+ +A+  +W+E  +    M    +KK+  +S I++ G   T  
Sbjct: 667 NFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHGTITTFF 715



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 147/328 (44%), Gaps = 45/328 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           S++I+ Y K G  D ARKVFD + E NV  WT++I  Y +  +V E   LFD M  +   
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + V+  +++ G +    +A ++ +    +  G                    DI   N+
Sbjct: 160 PSSVTVLSLLFGVSE---LAHVQCLHGCAILYGFM-----------------SDINLSNS 199

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           M+  Y   GN+  + +LF+ M  R++ +WN++I  YA+ G     + LL  M    F   
Sbjct: 200 MLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAG 259

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGF----EQETSLTYKCTCHYVFWDWGFQLD 292
             T  S+L+      E  L    H   +R GF      ETSL        V +  G ++D
Sbjct: 260 PQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLI-------VVYLKGGKID 312

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   FER   KDVV WTAMI     +G   +   +F +MLK G KP   T   V++ 
Sbjct: 313 I--AFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITA 370

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           C+  G       ++NL +   G+  R E
Sbjct: 371 CAQLG-------SYNLGTSILGYILRQE 391



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 10/271 (3%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +++I  Y   G    A ++F+ MP+RNV  W  +I  Y+R G    A  L + M +    
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           P+  T  S+L     +      H  AI  GF  + +L+     + +   +G   ++  +R
Sbjct: 160 PSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLS-----NSMLNVYGKCGNIEYSR 214

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ ++ +D+VSW ++I AY+  G+  +V  L   M   G +    TF  VLS  +  G
Sbjct: 215 KLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRG 274

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
            ++ GR     + RA GF   A   + L  +  + G++  A R+  +    ++D V+  A
Sbjct: 275 ELKLGRCLHGQILRA-GFYLDAHVETSLIVVYLKGGKIDIAFRMFER--SSDKDVVLWTA 331

Query: 418 LLGACRLHGDVRMADYIGERLIE--LQPSSS 446
           ++     +G    A  +  ++++  ++PS++
Sbjct: 332 MISGLVQNGSADKALAVFRQMLKFGVKPSTA 362


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 230/457 (50%), Gaps = 30/457 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S ++D Y K G + +AR+VF E+    V  + +LI+G  + + +++ + LF  M  +  +
Sbjct: 185 SPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDR--D 242

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVI----------------SWTTMCTGLERNAMTKLARE 164
            ++WTT+V G   NGL +  L+V                 S  T C  L      K    
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302

Query: 165 YFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +   +D +   +A++  Y    ++  A  +F  M  RN+ +W AMI  Y +N     
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTC 280
           A++  + M      P++ T  S+++SC  +    E    H LA+  G      + Y    
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-----MRYITVS 417

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           + +   +G    +  A   F+ +   D VSWTA++  Y+  G   +   LF +ML +G K
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLK 477

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD +TF+GVLS CS AGLVEKG   F+ M + +G  P  +HY+C+ D+  R+G+ KEA  
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEE 537

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            + +M PH  D      LL +CRL G++ +  +  E L+E  P +  +YVL  ++HAA+G
Sbjct: 538 FIKQM-PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKG 596

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +W E A +R+ M +R+VKK    S I+ K K H   A
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSA 633



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 167/403 (41%), Gaps = 67/403 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y K+GR+  AR+VFDE+ + N+++  +L+S    +R V +  RLF  MP   ++ V
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAV 111

Query: 124 SWTTVVLGCAHNGLIA------------------KLEVISWTTMCTGLERNAMTK----- 160
           S+  ++ G +  G  A                  ++ + +   + + L   A+       
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 161 -----LAREYFVQMPNKDIVA----------------------WNAMITAYVDAGNMAQA 193
                     FV  P  D+ A                      +N +IT  +    +  A
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LF LM  R+  TW  M+    +NG +  A+ +   M       ++ T  SILT+C  +
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGAL 291

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA---FERLEAKD 307
               E    HA   R  +E    +       Y            S RLA   F R+  ++
Sbjct: 292 AALEEGKQIHAYITRTWYEDNVFVGSALVDMYS--------KCRSIRLAEAVFRRMTCRN 343

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           ++SWTAMI+ Y  +    +  R F+ M   G KPD+ T   V+S C++   +E+G + F+
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
            ++   G        + L  +  + G +++A R+  +M  H++
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 21/206 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N+   SA++D Y K   +  A  VF  +   N+ SWT++I GY +    +E  R F  
Sbjct: 310 EDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 115 MPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M +       +T  +V+  CA+   + +        + +GL R                 
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY---------------- 413

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            I   NA++T Y   G++  A  LF+ M   +  +W A++  YA+ G     + L   M 
Sbjct: 414 -ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 233 QSRFMPNETTCTSILTSCE--GMLEN 256
            +   P+  T   +L++C   G++E 
Sbjct: 473 ANGLKPDGVTFIGVLSACSRAGLVEK 498



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ---R 56
           +G     +EA + F EM     +PD  +  S+I+       L +  A F  +       R
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMR 412

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            I   +A++  Y K G +++A ++FDE+   +  SWT+L++GY +  +  E   LF++M 
Sbjct: 413 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 117 LK-LK-NVVSWTTVVLGCAHNGLIAK-------------LEVIS--WTTMCTGLERNAMT 159
              LK + V++  V+  C+  GL+ K             +  I   +T M     R+   
Sbjct: 473 ANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRF 532

Query: 160 KLAREYFVQMPNK-DIVAWNAMITAYVDAGNMA----QASELFNLMPQ 202
           K A E+  QMP+  D   W  ++++    GNM      A  L    PQ
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580


>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 558

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/441 (31%), Positives = 240/441 (54%), Gaps = 38/441 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N + ++A++D Y K G V +AR VFD I + +V +WT++I GY KA ++ + R LFD M 
Sbjct: 149 NKIVQTALLDMYAKCGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNM- 207

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +N  +WTT+V G A+ G +                     K A E +  M  KD V 
Sbjct: 208 -GERNSFTWTTMVAGYANYGDM---------------------KAAMELYDVMNGKDEVT 245

Query: 177 WNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           W AMI  Y   GN+++A  +F+ +    N  T  A++  YA+NG    A+++   M +++
Sbjct: 246 WVAMIAGYGKLGNVSEARRIFDEITVPWNPSTCAALLACYAQNGHAREAIEMYEKMRRAK 305

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               +      +++C  + +  ++++L   I  GF ++T +      H        Q   
Sbjct: 306 IKVTDVAMVGAISACAQLRDIRMSNSLTYNIEEGFCEKTHIVSNALIH-------MQSKC 358

Query: 294 NSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            +  LA   F  +  +D+ +++AMI A++ HG       LF +M + G KP+++TFVGVL
Sbjct: 359 GNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVL 418

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CS +GL+E+G + F +M+  YG +P  EHY+C+ D+L RAGQ+++A  ++ K      
Sbjct: 419 NACSTSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLI-KENSTSA 477

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D    G+LL ACR++G+V + +     L E+ P+ SG YVL AN +A+  +W+   +V+K
Sbjct: 478 DATTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKK 537

Query: 471 KMERR-VKKVASFSQIEVKGK 490
            M ++ +KK + +S I+ + K
Sbjct: 538 LMSKKGMKKPSGYSWIQRETK 558


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 226/457 (49%), Gaps = 42/457 (9%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP--- 116
             +A+I  YV  G +  A+KVFD + E +V SW S+I GY++  +  +   LF  M    
Sbjct: 109 VSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAIN 168

Query: 117 LKLKNVVSWTTVVLGC---------------AHNGLIAKLEVISWTTMCTGLERNAMTKL 161
           ++  +V     +   C                 +G++  L +    T+     R  M   
Sbjct: 169 VRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYL--GNTLIDMYGRRGMIDF 226

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A   F QM  K+IV+WNAMI  Y   GN+  A +LFN MP R+V +W +MI  Y+     
Sbjct: 227 AGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQH 286

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC---------EGMLENMLAHALAIRLGFEQET 272
             A+KL   M  S   P+E T  + L++C         E + + +  H +   + F   +
Sbjct: 287 AEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDV-FVGNS 345

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +   C C  V            A   F  ++ +D VSWT++I   + +G       +F 
Sbjct: 346 LIDMYCKCGVV----------EKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFD 395

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           +MLK G  P   TFVGVL  C+H GLV+KG + F  M   Y   P  +HY C+ D+L R+
Sbjct: 396 QMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRS 455

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G +  A   + KMP    D V+   LL AC+LHG++ +A+ + ++L+ L PS++G YVLS
Sbjct: 456 GYLDMAYNFIKKMPI-VPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLS 514

Query: 453 ANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVK 488
           ++ +A    WD+  ++RK ME   ++K  ++S IEV+
Sbjct: 515 SSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 37/304 (12%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           ++I ++ R   +  A  +F  M E  +NIV+ +AMI GY K G +  A+K+F+E+   +V
Sbjct: 213 TLIDMYGRRGMIDFAGRVFYQMKE--KNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDV 270

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I GY  A+Q  E  +LF  M + +   + ++  T +  CAH G +   E     
Sbjct: 271 ISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGE----- 325

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                    A+    R++ ++    D+   N++I  Y   G + +A ++FN M  R+  +
Sbjct: 326 ---------AVHDYIRKHDIK---SDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVS 373

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W ++I   A NG   +A+ + + M +    P   T   +L +C        AH   +  G
Sbjct: 374 WTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLAC--------AHVGLVDKG 425

Query: 268 FEQETSL--TYKCTCHYVFWDWGFQLDVNSARL--AFERLE----AKDVVSWTAMILAYS 319
            E   S+  TY+       +     L   S  L  A+  ++      DVV W  ++ A  
Sbjct: 426 VEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACK 485

Query: 320 NHGH 323
            HG+
Sbjct: 486 LHGN 489



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 9/220 (4%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++ +A  +FN + +  +  WN MI   +++     A+   N M+      +  T   +  
Sbjct: 21  SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFK 80

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           SC     + +  +    +++LGFE  + ++      YV +      ++  A+  F+ +  
Sbjct: 81  SCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFG-----ELAMAQKVFDGMLE 135

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +DVVSW ++I  Y       +V  LF  M     + D +T +  +S        E G   
Sbjct: 136 RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYL 195

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
              +   +G        + L D+  R G +  A RV  +M
Sbjct: 196 VKYIDE-HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQM 234


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 265/513 (51%), Gaps = 31/513 (6%)

Query: 7   TGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G    A ++F EM    +P+  +  ++I+ F     LP+   +   +  +    ++V  
Sbjct: 186 SGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVA 245

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+I+ Y K G   EAR+VFD++ + ++ SW  +I  Y +     E   L+ ++ ++   
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFK 305

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL---------AREY 165
           +   ++ +++  C+    +A+  ++    +  GL+       A+  +         AR+ 
Sbjct: 306 RTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKV 365

Query: 166 FVQMPNKDIVAWNAMITAYVDAG---NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           F  M N+D VAW+ +I AY   G   +  +A ++F+ +  R+   WNAMI  Y +NG   
Sbjct: 366 FNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAV 425

Query: 223 AAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG-FEQETSLTYKCTC 280
           AAMK+   M  +  + P+  T  ++L +C  +       AL  ++   E E+++    T 
Sbjct: 426 AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTL 485

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
             ++   G    +  A   F   + K VVSWTAM+ A+S +G   +   LF  M   G K
Sbjct: 486 INMYARCG---SLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVK 542

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD++T+  +L  C+H G +E+G + F  M+  +G  P A+H++ + D+L R+G++ +A  
Sbjct: 543 PDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKE 602

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  M P E D V     L ACR+HG + + +   ER+ EL PSS+  Y+  +N++AA G
Sbjct: 603 LLESM-PFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
            W++ A VRKKME R +KK+   S IEV GK H
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLH 694



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 180/394 (45%), Gaps = 38/394 (9%)

Query: 72  GRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           G V E R + + I    +E +     +LIS Y K   + + R +F+ M  + +NVVSW  
Sbjct: 21  GDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA----------------REYFVQMPN 171
           ++   A NG   +  V+ W     GL  + +T ++                R ++  + +
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDS 140

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
              +A NA++T Y   G++  A  +F  +  R+  +WNA+I  ++++G    A+++   M
Sbjct: 141 FQSLA-NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 232 FQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
            +    PN TT  +++   ++ E + E    HA  +  GF+ +  +       Y     G
Sbjct: 200 -KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMY-----G 253

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                + AR  F++++ +D+VSW  MI  Y  +G   +   L+ ++   G K  + TFV 
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 349 VLSDCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           +L  CS    + +GR    +++ R  G        + L ++  + G ++EA +V + M  
Sbjct: 314 ILGACSSVKALAQGRLVHSHILER--GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK- 370

Query: 408 HERDHVVLGALLGACRLHG---DVRMADYIGERL 438
             RD V    L+GA   +G   D R A  + +RL
Sbjct: 371 -NRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 52/374 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++  Y + G V +A+++F  +   +  SW ++I  + ++       R+F  M   +K 
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKP 205

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N  ++  V+ G +   ++ +   I    +  G                  + D+V   A+
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVANGF-----------------DSDLVVATAL 248

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G+  +A E+F+ M +R++ +WN MI  Y +NG    A++L   +    F   +
Sbjct: 249 INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTK 308

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHY--------------- 282
            T  SIL +C   + + +  L H+  +  G + E ++       Y               
Sbjct: 309 ATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNA 368

Query: 283 ------VFWDW--------GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                 V W          G+  D   AR  F+RL ++D + W AMI  Y  +G      
Sbjct: 369 MKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAM 428

Query: 329 RLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
           ++F  M   +G KPD +TF+ VL  C+  G + + +     +S +   +      + L +
Sbjct: 429 KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE-LESNVVVTNTLIN 487

Query: 388 ILRRAGQVKEAMRV 401
           +  R G ++EA R+
Sbjct: 488 MYARCGSLEEAERL 501



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 25/219 (11%)

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P+  T  ++L SC    +     AL  R+    FE++T +       Y   D      + 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCD-----SLV 59

Query: 295 SARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            AR  FE ++   ++VVSW AMI AY+ +GH  +   L+ RM   G   D +TFV VL  
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMPPH 408
           CS    + +GR+  N +     F    + +  LA+ L     R G V +A R+   +   
Sbjct: 120 CSS---LAQGREIHNRV-----FYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSL--Q 169

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERL-IELQPSSS 446
            RD     A++ A    GD   A  I + +  +++P+S+
Sbjct: 170 TRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNST 208


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 201/368 (54%), Gaps = 30/368 (8%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A+ + ++W+ M TG  R      AR+ F + P KD V+WN MITAY   G MA A  LFN
Sbjct: 174 AREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFN 233

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            +P+R+V +WNAMI  + R G    AM+L   M +    P+  T  S+L++C        
Sbjct: 234 RIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSAC-------- 285

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL--------------DVNSARLAFERLE 304
           A +  I +G    +SL+       +F   GF +               + SA   F  + 
Sbjct: 286 ADSGDIDVGRRLHSSLSE------MFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMR 339

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            KDV +W ++I   + HGH  +   +F +MLK   +PDEITFV VL  CSH G+V+KGR+
Sbjct: 340 DKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGRE 399

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            FNLM   Y  +P  +HY C+ D+L RAG +KEA   +  M   E + V+   LLGACR+
Sbjct: 400 YFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKV-EPNSVIWRTLLGACRV 458

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFS 483
           HG++ +A++   +L++ +   SG YVL +N++A+ GEW E  ++RK M+   V K A  +
Sbjct: 459 HGEIELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRT 518

Query: 484 QIEVKGKD 491
            ++   KD
Sbjct: 519 VVDGSAKD 526



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 21/253 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A+ LFD  ++ D V+ ++MIT   R  D+  A  LF   P   ++ V+ + MI  
Sbjct: 161 GELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECP--VKDHVSWNVMITA 218

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSW 125
           Y K G +  AR +F+ I E +V SW ++ISG+ +         LF++M    +  +VV+ 
Sbjct: 219 YAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTM 278

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +++  CA +G I              + R   + L+ E F++     ++  NA+I  Y 
Sbjct: 279 LSLLSACADSGDI-------------DVGRRLHSSLS-EMFLR-TGFTVILGNALIDMYA 323

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G+M  A ++F +M  ++V TWN++I   A +G    ++ +   M + +  P+E T  +
Sbjct: 324 KCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVA 383

Query: 246 ILTSCE--GMLEN 256
           +L +C   GM++ 
Sbjct: 384 VLIACSHGGMVDK 396


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 252/501 (50%), Gaps = 39/501 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK   A  + DE+ + D V  +S++ ++ +  D+  A  +   M E   +  + SA+I G
Sbjct: 192 GKQIHARIVVDEV-EFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEP--DAFSLSALISG 248

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
           Y   GR+++AR++F       V  W S+ISGY    +  E   LF+ M  K   ++  ++
Sbjct: 249 YASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR--------------EYFVQMPN 171
            +V+  C+  G+I +   +       G   + +   A               + F  +  
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQA 368

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            D +  N+MIT Y + G +  A ++F+ MP +++ +WN+MI  +++N     A+ L   M
Sbjct: 369 YDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEM 428

Query: 232 FQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQ--ETSLT-YKCTCHYV 283
            +     ++ +   ++++C  +      E + A A  I L F+Q   TSL  + C C  V
Sbjct: 429 NKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLV 488

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                        R  F+R+   D V W +M++ Y+ +GHG +   +F +M   G +P +
Sbjct: 489 ----------EHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFVGVLS C H GLVE+GRK F  M   Y   P  EHYSC+ D+  RAG +++AM ++ 
Sbjct: 539 ITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIE 598

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +MP  + D  +  ++L  C  HG+  +   + +R+I+L P +SGAYV  + ++A   +W 
Sbjct: 599 QMPL-KADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWG 657

Query: 464 EFAQVRKKM-ERRVKKVASFS 483
             AQVRK M ++++ KV   S
Sbjct: 658 RSAQVRKLMYDKKIPKVPGCS 678



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 216/505 (42%), Gaps = 66/505 (13%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++EA +LF+EM + +  S  +MI  +L++    K+  LF +MP   ++  + + +I G+ 
Sbjct: 58  MREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP--HKDAFSWNVVISGFA 115

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-----LKNVVS 124
           K G ++ AR++F+E+   N  +W S+I GY    +  E   LF  + L        +   
Sbjct: 116 KEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFV 175

Query: 125 WTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
             TVV  C + G +               + + +  +++     +      A      M 
Sbjct: 176 LATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMK 235

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D  + +A+I+ Y   G M  A  +F L     V  WN+MI  Y  N     A++L N 
Sbjct: 236 EPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNN 295

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQE-------TSLTYKC-- 278
           M +     + +T  S+L++C   G+++  +  HA   ++GF  +         +  KC  
Sbjct: 296 MRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRR 355

Query: 279 ---TCHY-----------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
               C                   V+ + G    ++ AR  F+ + +K ++SW +MI+ +
Sbjct: 356 PDDACKLFSDLQAYDTILLNSMITVYSNCG---RIDDARQIFDTMPSKSLISWNSMIVGF 412

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA--YGFK 376
           S +    +   LF  M K G + D+ +  GV+S C+    +E G + F   +RA   G +
Sbjct: 413 SQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIF---ARATIIGLE 469

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG--ACRLHGDVRMADYI 434
                 + L D   + G V+   ++  +M   + D V   ++L   A   HG   +  + 
Sbjct: 470 FDQIISTSLVDFYCKCGLVEHGRKLFDRM--MKSDEVPWNSMLMGYATNGHGIEALNVFD 527

Query: 435 GERLIELQPSS-SGAYVLSANVHAA 458
             R + +QP+  +   VLSA  H  
Sbjct: 528 QMRSVGVQPTDITFVGVLSACDHCG 552



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 58/357 (16%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           L+  Y +   + E ++LF+ MP                       K    SW TM  G  
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMP-----------------------KRNCFSWNTMIEGYL 84

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           ++     + E F  MP+KD  +WN +I+ +   GN+  A  LFN MP +N   WN+MI  
Sbjct: 85  KSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHG 144

Query: 215 YARNGPEGAAMKL---LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271
           YA NG    A+ L   L+L    RF  +     +++ +C  +        +  R+  ++ 
Sbjct: 145 YACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEV 204

Query: 272 ----------TSLTYKC----TCHYVF----WDWGFQLD-----------VNSARLAFER 302
                      +L  KC    + ++V         F L            +N AR  F  
Sbjct: 205 EFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCL 264

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
                VV W +MI  Y  +    +   LF  M + G + D  TF  VLS CS  G++++G
Sbjct: 265 KSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQG 324

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            +    + +  GF       S L D+  +  +  +A ++ S +  +  D ++L +++
Sbjct: 325 IQVHAHVYKV-GFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAY--DTILLNSMI 378



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 54/260 (20%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++  Y    +M +A +LF  MP+RN ++WN MI+ Y ++G +G +++L    F S  M
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLEL----FDS--M 99

Query: 238 PNETTCT-SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           P++   + +++ S                 GF +E +L                     A
Sbjct: 100 PHKDAFSWNVVIS-----------------GFAKEGNLEV-------------------A 123

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK---PDEITFVGVLSDC 353
           R  F  +  K+ ++W +MI  Y+ +G   +   LF  +  +  +    D      V+  C
Sbjct: 124 RRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGAC 183

Query: 354 SHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           ++ G ++ G++    ++     F       S L ++  + G +  A  V++ M   E D 
Sbjct: 184 TNLGALDCGKQIHARIVVDEVEFDSVLG--SSLVNLYGKCGDIDSANHVLNLMK--EPDA 239

Query: 413 VVLGALL---GACRLHGDVR 429
             L AL+    +C    D R
Sbjct: 240 FSLSALISGYASCGRMNDAR 259


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 162/547 (29%), Positives = 257/547 (46%), Gaps = 68/547 (12%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNI-VAESAMI- 65
           V +  +LF  M + D VS  ++IT F       ++  L+RA+   ES R   +  SAMI 
Sbjct: 95  VPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIM 154

Query: 66  ----------------------------------DGYVKAGRVDEARKVFDEIYEGNVYS 91
                                             D Y K G + +AR+VF E+    V  
Sbjct: 155 VASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVM 214

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVI------ 144
           + +LI+G  + + +++ + LF  M  +  + ++WTT+V G   NGL +  L+V       
Sbjct: 215 YNTLITGLLRCKMIEDAKGLFQLMVDR--DSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 145 ----------SWTTMCTGLERNAMTKLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQA 193
                     S  T C  L      K    Y  +   +D +   +A++  Y    ++  A
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             +F  M  RN+ +W AMI  Y +N     A++  + M      P++ T  S+++SC  +
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANL 392

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               E    H LA+  G      + Y    + +   +G    +  A   F+ +   D VS
Sbjct: 393 ASLEEGAQFHCLALVSGL-----MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTA++  Y+  G   +   LF +ML +G KPD +TF+GVLS CS AGLVEKG   F+ M 
Sbjct: 448 WTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQ 507

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           + +G  P  +HY+C+ D+  R+G+ KEA   + +M PH  D      LL +CRL G++ +
Sbjct: 508 KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM-PHSPDAFGWATLLSSCRLRGNMEI 566

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
             +  E L+E  P +  +YVL  ++HAA+G+W E A +R+ M +R+VKK    S I+ K 
Sbjct: 567 GKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626

Query: 490 KDHTLLA 496
           K H   A
Sbjct: 627 KVHIFSA 633



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 167/403 (41%), Gaps = 67/403 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y K+GR+  AR+VFDE+ + N+++  +L+S    +R V +  RLF  MP   ++ V
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAV 111

Query: 124 SWTTVVLGCAHNGLIA------------------KLEVISWTTMCTGLERNAMTK----- 160
           S+  ++ G +  G  A                  ++ + +   + + L   A+       
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 161 -----LAREYFVQMPNKDIVA----------------------WNAMITAYVDAGNMAQA 193
                     FV  P  D+ A                      +N +IT  +    +  A
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LF LM  R+  TW  M+    +NG +  A+ +   M       ++ T  SILT+C  +
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGAL 291

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA---FERLEAKD 307
               E    HA   R  +E    +       Y            S RLA   F R+  ++
Sbjct: 292 AALEEGKQIHAYITRTWYEDNVFVGSALVDMYS--------KCRSIRLAEAVFRRMTCRN 343

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           ++SWTAMI+ Y  +    +  R F+ M   G KPD+ T   V+S C++   +E+G + F+
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
            ++   G        + L  +  + G +++A R+  +M  H++
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ---R 56
           +G     +EA + F EM     +PD  +  S+I+       L +  A F  +       R
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMR 412

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            I   +A++  Y K G +++A ++FDE+   +  SWT+L++GY +  +  E   LF++M 
Sbjct: 413 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 117 LK-LK-NVVSWTTVVLGCAHNGLIAK-------------LEVIS--WTTMCTGLERNAMT 159
              LK + V++  V+  C+  GL+ K             +  I   +T M     R+   
Sbjct: 473 ANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRF 532

Query: 160 KLAREYFVQMPNK-DIVAWNAMITAYVDAGNMA----QASELFNLMPQ 202
           K A E+  QMP+  D   W  ++++    GNM      A  L    PQ
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/522 (27%), Positives = 258/522 (49%), Gaps = 65/522 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G++K + K+F++++  + V   SMI  +++N    +   LF  M E+             
Sbjct: 202 GEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLV 261

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + +    ++++D YVK G +  AR+VF+E    ++ 
Sbjct: 262 MACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLV 321

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
            WT++I GY     V+E   LF +M  + +K N V+  +V+ GC   GL+  LE+     
Sbjct: 322 MWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGC---GLVGNLEL----- 373

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
              G   + ++       +++   D    NA++  Y        A  +F +  ++++  W
Sbjct: 374 ---GRSIHGLS-------IKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAW 423

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
           N++I  +++NG    A+ L + M     MPN  T  S+ ++C  +    +    HA +++
Sbjct: 424 NSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVK 483

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           LGF   +S+         +   G   D  SARL F+ +E K+ ++W+AMI  Y   G   
Sbjct: 484 LGFLASSSVHVGTALLDFYAKCG---DAESARLIFDTIEEKNTITWSAMIGGYGKQGDTK 540

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF  MLK   KP+E TF  VLS CSH G+V +G+K F+ M + Y F P  +HY+C+
Sbjct: 541 GSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCM 600

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++++A+ ++ KMP  + D    GA L  C +H    + + + +++++L P  
Sbjct: 601 VDMLARAGELEQALDIIEKMPI-QPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDD 659

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           +  YVL +N++A+ G W +  +VR  M++R + K+A  S +E
Sbjct: 660 ASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHSIME 701



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 24/315 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   + ++  Y   G   +AR VFD+I E + Y W  ++  Y    +  E  + +D   
Sbjct: 87  DISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYD--- 143

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           L +K+   +  +V   A                CT ++     K      V++P+ D V 
Sbjct: 144 LLMKHGFGYDDIVFSKA-------------LKACTEVQDLDNGKKIHCQIVKVPSFDNVV 190

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
              ++  Y   G +  + ++F  +  RNV  W +MI  Y +N      + L N M ++  
Sbjct: 191 LTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSV 250

Query: 237 MPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           + NE T  +++ +C     + +    H   I+ G E  + L       YV        D+
Sbjct: 251 LGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCG-----DI 305

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++AR  F      D+V WTAMI+ Y+++G   +   LF +M   G KP+ +T   VLS C
Sbjct: 306 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGC 365

Query: 354 SHAGLVEKGRKTFNL 368
              G +E GR    L
Sbjct: 366 GLVGNLELGRSIHGL 380


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 148/500 (29%), Positives = 252/500 (50%), Gaps = 39/500 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK   A  + DE+ + D V  +S++ ++ +  D+  A  +   M E   +  + SA+I G
Sbjct: 192 GKQIHARIVVDEV-EFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEP--DAFSLSALISG 248

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
           Y   GR+++AR++F       V  W S+ISGY    +  E   LF+ M  K   ++  ++
Sbjct: 249 YASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR--------------EYFVQMPN 171
            +V+  C+  G+I +   +       G   + +   A               + F  +  
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQA 368

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            D +  N+MIT Y + G +  A ++F+ MP +++ +WN+MI  +++N     A+ L   M
Sbjct: 369 YDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEM 428

Query: 232 FQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQ--ETSLT-YKCTCHYV 283
            +     ++ +   ++++C  +      E + A A  I L F+Q   TSL  + C C  V
Sbjct: 429 NKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLV 488

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                        R  F+R+   D V W +M++ Y+ +GHG +   +F +M   G +P +
Sbjct: 489 ----------EHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITFVGVLS C H GLVE+GRK F  M   Y   P  EHYSC+ D+  RAG +++AM ++ 
Sbjct: 539 ITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIE 598

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +M P + D  +  ++L  C  HG+  +   + +R+I+L P +SGAYV  + ++A   +W 
Sbjct: 599 QM-PLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWG 657

Query: 464 EFAQVRKKM-ERRVKKVASF 482
             AQVRK M ++++ K  SF
Sbjct: 658 RSAQVRKLMYDKKIPKDTSF 677



 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 149/565 (26%), Positives = 275/565 (48%), Gaps = 79/565 (13%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
            G   ++ ++F+++   + +S    +  F+R  +L +A  +F  MP  +R++V+ + MI G
Sbjct: 759  GTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMP--KRDVVSWNTMISG 816

Query: 68   YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
            YV  G  D+A + F E+ +  +    +++++L+S    A +   G+++   M   ++N V
Sbjct: 817  YVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASM---IRNGV 870

Query: 124  SWTTVVLGCAHNGLIAK----------------LEVISWTTMCTGLERNAMTKLAREYFV 167
              + VV+G +  G+  K                L++ISW ++     ++    LA   FV
Sbjct: 871  DLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFV 930

Query: 168  QMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------------------- 202
             M +     D    + +IT   +  ++ +  ++F L  +                     
Sbjct: 931  LMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCN 990

Query: 203  ---------RNVWTW-----NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
                       ++ W     NAMI  YA +G    A++L  L  +    P E T + +L+
Sbjct: 991  RLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLS 1050

Query: 249  SCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            +   +L   +    H+L ++ G E +  +       Y      F L ++SA   F ++ A
Sbjct: 1051 AVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYA----KFGL-IDSAMKTFAKIGA 1105

Query: 306  KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            +D++SW  MI+  + +G   +   +F  +L  G  PDEIT  GVL  C+  GLV++G   
Sbjct: 1106 RDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSI 1165

Query: 366  FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
            F+ M + YG  P  EHY+C+ D++ R G++KEAM +V  M PHE   ++ G+LL AC ++
Sbjct: 1166 FSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELM-PHEPSGLIWGSLLCACEIY 1224

Query: 426  GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            GD+R  + + ER++EL+P SS  Y++ A  +  RG W+   +V + M E+ V+KV   S 
Sbjct: 1225 GDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSW 1284

Query: 485  IEVKGKDHTLLAPMREMGYVVLKEV 509
            I +  K+H  +    ++ ++  K++
Sbjct: 1285 IGI--KNHVFVFKENQLLHIGGKDI 1307



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 216/505 (42%), Gaps = 66/505 (13%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++EA +LF+EM + +  S  +MI  +L++    K+  LF +MP   ++  + + +I G+ 
Sbjct: 58  MREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP--HKDAFSWNVVISGFA 115

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-----LKNVVS 124
           K G ++ AR++F+E+   N  +W S+I GY    +  E   LF  + L        +   
Sbjct: 116 KEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFV 175

Query: 125 WTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
             TVV  C + G +               + + +  +++     +      A      M 
Sbjct: 176 LATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMK 235

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D  + +A+I+ Y   G M  A  +F L     V  WN+MI  Y  N     A++L N 
Sbjct: 236 EPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNN 295

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQE-------TSLTYKC-- 278
           M +     + +T  S+L++C   G+++  +  HA   ++GF  +         +  KC  
Sbjct: 296 MRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRR 355

Query: 279 ---TCHY-----------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
               C                   V+ + G    ++ AR  F+ + +K ++SW +MI+ +
Sbjct: 356 PDDACKLFSDLQAYDTILLNSMITVYSNCG---RIDDARQIFDTMPSKSLISWNSMIVGF 412

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA--YGFK 376
           S +    +   LF  M K G + D+ +  GV+S C+    +E G + F   +RA   G +
Sbjct: 413 SQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIF---ARATIIGLE 469

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG--ACRLHGDVRMADYI 434
                 + L D   + G V+   ++  +M   + D V   ++L   A   HG   +  + 
Sbjct: 470 FDQIISTSLVDFYCKCGLVEHGRKLFDRM--MKSDEVPWNSMLMGYATNGHGIEALNVFD 527

Query: 435 GERLIELQPSS-SGAYVLSANVHAA 458
             R + +QP+  +   VLSA  H  
Sbjct: 528 QMRSVGVQPTDITFVGVLSACDHCG 552



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 58/357 (16%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           L+  Y +   + E ++LF+ MP                       K    SW TM  G  
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMP-----------------------KRNCFSWNTMIEGYL 84

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           ++     + E F  MP+KD  +WN +I+ +   GN+  A  LFN MP +N   WN+MI  
Sbjct: 85  KSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHG 144

Query: 215 YARNGPEGAAMKL---LNLMFQSRFMPNETTCTSILTSCE--GMLE---NMLAHALAIRL 266
           YA NG    A+ L   L+L    RF  +     +++ +C   G L+    + A  +   +
Sbjct: 145 YACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEV 204

Query: 267 GFEQE-----TSLTYKC----TCHYVF----WDWGFQLD-----------VNSARLAFER 302
            F+        +L  KC    + ++V         F L            +N AR  F  
Sbjct: 205 EFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCL 264

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
                VV W +MI  Y  +    +   LF  M + G + D  TF  VLS CS  G++++G
Sbjct: 265 KSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQG 324

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            +    + +  GF       S L D+  +  +  +A ++ S +  +  D ++L +++
Sbjct: 325 IQVHAHVYKV-GFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAY--DTILLNSMI 378



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 56/261 (21%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++  Y    +M +A +LF  MP+RN ++WN MI+ Y ++G +G +++L +       M
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFD------SM 99

Query: 238 PNETTCT-SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           P++   + +++ S                 GF +E +L                     A
Sbjct: 100 PHKDAFSWNVVIS-----------------GFAKEGNLEV-------------------A 123

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK---PDEITFVGVLSDC 353
           R  F  +  K+ ++W +MI  Y+ +G   +   LF  +  +  +    D      V+  C
Sbjct: 124 RRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGAC 183

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERD 411
           ++ G ++ G++   + +R    +   +    S L ++  + G +  A  V++ M   E D
Sbjct: 184 TNLGALDCGKQ---IHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLM--KEPD 238

Query: 412 HVVLGALL---GACRLHGDVR 429
              L AL+    +C    D R
Sbjct: 239 AFSLSALISGYASCGRMNDAR 259



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 124/286 (43%), Gaps = 36/286 (12%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNI-VAE 61
            F    +++++ ++F+E+ Q D V C +MI+ +  +     A  LF   + E+ R      
Sbjct: 986  FSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTL 1045

Query: 62   SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            S ++        VD+  ++   +     E +V   +SL+  Y K   +D   + F +  +
Sbjct: 1046 SIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAK--I 1103

Query: 118  KLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              ++++SW T+++G A+NG ++K LE+                   +E  +  P  D + 
Sbjct: 1104 GARDLISWNTMIMGLAYNGRVSKALEIF------------------KELLIGGPPPDEIT 1145

Query: 177  WNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLM 231
               ++ A    G + +   +F+ M +       +  +  ++D  +R G    AM ++ LM
Sbjct: 1146 LAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELM 1205

Query: 232  FQSRFMPNETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTY 276
                  P+     S+L +CE   +      +A R +  E ++SL Y
Sbjct: 1206 PHE---PSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPY 1248


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 259/524 (49%), Gaps = 69/524 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE------ 61
           G++K A K+F++++  + V   SMI  +++N    +   LF  M E+  N++        
Sbjct: 190 GEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN--NVLGNEYTYGT 247

Query: 62  ---------------------------------SAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                            ++++D YVK G +  AR+VF+E    +
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVD 307

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISW 146
           +  WT++I GY     V+E   LF +M  +++K N V+  +V+ GC   GLI  LE+   
Sbjct: 308 LVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC---GLIENLEL--- 361

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                G   + ++       +++   D    NA++  Y        A  +F +  ++++ 
Sbjct: 362 -----GRSVHGLS-------IKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIV 409

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
            WN++I  +++NG    A+ L + M      PN  T  S+ ++C  +    +    HA +
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYS 469

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           ++LGF   +S+         +   G   D  SARL F+ +E K+ ++W+AMI  Y   G 
Sbjct: 470 VKLGFLASSSVHVGTALLDFYAKCG---DPQSARLIFDTIEEKNTITWSAMIGGYGKQGD 526

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                 LF  MLK   KP+E TF  +LS C H G+V +G+K F+ M + Y F P  +HY+
Sbjct: 527 TIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYT 586

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+L RAG++++A+ ++ KMP  + D    GA L  C +H    + + + +++++L P
Sbjct: 587 CMVDMLARAGELEQALDIIEKMPI-QPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHP 645

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
             +  YVL +N++A+ G W++  +VR  M++R + K+A  S +E
Sbjct: 646 DDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 208/510 (40%), Gaps = 86/510 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------- 48
           S +G  G  K+A  +FD++ +PD      M+  +  N +  +   L+             
Sbjct: 84  SLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDI 143

Query: 49  ------RAMPESQR-----------------NIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                 +A  E Q                  + V  + ++D Y K G +  A KVF++I 
Sbjct: 144 VFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT 203

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEV 143
             NV  WTS+I+GY K    +EG  LF+RM     L N  ++ T+++ C     ++ L  
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK---LSALHQ 260

Query: 144 ISWTTMC---TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
             W   C   +G+E ++                     +++  YV  G+++ A  +FN  
Sbjct: 261 GKWFHGCLVKSGIELSS-----------------CLVTSLLDMYVKCGDISNARRVFNEH 303

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM--- 257
              ++  W AMI  Y  NG    A+ L   M      PN  T  S+L+ C G++EN+   
Sbjct: 304 SHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC-GLIENLELG 362

Query: 258 -LAHALAIRLGF---EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
              H L+I++G        +L +     Y   D         A+  FE    KD+V+W +
Sbjct: 363 RSVHGLSIKVGIWDTNVANALVHMYAKCYQNRD---------AKYVFEMESEKDIVAWNS 413

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I  +S +G   +   LF RM      P+ +T   + S C+  G +  G  + +  S   
Sbjct: 414 IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVG-SSLHAYSVKL 472

Query: 374 GFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           GF   +  +  + L D   + G  + A  +   +   E++ +   A++G     GD   +
Sbjct: 473 GFLASSSVHVGTALLDFYAKCGDPQSARLIFDTI--EEKNTITWSAMIGGYGKQGDTIGS 530

Query: 432 DYIGERLIELQP---SSSGAYVLSANVHAA 458
             + E +++ Q     S+   +LSA  H  
Sbjct: 531 LELFEEMLKKQQKPNESTFTSILSACGHTG 560



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 170/399 (42%), Gaps = 28/399 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   + ++  Y   G   +AR VFD+I E + Y W  ++  Y   ++  E  +L+D   
Sbjct: 75  DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYD--- 131

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           L +K+   +  +V   A                CT L+     K      V++P+ D V 
Sbjct: 132 LLMKHGFRYDDIVFSKA-------------LKACTELQDLDNGKKIHCQLVKVPSFDNVV 178

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
              ++  Y   G +  A ++FN +  RNV  W +MI  Y +N      + L N M ++  
Sbjct: 179 LTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNV 238

Query: 237 MPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           + NE T  +++ +C     + +    H   ++ G E  + L       YV        D+
Sbjct: 239 LGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCG-----DI 293

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++AR  F      D+V WTAMI+ Y+++G   +   LF +M     KP+ +T   VLS C
Sbjct: 294 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
                +E GR    L  +   +       + L  +  +  Q ++A + V +M   E+D V
Sbjct: 354 GLIENLELGRSVHGLSIKVGIWDTNVA--NALVHMYAKCYQNRDA-KYVFEMES-EKDIV 409

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
              +++     +G +  A ++  R+     + +G  V S
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVAS 448


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 158/522 (30%), Positives = 253/522 (48%), Gaps = 80/522 (15%)

Query: 13  ATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAM-------PE----------- 53
           A KLFD+  Q  D     SMI  +L     P + AL+R +       P+           
Sbjct: 29  ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88

Query: 54  -------------SQ-------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                        SQ        ++   + ++D Y K G++  AR  FDE+   +  SWT
Sbjct: 89  SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
           +LISGY +  ++D   +LFD+MP  +K+VV +  ++ G   +G +               
Sbjct: 149 ALISGYIRCGELDLASKLFDQMP-HVKDVVIYNAMMDGFVKSGDMTS------------- 194

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                   AR  F +M +K ++ W  MI  Y +  ++  A +LF+ MP+RN+ +WN MI 
Sbjct: 195 --------ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIG 246

Query: 214 RYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG----- 267
            Y +N      + L   M  +  + P++ T  S+L +        ++   A+ LG     
Sbjct: 247 GYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPA--------ISDTGALSLGEWCHC 298

Query: 268 FEQETSLTYKC-TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           F Q   L  K   C  +   +    ++  A+  F+ +  K V SW AMI  Y+ +G+   
Sbjct: 299 FVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF  M+    KPDEIT + V++ C+H GLVE+GRK F++M R  G   + EHY C+ 
Sbjct: 359 ALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMV 416

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG +KEA  +++ M P E + ++L + L AC  + D+  A+ I ++ +EL+P + 
Sbjct: 417 DLLGRAGSLKEAEDLITNM-PFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEV 487
           G YVL  N++AA   WD+F  V+  M + + KK    S IE+
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEI 517



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 144/270 (53%), Gaps = 27/270 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+  A   FDEM     VS  ++I+ ++R  +L  A  LF  MP   +++V  +AM+DG
Sbjct: 127 GKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHV-KDVVIYNAMMDG 185

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           +VK+G +  AR++FDE+    V +WT++I GY   + +D  R+LFD MP   +N+VSW T
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMP--ERNLVSWNT 243

Query: 128 VVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTKLAR----------------EYFVQMP 170
           ++ G C +      + +       T L+ + +T L+                   FVQ  
Sbjct: 244 MIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303

Query: 171 --NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL- 227
             +K +    A++  Y   G + +A  +F+ MP++ V +WNAMI  YA NG   AA+ L 
Sbjct: 304 KLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLF 363

Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           + +M + +  P+E T  +++T+C   G++E
Sbjct: 364 VTMMIEEK--PDEITMLAVITACNHGGLVE 391



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 112/291 (38%), Gaps = 75/291 (25%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A +LFDEM+    ++  +MI  +    D+  A  LF AMPE  RN+V+ + MI 
Sbjct: 189 SGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE--RNLVSWNTMIG 246

Query: 67  GYVKAGRVDEARKVFDEI----------------------------------------YE 86
           GY +  +  E   +F E+                                         +
Sbjct: 247 GYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLD 306

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
             V   T+++  Y K  ++++ +R+FD MP K                       +V SW
Sbjct: 307 KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEK-----------------------QVASW 343

Query: 147 TTMCTGLERNAMTKLAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
             M  G   N   + A + FV M      D +   A+ITA    G + +  + F++M + 
Sbjct: 344 NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM 403

Query: 204 ----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                +  +  M+D   R G    A  L+  M    F PN    +S L++C
Sbjct: 404 GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM---PFEPNGIILSSFLSAC 451


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 225/450 (50%), Gaps = 40/450 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + +++ ++ ++D Y K G +  A++VF  +   +V +  ++IS   K   V+E R LFD 
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDN 101

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M  +  N  SW +++                 T  C   + N+    AR  F   P KD+
Sbjct: 102 MTER--NSCSWNSMI-----------------TCYCKLGDINS----ARLMFDCNPVKDV 138

Query: 175 VAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           V+WNA+I  Y  +  +  A ELF LM   RN  TWN MI  Y + G  G A+ +   M  
Sbjct: 139 VSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQS 198

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWG 288
               P E T  S+L++C        AH  A+ +G     + +   L           D  
Sbjct: 199 ENVKPTEVTMVSLLSAC--------AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMY 250

Query: 289 FQLDVNSARL-AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
            +     A +  F  L  K++  W ++I+    +G G +    F  M K G KPD +TFV
Sbjct: 251 CKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFV 310

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           G+LS CSH+GL+  G++ F+ M   YG +P  EHY C+ D+L RAG +KEA+ ++  M P
Sbjct: 311 GILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM-P 369

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + + +VLG+LL AC++H D ++ + + ++L+EL P   G YV  +N++A+   WD+   
Sbjct: 370 MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNT 429

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            RK M +R V K    S IEV    H  +A
Sbjct: 430 CRKLMIKRGVHKTPGCSSIEVNNIVHEFVA 459



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 26/248 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V+EA  LFD M++ +  S  SMIT + +  D+  A  +F   P   +++V+ +A+IDG
Sbjct: 90  GYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNP--VKDVVSWNAIIDG 147

Query: 68  YVKAGRVDEARKVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV---- 122
           Y K+ ++  A+++F  +    N  +W ++IS Y +  +      +F +M  + +NV    
Sbjct: 148 YCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQM--QSENVKPTE 205

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           V+  +++  CAH G    L++  W     G  R    K+           D+V  NA+I 
Sbjct: 206 VTMVSLLSACAHLG---ALDMGEWI---HGYIRTKRLKI-----------DVVLGNALID 248

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  A ++F+ + ++N++ WN++I     NG    A+    +M +    P+  T
Sbjct: 249 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308

Query: 243 CTSILTSC 250
              IL+ C
Sbjct: 309 FVGILSGC 316


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 234/442 (52%), Gaps = 32/442 (7%)

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL----GCAHN 135
           VF ++   N + WT++I GY     + E    + RM       VS+T   L    G A N
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 136 GLIAKLEVISWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMI 181
             + K +V + T +  G        N+M  L         AR+ F +M  +D+V+W  +I
Sbjct: 158 MDLGK-QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
            AY   G+M  AS LF+ +P +++  W AM+  YA+NG    A++    M       +E 
Sbjct: 217 VAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276

Query: 242 TCTSILTSCEGMLENMLAHA-----LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           T   ++++C  +    + HA     +A R GF    ++        ++   G     + A
Sbjct: 277 TLAGVISACAQL--GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCG---SPDEA 331

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FE ++ ++V S+++MIL Y+ HG      +LF  MLK+  +P+++TF+G+LS CSHA
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLVE+GR+ F  M + +G  P  +HY+C+ D+L RAG ++EA+ +V  M P E +  V G
Sbjct: 392 GLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM-PMEPNGGVWG 450

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           ALLGACR+HG+  +A      L +L+P+  G Y+L +N++A+ G W+E +++RK + E+ 
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510

Query: 476 VKKVASFSQIEVK-GKDHTLLA 496
            KK    S  E K G+ H   A
Sbjct: 511 FKKNPGCSWFEGKNGEIHDFFA 532



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 24/221 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   ++MID YVK G +  ARKVFDE+ E +V SWT LI  Y K   ++    LFD +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKLE-------------VISWTTMCTGLERN 156
              K++V+WT +V G A NG          K++             VIS       ++  
Sbjct: 237 --SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
              +   E     P+ ++V  +A+I  Y   G+  +A ++F +M +RNV+++++MI  YA
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            +G   +A++L + M ++   PN+ T   IL++C   G++E
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 71/290 (24%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A K+FDEMS+ D VS   +I  + +  D+  A  LF  +P   +++VA +AM+ GY + G
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP--SKDMVAWTAMVTGYAQNG 254

Query: 73  RVDEARKVFDEIYE-----------------------------------------GNVYS 91
           R  EA + F ++ +                                         GNV  
Sbjct: 255 RPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVV 314

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----------IAKL 141
            ++LI  Y K    DE  ++F+ M  K +NV S+++++LG A +G           + K 
Sbjct: 315 GSALIDMYSKCGSPDEAYKVFEVM--KERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372

Query: 142 EV----ISWTTMCTGLERNAMTKLAREYFVQM-------PNKDIVAWNAMITAYVDAGNM 190
           E+    +++  + +      + +  R+ F +M       P+ D  A   M+     AG +
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA--CMVDLLGRAGCL 430

Query: 191 AQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            +A +L   MP + N   W A++     +G    A    N +F  +  PN
Sbjct: 431 EEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF--KLEPN 478



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL---DV---NSARL 298
           SIL  C    +    HA  IR G  Q         C YV       L   DV   +   L
Sbjct: 47  SILHDCTLFSQIKQVHAHIIRNGLSQ---------CSYVLTKLIRMLTKVDVPMGSYPLL 97

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++   +   WTAMI  Y+  G   +    + RM + G  P   TF  +   C  A  
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           ++ G++         GF       + + D+  + G +  A +V  +M   ERD V    L
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS--ERDVVSWTEL 215

Query: 419 LGACRLHGDVRMA 431
           + A   +GD+  A
Sbjct: 216 IVAYAKYGDMESA 228


>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 228/446 (51%), Gaps = 44/446 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++A+++ Y     + +A KVF+ +   ++ +W S++  Y    Q+D    LF+ MPLK  
Sbjct: 88  QTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLFNSMPLK-- 145

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                                ++ S+  M +G        LAR  F  M  +D V+WN+M
Sbjct: 146 ---------------------DISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSM 184

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I+AY+ AG+M +   LF  MP +N  TWN MI    ++   G  + L   M  + ++P+ 
Sbjct: 185 ISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDY 244

Query: 241 TTCTSILTSCEGMLENMLA----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            T TS+L++C G L ++      H  AI  G      +T      Y          +   
Sbjct: 245 LTVTSVLSTC-GHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCG-----SIEQG 298

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F + + KD+  W A+I A + HGHG+   ++F +M K+  +PD+ITF+G+++ CSH+
Sbjct: 299 LHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHS 358

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV++G + F  M   +G  P+ EHY C+ ++L R+G +  A++V+  M P E    +LG
Sbjct: 359 GLVQEGCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETM-PFEPGESILG 417

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPS-----SSGAYVLSANVHAARGEWDEFAQVRKK 471
           ALL AC ++ D+      GER+IEL  S     S G  ++ +N++A+ G W+E  + R+ 
Sbjct: 418 ALLSACIIYQDLE----TGERVIELVCSKAHYLSDGELMMFSNLYASCGNWEEANRWREM 473

Query: 472 MERR-VKKVASFSQIEVKGKDHTLLA 496
           M    + K A +S IEV G+    LA
Sbjct: 474 MNSTGIVKTAGYSVIEVSGRFQKFLA 499



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 26/261 (9%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +A K+F+ M   D ++  SM+  +  N  +  A  LF +MP   ++I + + MI GY 
Sbjct: 101 IGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLFNSMP--LKDISSFNIMISGYS 158

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
             G    AR +FD +   +  SW S+IS Y +A  +++G  LF  MP  +KN V+W T++
Sbjct: 159 TRGEAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMP--VKNTVTWNTMI 216

Query: 130 LGC---AHNGLIAK--------------LEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
            GC    H G++                L V S  + C  L   ++    + +   + N 
Sbjct: 217 TGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHL--GSLGTGIKIHIYAIDNG 274

Query: 173 DIVA---WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            + +     A+I  Y   G++ Q   +F     ++++ WNA+I   A +G   AA+K+  
Sbjct: 275 LVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFG 334

Query: 230 LMFQSRFMPNETTCTSILTSC 250
            M ++   P++ T   I+ +C
Sbjct: 335 KMRKNHIQPDDITFIGIINAC 355


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/479 (30%), Positives = 244/479 (50%), Gaps = 38/479 (7%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           +   +++ ++     L  A  LF  +PE  RN+V  + M++GY K+G VD AR +F+ I 
Sbjct: 220 IVATNLVHMYCVCSSLGNARVLFDEIPE--RNVVTWNVMLNGYSKSGLVDLARDLFERIP 277

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLE 142
             +V SW ++I GY +  ++ E  R++  M L+     N V    ++  C     +++ +
Sbjct: 278 AKDVVSWGTIIDGYVQIERLGEALRMYRSM-LRTGVGPNEVMIVDLISACGRTMAVSEGQ 336

Query: 143 VISWTTMCTGLERNAMTKLAREYF-------------VQMPNKD-IVAWNAMITAYVDAG 188
                 + TG +     +    +F              ++ +KD + +WNA+I+ +V  G
Sbjct: 337 QFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNG 396

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            + QA +LF+ MP+R+V++W++MI  Y++N     A++L + M      PNE T  S+ +
Sbjct: 397 MIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFS 456

Query: 249 SCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL-E 304
           +   +   +E   AH   +        +L       Y            S  +A +   E
Sbjct: 457 AIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYA--------KCGSITIALQLFYE 508

Query: 305 AKDVVS----WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
            +D VS    W A+I   + HGH     +LF+++ +   KP+ ITF+GVLS C HAGLV+
Sbjct: 509 IQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVD 568

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            G K F  M   Y  +P  +HY C+ D+L RAG++KEA  ++ KM P + D V+ G LL 
Sbjct: 569 TGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKM-PMKADVVIWGTLLA 627

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
           ACR HG+V + +   E L +L  S     VL +N++A  G WD+   VR+ M+ +R+KK
Sbjct: 628 ACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKK 686



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 209/484 (43%), Gaps = 86/484 (17%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           NI  ++++I  YVK   +  AR +FD     +  S   +++GY K+  +D  R LF++MP
Sbjct: 86  NIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMP 145

Query: 117 LKLKNVVSWTTVVLGCAHN----------------GLIAK----LEVISWTTMCTGLERN 156
             +K  VS+TT+V+G A N                G+I        VIS  +   G+   
Sbjct: 146 --IKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNC 203

Query: 157 AM-----------------TKL------------AREYFVQMPNKDIVAWNAMITAYVDA 187
            M                 T L            AR  F ++P +++V WN M+  Y  +
Sbjct: 204 RMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKS 263

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G +  A +LF  +P ++V +W  +ID Y +    G A+++   M ++   PNE     ++
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323

Query: 248 TSCEGML---ENMLAHALAIRLGFE-----QETSLTYKCTC----------------HYV 283
           ++C   +   E    H + +R GF+     Q T + +   C                H  
Sbjct: 324 SACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVS 383

Query: 284 FWDW---GFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            W+    GF  +  +  AR  F+ +  +DV SW++MI  YS +       +LF  M+  G
Sbjct: 384 SWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGG 443

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
            +P+EIT V V S  +  G + +GR     ++S +          + L D+  + G +  
Sbjct: 444 VQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLN--AALIDMYAKCGSITI 501

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--IELQPSS-SGAYVLSAN 454
           A+++  ++           A++    +HG   ++  +  +L  + ++P+S +   VLSA 
Sbjct: 502 ALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSAC 561

Query: 455 VHAA 458
            HA 
Sbjct: 562 CHAG 565



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 161/379 (42%), Gaps = 69/379 (18%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--------------- 51
           +G V  A  LF+ +   D VS  ++I  +++   L +A  ++R+M               
Sbjct: 263 SGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDL 322

Query: 52  ----------PESQR--NIVA----------ESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                      E Q+   I+           ++ +I  Y   G ++ A   F+   + +V
Sbjct: 323 ISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHV 382

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW +LISG+ +   +++ R+LFD MP   ++V SW++++ G + N        +    +
Sbjct: 383 SSWNALISGFVRNGMIEQARQLFDEMP--ERDVFSWSSMISGYSQNEQPDLALQLFHEMV 440

Query: 150 CTGLERNAMTKL-----------------AREYFV--QMPNKDIVAWNAMITAYVDAGNM 190
             G++ N +T +                 A EY +   +P  D +   A+I  Y   G++
Sbjct: 441 AGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLN-AALIDMYAKCGSI 499

Query: 191 AQASELFNLMPQR--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
             A +LF  +  R  +V  WNA+I   A +G    ++KL + + + R  PN  T   +L+
Sbjct: 500 TIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLS 559

Query: 249 SC--EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C   G+++    +   ++  +  E ++  Y C    +    G    +  A     ++  
Sbjct: 560 ACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLL----GRAGRLKEAAEMIRKMPM 615

Query: 306 K-DVVSWTAMILAYSNHGH 323
           K DVV W  ++ A   HG+
Sbjct: 616 KADVVIWGTLLAACRTHGN 634



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 57/246 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-- 53
           S F   G +++A +LFDEM + D  S +SMI+ + +N     A  LF  M      P   
Sbjct: 390 SGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEI 449

Query: 54  --------------------SQRNIVAES---------AMIDGYVKAGRVDEARKVFDEI 84
                               +   I++ S         A+ID Y K G +  A ++F EI
Sbjct: 450 TMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEI 509

Query: 85  YE--GNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAK 140
            +   +V  W ++I G       +   +LF ++  +++K N +++  V+  C H GL+  
Sbjct: 510 QDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDT 569

Query: 141 LE---------------VISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAY 184
            E               +  +  M   L R    K A E   +MP K D+V W  ++ A 
Sbjct: 570 GEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAAC 629

Query: 185 VDAGNM 190
              GN+
Sbjct: 630 RTHGNV 635



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 240 ETTCTSILTSCEGML---ENMLAHALAIRLG-----FEQETSLTYKCTCHYV-----FWD 286
           E T  S L SC  +L   +    H+L  + G     F + + +++   C  +      +D
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 287 WGFQLD----------------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
               LD                +++AR  FE++  K  VS+T M++  + +    +   +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F  M  +G  P+E+T   V+S  SH G +   R     M  A  FK   E  + +A  L 
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSHVGGILNCR-----MLHALSFKLGLEALNIVATNLV 226

Query: 391 RAGQVKEAM---RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               V  ++   RV+    P ER+ V    +L      G V +A  + ER+
Sbjct: 227 HMYCVCSSLGNARVLFDEIP-ERNVVTWNVMLNGYSKSGLVDLARDLFERI 276


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 178/607 (29%), Positives = 279/607 (45%), Gaps = 110/607 (18%)

Query: 2   SQFGCTGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAM----- 51
           S +  +G+ +EA+K F EM      +P+ VS  ++I    +N    +A ++FR M     
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 52  -PESQRNIVAESAMID-GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
            P S     A SA  +   ++ GR      +  E  + ++    SL+  Y K R V+  R
Sbjct: 359 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 418

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL-------EVISWTTMCTGLER 155
           R F    +K  ++VSW  ++ G A  G       L++++       ++I+W  + TG  +
Sbjct: 419 RKFGM--IKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 156 NAMTKLAREYFVQM------PNKDIVAW-------------------------------- 177
               K A E+F +M      PN   ++                                 
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 178 -NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I+ Y    ++  A  +F+ +  R+V  WN++I   A++G    A+ LL  M  S  
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD----WGF 289
             N  T  S L +C     + +    H   IR G +         TC+++       +G 
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD---------TCNFILNSLIDMYGR 647

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  +R  F+ +  +D+VSW  MI  Y  HG G     LF +    G KP+ ITF  +
Sbjct: 648 CGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNL 707

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSH+GL+E+G K F +M   Y   P  E Y+C+ D+L RAGQ  E +  + KM P E
Sbjct: 708 LSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-PFE 766

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            +  V G+LLGACR+H +  +A+Y    L EL+P SSG YVL AN+++A G W++ A++R
Sbjct: 767 PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIR 826

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLA--------------------PMREMGYV---- 504
             M ER V K    S IEVK K H+ +                      ++E+GYV    
Sbjct: 827 CLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTN 886

Query: 505 -VLKEVD 510
            VL++VD
Sbjct: 887 FVLQDVD 893



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 176/412 (42%), Gaps = 57/412 (13%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG V++A ++FD+MS+ +  S  +++ ++    D  +   LF  M       V E    D
Sbjct: 137 TGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-------VNEGVRPD 189

Query: 67  GYV-----------KAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRL 111
            +V           K  RV   + V+D +    +EGN     S++  + K  ++D  RR 
Sbjct: 190 HFVFPKVFKACSELKNYRV--GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 247

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           F+   ++ K+V  W  +V G    G   K L+ IS   + +G++                
Sbjct: 248 FEE--IEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL-SGVK---------------- 288

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAM 225
             D V WNA+I+ Y  +G   +AS+ F  M      + NV +W A+I    +NG +  A+
Sbjct: 289 -PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            +   M      PN  T  S +++C  +  ++L H   I     +   L           
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNL--SLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 286 DWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
           D+  +   V  AR  F  ++  D+VSW AM+  Y+  G   +   L + M   G +PD I
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           T+ G+++  +  G  +   + F  M  + G  P     + ++  L   GQV+
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNT---TTISGALAACGQVR 513



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A  +F+ M +RNV++W A+++ Y   G     +KL  LM      P+
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
                 +  +C  +    +    +   + +GFE  + +  K +   +F   G ++D+  A
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV--KGSILDMFIKCG-RMDI--A 244

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  FE +E KDV  W  M+  Y++ G   +  +  + M  SG KPD++T+  ++S  + +
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQS 304

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           G  E+  K F  M     FKP    ++ L     + G   EA+ V  KM
Sbjct: 305 GQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 257/538 (47%), Gaps = 85/538 (15%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMP----------------- 52
           +EA ++F  + +PD V C++MI+ F R HD+  +A  LF  M                  
Sbjct: 304 EEAYEVFIRIDEPDVVHCSAMISCFDR-HDMAWEALDLFVKMSGMGVKPNHYIFVGIAGV 362

Query: 53  ----------ESQRNIVAES--AMIDG--------YVKAGRVDEARKVFDEIYEGNVYSW 92
                      S    + +S  AM+ G        YVK G V +A   FD I+E + +SW
Sbjct: 363 ASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSW 422

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV-VLGCAHNGLIAKLEVISWTTMC- 150
            +++S ++     ++G R+F +M  +  +   +T V VL C  +  +  L   +    C 
Sbjct: 423 NTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTS--LMNLRFGTQVHACI 480

Query: 151 --TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
             +GL+ +  T ++R                ++  Y  +G    A  +F  + +R+ ++W
Sbjct: 481 LKSGLQND--TDVSR---------------MLVDMYAQSGCFTSACLVFEQLKERDAFSW 523

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIR 265
             ++  YA+       ++    M +    P++ T    L+ C  M      +  H+ AI+
Sbjct: 524 TVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIK 583

Query: 266 LGFEQET------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
            G+           +  KC             ++  A + F   E +D V+W  +I  YS
Sbjct: 584 SGWNSSVVSGALVDMYVKCG------------NIADAEMLFHESETRDQVAWNTIICGYS 631

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HGHG++    F +M+  G +PD ITFVGVLS CSHAGL+ +GRK F  +S  YG  P  
Sbjct: 632 QHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTM 691

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY+C+ DIL +AG++ EA  ++++MP    D  +   +LGACR+H ++ +A+   ERL 
Sbjct: 692 EHYACMVDILSKAGRLVEAESLINQMPL-APDSSIWRTILGACRIHRNIEIAERAAERLF 750

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKGKDHTLLA 496
           EL+P  + + +L +N++A  G W +  +VR   ++  VKK    S IE+ G+ H  L+
Sbjct: 751 ELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLS 808



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 31/302 (10%)

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           ++++ Y K GR+ +AR+VFD +   ++ +WT++IS +  A   D+   +F RM  +    
Sbjct: 90  SLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQE---- 145

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-KDIVAWNAMI 181
                   G A NG      + S    C+G   +  T       V++    D    ++++
Sbjct: 146 --------GIAPNGFT----LASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLV 193

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
            AY   G +  A  +   +P+R+  +WNA+++ YAR+G     M ++  +  S    ++ 
Sbjct: 194 EAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKY 253

Query: 242 TCTSILTSCEGMLENMLA------HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           T  ++L  C   +E  LA      HA  I+ G E +  L    +C  +   +   L    
Sbjct: 254 TLPTVLKCC---MELGLAKYGQSVHASVIKRGLETDNVLN---SC--LVEMYSRCLSAEE 305

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F R++  DVV  +AMI  +  H   ++   LF +M   G KP+   FVG+    S 
Sbjct: 306 AYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASR 365

Query: 356 AG 357
            G
Sbjct: 366 TG 367



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 11/239 (4%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D    ++++  Y   G +  A  +F+ MP R++  W AMI  +   G    A+ +   
Sbjct: 82  HPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFAR 141

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDW 287
           M Q    PN  T  S+L +C G   +   H +    ++L    +  +       Y     
Sbjct: 142 MNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCG- 200

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++++A      L  +  VSW A++  Y+ HG   +V  +  +++ SG +  + T  
Sbjct: 201 ----ELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLP 256

Query: 348 GVLSDCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            VL  C   GL + G+    +++ R  G +      SCL ++  R    +EA  V  ++
Sbjct: 257 TVLKCCMELGLAKYGQSVHASVIKR--GLETDNVLNSCLVEMYSRCLSAEEAYEVFIRI 313



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 150/375 (40%), Gaps = 35/375 (9%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V  S +++ Y +    +EA +VF  I E +V   +++IS + +     E   LF +M   
Sbjct: 288 VLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMS-- 345

Query: 119 LKNVVSWTTVVLGCAHNGLI-AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
                      +G   N  I   +  ++  T    L R+    + +  F  +        
Sbjct: 346 ----------GMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKG----VG 391

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +A++  YV  G +  A+  F+L+ + + ++WN ++  +         +++   M    F 
Sbjct: 392 DAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFS 451

Query: 238 PNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            N+ T  S+L  C  ++        HA  ++ G + +T ++      Y            
Sbjct: 452 ANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGC-----FT 506

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           SA L FE+L+ +D  SWT ++  Y+      +V   F  ML+   +P + T    LS CS
Sbjct: 507 SACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCS 566

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE---RD 411
               +  G +  +   ++ G+         L D+  + G + +A     +M  HE   RD
Sbjct: 567 DMASLGSGLQLHSWAIKS-GWNSSVVS-GALVDMYVKCGNIADA-----EMLFHESETRD 619

Query: 412 HVVLGALLGACRLHG 426
            V    ++     HG
Sbjct: 620 QVAWNTIICGYSQHG 634



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           AR  F+ +  +D+V+WTAMI A++  G   Q   +FARM + G  P+  T   VL  CS 
Sbjct: 104 ARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSG 163

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
                  + T  +  +        + Y  S L +     G++  A  V+  +P  ER  V
Sbjct: 164 G---SHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLP--ERSDV 218

Query: 414 VLGALLGACRLHGDVRMADYIGERLI 439
              ALL     HGD R    I E+L+
Sbjct: 219 SWNALLNGYARHGDYRRVMIIIEKLV 244


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 223/424 (52%), Gaps = 64/424 (15%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E N++   SL+  YFK       ++LFD M ++  +VVSW T++ G   +G++ K     
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR--DVVSWNTLISGYCFSGMVDK----- 211

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           AR  F  M  K++V+W+ MI+ Y   GN+ +A +LF  MP RNV
Sbjct: 212 ----------------ARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNV 255

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
            +WNAMI  YA+N     A++L   M  +    PN+ T  S+L++C        AH  A+
Sbjct: 256 VSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSAC--------AHLGAL 307

Query: 265 RLG-----FEQETSLTY-------------KCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            LG     F +   +               KC C            V  A+  F  +  +
Sbjct: 308 DLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC------------VLEAKGVFHEMHER 355

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DV+SW+ +I+  + +G+  + F  FA M++ G +P++I+F+G+L+ C+HAGLV+KG + F
Sbjct: 356 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYF 415

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           ++M + YG  P+ EHY C+ D+L RAG++ +A  +++ M P + + +V GALLG CR++ 
Sbjct: 416 DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM-PMQPNVIVWGALLGGCRIYK 474

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQI 485
           D    + +  R++EL  + SG+ V  ANV+A+ G  D+ A  R +M + +  K    S I
Sbjct: 475 DAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWI 534

Query: 486 EVKG 489
           E+  
Sbjct: 535 EINN 538



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 23/226 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A+ LF  M    R++V+ + +I GY  +G VD+AR VFD + E N+ SW+++ISGY +  
Sbjct: 181 AQKLFDEM--VVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVG 238

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLA 162
            ++E R+LF+ MP  ++NVVSW  ++ G A N   A  +E+        GL  N +T ++
Sbjct: 239 NLEEARQLFENMP--MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVS 296

Query: 163 -REYFVQMPNKDIVAW-----------------NAMITAYVDAGNMAQASELFNLMPQRN 204
                  +   D+  W                 NA+   Y   G + +A  +F+ M +R+
Sbjct: 297 VLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERD 356

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           V +W+ +I   A  G    A      M +    PN+ +   +LT+C
Sbjct: 357 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC 402



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 74/340 (21%)

Query: 188 GNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLN--LMFQSRFMPNETTCT 244
           GN+  +  +FN  +   N++ +NA++  ++++      +   N  L+  +   P+E T T
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 245 SILTSCEGM---LENMLAHALAIRLGFEQE-------TSLTYKCTCH------------- 281
           S+L +C G+   LE    H    + G E           L +K  C+             
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191

Query: 282 -YVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
             V W+     + F   V+ AR+ F+ +  K++VSW+ MI  Y+  G+  +  +LF  M 
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP 251

Query: 336 --------------------------------KSGTKPDEITFVGVLSDCSHAGLVEKGR 363
                                           + G  P+++T V VLS C+H G ++ G+
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 364 KTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
                + R    K     +  + LAD+  + G V EA  V  +M  HERD +    ++  
Sbjct: 312 WIHRFIRRN---KIEVGLFLGNALADMYAKCGCVLEAKGVFHEM--HERDVISWSIIIMG 366

Query: 422 CRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAA 458
             ++G    A      +IE  L+P+  S   +L+A  HA 
Sbjct: 367 LAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 406



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 98/257 (38%), Gaps = 67/257 (26%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +   G ++EA +LF+ M   + VS  +MI  + +N     A  LFR M          
Sbjct: 232 SGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPND 291

Query: 55  --------------------------QRN-----IVAESAMIDGYVKAGRVDEARKVFDE 83
                                     +RN     +   +A+ D Y K G V EA+ VF E
Sbjct: 292 VTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE 351

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL 141
           ++E +V SW+ +I G       +E    F  M       N +S+  ++  C H GL+ K 
Sbjct: 352 MHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDK- 410

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPN-----KDIVAWNAMITAYVDAGNMAQASEL 196
                     GL          EYF  MP        I  +  ++     AG + QA  L
Sbjct: 411 ----------GL----------EYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450

Query: 197 FNLMP-QRNVWTWNAMI 212
            N MP Q NV  W A++
Sbjct: 451 INSMPMQPNVIVWGALL 467


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 236/450 (52%), Gaps = 18/450 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR+VFD + + +  S+ S+I GY K   +    +LFD MP
Sbjct: 135 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMP 194

Query: 117 LKLKNVVSWTTVVLGCAH--NGL---------IAKLEVISWTTMCTGLERNAMTKLAREY 165
            ++KN++SW +++ G A   +GL         + + ++ISW +M  G  ++   + A+  
Sbjct: 195 REIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGL 254

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G +  A  LF+ M QR+V   N+M+  Y +N     A+
Sbjct: 255 FDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEAL 314

Query: 226 KLLNLMFQ-SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           ++ N M + S   P+ETT   +L++   +    L+ A+++ + +  E             
Sbjct: 315 EIFNDMEKDSHLSPDETTLVIVLSAIAQL--GRLSKAMSMHV-YIVEKRFPLGGKLGVAL 371

Query: 285 WDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
            D   +   +  A   FE +E K +  W AMI   + HG G   F +  ++ +   +PD 
Sbjct: 372 IDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDX 431

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF+GVL+ CSH+GLV++G   F LM R +  +PR +HY CL D+L R+G ++ A  ++ 
Sbjct: 432 ITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIE 491

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP    D V+  + L AC  H +    + + + LI     +  +YVL +N++A+ G W 
Sbjct: 492 DMPMEPND-VIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWK 550

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +  +VR  M +R++ K+   S IE+ G  H
Sbjct: 551 DVRRVRMMMKQRKLHKIPGCSWIELDGNVH 580



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 43/371 (11%)

Query: 8   GKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
           G +K A KLFD M +   + +S  SMI+ + +  D L  A  LF  MPE  +++++ ++M
Sbjct: 181 GLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPE--KDLISWNSM 238

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I+G VK GR+++A+ +FD +   +V +W ++I GY K   V   + LFD+M    ++VV+
Sbjct: 239 INGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQM--HQRDVVA 296

Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
             +++ G   N   +  LE+ +            TT+   L  +A+ +L R        V
Sbjct: 297 CNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVL--SAIAQLGRLSKAMSMHV 354

Query: 168 QMPNKDIVAWNAMITAYVD----AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            +  K       +  A +D     G++  A  +F  +  +++  WNAMI   A +G    
Sbjct: 355 YIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGEL 414

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGML-ENMLAHALAIRLGFEQETSLTYKCTC 280
           A  +L  + +    P+  T   +L +C   G++ E +L   L  R    +     Y C  
Sbjct: 415 AFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLV 474

Query: 281 HYVFWDWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLK 336
             +      +L    A+   E   +E  DV+ W + + A S H   F+   L A+  +L+
Sbjct: 475 DVLSRSGSIEL----AKHLIEDMPMEPNDVI-WRSFLSACSTH-EEFETGELVAKHLILQ 528

Query: 337 SGTKPDEITFV 347
           +G  P     +
Sbjct: 529 AGYNPSSYVLL 539



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 102/276 (36%), Gaps = 65/276 (23%)

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHAL 262
           + WNA+I  Y+       A+ L  LM ++    ++ + + +L +C   E + E M  H  
Sbjct: 67  YLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGF 126

Query: 263 AIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
             + G   +         L  KC C       GF      AR  F+R+  +D VS+ +MI
Sbjct: 127 LRKTGIWSDLFLQNCLIGLYLKCGC------LGF------ARQVFDRMPQRDSVSYNSMI 174

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
             Y                                      GL++   K F+LM R    
Sbjct: 175 DGYVK-----------------------------------CGLMKSAHKLFDLMPRE--I 197

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA---- 431
           K      S ++   + A  +  A ++ S+MP  E+D +   +++  C  HG +  A    
Sbjct: 198 KNLISWNSMISGYAQTADGLNTASKLFSEMP--EKDLISWNSMINGCVKHGRIEDAKGLF 255

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
           D +  R +    +    Y     VH A+  +D+  Q
Sbjct: 256 DVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQ 291



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           +F   E +D   W A+I +YS+     +   LF  M+++G   D+ +   VL  CS    
Sbjct: 57  SFSAGEGEDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEF 116

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           +++G +    + R  G        +CL  +  + G +  A +V  +MP  +RD V   ++
Sbjct: 117 LKEGMQIHGFL-RKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMP--QRDSVSYNSM 173

Query: 419 LGACRLHGDVRMADYIGERLIELQP 443
           +      G ++ A     +L +L P
Sbjct: 174 IDGYVKCGLMKSA----HKLFDLMP 194


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 250/502 (49%), Gaps = 41/502 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK   A  L D++ + D V  +S+I ++ +   L  A  + + M E      + SA+I G
Sbjct: 192 GKQVHARILMDDV-ELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDD--FSLSALIMG 248

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   GR+ +A ++F          W SLISGY    +  +   L + M      V S T 
Sbjct: 249 YANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTI 308

Query: 128 VVL--GCAH----------NGLIAKLEVISWTTMCTGLERNAMTKL-----AREYFVQMP 170
            V+   C+           +G + K+ +I    + +    +A +K      A + F ++ 
Sbjct: 309 TVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAF-IDAYSKCRNPNDACKLFSELK 367

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D V  N+MITAY + G +  A  +F  MP +++ +WN++I   A+N     A+ +   
Sbjct: 368 AYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGK 427

Query: 231 MFQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQETSLT---YKCTCHY 282
           M +     +  +  S++++C  +      E + A A+   L  +Q  S +   + C C  
Sbjct: 428 MNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKC-- 485

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                GF   + + R  F+ +   D VSW +M++ Y+ +G+G +   LF  M ++G +P 
Sbjct: 486 -----GF---IENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPT 537

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           +ITF GVLS C H GLVE+GRK FN+M   Y   P  EHYSC+ D+  RAG +KEA+ +V
Sbjct: 538 DITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLV 597

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             M P E D  +  ++L  C  HGD  +   + +++I+L P SS AYV  + + A  G+W
Sbjct: 598 EHM-PFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDW 656

Query: 463 DEFAQVRKKM-ERRVKKVASFS 483
           +  A VRK M E++VKK   FS
Sbjct: 657 ESSALVRKIMTEKQVKKHPGFS 678



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 191/460 (41%), Gaps = 75/460 (16%)

Query: 6   CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           C G + +A  LFDEM + +  S  +MI  ++R  D  ++  LF  MP  Q+N  + + +I
Sbjct: 54  CGGTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMP--QKNDYSWNVVI 111

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLK--LK 120
            G+ KAG +D A+K+F+E+   N  +W S+I GY +     E   LF  +   PL+    
Sbjct: 112 SGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCG 171

Query: 121 NVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLAREYF 166
           +     +V+  CA  G I               +L+ +  +++     +      A    
Sbjct: 172 DTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVL 231

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             M   D  + +A+I  Y + G M+ A  +F          WN++I  Y  N  E  A  
Sbjct: 232 KMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFA 291

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE------------------GMLENMLAHAL------ 262
           L+N M  +R   + +T T IL++C                   G++++++  +       
Sbjct: 292 LVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYS 351

Query: 263 -------AIRLGFEQE--------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                  A +L  E +        + +T  C C            +  A+  FE + +K 
Sbjct: 352 KCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGR----------IRDAKNIFETMPSKS 401

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           ++SW ++I+  + + +  +   +F +M K   + D  +   V+S C+    +E G + F 
Sbjct: 402 LISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVF- 460

Query: 368 LMSRAY--GFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             +RA   G +      + L D   + G ++   ++   M
Sbjct: 461 --ARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSM 498


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 229/448 (51%), Gaps = 37/448 (8%)

Query: 62   SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            +A+ID Y K G++DEA  +    Y+ ++ SW +++ GY K+   ++ R+  +   L  + 
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS---NKSRKALEHFSLMHEM 1093

Query: 122  VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
             +    + L  A          I  +     L++    K  + Y +++  N D+   + +
Sbjct: 1094 GIPIDEITLATA----------IKASGCLINLKQG---KQIQAYAIKLGFNNDLWVSSGV 1140

Query: 181  ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
            +  Y+  G+M  A ELF  + + +   W  MI  Y  NG E  A+ + +LM  S   P+E
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200

Query: 241  TTCTSIL--TSCEGMLEN-MLAHALAIRLGFEQE----TSLT-YKCTCHYVFWDWGFQLD 292
             T  +++  +SC   LE     HA  ++L +  +    TSL    C C            
Sbjct: 1201 YTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCG----------S 1250

Query: 293  VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            V  A   F +++ + VV W AM+L  + HGH  +   LF  M  +G +PD++TF+GVLS 
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310

Query: 353  CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            CSH+GL  +  K F+ M + YG  P  EHYSCL D L RAG+++EA  V++ M P +   
Sbjct: 1311 CSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASM-PFKASA 1369

Query: 413  VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
             +  ALLGACR  GD   A  + ++L+ L PS S AYVL +N++AA  +WD+    R  M
Sbjct: 1370 SMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMM 1429

Query: 473  E-RRVKKVASFSQIEVKGKDHTLLAPMR 499
            + + VKK   FS I+VK K H  +   R
Sbjct: 1430 KLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 153/410 (37%), Gaps = 84/410 (20%)

Query: 64   MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK-----ARQVDEGRRLFDRMPLK 118
            +I  Y K G +  AR+VFD+  + ++ +W S+++ Y +        V EG RLF  +   
Sbjct: 652  LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 119  LKNVVSWTTVVLGCAH--NGLIAKLEVISWTTMCTGLE--------------RNAMTKLA 162
              ++   T   L      +G +   E +    +  G E              +  +   A
Sbjct: 712  GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 163  REYFVQMPNKDIVAWNAMITAYV----------------------DAGNM---------- 190
            R  F +MP +D V WN M+ AYV                      D  N+          
Sbjct: 772  RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSD 831

Query: 191  -------------AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
                         A A ++F      N++ WN  +  +   G   AA+     + +S   
Sbjct: 832  VSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 238  PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
             +  T   IL++  G  +  L    HAL I+  F     ++      Y     G    V 
Sbjct: 892  HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS--KAGV---VY 946

Query: 295  SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            +A   F      D++SW  MI +Y+ +    +    F  +L+ G KPD+ T   VL  CS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 355  HAGLVEKGRKTFNLMSRAY------GFKPRAEHYSCLADILRRAGQVKEA 398
                 ++G + F L S+ +      G    +   + L D+  + G++ EA
Sbjct: 1007 TG---DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 143/359 (39%), Gaps = 42/359 (11%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-----RNIVAES 62
            G V +A  LFD+M + D V    M+  ++ N    +A   F A   S       N+    
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVI 825

Query: 63   AMIDGYVKAGRVDEARKV---------FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              ++  V   R   A +V         FD+    N+++W   ++ +  A Q+      F 
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFK 883

Query: 114  RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   L++ +   +V L      +I     +    +  G + +A+  + +  F  +    
Sbjct: 884  TL---LRSTIGHDSVTL------VIILSAAVGADDLDLGEQIHAL--VIKSSFAPV---- 928

Query: 174  IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            +   N+++  Y  AG +  A + F   P+ ++ +WN MI  YA+N  E  A+     + +
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLR 988

Query: 234  SRFMPNETTCTSILTSC----EGMLENMLA--HALAIRLGFEQETSLTYKCTCHYVFWDW 287
                P++ T  S+L +C    EG    + +  H  AI+ G   +   ++  T     +  
Sbjct: 989  DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND---SFVSTALIDLYSK 1045

Query: 288  GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            G ++D   A          D+ SW A++  Y       +    F+ M + G   DEIT 
Sbjct: 1046 GGKMD--EAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITL 1102



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 27/213 (12%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-------NGPEGAAMKLLNL 230
           N +IT Y   G++  A ++F+    R++ TWN+++  YA+       N  EG   +L  L
Sbjct: 650 NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEG--FRLFGL 707

Query: 231 MFQSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           + +  F     T   +L  C   G ++ +   H  A+++GFE +  L        ++  +
Sbjct: 708 LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELD--LFVSGALVNIYCKY 765

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD----E 343
           G    V  ARL F+++  +D V W  M+ AY  +    +  R F+   +SG  PD     
Sbjct: 766 GL---VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLH 822

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
               GV SD      V   RK      +AY  K
Sbjct: 823 CVIGGVNSD------VSNNRKRHAEQVKAYAMK 849



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 27/219 (12%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
            G +  A +LF E+S+PD V+  +MI+ ++ N D   A +++  M  S  Q +    + +I
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 66   DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                    +++ +++   +    Y  + +  TSL+  Y K   V +  R+F +M   ++ 
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM--DVRK 1265

Query: 122  VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL--------------AREYFV 167
            VV W  ++LG A +G + +   +  T    G++ + +T +              A +YF 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 168  QM-----PNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             M        +I  ++ ++ A   AG + +A  +   MP
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 229/448 (51%), Gaps = 37/448 (8%)

Query: 62   SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            +A+ID Y K G++DEA  +    Y+ ++ SW +++ GY K+   ++ R+  +   L  + 
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS---NKSRKALEHFSLMHEM 1093

Query: 122  VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
             +    + L  A          I  +     L++    K  + Y +++  N D+   + +
Sbjct: 1094 GIPIDEITLATA----------IKASGCLINLKQG---KQIQAYAIKLGFNNDLWVSSGV 1140

Query: 181  ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
            +  Y+  G+M  A ELF  + + +   W  MI  Y  NG E  A+ + +LM  S   P+E
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200

Query: 241  TTCTSIL--TSCEGMLEN-MLAHALAIRLGFEQE----TSLT-YKCTCHYVFWDWGFQLD 292
             T  +++  +SC   LE     HA  ++L +  +    TSL    C C            
Sbjct: 1201 YTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCG----------S 1250

Query: 293  VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            V  A   F +++ + VV W AM+L  + HGH  +   LF  M  +G +PD++TF+GVLS 
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310

Query: 353  CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            CSH+GL  +  K F+ M + YG  P  EHYSCL D L RAG+++EA  V++ M P +   
Sbjct: 1311 CSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASM-PFKASA 1369

Query: 413  VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
             +  ALLGACR  GD   A  + ++L+ L PS S AYVL +N++AA  +WD+    R  M
Sbjct: 1370 SMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMM 1429

Query: 473  E-RRVKKVASFSQIEVKGKDHTLLAPMR 499
            + + VKK   FS I+VK K H  +   R
Sbjct: 1430 KLKNVKKDPGFSWIDVKNKVHLFVVDDR 1457



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 132/360 (36%), Gaps = 74/360 (20%)

Query: 64   MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK-----ARQVDEGRRLFDRMPLK 118
            +I  Y K G +  AR+VFD+  + ++ +W S+++ Y +        V EG RLF  +   
Sbjct: 652  LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 119  LKNVVSWTTVVLGCAH--NGLIAKLEVISWTTMCTGLE--------------RNAMTKLA 162
              ++   T   L      +G +   E +    +  G E              +  +   A
Sbjct: 712  GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 163  REYFVQMPNKDIVAWNAMITAYV----------------------DAGNM---------- 190
            R  F +MP +D V WN M+ AYV                      D  N+          
Sbjct: 772  RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSD 831

Query: 191  -------------AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
                         A A ++F      N++ WN  +  +   G   AA+     + +S   
Sbjct: 832  VSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 238  PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
             +  T   IL++  G  +  L    HAL I+  F     ++      Y     G    V 
Sbjct: 892  HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS--KAGV---VY 946

Query: 295  SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            +A   F      D++SW  MI +Y+ +    +    F  +L+ G KPD+ T   VL  CS
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 143/359 (39%), Gaps = 42/359 (11%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-----RNIVAES 62
            G V +A  LFD+M + D V    M+  ++ N    +A   F A   S       N+    
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVI 825

Query: 63   AMIDGYVKAGRVDEARKV---------FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              ++  V   R   A +V         FD+    N+++W   ++ +  A Q+      F 
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFK 883

Query: 114  RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   L++ +   +V L      +I     +    +  G + +A+  + +  F  +    
Sbjct: 884  TL---LRSTIGHDSVTL------VIILSAAVGADDLDLGEQIHAL--VIKSSFAPV---- 928

Query: 174  IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            +   N+++  Y  AG +  A + F   P+ ++ +WN MI  YA+N  E  A+     + +
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLR 988

Query: 234  SRFMPNETTCTSILTSC----EGMLENMLA--HALAIRLGFEQETSLTYKCTCHYVFWDW 287
                P++ T  S+L +C    EG    + +  H  AI+ G   +   ++  T     +  
Sbjct: 989  DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND---SFVSTALIDLYSK 1045

Query: 288  GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            G ++D   A          D+ SW A++  Y       +    F+ M + G   DEIT 
Sbjct: 1046 GGKMD--EAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITL 1102



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 27/213 (12%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-------NGPEGAAMKLLNL 230
           N +IT Y   G++  A ++F+    R++ TWN+++  YA+       N  EG   +L  L
Sbjct: 650 NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEG--FRLFGL 707

Query: 231 MFQSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           + +  F     T   +L  C   G ++ +   H  A+++GFE +  L        ++  +
Sbjct: 708 LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELD--LFVSGALVNIYCKY 765

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD----E 343
           G    V  ARL F+++  +D V W  M+ AY  +    +  R F+   +SG  PD     
Sbjct: 766 GL---VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLH 822

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
               GV SD      V   RK      +AY  K
Sbjct: 823 CVIGGVNSD------VSNNRKRHAEQVKAYAMK 849



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 27/219 (12%)

Query: 8    GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
            G +  A +LF E+S+PD V+  +MI+ ++ N D   A +++  M  S  Q +    + +I
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 66   DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                    +++ +++   +    Y  + +  TSL+  Y K   V +  R+F +M   ++ 
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKM--DVRK 1265

Query: 122  VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL--------------AREYFV 167
            VV W  ++LG A +G + +   +  T    G++ + +T +              A +YF 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 168  QM-----PNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             M        +I  ++ ++ A   AG + +A  +   MP
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 260/518 (50%), Gaps = 38/518 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G + +A K+FD M Q D V+   +I  +++N    +A ALF+AM  S  + + +  ++ +
Sbjct: 327 GNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFL 386

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
              +K+G +   ++V   I       +VY  ++L+  YFK   V+   + F +    L +
Sbjct: 387 PSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQN--TLVD 444

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------KLAREYF 166
           V   T ++ G   NGL +  L +  W     G+  N +T              KL +E  
Sbjct: 445 VAVCTAMISGYVLNGLNVEALNLFRWLIQ-EGMVPNCLTMASVLPACAALASLKLGKELH 503

Query: 167 VQMPNK---DIVAWNAMIT-AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             +  K   ++    + IT  Y  +G +  A + F  MP ++   WN MI  +++NG   
Sbjct: 504 CDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPE 563

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCT 279
            A+ L   M  S    +  + ++ L++C     +      H   +R  F  +T +    T
Sbjct: 564 LAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVA--ST 621

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
              ++   G    +  AR  F+ ++ K+ VSW ++I AY NHG   +   LF  M+++G 
Sbjct: 622 LIDMYSKCG---KLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGI 678

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +PD +TF+ ++S C HAGLV++G   F  M+  YG   R EH++C+ D+  RAG++ EA 
Sbjct: 679 QPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAF 738

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
             +  M P   D    G+LLGACRLHG+V +A    + L+EL P++SG YVL +NVHA  
Sbjct: 739 DTIKSM-PFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGA 797

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           GEW+   +VR  M E+ V+K+  +S I+V G  H   A
Sbjct: 798 GEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSA 835



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 158/390 (40%), Gaps = 53/390 (13%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY----EGNVYSWTSLISG 98
           + E++FRA P S  ++V +              + R++  ++      G++   + ++  
Sbjct: 75  QLESMFRAFPNSDASLVKQ--------------QVRQIHAKVLVCGMNGSLTLGSRMLGM 120

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTT---VVLGCAHNGLIAKLEVISWTTM------ 149
           Y   R   +   LF R+ L      +W      +LGC    L+    ++           
Sbjct: 121 YVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTF 180

Query: 150 ------CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                 C GL    + K+  E    M  + D+   +++I  Y D G +  A  LF+ +P 
Sbjct: 181 PYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPV 240

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE-NMLA 259
           R+   WN M++ Y +NG   +A+     M  S   PN  +   +L+ C   G++   +  
Sbjct: 241 RDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQL 300

Query: 260 HALAIRLGFEQE-----TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
           H L IR GFE +     T +T    C  +F           AR  F+ +   D V+W  +
Sbjct: 301 HGLVIRSGFESDPTVANTIITMYSKCGNLF----------DARKIFDIMPQTDTVTWNGL 350

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y  +G   +   LF  M+ SG K D ITF   L     +G ++  ++  + + R +G
Sbjct: 351 IAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVR-HG 409

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
                   S L DI  + G V+ A +   +
Sbjct: 410 VPFDVYLKSALVDIYFKGGDVEMACKTFQQ 439



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 30/351 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKL 119
           S++I  Y   G + +A+ +FDE+   +   W  +++GY K    +     F  M      
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N VS+  ++  CA  G++     +    + +G E                  D    N 
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFE-----------------SDPTVANT 318

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +IT Y   GN+  A ++F++MPQ +  TWN +I  Y +NG    A+ L   M  S    +
Sbjct: 319 IITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLD 378

Query: 240 ETTCTSILTSC--EGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S L S    G L+     H+  +R G   +  L  K     +++  G   DV  A
Sbjct: 379 SITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYL--KSALVDIYFKGG---DVEMA 433

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F++    DV   TAMI  Y  +G   +   LF  +++ G  P+ +T   VL  C+  
Sbjct: 434 CKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAAL 493

Query: 357 GLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             ++ G++   +++ +  G +   +  S +  +  ++G++  A +   +MP
Sbjct: 494 ASLKLGKELHCDILKK--GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMP 542


>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Brachypodium distachyon]
          Length = 530

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 240/460 (52%), Gaps = 43/460 (9%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRN----IVAESAMIDGYVKAGRVDEARKV 80
           P   A++  ++ R+H       L    P   R+    +V+ ++++   +++G +  AR +
Sbjct: 85  PYPHAALAHLYSRDHPDAARSLLDETPPAGARSAHSLLVSRNSLLASLLRSGDLPAARAL 144

Query: 81  FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK 140
           FD++   +V SW S+++G  KA ++D    LF +MP +  N  SW  V+ G   +G +A+
Sbjct: 145 FDQMPVRDVVSWNSMVAGLAKAGRLDCAIELFHQMPER--NAASWNAVMCGLIAHGHLAR 202

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                                ARE+F QMP +  V+W  MI+ Y  AG++  A+ LF  M
Sbjct: 203 ---------------------AREWFEQMPVRSNVSWITMISGYAKAGDVQAAASLFERM 241

Query: 201 PQRN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCE--GMLE 255
             +N ++ WNAMI  Y +NG    A+ +   M +     +PNE T +S++++C   G L 
Sbjct: 242 ENQNDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLR 301

Query: 256 -NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
             +   +    LG E +  L    T     +    ++D N+ +L F  L  +DVVS++AM
Sbjct: 302 FGLWVESFMCSLGIELDDHLR---TALVDLYTKSGRID-NAFKL-FRGLRTRDVVSYSAM 356

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I+    +G   +   LF  M  +   P+ +TFVG+LS  +HAGL+E+ R  F  MS  Y 
Sbjct: 357 IVGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGLLSAYNHAGLMEEARACFAFMSSKYN 416

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMAD 432
            +P  EHY+ + D+L R+G++ EA +++ KMP  PH     V GALL ACRLH +V + +
Sbjct: 417 IRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQPHAS---VWGALLLACRLHTNVELGE 473

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            +  +  EL P  SG Y+L  N++A   +WD+   +RK M
Sbjct: 474 MVASKCFELAPGESGYYILLGNIYAQANKWDKVKSLRKTM 513



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 23/263 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A  LFD+M   D VS  SM+    +   L  A  LF  MPE  RN  + +A++ 
Sbjct: 135 SGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDCAIELFHQMPE--RNAASWNAVMC 192

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G +  G +  AR+ F+++   +  SW ++ISGY KA  V     LF+RM  +  ++ +W 
Sbjct: 193 GLIAHGHLARAREWFEQMPVRSNVSWITMISGYAKAGDVQAAASLFERMENQ-NDLYAWN 251

Query: 127 TVVL-----GCAHNGLIAKLEVI--------------SWTTMCTGLERNAMTKLAREYFV 167
            ++      GCA   +   + ++              S  + C+ L           +  
Sbjct: 252 AMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGLWVESFMC 311

Query: 168 QMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +  + D     A++  Y  +G +  A +LF  +  R+V +++AMI     NG    A+ 
Sbjct: 312 SLGIELDDHLRTALVDLYTKSGRIDNAFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIG 371

Query: 227 LLNLMFQSRFMPNETTCTSILTS 249
           L   M  ++ +PN  T   +L++
Sbjct: 372 LFKEMSDAKIVPNAVTFVGLLSA 394



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAM 64
           +G++  A KLF  +   D VS ++MI     N  L +A  LF+ M +++   N V    +
Sbjct: 332 SGRIDNAFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGL 391

Query: 65  IDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +  Y  AG ++EAR  F  +        ++  +T ++    ++ ++DE  +L  +MP++ 
Sbjct: 392 LSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQP 451

Query: 120 KNVVSWTTVVLGC 132
              V W  ++L C
Sbjct: 452 HASV-WGALLLAC 463


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 29/358 (8%)

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           MP K +V+  AMIT Y   G + +A  LF+ + +R+   WN MID YA++G     + L 
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 229 NLMFQSRFMPNETTCTSILTSC--EGMLEN-MLAHAL----AIRLGFEQETSLT---YKC 278
             M  ++  PNE T  ++L++C   G LE     H+      I +     TSL     KC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                         +  ARL FER+  KDVV+W +M++ Y+ HG      RLF  M   G
Sbjct: 121 G------------SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIG 168

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P +ITF+GVL+ CSHAGLV +G K F  M   YG +P+ EHY C+ ++L RAG ++EA
Sbjct: 169 YQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEA 228

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             +V  M   ++D V+ G LLGACRLHG++ + + I E L+    ++SG YVL +N++AA
Sbjct: 229 YELVKNMEI-DQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAA 287

Query: 459 RGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            G W+  A+VR  M E   +K    S IEV  K H  LA     P     Y +L+E++
Sbjct: 288 AGNWEGVARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEIN 345



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 23/203 (11%)

Query: 51  MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110
           MPE  +++V+ +AMI  Y K G +DEAR +FD + E +   W  +I GY +    +EG  
Sbjct: 1   MPE--KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLL 58

Query: 111 LFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
           LF +M L  K   N V+   V+  C   G    LE   W    + +E N +         
Sbjct: 59  LFRQM-LNAKVRPNEVTVLAVLSACGQTG---ALETGRWVH--SYIENNGI--------- 103

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
                ++    ++I  Y   G++  A  +F  +  ++V  WN+M+  YA +G    A++L
Sbjct: 104 ---GINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRL 160

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
              M    + P + T   +L +C
Sbjct: 161 FKEMCMIGYQPTDITFIGVLNAC 183



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 61/298 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPESQR---------- 56
           G + EA  LFD + + D +    MI  + + H LP +   LFR M  ++           
Sbjct: 20  GMIDEARVLFDGLEERDAICWNVMIDGYAQ-HGLPNEGLLLFRQMLNAKVRPNEVTVLAV 78

Query: 57  ---------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N+   +++ID Y K G +++AR VF+ I   +V
Sbjct: 79  LSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDV 138

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIA-------- 139
            +W S++ GY       +  RLF  M +       +++  V+  C+H GL++        
Sbjct: 139 VAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYS 198

Query: 140 -------KLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
                  + +V  +  M   L R    + A E    M  ++D V W  ++ A    GN+A
Sbjct: 199 MKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIA 258

Query: 192 QASELFNLMPQRNV---WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
              ++   +  +N+    T+  + + YA  G      ++  LM +S F   E  C+SI
Sbjct: 259 LGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGF-EKEPGCSSI 315


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 161/523 (30%), Positives = 265/523 (50%), Gaps = 42/523 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +  A ++FD + + D  +   MI  + ++ D  KA  LF  M +   + N ++  +++
Sbjct: 211 GSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSIL 270

Query: 66  DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           DG      +   + V  +        +V   T+LI  Y     ++  RR+FD+M  K+++
Sbjct: 271 DGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKM--KVRD 328

Query: 122 VVSWTTVVLGCAHN-------GLIAKLEV-------ISWTTMCTGLERNAMTKLAREYFV 167
           VVSWT ++ G A N       GL A ++        I++  +      +A   LARE   
Sbjct: 329 VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHS 388

Query: 168 QMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Q+       D++   A++  Y   G +  A ++F+ M +R+V +W+AMI  Y  NG    
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET-SLTYKCTCHY 282
           A +  +LM ++   P+  T  ++L +C         H  A+ LG E  T ++      H 
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNAC--------GHLGALDLGMEIYTQAIKADLVSHI 500

Query: 283 VFWDWGFQLDVNS-----ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
              +    ++V       AR  FE +  +DVV+W  MI  YS HG+  +   LF RMLK 
Sbjct: 501 PVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE 560

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             +P+ +TFVGVLS CS AG VE+GR+ F+ +    G  P  E Y C+ D+L RAG++ E
Sbjct: 561 RFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDE 620

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A  ++++MP  + +  +   LL ACR++G++ +A+   ER +  +P     YV  ++++A
Sbjct: 621 AELLINRMPL-KPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYA 679

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
           A G W+  A+VRK ME R V+K    + IEV+GK HT +   R
Sbjct: 680 AAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDR 722



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 215/482 (44%), Gaps = 69/482 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVA----- 60
           G + EA + FD +     V+  ++I  + +   + +A ALFR M +   + +I+      
Sbjct: 110 GNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVL 169

Query: 61  ------------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                          +A++  YVK G +D AR+VFD +Y+ +V 
Sbjct: 170 DACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           ++  +I GY K+   ++  +LF RM  +    N +S+ +++ GC+    +A  + +    
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQC 289

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           M TGL                   D+    A+I  Y+  G++  A  +F+ M  R+V +W
Sbjct: 290 MNTGLV-----------------DDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSW 332

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
             MI  YA N     A  L   M +    P+  T   I+ +C    +  LA   H+  +R
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            GF   T L       +++   G    +  AR  F+ +  +DVVSW+AMI AY  +G G 
Sbjct: 393 AGF--GTDLLVDTALVHMYAKCG---AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGE 447

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           + F  F  M ++  +PD +T++ +L+ C H G ++ G + +    +A          + L
Sbjct: 448 EAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNAL 506

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQP 443
            ++  + G ++ A  +   M   +RD V    ++G   LHG+ R A  + +R+++   +P
Sbjct: 507 INMNVKHGSIERARYIFENMV--QRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRP 564

Query: 444 SS 445
           +S
Sbjct: 565 NS 566



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 34/374 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q NI   + +I  +   G + EAR+ FD +    V +W ++I+GY +   V E   LF +
Sbjct: 93  QLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQ 152

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN--- 171
           M             V       +I  L V+   +   GL      KL +E+  Q+     
Sbjct: 153 M-------------VDEAMEPSIITFLIVLDACSSPAGL------KLGKEFHAQVIKVGF 193

Query: 172 -KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D     A+++ YV  G+M  A ++F+ + +R+V T+N MI  YA++G    A +L   
Sbjct: 194 VSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYR 253

Query: 231 MFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M Q  F PN  +  SIL  C   E +      HA  +  G   +  +       Y+    
Sbjct: 254 MQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCG- 312

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                +  AR  F++++ +DVVSWT MI  Y+ + +    F LFA M + G +PD IT++
Sbjct: 313 ----SIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYI 368

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +++ C+ +  +   R+  + + RA GF       + L  +  + G +K+A +V   M  
Sbjct: 369 HIINACASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS- 426

Query: 408 HERDHVVLGALLGA 421
             RD V   A++GA
Sbjct: 427 -RRDVVSWSAMIGA 439


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 159/549 (28%), Positives = 259/549 (47%), Gaps = 71/549 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G   +  K+FDEM   + VS   +I+ + +N +L KA  LF  M  S             
Sbjct: 136 GSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLL 195

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     NI  E+A+ + YV+ G ++ A+ VFD +   N  
Sbjct: 196 QSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAV 255

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT-TVVLGCAHNGLIAKLEVISWTTM 149
           +WT L+ GY +A++++    LF RM ++   +  +  ++VL                  +
Sbjct: 256 TWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL-----------------KV 298

Query: 150 CTGLERNAMTKLAREYFVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C GLE   M +    + V++    ++     ++  YV  G++  A   F  + + N  +W
Sbjct: 299 CCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE-NM--LAHALAIR 265
           +A+I  ++++G     +K+   +     + N    TS+  +C      NM   AH  AI+
Sbjct: 359 SALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK 418

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G     S  Y  +     +    +LD   AR AFE ++  D V+WTA+I  Y+ HG+  
Sbjct: 419 RGL---VSYLYGESAMVTMYSKCGRLDY--ARRAFESIDEPDAVAWTAIISGYAYHGNAA 473

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +    F RM   G +P+ +TF+ VL+ CSH+GLV + ++    MSR YG KP  +HY C+
Sbjct: 474 EALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCM 533

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D   RAG ++EA+ ++++M P E D +   +LLG C  H D+++     E L  L P  
Sbjct: 534 IDTYSRAGLLQEALELINRM-PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGD 592

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR 499
           +  Y+L  N+++A G+W+E   VRK M ER +KK  S S I VKG+ H  +      P  
Sbjct: 593 TAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQT 652

Query: 500 EMGYVVLKE 508
           E  Y  L+E
Sbjct: 653 EAIYSKLEE 661



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 166/436 (38%), Gaps = 46/436 (10%)

Query: 8   GKVKEATKLFDEMSQPD----PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--E 61
           GK+KEA     EM   D    P S   +     +   L     +   +  + +N     E
Sbjct: 66  GKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIE 125

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y   G   + +KVFDE+   N+ SW  +IS Y K  ++++  RLF  M      
Sbjct: 126 NCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQAS--- 182

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                    G   N  +     +S    C G     + K    + ++   N +I    A+
Sbjct: 183 ---------GIRPNSAV----YMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAI 229

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
              YV  G +  A  +F+ M  +N  TW  ++  Y +      A++L   M       +E
Sbjct: 230 CNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDE 289

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
              + +L  C G+ +  +    H+  ++LG E E S+       YV        D+ SA 
Sbjct: 290 FVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCG-----DIESAY 344

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
            +F R+   + VSW+A+I  +S  G      ++F  +   G   +   +  V   C+   
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404

Query: 358 LVEKGRKTF------NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            +  G +         L+S  YG       YS       + G++  A R    +   E D
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYS-------KCGRLDYARRAFESID--EPD 455

Query: 412 HVVLGALLGACRLHGD 427
            V   A++     HG+
Sbjct: 456 AVAWTAIISGYAYHGN 471


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 170/594 (28%), Positives = 269/594 (45%), Gaps = 112/594 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G +  A  +FD++   + VS  S+I  F ++  +  A+ +F  MP    +  + ++
Sbjct: 4   YSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSS--SWNS 61

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR-LFDRMPLKLKNV 122
           MI GY ++G +  A  +FD   E NV SW +LI+GY   R + E +  +FD MP + +  
Sbjct: 62  MITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREE-- 119

Query: 123 VSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           VSW  ++   A  G +           + +V++WT +     +N   + A   +  +P +
Sbjct: 120 VSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPER 179

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+VAW A+I AY   G + ++  ++ LMP+RN  +  AMI  Y++NG    A K+L+ + 
Sbjct: 180 DLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLP 239

Query: 233 QSRFMPNETTCTSILTS------------------------CEGMLE-----NMLAHALA 263
                P+++T TS++ +                        C  M+E      ML HA A
Sbjct: 240 D----PDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKA 295

Query: 264 IRLGFEQETSLTYK--------------------------CTCHYVFW-DWGFQLDVNSA 296
           +    +Q+T +++                              H V    +   +D+  A
Sbjct: 296 MFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVAYAHNMDLAEA 355

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHG-------------------------------HGF 325
           R  F  ++ KD V+WTAM+   + HG                               HG 
Sbjct: 356 RRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGM 415

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
              R    M   G KPD ITF+G+L  CSH GLVE+G   F  M   +G  P  EHY  +
Sbjct: 416 AAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRM 475

Query: 386 ADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            D+L RAGQ+  A  ++  MP  P   D    G+LLG+C+ H DV++     E L++   
Sbjct: 476 VDVLGRAGQLGAARELLETMPFIP---DVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDD 532

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            SSG YVL AN++++ G   +   VR +M+ R VKK    S I V G  H  +A
Sbjct: 533 QSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVA 586


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 234/442 (52%), Gaps = 32/442 (7%)

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL----GCAHN 135
           VF ++   N + WT++I GY     + E    + RM       VS+T   L    G A N
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 136 GLIAKLEVISWTTMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMI 181
             + K +V + T +  G        N+M  L         AR+ F +M  +D+V+W  +I
Sbjct: 158 MDLGK-QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
            AY   G+M  AS LF+ +P +++  W AM+  YA+NG    A++    M       +E 
Sbjct: 217 VAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276

Query: 242 TCTSILTSCEGMLENMLAHA-----LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           T   ++++C  +    + HA     +A R GF    ++        ++   G     + A
Sbjct: 277 TLAGVISACAQL--GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCG---SPDEA 331

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FE ++ ++V S+++MIL Y+ HG      +LF  MLK+  +P+++TF+G+LS CSHA
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLVE+GR+ F  M + +G  P  +HY+C+ D+L RAG ++EA+ +V  M P E +  V G
Sbjct: 392 GLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTM-PMEPNGGVWG 450

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           ALLGACR+HG+  +A      L +L+P+  G Y+L +N++A+ G W+E +++RK + E+ 
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510

Query: 476 VKKVASFSQIEVK-GKDHTLLA 496
            KK    S  E K G+ H   A
Sbjct: 511 FKKNPGCSWFEGKNGEIHDFFA 532



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 24/221 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   ++MID YVK G +  ARKVFDE+ E +V SWT LI  Y K   ++    LFD +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKLE-------------VISWTTMCTGLERN 156
             LK++V+WT +V G A NG          K++             VIS       ++  
Sbjct: 237 --LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
              +   E     P+ ++V  +A+I  Y   G+  +A ++F +M +RNV+++++MI  YA
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYA 354

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            +G   +A++L + M ++   PN+ T   IL++C   G++E
Sbjct: 355 MHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 71/290 (24%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A K+FDEMS+ D VS   +I  + +  D+  A  LF  +P   +++VA +AM+ GY + G
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP--LKDMVAWTAMVTGYAQNG 254

Query: 73  RVDEARKVFDEIYE-----------------------------------------GNVYS 91
           R  EA + F ++ +                                         GNV  
Sbjct: 255 RPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVV 314

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----------IAKL 141
            ++LI  Y K    DE  ++F+ M  K +NV S+++++LG A +G           + K 
Sbjct: 315 GSALIDMYSKCGSPDEAYKVFEVM--KERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372

Query: 142 EV----ISWTTMCTGLERNAMTKLAREYFVQM-------PNKDIVAWNAMITAYVDAGNM 190
           E+    +++  + +      + +  R+ F +M       P+ D  A   M+     AG +
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA--CMVDLLGRAGCL 430

Query: 191 AQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            +A +L   MP + N   W A++     +G    A    N +F  +  PN
Sbjct: 431 EEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF--KLEPN 478



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL---DV---NSARL 298
           SIL  C    +    HA  IR G  Q         C YV       L   DV   +   L
Sbjct: 47  SILHDCTLFSQIKQVHAHIIRNGLSQ---------CSYVLTKLIRMLTKVDVPMGSYPLL 97

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++   +   WTAMI  Y+  G   +    + RM + G  P   TF  +   C  A  
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           ++ G++         GF       + + D+  + G +  A +V  +M   ERD V    L
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS--ERDVVSWTEL 215

Query: 419 LGACRLHGDVRMA 431
           + A   +GD+  A
Sbjct: 216 IVAYAKYGDMESA 228


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/489 (32%), Positives = 246/489 (50%), Gaps = 31/489 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G  + A  +F+EM + D  S  SMI+ ++ N     A  L   M     + ++V  + ++
Sbjct: 145 GNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLM 204

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS- 124
           D Y + GR DEA +V  +I + N+ SWT+LIS Y K  + D   R+F  M ++   VVS 
Sbjct: 205 DAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIR--EVVSP 262

Query: 125 ----WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                 +V++ C H G +   + I      T +E N +   +             A  A+
Sbjct: 263 DLDCLCSVLVSCRHIGALRSGKEIHGYG--TKMETNTVFYSS-------------AGAAL 307

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +T Y   G +  A  +F LM + ++ TWNAMI  +        A++    M +     ++
Sbjct: 308 LTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQ 367

Query: 241 TTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           TT ++IL  C+    N + HA  +R      + +T      +++   G    V SA   F
Sbjct: 368 TTISTILPVCDLQYGNPI-HAY-VRKSITLSSVVTVWNAVIHMYCKCGC---VRSAYTIF 422

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
             +  KDVVSW  MI  +  HGHG    +L   M+ SG  P+  TF  VLS CSH+GLV+
Sbjct: 423 CSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVD 482

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G + F  M+  Y   PR EHYSC+ D+L RAGQ  +A+  + KMP  E D  + GALL 
Sbjct: 483 EGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPL-EPDKSIWGALLA 541

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKV 479
           ACR + ++       E+LI ++P  +G YV  +N++A  G WD+  +VRK++E + + K 
Sbjct: 542 ACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKP 601

Query: 480 ASFSQIEVK 488
           +  S IE +
Sbjct: 602 SGQSLIETR 610



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 22/323 (6%)

Query: 149 MCTGLER-NAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           +C+ L+  +A  ++ ++  V    KD      +I  Y D  ++  A  LF+ MPQ NV+ 
Sbjct: 4   LCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYA 63

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           W A+   Y R+G     ++    M  S  +P+      +L +C  +L     +  H   I
Sbjct: 64  WTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVI 123

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             G E    +       YV        +  SARL FE +E +D+ SW +MI  Y ++G  
Sbjct: 124 VCGCESNLQVCNSLIDMYVKCG-----NARSARLVFEEMEERDLFSWNSMISGYVSNGLA 178

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
                L   M   G +PD +T+  ++      G  ++  +    +      +P    ++ 
Sbjct: 179 DLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIE-----QPNIISWTT 233

Query: 385 LADILRRAGQVKEAMRVVSKMPPHE---RDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           L     + G+   ++RV   M   E    D   L ++L +CR  G +R    I     ++
Sbjct: 234 LISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKM 293

Query: 442 QP-----SSSGAYVLSANVHAAR 459
           +      SS+GA +L+      R
Sbjct: 294 ETNTVFYSSAGAALLTMYAKCGR 316


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 234/444 (52%), Gaps = 44/444 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL-- 119
           ++M+  Y + G    ARKVFDEI E ++ SW SL+SGY K     E   +F R+  +   
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF 215

Query: 120 -KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW- 177
             + +S  +V+  C   G +  LE+  W                 E FV      + ++ 
Sbjct: 216 EPDEMSLVSVLGAC---GELGDLELGRWV----------------EGFVVERGMKVNSYI 256

Query: 178 -NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I+ Y   G +  +  +F+ MP R+  TWNA I  YA+NG    A+ L + M ++  
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD---- 292
            PN+ T T++L++C        A   A+ LG + +   T++   H +F      +D    
Sbjct: 317 DPNKVTLTAVLSAC--------ASIGALDLGKQMDEYATHRGLQHDIFVATAL-IDMYAK 367

Query: 293 ---VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFV 347
              + SA+  F  +  K+  SW AMI A ++HG   +   LF RM   G   +P++ITFV
Sbjct: 368 CGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFV 427

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +LS C HAGLV++G + F++MS  +G  P+ EHYSC+ D+L RAG + EA  V+ KM P
Sbjct: 428 SLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM-P 486

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + D+V LGAL  AC+   +V + + + + L+EL PS+SG Y++S+ ++     WD+ A+
Sbjct: 487 EKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAAR 546

Query: 468 VRKKM-ERRVKKVASFSQIEVKGK 490
           +R  M E  V K    S IEV  +
Sbjct: 547 MRALMRENGVTKTPGCSWIEVGNQ 570



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 160/398 (40%), Gaps = 69/398 (17%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T  F C G+   A K+FDE+++ D VS  S+++ + +     +A  +F  + E       
Sbjct: 160 TMYFRC-GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218

Query: 61  ESAMID--------GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E +++         G ++ GR  E   V +   + N Y  ++LIS Y K  ++   RR+F
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGF-VVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLI-----------------AKLEVISWTTMCTGLER 155
           D MP   ++ ++W   +   A NG+                   K+ + +  + C  +  
Sbjct: 278 DGMP--SRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGA 335

Query: 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
             + K   EY        DI    A+I  Y   G++  A  +FN MP++N  +WNAMI  
Sbjct: 336 LDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISA 395

Query: 215 YARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET 272
            A +G    A+ L   M        PN+ T  S+L++C                      
Sbjct: 396 LASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC---------------------- 433

Query: 273 SLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                   H    D G++L D+ S            +  ++ M+   S  GH ++ + + 
Sbjct: 434 -------VHAGLVDEGYRLFDMMSTLFGL----VPKIEHYSCMVDLLSRAGHLYEAWDVI 482

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            +M +   KPD +T   + S C     V+ G +   ++
Sbjct: 483 EKMPE---KPDNVTLGALHSACQRKKNVDIGERVIQML 517


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 150/505 (29%), Positives = 247/505 (48%), Gaps = 34/505 (6%)

Query: 5   GCT--GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP------ESQR 56
           GC+  G   +A +L  +M +      +S I   L      KA    +A+           
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            +V  + ++D Y K   +  ARK+FD +   N  SW+++I GY  +  + E   LFD+M 
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMI 303

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIV 175
           LK  + +  T V LG             S    C  L   +  +    Y +++    DI+
Sbjct: 304 LK--DAMDPTPVTLG-------------SVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL 348

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N +++ Y   G +  A   F+ M  ++  +++A++    +NG    A+ +  +M  S 
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+ TT   +L +C     +     +H   I  GF  +T +     C+ +   +     
Sbjct: 409 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-----CNALIDMYSKCGK 463

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ AR  F R++  D+VSW AMI+ Y  HG G +   LF  +L  G KPD+ITF+ +LS 
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+GLV +GR  F+ MSR +   PR EH  C+ DIL RAG + EA   +  M P E D 
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM-PFEPDV 582

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KK 471
            +  ALL ACR+H ++ + + + +++  L P S+G +VL +N+++A G WD+ A +R  +
Sbjct: 583 RIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQ 642

Query: 472 MERRVKKVASFSQIEVKGKDHTLLA 496
            +  +KK+   S IE+ G  H  + 
Sbjct: 643 KDWGLKKIPGCSWIEINGIVHAFVG 667



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 183/452 (40%), Gaps = 50/452 (11%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------PESQR 56
           +V  A +LFDE+  P  +    +I  +  N     A  L+ +M            P   +
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
                 A+ DG      +    K+F    E +V+  T+L+  Y K   + E +RLF  M 
Sbjct: 118 ACSGLLAIEDGV----EIHSHAKMFG--LESDVFVCTALVDFYAKCGILVEAQRLFSSM- 170

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT----------------- 159
              ++VV+W  ++ GC+  GL      +       G+  N+ T                 
Sbjct: 171 -SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 160 KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K    Y V+   +  +V    ++  Y     +  A ++F++M  RN  +W+AMI  Y  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 219 GPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSL 274
                A++L + M     M P   T  S+L +C  + +       H   I+LG   +  L
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
               T   ++   G    ++ A   F+ +  KD VS++A++     +G+      +F  M
Sbjct: 350 GN--TLLSMYAKCGV---IDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
             SG  PD  T +GVL  CSH   ++ G  +   +    GF       + L D+  + G+
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNALIDMYSKCGK 463

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  A  V ++M  H  D V   A++    +HG
Sbjct: 464 ISFAREVFNRMDRH--DIVSWNAMIIGYGIHG 493



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 154/381 (40%), Gaps = 53/381 (13%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVS 124
           Y+   +V  AR++FDEI   +V  W  +I  Y      D    L+  M L L    N  +
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSM-LHLGVRPNKYT 111

Query: 125 WTTVVLGCAHNGLIA---KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           +  V+  C+  GL+A    +E+ S   M  GLE                  D+    A++
Sbjct: 112 YPFVLKACS--GLLAIEDGVEIHSHAKM-FGLE-----------------SDVFVCTALV 151

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G + +A  LF+ M  R+V  WNAMI   +  G    A++L+  M +    PN +
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS 211

Query: 242 TCTSILTS---CEGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQL 291
           T   +L +    + +      H   +R  F+           +  KC C           
Sbjct: 212 TIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC----------- 260

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVL 350
            +  AR  F+ +  ++ VSW+AMI  Y       +   LF +M LK    P  +T   VL
Sbjct: 261 -LLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             C+    + +GRK    + +  G        + L  +  + G + +A+R    M P  +
Sbjct: 320 RACAKLTDLSRGRKLHCYIIK-LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNP--K 376

Query: 411 DHVVLGALLGACRLHGDVRMA 431
           D V   A++  C  +G+  +A
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVA 397



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           K+ + +     N D    + +   Y+    +  A  LF+ +P  +V  WN +I  YA NG
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTY 276
           P   A+ L + M      PN+ T   +L +C G+L   + +  H+ A   G E +    +
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD---VF 145

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
            CT    F+     L V + RL F  +  +DVV+W AMI   S +G      +L  +M +
Sbjct: 146 VCTALVDFYAKCGIL-VEAQRL-FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGR 363
            G  P+  T VGVL     A  +  G+
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGK 230


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 150/505 (29%), Positives = 248/505 (49%), Gaps = 34/505 (6%)

Query: 5   GCT--GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP------ESQR 56
           GC+  G   +A +L  +M +      +S I   L      KA    +A+           
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN 243

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            +V  + ++D Y K   +  ARK+FD +   N  SW+++I GY  +  + E   LFD+M 
Sbjct: 244 GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMI 303

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIV 175
           LK  + +  T V LG             S    C  L   +  +    Y +++ +  DI+
Sbjct: 304 LK--DAMDPTPVTLG-------------SVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL 348

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N +++ Y   G +  A   F+ M  ++  +++A++    +NG    A+ +  +M  S 
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+ TT   +L +C     +     +H   I  GF  +T +     C+ +   +     
Sbjct: 409 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-----CNALIDMYSKCGK 463

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ AR  F R++  D+VSW AMI+ Y  HG G +   LF  +L  G KPD+ITF+ +LS 
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+GLV +GR  F+ MSR +   PR EH  C+ DIL RAG + EA   +  M P E D 
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM-PFEPDV 582

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KK 471
            +  ALL ACR+H ++ + + + +++  L P S+G +VL +N+++A G WD+ A +R  +
Sbjct: 583 RIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQ 642

Query: 472 MERRVKKVASFSQIEVKGKDHTLLA 496
            +  +KK+   S IE+ G  H  + 
Sbjct: 643 KDWGLKKIPGCSWIEINGIVHAFVG 667



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 183/456 (40%), Gaps = 58/456 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------PESQR 56
           +V  A +LFDE+  P  +    +I  +  N     A  L+ +M            P   +
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
                 A+ DG      +    K+F    E +V+  T+L+  Y K   + E +RLF  M 
Sbjct: 118 ACSGLLAIEDGV----EIHSHAKMFG--LESDVFVCTALVDFYAKCGILVEAQRLFSSM- 170

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT----------------- 159
              ++VV+W  ++ GC+  GL      +       G+  N+ T                 
Sbjct: 171 -SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 160 KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K    Y V+   +  +V    ++  Y     +  A ++F++M  RN  +W+AMI  Y  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 219 GPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSL 274
                A++L + M     M P   T  S+L +C  + +       H   I+LG   +  L
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILL 349

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
               T   ++   G    ++ A   F+ +  KD VS++A++     +G+      +F  M
Sbjct: 350 GN--TLLSMYAKCGV---IDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY----GFKPRAEHYSCLADILR 390
             SG  PD  T +GVL  CSH   ++ G       S  Y    GF       + L D+  
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHG-----FCSHGYLIVRGFATDTLICNALIDMYS 459

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + G++  A  V ++M  H  D V   A++    +HG
Sbjct: 460 KCGKISFAREVFNRMDRH--DIVSWNAMIIGYGIHG 493



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 155/381 (40%), Gaps = 53/381 (13%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVS 124
           Y+   +V  AR++FDEI   +V  W  +I  Y      D    L+  M L L    N  +
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSM-LHLGVRPNKYT 111

Query: 125 WTTVVLGCAHNGLIA---KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           +  V+  C+  GL+A    +E+ S   M  GLE                  D+    A++
Sbjct: 112 YPFVLKACS--GLLAIEDGVEIHSHAKM-FGLE-----------------SDVFVCTALV 151

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G + +A  LF+ M  R+V  WNAMI   +  G    A++L+  M +    PN +
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS 211

Query: 242 TCTSILTS---CEGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQL 291
           T   +L +    + +      H   +R  F+           +  KC C           
Sbjct: 212 TIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC----------- 260

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVL 350
            +  AR  F+ +  ++ VSW+AMI  Y       +   LF +M LK    P  +T   VL
Sbjct: 261 -LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             C+    + +GRK    + +  G        + L  +  + G + +A+R   +M P  +
Sbjct: 320 RACAKLTDLSRGRKLHCYIIK-LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNP--K 376

Query: 411 DHVVLGALLGACRLHGDVRMA 431
           D V   A++  C  +G+  +A
Sbjct: 377 DSVSFSAIVSGCVQNGNAAVA 397



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 8/207 (3%)

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           K+ + +     N D    + +   Y+    +  A  LF+ +P  +V  WN +I  YA NG
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTY 276
           P   A+ L + M      PN+ T   +L +C G+L   + +  H+ A   G E +    +
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD---VF 145

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
            CT    F+     L V + RL F  +  +DVV+W AMI   S +G      +L  +M +
Sbjct: 146 VCTALVDFYAKCGIL-VEAQRL-FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGR 363
            G  P+  T VGVL     A  +  G+
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGK 230


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/515 (29%), Positives = 256/515 (49%), Gaps = 37/515 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-----EALFRAMPESQRNIVAES 62
           G+V  A ++F E+ + D +S  SM++ +++N    +A     E L          IV+ S
Sbjct: 314 GRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLS 373

Query: 63  AMID--GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           + +   G++  G+   A  +   + + +     +L+  Y K R ++    +FDRM  ++K
Sbjct: 374 SAVGHLGWLLNGKEVHAYAIKQRL-DSDTQVGNTLMDMYMKCRYIEYSAHVFDRM--RIK 430

Query: 121 NVVSWTTVVLGCAHNGL-IAKLEVI----------------SWTTMCTGLERNAMTKLAR 163
           + +SWTT++   A +   I  LE+                 S    C+GLE   + K   
Sbjct: 431 DHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLH 490

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            Y ++    D+V  N +I  Y + G +  + ++F  + Q+++ TW +MI+ YA +G    
Sbjct: 491 CYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNE 550

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTC 280
           A+ L   M  +   P+     SIL +  G+    +    H   IR  F  E ++      
Sbjct: 551 ALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVD 610

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y          ++ A   F  ++ KD+V WTAMI A   HGHG Q   LF RML++G  
Sbjct: 611 MYSGCG-----SLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVT 665

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD ++F+ +L  CSH+ LV +G+   ++M   Y  +P  EHY+C+ D+L R+GQ +EA  
Sbjct: 666 PDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYE 725

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            +  MP   +  VV  +LLGACR+H +  +A     RL+EL+P + G YVL +NV A  G
Sbjct: 726 FIKSMPLKPKS-VVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMG 784

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           +W+   +VR ++ ER ++K  + S IE+    HT 
Sbjct: 785 KWNNAKEVRARISERGLRKDPACSWIEIGNNVHTF 819



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 47/386 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA-ES 62
           +G  G+V +A  LFD MS     S  ++I  +L +    +A  ++RAM  S  + VA + 
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164

Query: 63  AMIDGYVKAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             +   +KA  V+   +   E++        + + +   +LI+ Y K   +D   R+F+ 
Sbjct: 165 CTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFEL 224

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLI------------AKLEVISWTTM-----CTGLERNA 157
           M    ++V SW +++ GC  NG+             A L + S+TT+     CT L +  
Sbjct: 225 MH-DGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLN 283

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           + +      ++  ++  +  NA++  Y   G +  A  +F  + +++  +WN+M+  Y +
Sbjct: 284 LGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQ 343

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML----AHALAIRLGFEQETS 273
           NG    A++ ++ M +  F P+   C   L+S  G L  +L     HA AI+   + +T 
Sbjct: 344 NGLYAEAIEFISEMLRGGFQPDH-ACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQ 402

Query: 274 -----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                +     C Y+ +         SA + F+R+  KD +SWT +I  Y+      +  
Sbjct: 403 VGNTLMDMYMKCRYIEY---------SAHV-FDRMRIKDHISWTTIITCYAQSSRHIEAL 452

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCS 354
            +F    K G K D +    +L  CS
Sbjct: 453 EIFREAQKEGIKVDPMMIGSILEACS 478



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM---KLLNLMFQSRF 236
           ++  Y   G +A A  LF+ M  R V++WNA+I  Y  +G    A+   + + L   S  
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160

Query: 237 MPNETTCTSILTS----------CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            P+  T  S+L +          CE        H LA++ G ++ T +       Y    
Sbjct: 161 APDGCTLASVLKASGVEGDGRCGCE-------VHGLAVKHGLDRSTFVANALIAMYA--K 211

Query: 287 WGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
            G    ++SA   FE + + +DV SW +MI     +G   Q   LF  M ++    +  T
Sbjct: 212 CGI---LDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYT 268

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            VGVL  C+    +  GR+    + ++ G +   +  + L  +  + G+V  A+RV  ++
Sbjct: 269 TVGVLQVCTELAQLNLGRELHAALLKS-GSEVNIQCNALLV-MYTKCGRVDSALRVFREI 326

Query: 406 PPHERDHVVLGALL 419
              E+D++   ++L
Sbjct: 327 D--EKDYISWNSML 338


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 256/531 (48%), Gaps = 66/531 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G+++EA  +FD + +    S  +MI  ++ +     A  LFR M      P +       
Sbjct: 77  GRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIIL 136

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + ++   +A++  Y K G ++EAR++FD +   ++ 
Sbjct: 137 KACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDII 196

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT +I  Y ++    E  RL  +M  +    N +++ +++  CA  G +  ++ +    
Sbjct: 197 SWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHA 256

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +  GLE                  D+    A++  Y  +G++  A  +F+ M  R+V +W
Sbjct: 257 LDAGLEL-----------------DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSW 299

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIR 265
           N MI  +A +G    A  L   M      P+     SIL +C   G LE +   H  A+ 
Sbjct: 300 NVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALD 359

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G E +  +       +++   G    ++ AR+ F+R++ ++VVSW AMI   + HG G 
Sbjct: 360 SGLEVDVRVGTALV--HMYSKSG---SIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQ 414

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               +F RM   G KPD +TFV VLS CSHAGLV++GR  +  M++ YG +P   H +C+
Sbjct: 415 DALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCM 474

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ EA   +  M   + D    GALLG+CR +G+V + + + +  ++L P +
Sbjct: 475 VDLLGRAGRLMEAKLFIDNMAV-DPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKN 533

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           +  YVL +N++A  G+WD  + VR  M ER ++K    S IEV  K H  L
Sbjct: 534 AATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFL 584



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 189/398 (47%), Gaps = 32/398 (8%)

Query: 36  LRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
           L+  DL  A+ +   + +S  ++N    + ++  Y++ GR+ EAR VFD + + +  SW 
Sbjct: 39  LKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWN 98

Query: 94  SLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           ++I+GY + +  ++  RLF  M  +    N  ++  ++  CA       L  + W     
Sbjct: 99  AMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACA------SLSALKW----- 147

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G E +A  +            D+    A++  Y   G++ +A  +F+ +   ++ +W  M
Sbjct: 148 GKEVHACIRHGG------LESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVM 201

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENM-LAHALAIRLGF 268
           I  YA++G    A +L+  M Q  F PN  T  SIL +C  EG L+ +   H  A+  G 
Sbjct: 202 IGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGL 261

Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           E +  +       Y          ++ AR+ F+R++ +DVVSW  MI A++ HG G + +
Sbjct: 262 ELDVRVGTALVQMY-----AKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAY 316

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF +M   G KPD I F+ +L+ C+ AG +E  +K  +  +   G +      + L  +
Sbjct: 317 DLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK-IHRHALDSGLEVDVRVGTALVHM 375

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             ++G + +A  V  +M    R+ V   A++     HG
Sbjct: 376 YSKSGSIDDARVVFDRMKV--RNVVSWNAMISGLAQHG 411


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/416 (32%), Positives = 214/416 (51%), Gaps = 33/416 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+ID Y K G   +A KVF+E+   +V SW S ++   +  +V+  RR+FD M  K   
Sbjct: 158 NALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEK--- 214

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               + +SW T+  G  +    + A + F  MP +++V+W+ ++
Sbjct: 215 --------------------DTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVV 254

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y   G+M  A  +F+ MP +N+ TW  M+   A+NG    A KL   M ++    +  
Sbjct: 255 SGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVA 314

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAF 300
              SIL +C       L   +   +   Q    T+ C     +F   G    +N A   F
Sbjct: 315 AVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGC---INRADYVF 371

Query: 301 E-RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           +  +  KD VSW  +I  ++ HGHG +    FA+M   G  PD +T + VLS C+H G V
Sbjct: 372 DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFV 431

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGA 417
           E+GR+ F  M R YG  P+ EHY C+ D+L R G +KEA+ ++  MP  P+E   V+ G+
Sbjct: 432 EEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNE---VIWGS 488

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           LL ACRLH +V  A+     L +LQPS++G Y + ++++A  G+W + A+ R +M+
Sbjct: 489 LLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMK 544



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 135/266 (50%), Gaps = 23/266 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G   +A+K+F+EM + D VS  S +   +R  ++  A  +F  M E  ++ V+ + ++D
Sbjct: 167 NGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLE--KDTVSWNTLLD 224

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY KAG V+EA K+F  + E NV SW++++SGY K   ++  R +FD+MP   KN+V+WT
Sbjct: 225 GYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMP--TKNLVTWT 282

Query: 127 TVVLGCAHNGLI------------AKLE-----VISWTTMCTGLERNAMTKLAREYF-VQ 168
            +V  CA NGL+            A +E     V+S    C      A+ K    Y   +
Sbjct: 283 IMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTR 342

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKL 227
              +     NA+I  +   G + +A  +F+  + +++  +WN +I  +A +G    A+  
Sbjct: 343 QLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDF 402

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGM 253
              M    F P+  T  ++L++C  M
Sbjct: 403 FAQMKLQGFCPDAVTMINVLSACTHM 428


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/502 (30%), Positives = 258/502 (51%), Gaps = 44/502 (8%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           +C+S++ +F       +A          Q +I   SA+I  Y   G++++ARKVFDEI +
Sbjct: 85  ACSSLLDIFSGKQTHQQAFVF-----GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPK 139

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            N+ SWTS+I GY       +   LF  + ++ +N    T           +  + ++S 
Sbjct: 140 RNIVSWTSMIRGYDLNGNALDAVSLFKDLLIE-ENDDDATM---------FLDSMGMVSV 189

Query: 147 TTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDA--GNMAQASELFNLMPQR 203
            + C+ +    +T+    + ++   ++ +   N ++ AY     G +A A ++F+ +  +
Sbjct: 190 ISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK 249

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP-NETTCTSIL--TSCEGMLE-NMLA 259
           +  ++N+++  YA++G    A  +   + + + +  N  T +++L   S  G L      
Sbjct: 250 DRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCI 309

Query: 260 HALAIRLGFEQE-----TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
           H   IR+G E +     + +   C C            V +ARLAF+R++ K+V SWTAM
Sbjct: 310 HDQVIRMGLEDDVIVGTSIIDMYCKCGR----------VETARLAFDRMKNKNVRSWTAM 359

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  Y  HGH  +   LF  M+ SG +P+ ITFV VL+ CSHAGL + G   FN M   +G
Sbjct: 360 IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFG 419

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
            +P  EHY C+ D+L RAG +++A  ++ KM   E D ++  +LL ACR+H +V +A+  
Sbjct: 420 VEPGLEHYGCMVDLLGRAGFLQKAYDLIQKM-KMEPDSIIWSSLLAACRIHKNVELAEIS 478

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHT 493
             RL EL PS+ G Y+L ++++A  G W +  +VR  M+ R + K   FS +E+ G+ H 
Sbjct: 479 VARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHV 538

Query: 494 LLA-----PMREMGYVVLKEVD 510
            L      P RE  Y  L E++
Sbjct: 539 FLIGDEEHPQREKIYEFLAELN 560



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 67/296 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF--------------- 48
           +   GK+++A K+FDE+ + + VS  SMI  +  N +   A +LF               
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMF 180

Query: 49  ------------------RAMPES----------QRNIVAESAMIDGYVKAGR--VDEAR 78
                             + + ES           R +   + ++D Y K G   V  AR
Sbjct: 181 LDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAH 134
           K+FD+I + +  S+ S++S Y ++   +E   +F R+ +K K    N ++ +TV+L  +H
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRL-IKEKVVTFNCITLSTVLLAVSH 299

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           +G +   + I    +  GLE                  D++   ++I  Y   G +  A 
Sbjct: 300 SGALRIGKCIHDQVIRMGLE-----------------DDVIVGTSIIDMYCKCGRVETAR 342

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             F+ M  +NV +W AMI  Y  +G    A++L   M  S   PN  T  S+L +C
Sbjct: 343 LAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 147/330 (44%), Gaps = 33/330 (10%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +V+SW S+I+   ++    E  R F  M    K  +  T     CA     + L++ S  
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMR---KLSLYPTRSSFPCAIKACSSLLDIFSGK 96

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                       +  ++ FV     DI   +A+I  Y   G +  A ++F+ +P+RN+ +
Sbjct: 97  ------------QTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144

Query: 208 WNAMIDRYARNGPEGAAMKLL-NLMFQ-----SRFMPNETTCTSILTSC-----EGMLEN 256
           W +MI  Y  NG    A+ L  +L+ +     +    +     S++++C     +G+ E+
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTES 204

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           +  H+  I+ GF++  S+       Y     G +  V  AR  F+++  KD VS+ +++ 
Sbjct: 205 I--HSFVIKRGFDRGVSVGNTLLDAYA---KGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            Y+  G   + F +F R++K      + IT   VL   SH+G +  G+   + + R  G 
Sbjct: 260 VYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR-MGL 318

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +      + + D+  + G+V+ A     +M
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARLAFDRM 348


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/506 (30%), Positives = 265/506 (52%), Gaps = 42/506 (8%)

Query: 3   QFGCTGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI 58
           QFG  G   EA  LF +M     +PD  + + +I+       L   + L          +
Sbjct: 248 QFGYAG---EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL 304

Query: 59  --VAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE-GRRLF 112
                  +I+ Y K    G +  ARK+FD+I + NV+SWT++I+GY +    DE    LF
Sbjct: 305 DRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLF 364

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
             M L   + N  ++++ +  CA+   +A L +               T   +  F  + 
Sbjct: 365 RGMILTHVIPNHFTFSSTLKACAN---LAALRI----------GEQVFTHAVKLGFSSV- 410

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             + VA N++I+ Y  +G +  A + F+++ ++N+ ++N +ID YA+N     A++L N 
Sbjct: 411 --NCVA-NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467

Query: 231 MFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           +       +  T  S+L+   S   + +    HA  I+ G +   S+     C+ +   +
Sbjct: 468 IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV-----CNALISMY 522

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++ SA   FE +E ++V+SWT++I  ++ HG   Q   LF +ML+ G +P+E+T++
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYI 582

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VLS CSH GLV +G K F  M   +G  PR EHY+C+ DIL R+G + EA++ ++ M P
Sbjct: 583 AVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSM-P 641

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
           ++ D +V    LGACR+HG++ +  +  + +IE +P    AY+L +N++A+  +WDE + 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSN 701

Query: 468 VRKKM-ERRVKKVASFSQIEVKGKDH 492
           +RK M E+ + K A  S +EV+ K H
Sbjct: 702 IRKAMKEKXLIKEAGCSWVEVENKVH 727



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 178/414 (42%), Gaps = 36/414 (8%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMIDGYVKAGRV 74
           F   + P+P++    +   + N  L KA +    M    S  ++   S  +   ++    
Sbjct: 25  FPTFTNPNPLT--GRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 75  DEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
           D    V +++ + ++     +  SLIS Y K  Q ++   +F R+    ++++SW+ +V 
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVS 141

Query: 131 GCAHN-----GLIAKLEVI------------SWTTMCTGLERNAMTKLAREYFVQMP--N 171
             A+N      L+  +++I            + T  C+  E  ++      + ++     
Sbjct: 142 CFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQ 201

Query: 172 KDIVAWNAMITAYVDA-GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            D+     +I  +V   G++  A ++F  MP+RN  TW  MI R  + G  G A+ L   
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLD 261

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M  S + P+  T + ++++C  M   +L    H+ AIR G   +  +   C    ++   
Sbjct: 262 MIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV--GCCLINMYAKC 319

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAY-SNHGHGFQVFRLFARMLKSGTKPDEITF 346
                + +AR  F+++   +V SWTAMI  Y    G+  +   LF  M+ +   P+  TF
Sbjct: 320 SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTF 379

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
              L  C++   +  G + F    +  GF       + L  +  R+G++ +A +
Sbjct: 380 SSTLKACANLAALRIGEQVFTHAVK-LGFSSVNCVANSLISMYARSGRIDDARK 432



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
           ++D++SW+AM+  ++N+  GF+    F  M+++G  P+E  F      CS A  V  G  
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 365 TFNLMSRAYGFKPRAEHYSC-LADILRRA-GQVKEAMRVVSKMPPHERDHV 413
            F  + +  G+        C L D+  +  G +  A +V  KMP  ER+ V
Sbjct: 190 IFGFVIKT-GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP--ERNAV 237



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 101/246 (41%), Gaps = 59/246 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +  +G++ +A K FD + + + +S  ++I  + +N +  +A  LF  + +        
Sbjct: 419 SMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAF 478

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         + N    +A+I  Y + G ++ A +VF+++
Sbjct: 479 TFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH-------- 134
            + NV SWTS+I+G+ K     +   LF +M  +    N V++  V+  C+H        
Sbjct: 539 EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGW 598

Query: 135 ---------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAY 184
                    +G+I ++E   +  +   L R+     A ++   MP K D + W   + A 
Sbjct: 599 KHFKSMYTEHGVIPRME--HYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 185 VDAGNM 190
              GN+
Sbjct: 657 RVHGNL 662


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 170/567 (29%), Positives = 265/567 (46%), Gaps = 85/567 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAM----- 51
           S +  +G+ +EA+K F EM      +P+ VS  ++I    +N    +A ++FR M     
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 52  -PESQRNIVAESAMID-GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
            P S     A SA  +   ++ GR      +  E  + ++    SL+  Y K R V+  R
Sbjct: 359 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 418

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL-------EVISWTTMCTGLER 155
           R F    +K  ++VSW  ++ G A  G       L++++       ++I+W  + TG  +
Sbjct: 419 RKFGM--IKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 156 NAMTKLAREYFVQM------PNKDIVAW-------------------------------- 177
               K A E+F +M      PN   ++                                 
Sbjct: 477 YGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV 536

Query: 178 -NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I+ Y    ++  A  +F+ +  R+V  WN++I   A++G    A+ LL  M  S  
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD----WGF 289
             N  T  S L +C     + +    H   IR G +         TC+++       +G 
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD---------TCNFILNSLIDMYGR 647

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  +R  F+ +  +D+VSW  MI  Y  HG G     LF      G KP+ ITF  +
Sbjct: 648 CGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNL 707

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSH+GL+E+G K F +M   Y   P  E Y+C+ D+L RAGQ  E +  + KM P E
Sbjct: 708 LSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-PFE 766

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            +  V G+LLGACR+H +  +A+Y    L EL+P SSG YVL AN+++A G W++ A++R
Sbjct: 767 PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIR 826

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLL 495
             M ER V K    S IEVK K H+ +
Sbjct: 827 CLMKERGVTKPPGCSWIEVKRKLHSFV 853



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 176/412 (42%), Gaps = 57/412 (13%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG V++A ++FD+MS+ +  S  +++ ++    D  +   LF  M       V E    D
Sbjct: 137 TGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-------VNEGVRPD 189

Query: 67  GYV-----------KAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRL 111
            +V           K  RV   + V+D +    +EGN     S++  + K  ++D  RR 
Sbjct: 190 HFVFPKVFKACSELKNYRV--GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 247

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           F+   ++ K+V  W  +V G    G   K L+ IS   + +G++                
Sbjct: 248 FEE--IEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL-SGVK---------------- 288

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAAM 225
             D V WNA+I+ Y  +G   +AS+ F  M      + NV +W A+I    +NG +  A+
Sbjct: 289 -PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEAL 347

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            +   M      PN  T  S +++C  +  ++L H   I     +   L           
Sbjct: 348 SVFRKMVLEGVKPNSITIASAVSACTNL--SLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 286 DWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
           D+  +   V  AR  F  ++  D+VSW AM+  Y+  G   +   L + M   G +PD I
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           T+ G+++  +  G  +   + F  M  + G  P     + ++  L   GQV+
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNT---TTISGALAACGQVR 513



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A  +F+ M +RNV++W A+++ Y   G     +KL  LM      P+
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
                 +  +C  +    +    +   + +GFE  + +  K +   +F   G ++D+  A
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCV--KGSILDMFIKCG-RMDI--A 244

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  FE +E KDV  W  M+  Y++ G   +  +  + M  SG KPD++T+  ++S  + +
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQS 304

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           G  E+  K F  M     FKP    ++ L     + G   EA+ V  KM
Sbjct: 305 GQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 161/535 (30%), Positives = 268/535 (50%), Gaps = 43/535 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V++A  LFD+      V+  SMI+ +  N    +A  +F +M  +   + +ES+    
Sbjct: 247 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRL-SESSFASI 305

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSW---------TSLISGYFKARQVDEGRRLFDRMPLK 118
                 + E R  F E    +V  +         T+L+  Y K   + +  RLF      
Sbjct: 306 IKLCANLKELR--FTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGF- 362

Query: 119 LKNVVSWTTVVLGCAHN-------GLIAKLE-------VISWTTMCTGLERNAMTKLARE 164
           L NVVSWT ++ G   N       GL ++++         +++ + T L   + +++  +
Sbjct: 363 LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 422

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
                  +      A++ AYV  G + +A+++F+ +  +++  W+AM+  YA+ G   AA
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTC 280
           +K+ + + +    PNE T +SIL  C     +M      H  AI+   +  +SL   C  
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLD--SSL---CVS 537

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
             +   +  +  + SA   F+R   KD+VSW +MI  Y+ HG   +   +F  M K   K
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 597

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
            D +TF+GV + C+HAGLVE+G K F++M R     P  EH SC+ D+  RAGQ+++AM+
Sbjct: 598 MDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 657

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           V+  M P+     +   +L ACR+H    +     E++I + P  S AYVL +N++A  G
Sbjct: 658 VIDNM-PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESG 716

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           +W E A+VRK M ER VKK   +S IEVK K +  LA     P+++  Y+ L+++
Sbjct: 717 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDL 771



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 211/499 (42%), Gaps = 73/499 (14%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A  LFD+    D  S  S++  F R+    +A  LF        NI      +D  + + 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFL-------NIQHLGMEMDCSIFSS 102

Query: 73  RVDEARKVFDEIYE-------------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            +  +  + DE++               +V   TSL+  Y K     +GR +FD M  K 
Sbjct: 103 VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEM--KE 160

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT------KLARE--------- 164
           +NVV+WTT++ G A N L  ++  +       G + N+ T       LA E         
Sbjct: 161 RNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQV 220

Query: 165 YFVQMPN---KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           + V + N   K I   N++I  Y+  GN+ +A  LF+    ++V TWN+MI  YA NG +
Sbjct: 221 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 280

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKC 278
             A+ +   M  +    +E++  SI+  C  + E       H   ++ GF  + ++    
Sbjct: 281 LEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR--- 337

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
           T   V +     + +++ RL  E     +VVSWTAMI  +  +    +   LF+ M + G
Sbjct: 338 TALMVAYSKCMAM-LDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKG 396

Query: 339 TKPDEITFVGVLSDCS-------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +P+E T+  +L+          HA +V    KT    S   G        + L D   +
Sbjct: 397 VRPNEFTYSVILTALPVISPSEVHAQVV----KTNYERSSTVG--------TALLDAYVK 444

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS---S 446
            G+V EA +V S +    +D V   A+L      G+   A  I   L +  ++P+    S
Sbjct: 445 LGKVDEAAKVFSGID--NKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFS 502

Query: 447 GAYVLSANVHAARGEWDEF 465
               + A   A+ G+  +F
Sbjct: 503 SILNVCAATTASMGQGKQF 521



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 123/298 (41%), Gaps = 35/298 (11%)

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           G   + R+  A  +FD+  + +  S+TSL+ G+ +  +  E  RLF              
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLF-------------- 85

Query: 127 TVVLGCAHNGLIAKLEVISWT-----TMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAM 180
              L   H G+     + S       T+C  L  R    +  +  F+     D+    ++
Sbjct: 86  ---LNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLD----DVSVGTSL 138

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y+   N      +F+ M +RNV TW  +I  YARN      + L   M      PN 
Sbjct: 139 VDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNS 198

Query: 241 TTCTSIL--TSCEGM-LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  + L   + EG+    +  H + ++ G ++   ++      Y+        +V  AR
Sbjct: 199 FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG-----NVRKAR 253

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           + F++ E K VV+W +MI  Y+ +G   +   +F  M  +  +  E +F  ++  C++
Sbjct: 254 ILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 233/461 (50%), Gaps = 30/461 (6%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++ ++  Y   GR+ EAR +FD+++  +V +W+ +I GY ++   ++   LF+ M  K  
Sbjct: 160 QTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEM--KNY 217

Query: 121 NV----VSWTTVVLGCAHNGLIAKLEVIS--------------WTTMCTGLERNAMTKLA 162
           NV    +  +TV+  C   G ++  ++I                + + T         LA
Sbjct: 218 NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLA 277

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
              F +M  K++VA  AM+T Y   G +  A  +FN M ++++  W+AMI  YA +    
Sbjct: 278 LNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQ 337

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENM-LAHALAIRLGFEQETSLTYKCT 279
            A+ L N M      P++ T  S++T+C   G L+     H    + GF     +     
Sbjct: 338 EALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALI 397

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          +  AR  F+++  K+V+SWT MI A++ HG      R F +M     
Sbjct: 398 EMYAKCG-----SLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENI 452

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P+ ITFVGVL  CSHAGLVE+GRK F  M   +   P+  HY C+ D+  RA  ++EA+
Sbjct: 453 EPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREAL 512

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            +V  MP    + ++ G+L+ ACR+HG++ + ++  +RL+EL P   GA+V  +N++A  
Sbjct: 513 ELVEAMPL-APNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKA 571

Query: 460 GEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
             W++  QVRK M+ + + K    S+ E+  + H  L   R
Sbjct: 572 RRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADR 612



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 41/311 (13%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP   ++++T++     +  A  LF  M  + +N+VA +AM+ GY K G+++ AR VF++
Sbjct: 257 DPHLQSALVTMYASCGSMDLALNLFEKM--TPKNLVASTAMVTGYSKLGQIENARSVFNQ 314

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKL 141
           + + ++  W+++ISGY ++    E   LF+ M  L +K + V+  +V+  CAH G    L
Sbjct: 315 MVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLG---AL 371

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +   W  +   +++N            +P       NA+I  Y   G++ +A  +F+ MP
Sbjct: 372 DQAKWIHLF--VDKNGFGG-------ALPIN-----NALIEMYAKCGSLERARRIFDKMP 417

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA 259
           ++NV +W  MI  +A +G  G+A++  + M      PN  T   +L +C   G++E    
Sbjct: 418 RKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEE--- 474

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLE----AKDVVSW 311
               I      E ++T K   HY     G  +D+    N  R A E +E    A +V+ W
Sbjct: 475 -GRKIFYSMINEHNITPK-HVHY-----GCMVDLFGRANLLREALELVEAMPLAPNVIIW 527

Query: 312 TAMILAYSNHG 322
            +++ A   HG
Sbjct: 528 GSLMAACRVHG 538



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 32/286 (11%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D      ++  Y   G +A+A  +F+ M  R+V TW+ MID Y ++G    A+ L   
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213

Query: 231 MFQSRFMPNETTCTSILTSC-------------EGMLEN--------------MLAHALA 263
           M      P+E   +++L++C             + ++EN              M A   +
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQL--DVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           + L       +T K          G+     + +AR  F ++  KD+V W+AMI  Y+  
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
               +   LF  M   G KPD++T + V++ C+H G +++  K  +L     GF      
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPI 392

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            + L ++  + G ++ A R+  KMP   ++ +    ++ A  +HGD
Sbjct: 393 NNALIEMYAKCGSLERARRIFDKMP--RKNVISWTCMISAFAMHGD 436



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQ----S 234
           +I++   + ++  A  +FNL+P+      N  +   +R+  PE   +    +  Q     
Sbjct: 62  VISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVD 121

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           RF  +       L+  + ++E +  H LA +LGF+ +  +       Y          + 
Sbjct: 122 RF--SFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACG-----RIA 174

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            ARL F+++  +DVV+W+ MI  Y   G       LF  M     +PDE+    VLS C 
Sbjct: 175 EARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACG 234

Query: 355 HAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            AG +  G+   + +M       P  +  S L  +    G +  A+ +  KM P
Sbjct: 235 RAGNLSYGKMIHDFIMENNIVVDPHLQ--SALVTMYASCGSMDLALNLFEKMTP 286



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 67/293 (22%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + +   G +  A  LF++M+  + V+  +M+T + +   +  A ++F  M   ++++V 
Sbjct: 265 VTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM--VKKDLVC 322

Query: 61  ESAMIDGYVKAGRVDEARKVFDEI------------------------------------ 84
            SAMI GY ++    EA  +F+E+                                    
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVD 382

Query: 85  ---YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----- 136
              + G +    +LI  Y K   ++  RR+FD+MP   KNV+SWT ++   A +G     
Sbjct: 383 KNGFGGALPINNALIEMYAKCGSLERARRIFDKMP--RKNVISWTCMISAFAMHGDAGSA 440

Query: 137 --LIAKLEV-------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMIT 182
                ++E        I++  +        + +  R+ F  M N+  +      +  M+ 
Sbjct: 441 LRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVD 500

Query: 183 AYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
            +  A  + +A EL   MP   NV  W +++     +G     E AA +LL L
Sbjct: 501 LFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLEL 553


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 226/499 (45%), Gaps = 81/499 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           ++  Y   G    AR +FD   E NV  +  +I  Y       E   +F  M        
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
               P  LK       + +G   +  I K+ + +   +   L     +    + AR+   
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQAS----------- 194
           QMP +D+V+WN+M+  Y                       DAG MA  S           
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 195 ----ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                +F  M ++N+ +WN MI  Y  N     A+ L   M +    P+  T  S+L +C
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 251 EGMLENMLAHAL-------AIRLGFEQETSLT---YKCTCHYVFWDWGFQLDVNSARLAF 300
             +    L   L        +R     E +L     KC C            +  AR  F
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGC------------LEEARDVF 364

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           +++  +DVVSWT+M+ AY   G G+    LFA+ML SG  PD I FV VLS CSH GL++
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGAL 418
           +GR  F +M+  YG  PR EH++C+ D+  RAG+V+EA   + +MP  P+ER   V GAL
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNER---VWGAL 481

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVK 477
           L ACR+H  + +     + L +L P  SG YVL +N++A  G W +   VR  M++  +K
Sbjct: 482 LSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIK 541

Query: 478 KVASFSQIEVKGKDHTLLA 496
           KV   S +E+ G+ HT LA
Sbjct: 542 KVPGISNVELNGQVHTFLA 560



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 55/254 (21%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL---FD 113
           N+   +A++  Y K G + EARKV D++   +V SW S+++GY ++ Q D+   +    D
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 114 RMPLK--------LKNVVSWTTVV-LGCAHNGL--IAKLEVISWTTMCTGLERNAMTKLA 162
            + L         L  VV +T++  +   HN    + K  +ISW  M      N+M   A
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290

Query: 163 REYFVQM------PNKDIVAW---------------------------------NAMITA 183
              F+QM      P+   +A                                  NA++  
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDM 350

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G + +A ++F+ M  R+V +W +M+  Y R+G    A+ L   M  S   P+    
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 244 TSILTSCE--GMLE 255
            S+L++C   G+L+
Sbjct: 411 VSVLSACSHTGLLD 424



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 35/237 (14%)

Query: 11  KEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
            EA  LF +M +    PD V+ AS++        L     L + + +   + N++ E+A+
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENAL 347

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN--V 122
           +D Y K G ++EAR VFD++   +V SWTS++S Y ++ Q  +   LF +M    +N   
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAW 177
           +++ +V+  C+H GL+ +                      R YF  M  +      I  +
Sbjct: 408 IAFVSVLSACSHTGLLDQ---------------------GRHYFRMMTEQYGIVPRIEHF 446

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
             M+  +  AG + +A      MP + N   W A++     +      +   +L+FQ
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQ 503



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN--IVAESAMI 65
           G ++EA  +FD+M   D VS  SM++ + R+     A ALF  M +S +N   +A  +++
Sbjct: 355 GCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 66  DGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                 G +D+ R  F  + E       +  +  ++  + +A +V+E      +MP++  
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPME-P 473

Query: 121 NVVSWTTVVLGC 132
           N   W  ++  C
Sbjct: 474 NERVWGALLSAC 485


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 232/456 (50%), Gaps = 22/456 (4%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  ++ +I  Y+K G +  AR+VFD + + +  S+ S+I GY K   V+    LF  MP
Sbjct: 162 DLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMP 221

Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
            + +N+++W +++ G A       + AKL       ++ISW +M  G  ++   + A+  
Sbjct: 222 REKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGL 281

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP +D+V W  MI  Y   G + +A  LF+ MP R+V  +N+M+    +N     A+
Sbjct: 282 FDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEAL 341

Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQETSLTYKCTCH 281
           ++ N M  +S   P+ET+   +L++    G L   +  H   +   F     L       
Sbjct: 342 EVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDM 401

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y          +  A   FE +E+K +  W AMI   + HG G   F +  ++ +   KP
Sbjct: 402 YSKCG-----SIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKP 456

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D ITFVGVL+ CSH+GLV++G   F LM R +  +PR +HY C+ DIL R+G ++ A  +
Sbjct: 457 DHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNL 516

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           +  MP    D V+    L AC  H +    + + + LI     +  +YVL +N++A+ G 
Sbjct: 517 IEGMPIEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGM 575

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W +  +VR  M E+ ++K+   S IE+ G+ H  L 
Sbjct: 576 WKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFLC 611



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 174/400 (43%), Gaps = 67/400 (16%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV----- 59
           GC G    A ++FD M Q D VS  SMI  +L+   +  A  LF  MP  +RN++     
Sbjct: 177 GCLGF---ARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSM 233

Query: 60  ---------------------------AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                      + ++MI GYVK GR+++A+ +FD +   +V +W
Sbjct: 234 IGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTW 293

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVISW----- 146
             +I GY K   V E + LFD+MP   ++VV + +++ G   N   +  LEV +      
Sbjct: 294 AIMIDGYGKLGLVHEAKTLFDQMP--HRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKES 351

Query: 147 ------TTMCTGLERNA-MTKLARE-----YFV--QMPNKDIVAWNAMITAYVDAGNMAQ 192
                 T++   L   A + +L++      Y V  Q P+   +   A+I  Y   G++  
Sbjct: 352 HLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLG-VALIDMYSKCGSIQH 410

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-- 250
           A  +F  +  +++  WNAMI   A +G   +A  +L  + +    P+  T   +L +C  
Sbjct: 411 AMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSH 470

Query: 251 EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            G+++  L     +R   + E  L  Y C    +      +L  N   +    +E  DV+
Sbjct: 471 SGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN--LIEGMPIEPNDVI 528

Query: 310 SWTAMILAYSNHGHGFQVFRLFAR--MLKSGTKPDEITFV 347
            W   + A S+H   F+   L A+  +L++G  P     +
Sbjct: 529 -WRTFLTACSHHKE-FETGELVAKHLILQAGYNPSSYVLL 566


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 195/354 (55%), Gaps = 40/354 (11%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A++ F     +D+V+WNAMI  YV    M  A  +F+ M  R+V +WN MI+ YA  G  
Sbjct: 220 AKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKP 279

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
             A+ L + M      P E T  S+L++C        AH  A+  G    T +       
Sbjct: 280 NEALALFDQMRAVGVKPTEATVVSLLSAC--------AHLGALDKGLHLHTYINDN---- 327

Query: 282 YVFWDWGFQLDVNS------------------ARLAFERLEAKDVVSWTAMILAYSNHGH 323
                   +++VNS                  A   F  +E+KDV++W  +I   + HG+
Sbjct: 328 --------RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGN 379

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +  +LF  M ++G +P++ITFV +LS CSHAG+V++G+K  + MS +YG +P+ EHY 
Sbjct: 380 VKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG 439

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+L RAG ++EAM ++  M P E +   LGALLG CR+HG+  + + +G+RLI LQP
Sbjct: 440 CVIDLLARAGFLEEAMELIGTM-PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQP 498

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
             SG Y+L +N++AA  +WD+  +VR  M+   + KV   S IE+KG  H  +A
Sbjct: 499 CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 552



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 23/236 (9%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D    +S+I ++    DL  A+ LF     S R++V+ +AMIDGYVK   +  AR VFD 
Sbjct: 200 DSYIVSSLIHLYANGKDLGAAKQLFNLC--SARDVVSWNAMIDGYVKHVEMGHARMVFDR 257

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLIAKL 141
           +   +V SW ++I+GY    + +E   LFD+M          T V L   CAH G + K 
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK- 316

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                     GL  +      R   +++   + +   A++  Y   G ++ A+++FN M 
Sbjct: 317 ----------GLHLHTYINDNR---IEV---NSIVGTALVDMYAKCGKISLATQVFNAME 360

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            ++V  WN +I   A +G    A +L   M ++   PN+ T  +IL++C   GM++
Sbjct: 361 SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVD 416



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 129/310 (41%), Gaps = 53/310 (17%)

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +A A  +F+ +       +N++I   + +     A+ L + M QS   P+  T   ++ +
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175

Query: 250 C-EGMLE--NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C E  +    +L H   ++ GFE ++ +       Y         D+ +A+  F    A+
Sbjct: 176 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGK-----DLGAAKQLFNLCSAR 230

Query: 307 DVVSWTAMILAYSNH---GHGFQVFR----------------------------LFARML 335
           DVVSW AMI  Y  H   GH   VF                             LF +M 
Sbjct: 231 DVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMR 290

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS----CLADILRR 391
             G KP E T V +LS C+H G ++KG     L    Y    R E  S     L D+  +
Sbjct: 291 AVGVKPTEATVVSLLSACAHLGALDKG-----LHLHTYINDNRIEVNSIVGTALVDMYAK 345

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGA 448
            G++  A +V + M    +D +    ++    +HG+V+ A  + + + E  ++P+  +  
Sbjct: 346 CGKISLATQVFNAM--ESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFV 403

Query: 449 YVLSANVHAA 458
            +LSA  HA 
Sbjct: 404 AILSACSHAG 413



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           GK+  AT++F+ M   D ++  ++I     + ++ +A+ LF+ M E+  + N +   A++
Sbjct: 347 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 406

Query: 66  DGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                AG VDE +K+ D +      E  V  +  +I    +A  ++E   L   MP++  
Sbjct: 407 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME-P 465

Query: 121 NVVSWTTVVLGCAHNG 136
           N  +   ++ GC  +G
Sbjct: 466 NPSALGALLGGCRIHG 481


>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Glycine max]
          Length = 453

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 222/407 (54%), Gaps = 37/407 (9%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +V SWT++++G  K  +V++ R LFDRMP++  NVVSW  +++G A N  + +       
Sbjct: 45  DVVSWTTMVAGLLKNGRVEDARALFDRMPVR--NVVSWNAMIMGHAQNRRLHE------- 95

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                         A E F  MP +D+ +WN MIT ++  G +  A +LF  M ++N  T
Sbjct: 96  --------------ALELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAIT 141

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCE---GMLENMLAHALA 263
           W AM+  Y ++G    A+K+ N M  +  + PN  T  ++L +C    G+ E    H + 
Sbjct: 142 WTAMMMGYVQHGLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMI 201

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSWTAMILAYSNH 321
            +  F+          C  +   +    ++++A+  F+   L  +D++SW  MI  Y++H
Sbjct: 202 SKTVFQDSX------ICGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHH 255

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G+G +   LF  M + G   +++TFVG+L  CSH G+VE+G K F+ + +      R +H
Sbjct: 256 GYGKEAINLFNEMQELGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDH 315

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y+CL D+  R G++KEA  ++  +   E    V G LL  C +HG+V +   + ++++++
Sbjct: 316 YACLVDLCDRTGRLKEAFNIIEGLGK-ESPLTVWGVLLARCNVHGNVDIGKLVAKKILKI 374

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           +P ++G + L +N++A+ G+W E A +R KM ++ +KK   +S IEV
Sbjct: 375 EPQNAGTHSLLSNMYASVGKWKEAANIRMKMNDKGLKKQPGYSWIEV 421



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 26/259 (10%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D VS  +M+   L+N  +  A ALF  MP   RN+V+ +AMI G+ +  R+ EA ++F  
Sbjct: 45  DVVSWTTMVAGLLKNGRVEDARALFDRMP--VRNVVSWNAMIMGHAQNRRLHEALELFQG 102

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LE 142
           + E +++SW ++I+G+ +  +++   +LF  M  + KN ++WT +++G   +GL  + L+
Sbjct: 103 MPERDMHSWNTMITGFIQNGKLNYAEKLFGEM--REKNAITWTAMMMGYVQHGLSEEALK 160

Query: 143 VISWTTMCTGLERN---------AMTKLA----REYFVQMPNK----DIVAWNAMITAYV 185
           V +      GL+ N         A + LA     +   QM +K    D      +I  Y 
Sbjct: 161 VFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXICGTLINMYP 220

Query: 186 DAGNMAQASELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
             G +  A  +F+  L+ QR++ +WN MI  YA +G    A+ L N M +     N+ T 
Sbjct: 221 KCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTF 280

Query: 244 TSILTSCE--GMLENMLAH 260
             +L +C   G++E  L +
Sbjct: 281 VGLLRACSHTGVVEEGLKY 299


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 230/457 (50%), Gaps = 30/457 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S ++D Y K G + +AR+VF E+    V  + +LI+G  + + +++ + LF  M  +  +
Sbjct: 185 SPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDR--D 242

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVI----------------SWTTMCTGLERNAMTKLARE 164
            ++WTT+V G   NGL +  L+V                 S  T C  L  +   K    
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 302

Query: 165 YFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +   +D +   +A++  Y    ++  A  +F  M  RN+ +W AMI  Y +N     
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTC 280
           A++  + M      P++ T  S+++SC  +    E    H LA+  G  +  +++     
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y     G    +  A   F+ +   D VSWTA++  Y+  G   +   LF +ML +G K
Sbjct: 423 LY-----GKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLK 477

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD +TF+GVLS CS AGLVEKG   F+ M + +   P  +HY+C+ D+  R+G+ KEA  
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEE 537

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            + +M PH  D      LL +CRL G++ +  +  E L+E  P +  +YVL  ++HAA+G
Sbjct: 538 FIKQM-PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKG 596

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +W E A +R+ M +R+VKK    S I+ K K H   A
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSA 633



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 167/403 (41%), Gaps = 67/403 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y K+GR+  AR+VFDE+ + N+++  +L+S    +R V +  RLF  MP   ++ V
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP--ERDAV 111

Query: 124 SWTTVVLGCAHNGLIA------------------KLEVISWTTMCTGLERNAMTK----- 160
           S+  ++ G +  G  A                  ++ + +   + + L   A+       
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 161 -----LAREYFVQMPNKDIVA----------------------WNAMITAYVDAGNMAQA 193
                     FV  P  D+ A                      +N +IT  +    +  A
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LF LM  R+  TW  M+    +NG +  A+ +   M       ++ T  SILT+C  +
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGAL 291

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA---FERLEAKD 307
               E    HA   R  +E    +       Y            S RLA   F R+  ++
Sbjct: 292 AASEEGKQIHAYITRTWYEDNVFVGSALVDMYS--------KCRSIRLAEAVFRRMTCRN 343

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           ++SWTAMI+ Y  +    +  R F+ M   G KPD+ T   V+S C++   +E+G + F+
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FH 402

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
            ++   G        + L  +  + G +++A R+  +M  H++
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 445



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 21/205 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N+   SA++D Y K   +  A  VF  +   N+ SWT++I GY +    +E  R F  
Sbjct: 310 EDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSE 369

Query: 115 MPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M +       +T  +V+  CA+   + +        + +GL R                 
Sbjct: 370 MQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY---------------- 413

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            I   NA++T Y   G++  A  LF+ M   +  +W A++  YA+ G     + L   M 
Sbjct: 414 -ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 233 QSRFMPNETTCTSILTSCE--GMLE 255
            +   P+  T   +L++C   G++E
Sbjct: 473 VNGLKPDGVTFIGVLSACSRAGLVE 497



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 30/228 (13%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ---R 56
           +G     +EA + F EM     +PD  +  S+I+       L +  A F  +       R
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMR 412

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            I   +A++  Y K G +++A ++FDE+   +  SWT+L++GY +  +  E   LF++M 
Sbjct: 413 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 117 LK-LK-NVVSWTTVVLGCAHNGLIAK-----------LEVIS----WTTMCTGLERNAMT 159
           +  LK + V++  V+  C+  GL+ K            +++     +T M     R+   
Sbjct: 473 VNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRF 532

Query: 160 KLAREYFVQMPNK-DIVAWNAMITAYVDAGNMA----QASELFNLMPQ 202
           K A E+  QMP+  D   W  ++++    GNM      A  L    PQ
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 237/482 (49%), Gaps = 57/482 (11%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA-----RK 79
           P + A +++ + R+  LP A   F   P  +R++   SA++     +   +       R 
Sbjct: 36  PSAPALLVSAYARSCLLPDARRAFDDAP--RRDLHLYSALLAAVSHSSDPELVLPLLRRM 93

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRL---FDRMPLKLKNVVSWTTVVLGCAHNG 136
           + D+    + +   SL S   + R +  GR+L   F   P    NVV  + + + C    
Sbjct: 94  LSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYC---- 149

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                             +  + + AR+ F  +  K+ V W A+I+ Y   G   +A +L
Sbjct: 150 ------------------KCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDL 191

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F  MP   ++TW A+I  + + G    AM L   M +     ++    + +      L  
Sbjct: 192 FQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAA 251

Query: 257 MLA----HALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           ++     H   +RLGF            +  KC+            D++SAR  FE +  
Sbjct: 252 LVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCS------------DIHSAREVFEGITV 299

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +DV+SWT +++  + HG   +VF L+ RML +G KP+E+TFVG++  CSHAGLV+KGR+ 
Sbjct: 300 RDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQL 359

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F+ M R YG KP  +HY+C  D+L R+G + EA ++++ M P+E D    GALL AC+ H
Sbjct: 360 FDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTM-PYEPDEATWGALLSACKKH 418

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            D +M   + + L+EL+P     Y+L +NV+A   +WD  A+VRK M E  ++KV  +S 
Sbjct: 419 NDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSW 478

Query: 485 IE 486
           +E
Sbjct: 479 VE 480



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 69/289 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G  ++A K+FD +   + V   ++I+ +  N    +A  LF++MP     +   +A+I G
Sbjct: 152 GVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMP--AHGLFTWTALISG 209

Query: 68  YVKAGRVDEARKVF-----DEIYEGNVYSWTSLISG------------------------ 98
           +VKAG    A  +F     D+I   + +   ++I G                        
Sbjct: 210 FVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLS 269

Query: 99  -----------YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
                      Y K   +   R +F+   + +++V+SWTT+++G A +G   ++  +   
Sbjct: 270 SMIVGNALVDMYSKCSDIHSAREVFE--GITVRDVISWTTILVGEAQHGRAEEVFALYNR 327

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR---- 203
            +  G++ N +T      FV            +I A   AG + +  +LF+ M +     
Sbjct: 328 MLLAGMKPNEVT------FV-----------GLIYACSHAGLVQKGRQLFDSMKREYGMK 370

Query: 204 -NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
             V  +   +D  +R+G    A KL+  M    + P+E T  ++L++C+
Sbjct: 371 PGVQHYTCYLDLLSRSGYLSEAEKLITTM---PYEPDEATWGALLSACK 416


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/506 (30%), Positives = 264/506 (52%), Gaps = 42/506 (8%)

Query: 3   QFGCTGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI 58
           QFG  G   EA  LF EM     +PD  + + +I+       L   + L          +
Sbjct: 248 QFGYAG---EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL 304

Query: 59  --VAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE-GRRLF 112
                  +I+ Y K    G +  ARK+FD+I + NV+SWT++I+GY +    DE    LF
Sbjct: 305 DRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLF 364

Query: 113 DRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
             M L   + N  ++++ +  CA+   +A L +               T   +  F  + 
Sbjct: 365 RGMILTHVIPNHFTFSSTLKACAN---LAALRI----------GEQVFTHAVKLGFSSV- 410

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             + VA N++I+ Y  +G +  A + F+++ ++N+ ++N +ID YA+N     A++L N 
Sbjct: 411 --NCVA-NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467

Query: 231 MFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           +       +  T  S+L+   S   + +    HA  I+ G +   S+     C+ +   +
Sbjct: 468 IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV-----CNALISMY 522

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               ++ SA   FE +E ++V+SWT++I  ++ HG   Q   LF +ML+ G +P+ +T++
Sbjct: 523 SRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYI 582

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VLS CSH GLV +G K F  M   +G  PR EHY+C+ DIL R+G + EA++ ++ M P
Sbjct: 583 AVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSM-P 641

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
           ++ D +V    LGACR+HG++ +  +  + +IE +P    AY+L +N++A+  +WDE + 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSN 701

Query: 468 VRKKM-ERRVKKVASFSQIEVKGKDH 492
           +RK M E+ + K A  S +EV+ K H
Sbjct: 702 IRKAMKEKNLIKEAGCSWVEVENKVH 727



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 177/414 (42%), Gaps = 36/414 (8%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMIDGYVKAGRV 74
           F   + P+P++    +   + N  L KA +    M    S  ++   S  +   ++    
Sbjct: 25  FPTFTNPNPLT--GRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 75  DEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
           D    V +++ + ++     +  SLIS Y K  Q ++   +F  M    ++++SW+ +V 
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSS-RDLISWSAMVS 141

Query: 131 GCAHN-----GLIAKLEVI------------SWTTMCTGLERNAMTKLAREYFVQMP--N 171
             A+N      L+  +++I            + T  C+  E  ++      + V+     
Sbjct: 142 CFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQ 201

Query: 172 KDIVAWNAMITAYVDA-GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            D+     +I  +V   G++  A ++F  MP+RN  TW  MI R  + G  G A+ L   
Sbjct: 202 SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLE 261

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M  S + P+  T + ++++C  M   +L    H+ AIR G   +  +   C    ++   
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV--GCCLINMYAKC 319

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAY-SNHGHGFQVFRLFARMLKSGTKPDEITF 346
                + +AR  F+++   +V SWTAMI  Y    G+  +   LF  M+ +   P+  TF
Sbjct: 320 SVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTF 379

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
              L  C++   +  G + F    +  GF       + L  +  R+G++ +A +
Sbjct: 380 SSTLKACANLAALRIGEQVFTHAVK-LGFSSVNCVANSLISMYARSGRIDDARK 432



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 102/246 (41%), Gaps = 59/246 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +  +G++ +A K FD + + + +S  ++I  + +N +  +A  LF  + +        
Sbjct: 419 SMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAF 478

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         + N    +A+I  Y + G ++ A +VF+++
Sbjct: 479 TFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH-------- 134
            + NV SWTS+I+G+ K     +   LF +M  +    N+V++  V+  C+H        
Sbjct: 539 EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGW 598

Query: 135 ---------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAY 184
                    +G+I ++E   +  M   L R+     A ++   MP K D + W   + A 
Sbjct: 599 KHFKSMYTEHGVIPRME--HYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 185 VDAGNM 190
              GN+
Sbjct: 657 RVHGNL 662



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
           ++D++SW+AM+  ++N+  GF+    F  M+++G  P+E  F      CS A  V  G  
Sbjct: 130 SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDS 189

Query: 365 TFNLMSRAYGFKPRAEHYSC-LADILRRA-GQVKEAMRVVSKMPPHERDHV 413
            F  + +  G+        C L D+  +  G +  A +V  KMP  ER+ V
Sbjct: 190 IFGFVVKT-GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP--ERNAV 237


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/533 (26%), Positives = 249/533 (46%), Gaps = 74/533 (13%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHD-----------------LP----- 42
            C   V     L++ + +PD   C +++  F+  +D                 LP     
Sbjct: 102 ACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTF 161

Query: 43  ----KAEALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
               K  A   ++ E Q+            ++   ++ I  Y   GR  +AR VFD  + 
Sbjct: 162 PLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFV 221

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++ SW S+I GY K  ++   R +FD M                        + ++ +W
Sbjct: 222 LDLVSWNSMIDGYVKNGELGLAREIFDEM-----------------------YERDIFTW 258

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            +M +G       + AR  F +MP++D+V+WN MI  +    +++ A++ F+ MP RNV 
Sbjct: 259 NSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVV 318

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALA 263
           +WN M+  Y R       ++  ++M    F+P+E +  S+LT+C   + + +    H+  
Sbjct: 319 SWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYM 378

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
              G + +  L+      Y          ++ AR  F+++  K VVSW +MI+ Y  HGH
Sbjct: 379 KDNGIKPDMLLSTALLTMYAKCG-----AMDLAREVFDKMPEKSVVSWNSMIIGYGIHGH 433

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           G +   +F  M K G  P++ TF+ VLS CSH+G+V  G   F+LM R Y  +P+ EHY 
Sbjct: 434 GDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYG 493

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           CL D+L +AG +KE    +++    E +  + G LL ACR H      + + ++LI+L P
Sbjct: 494 CLVDLLGQAG-LKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEPGEILAKQLIKLFP 552

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
           +    Y+L +N + A G WD+   +R  ++ +       S++    + H++L+
Sbjct: 553 NHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTLN----SKMVFTSRRHSMLS 601



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 136/273 (49%), Gaps = 24/273 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+  +A  +FD     D VS  SMI  +++N +L  A  +F  M E  R+I   ++
Sbjct: 203 YSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYE--RDIFTWNS 260

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           MI GYV  G ++ AR +FD++   +V SW  +I G+ + + V    + FD MP  L+NVV
Sbjct: 261 MISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMP--LRNVV 318

Query: 124 SWTTVV---LGCAH--------------NGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166
           SW  ++   L C                + +  +  ++S  T C  L+     K    Y 
Sbjct: 319 SWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYM 378

Query: 167 VQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
                K D++   A++T Y   G M  A E+F+ MP+++V +WN+MI  Y  +G    A+
Sbjct: 379 KDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKAL 438

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC--EGMLEN 256
           ++   M +   MPN+ T  S+L++C   GM+ N
Sbjct: 439 EMFREMEKGGPMPNDATFMSVLSACSHSGMVWN 471


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 233/464 (50%), Gaps = 37/464 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD-------- 113
           +++I  YV  G  + AR++FDE+ + NV S+ ++I G+ K   +     LF         
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 114 ----RMPLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREY 165
                M   L          LG + +  I K      +I +  +     +    KLAR+ 
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F     KD V+WN +I  Y   G +  A +LFN +P R++ +WN++I  YA+NG      
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 281

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRL-----GFEQETSLTYK 277
            L   MF     P++ T  +++++   M    +    H LA+++      F     +   
Sbjct: 282 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 341

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C C            +  A + F ++  KDV +WT MI  ++ HG G +   LF+ M ++
Sbjct: 342 CKCG----------SIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QA 390

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
            TKP+++TFV VL+ CSH+GLV++G K F+ M + Y  +P  EHY CL D+L R+G++ +
Sbjct: 391 ETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLD 450

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ V+ KM P E    + GA+L ACR+H ++ +A+     L++L+P   G Y+L +NV+A
Sbjct: 451 AIGVIEKM-PMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYA 509

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMRE 500
             G W     +R+ M  R VKK+A  S + V G  H   A  ++
Sbjct: 510 TCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQ 553



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 58/299 (19%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------ 54
            G  + A +LFDEMS  + VS  +MI  F +  ++     LF  M      P+       
Sbjct: 111 NGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGL 170

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N++  +A++D YVK   +  ARKVFD   E + 
Sbjct: 171 LLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDT 230

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW ++I+GY K  +++    LF+++P   +++VSW +++ G A NG    ++ +     
Sbjct: 231 VSWNTIIAGYAKVGELELACDLFNQIP--TRDIVSWNSLISGYAQNGDYVTVKCLFTRMF 288

Query: 150 CTGLERNAMT-----------------KLAREYFVQMPNK-DIVAWNAMITAYVDAGNMA 191
              ++ + +T                 +      V+M  K +  + +A+I  Y   G++ 
Sbjct: 289 AENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIE 348

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +A  +FN +P+++V TW  MI  +A +G    A++L ++M Q+   PN+ T  S+L +C
Sbjct: 349 RAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAAC 406



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 24/225 (10%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--ESAMIDGYVKA 71
           T++F E  +PD V+  ++I+       L +   +     +    I A   SA+ID Y K 
Sbjct: 285 TRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKC 344

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVL 130
           G ++ A  +F++I E +V +WT++I+G+      ++   LF  M  + K N V++ +V+ 
Sbjct: 345 GSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLA 404

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            C+H+GL+ +           GL+    + + + Y ++     +  +  ++     +G +
Sbjct: 405 ACSHSGLVDE-----------GLK--IFSSMKKRYSIE---PGVEHYGCLVDLLCRSGRL 448

Query: 191 AQASELFNLM---PQRNVWTWNAMIDRYARNG--PEGAAMKLLNL 230
             A  +   M   P R++W       R  RN    E A M+LL L
Sbjct: 449 LDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKL 493



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 12/245 (4%)

Query: 189 NMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           N+  A  LFN   P  N++ +N MI  +  +  +  A  +   M Q+   P+  T   +L
Sbjct: 15  NLELAILLFNHFTPYPNLYIFNTMILGFPFSNEK--AFTIYRSMLQNGTYPDRQTFLYLL 72

Query: 248 TSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            + + + E    H  A+  G   +E  L       YV  D G       AR  F+ +  +
Sbjct: 73  QTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYV--DNGC---FECARQLFDEMSDR 127

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +VVS+  MIL ++  G+   +  LF  M   G +PD+ T +G+L  C   G  + G+   
Sbjct: 128 NVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVH 187

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             + ++ G       Y+ L D+  +  ++K A +V     P E+D V    ++      G
Sbjct: 188 AQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVFDG--PMEKDTVSWNTIIAGYAKVG 244

Query: 427 DVRMA 431
           ++ +A
Sbjct: 245 ELELA 249


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/580 (27%), Positives = 255/580 (43%), Gaps = 98/580 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-------- 53
           G++  A +LFDEM   D V+  +M+  + +     +A  LF  M      P+        
Sbjct: 19  GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATL 78

Query: 54  -----------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q ++   +++ID Y K      AR+VF+E+   N  
Sbjct: 79  SACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEV 138

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------------- 136
           SW SL+  Y  +   D  R +FD MP K++  ++W  ++ G    G              
Sbjct: 139 SWCSLLFAYTSSGLFDVARVVFDGMPKKVE--IAWNIMISGYGQCGDVELCLGLFKKMRE 196

Query: 137 ---------------LIAKLEVISWTTMCTG-------LERNAMTKLAREYFVQMPNKD- 173
                           + +L+  S+  M  G       ++   ++     ++ ++  KD 
Sbjct: 197 DSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDD 256

Query: 174 ------------IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                        V+WNAMI A++  G+  +A  +F L P++NV +W +MI  YARNG  
Sbjct: 257 VMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHG 316

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKC 278
             A+     M ++   P++ T  ++L +C  +       + H   I  GF     +    
Sbjct: 317 EQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGL 376

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y         D+  +  AF+ +  KD+VSW AM+     HGH  Q   L+  M+ SG
Sbjct: 377 VNMYAKCG-----DIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASG 431

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KPD++TF+G+L  CSH+GL+EKG+  F  M   YG     EH  C+ D+L R G + +A
Sbjct: 432 MKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA 491

Query: 399 MRVVSKMPPHERDHVVLG-ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
             +V +     R    L  ALLGAC  H +VRM   +GE L   +P    +YVL +N++ 
Sbjct: 492 RELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYC 551

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             G+W E   VRK M +  VKK+   S IEV+ K    +A
Sbjct: 552 VSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVA 591



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 13/212 (6%)

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I A    G +  A  LF+ MP ++   WNAM+  Y++ G    A+ L + M  +   P+ 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 241 TTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T T+ L++C G+ E    M  HA  +  G +    +       Y     G  L   SAR
Sbjct: 72  FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMY-----GKCLSATSAR 126

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE +   + VSW +++ AY++ G    +F +   +     K  EI +  ++S     G
Sbjct: 127 RVFEEMSIMNEVSWCSLLFAYTSSG----LFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            VE     F  M R    +P    +S L + L
Sbjct: 183 DVELCLGLFKKM-REDSLQPDQWTFSALVNAL 213



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 112/275 (40%), Gaps = 55/275 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S+ GC   V    K+F+ +     VS  +MI   ++  D  +A  +F+  PE  +N+V+ 
Sbjct: 249 SKLGCKDDV---MKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPE--KNVVSW 303

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++MI GY + G  ++A   F ++ E ++              Q D+              
Sbjct: 304 TSMITGYARNGHGEQALSFFVKMMENHI--------------QPDD-------------- 335

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             ++  V+  C+    +   ++I  + +  G                  +  +   N ++
Sbjct: 336 -FTFGAVLHACSSLATLGHGKMIHGSIIHYGF-----------------HAYVDVGNGLV 377

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++  ++  F  +  +++ +WNAM+     +G    A++L   M  S   P++ 
Sbjct: 378 NMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKV 437

Query: 242 TCTSILTSC--EGMLE--NMLAHALAIRLGFEQET 272
           T   +L +C   G++E    L  ++    G  QET
Sbjct: 438 TFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQET 472


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/499 (31%), Positives = 225/499 (45%), Gaps = 81/499 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           ++  Y   G    AR +FD   E NV  +  +I  Y       E   +F  M        
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
               P  LK       + +G   +  I K+ + +   +   L     +    + AR+   
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQAS----------- 194
           QMP +D+V+WN+M+  Y                       DAG MA  S           
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 195 ----ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                +F  M ++N+ +WN MI  Y  N     A+ L   M +    P+  T  S+L +C
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 251 EGMLENMLAHALA--IRLGFEQETSLT--------YKCTCHYVFWDWGFQLDVNSARLAF 300
             +    L   L   I  G  Q   L          KC C            +  AR  F
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGC------------LEEARDVF 364

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           +++  +DVVSWT+M+ AY   G G+    LFA+ML SG  PD I FV VLS CSH GL++
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGAL 418
           +GR  F +M+  YG  PR EH++C+ D+  RAG+V+EA   + +MP  P+ER   V GAL
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNER---VWGAL 481

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVK 477
           L ACR+H  + +     + L +L P  SG YVL +N++A  G W +   VR  M++  +K
Sbjct: 482 LSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIK 541

Query: 478 KVASFSQIEVKGKDHTLLA 496
           KV   S +E+ G+ HT LA
Sbjct: 542 KVPGISNVELNGQVHTFLA 560



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 55/254 (21%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL---FD 113
           N+   +A++  Y K G + EARKV D++   +V SW S+++GY ++ Q D+   +    D
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 114 RMPLK--------LKNVVSWTTVV-LGCAHNGL--IAKLEVISWTTMCTGLERNAMTKLA 162
            + L         L  VV +T++  +   HN    + K  +ISW  M      N+M   A
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290

Query: 163 REYFVQM------PNKDIVAW---------------------------------NAMITA 183
              F+QM      P+   +A                                  NA++  
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDM 350

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G + +A ++F+ M  R+V +W +M+  Y R+G    A+ L   M  S   P+    
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 244 TSILTSCE--GMLE 255
            S+L++C   G+L+
Sbjct: 411 VSVLSACSHTGLLD 424



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 35/237 (14%)

Query: 11  KEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
            EA  LF +M +    PD V+ AS++        L     L + + +   Q N++ E+A+
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENAL 347

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN--V 122
           +D Y K G ++EAR VFD++   +V SWTS++S Y ++ Q  +   LF +M    +N   
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAW 177
           +++ +V+  C+H GL+ +                      R YF  M  +      I  +
Sbjct: 408 IAFVSVLSACSHTGLLDQ---------------------GRHYFRMMTEQYGIVPRIEHF 446

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
             M+  +  AG + +A      MP + N   W A++     +      +   +L+FQ
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQ 503



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN--IVAESAMI 65
           G ++EA  +FD+M   D VS  SM++ + R+     A ALF  M +S +N   +A  +++
Sbjct: 355 GCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVL 414

Query: 66  DGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                 G +D+ R  F  + E       +  +  ++  + +A +V+E      +MP++  
Sbjct: 415 SACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPME-P 473

Query: 121 NVVSWTTVVLGC 132
           N   W  ++  C
Sbjct: 474 NERVWGALLSAC 485


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 250/537 (46%), Gaps = 77/537 (14%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP+   +++ ++ +   L  A  LF  MP++  N+V  + MI G+V+ G +DEA  +F E
Sbjct: 107 DPLVANALVAMYSKFGQLSDALKLFNTMPDT--NVVTWNGMIAGFVQNGFMDEASLLFSE 164

Query: 84  IYEG---------------------------------------NVYSWTSLISGYFKARQ 104
           +                                          +V+  ++LI  YFK R 
Sbjct: 165 MISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRD 224

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWT---------------- 147
           V    ++F +      ++V  T ++ G   NGL    LE+  W                 
Sbjct: 225 VGMACKIFKQS--TNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVL 282

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIV----AWNAMITAYVDAGNMAQASELFNLMPQR 203
             C GL   A   L +E    +    +       +A++  Y   G +  A ++F  MP++
Sbjct: 283 PACAGL---ATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK 339

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAH 260
           +   WNA+I   ++NG    A+ L   M +     +  + ++ L++C     +      H
Sbjct: 340 DAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIH 399

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           +  I+  F+ E          Y     G   +++ AR  F+ +  K+ VSW ++I AY +
Sbjct: 400 SFMIKGAFDSEVFAESALIDMY-----GKCGNLSVARCVFDMMREKNEVSWNSIIAAYGS 454

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HGH      LF +ML+ G +PD +TF+ +LS C HAG V+KG + F  M+  YG   R E
Sbjct: 455 HGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARME 514

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+  RAG++ EA   +  M P   D  V G LLGACR+HG+V +A+     L++
Sbjct: 515 HYACIVDLFGRAGRLNEAFETIKNM-PFSPDDGVWGTLLGACRVHGNVELAEVASRCLLD 573

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           L P +SG YVL +NVHA  G+W    ++R  M++R V+KV  +S IEV    H  +A
Sbjct: 574 LDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVA 630



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 159/372 (42%), Gaps = 34/372 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKL 119
           S++I  Y + G +++AR++FD++   +   W  +++G+ K  + +   ++F+ M      
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N +++ +V+  CA   L      +    +  G   + +                   NA
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVA-----------------NA 113

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G ++ A +LFN MP  NV TWN MI  + +NG    A  L + M  +   P+
Sbjct: 114 LVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPD 173

Query: 240 ETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNS 295
             T  S L   T    + +    H   +R G   +  L           D  F+  DV  
Sbjct: 174 SITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLK------SALIDIYFKCRDVGM 227

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F++    D+V  TA+I  Y  +G       +F  +L+    P+ +T   VL  C+ 
Sbjct: 228 ACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAG 287

Query: 356 AGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
              +  G++   N++   +G   R    S + D+  + G++  A ++  +MP  E+D V 
Sbjct: 288 LATLNLGKELHANILK--HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP--EKDAVC 343

Query: 415 LGALLGACRLHG 426
             A++  C  +G
Sbjct: 344 WNAIITNCSQNG 355



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 209/502 (41%), Gaps = 54/502 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +++A +LFD+M   D V    M+  F++  +   A  +F  M   Q      +++  
Sbjct: 20  NGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ---TKPNSITF 76

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSW---------TSLISGYFKARQVDEGRRLFDRMPL 117
             V +    EA   F     G V S           +L++ Y K  Q+ +  +LF+ MP 
Sbjct: 77  ASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMP- 135

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------------KLAR 163
              NVV+W  ++ G   NG + +  ++    +  G+  +++T              K  +
Sbjct: 136 -DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGK 194

Query: 164 E---YFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           E   Y ++     D+   +A+I  Y    ++  A ++F      ++    A+I  Y  NG
Sbjct: 195 EIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNG 254

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTY 276
               A+++   + + +  PN  T  S+L +C G+    L    HA  ++ G ++   +  
Sbjct: 255 LNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGS 314

Query: 277 KCTCHYV---FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
                Y      D  +Q+        F R+  KD V W A+I   S +G   +   LF +
Sbjct: 315 AIMDMYAKCGRLDLAYQI--------FRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQ 366

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M + G   D ++    LS C++   +  G+   + M +   F       S L D+  + G
Sbjct: 367 MGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKG-AFDSEVFAESALIDMYGKCG 425

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYV 450
            +  A  V   M   E++ V   +++ A   HG + ++  +  +++E  +QP   +   +
Sbjct: 426 NLSVARCVFDMM--REKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTI 483

Query: 451 LSANVHAARGEWDEFAQVRKKM 472
           LSA  HA  G+ D+  Q  + M
Sbjct: 484 LSACGHA--GQVDKGIQYFRCM 503



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 13/260 (5%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           N D    +++I  Y + G +  A  LF+ MP ++   WN M++ + + G   +A+K+   
Sbjct: 4   NVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFED 63

Query: 231 MFQSRFMPNETTCTSILTSC--EGMLE--NMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           M   +  PN  T  S+L+ C  E + E  N L H L I  GF  +  +       Y  + 
Sbjct: 64  MRNCQTKPNSITFASVLSICASEALSEFGNQL-HGLVISCGFHFDPLVANALVAMYSKFG 122

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 ++ A   F  +   +VV+W  MI  +  +G   +   LF+ M+ +G  PD ITF
Sbjct: 123 -----QLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITF 177

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
              L   + +  +++G++    + R +G        S L DI  +   V  A ++  +  
Sbjct: 178 ASFLPSVTESASLKQGKEIHGYILR-HGIALDVFLKSALIDIYFKCRDVGMACKIFKQ-- 234

Query: 407 PHERDHVVLGALLGACRLHG 426
               D VV  A++    L+G
Sbjct: 235 STNVDIVVCTAIISGYVLNG 254


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 251/500 (50%), Gaps = 43/500 (8%)

Query: 13  ATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN----IVAESAM 64
           A +L  EM+    +P  V+  SM+ +F    ++   +A+   +  +  N    +   +A+
Sbjct: 179 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 238

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           +D Y K G +  AR++F+ + +  V SWT++I+G  ++ +++EG +LF RM  +    N 
Sbjct: 239 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNE 298

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           ++  ++++ C   G +              L +     + R  F    +  +    A++ 
Sbjct: 299 ITMLSLIVECGFTGALQ-------------LGKQLHAYILRNGF----SVSLALATALVD 341

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y    ++  A  LF+    R+V  W AM+  YA+      A  L + M  S   P + T
Sbjct: 342 MYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVT 401

Query: 243 CTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQL-DVNSA 296
             S+L+ C        A A A+ LG     +  +  +   C  +    D   +  D+N+A
Sbjct: 402 IVSLLSLC--------AVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F    ++D+  W A+I  ++ HG+G +   +FA M + G KP++ITF+G+L  CSHA
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 513

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV +G+K F  M   +G  P+ EHY C+ D+L RAG + EA  ++  MP  + + +V G
Sbjct: 514 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI-KPNTIVWG 572

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-R 475
           AL+ ACRLH + ++ +    +L+E++P + G  VL +N++AA   W + A VRK M+   
Sbjct: 573 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 632

Query: 476 VKKVASFSQIEVKGKDHTLL 495
           +KK    S IEV G  H  L
Sbjct: 633 MKKEPGHSVIEVNGTVHEFL 652



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 172/381 (45%), Gaps = 38/381 (9%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R++   +A++  Y +   V+ AR VFD++ E +V SW+++I    + ++ D        M
Sbjct: 127 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFD--------M 178

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD-- 173
            L+L   +++  V          +++ ++S   +        M K    Y ++  N +  
Sbjct: 179 ALELIREMNFMQV--------RPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM 230

Query: 174 -IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +    A++  Y   G++  A +LFN + Q+ V +W AMI    R+       KL   M 
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +    PNE T  S++  C   G L+     HA  +R GF    +L       Y     G 
Sbjct: 291 EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMY-----GK 345

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D+ +AR  F+  + +DV+ WTAM+ AY+      Q F LF +M  SG +P ++T V +
Sbjct: 346 CSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 405

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE----HYSCLADILRRAGQVKEAMRVVSKM 405
           LS C+ AG ++ G+        +Y  K R E      + L D+  + G +  A R+   +
Sbjct: 406 LSLCAVAGALDLGKWV-----HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLF--I 458

Query: 406 PPHERDHVVLGALLGACRLHG 426
               RD  +  A++    +HG
Sbjct: 459 EAISRDICMWNAIITGFAMHG 479



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 9/254 (3%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D+   NA++  Y +   +  A  +F+ M +R+V +W+ MI   +RN     A++L+  
Sbjct: 126 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 185

Query: 231 MFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M   +  P+E    S++        M      HA  IR    +   +        ++   
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G    +  AR  F  L  K VVSWTAMI          +  +LF RM +    P+EIT +
Sbjct: 246 GH---LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML 302

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            ++ +C   G ++ G++    + R  GF       + L D+  +   ++ A  +      
Sbjct: 303 SLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDMYGKCSDIRNARALFDS--T 359

Query: 408 HERDHVVLGALLGA 421
             RD ++  A+L A
Sbjct: 360 QNRDVMIWTAMLSA 373


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/508 (29%), Positives = 256/508 (50%), Gaps = 43/508 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A  +F  MP   R++ + +AM+      GR+D A  +F+ +   ++
Sbjct: 204 SVLNMYGKCGDAETASTVFERMP--VRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI 261

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNG---------- 136
            SW ++I+GY +     +  +LF RM        +  + T+V+  CA+ G          
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 137 LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKD--IVAWNAMITAYVDAGNM 190
            I + E+   + +   L     ++   + AR    Q    D  ++++ A++  YV  G+M
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A E+F +M  R+V  W AMI  Y +NG    A+ L   M      PN  T  ++L+ C
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441

Query: 251 EGML---ENMLAHALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFERLE 304
             +         H  AIR   E+ +S++      Y     + W        AR  F+++ 
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPW--------ARRMFDQVC 493

Query: 305 -AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             K+ ++WT+MI+A + HG G +   LF  ML++G +PD IT+VGVLS CSHAG V +G+
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGK 553

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
           + ++ +   +   P   HY+C+ D+L RAG   EA   + +MP  E D +  G+LL ACR
Sbjct: 554 RYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPV-EPDAIAWGSLLSACR 612

Query: 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV-RKKMERRVKKVASF 482
           +H +  +A+   E+L+ + P++SGAY   ANV++A G W + A++ + + E+ V+K   F
Sbjct: 613 VHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGF 672

Query: 483 SQIEVKGKDHTLLA-----PMREMGYVV 505
           S   ++ K H   A     P R+  Y +
Sbjct: 673 SWTHIRSKIHVFGADDVVHPQRDAVYAM 700



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 168/372 (45%), Gaps = 48/372 (12%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
           L  A  LF  +P ++RN+   ++++  + K+GR+ +AR VF E+ E +  SWT ++ G  
Sbjct: 81  LRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLN 140

Query: 101 KARQVDEGRRL--------FDRMPLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTT 148
           +A +  E  +         F      L NV+S   V     +G   +  + KL + S   
Sbjct: 141 RAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVP 200

Query: 149 MCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           +   +     +    + A   F +MP + + +WNAM++     G M  A  LF  MP R+
Sbjct: 201 VANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRS 260

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCEGMLENMLA---H 260
           + +WNAMI  Y +NG +  A+KL + M  +S   P+E T TS+L++C  +    +    H
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 261 ALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLDVN---------------- 294
           A  +R      + +T      Y             D   + D+N                
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 295 --SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
             SAR  F  +  +DVV+WTAMI+ Y  +G   +   LF  M+  G +P+  T   VLS 
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 353 CSHAGLVEKGRK 364
           C+    ++ G++
Sbjct: 441 CASLACLDYGKQ 452



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 33/302 (10%)

Query: 162 AREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           AR  F ++P   +++  WN++++ +  +G +A A  +F  MP+R+  +W  M+    R G
Sbjct: 84  ARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG 143

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGF-------E 269
             G A+K L  M    F P + T T++L+SC       +    H+  ++LG         
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 270 QETSLTYKC----TCHYVF----------WDWGFQLDVNSARL-----AFERLEAKDVVS 310
              ++  KC    T   VF          W+    L+ +  R+      FE +  + +VS
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263

Query: 311 WTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           W AMI  Y+ +G   +  +LF+RML +S   PDE T   VLS C++ G V  G++    +
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            R       ++  + L     ++G V+ A R++ +    + + +   ALL      GD+ 
Sbjct: 324 LRTE-MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 430 MA 431
            A
Sbjct: 383 SA 384


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 211/389 (54%), Gaps = 38/389 (9%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +V+   ++I+ Y   R++   R++FD          S++ V             +V+SWT
Sbjct: 143 DVFVVNNMIALYSSFRELRSARKVFDE---------SYSLV-------------DVVSWT 180

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           T+ TG   +     AR+ F  MP K+ V+WNAMI+ Y  +  + +A +LF+ MP R+  +
Sbjct: 181 TLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAAS 240

Query: 208 WNAMIDRYARNGPEGAAMKL-LNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALA 263
           W+AM+  Y++ G    A+ L + ++   + +PNE    S +++C     + E    H+  
Sbjct: 241 WSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHS-- 298

Query: 264 IRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
               + +E  L    T   V  D +G    +  A   F  +  ++V SW +MI   + +G
Sbjct: 299 ----YIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNG 354

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
            G +   LF +M   G  P+ ITF+ +L+ CSH+GL+ +GR  F++M++ YG KP+ +HY
Sbjct: 355 CGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHY 414

Query: 383 SCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
            C+ D+L RAG VKEA+  V KMP  PH     + GAL+GACR+HG V + + +G+RLI+
Sbjct: 415 GCMVDLLGRAGLVKEALDFVEKMPMKPHSE---LWGALVGACRIHGQVELGEELGKRLID 471

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVR 469
           L+P   G Y L  N+ AA   WD+ A VR
Sbjct: 472 LEPHHGGRYALLCNIFAAAQRWDDVAMVR 500



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 29/250 (11%)

Query: 9   KVKEATKLFDE-MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           +++ A K+FDE  S  D VS  ++IT F  +  + +A  +F  MP   +N V+ +AMI G
Sbjct: 159 ELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMP--LKNTVSWNAMISG 216

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF------DRMPLKLKN 121
           Y  + R++EARK+FDE+ + +  SW++++SGY +    +E   LF      D+M   + N
Sbjct: 217 YAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKM---IPN 273

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             +  + V  CA    +  LE   W           +    +E  +++   ++     ++
Sbjct: 274 EAALVSAVSACAQ---LRALEEGRW-----------LHSYIKEKKLRI---NVTLGTVLL 316

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++  A+ +FNLM +RNV +WN+MI   A NG    A+ L   M      PN  
Sbjct: 317 DMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAI 376

Query: 242 TCTSILTSCE 251
           T  ++LT C 
Sbjct: 377 TFIALLTGCS 386



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 28/242 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           F  +G++ EA K+FD M   + VS  +MI+ +  +  + +A  LF  MP+  R+  + SA
Sbjct: 186 FSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPD--RDAASWSA 243

Query: 64  MIDGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMP-L 117
           M+ GY + G  +EA  +F E+  G     N  +  S +S   + R ++EGR L   +   
Sbjct: 244 MVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEK 303

Query: 118 KLKNVVSWTTVVL-----------GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166
           KL+  V+  TV+L                 L+++  V SW +M  GL  N   K A   F
Sbjct: 304 KLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALF 363

Query: 167 VQM----PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVWTWNAMIDRYAR 217
            +M    P+ + + + A++T    +G + +   LF++M Q       +  +  M+D   R
Sbjct: 364 WKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGR 423

Query: 218 NG 219
            G
Sbjct: 424 AG 425


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 260/503 (51%), Gaps = 37/503 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  D   A A+F  M    R++ + + M+  Y   GR++ A  +F+ + E ++
Sbjct: 387 SVLYMYGKCGDAETARAVFERM--QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI 444

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            SW ++I+GY +        + F RM        +  + T+V+  CA+  ++   + +  
Sbjct: 445 VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHS 504

Query: 147 TTMCTGLE--------------RNAMTKLAREYFVQ--MPNKDIVAWNAMITAYVDAGNM 190
             + TG+               ++   + AR    Q  + + +++++ A++  YV  G+ 
Sbjct: 505 YILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDT 564

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            QA E+F++M  R+V  W AMI  Y +NG    AM+L   M      PN  T  ++L++C
Sbjct: 565 KQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSAC 624

Query: 251 EGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL-EAK 306
             +         H  AIR   EQ  S++     + +   +     V  AR  F+++   K
Sbjct: 625 ASLAYLDYGKQIHCKAIRSLQEQSVSVS-----NAIITVYARSGSVPLARRVFDQICWRK 679

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           + ++WT+MI+A + HG G Q   LF  M++ G KPD IT+VGVLS C+HAG V+KG++ +
Sbjct: 680 ETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYY 739

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             M   +G  P+  HY+C+ D+  RAG + EA   + +MP    D VV G+LL ACR+  
Sbjct: 740 EQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPV-APDTVVWGSLLAACRVRK 798

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KMERRVKKVASFSQI 485
           +  +A+    +L+ + P +SGAY   ANV++A G W++ A++ K + ++ VKK   FS  
Sbjct: 799 NADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWT 858

Query: 486 EVKGKDHT-----LLAPMREMGY 503
            V+GK H      +L P R+  Y
Sbjct: 859 HVRGKVHVFGADDVLHPQRDSIY 881



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 53/413 (12%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +A  LF  +P ++RN    ++++  Y K+GR+ +A  VF E+ + +  SWT +I G  ++
Sbjct: 266 EARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRS 325

Query: 103 RQVDEGRRLFDRM--------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
            +  +  + F  M           L NV+S    +  C     +    V    + C  + 
Sbjct: 326 GRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVA 385

Query: 155 RNAM--------TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            + +         + AR  F +M  + + +WN M++ Y   G M  A  +F  M +R++ 
Sbjct: 386 NSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIV 445

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLA-----H 260
           +WN +I  Y +NG +G A+K  + M  +  M P+  T TS+L++C  +   ML      H
Sbjct: 446 SWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANL--RMLKMGKQMH 503

Query: 261 ALAIRLGFEQETSLTYKCTCHYV----------FWDWGFQLDVN---------------- 294
           +  +R G    + +       Y             D     D+N                
Sbjct: 504 SYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGD 563

Query: 295 --SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              AR  F+ +  +DV++WTAMI+ Y  +G   +   LF  M+  G +P+  T   VLS 
Sbjct: 564 TKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSA 623

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           C+    ++ G++      R+   +      + +  +  R+G V  A RV  ++
Sbjct: 624 CASLAYLDYGKQIHCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQI 675



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 35/255 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----PESQRNIVAESA 63
           G  K+A ++FD M+  D ++  +MI  + +N    +A  LFR+M    PE   + +A  A
Sbjct: 562 GDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLA--A 619

Query: 64  MIDGYVKAGRVDEAR----KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           ++        +D  +    K    + E +V    ++I+ Y ++  V   RR+FD++  + 
Sbjct: 620 VLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWR- 678

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL--------------AREY 165
           K  ++WT++++  A +GL  +  V+    +  G++ + +T +               + Y
Sbjct: 679 KETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRY 738

Query: 166 FVQMPNKDIVA-----WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYAR 217
           + QM N+  +      +  M+  +  AG + +A E    MP   +   W +++   R  +
Sbjct: 739 YEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRK 798

Query: 218 NG--PEGAAMKLLNL 230
           N    E AA KLL++
Sbjct: 799 NADLAELAAGKLLSI 813


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 243/479 (50%), Gaps = 48/479 (10%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           +L K  A    +  SQ N +  + M+D       VD A  +F ++   NV+S+ ++I  Y
Sbjct: 22  ELKKIHAHIVKLSLSQSNFLV-TKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTY 80

Query: 100 FKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAK-------LEVISWTT 148
               +      +F++M L  K+      ++  V+  CA  GL+ +         V  +  
Sbjct: 81  THNHKHPLAITVFNQM-LTTKSASPDKFTFPFVIKSCA--GLLCRRLGQQVHAHVCKFGP 137

Query: 149 MCTGLERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
               +  NA+  +         A + + +M  +D V+WN++I+ +V  G M  A E+F+ 
Sbjct: 138 KTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDE 197

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-N 256
           MP R + +W  MI+ YAR G    A+ +   M      P+E +  S+L +C   G LE  
Sbjct: 198 MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG 257

Query: 257 MLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
              H  + + GF +          +  KC C  +   WG           F ++  KDV+
Sbjct: 258 KWIHKYSEKSGFLKNAGVFNALVEMYAKCGC--IDEAWGL----------FNQMIEKDVI 305

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW+ MI   +NHG G+   R+F  M K+G  P+ +TFVGVLS C+HAGL  +G + F++M
Sbjct: 306 SWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVM 365

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              Y  +P+ EHY CL D+L R+GQV++A+  + KM P + D     +LL +CR+H ++ 
Sbjct: 366 RVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKM-PMQPDSRTWNSLLSSCRIHHNLE 424

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           +A    E+L++L+P  SG YVL AN++A   +W+  + VRK +  +R+KK    S IEV
Sbjct: 425 IAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEV 483



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 121/271 (44%), Gaps = 36/271 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A ++++EM++ D VS  S+I+  +R   +  A  +F  MP   R IV+ + MI+G
Sbjct: 155 GDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMP--CRTIVSWTTMING 212

Query: 68  YVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRL--FDRMPLKLKN 121
           Y + G   +A  +F E+     E +  S  S++    +   ++ G+ +  +      LKN
Sbjct: 213 YARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKN 272

Query: 122 VVSWTTVV-----LGCAH------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
              +  +V      GC        N +I K +VISW+TM  GL  +     A   F  M 
Sbjct: 273 AGVFNALVEMYAKCGCIDEAWGLFNQMIEK-DVISWSTMIGGLANHGKGYAAIRVFEDMQ 331

Query: 171 NKDI----VAWNAMITAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNG 219
              +    V +  +++A   AG   +    F++M       PQ  +  +  ++D   R+G
Sbjct: 332 KAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQ--IEHYGCLVDLLGRSG 389

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               A   L+ + +    P+  T  S+L+SC
Sbjct: 390 QVEQA---LDTILKMPMQPDSRTWNSLLSSC 417


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 233/464 (50%), Gaps = 37/464 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD-------- 113
           +++I  YV  G  + AR++FDE+ + NV S+ ++I G+ K   +     LF         
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226

Query: 114 ----RMPLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREY 165
                M   L          LG + +  I K      +I +  +     +    KLAR+ 
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 286

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F     KD V+WN +I  Y   G +  A +LFN +P R++ +WN++I  YA+NG      
Sbjct: 287 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 346

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRL-----GFEQETSLTYK 277
            L   MF     P++ T  +++++   M    +    H LA+++      F     +   
Sbjct: 347 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 406

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C C            +  A + F ++  KDV +WT MI  ++ HG G +   LF+ M ++
Sbjct: 407 CKCG----------SIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QA 455

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
            TKP+++TFV VL+ CSH+GLV++G K F+ M + Y  +P  EHY CL D+L R+G++ +
Sbjct: 456 ETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLD 515

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ V+ KM P E    + GA+L ACR+H ++ +A+     L++L+P   G Y+L +NV+A
Sbjct: 516 AIGVIEKM-PMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYA 574

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMRE 500
             G W     +R+ M  R VKK+A  S + V G  H   A  ++
Sbjct: 575 TCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQ 618



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 58/293 (19%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------------ 54
           A +LFDEMS  + VS  +MI  F +  ++     LF  M      P+             
Sbjct: 182 ARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQ 241

Query: 55  -------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
                                N++  +A++D YVK   +  ARKVFD   E +  SW ++
Sbjct: 242 LGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTI 301

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155
           I+GY K  +++    LF+++P   +++VSW +++ G A NG    ++ +        ++ 
Sbjct: 302 IAGYAKVGELELACDLFNQIP--TRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKP 359

Query: 156 NAMT-----------------KLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELF 197
           + +T                 +      V+M  K +  + +A+I  Y   G++ +A  +F
Sbjct: 360 DKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIF 419

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           N +P+++V TW  MI  +A +G    A++L ++M Q+   PN+ T  S+L +C
Sbjct: 420 NQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAAC 471



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 24/225 (10%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--ESAMIDGYVKA 71
           T++F E  +PD V+  ++I+       L +   +     +    I A   SA+ID Y K 
Sbjct: 350 TRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKC 409

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVL 130
           G ++ A  +F++I E +V +WT++I+G+      ++   LF  M  + K N V++ +V+ 
Sbjct: 410 GSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLA 469

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            C+H+GL+ +           GL+    + + + Y ++     +  +  ++     +G +
Sbjct: 470 ACSHSGLVDE-----------GLK--IFSSMKKRYSIE---PGVEHYGCLVDLLCRSGRL 513

Query: 191 AQASELFNLM---PQRNVWTWNAMIDRYARNG--PEGAAMKLLNL 230
             A  +   M   P R++W       R  RN    E A M+LL L
Sbjct: 514 LDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKL 558



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 12/245 (4%)

Query: 189 NMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           N+  A  LFN   P  N++ +N MI  +  +  +  A  +   M Q+   P+  T   +L
Sbjct: 80  NLELAILLFNHFTPYPNLYIFNTMILGFPFSNEK--AFTIYRSMLQNGTYPDRQTFLYLL 137

Query: 248 TSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            + + + E    H  A+  G   +E  L       YV  D G       AR  F+ +  +
Sbjct: 138 QTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYV--DNGC---FECARQLFDEMSDR 192

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +VVS+  MIL ++  G+   +  LF  M   G +PD+ T +G+L  C   G  + G+   
Sbjct: 193 NVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVH 252

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             + ++ G       Y+ L D+  +  ++K A +V     P E+D V    ++      G
Sbjct: 253 AQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVFDG--PMEKDTVSWNTIIAGYAKVG 309

Query: 427 DVRMA 431
           ++ +A
Sbjct: 310 ELELA 314


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 254/494 (51%), Gaps = 34/494 (6%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN 57
           S F  +G    A +LF  M Q    PD   C+S +   + +  L +    +        +
Sbjct: 424 SAFAQSGSTGRAVELFQRMLQEGLRPDKF-CSSSVLSIIDSLSLGRLIHCYILKIGLFTD 482

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I   S++   Y K G ++E+  VF+++ + +  SW S+I+G+ +    ++  +LF  M L
Sbjct: 483 ISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLL 542

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM-PNKDIVA 176
           +       T          L A L      T C+ L      K    Y ++    K+++ 
Sbjct: 543 EEIRPDQMT----------LTAAL------TACSALHSLEKGKEVHGYALRARVGKEVLV 586

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             A++  Y   G +  A  +F+++PQ++ ++ ++++  YA+NG    A+ L + +  +  
Sbjct: 587 GGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADL 646

Query: 237 MPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             +  T +S++ +   +L ++      HA   ++G   E S+       Y          
Sbjct: 647 WIDSFTVSSVIGAV-AILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCG-----S 700

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++     FE++E  D++SWTAMI++Y+ HG G +  +++  M K GTKPD +TFVGVLS 
Sbjct: 701 IDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSA 760

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH G+VE+G    N M++ YG +P   HY+C+ D+L R+G++KEA R ++ MP  E D 
Sbjct: 761 CSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPI-EPDA 819

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++ G LL AC++HGD+ +     +R+IEL+P  +GAYV  +N+ A  G W++  ++R  M
Sbjct: 820 LLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLM 879

Query: 473 E-RRVKKVASFSQI 485
           E   VKK   +S +
Sbjct: 880 EGTGVKKEPGWSSV 893



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 163/378 (43%), Gaps = 47/378 (12%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------- 136
           +V+  T++I  Y K R +D+  + F RMP++  NVVSWTT++ G                
Sbjct: 282 DVFVGTAIIDLYAKCRDMDQAVKEFLRMPIR--NVVSWTTIISGFVQKDDSISAFHFFKE 339

Query: 137 ---LIAKLEVISWTTMCTGLERNAMTKLAREY----FVQMPNKDIVAWNAMITAYVDAGN 189
              +  K+   + T++ T      M K A +     F      D    +A+I  Y   G 
Sbjct: 340 MRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGV 399

Query: 190 MAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           +  +  +F  M   +N+  W  MI  +A++G  G A++L   M Q    P++   +S+L+
Sbjct: 400 VDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLS 459

Query: 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
             + +    L H   +++G   + S+        +F  +     +  +   FE++  KD 
Sbjct: 460 IIDSLSLGRLIHCYILKIGLFTDISVGSS-----LFTMYSKCGSLEESYTVFEQMPDKDN 514

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSW +MI  +S H H  Q  +LF  ML    +PD++T    L+ CS    +EKG++    
Sbjct: 515 VSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEV--- 571

Query: 369 MSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG---- 420
               Y  + R          L ++  + G +  A RV   +P  ++D     +L+     
Sbjct: 572 --HGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLP--QKDQFSCSSLVSGYAQ 627

Query: 421 ------ACRLHGDVRMAD 432
                 A  L  ++RMAD
Sbjct: 628 NGYIEDALLLFHEIRMAD 645



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 147/377 (38%), Gaps = 58/377 (15%)

Query: 68  YVKAGR-------VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           Y K+GR       +  A  +   I + N +   SL+  Y K+  +    RLFD+ P    
Sbjct: 53  YTKSGRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHP-- 110

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMC----TGLERN---------AMTKLAREYFV 167
           NV+SW  ++ GC  N         SW   C    +G + N         A T L    + 
Sbjct: 111 NVISWNILISGCNQNFSFED----SWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYG 166

Query: 168 QMPNKDIVAWNAMITAYVDAG---------NMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           ++     +        YV AG         +   A  +F  +   NV  WNA+I    +N
Sbjct: 167 ELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKN 226

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL---AIRLGFEQET--- 272
                A+ L   M    FMPN  T +SILT+C  + E      +    I+ G  ++    
Sbjct: 227 RENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVG 286

Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                L  KC             D++ A   F R+  ++VVSWT +I  +         F
Sbjct: 287 TAIIDLYAKCR------------DMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAF 334

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
             F  M K G K +  T   VL+ C+   ++++  +  + + +  GF   +   S L ++
Sbjct: 335 HFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKT-GFYLDSNVSSALINM 393

Query: 389 LRRAGQVKEAMRVVSKM 405
             + G V  + RV  +M
Sbjct: 394 YSKIGVVDLSERVFREM 410



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 169/399 (42%), Gaps = 53/399 (13%)

Query: 66  DGYVKAGRVD---------EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +GYV+AG +D         +A +VF ++   NV  W ++ISG  K R+      LF +M 
Sbjct: 181 NGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMC 240

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLE----VISWTTMCTGLERNAMTKLAREYFVQMP 170
            +  + N  ++++++  CA    + +LE    V  W   C   E                
Sbjct: 241 CRFFMPNSFTFSSILTACAA---LEELEFGRGVQGWVIKCGAGE---------------- 281

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D+    A+I  Y    +M QA + F  MP RNV +W  +I  + +     +A      
Sbjct: 282 --DVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKE 339

Query: 231 MFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +     N  T TS+LT+C     + E +  H+   + GF  +++++      Y     
Sbjct: 340 MRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYS--KI 397

Query: 288 GFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           G    V+ +   F  +E+ K++  W  MI A++  G   +   LF RML+ G +PD+   
Sbjct: 398 GV---VDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCS 454

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             VLS      L   GR     + +  G        S L  +  + G ++E+  V  +MP
Sbjct: 455 SSVLSIIDSLSL---GRLIHCYILKI-GLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP 510

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQP 443
             ++D+V   +++     H     A  +   ++  E++P
Sbjct: 511 --DKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRP 547


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 234/481 (48%), Gaps = 80/481 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G    A +L  ++ +PD V+  +++  FLR   LP A  LF  MPE  R++V  ++M+ G
Sbjct: 135 GSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPE--RDLVTYNSMLSG 192

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G +  AR++FD + E +V +W S+++GY +   ++  +RLFD MP++         
Sbjct: 193 YAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVR--------- 243

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                         +V+SW +M  G  +    ++ R  F  MP +  V+WN ++  Y   
Sbjct: 244 --------------DVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKV 289

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
            +  +   LF+ M               A  G +                PNE T  S+L
Sbjct: 290 KDWHECLNLFDAM--------------MAVGGSK----------------PNEKTFVSVL 319

Query: 248 TSC-------EGMLENMLAHA-----LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           T+C        G   + L H      L   L      ++  KC              + +
Sbjct: 320 TACGHLGDLERGRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGV------------MGT 367

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+  F+ +  + V SW +MI+ Y  HG+  +   LF  M K+G +P+E TF+ +LS C+H
Sbjct: 368 AKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAH 427

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            GLV +G   F+ M R Y  +P+AEH+ C+ D+L RAG ++++  +++ +   +    + 
Sbjct: 428 GGLVLEGWWCFDRMVRFYNIEPKAEHFGCMMDLLGRAGLLRDSENLINNLQA-KVSPALW 486

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           GAL+ A R     ++ ++IG +LIE++P+   +YVL +N++A  G WD+  +VRK M+ +
Sbjct: 487 GALISASRTQDSSKLGEFIGTKLIEMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVMKEK 546

Query: 476 V 476
           V
Sbjct: 547 V 547



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 20/252 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +  A +LFD M + D V+  SM+  + +  D+  A+ LF  MP   R++V+ 
Sbjct: 191 SGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMP--VRDVVSW 248

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL---K 118
           ++M+DGY + G ++  R VFD +   +  SW  +++ Y K +   E   LFD M      
Sbjct: 249 NSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGS 308

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             N  ++ +V+  C H G    LE   W           +  L  E + ++   D++   
Sbjct: 309 KPNEKTFVSVLTACGHLG---DLERGRW-----------VHHLVHESWERLL-PDVLLLT 353

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           AM+T Y   G M  A E+F+LM +R+V +WN+MI  Y  +G    A++L   M ++   P
Sbjct: 354 AMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQP 413

Query: 239 NETTCTSILTSC 250
           NETT   IL+SC
Sbjct: 414 NETTFICILSSC 425


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 232/442 (52%), Gaps = 32/442 (7%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR------------MPLKLKN 121
           +D A ++F +I   N++ + ++I G+  ++  D+    + +             P  +K+
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 122 VVSWTTVVLGCAHNGLIAK----LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
                 + +G   +G I K     +V    ++         T+ A   F +M   D+V+W
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            +MI  +   G++  A +LF+ MP++N+ TW+ MI  YA+N     A++L  ++      
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWD-WGFQL 291
            NET   S+++SC        AH  A+ LG     +  +  +T          D +    
Sbjct: 249 ANETVMVSVISSC--------AHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCG 300

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ++ A   FE L  +D +SWTA+I   + HG+  +  + FA M+++G  P +ITF  VLS
Sbjct: 301 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSH GLVE+G + F  M R +  +PR EHY C+ D+L RAG+++EA R V KMP  + +
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPV-KPN 419

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V GALLGACR+H +  + + +G+ LI+L P  SG YVL +N++A   EW++  ++R+ 
Sbjct: 420 APVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQM 479

Query: 472 MERR-VKKVASFSQIEVKGKDH 492
           M+ + +KK    S IE+ G+ H
Sbjct: 480 MKAKGLKKPPGHSLIELDGRVH 501



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 112/221 (50%), Gaps = 22/221 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           ++++  +++++  Y   G  + A  +F  +Y  +V SWTS+I G+ K   V+  R+LFD+
Sbjct: 151 EKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQ 210

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNA 157
           MP   KN+V+W+T++ G A N    K                   ++S  + C  L    
Sbjct: 211 MP--EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALE 268

Query: 158 MTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           + + A +Y V+     +++   A++  Y   G++ +A  +F  +P+R+  +W A+I   A
Sbjct: 269 LGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLA 328

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            +G    ++K    M ++   P + T T++L++C   G++E
Sbjct: 329 MHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVE 369



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 63/262 (24%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR-------------- 49
           F   G V+ A KLFD+M + + V+ ++MI+ + +N+   KA  LF+              
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254

Query: 50  -----------AMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                      A+   +R            N++  +A++D Y + G +D+A  VF+++ E
Sbjct: 255 VSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPE 314

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            +  SWT+LI+G       +   + F  M    L  ++ +++T V+  C+H GL+ +   
Sbjct: 315 RDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRD-ITFTAVLSACSHGGLVERGFQ 373

Query: 144 I---------------SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDA 187
           I                +  M   L R    + A  + ++MP K +   W A++ A    
Sbjct: 374 IFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIH 433

Query: 188 GNMAQASE-----LFNLMPQRN 204
            N A+  E     L  L+PQ +
Sbjct: 434 KN-AEIGERVGKILIQLLPQHS 454


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 235/439 (53%), Gaps = 35/439 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A +A++D Y K G++D ARK+FDE+ + +  SWT+LI GY ++  +D   +LFD+M 
Sbjct: 296 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMI 355

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            K  +  ++ T++      G            MC+          AR+ F +MP + +V+
Sbjct: 356 EK--DSAAFNTMIDAYVKLG-----------DMCS----------ARKLFDEMPERSVVS 392

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W  MI  Y   GN+  A  LF+ MP++N+++WNAMI  Y +N     A+KL + M  +  
Sbjct: 393 WTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTS 452

Query: 237 M-PNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           + P+E T  S+L +    G L+     H    R   ++ T++       Y         +
Sbjct: 453 LEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG-----E 507

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  +R  F+ +  K+  SW A+I A++ +G   +   LF  M   G  P+EIT +GVLS 
Sbjct: 508 IVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSA 567

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+H+GLVE+G++ F  M   +G  P+ EHY C+ D+L RAG ++EA +++  M P+E + 
Sbjct: 568 CNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM-PYEANG 625

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++L + L AC    DV  A+ + +  I+++  + G Y++  N++A    W E  +V+  M
Sbjct: 626 IILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLM 685

Query: 473 ERR-VKKVASFSQIEVKGK 490
            R  VKK A  S IEV  +
Sbjct: 686 RRNGVKKEAGCSAIEVDSR 704



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 25/269 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+  A KLFDEM     VS  ++I  ++R+ D+  A  LF  M E  ++  A + MID 
Sbjct: 311 GKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIE--KDSAAFNTMIDA 368

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YVK G +  ARK+FDE+ E +V SWT +I GY     +D  R LFD MP   KN+ SW  
Sbjct: 369 YVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMP--EKNLFSWNA 426

Query: 128 VVLGCAHNGL-IAKLEVISWTTMCTGLERNAMTKLA-REYFVQMPNKDIVAW-------- 177
           ++ G   N      L++       T LE + +T ++       +   D+  W        
Sbjct: 427 MISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 486

Query: 178 ---------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                     A+I  Y   G + ++  +F+ MP++   +WNA+I+ +A NG    A+ L 
Sbjct: 487 KLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLF 546

Query: 229 NLMFQSRFMPNETTCTSILTSCE--GMLE 255
             M    FMPNE T   +L++C   G++E
Sbjct: 547 MEMNHKGFMPNEITMIGVLSACNHSGLVE 575



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 18/248 (7%)

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK--CTCHYV-----FW 285
           QS + P E  C S+L   +     +  HA  +R   E   +L  K   TC  +      +
Sbjct: 145 QSLWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLY 204

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK--PDE 343
           D      V++ R+   R    D     +MI AY       + F L+ R L+  T   PD 
Sbjct: 205 D-PLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALY-RDLRRNTSFTPDS 262

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            TF  +   C+    + +G++  + +  A GF       + L D+  + G++  A ++  
Sbjct: 263 FTFSVLAKSCALNMAIWEGQEIHSHVV-AVGFCLDLYAATALVDMYAKFGKMDCARKLFD 321

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG----AYVLSANVHAAR 459
           +M   +R  V   AL+G     GD+  A  + +++IE   ++      AYV   ++ +AR
Sbjct: 322 EMI--DRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSAR 379

Query: 460 GEWDEFAQ 467
             +DE  +
Sbjct: 380 KLFDEMPE 387


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/526 (29%), Positives = 268/526 (50%), Gaps = 50/526 (9%)

Query: 8   GKVKEATKLFDEMS-----QPDPVSCASMI--TVFLRNHDLPKAEALFRAMPESQRNIVA 60
           GK K A ++F  M+     +PD ++  +++     L  H L K    F    E  +N+  
Sbjct: 207 GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFV 266

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKL 119
            + ++D Y K G +DEA  VF  +   +V SW ++++GY +  + ++  RLF++M   K+
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKI 326

Query: 120 K-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA---------------- 162
           K +VV+W+  + G A  GL  +   +    + +G++ N +T ++                
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 163 -REYFVQMP--------NKDIVAWNAMITAYVDAGNMAQASELFN-LMP-QRNVWTWNAM 211
              Y ++ P          + +  N +I  Y     +  A  +F+ L P +R+V TW  M
Sbjct: 387 IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVM 446

Query: 212 IDRYARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLA---HALAIRL 266
           I  Y+++G    A++LL+ MF+   +  PN  T +  L +C  +    +    HA A+R 
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR- 505

Query: 267 GFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             +Q     +   C   ++   G    ++ ARL F+ + AK+ V+WT+++  Y  HG+G 
Sbjct: 506 -NQQNAVPLFVSNCLIDMYAKCG---SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGE 561

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   +F  M + G K D +T + VL  CSH+G++++G + FN M   +G  P  EHY+CL
Sbjct: 562 EALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACL 621

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++  A+R++ +M P E   VV  A L  CR+HG V + +Y  E++ EL  + 
Sbjct: 622 VDLLGRAGRLNAALRLIEEM-PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE-VKG 489
            G+Y L +N++A  G W +  ++R  M  + VKK    S +E +KG
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKG 726



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 170/417 (40%), Gaps = 66/417 (15%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A++  Y +   + +ARKVFDE+   +V SW S+I  Y K  +      +F RM 
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220

Query: 117 LKL---KNVVSWTTVVLGCAHNG---LIAKLEVISWTT-----MCTG------LERNAMT 159
            +     + ++   V+  CA  G   L  +L   + T+     M  G        +  M 
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRY 215
             A   F  M  KD+V+WNAM+  Y   G    A  LF  M +     +V TW+A I  Y
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE--- 269
           A+ G    A+ +   M  S   PNE T  S+L+ C     ++     H  AI+   +   
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400

Query: 270 -----------QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMIL 316
                      Q   +  KC              V++AR  F+ L  K  DVV+WT MI 
Sbjct: 401 NGHGDENMVINQLIDMYAKCK------------KVDTARAMFDSLSPKERDVVTWTVMIG 448

Query: 317 AYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
            YS HG   +   L + M +    T+P+  T    L  C+    +  G++       AY 
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQI-----HAYA 503

Query: 375 FKPRAEHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + +         +CL D+  + G + +A  V   M    ++ V   +L+    +HG
Sbjct: 504 LRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM--MAKNEVTWTSLMTGYGMHG 558


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 229/464 (49%), Gaps = 50/464 (10%)

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTV 128
           K   +  AR +FD I   ++  W ++I  Y + +   +G  LF  +  + L +  +   V
Sbjct: 62  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCV 121

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTK--------------LAREYFVQMPNKDI 174
           + GCA  G++ + + I    +  G   +   +               AR+ F  M +KD+
Sbjct: 122 IKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDV 181

Query: 175 V-----------AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           V           +WNAMI  Y+ +G+   A ELF  MP  ++ TWN MI  Y  NG    
Sbjct: 182 VLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMD 241

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQE----TSLT- 275
           A+K+  +M +    P+  T  S+L++  G+    +    H+   + GFE +    TSL  
Sbjct: 242 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 301

Query: 276 --YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
              KC C            + SA   F  ++ K V  WTA+I+    HG       LF  
Sbjct: 302 MYAKCGC------------IESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLE 349

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M K+G KP+ I F+GVL+ C+HAGLV+ GR+ F++M   Y  +P  EHY CL DIL RAG
Sbjct: 350 MCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAG 409

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EA   +  MP    + V+  +LLG  R HG + + +Y  +R+IE+ P + G Y+L +
Sbjct: 410 HLEEAKNTIENMPI-SPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLS 468

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           N++AA G W++ + VR+ M +R  +K    S +E KG  H  + 
Sbjct: 469 NMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIV 512



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 31/223 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFD-----------EIYEGNVYSWTSLISGYFKARQV 105
           ++  + ++++ Y K G +D ARKVFD            + +GN+ SW ++I+GY K+   
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDF 208

Query: 106 DEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LIAKL-------EVISWTT 148
           D    LF +MP  + ++V+W  ++ G   NG          ++ KL        ++S  +
Sbjct: 209 DSALELFYQMP--IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLS 266

Query: 149 MCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
             +GL      +    Y  +   + D +   ++I  Y   G +  A  +F  + ++ V  
Sbjct: 267 AVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGH 326

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           W A+I     +G    A+ L   M ++   PN      +L +C
Sbjct: 327 WTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNAC 369


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/407 (35%), Positives = 217/407 (53%), Gaps = 26/407 (6%)

Query: 121 NVVSWTTVVLGCA-----------HNGLIA---KLEVISWTTMCTGLERNAMTKLAREYF 166
           N  + +TVV  CA           HN +I    + +V+  T +     R    + A   F
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +M  +    WNAMIT +    +M +A +LF  M +R+V +W A+I  YA+NG    ++ 
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYV 283
           + N M ++    +     S+L++C  +    L    HA  ++ GF  +  +       Y 
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMY- 187

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    +  A   F+++  ++ VSW ++I   + HG G     LF +ML++G KP+E
Sbjct: 188 ----AKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           I+FVGVLS CSH GLV +GR  FNLM++ YG  P   HY+C+ D+L RAG + EA   ++
Sbjct: 244 ISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFIN 303

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP  E D  V GALLGACR+HG+  +A  I E L+ ++   +G YVL +N++AA G+WD
Sbjct: 304 GMPV-EPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWD 362

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           + A+VRK M +R V K   +S IEVK   H  +A   E  +  LKE+
Sbjct: 363 DAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAG--ETSHPQLKEI 407



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 20/214 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++V ++A++  Y + G +++A  VFD++ E +  +W ++I+G+ + R + +  +LF  
Sbjct: 42  ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYE 101

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN--------------AMTK 160
           M    ++VVSWT V+ G A NG   +   +      TG++ +              A  +
Sbjct: 102 MS--ERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALE 159

Query: 161 LAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           L R++   +       DIV  +A++  Y  +G+M  A ++F+ MPQRN  +WN++I   A
Sbjct: 160 LGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCA 219

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++G    A+ L   M Q+   PNE +   +L++C
Sbjct: 220 QHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSAC 253



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 118/264 (44%), Gaps = 63/264 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +++A  +FD+MS+    +  +MIT   +N D+ KA  LF  M  S+R++V+ +A+I G
Sbjct: 59  GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEM--SERDVVSWTAVIAG 116

Query: 68  YVKAGRVDEARKVFDEIYE----------GNVYS-------------------------- 91
           Y + G  DE+  VF+++ +          G+V S                          
Sbjct: 117 YAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 92  ---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------------ 136
               ++L+  Y K+  +++  ++FD+MP   +N VSW +++ GCA +G            
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVFDKMP--QRNEVSWNSIITGCAQHGRGNDAVLLFEQM 234

Query: 137 LIAKLEV--ISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGN 189
           L A ++   IS+  + +      +    R YF  M        D+  +  MI     AG 
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGC 294

Query: 190 MAQASELFNLMP-QRNVWTWNAMI 212
           + +A    N MP + +V  W A++
Sbjct: 295 LDEAENFINGMPVEPDVSVWGALL 318


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 234/444 (52%), Gaps = 44/444 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL-- 119
           ++M+  Y + G    ARKVFDEI E ++ SW SL+SGY K     E   +F R+  +   
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF 215

Query: 120 -KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW- 177
             + +S  +V+  C   G +  LE+  W                 E FV      + ++ 
Sbjct: 216 EPDEMSLVSVLGAC---GELGDLELGRWV----------------EGFVVERGMKVNSYI 256

Query: 178 -NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I+ Y   G +  +  +F+ MP R+  TWNA I  YA+NG    A+ L + M ++  
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD---- 292
            PN+ T T++L++C        A   A+ LG + +   T++   H +F      +D    
Sbjct: 317 DPNKVTLTAVLSAC--------ASIGALDLGKQMDEYATHRGLQHDIFVATAL-IDMYAK 367

Query: 293 ---VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFV 347
              + SA+  F  +  K+  SW AMI A ++HG   +   LF RM   G   +P++ITFV
Sbjct: 368 CGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFV 427

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +LS C HAGLV++G + F++MS  +G  P+ EHYSC+ D+L RAG + EA  V+ KM P
Sbjct: 428 SLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKM-P 486

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + D+V LGAL  AC+   +V + + + + L+EL PS+SG Y++S+ ++     WD+ A+
Sbjct: 487 EKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAAR 546

Query: 468 VRKKM-ERRVKKVASFSQIEVKGK 490
           +R  M E  V K    S IEV  +
Sbjct: 547 MRALMRENGVTKTPGCSWIEVGNQ 570



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 160/398 (40%), Gaps = 69/398 (17%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T  F C G+   A K+FDE+++ D VS  S+++ + +     +A  +F  + E       
Sbjct: 160 TMYFRC-GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218

Query: 61  ESAMID--------GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E +++         G ++ GR  E   V +   + N Y  ++LIS Y K  ++   RR+F
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGF-VVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLI-----------------AKLEVISWTTMCTGLER 155
           D MP   ++ ++W   +   A NG+                   K+ + +  + C  +  
Sbjct: 278 DGMP--SRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGA 335

Query: 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
             + K   EY        DI    A+I  Y   G++  A  +FN MP++N  +WNAMI  
Sbjct: 336 LDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISA 395

Query: 215 YARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET 272
            A +G    A+ L   M        PN+ T  S+L++C                      
Sbjct: 396 LASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC---------------------- 433

Query: 273 SLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                   H    D G++L D+ S            +  ++ M+   S  GH ++ + + 
Sbjct: 434 -------VHAGLVDEGYRLFDMMSTLFGL----VPKIEHYSCMVDLLSRAGHLYEAWDVI 482

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            +M +   KPD +T   + S C     V+ G +   ++
Sbjct: 483 EKMPE---KPDNVTLGALHSACQRKKNVDIGERVIQML 517


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 263/520 (50%), Gaps = 44/520 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G ++ A K+FD M   + V+   MIT F +      A  LF  M  S    V +   + 
Sbjct: 92  NGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLS--GYVPDRFTLS 149

Query: 67  GYVKA----GRVDEARK----VFDEIYEGNVYSWTSLISGYFKA---RQVDEGRRLFDRM 115
           G V A    G +   R+    V     + +V    SL+  Y K      VD+ R++FDRM
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM 209

Query: 116 PLKLKNVVSWTTVVLG------CAHNGLIAKLEVI------------SWTTMCTGLERNA 157
           P+   NV+SWT ++ G      C    +   LE++            S    C  L    
Sbjct: 210 PVH--NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIW 267

Query: 158 MTKLAREYFVQMPNKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           + +      V+M    I    N++I+ Y   GNM  A + F+++ ++N+ ++N +++ YA
Sbjct: 268 LGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETS 273
           ++     A +L N +  +    N  T  S+L+   S   + +    H+  ++ GF+    
Sbjct: 328 KSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLH 387

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +     C+ +   +    ++ +A   F  +   +V+SWT+MI  ++ HG   +    F +
Sbjct: 388 I-----CNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHK 442

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML++G  P+E+T++ VLS CSH GL+ +G K F  M   +G  PR EHY+C+ D+L R+G
Sbjct: 443 MLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSG 502

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EAM +V+ M P + D +VL   LGACR+HG++ +  +  E ++E  P    AY+L +
Sbjct: 503 HLEEAMELVNSM-PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLS 561

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           N+HA+ G+W+E A++RKKM ER + K A  S IEV+ K H
Sbjct: 562 NLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVH 601



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENML 258
           +R++ +W+A+I  YA N     A+     M +  F PNE   T +  +C   E +    +
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
                ++ G+  E+ +   C    +F       D+ SA   F+R+  ++VV+WT MI  +
Sbjct: 64  IFGFLLKTGY-FESDVCVGCALIDMFVKG--NGDLESAYKVFDRMPDRNVVTWTLMITRF 120

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA------ 372
              G       LF  M+ SG  PD  T  GV+S C+  GL+  GR+   L+ ++      
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180

Query: 373 -YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
             G      +  C+AD     G V +A +V  +MP H
Sbjct: 181 CVGCSLVDMYAKCVAD-----GSVDDARKVFDRMPVH 212



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 148/359 (41%), Gaps = 67/359 (18%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA----RQVDEGR 109
           ++R++V+ SA+I  Y    +  EA   F ++ E   Y      +G F+A      +  G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            +F  +   LK     + V +GCA   +  K               N   + A + F +M
Sbjct: 63  IIFGFL---LKTGYFESDVCVGCALIDMFVK--------------GNGDLESAYKVFDRM 105

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P++++V W  MIT +   G    A +LF              +D                
Sbjct: 106 PDRNVVTWTLMITRFQQLGFSRDAVDLF--------------LD---------------- 135

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
            M  S ++P+  T + ++++C  M    L    H L ++ G + +  +   C+   ++  
Sbjct: 136 -MVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV--GCSLVDMYAK 192

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAY-SNHGHGFQVFRLFARMLKSGTKPDEIT 345
                 V+ AR  F+R+   +V+SWTA+I  Y  + G   +   LF  M++   KP+  T
Sbjct: 193 CVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFT 252

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMR 400
           F  VL  C++   +  G + + L+      K R    +C+ + L     R G ++ A +
Sbjct: 253 FSSVLKACANLSDIWLGEQVYALV-----VKMRLASINCVGNSLISMYSRCGNMENARK 306


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 231/443 (52%), Gaps = 39/443 (8%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-P 116
           +   +A+I  Y   G++  A+K+FD + + ++ SW +LI GY +  +  E  RLFD M  
Sbjct: 59  LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 118

Query: 117 LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
             +K + V+   ++L C+H G         W         ++M K  +E  +++   D+ 
Sbjct: 119 ANIKADAVTMVKIILACSHLG--------DWEF------ADSMVKYIKENNLEI---DVY 161

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N +I  Y   GN+  A +LF+ MP+R+V +W +MI  Y++      A+KL   M  ++
Sbjct: 162 LGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK 221

Query: 236 FMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQE-----TSLTYKCTCHYVFWDW 287
             P++ T  S+L++C   G L+   A H    R G + +     + +   C C  V    
Sbjct: 222 VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMV---- 277

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                   A   F R++ KD VSWT++I   + +G       LF++ML+ G +P   TFV
Sbjct: 278 ------EKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFV 331

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           G+L  C+HAGLV KG + F  M   +G  P  +HY C+ D+L R+G + +A   + KMP 
Sbjct: 332 GILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI 391

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
              D VV   LL AC+LHG+V +A+   +RL+EL P  SG YVL +N +A    WD+  +
Sbjct: 392 -VPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMK 450

Query: 468 VRKKME-RRVKKVASFSQIEVKG 489
           +R+ ME   V+K +  S IEV G
Sbjct: 451 MRELMEDSDVQKPSGSSSIEVDG 473



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 61/248 (24%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES--- 54
           +G  G +  A KLFD M + D +S  SMIT + +      A  LF+ M      P+    
Sbjct: 170 YGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTV 229

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       Q +I   +++ID Y K G V++A +VF  + +
Sbjct: 230 ASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKD 289

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTVVLGCAHNGLIAK- 140
            +  SWTS+ISG       +    LF +M   L+  V     ++  ++L CAH GL+ K 
Sbjct: 290 KDSVSWTSVISGLAVNGFANSALDLFSQM---LREGVQPTHGTFVGILLACAHAGLVNKG 346

Query: 141 LEVISWTTMCTG--------------LERNAMTKLAREYFVQMP-NKDIVAWNAMITAYV 185
           LE         G              L R+     A E+  +MP   D+V W  +++A  
Sbjct: 347 LEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACK 406

Query: 186 DAGNMAQA 193
             GN+  A
Sbjct: 407 LHGNVVLA 414


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/396 (35%), Positives = 211/396 (53%), Gaps = 23/396 (5%)

Query: 116 PLKLKNVVSWTTVVLG------CAHNGLIAKLEVIS-WTTMCTGLERNAMTKLAREYF-- 166
           P  LK V  ++++  G          GL + L V++ +  M +      +   AR+ F  
Sbjct: 82  PFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICD-ARKMFDG 140

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           + M   D+  WNAM+  Y   G++  A +LF  MPQRNV +W A+I  YA+      A+ 
Sbjct: 141 MSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIA 200

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE--GMLE--NMLAHALAIRLGFEQETSLTYKCTCHY 282
           L   M      P+E      LT+C   G LE    + H +  RLG      LT     + 
Sbjct: 201 LFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYID-RLGL-----LTTNIPLNN 254

Query: 283 VFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
              D +    D+ SA   FE +  K +++WT MI   + HG G +   +F+RM ++  KP
Sbjct: 255 ALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKP 314

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           ++ITF+ +LS CSH GLV+ GR  FN M   YG +P+ EHY C+ D+L RAG +KEA  +
Sbjct: 315 NDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTL 374

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           +++M P E + V+ G+LL AC  HGD  + +   + L+EL+P +SG Y L +N++A+RG 
Sbjct: 375 LAQM-PFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGR 433

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           W+E   VRK M +  VKK+   S IEV  + H  +A
Sbjct: 434 WNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIA 469



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 22/211 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +F  M  S  ++   +AM++GY K G +  AR +F+ + + NV SWT+LI+GY +A 
Sbjct: 134 ARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQAN 193

Query: 104 QVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159
           +  +   LF RM  +L+NV    ++    +  CA  G    LE+  W        R+ + 
Sbjct: 194 RPHDAIALFRRM--QLENVEPDEIAMLVALTACARLG---ALELGEWI-------RHYID 241

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           +L       +   +I   NA+I  Y  +G++  A ++F  M  + + TW  MI   A +G
Sbjct: 242 RLG------LLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHG 295

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               A+++ + M ++R  PN+ T  +IL++C
Sbjct: 296 LGTEALEMFSRMERARVKPNDITFIAILSAC 326



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 68/271 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G +  A  LF+ M Q + +S  ++IT + + +    A ALFR M      P+        
Sbjct: 162 GDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVAL 221

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      NI   +A+ID Y K+G +  A +VF+ +    +
Sbjct: 222 TACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTI 281

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +WT++I+G        E   +F RM   ++K N +++  ++  C+H GL+         
Sbjct: 282 ITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLV--------- 332

Query: 148 TMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP- 201
                       +  R YF +M ++      I  +  MI     AG++ +A  L   MP 
Sbjct: 333 ------------QTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPF 380

Query: 202 QRNVWTWNAMIDRYARNG-PEGAAMKLLNLM 231
           + N   W +++     +G PE   + L +L+
Sbjct: 381 EPNAVIWGSLLAACNTHGDPELGELALQHLL 411


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 252/487 (51%), Gaps = 29/487 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    +++V+ +A++D Y ++G +D AR+V D + E N 
Sbjct: 287 SLITLYLRMGDAAAARKVFDEM--DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 344

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI+ + +     E  +L+ +M       N+  +++V+  CA    +     I   
Sbjct: 345 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHAR 404

Query: 148 TMCTGLERNAMTKL--------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           ++  G   N                   A+  F  +P K+IV WN++++ Y   G M +A
Sbjct: 405 SLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEA 464

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
             LF  MP RN+ +WN +I  YA+N     A+K  N M  S  +P E T +S+L +C   
Sbjct: 465 MYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANL 524

Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
             ++   +AHA  I+LG E+   +    +  Y         D+ S++  F ++  ++ V+
Sbjct: 525 CSLVTGKMAHAKTIKLGIEESIFIGTALSDMY-----AKSGDLQSSKRMFYQMPERNDVT 579

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH GLVE+    F+ M 
Sbjct: 580 WTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKM- 638

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           +A G  P+ +HY+C+ D+L RAG++ EA  ++ K P     +    ALL AC  + +  +
Sbjct: 639 QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEAN-SWAALLSACNTYRNEEI 697

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
           A+   +RL EL   ++  YVL +N++A+ G W + A++R  M+   +KK    S ++V+G
Sbjct: 698 AERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 757

Query: 490 KDHTLLA 496
           + H   +
Sbjct: 758 QYHAFFS 764



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 208/446 (46%), Gaps = 61/446 (13%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P +   M++  ++  D+  A  LF  MP+  R +V+ + M+D  +K GRV EA +++++ 
Sbjct: 149 PFAYDFMVSEHVKAGDIASARRLFDGMPD--RTVVSYTTMVDALMKRGRVAEAVELYEQC 206

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIA-KL 141
             G+V  +T+ ISG+ +         +F +M   +++ N ++   ++  C   G     L
Sbjct: 207 PSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLAL 266

Query: 142 EVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDA 187
            ++         E     +N++  L         AR+ F +M  KD+V+W A++  Y ++
Sbjct: 267 SIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSES 326

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  + + MP+RN  +W  +I R+ + G    A+KL + M      PN +  +S+L
Sbjct: 327 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 386

Query: 248 TSCEGMLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HY 282
           ++C   LE++      HA ++++G     F   + +   C C                + 
Sbjct: 387 SACAS-LEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNI 445

Query: 283 VFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           V W+     + +   +  A   F+++ A+++ SW  +I  Y+ +       + F  ML S
Sbjct: 446 VCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLAS 505

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGR----KTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           G  P EITF  VL  C++   +  G+    KT  L     G +      + L+D+  ++G
Sbjct: 506 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL-----GIEESIFIGTALSDMYAKSG 560

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALL 419
            ++ + R+  +MP  ER+ V   A++
Sbjct: 561 DLQSSKRMFYQMP--ERNDVTWTAMI 584


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/507 (29%), Positives = 254/507 (50%), Gaps = 50/507 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y + G ++ AR+V DE+ E N 
Sbjct: 286 SLITLYLRKGDADAARRMFDEM--EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------- 134
            SW +L++ + +     E   L+ +M       N+  +++V+  CA              
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403

Query: 135 -------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                  N +     +I     C  L    M       F  +P K+IV WN++I+ Y + 
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDAQMI------FYSLPQKNIVCWNSLISGYSNN 457

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             M +A ELF  MP RNV +WN++I  YA+N     A+K  + M  S   P E T +S+L
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVL 517

Query: 248 TSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +C  +       + HA  I+LG ++   +    +  Y         D++S++  F  + 
Sbjct: 518 LACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMY-----AKSGDLDSSKRVFYEMP 572

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            ++ V+WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH+GLVE    
Sbjct: 573 KRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMH 632

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F +M +A G  P+A+HY+C+ D+L RAG + EA  ++ K+      +    ALL AC +
Sbjct: 633 YFEMM-QACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN-SWAALLSACNI 690

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFS 483
           + +  M +   +RL EL   ++  YVL +N++A+ G+W + A++R  M+   +KK    S
Sbjct: 691 YRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750

Query: 484 QIEVKGK---------DHTLLAPMREM 501
            ++++G+          H LL  + EM
Sbjct: 751 WVQIRGQYQAFFSWETKHPLLPDVYEM 777



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 195/440 (44%), Gaps = 61/440 (13%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M+   ++  D+  A  LF  MPE  R++V+ + M+D  +K G V +A +++ +    +V 
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPE--RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVP 211

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +T++I+G+       +   +F  M      P    N ++  +V+  C   G       I
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSP----NEITLVSVIKACIGAGEFDLAMSI 267

Query: 145 SWTTMCTGL------ERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGN 189
               M + L       RN++  L         AR  F +M  +D+V+W A++  Y + G+
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  + + MP+RN  +W  ++ R+ + G    A+ L + M      PN +  +S+L +
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 250 CEGMLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HYVF 284
           C   L+++ +    H   +++      F     +   C C                + V 
Sbjct: 388 CAS-LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 285 WDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           W+       N++++      F+++ A++V SW ++I  Y+ +       + F  ML SG 
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            P EITF  VL  C+    +E G+     + +  G K      + L+D+  ++G +  + 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSK 565

Query: 400 RVVSKMPPHERDHVVLGALL 419
           RV  +MP  +R+ V   A++
Sbjct: 566 RVFYEMP--KRNDVAWTAMI 583


>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 598

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 240/443 (54%), Gaps = 40/443 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N + ++A++D Y K G V +AR VFD + + +V +WT++I GY KA ++ + R LFD M 
Sbjct: 149 NKIVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNM- 207

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              +N  +WTT+V G A+ G +                     K A E +  M  K+ V 
Sbjct: 208 -GERNSFTWTTMVAGYANYGDM---------------------KAAMELYDVMNGKEEVT 245

Query: 177 WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           W AMI  Y   GN+++A  +F+ +P   N  T  A++  YA+NG    A+++   M +++
Sbjct: 246 WVAMIAGYGKLGNVSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMRRAK 305

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               +      +++C  + +  +++ L   I  GF ++T +      H        Q   
Sbjct: 306 IKVTDVAMVGAISACAQLRDIRMSNLLTYDIEEGFCEKTHIVSNALIH-------MQSKC 358

Query: 294 NSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            +  LA   F  +  +D+ +++AMI A++ HG       LF +M + G  P+++TFVGVL
Sbjct: 359 GNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVL 418

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CS +GL+E+G + F +M+  YG +P  EHY+C+ D+L RAGQ+++A  ++ K      
Sbjct: 419 NACSTSGLIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLI-KENSTSA 477

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D    G+LL ACR++G+V + +     L E+ P+ SG YVL AN +A+  +W+   +V+K
Sbjct: 478 DATTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKK 537

Query: 471 KMERR-VKKVASFS--QIEVKGK 490
            M ++ +KK + +S  Q E KG+
Sbjct: 538 LMSKKGMKKPSGYSWIQRETKGQ 560


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 184/334 (55%), Gaps = 24/334 (7%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D   +N +ITAY  AG +A A  LF+ MP RN  +W+AM++ Y + G    A+++   M 
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 233 QSRFMPNETTCTSILTSC--EGMLEN-------MLAHALAIRLGFEQETSLTY-KCTCHY 282
                P++T    +L +C   G LE        + AH + I L F       Y KC    
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCG--- 258

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    +V  A   FER++ K+V++WT MI   + HG G +   LFA+M  SG +PD
Sbjct: 259 ---------EVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPD 309

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           +I F+GVL  C+HAGLV+KGR+ F+ M R YG KP+ EHY C+ D+L R G + EA  ++
Sbjct: 310 DIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMI 369

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
            KM P E D ++ GAL+  CR H +V  A+Y+ +  I L+P  SGAYVL +N++AA G  
Sbjct: 370 QKM-PMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRH 428

Query: 463 DEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
               ++R  M E+ V K    S +EV G  H  +
Sbjct: 429 ASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFI 462



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 23/193 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +I  Y +AGR+ +AR +FDE+   N  SW+++++GY +A    E  R+F RM  + ++
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARM--QAED 204

Query: 122 VVSWTTVVLG----CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           V    TV++G    CA +G + + + +       G++ N                 +   
Sbjct: 205 VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKIN-----------------LFFG 247

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A++  Y   G +  A ++F  M  +NV  W  MI   A +G    A+ L   M  S   
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIR 307

Query: 238 PNETTCTSILTSC 250
           P++     +L +C
Sbjct: 308 PDDIAFIGVLCAC 320



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 109/263 (41%), Gaps = 73/263 (27%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           G  G + +   L    +  D  +  ++IT + R   L  A ALF  MP   RN V+ SAM
Sbjct: 123 GFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMP--ARNAVSWSAM 180

Query: 65  IDGYVKAGRVDEARKVF-----------DEIYEG-------------------------- 87
           ++GYV+AG   EA ++F           D +  G                          
Sbjct: 181 VNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGI 240

Query: 88  --NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
             N++  T+L+  Y K  +V     +F+RM  + KNV++WTT++ G A +G         
Sbjct: 241 KINLFFGTALVDMYSKCGEVQLAMDVFERM--QYKNVLAWTTMIKGLAMHG--------- 289

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMP 201
                 G E       A   F QM +  I    +A+  ++ A   AG + +  ELF+ M 
Sbjct: 290 -----RGSE-------AVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMV 337

Query: 202 QR-----NVWTWNAMIDRYARNG 219
           ++      +  +  M+D  ARNG
Sbjct: 338 RKYGIKPKIEHYGCMVDLLARNG 360



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 58/259 (22%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQR---- 56
           + +   G++ +A  LFDEM   + VS ++M+  +++  D  +A  +F R   E  R    
Sbjct: 151 TAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDT 210

Query: 57  --------------------------------NIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                           N+   +A++D Y K G V  A  VF+ +
Sbjct: 211 VLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERM 270

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE 142
              NV +WT++I G     +  E   LF +M       + +++  V+  C H GL+ K  
Sbjct: 271 QYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDK-- 328

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP- 201
                       R     + R+Y ++     I  +  M+      G + +A E+   MP 
Sbjct: 329 -----------GRELFDSMVRKYGIK---PKIEHYGCMVDLLARNGFLYEAKEMIQKMPM 374

Query: 202 QRNVWTWNAMID--RYARN 218
           + +   W A++   R+ +N
Sbjct: 375 EPDALIWGALMAGCRFHKN 393


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 153/508 (30%), Positives = 256/508 (50%), Gaps = 43/508 (8%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G  + A KLF EM     +PD ++ AS+++       L   + +   + ES  Q ++   
Sbjct: 511 GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG 570

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
           +A+I+ Y++ G + +AR VF  +   +V SWT++I G     +  +   LF +M      
Sbjct: 571 NALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFR 630

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
           P+K     ++++++  C  +  + + + +    + +G E                  D  
Sbjct: 631 PVK----STFSSILKVCTSSACLDEGKKVIAYILNSGYEL-----------------DTG 669

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA+I+AY  +G+M  A E+F+ MP R++ +WN +I  YA+NG    A++    M +  
Sbjct: 670 VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            +PN+ +  S+L +C     + E    HA  ++   + +  +       Y     G Q  
Sbjct: 730 VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYA--KCGSQ-- 785

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              A+  F+ +  K+VV+W AMI AY+ HG   +    F  M K G KPD  TF  +LS 
Sbjct: 786 -GEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSA 844

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+HAGLV +G + F+ M   YG  P  EHY CL  +L RA + +EA  ++++M P   D 
Sbjct: 845 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM-PFPPDA 903

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V   LLGACR+HG++ +A++     ++L   +   Y+L +NV+AA G WD+ A++R+ M
Sbjct: 904 AVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVM 963

Query: 473 E-RRVKKVASFSQIEVKGKDHTLLAPMR 499
           E R ++K    S IEV    H  +A  R
Sbjct: 964 EGRGIRKEPGRSWIEVDNIIHEFIAADR 991



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 185/428 (43%), Gaps = 34/428 (7%)

Query: 10  VKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN--IVAESA 63
           VKE   LF +MS     PD V+  +++  F     L + + + +   E   N  I   +A
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++   V+ G VD A++ F    + +V  + +LI+   +     E    + RM        
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD----- 324

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ-MPNKDIVAWNAMIT 182
                  G A N    +   +S    C+  +     KL   +  +   + D+   NA+I+
Sbjct: 325 -------GVALN----RTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G++ +A ELF  MP+R++ +WNA+I  YAR    G AM+L   M      P   T
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 243 CTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
              +L++C       +  + H   +R G +    L       Y          +  A+  
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCG-----SLMEAQNV 488

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FE  +A+DV+SW +MI  ++ HG     ++LF  M     +PD ITF  VLS C +   +
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           E G++    ++ + G +      + L ++  R G +++A  V   +    RD +   A++
Sbjct: 549 ELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSL--QHRDVMSWTAMI 605

Query: 420 GACRLHGD 427
           G C   G+
Sbjct: 606 GGCADQGE 613



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 181/417 (43%), Gaps = 47/417 (11%)

Query: 22  QPDPVSCASMITVFL-----RNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRV 74
           QP P        V L     R   LP+A+ +   M E+    +I   + +I+ YVK   V
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSV 78

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGC 132
            +A +VF E+   +V SW SLIS Y +     +  +LF+ M     + N +++ +++  C
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                +   + I    +  G +R+   +                 N++++ Y   G++ +
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQ-----------------NSLLSMYGKCGDLPR 181

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TS 249
           A ++F  +  R+V ++N M+  YA+       + L   M      P++ T  ++L   T+
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241

Query: 250 CEGMLENMLAHALAIRLGFEQE----TSLTYKCT-CHYVFWDWGFQLDVNSARLAFERLE 304
              + E    H L +  G   +    T+L   C  C           DV+SA+ AF+   
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG----------DVDSAKQAFKGTA 291

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +DVV + A+I A + HGH  + F  + RM   G   +  T++ +L+ CS +  +E G+ 
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKL 351

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
             + +S   G     +  + L  +  R G + +A  +   MP  +RD +   A++  
Sbjct: 352 IHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP--KRDLISWNAIIAG 405



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 11/257 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI   N +I  YV   ++  A ++F  MP+R+V +WN++I  YA+ G +  A +L   M 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 233 QSRFMPNETTCTSILTSC--EGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            + F+PN+ T  SILT+C     LEN    H+  I+ G++++  +       Y     G 
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMY-----GK 175

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D+  AR  F  +  +DVVS+  M+  Y+   +  +   LF +M   G  PD++T++ +
Sbjct: 176 CGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINL 235

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L   +   ++++G++   L     G        + L  +  R G V  A +        +
Sbjct: 236 LDAFTTPSMLDEGKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA--D 292

Query: 410 RDHVVLGALLGACRLHG 426
           RD VV  AL+ A   HG
Sbjct: 293 RDVVVYNALIAALAQHG 309


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 238/443 (53%), Gaps = 41/443 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++++D YVK G V  ARKVFDE+   ++ SWT++I GY +   + E R+LFD        
Sbjct: 162 TSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFD-------- 213

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                         G++ + +V ++  M  G  +     LAR+ F +M  K++++W +M+
Sbjct: 214 --------------GMVDR-DVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMV 258

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP-NE 240
             Y + G++ +A  LF+ MP++NV +WNAMI  Y +NG    A+KL   M  +  +  NE
Sbjct: 259 HGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNE 318

Query: 241 TTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKC-TCHYVFWDWGFQLDVN 294
            T  S+L +        +A   A+ LG     F Q   L      C+ +   +    ++ 
Sbjct: 319 VTVVSVLPA--------VADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIG 370

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A+L FE +  KD  SW A+I  Y  +G   +   +FA ML+ G +P++IT   VLS C+
Sbjct: 371 KAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACN 430

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           H GLVE+GR+ F  M R +G  P+ EHY C+ D+L RAG++ EA +++  M P++ + ++
Sbjct: 431 HCGLVEEGRRCFEAMER-FGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAM-PYDPNEII 488

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
           L + L AC    DV  A+ I +  ++++   +G YV+  N++A    W +   V++ M++
Sbjct: 489 LTSFLFACCYFEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKK 548

Query: 475 R-VKKVASFSQIEVKGKDHTLLA 496
           R   K  ++S IEV G+    +A
Sbjct: 549 RGSNKEVAWSVIEVDGRFREFVA 571



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 130/283 (45%), Gaps = 53/283 (18%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A K+FDEMS    VS  ++I  + R  D+ +A  LF  M +  R++ A + MIDG
Sbjct: 172 GDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVD--RDVAAFNVMIDG 229

Query: 68  YVKAGR-------------------------------VDEARKVFDEIYEGNVYSWTSLI 96
           YVK GR                               VDEAR +FD + E NV SW ++I
Sbjct: 230 YVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMI 289

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN 156
            GY +  +  +  +LF  M   +   ++  TVV        ++ L++  W          
Sbjct: 290 RGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWV--------- 340

Query: 157 AMTKLAREYFVQMPNKD--IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
                    FVQ    D  +   NA++  Y   G + +A  +F  M +++  +WNA+I+ 
Sbjct: 341 -------HGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALING 393

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           Y  NG    A+++  +M +  F PN+ T TS+L++C   G++E
Sbjct: 394 YGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVE 436



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF----DE 83
           C +++ ++ +  ++ KA+ +F  M E  ++  + +A+I+GY   G   EA +VF     E
Sbjct: 356 CNALVDMYAKCGEIGKAKLVFEEMTE--KDTGSWNALINGYGVNGCAKEALEVFAMMLRE 413

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            +E N  + TS++S       V+EGRR F+ M
Sbjct: 414 GFEPNQITMTSVLSACNHCGLVEEGRRCFEAM 445


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 222/435 (51%), Gaps = 44/435 (10%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           I  E+A++D Y K G ++ ARK+FDE+ E NV SW S+++GY KA  +++   LF +MP 
Sbjct: 22  IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMP- 80

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
             +N  SW  ++ G    G I                       AR +F  MP K+ V+W
Sbjct: 81  -ERNFASWNAMISGHVEFGDIDS---------------------ARSFFDAMPQKNNVSW 118

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS--R 235
             MI+ Y   G++  A ELF+ +  +++  +NAMI  YA+N     A+ L N M      
Sbjct: 119 MTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVN 178

Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+E T  S++++C  + +        +   RLG E +  L       Y          
Sbjct: 179 VQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCG-----S 233

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ A   F  L  KD+V++TAMIL    +G      +LF  M+ +   P+ ITF+G+L+ 
Sbjct: 234 IDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTA 293

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHER 410
            +HAGLVE+G + F  M + Y   P  +HY  + D+  RAG+++EA+ ++  MP  PH  
Sbjct: 294 YNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAG 352

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
              V GALL ACRLH +V   +   +   EL+P ++G   L +N++A+   WD+  ++RK
Sbjct: 353 ---VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRK 409

Query: 471 KMERRVKKVASFSQI 485
                V K   FS+I
Sbjct: 410 -----VTKEKGFSKI 419



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 20/260 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++ A K+FDEM++ + VS  SM+  +L+  D+ KA +LF+ MPE  RN  + +AMI G
Sbjct: 36  GDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPE--RNFASWNAMISG 93

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVV- 123
           +V+ G +D AR  FD + + N  SW ++ISGY K   VD    LFD++    L L N + 
Sbjct: 94  HVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMI 153

Query: 124 ------SWTTVVLGCAHNGLIAKLEV-------ISWTTMCTGLERNAMTKLAREYFVQMP 170
                 S     L   +N L   + V        S  + C+ L           Y  ++ 
Sbjct: 154 ACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLG 213

Query: 171 -NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              D     A++  Y   G++ +A ELF+ + ++++  + AMI     NG    A+KL +
Sbjct: 214 IEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFD 273

Query: 230 LMFQSRFMPNETTCTSILTS 249
            M  ++  PN  T   +LT+
Sbjct: 274 EMVDAQIFPNSITFIGLLTA 293


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 195/363 (53%), Gaps = 26/363 (7%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +VI +  M  G  +    + A+E F  M +K++ +WN M++     G + +A ELFN M 
Sbjct: 195 DVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK 254

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE---- 255
           ++N  +W+AMID Y + G    A+++ N+M +    P +   +S+L +C   G L+    
Sbjct: 255 EKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRW 314

Query: 256 -----NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                N  +++    LG      +  KC    + WD             FE++E K+V +
Sbjct: 315 IHAYVNNNSNSFDAVLG-TALVDMYAKCGRLDMAWD------------VFEKMEKKEVFT 361

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W AMI     HG       LF +M K   +P+ IT +GVLS C+H+G+V++G + FN M 
Sbjct: 362 WNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSME 421

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
             YG +P  EHY C+ D+L RAG + EA  V+  M P E    V GALLGACR HGDV +
Sbjct: 422 EVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM-PMEPSAAVWGALLGACRKHGDVEL 480

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
            + +G+ L+EL+P +SG Y L +N++A  G WD+ A VRK M ER VK     S I+  G
Sbjct: 481 GERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDG 540

Query: 490 KDH 492
             H
Sbjct: 541 VVH 543



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 22/226 (9%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           +   +++  +AMIDGY+K G V+ A+++F  + + NV SW  ++SG  K   ++E R LF
Sbjct: 191 DGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELF 250

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVI----------------SWTTMCTGLER 155
           + M  K KN +SW+ ++ G    G   + LEV                 S    C  L  
Sbjct: 251 NEM--KEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGA 308

Query: 156 NAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
               +    Y     N  D V   A++  Y   G +  A ++F  M ++ V+TWNAMI  
Sbjct: 309 LDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICG 368

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENML 258
              +G    A++L   M + +F PN  T   +L++C   GM++  L
Sbjct: 369 LGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGL 414



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 29/232 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V+ A +LF  M   +  S   M++   +   + +A  LF  M E  +N ++ SAMIDG
Sbjct: 210 GEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKE--KNEISWSAMIDG 267

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           Y+K G   EA +VF+ +    +    +  +S+++       +D+GR +       + N  
Sbjct: 268 YIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAY----VNNNS 323

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +    VLG A   + AK         C  L+      +A + F +M  K++  WNAMI  
Sbjct: 324 NSFDAVLGTALVDMYAK---------CGRLD------MAWDVFEKMEKKEVFTWNAMICG 368

Query: 184 YVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLM 231
               G    A ELF  M ++    N  T   ++   A +G     +++ N M
Sbjct: 369 LGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSM 420



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 120/295 (40%), Gaps = 24/295 (8%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+  A ++F  +P  NV+ +N +I    +N     A+     M  +   PN+ T  ++  
Sbjct: 79  NLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFK 138

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C   E   E +  HA  I+ G   +  +       Y     G   +V  AR        
Sbjct: 139 ACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMY-----GSFGEVEGARRMLGEDGN 193

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            DV+ + AMI  Y   G       LF  M         +   G ++ C   G++E+ R+ 
Sbjct: 194 SDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSG-MAKC---GMIEEAREL 249

Query: 366 FNLMSRAYGFKPRAE-HYSCLADILRRAGQVKEAMRVVSKMPPHE--RDHVVLGALLGAC 422
           FN M      K + E  +S + D   + G  KEA+ V + M   E      VL ++L AC
Sbjct: 250 FNEM------KEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAAC 303

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSA--NVHAARGEWDEFAQVRKKMERR 475
              G +    +I    +    +S  A + +A  +++A  G  D    V +KME++
Sbjct: 304 ANLGALDQGRWI-HAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKK 357


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 235/439 (53%), Gaps = 35/439 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A +A++D Y K G++D ARK+FDE+ + +  SWT+LI GY ++  +D   +LFD+M 
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMI 181

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            K  +  ++ T++      G            MC+          AR+ F +MP + +V+
Sbjct: 182 EK--DSAAFNTMIDAYVKLG-----------DMCS----------ARKLFDEMPERSVVS 218

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           W  MI  Y   GN+  A  LF+ MP++N+++WNAMI  Y +N     A+KL + M  +  
Sbjct: 219 WTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTS 278

Query: 237 M-PNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           + P+E T  S+L +    G L+     H    R   ++ T++       Y         +
Sbjct: 279 LEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCG-----E 333

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  +R  F+ +  K+  SW A+I A++ +G   +   LF  M   G  P+EIT +GVLS 
Sbjct: 334 IVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSA 393

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+H+GLVE+G++ F  M   +G  P+ EHY C+ D+L RAG ++EA +++  M P+E + 
Sbjct: 394 CNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM-PYEANG 451

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++L + L AC    DV  A+ + +  I+++  + G Y++  N++A    W E  +V+  M
Sbjct: 452 IILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLM 511

Query: 473 ERR-VKKVASFSQIEVKGK 490
            R  VKK A  S IEV  +
Sbjct: 512 RRNGVKKEAGCSAIEVDSR 530



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 133/269 (49%), Gaps = 25/269 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+  A KLFDEM     VS  ++I  ++R+ D+  A  LF  M E  ++  A + MID 
Sbjct: 137 GKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIE--KDSAAFNTMIDA 194

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YVK G +  ARK+FDE+ E +V SWT +I GY     +D  R LFD MP   KN+ SW  
Sbjct: 195 YVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMP--EKNLFSWNA 252

Query: 128 VVLGCAHNGL-IAKLEVISWTTMCTGLERNAMTKLA-REYFVQMPNKDIVAW-------- 177
           ++ G   N      L++       T LE + +T ++       +   D+  W        
Sbjct: 253 MISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 312

Query: 178 ---------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                     A+I  Y   G + ++  +F+ MP++   +WNA+I+ +A NG    A+ L 
Sbjct: 313 KLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLF 372

Query: 229 NLMFQSRFMPNETTCTSILTSCE--GMLE 255
             M    FMPNE T   +L++C   G++E
Sbjct: 373 MEMNHKGFMPNEITMIGVLSACNHSGLVE 401


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 253/516 (49%), Gaps = 35/516 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAESAMI 65
           GK+ EA  +F  M   D +S  SM++ F++N    +A   +  M ++ +  ++VA  ++I
Sbjct: 367 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 426

Query: 66  DGYVKAGRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               ++G      ++         + ++    SL+  Y K   +     +FD+MP K  +
Sbjct: 427 AASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK--D 484

Query: 122 VVSWTTVVLGCAHNGLIAK---------LEVISWTTM--------CTGLERNAMTKLARE 164
           VVSWTT++ G A NG  ++         LE I    M        C+GL+  +  K    
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 544

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           Y ++    D+V  N ++  Y + GN+  A+ +F L+  ++V +W +MI  Y  NG    A
Sbjct: 545 YIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 604

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCH 281
           ++L +LM ++   P+  +  SIL++   +    +    H   IR GF  E SL       
Sbjct: 605 LELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 664

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y          +  +R  F  +  KD+V WT+MI AY  HG G     LF RM      P
Sbjct: 665 YARCG-----TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAP 719

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D I FV VL  CSH+GL+ +GR+    M   Y  +P  EHY CL D+L RA  ++EA + 
Sbjct: 720 DHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQF 779

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           V  M   E    V  ALLGAC++H +  + +   ++L+E+ P + G YVL +NV+AA   
Sbjct: 780 VKGMEV-EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERR 838

Query: 462 WDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           W +  +VR +M+   +KK    S IEV  K HT +A
Sbjct: 839 WKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 874



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A +LF+ MP + ++TWNAMI  Y  NG    +++L   M  S    +
Sbjct: 156 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 215

Query: 240 ETTCTSILTSCEGMLEN----MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             T   IL +C G+L++       H LAI+ G+     +       Y   +     D+N 
Sbjct: 216 ACTFPCILKAC-GLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN-----DLNG 269

Query: 296 ARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           AR  F+R+ E +DVVSW +MI AYS++G   +  RLF  M K+   P+  TFV  L  C 
Sbjct: 270 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 329

Query: 355 HAGLVEKG 362
            +  +++G
Sbjct: 330 DSSFIKQG 337



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 171/408 (41%), Gaps = 59/408 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G + +A KLFD M      +  +MI  ++ N +   +  L+R M  S   I  ++ 
Sbjct: 160 YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS--GIPLDAC 217

Query: 64  MIDGYVKAGRVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                +KA  + + R+   E+        Y   V+   S++  Y K   ++  R+LFDRM
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 277

Query: 116 PLKLKNVVSWTTVVLGCAHNG-------LIAKLEVISWT----TMCTGLE--------RN 156
           P K ++VVSW +++   + NG       L  +++  S      T    L+        + 
Sbjct: 278 PEK-EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 336

Query: 157 AM----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
            M    T L   Y++     ++   NA+I  Y   G M +A+ +F  M   +  +WN+M+
Sbjct: 337 GMFIHATVLKSSYYI-----NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 391

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE 269
             + +NG    A++  + M  +   P+     SI+ +       L  M  HA A++ G +
Sbjct: 392 SGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD 451

Query: 270 QETSL------TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            +  +       Y   C   + D             F+++  KDVVSWT +I  ++ +G 
Sbjct: 452 SDLQVGNSLVDMYAKFCSMKYMD-----------CIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             +   LF  +   G   D +    +L  CS   L+   ++  + + R
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 548


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 256/493 (51%), Gaps = 25/493 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN--------IV 59
           G ++ A ++FD++ QP+     S+I  +  + D   A  LFR M  S  +        ++
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-VYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
                   Y +A  V     +  ++  G+ V+   +LI+ Y     +   R+LFD   + 
Sbjct: 222 KACGCKSAYWEAVLV---HGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFD--DIT 276

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            K +VSW +++      G+  K+++I    +     +      A+  F +   K++V+W 
Sbjct: 277 DKTLVSWNSMI---EITGV--KIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWT 331

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +MI+AY   G++  A ++F+ MP +NV +WN+MI  Y R G    A+ L N M  SR +P
Sbjct: 332 SMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVP 391

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSAR 297
           +E T  SIL +C  + + ++   +     +       Y  T +    D   +   V +A 
Sbjct: 392 DEATLVSILAACSQLGDLVMGKKIH---NYILSNKGAYGVTLYNSLIDMYAKCGPVVTAL 448

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F  +  K++VSW  +I A + HG G +  +LF  M   GT PDEIT  G+LS CSH+G
Sbjct: 449 DIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSG 508

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LV+ G   F+ M   Y      EHY+C+ D+L R G + EA+ ++ +M P + D VV GA
Sbjct: 509 LVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRM-PMKPDVVVWGA 567

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LLGACR+HG+V +   I ++L+EL+P S G YVL +N++     W++  ++RK M +R +
Sbjct: 568 LLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGI 627

Query: 477 KKVASFSQIEVKG 489
           KK  + S IE+ G
Sbjct: 628 KKGRAISSIEIDG 640



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 131/320 (40%), Gaps = 85/320 (26%)

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           DAG++  A  +F+ +PQ N + +N++I  Y+ +     A+ L   M  S   PNE T   
Sbjct: 160 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 219

Query: 246 ILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYV-------------- 283
           +L +C       E +L H LAI+LG     F Q   +     C  +              
Sbjct: 220 VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 279

Query: 284 FWDW-------GFQLDV----------------NSARLAFERLEAKDVVSWTAMILAYSN 320
              W       G ++D+                +SA+  F+R + K+VVSWT+MI AY+ 
Sbjct: 280 LVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQ 339

Query: 321 HGH---GFQVF----------------------------RLFARMLKSGTKPDEITFVGV 349
           HG      Q+F                             LF +M  S   PDE T V +
Sbjct: 340 HGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSI 399

Query: 350 LSDCSHAGLVEKGRKTFNLM---SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           L+ CS  G +  G+K  N +     AYG       Y+ L D+  + G V  A+ +  +MP
Sbjct: 400 LAACSQLGDLVMGKKIHNYILSNKGAYG----VTLYNSLIDMYAKCGPVVTALDIFLEMP 455

Query: 407 PHERDHVVLGALLGACRLHG 426
              ++ V    ++GA  LHG
Sbjct: 456 G--KNLVSWNVIIGALALHG 473



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A ++FD+M   + VS  SMI+ +LR     +A  LF  M  S+  +V +
Sbjct: 335 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR--VVPD 392

Query: 62  SAMIDGYVKA----GRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFD 113
            A +   + A    G +   +K+ + I        V  + SLI  Y K   V     +F 
Sbjct: 393 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 452

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLERNAMT 159
            MP   KN+VSW  ++   A +G       L  +++        I+ T + +    + + 
Sbjct: 453 EMP--GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 510

Query: 160 KLAREYFVQMP-----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
            +   YF +M       ++I  +  M+      G + +A EL   MP + +V  W A++
Sbjct: 511 DMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALL 569


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 232/442 (52%), Gaps = 27/442 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+I GY+   R+ E+ + +  + +  V   +   +  FKA           +M + L  
Sbjct: 115 NALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGA--------KMDVGLGR 166

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            +   T+++G     L     +I     C  LE        R+ F +MPN+D+++W  +I
Sbjct: 167 QIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLE------CGRKVFDEMPNRDVISWTELI 220

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           +AYV +GNM  A ELF+ +P +++  W  M+  +A+N     A+     M +     +E 
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280

Query: 242 TCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T   ++++C  +     A     +A +  F  + S+        ++   G    V  A  
Sbjct: 281 TLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCG---SVGDAYR 337

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+ ++ ++V S+++MIL ++ HG      +LF  M+K+  KP+ +TF+GVL+ CSHAG+
Sbjct: 338 VFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGM 397

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLG 416
           VE+G + F LM + YG KP A+HY+C+ D+L RAG+++EA  +V  MP  PH     V G
Sbjct: 398 VEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGG---VWG 454

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALLGACR+H    +A      L EL+P   G Y+L AN++A+ G W++ + VRK M  R 
Sbjct: 455 ALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRG 514

Query: 476 VKKVASFSQIEV-KGKDHTLLA 496
           ++K  +FS IE  KG  H   +
Sbjct: 515 LRKNPAFSWIESEKGMVHEFFS 536



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 21/231 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           SMI ++++   L     +F  MP   R++++ + +I  YVK+G ++ A ++FD +   ++
Sbjct: 187 SMIDMYIKCGFLECGRKVFDEMP--NRDVISWTELISAYVKSGNMESAGELFDGLPVKDM 244

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +WT ++SG+ +  +  E    F++M       + ++   V+  CA  G     + I   
Sbjct: 245 VAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWI--- 301

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                  R+   K   E+        +V  +A+I  Y   G++  A  +F  M +RNV++
Sbjct: 302 -------RDVAEK--SEF---GGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYS 349

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
           +++MI  +A +G    AMKL + M ++   PN  T   +LT+C   GM+E 
Sbjct: 350 YSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQ 400



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 60/249 (24%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------------- 53
           +G ++ A +LFD +   D V+   M++ F +N    +A   F  M E             
Sbjct: 226 SGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGV 285

Query: 54  --------------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
                                      + ++V  SA+ID Y K G V +A +VF  + E 
Sbjct: 286 ISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKER 345

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAK-LEVI 144
           NVYS++S+I G+    +V +  +LFD M   ++K N V++  V+  C+H G++ +  ++ 
Sbjct: 346 NVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIF 405

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QR 203
                C G++               P+ D   +  M+     AG + +A EL   MP + 
Sbjct: 406 ELMEKCYGIK---------------PSAD--HYTCMVDLLGRAGRLQEAHELVKTMPIEP 448

Query: 204 NVWTWNAMI 212
           +   W A++
Sbjct: 449 HGGVWGALL 457



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 112/272 (41%), Gaps = 71/272 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++   K+FDEM   D +S   +I+ ++++ ++  A  LF  +P   +++VA + M+ G
Sbjct: 196 GFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLP--VKDMVAWTVMVSG 253

Query: 68  YVKAGRVDEARKVFDEIYEGNVYS----------------------W------------- 92
           + +  +  EA   F+++ E  V +                      W             
Sbjct: 254 FAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGK 313

Query: 93  ------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
                 ++LI  Y K   V +  R+F  M  K +NV S+++++LG A +G +        
Sbjct: 314 HSVVVGSALIDMYSKCGSVGDAYRVFQGM--KERNVYSYSSMILGFAMHGRV-------- 363

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM------ 200
                    +AM KL  E        + V +  ++TA   AG + Q  ++F LM      
Sbjct: 364 --------HDAM-KLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGI 414

Query: 201 -PQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            P  + +T   M+D   R G    A +L+  M
Sbjct: 415 KPSADHYT--CMVDLLGRAGRLQEAHELVKTM 444


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/535 (30%), Positives = 261/535 (48%), Gaps = 66/535 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G + +A ++FD +   D  +   M+  + ++ D  KA  LF  M +   + N ++  +++
Sbjct: 207 GSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSIL 266

Query: 66  DGY----------------VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
           DG                 + AG VD+ R              TSLI  Y     ++  R
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVA------------TSLIRMYTTCGSIEGAR 314

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------- 161
           R+FD M  K+++VVSWT ++ G A NG I     +  T    G++ + +T +        
Sbjct: 315 RVFDNM--KVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAI 372

Query: 162 ------AREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
                 ARE   Q+       D++   A++  Y   G +  A ++F+ MP+R+V +W+AM
Sbjct: 373 SANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAM 432

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271
           I  Y  NG    A +  +LM +S   P+  T  ++L +C         H  A+ +G E  
Sbjct: 433 IGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNAC--------GHLGALDVGMEIY 484

Query: 272 T-SLTYKCTCHYVFWDWGFQLD-----VNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           T ++      H    +    ++     V  AR  F+ +  +DV++W AMI  YS HG+  
Sbjct: 485 TQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAR 544

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF RMLK   +P+ +TFVGVLS CS AG V++GR+ F  +    G  P  + Y C+
Sbjct: 545 EALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCM 604

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ EA  ++  MP       +  +LL ACR+HG++ +A+   ER + + P  
Sbjct: 605 VDLLGRAGELDEAELLIKSMPVKPTSS-IWSSLLVACRIHGNLDVAERAAERCLMIDPYD 663

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
              YV  ++++AA G W+  A+VRK ME R ++K    + IEV GK HT +   R
Sbjct: 664 GAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDR 718



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 214/488 (43%), Gaps = 73/488 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           +   G V EA ++FD +     V+  ++I  + +   + +A ALFR M            
Sbjct: 102 YSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITF 161

Query: 52  ----------------PESQRNIVAE---------SAMIDGYVKAGRVDEARKVFDEIYE 86
                            E    +V           +A++  YVK G +D+AR+VFD ++ 
Sbjct: 162 LSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHI 221

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVI 144
            +V ++  ++ GY K+   ++   LF RM  + LK N +S+ +++ GC     +A  + +
Sbjct: 222 RDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAV 281

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
               M  GL                   DI    ++I  Y   G++  A  +F+ M  R+
Sbjct: 282 HAQCMNAGLV-----------------DDIRVATSLIRMYTTCGSIEGARRVFDNMKVRD 324

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V +W  MI+ YA NG    A  L   M +    P+  T   I+ +C   +   L HA  I
Sbjct: 325 VVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA--ISANLNHAREI 382

Query: 265 R-----LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
                  GF   T L       +++   G    +  AR  F+ +  +DVVSW+AMI AY 
Sbjct: 383 HSQVDIAGF--GTDLLVSTALVHMYAKCG---AIKDARQVFDAMPRRDVVSWSAMIGAYV 437

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +G+G + F  F  M +S  +PD +T++ +L+ C H G ++ G + +    +A       
Sbjct: 438 ENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHV 496

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
              + L  +  + G V+ A  +   M    RD +   A++G   LHG+ R A Y+ +R++
Sbjct: 497 PLGNALIIMNAKHGSVERARYIFDTMV--RRDVITWNAMIGGYSLHGNAREALYLFDRML 554

Query: 440 E--LQPSS 445
           +   +P+S
Sbjct: 555 KERFRPNS 562



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 175/372 (47%), Gaps = 30/372 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q NI   + +I  Y   G V EAR++FD +    V +W +LI+GY +   V E   LF +
Sbjct: 89  QLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQ 148

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +    +++++ +V+  C+          ++W     G E +A    A   FV     
Sbjct: 149 MVDEGLEPSIITFLSVLDACSSPA------GLNW-----GKEVHAQVVTAG--FVS---- 191

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D     A+++ YV  G+M  A ++F+ +  R+V T+N M+  YA++G    A +L   M 
Sbjct: 192 DFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQ 251

Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           Q    PN+ +  SIL  C   E +      HA  +  G   +  +       Y       
Sbjct: 252 QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCG--- 308

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  AR  F+ ++ +DVVSWT MI  Y+ +G+    F LFA M + G +PD IT++ +
Sbjct: 309 --SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHI 366

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           ++ C+ +  +   R+  + +  A GF       + L  +  + G +K+A +V   MP   
Sbjct: 367 MNACAISANLNHAREIHSQVDIA-GFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP--R 423

Query: 410 RDHVVLGALLGA 421
           RD V   A++GA
Sbjct: 424 RDVVSWSAMIGA 435



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 33/289 (11%)

Query: 150 CTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           CT L   A+ K  R++ +Q   + +I   N +I  Y   GN+ +A ++F+ +  + V TW
Sbjct: 67  CTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTW 126

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR 265
           NA+I  YA+ G    A  L   M      P+  T  S+L +C    G+      HA  + 
Sbjct: 127 NALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVT 186

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            GF  +  +       YV    G  +D   AR  F+ L  +DV ++  M+  Y+  G   
Sbjct: 187 AGFVSDFRIGTALVSMYV---KGGSMD--DARQVFDGLHIRDVSTFNVMVGGYAKSGDWE 241

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           + F LF RM + G KP++I+F+ +L  C            +   + A+G   +A H  C+
Sbjct: 242 KAFELFYRMQQVGLKPNKISFLSILDGC------------WTPEALAWG---KAVHAQCM 286

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
                 AG V + +RV + +    R +   G++ GA R+  ++++ D +
Sbjct: 287 -----NAGLVDD-IRVATSLI---RMYTTCGSIEGARRVFDNMKVRDVV 326


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 197/359 (54%), Gaps = 30/359 (8%)

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V+SW+ +  G  R     +AR+ F +MP KD+V+WN MIT YV  G M  A  LF+  P+
Sbjct: 179 VVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPE 238

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--------- 253
           ++V TWN MI  Y   G +  A+++   M      P+E T  S+L++C  +         
Sbjct: 239 KDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKL 298

Query: 254 ---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
              +  M    L++ LG      +  KC              +  A   F+++  KDV +
Sbjct: 299 HCSISEMTRGDLSVLLG-NALVDMYAKCG------------SIEIALQVFKKMREKDVTT 345

Query: 311 WTAMILAYSNHGHGFQVFRLFARM--LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           W ++I   + HGH  +  +LFA M  LK+  KP+EITFVGV+  CSHAG VE+GR+ F L
Sbjct: 346 WNSVIGGLAFHGHAEESIKLFAEMQALKN-IKPNEITFVGVIVACSHAGNVEEGRRYFKL 404

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M   Y  +P   H+ C+ D+L RAG + EA  +++KM   E + ++   LLGACR+HG+V
Sbjct: 405 MRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEI-EPNAIIWRTLLGACRVHGNV 463

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIE 486
            +     ERL++L+   SG YVL +N++A+ GEWD   +VRK M+   V+K A  S IE
Sbjct: 464 ELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIE 522



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 42/282 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           T+ +   G++  A ++FDEM   D VS   MIT +++N ++  A  LF   PE  +++V 
Sbjct: 186 TAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPE--KDVVT 243

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            + MI GYV  G   +A ++F+E+       +  +  SL+S       +  GR+L   + 
Sbjct: 244 WNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSIS 303

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKL----------------EVISWTTMCTGLERNAMTK 160
              +  +S   V+LG A   + AK                 +V +W ++  GL  +   +
Sbjct: 304 EMTRGDLS---VLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAE 360

Query: 161 LAREYFVQM-------PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTW 208
            + + F +M       PN+  + +  +I A   AGN+ +    F LM +R     N+   
Sbjct: 361 ESIKLFAEMQALKNIKPNE--ITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHH 418

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             M+D   R G    A +L+  M      PN     ++L +C
Sbjct: 419 GCMVDLLGRAGLLSEAFELIAKM---EIEPNAIIWRTLLGAC 457



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 112/300 (37%), Gaps = 62/300 (20%)

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           +G +  A ++F  + + +++ WN M+   +++      + L   M      P++ T + +
Sbjct: 60  SGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFL 119

Query: 247 LTSC---EGMLENMLAHALAIRLGFE-----QETSLTYKCTC------HYVFWD------ 286
           L  C   E        H   ++ GFE     + T + +   C        +F+D      
Sbjct: 120 LKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSV 179

Query: 287 ---------------------------------WGFQL-------DVNSARLAFERLEAK 306
                                            W   +       ++ +AR  F+    K
Sbjct: 180 VSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEK 239

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DVV+W  MI  Y   G   Q   +F  M   G  PDE+T + +LS C+  G ++ GRK  
Sbjct: 240 DVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLH 299

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             +S            + L D+  + G ++ A++V  KM   E+D     +++G    HG
Sbjct: 300 CSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKM--REKDVTTWNSVIGGLAFHG 357



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 16/233 (6%)

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           N    +S+  +C  +L     HA  I  GF    +   +          G    +N A  
Sbjct: 12  NRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISG---AINYAHQ 68

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++   D+  W  M+   S   +  +V  L+ +M   G KPD+ TF  +L  C+    
Sbjct: 69  VFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTR--- 125

Query: 359 VEKGRKTFNLMSRA--YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           +E  +  F +  +   YGF+  +   + L       G +  A  +   +P  ER  V   
Sbjct: 126 LEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLP--ERSVVSWS 183

Query: 417 ALLGACRLHGDVRMADYIGER-----LIELQPSSSGAYVLSANVHAARGEWDE 464
           AL       G++ +A  I +      L+      +G YV +  +  AR  +DE
Sbjct: 184 ALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITG-YVKNGEMENARTLFDE 235


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 249/481 (51%), Gaps = 32/481 (6%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P  V    ++ ++ +   L  A  +F  MP   R++ + + M++GY + G ++EARK+FD
Sbjct: 118 PGIVIWNRLLRMYAKCGSLVDARKVFDEMP--NRDLCSWNVMVNGYAEVGLLEEARKLFD 175

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIA 139
           E+ E + YSWT++++GY K  Q +E   L+    R+P    N+ + +  V   A    I 
Sbjct: 176 EMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIR 235

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           + + I    +  GL                 + D V W++++  Y   G + +A  +F+ 
Sbjct: 236 RGKEIHGHIVRAGL-----------------DSDEVLWSSLMDMYGKCGCIDEARNIFDK 278

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           + +++V +W +MIDRY ++        L + +  S   PNE T   +L +C  +    L 
Sbjct: 279 IVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELG 338

Query: 260 ---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H    R+GF+  +  +      Y         ++ SA+   +     D+VSWT++I 
Sbjct: 339 KQVHGYMTRVGFDPYSFASSSLVDMYTKCG-----NIESAKHVVDGCPKPDLVSWTSLIG 393

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
             + +G   +  + F  +LKSGTKPD +TFV VLS C+HAGLVEKG + F  ++  +   
Sbjct: 394 GCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLS 453

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
             ++HY+CL D+L R+G+ ++   V+S+M P +    +  ++LG C  +G++ +A+   +
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
            L +++P +   YV  AN++AA G+W+E  ++RK+M E  V K    S  E+K K H  +
Sbjct: 513 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFI 572

Query: 496 A 496
           A
Sbjct: 573 A 573



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 184/439 (41%), Gaps = 96/439 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQRNI------ 58
           G ++EA KLFDEM++ D  S  +M+T +++     +A  L+  M   P S+ NI      
Sbjct: 165 GLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIA 224

Query: 59  -----------------------------VAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                        V  S+++D Y K G +DEAR +FD+I E +V
Sbjct: 225 VAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDV 284

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I  YFK+ +  EG  LF  +    +  N  ++  V+  CA             T
Sbjct: 285 VSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACA-----------DLT 333

Query: 148 TMCTGLERNA-MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
           T   G + +  MT++  + +         A ++++  Y   GN+  A  + +  P+ ++ 
Sbjct: 334 TEELGKQVHGYMTRVGFDPYS-------FASSSLVDMYTKCGNIESAKHVVDGCPKPDLV 386

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           +W ++I   A+NG    A+K  +L+ +S   P+  T  ++L++C         HA  +  
Sbjct: 387 SWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSAC--------THAGLVEK 438

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G E   S+T K    +    +   +D+ +    FE+L  K V+S   M            
Sbjct: 439 GLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQL--KSVISEMPM------------ 484

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
                        KP +  +  VL  CS  G ++   +    + +     P    Y  +A
Sbjct: 485 -------------KPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVT--YVTMA 529

Query: 387 DILRRAGQVKEAMRVVSKM 405
           +I   AG+ +E  ++  +M
Sbjct: 530 NIYAAAGKWEEEGKMRKRM 548



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 112/278 (40%), Gaps = 66/278 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           +G  G + EA  +FD++ + D VS  SMI  + ++    +  +LF  +            
Sbjct: 263 YGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTF 322

Query: 52  ------------PESQRNI-------------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
                        E  + +              A S+++D Y K G ++ A+ V D   +
Sbjct: 323 AGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPK 382

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIAK- 140
            ++ SWTSLI G  +  Q DE  + FD   L LK     + V++  V+  C H GL+ K 
Sbjct: 383 PDLVSWTSLIGGCAQNGQPDEALKYFD---LLLKSGTKPDHVTFVNVLSACTHAGLVEKG 439

Query: 141 LEVI--------------SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYV 185
           LE                 +T +   L R+   +  +    +MP K     W +++    
Sbjct: 440 LEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCS 499

Query: 186 DAGNM----AQASELFNLMPQRNVWTWNAMIDRYARNG 219
             GN+      A ELF + P+  V T+  M + YA  G
Sbjct: 500 TYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAAG 536


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/513 (29%), Positives = 264/513 (51%), Gaps = 31/513 (6%)

Query: 7   TGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G    A ++F EM    +P+  +  ++I+ F     LP+   +   +  +    ++V  
Sbjct: 186 SGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVA 245

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+I+ Y K G   EAR+VFD++ + ++ SW  +I  Y       E   L+ ++ ++   
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFK 305

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-----NAMTKL---------AREY 165
           +   ++ +++  C+    +A+  ++    +  GL+       A+  +         AR+ 
Sbjct: 306 RTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKV 365

Query: 166 FVQMPNKDIVAWNAMITAYVDAG---NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           F  M N+D VAW+ +I AY   G   +  +A ++F+ +  R+  +WNAMI  Y +NG   
Sbjct: 366 FNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAV 425

Query: 223 AAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG-FEQETSLTYKCTC 280
           AAMK+   M  +  + P+  T  ++L +C  +       AL  ++   E E+++    T 
Sbjct: 426 AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTL 485

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
             ++   G    +  A   F   + K VVSWTAM+ A+S +G   +   LF  M   G K
Sbjct: 486 INMYARCG---SLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVK 542

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD++T+  +L  C+H G +E+G + F  M+  +   P A+H++ + D+L R+G++ +A  
Sbjct: 543 PDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKE 602

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  M P E D V     L ACR+HG + + +   ER+ EL PSS+  Y+  +N++AA G
Sbjct: 603 LLESM-PFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHG 661

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDH 492
            W++ A VRKKME R +KK+   S IEV GK H
Sbjct: 662 MWEKVASVRKKMEERGLKKLPGLSFIEVDGKLH 694



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 180/394 (45%), Gaps = 38/394 (9%)

Query: 72  GRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           G V E R + + I    +E +     +LIS Y K   + + R +F+ M  + +NVVSW  
Sbjct: 21  GDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA----------------REYFVQMPN 171
           ++   A NG   +  V+ W     GL  + +T ++                R ++  + +
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDS 140

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
              +A NA++T Y   G++  A  +F  +  R+  +WNA+I  ++++G    A+++   M
Sbjct: 141 FQSLA-NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 232 FQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
            +    PN TT  +++   ++ E + E    HA  +  GF+ +  +       Y     G
Sbjct: 200 -KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMY-----G 253

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
                + AR  F++++ +D+VSW  MI  Y  +G   +   L+ ++   G K  + TFV 
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 349 VLSDCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           +L  CS    + +GR    +++ R  G        + L ++  + G ++EA +V + M  
Sbjct: 314 ILGACSSVKALAQGRLVHSHILER--GLDSEVAVATALVNMYAKCGSLEEARKVFNAMK- 370

Query: 408 HERDHVVLGALLGACRLHG---DVRMADYIGERL 438
             RD V    L+GA   +G   D R A  + +RL
Sbjct: 371 -NRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 52/374 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           +A++  Y + G V +A+++F  +   +  SW ++I  + ++       R+F  M   +K 
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKP 205

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N  ++  V+ G +   ++ +   I    +  G                  + D+V   A+
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVANGF-----------------DTDLVVATAL 248

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G+  +A E+F+ M +R++ +WN MI  Y  NG    A++L   +    F   +
Sbjct: 249 INMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTK 308

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHY--------------- 282
            T  SIL +C   + + +  L H+  +  G + E ++       Y               
Sbjct: 309 ATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNA 368

Query: 283 ------VFWDW--------GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                 V W          G+  D   AR  F+RL ++D +SW AMI  Y  +G      
Sbjct: 369 MKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAM 428

Query: 329 RLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
           ++F  M   +G KPD +TF+ VL  C+  G + + +     +S +   +      + L +
Sbjct: 429 KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE-LESNVVVTNTLIN 487

Query: 388 ILRRAGQVKEAMRV 401
           +  R G ++EA R+
Sbjct: 488 MYARCGSLEEAERL 501



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 25/219 (11%)

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P+  T  ++L SC    + +   AL  R+    FE++T +       Y   D      + 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCD-----SLV 59

Query: 295 SARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            AR  FE ++   ++VVSW AMI AY+ +GH  +   L+ RM   G   D +TFV VL  
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMPPH 408
           CS    + +GR+  N +     F    + +  LA+ L     R G V +A R+   +   
Sbjct: 120 CSS---LAQGREIHNRV-----FYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSL--Q 169

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERL-IELQPSSS 446
            RD     A++ A    GD   A  I + +  +++P+S+
Sbjct: 170 TRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNST 208


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 236/443 (53%), Gaps = 33/443 (7%)

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           ++I  Y + G +  AR+VFDEI E ++ SW S+ISGY +     +   LF  M       
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEP 225

Query: 123 VSWTTV-VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW--NA 179
              T V +LG    G +  L + SW                 E FV     D+ ++  +A
Sbjct: 226 DEMTLVSILGAC--GDLGDLGLGSWI----------------EGFVVENEMDLNSFVGSA 267

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y   G+++ A  +F+ M +++V TWNAMI  YA+NG    A+ L + M +S   P+
Sbjct: 268 LIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPD 327

Query: 240 ETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           + T   +L++C   G L+        A   G + +  ++      Y          ++ A
Sbjct: 328 KITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCG-----SLDDA 382

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCS 354
              FE +  K+ VSW AMI A + HG   +   LF RM K G   +P++I+F+GVLS C 
Sbjct: 383 LRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACV 442

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLV++GR+ F+LMS ++G  P+ EH+SC+ D+L RAG V EA   + KM P + D VV
Sbjct: 443 HAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKM-PEKPDEVV 501

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
           LGALLGAC+   +V +++ +   L+E++P +SG Y++S+ + A    WD+ A++R  M +
Sbjct: 502 LGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQ 561

Query: 475 R-VKKVASFSQIEVKGKDHTLLA 496
           R V K    S IE++ + H   A
Sbjct: 562 RGVTKTPGCSWIEIENQVHEFHA 584



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 148/287 (51%), Gaps = 12/287 (4%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +++IT Y   G +  A  +F+ + ++++ +WN+MI  Y+R G  G A+ L   M  + F 
Sbjct: 165 HSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFE 224

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSA 296
           P+E T  SIL +C  + +  L   +    GF  E  +             +G   D++SA
Sbjct: 225 PDEMTLVSILGACGDLGDLGLGSWIE---GFVVENEMDLNSFVGSALIGMYGKCGDLSSA 281

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+R+  KDVV+W AMI  Y+ +G   +   LF+ M +SG  PD+IT VGVLS C+  
Sbjct: 282 RRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASI 341

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G ++ G K  +  +   G +      + L D+  + G + +A+RV   MP  +++ V   
Sbjct: 342 GALDFG-KWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMP--QKNEVSWN 398

Query: 417 ALLGACRLHGDVRMADYIGERLIE----LQPSS-SGAYVLSANVHAA 458
           A++ A   HG  + +  + +R+ +    ++P+  S   VLSA VHA 
Sbjct: 399 AMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAG 445



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQ 55
           S +   G   +A  LF EM     +PD ++  S++       DL     +  F    E  
Sbjct: 200 SGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMD 259

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N    SA+I  Y K G +  AR+VFD + + +V +W ++I+GY +    DE   LF  M
Sbjct: 260 LNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGM 319

Query: 116 PLKLKNV--VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
                N   ++   V+  CA    I  L+   W           +   A E  +Q    D
Sbjct: 320 RESGVNPDKITLVGVLSACAS---IGALDFGKW-----------LDTYASERGLQ---ND 362

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           I    A+I  Y   G++  A  +F  MPQ+N  +WNAMI   A +G    ++ L   M +
Sbjct: 363 IYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSK 422

Query: 234 --SRFMPNETTCTSILTSC 250
                 PN+ +   +L++C
Sbjct: 423 EGGAVRPNDISFIGVLSAC 441



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 22/263 (8%)

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           L++   TK  ++   QM    I   N ++  ++D  +   AS LF+ +P  N + +N MI
Sbjct: 38  LKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMI 97

Query: 213 DRYARNGPE-GAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGF 268
                   +    ++    M      PN  T   +  +C  +L       AH+  ++ G 
Sbjct: 98  RGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGL 157

Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
             +  + +     Y         ++  AR  F+ +  KD+VSW +MI  YS  G+     
Sbjct: 158 CADGHVRHSLITMYSRCG-----ELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAV 212

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH------Y 382
            LF  M  +G +PDE+T V +L  C   G          L S   GF    E        
Sbjct: 213 GLFGEMRDAGFEPDEMTLVSILGACGDLG-------DLGLGSWIEGFVVENEMDLNSFVG 265

Query: 383 SCLADILRRAGQVKEAMRVVSKM 405
           S L  +  + G +  A RV  +M
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRM 288



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 57/241 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           +G  G +  A ++FD M + D V+  +MIT + +N    +A  LF  M ES         
Sbjct: 272 YGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITL 331

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       Q +I   +A+ID Y K G +D+A +VF+++ +
Sbjct: 332 VGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQ 391

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK----LKNVVSWTTVVLGCAHNGLIAKLE 142
            N  SW ++IS      +  E   LF RM  +      N +S+  V+  C H GL+    
Sbjct: 392 KNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVD--- 448

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                      E   +  L    F  +P   I   + M+     AG++ +A +    MP+
Sbjct: 449 -----------EGRQLFDLMSSSFGLVPK--IEHHSCMVDLLARAGHVHEAWDFIEKMPE 495

Query: 203 R 203
           +
Sbjct: 496 K 496


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 193/350 (55%), Gaps = 20/350 (5%)

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           +LAR+ F QMP + +  WNAM+  +   G+M  A ELF LMP RNV +W  MI  Y+R+ 
Sbjct: 135 ELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSK 194

Query: 220 PEGAAMKLLNLMFQSR-FMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQE---- 271
             G A+ L   M Q +  MPN  T  SI  +    G LE      A A + GF +     
Sbjct: 195 KYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVS 254

Query: 272 -TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              L     C  +   W    ++ S R         ++ SW +MI+  + HG   +  +L
Sbjct: 255 NAVLEMYAKCGKIDVAWKVFNEIGSLR---------NLCSWNSMIMGLAVHGECCKTLKL 305

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           + +ML  GT PD++TFVG+L  C+H G+VEKGR  F  M+ ++   P+ EHY C+ D+L 
Sbjct: 306 YDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLG 365

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAGQ++EA  V+ +M P + D V+ GALLGAC  H +V +A+   E L  L+P + G YV
Sbjct: 366 RAGQLREAYEVIQRM-PMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYV 424

Query: 451 LSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
           + +N++A+ G+WD  A++RK M+  ++ K A  S IE  G+ H  +   R
Sbjct: 425 ILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDR 474



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 25/240 (10%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +PD  +  +++ ++ +   L  A  LF  MP   R +   +AM+ G+ + G +D A ++F
Sbjct: 115 EPDLFAATALLDMYTKVGTLELARKLFDQMP--VRGVPTWNAMMAGHARFGDMDVALELF 172

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLI 138
             +   NV SWT++ISGY ++++  E   LF RM  +   + N V+  ++    A+ G  
Sbjct: 173 RLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLG-- 230

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
             LE+        G    A  +    +F     K++   NA++  Y   G +  A ++FN
Sbjct: 231 -ALEI--------GQRVEAYAR-KNGFF-----KNLYVSNAVLEMYAKCGKIDVAWKVFN 275

Query: 199 -LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            +   RN+ +WN+MI   A +G     +KL + M      P++ T   +L +C   GM+E
Sbjct: 276 EIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVE 335



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 107/258 (41%), Gaps = 34/258 (13%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP-EGAAMKLLNLMFQSRFMP 238
           +I   ++  N+  A ++ +  P+  ++ +N +I  Y+ +   +     L + M    F+P
Sbjct: 22  LIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLP 81

Query: 239 NETTCTSILTSCEGM----LENMLAHALAIRLGFEQETSLTYKCTCHYV----------F 284
           N+ T   + ++C  +    L  ML H   I+ GFE +          Y            
Sbjct: 82  NQHTFNFLFSACTSLSSPSLGQML-HTHFIKSGFEPDLFAATALLDMYTKVGTLELARKL 140

Query: 285 WD---------WGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           +D         W   +       D++ A   F  + +++VVSWT MI  YS      +  
Sbjct: 141 FDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEAL 200

Query: 329 RLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
            LF RM  + G  P+ +T   +    ++ G +E G++     +R  GF       + + +
Sbjct: 201 GLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRV-EAYARKNGFFKNLYVSNAVLE 259

Query: 388 ILRRAGQVKEAMRVVSKM 405
           +  + G++  A +V +++
Sbjct: 260 MYAKCGKIDVAWKVFNEI 277



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 63/266 (23%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G ++ A KLFD+M      +  +M+    R  D+  A  LFR MP   RN+V+ + MI 
Sbjct: 131 VGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPS--RNVVSWTTMIS 188

Query: 67  GYVKAGRVDEARKVFDEI----------------------------------------YE 86
           GY ++ +  EA  +F  +                                        + 
Sbjct: 189 GYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFF 248

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----- 141
            N+Y   +++  Y K  ++D   ++F+ +   L+N+ SW ++++G A +G   K      
Sbjct: 249 KNLYVSNAVLEMYAKCGKIDVAWKVFNEIG-SLRNLCSWNSMIMGLAVHGECCKTLKLYD 307

Query: 142 ---------EVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVA----WNAMITAYVDA 187
                    + +++  +        M +  R  F  M    +I+     +  M+     A
Sbjct: 308 QMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRA 367

Query: 188 GNMAQASELFNLMPQR-NVWTWNAMI 212
           G + +A E+   MP + +   W A++
Sbjct: 368 GQLREAYEVIQRMPMKPDSVIWGALL 393



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 311 WTAMILAYSNHG-HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +  +I AYS+H  H  Q F L+++ML     P++ TF  + S C+       G+      
Sbjct: 50  YNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHF 109

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            ++ GF+P     + L D+  + G ++ A ++  +MP       V G       + G  R
Sbjct: 110 IKS-GFEPDLFAATALLDMYTKVGTLELARKLFDQMP-------VRGVPTWNAMMAGHAR 161

Query: 430 MADY-IGERLIELQPS 444
             D  +   L  L PS
Sbjct: 162 FGDMDVALELFRLMPS 177


>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
 gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
          Length = 545

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 249/514 (48%), Gaps = 46/514 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRN-HDLPKAEALFRAMPES--QRNIVA 60
           +G  G ++ A ++F  + + D +S   MI+++ ++ H   +A  LFR M       N V 
Sbjct: 55  YGKCGALESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVT 114

Query: 61  ESAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
             A++     A  ++E RK+  ++    Y G +    +LI  Y K   +++ R+ F  M 
Sbjct: 115 FLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMD 174

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------P 170
            K                     K +++ WT M      +   K A E F QM      P
Sbjct: 175 EK--------------------NKPDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKP 214

Query: 171 NKDIVA-WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           +K +V+  NA++  Y   GN+A A ++F+ M +R+  +W  MI  YA +G +  A+++  
Sbjct: 215 DKSLVSIGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYDREALQIFK 274

Query: 230 LMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           +M      P++ T  ++L +C    G+ +  L +   +  G   E  L        +F  
Sbjct: 275 VMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESG-AHELDLVLGNAVARMFGS 333

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            G    +  AR  FE L A+DVVSW  +I AY+ HG   +  RLF RML+   KPDE+TF
Sbjct: 334 CG---SLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRMLEECVKPDEVTF 390

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           VGVLS CSH GLV  G + F  M + Y       HY C+ D+L RAG++ EA  ++S++P
Sbjct: 391 VGVLSACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRLAEAEELLSRLP 450

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               + V+  +LL +C+LH D+       ++L+ + P      +  A +HAA GEW E  
Sbjct: 451 CAATNDVMWTSLLSSCKLHSDLDRGKRAAKKLLAMVPGDPSHLLALATIHAASGEWKEAM 510

Query: 467 QVRKKMERRVK-----KVASFSQIEVKGKDHTLL 495
           ++RK++  R            S+IEV G+ H  +
Sbjct: 511 RIRKEVMERCSGAARGGAGGMSRIEVNGQVHKFV 544



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 129/297 (43%), Gaps = 39/297 (13%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-PEGAAMKLLNLM 231
           DIV  NA++  Y   G +  A E+F+ +P+ +  +WN MI  YA++G     A++L   M
Sbjct: 44  DIVISNALVNMYGKCGALESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRM 103

Query: 232 FQSRFMPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 PN+ T  +IL++     G+ E    H   +  G+  E S+       Y      
Sbjct: 104 HGEGLTPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCG-- 161

Query: 289 FQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
               +  AR  F  ++ K   D+V WTAMI AY+ HG   + F LF +M   G KPD+ +
Sbjct: 162 ---SLEDARKTFAGMDEKNKPDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPDK-S 217

Query: 346 FVGVLSDCSH----AGLVEKGRKTFNLM------SRAYGFKPRAEH-YSCLADILRRAGQ 394
            V + +   H     G V   RK F+ M      S        AEH Y       R A Q
Sbjct: 218 LVSIGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVYAEHGYD------REALQ 271

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           + + M + S  P    D V L  +L AC       ++     RL+  Q   SGA+ L
Sbjct: 272 IFKVMLLESVAP----DKVTLINVLDACS-----NVSGLAQGRLVYKQFVESGAHEL 319


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 232/449 (51%), Gaps = 27/449 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   SA+++ Y+K G +++A+KVF E+   +V  W ++I+GY K   +DE   +F R
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRR 201

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M +K    +  + T ++   A  G +   + +    M  G +                  
Sbjct: 202 MHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSG---------------- 245

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +   NA+I  Y    ++  A  +F ++ ++++++WN++I  + + G     ++L + M 
Sbjct: 246 -VSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKML 304

Query: 233 QSRFMPNETTCTSILTSCE---GMLENMLAHALAI--RLGFEQETSLTYKCTCHYVFWDW 287
            S  +P+  T T++L +C     ++     H   I   LG + E              D 
Sbjct: 305 GSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDM 364

Query: 288 GFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
             +   +N+A   F+ +  KDV SW  MI+ Y  HG+  +   +F++M ++  KP+E+T 
Sbjct: 365 YAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTL 424

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           VGVLS C+HAG V  GR     M   +G  P  EHY+C+ D+L RAG +++A  +V KMP
Sbjct: 425 VGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP 484

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             + + VV  ALLGACRLHG+  +A+    ++++L+P   G+YVL +NV+   G ++E  
Sbjct: 485 I-QANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVL 543

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           +VRK M E+ VKK    S IE+K   H  
Sbjct: 544 EVRKTMKEQNVKKTPGCSWIELKDGVHVF 572



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 179 AMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           ++I  Y   G M +A  +F +   +RNV+ +NA+I  +  NG      +    M     M
Sbjct: 51  SLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVM 110

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           P++ T   ++ +C  ++E    H   +++G E +  +       Y+         +  A+
Sbjct: 111 PDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYL-----KNGSMEDAQ 165

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F  L  +DVV W AMI  Y+  G   +   +F RM   G  P   T  G+LS  +  G
Sbjct: 166 KVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRG 225

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            ++ G+    ++ +  G+       + L D+  +   + +A+ +
Sbjct: 226 DLDNGKTVHGIVMKM-GYDSGVSVSNALIDMYGKCKHIGDALII 268


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 229/461 (49%), Gaps = 76/461 (16%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y + G V  A+KVF+E++E NV +W ++++  F+   V     +F+RMP +   
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR--- 201

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                                + SW  M  G  +    +LAR+ F++MP KD V+W+ MI
Sbjct: 202 --------------------NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMI 241

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             +   G   +A   F  + Q                      M+           PNE 
Sbjct: 242 VGFAHNGFFYEAFGFFRELQQ--------------------VGMR-----------PNEV 270

Query: 242 TCTSILTSCEGMLENMLAHALAIRL-----GFEQETSLTYKCTCHYVFWD-WGFQLDVNS 295
           + T  L++C        A A AI       GF +++   +  + +    D +    +V  
Sbjct: 271 SLTGALSAC--------ADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGM 322

Query: 296 ARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           ARL FER+ E + +VSWT+MI   + HG+G +  +LF  M +SG +PD I F+ +L  CS
Sbjct: 323 ARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACS 382

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGL+EKG + F  M   Y  +P  EHY C+ D+  RAGQ+ +A   +  MP      ++
Sbjct: 383 HAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTA-II 441

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
              LLGAC +HG+V++A+ + ERL EL P++SG +VL +N++A  G+W + A VR+ M +
Sbjct: 442 WRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTD 501

Query: 474 RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           +R+ K   +S IEV    ++ +A      + E  Y  LKE+
Sbjct: 502 QRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEI 542



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 30/272 (11%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G V  A K+F+EM +P+ V+  +++T   R  D+  A+ +F  MP   RN+ +
Sbjct: 148 VSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMP--FRNLTS 205

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--K 118
            + M+ GY KAG ++ ARK+F E+   +  SW+++I G+       E    F  +     
Sbjct: 206 WNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGM 265

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             N VS T  +  CA  G       I +  +  G        + +  F+ M + +    N
Sbjct: 266 RPNEVSLTGALSACADAG------AIEFGKILHGF-------IEKSGFLWMVSVN----N 308

Query: 179 AMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           A++  Y   GN+  A  +F  MP+ R++ +W +MI   A +G    A++L + M +S   
Sbjct: 309 ALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIR 368

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
           P+     SIL +C        +HA  I  G+E
Sbjct: 369 PDGIAFISILYAC--------SHAGLIEKGYE 392



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 91/239 (38%), Gaps = 66/239 (27%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---------- 57
           G+++ A KLF EM   D VS ++MI  F  N    +A   FR + +              
Sbjct: 217 GELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGAL 276

Query: 58  ---------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEG-NV 89
                                      +   +A++D Y K G V  AR VF+ + E  ++
Sbjct: 277 SACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSI 336

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I+G       +E  +LF  M       + +++ +++  C+H GLI K       
Sbjct: 337 VSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEK------- 389

Query: 148 TMCTGLERNAMTKLAREYFVQMPN-----KDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                           EYF +M +       I  +  M+  Y  AG + +A E    MP
Sbjct: 390 --------------GYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMP 434


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 254/511 (49%), Gaps = 41/511 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           S +  +G V++   +FD+MS  D VS  ++I  F  N    +A   F  M E        
Sbjct: 97  SAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDY 156

Query: 58  -----IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
                + A S ++D  +K G+    R V   + E +V+ W +L + Y K   +D+ R LF
Sbjct: 157 THVSVLHACSQLLD--IKRGKQIHGRIVATSLGE-SVFVWNALTNMYAKCGALDQARWLF 213

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           DRM  K  NVVSW +++ G   NG       +      +GL               MP  
Sbjct: 214 DRMVNK--NVVSWNSMISGYLQNGQPETCTKLFCEMQSSGL---------------MP-- 254

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D V  + +++AY   G + +A + F  + +++   W  M+   A+NG E  A+ L   M 
Sbjct: 255 DQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREML 314

Query: 233 QSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                P+  T +S+++SC     + +    H  A+  G + +  ++      Y     G 
Sbjct: 315 LENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYS--KCGE 372

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D   A + F+R+  ++V+SW +MIL Y+ +G   +   L+  ML    KPD ITFVGV
Sbjct: 373 TAD---AWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGV 429

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C HAGLVE+G+  F  +S+ +G  P  +HYSC+ ++L RAG + +A+ ++  M   E
Sbjct: 430 LSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSM-TFE 488

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + ++   LL  CR++ DV   +     L EL P ++G Y++ +N++AA G W + A VR
Sbjct: 489 PNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVR 548

Query: 470 KKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
             M+  ++KK A++S IE+  + H  +A  R
Sbjct: 549 SLMKNNKIKKFAAYSWIEIDNQVHKFVAEDR 579



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 179/420 (42%), Gaps = 61/420 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP---ESQRNIVAESA 63
           T +++EA          +  S   ++   +R++D+ +A+ L   M        +   ++ 
Sbjct: 4   TPRLREAIDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNR 63

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++  Y K+G + +AR +FD++   +V+SW +++S Y K+  V++ R +FD+M   + + V
Sbjct: 64  LLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM--SVHDAV 121

Query: 124 SWTTVVLGCAHNGLIAK------------LEVISWTTM-----CTGLERNAMTKLAREYF 166
           S+ TV+ G + NG  ++             E   +T +     C+ L      K      
Sbjct: 122 SYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRI 181

Query: 167 VQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           V     + +  WNA+   Y   G + QA  LF+ M  +NV +WN+MI  Y +NG      
Sbjct: 182 VATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCT 241

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           KL   M  S  MP++ T ++IL++                                  ++
Sbjct: 242 KLFCEMQSSGLMPDQVTISNILSA----------------------------------YF 267

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G+   ++ A   F  ++ KD V WT M++  + +G       LF  ML    +PD  T
Sbjct: 268 QCGY---IDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFT 324

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
              V+S C+    + +G+      +  +G        S L D+  + G+  +A  V  +M
Sbjct: 325 ISSVVSSCARLASLCQGQAVHG-KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRM 383



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 27/263 (10%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
           T+ +   G + +A  LFD M   + VS  SMI+ +L+N        LF  M  S    + 
Sbjct: 197 TNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQ 256

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V  S ++  Y + G +DEA K F EI E +   WT+++ G  +  + ++   LF  M   
Sbjct: 257 VTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREML-- 314

Query: 119 LKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L+NV     + ++VV  CA    + + + +    +  G++                  D+
Sbjct: 315 LENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDH-----------------DL 357

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  +A++  Y   G  A A  +F  M  RNV +WN+MI  YA+NG +  A+ L   M   
Sbjct: 358 LVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHE 417

Query: 235 RFMPNETTCTSILTSC--EGMLE 255
              P+  T   +L++C   G++E
Sbjct: 418 NLKPDNITFVGVLSACMHAGLVE 440


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 237/477 (49%), Gaps = 38/477 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +++I+ Y  +G  D A +VF  +   +V SW ++I+ +      D+   LF  M +K   
Sbjct: 212 NSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVK 271

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL------------------ 161
            NV++  +V+  CA       LE   W  +C+ +E N  T+                   
Sbjct: 272 PNVITMVSVLSACAKK---IDLEFGRW--ICSYIENNGFTEHLILNNAMLDMYVKCGCIN 326

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A++ F +M  KDIV+W  M+  +   GN  +A  +F+ MP +    WNA+I  Y +NG 
Sbjct: 327 DAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGK 386

Query: 221 EGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
              A+ L + M  S+   P+E T    L +   +      H + + +   ++  +   C 
Sbjct: 387 PRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYI---KKHDINLNCH 443

Query: 280 CHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                 D   +  ++N A   F  +E KDV  W+AMI A + +G G     LF+ ML++ 
Sbjct: 444 LATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAY 503

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KP+ +TF  +L  C+HAGLV +G + F  M   YG  P+ +HY C+ DI  RAG +++A
Sbjct: 504 IKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKA 563

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
              + KMP       V GALLGAC  HG+V +A+   + L+EL+P + GA+VL +N++A 
Sbjct: 564 ASFIEKMPI-PPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAK 622

Query: 459 RGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
            G+W++ + +RK M +  VKK    S I+V G  H  L      P  +  Y  L E+
Sbjct: 623 AGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEI 679



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 29/274 (10%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           F   G   +A  LF EM     +P+ ++  S+++   +  DL     +   +  +    +
Sbjct: 249 FALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEH 308

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           ++  +AM+D YVK G +++A+ +F+++ E ++ SWT+++ G+ K    DE   +FD MP 
Sbjct: 309 LILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPH 368

Query: 118 KLKNVVSWTTVVLGCAHNG-------LIAKL---------EVISWTTMCTGLERNAMTKL 161
           K     +W  ++     NG       L  ++         EV     +C   +  A+   
Sbjct: 369 KW--TAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAI-DF 425

Query: 162 AREYFVQMPNKDIV----AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
                V +   DI        +++  Y   GN+ +A E+F+ + +++V+ W+AMI   A 
Sbjct: 426 GHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAM 485

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            G   AA+ L + M ++   PN  T T+IL +C 
Sbjct: 486 YGQGKAALDLFSSMLEAYIKPNAVTFTNILCACN 519



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 176/455 (38%), Gaps = 102/455 (22%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLKNVV 123
           A+ VF++I + N+Y W +LI GY  +    +   +F  M             P   K   
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
               + LG   +G++ K  + S                           D+   N++I  
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSS---------------------------DLFILNSLINF 217

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y  +G    A  +F  MP ++V +WNAMI+ +A  G    A+ L   M      PN  T 
Sbjct: 218 YGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITM 277

Query: 244 TSILTSCEGMLENMLAHALAIRL---GFEQETSLT-------YKCTCHYVFWDWGFQLDV 293
            S+L++C   ++      +   +   GF +   L         KC C            +
Sbjct: 278 VSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC------------I 325

Query: 294 NSARLAFERLEAKDVVSWT-------------------------------AMILAYSNHG 322
           N A+  F ++  KD+VSWT                               A+I AY  +G
Sbjct: 326 NDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNG 385

Query: 323 HGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
                  LF  M L    KPDE+T +  L   +  G ++ G    ++  + +        
Sbjct: 386 KPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGH-WIHVYIKKHDINLNCHL 444

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE- 440
            + L D+  + G + +AM V   +    +D  V  A++GA  ++G  + A  +   ++E 
Sbjct: 445 ATSLLDMYAKCGNLNKAMEVFHAV--ERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEA 502

Query: 441 -LQPSS-SGAYVLSANVHAARGEWDEFAQVRKKME 473
            ++P++ +   +L A  HA  G  +E  Q+ ++ME
Sbjct: 503 YIKPNAVTFTNILCACNHA--GLVNEGEQLFEQME 535



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 21/261 (8%)

Query: 180 MITAYV--DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRF 236
           ++TAY       +  A  +FN +PQ N++ WN +I  YA +  P  + +  L+++     
Sbjct: 110 LLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSE 169

Query: 237 MPNETTCTSILTSCEGM----LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            PN+ T   +  +   +    L ++L H + I+     +  +       Y     G    
Sbjct: 170 FPNKFTFPFLFKAASRLKVLHLGSVL-HGMVIKASLSSDLFILNSLINFY-----GSSGA 223

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            + A   F  +  KDVVSW AMI A++  G   +   LF  M     KP+ IT V VLS 
Sbjct: 224 PDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSA 283

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+    +E GR   + +    GF       + + D+  + G + +A  + +KM   E+D 
Sbjct: 284 CAKKIDLEFGRWICSYIENN-GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMS--EKDI 340

Query: 413 VVLGALLGACRLHGDVRMADY 433
           V    +L      G  ++ +Y
Sbjct: 341 VSWTTMLD-----GHAKLGNY 356


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 265/521 (50%), Gaps = 36/521 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
            G+++ A  +F +++ PD VS  ++I   + +     A  L   M  S  + N+   S+ 
Sbjct: 231 AGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSA 290

Query: 65  IDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +      G  +  R++   + +     ++++   L+  Y K   +D+ RR +D MP K  
Sbjct: 291 LKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK-- 348

Query: 121 NVVSWTTVVLGCAHNG-------LIAKL--EVISW--TTMCTGLER----NAMTKLAREY 165
           ++++W  ++ G +  G       L +K+  E I +  TT+ T L+      A+    + +
Sbjct: 349 DIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIH 408

Query: 166 FVQMPN---KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + + +    D    N+++  Y    ++ +AS++F      ++  + +MI  Y++ G   
Sbjct: 409 TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGE 468

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCT 279
            A+KL   M  +   P+   C+S+L +C  +    +    H  AI+ GF  +   +    
Sbjct: 469 EALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLV 528

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          +  A  AF  +  + +VSW+AMI  Y+ HGHG +  RLF +ML+ G 
Sbjct: 529 NMYAKCG-----SIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGV 583

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            P+ IT V VL  C+HAGLV +G++ F  M   +G KP  EHY+C+ D+L R+G++ EA+
Sbjct: 584 PPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAV 643

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            +V+ + P E D  V GALLGA R+H ++ +     + L +L+P  SG +VL AN++A+ 
Sbjct: 644 ELVNSI-PFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASA 702

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           G W+  A+VRK M + +VKK    S IE+K K +T +   R
Sbjct: 703 GMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDR 743



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 160/367 (43%), Gaps = 34/367 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSW 125
           Y K  R   ARK+ DE  E +V SW+SL+SGY +   V+E   +F+ M  L +K N  ++
Sbjct: 26  YSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTF 85

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +V+  C+    +     +    + TG E +                     N ++  Y 
Sbjct: 86  PSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA-----------------NTLVVMYA 128

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G +  +  LF  + +RNV +WNA+   Y ++   G A+ L   M +S  MPNE + + 
Sbjct: 129 KCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISI 188

Query: 246 ILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           IL +C G+ E  L    H L +++G + +     + + + +   +    ++  A   F+ 
Sbjct: 189 ILNACAGLQEGDLGRKIHGLMLKMGLDLD-----QFSANALVDMYSKAGEIEGAVAVFQD 243

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +   DVVSW A+I     H        L   M  SGT+P+  T    L  C+  G  E G
Sbjct: 244 IAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELG 303

Query: 363 RKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           R+   L S        ++ ++   L D+  +   + +A R    MP  ++D +   AL+ 
Sbjct: 304 RQ---LHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP--KKDIIAWNALIS 358

Query: 421 ACRLHGD 427
                GD
Sbjct: 359 GYSQCGD 365



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 15/253 (5%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N ++T Y        A +L +   + +V +W++++  Y +NG    A+ + N M      
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79

Query: 238 PNETTCTSILTSCEGMLE-NM--LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            NE T  S+L +C    + NM    H +A+  GFE +  +       Y     G    ++
Sbjct: 80  CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYA--KCGL---LD 134

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            +R  F  +  ++VVSW A+   Y       +   LF  M++SG  P+E +   +L+ C 
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC- 193

Query: 355 HAGLVEK--GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            AGL E   GRK   LM +  G        + L D+  +AG+++ A+ V   +     D 
Sbjct: 194 -AGLQEGDLGRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA--HPDV 249

Query: 413 VVLGALLGACRLH 425
           V   A++  C LH
Sbjct: 250 VSWNAIIAGCVLH 262



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 67/264 (25%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR------- 56
           +G    + EA+K+F+E +  D V+  SMIT + +  D  +A  L+  M ++         
Sbjct: 430 YGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFIC 489

Query: 57  ------------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         +I A +++++ Y K G +++A + F EI  
Sbjct: 490 SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPN 549

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLI--- 138
             + SW+++I GY +     E  RLF++M     P    N ++  +V+  C H GL+   
Sbjct: 550 RGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVP---PNHITLVSVLCACNHAGLVNEG 606

Query: 139 ----AKLEVI--------SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAY- 184
                K+EV+         +  M   L R+     A E    +P   D   W A++ A  
Sbjct: 607 KQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAAR 666

Query: 185 ----VDAGNMAQASELFNLMPQRN 204
               ++ G  A A  LF+L P+++
Sbjct: 667 IHKNIELGQKA-AKMLFDLEPEKS 689


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 152/516 (29%), Positives = 255/516 (49%), Gaps = 57/516 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQP-DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
           + F   G +  A KLFD +  P +     +MI  +    +  +A A +  M   QR +  
Sbjct: 74  ASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYP 133

Query: 61  E----SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVD-EGRRL 111
                + +     K   V E ++   ++    +E  V+SW SL+  Y K  +V    RR+
Sbjct: 134 NDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRV 193

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           FD+                       I   +V+SW  +  G  ++     AR  F +MP 
Sbjct: 194 FDK-----------------------IEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPE 230

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +D+V+W  M+  Y DAG +++AS LF+ MP+RN+ +W+A+I  Y + G    A++L   M
Sbjct: 231 RDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEM 290

Query: 232 FQSRFMPNETTCTSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKCTCH 281
             ++   +E   T++L++C       +G   +M      I++     T+L     KC   
Sbjct: 291 QVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCG-- 348

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      ++ A   F+    K V  W++MI   + H  G +   LFA+M++ G +P
Sbjct: 349 ----------RIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEP 398

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            EIT++ +L+ C+H+GLV+ G + FN M      KPR +HY C+ D+L RAG + +A RV
Sbjct: 399 SEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRV 458

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           V  MP  + D  +  ALL AC+LH +V + + +G  LI+++P +   YVL +NV+AA   
Sbjct: 459 VETMPV-KADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNR 517

Query: 462 WDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
           WD   ++R++M+ R ++K    S IE+ G  H  ++
Sbjct: 518 WDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVS 553


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 227/425 (53%), Gaps = 53/425 (12%)

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164
           VD+ R++F++MP    NV+SWT ++     +G                       K A E
Sbjct: 11  VDDSRKVFEQMPEH--NVMSWTAIITAYVQSG--------------------ECDKEAIE 48

Query: 165 YFVQMPNKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
            F +M +  +    N++I+ Y  +G M  A + F+++ ++N+ ++NA++D YA+N     
Sbjct: 49  LFCKMISASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 108

Query: 224 AMKLLNLMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280
           A  L N +  +    +  T  S+L+   S   M +    H   ++ G++     + +C C
Sbjct: 109 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-----SNQCIC 163

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           + +   +    ++ +A   F  +E ++V+SWT+MI  ++ HG   +   +F +ML++GTK
Sbjct: 164 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 223

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+EIT+V VLS CSH G++ +G+K FN M + +G  PR EHY+C+ D+L R+G + EAM 
Sbjct: 224 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 283

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            ++ MP    D +V   LLGACR+HG+  +  +  E ++E +P    AY+L +N+HA+ G
Sbjct: 284 FINSMPLMA-DALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAG 342

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH--------------------TLLAPMR 499
           +W +  ++RK M ER + K A  S IEV+ + H                     L + ++
Sbjct: 343 QWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 402

Query: 500 EMGYV 504
           EMGY+
Sbjct: 403 EMGYI 407



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 135/258 (52%), Gaps = 23/258 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPK-AEALFRAMPESQRNIVAESAMID 66
           G V ++ K+F++M + + +S  ++IT ++++ +  K A  LF  M  +  N V  S +I 
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNS-LIS 67

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
            Y ++GR+++ARK FD ++E N+ S+ +++ GY K  + +E   LF+ +      + ++T
Sbjct: 68  MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 127

Query: 127 --TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
             +++ G A  G + K E I    +  G + N                     NA+I+ Y
Sbjct: 128 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCI-----------------CNALISMY 170

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              GN+  A ++FN M  RNV +W +MI  +A++G    A+++ + M ++   PNE T  
Sbjct: 171 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 230

Query: 245 SILTSCE--GMLENMLAH 260
           ++L++C   GM+     H
Sbjct: 231 AVLSACSHVGMISEGQKH 248



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIV 59
           S +   G ++ A ++F+EM   + +S  SMIT F ++    +A  +F  M E  ++ N +
Sbjct: 168 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 227

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDR 114
              A++      G + E +K F+ +Y+ +     +  +  ++    ++  + E     + 
Sbjct: 228 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 287

Query: 115 MPLKLKNVVSWTTVVLGCAHNG 136
           MPL + + + W T++  C  +G
Sbjct: 288 MPL-MADALVWRTLLGACRVHG 308


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 255/534 (47%), Gaps = 73/534 (13%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQR--NIVAE 61
           V  A ++FDEM Q   VS  +M++ + R   + +A +L + M      P +    +I++ 
Sbjct: 97  VASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSG 156

Query: 62  SAMIDG---------------------------------YVKAGRVDEARKVFDEIYEGN 88
            + +D                                  YV+   +DEARKVFD + E +
Sbjct: 157 YSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKS 216

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAH-NGLIAKLEVIS 145
           + SWT++I GY K     E   LF +M  +   +  V +  ++ GC     L+    V S
Sbjct: 217 IISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHS 276

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
               C   E++ +                   N +IT Y   GN+  A  +F+L+ ++++
Sbjct: 277 LVLKCGCNEKDPVE------------------NLLITMYAKCGNLTSARRIFDLIIEKSM 318

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
            +W +MI  Y   G  G A+ L   M ++   PN  T  +++++C  +    +   +   
Sbjct: 319 LSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEY 378

Query: 266 L---GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           +   G E +  +  + +  +++   G    +  AR  FER+  KD+  WT+MI +Y+ HG
Sbjct: 379 IFLNGLESDQQV--QTSLIHMYSKCG---SIVKAREVFERVTDKDLTVWTSMINSYAIHG 433

Query: 323 HGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
            G +   LF +M  + G  PD I +  V   CSH+GLVE+G K F  M + +G  P  EH
Sbjct: 434 MGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEH 493

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
            +CL D+L R GQ+  A+  +  MPP  +   V G LL ACR+HG+V + +    RL++ 
Sbjct: 494 CTCLIDLLGRVGQLDLALNAIQGMPPDVQAQ-VWGPLLSACRIHGNVELGELATVRLLDS 552

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTL 494
            P SSG+YVL AN++ + G+W E   +R  M+ + + K + +SQ+EV    HT 
Sbjct: 553 SPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTF 606



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 171/376 (45%), Gaps = 24/376 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +   ++A++D Y K   V  AR+VFDE+ + +V SW +++S Y +   +D+   L   
Sbjct: 78  QADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKE 137

Query: 115 M-PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           M  L  +   S    +L    N    +  ++  +  C       + KL   Y       +
Sbjct: 138 MWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHC------CLIKLGIVYL------E 185

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N+++  YV    M +A ++F+LM ++++ +W  MI  Y + G    A  L   M  
Sbjct: 186 VSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQH 245

Query: 234 SRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
                +     ++++ C  + + +LA   H+L ++ G  ++  +       Y        
Sbjct: 246 QSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCG---- 301

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++ SAR  F+ +  K ++SWT+MI  Y + GH  +   LF RM+++  +P+  T   V+
Sbjct: 302 -NLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVV 360

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+  G +  G++    +    G +   +  + L  +  + G + +A  V  ++   ++
Sbjct: 361 SACADLGSLSIGQEIEEYIFLN-GLESDQQVQTSLIHMYSKCGSIVKAREVFERVT--DK 417

Query: 411 DHVVLGALLGACRLHG 426
           D  V  +++ +  +HG
Sbjct: 418 DLTVWTSMINSYAIHG 433



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENML 258
           +R+++TWN MI     NG     + + + M  S    N  T   +L +C  +       +
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTM 67

Query: 259 AHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            H   ++LGF+ +T        +  KC+             V SAR  F+ +  + VVSW
Sbjct: 68  LHGHVLKLGFQADTFVQTALVDMYSKCS------------HVASARQVFDEMPQRSVVSW 115

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
            AM+ AYS      Q   L   M   G +P   TFV +LS  S+
Sbjct: 116 NAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSN 159



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S R +F R     + +W  MI   +N+G   Q   +++ M  SG   + +T+  +L  C+
Sbjct: 2   SLRPSFRR----SLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACA 57

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           +   ++ G      + +  GF+      + L D+  +   V  A +V  +MP  +R  V 
Sbjct: 58  NLPSIQHGTMLHGHVLK-LGFQADTFVQTALVDMYSKCSHVASARQVFDEMP--QRSVVS 114

Query: 415 LGALLGA 421
             A++ A
Sbjct: 115 WNAMVSA 121


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 235/456 (51%), Gaps = 24/456 (5%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           + I   +A++  +  AG + ++R+ F E+ + NV SW ++I GY +A +V E   LF  M
Sbjct: 147 QQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEM 206

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG--LER---NAMTKL------- 161
             +  L +V +  +++  C+  G +    ++    + +G  ++R   NA+  +       
Sbjct: 207 RHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDL 266

Query: 162 --AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
             A   F  MP K++V W +M+ A    G++    + F  MP+RN+ +WNAMI  Y + G
Sbjct: 267 WMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCG 326

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYK 277
                + L N M      P+E T   +L++C   G L +       +R  F  +  +T  
Sbjct: 327 RLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNF-NDPGVTLL 385

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
            +   ++   G    V++A   F  +  K+V+SW  +I A + HG   +    F  M+  
Sbjct: 386 NSLLDMYARCG---QVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSD 442

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
              PDEITFVG+LS CSH GL+E G   F  M+R Y  +P  EHY C+ D+L R G + +
Sbjct: 443 AFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAK 502

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ ++  M   + D VV GALLGACR+HG+V +   + ++L+EL+  + G +VL  N+  
Sbjct: 503 AVNLIKDMSI-KPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFY 561

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
              +W++  ++RK M E+  KK    S IEVK   H
Sbjct: 562 ETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIH 597



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 165/410 (40%), Gaps = 51/410 (12%)

Query: 48  FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
           F  +      ++A    +    + G +  AR++FD I E + + + +L+  Y  +    E
Sbjct: 38  FSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQE 97

Query: 108 GRRLFD------------RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL-- 153
             RL               +P  LK   +   V    A +G++ KL  +    +   L  
Sbjct: 98  ALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLH 157

Query: 154 --ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
                   + +R +F +M ++++V+WN MI  Y  AG +++A  LF  M  +        
Sbjct: 158 FHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQ-------- 209

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-----LENMLAHALAIRL 266
                  G       L++L+F      N       L  C  +     ++ +L +AL    
Sbjct: 210 -------GLLADVFTLVSLLFACSSEGNLE--VGRLVHCHMLVSGSRVDRILGNALLDMY 260

Query: 267 GFEQETSLTYKC-----TCHYVFWDWGF-----QLDVNSARLAFERLEAKDVVSWTAMIL 316
           G   +  + ++C       + V W            V++ R  FE++  +++VSW AMI 
Sbjct: 261 GKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMIS 320

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            Y   G   +   L+ RM   G  PDE T  GVLS C   G +  G K  +   R     
Sbjct: 321 CYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG-KMIHCYVRDNFND 379

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           P     + L D+  R GQV  A+ + ++MP   ++ +    ++GA  +HG
Sbjct: 380 PGVTLLNSLLDMYARCGQVDTAIGLFTEMP--NKNVISWNVIIGALAMHG 427



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 74/294 (25%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G +  A + FD M   + V+  SM+    ++  +      F  MPE  RNIV+ +A
Sbjct: 260 YGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPE--RNIVSWNA 317

Query: 64  MIDGYVKAGRVDEARKVF---------------------------------------DEI 84
           MI  YV+ GR+ E   ++                                       D  
Sbjct: 318 MISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNF 377

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +  V    SL+  Y +  QVD    LF  MP   KNV+SW  ++   A +G  A+  V 
Sbjct: 378 NDPGVTLLNSLLDMYARCGQVDTAIGLFTEMP--NKNVISWNVIIGALAMHGR-AQETVT 434

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE--------L 196
            + TM +            + F    + D + +  +++A    G + +A E        +
Sbjct: 435 FFRTMVS------------DAF----SPDEITFVGLLSA-CSHGGLLEAGEYYFEAMARV 477

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +N+ P+  V  +  M+D   R G    A+ L+  M      P+     ++L +C
Sbjct: 478 YNVEPE--VEHYGCMVDLLGRRGHLAKAVNLIKDM---SIKPDVVVWGALLGAC 526



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 14/195 (7%)

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ-LDVNSARLAFERLE 304
           +L  C  +      HA  +  GF   +S+  +    Y     G +   +  AR  F+R+ 
Sbjct: 16  LLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIP 75

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
             D   +  ++ AYSN     +  RL   +L+ G  P+E T   VL  C+    VE    
Sbjct: 76  EPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALA 135

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG---- 420
              ++ +  GF  +    + L      AG ++++ R   +M   +R+ V    ++G    
Sbjct: 136 AHGVVVK-LGFVQQIFVANALLHFHASAGSLRDSRRFFGEMA--DRNVVSWNTMIGGYAQ 192

Query: 421 ------ACRLHGDVR 429
                 AC L G++R
Sbjct: 193 AGEVSEACALFGEMR 207


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 264/527 (50%), Gaps = 48/527 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEA----LFRAMPE 53
           S +   G ++E  +L   M     +PD  +  S+++       L   +     + RA  E
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLE 279

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              +I  E+++I  Y+K G V+ A ++F+ +   +V SWT++ISG  +    D    +F 
Sbjct: 280 QDSHI--ETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFR 337

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK- 172
           RM   LK+ V  +T  +              S    C  L    +      Y ++   K 
Sbjct: 338 RM---LKSRVMPSTATIA-------------SVLAACAELGSFPLGTSVHGYILRQRIKL 381

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI + N+++T Y   G++ Q+  +F+ M +R++ +WNA++  +A+NG    A+ L N M 
Sbjct: 382 DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR 441

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ-- 290
           ++R  P+  T  S+L +C        A   A+  G      +T  C    +  D      
Sbjct: 442 KARQRPDSITVVSLLQAC--------ASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 291 ----LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                D+ SA+  F+R+  +D+VSW+++I  Y +HG G    R+++  L +G +P+ + +
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +LS CSH GLV++G   F+ M++ +G +PR EH +C+ D+L RAG+V+EA     +M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P +    VLG LL ACR  G+V + D +   ++ L+P+++G YV  A+ +A+   WD   
Sbjct: 614 P-KPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVG 672

Query: 467 QVRKKMER-RVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           +V  +M+   +KK+  +S IE+ G   T        P  E   +VLK
Sbjct: 673 EVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIMLVLK 719



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 155/363 (42%), Gaps = 33/363 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++I+ Y K G    ARKVFD + + NV  WT++I  Y +A + D    +++ M  + + 
Sbjct: 87  TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM--RRQG 144

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           +   +  +LG     L +  L+ +    +  G                    D+   N+M
Sbjct: 145 IQPSSVTMLGLLSGVLELVHLQCLHACVIQYGF-----------------GSDVALANSM 187

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G +  A  LF LM  R+V +WN+++  YA+ G     ++LL  M      P++
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 241 TTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            T  S L S   M   +    + H   +R G EQ++ +       Y+        +VNSA
Sbjct: 248 QTFGS-LVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCG-----NVNSA 301

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FE +  KDV+SWTAMI     +        +F RMLKS   P   T   VL+ C+  
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G    G      + R    K      + L  +  + G ++++  V  +M    RD V   
Sbjct: 362 GSFPLGTSVHGYILRQR-IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS--RRDIVSWN 418

Query: 417 ALL 419
           A++
Sbjct: 419 AIV 421



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 20/293 (6%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            ++I  Y   G+   A ++F+ M  RNV  W  MI  Y R G    A  + N+M +    
Sbjct: 87  TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ 146

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK-----CTCHYVFWDWGFQLD 292
           P+  T   +L+    ++     HA  I+ GF  + +L        C C            
Sbjct: 147 PSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCG----------R 196

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V  A+  FE ++A+DV+SW +++  Y+  G+  +V +L  RM   G +PD+ TF  ++S 
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            +    +  G+     + RA G +  +   + L  +  + G V  A R+   M    +D 
Sbjct: 257 AAMQSKLGVGKMVHGHILRA-GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM--MHKDV 313

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           +   A++     +    MA  +  R+++ +   S A +  A+V AA  E   F
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATI--ASVLAACAELGSF 364


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 238/481 (49%), Gaps = 38/481 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           ++  S ++  Y   G + +A+KVF  + + N   + SL+ G      +++  +LF  M  
Sbjct: 174 LLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME- 232

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTGLERNAMT 159
             K+ VSW  ++ G A NGL AK  +  +  M                  C GL      
Sbjct: 233 --KDSVSWAAMIKGLAQNGL-AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEG 289

Query: 160 KLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           K      ++   +D I   +A+I  Y     +  A  +F+ M Q+NV +W AM+  Y + 
Sbjct: 290 KQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT 349

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT 275
           G    A+K+   M +S   P+  T    +++C     + E    H  AI  G     +++
Sbjct: 350 GRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVS 409

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                 Y     G   D++ +   F  +  +D VSWTAM+ AY+  G   +  +LF +M+
Sbjct: 410 NSLVTLY-----GKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMV 464

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G KPD +T  GV+S CS AGLVEKG++ F LM+  YG  P   HYSC+ D+  R+G++
Sbjct: 465 QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRL 524

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           +EAMR ++ M P   D +    LL ACR  G++ +  +  E LIEL P     Y L +++
Sbjct: 525 EEAMRFINGM-PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSI 583

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           +A++G+WD  AQ+R+ M E+ VKK    S I+ KGK H+  A     P  +  Y  L+E+
Sbjct: 584 YASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEEL 643

Query: 510 D 510
           +
Sbjct: 644 N 644



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 184/436 (42%), Gaps = 82/436 (18%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           + RA+P  +  +   + ++  Y        AR+VFD I + N++SW +L+  Y KA  + 
Sbjct: 32  IIRALPYPETFLY--NNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLIS 89

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCT 151
           E    F+++P   ++ V+W  ++ G + +GL+               A L  ++  TM  
Sbjct: 90  EMESTFEKLP--DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147

Query: 152 GLERNAMTKL-----------------------------------AREYFVQMPNKDIVA 176
               N    L                                   A++ F  + +++ V 
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +N+++   +  G +  A +LF  M + +V +W AMI   A+NG    A++    M     
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREMKVQGL 266

Query: 237 MPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQE-------TSLTYKCTC-HYVFW 285
             ++    S+L +C G+    E    HA  IR  F+           +  KC C HY   
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHY--- 323

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                     A+  F+R++ K+VVSWTAM++ Y   G   +  ++F  M +SG  PD  T
Sbjct: 324 ----------AKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
               +S C++   +E+G + F+  +   G        + L  +  + G + ++ R+ ++M
Sbjct: 374 LGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 406 PPHERDHVVLGALLGA 421
             + RD V   A++ A
Sbjct: 433 --NVRDAVSWTAMVSA 446



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 55/287 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G +++A +LF  M + D VS A+MI    +N    +A   FR M                
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 52  ---------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q +I   SA+ID Y K   +  A+ VFD + + NV 
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           SWT+++ GY +  + +E  ++F  M    ++ +      LG A    I+    +S     
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQ---RSGIDPDHYTLGQA----ISACANVSSLEEG 390

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           +     A+T     Y        +   N+++T Y   G++  ++ LFN M  R+  +W A
Sbjct: 391 SQFHGKAITSGLIHY--------VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTA 442

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           M+  YA+ G     ++L + M Q    P+  T T ++++C   G++E
Sbjct: 443 MVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 114/263 (43%), Gaps = 62/263 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RN 57
           +G TG+ +EA K+F +M +    PD  +    I+       L +          S     
Sbjct: 346 YGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHY 405

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-- 115
           +   ++++  Y K G +D++ ++F+E+   +  SWT+++S Y +  +  E  +LFD+M  
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQ 465

Query: 116 -PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
             LK  + V+ T V+  C+  GL+ K                      + YF  M ++  
Sbjct: 466 HGLK-PDGVTLTGVISACSRAGLVEK---------------------GQRYFKLMTSE-- 501

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
                                 + ++P  ++  ++ MID ++R+G    AM+ +N M   
Sbjct: 502 ----------------------YGIVP--SIGHYSCMIDLFSRSGRLEEAMRFINGM--- 534

Query: 235 RFMPNETTCTSILTSC--EGMLE 255
            F P+    T++L++C  +G LE
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLE 557



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 93/209 (44%), Gaps = 26/209 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G  G + ++T+LF+EM+  D VS  +M++ + +     +   LF  M +   + + V  
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTL 475

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYE-----GNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           + +I    +AG V++ ++ F  +        ++  ++ +I  + ++ +++E  R  + MP
Sbjct: 476 TGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               + + WTT++  C + G    LE+  W               A E  +++       
Sbjct: 536 FP-PDAIGWTTLLSACRNKG---NLEIGKW---------------AAESLIELDPHHPAG 576

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV 205
           +  + + Y   G     ++L   M ++NV
Sbjct: 577 YTLLSSIYASKGKWDSVAQLRRGMREKNV 605


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 240/491 (48%), Gaps = 34/491 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK  +A K+FD+M   +  S  +M++ F+++  L +A  +F +MPE  R++V+ + M+ G
Sbjct: 96  GKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPE--RDVVSWNTMVIG 153

Query: 68  YVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           Y + G + EA   F E+       N +S+  L++   K+RQ            L+L    
Sbjct: 154 YAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQ------------LQLNQQA 201

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
               +V G   N ++    +I     C  +E       A+  F +M  KDI  W  +I+ 
Sbjct: 202 HGQVLVAGFLSN-VVLSCSIIDAYAKCGQMES------AKRCFDEMTVKDIHIWTTLISG 254

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G+M  A +LF  MP++N  +W A+I  Y R G    A+ L   M   R  P + T 
Sbjct: 255 YAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTF 314

Query: 244 TSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           +S L    S   +      H   IR        +T      Y       +      R+ +
Sbjct: 315 SSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSK-SGSLEASERVFRICY 373

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           ++   +D V W  MI A + HG G +  ++   M+K    P+  T V +L+ CSH+GLVE
Sbjct: 374 DK---QDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVE 430

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G + F  M+  +G  P  EHY+CL D+L RAG  KE M  + +M P E D  +  A+LG
Sbjct: 431 EGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEM-PFEPDKHIWNAILG 489

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKV 479
            CR+HG+  +     E LI+L P SS  Y+L ++++A  G+W+   ++R  M +RRV K 
Sbjct: 490 VCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKE 549

Query: 480 ASFSQIEVKGK 490
            + S IE++ K
Sbjct: 550 KAVSWIEIENK 560



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 75/301 (24%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES- 54
           S +   G ++ A KLF EM + +PVS  ++I  ++R      A  LFR M      PE  
Sbjct: 253 SGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQF 312

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         + N +  S++ID Y K+G ++ + +VF   
Sbjct: 313 TFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRIC 372

Query: 85  YEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL---GCAHNGLIAK 140
           Y+  +   W ++IS   +     +  ++ D M +K +   + TT+V+    C+H+GL+  
Sbjct: 373 YDKQDCVLWNTMISALAQHGLGHKALQMLDDM-IKFRVHPNRTTLVVILNACSHSGLVE- 430

Query: 141 LEVISWTTMCT----------------------GLERNAMTKLAREYFVQMPNKDIVAWN 178
            E + W    T                      G  +  M+K+    F   P+K I  WN
Sbjct: 431 -EGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPF--EPDKHI--WN 485

Query: 179 AMITAYVDAGN----MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           A++      GN       A EL  L P+ +   +  +   YA +G      KL  +M + 
Sbjct: 486 AILGVCRIHGNEELGKKAAEELIKLDPESSA-PYILLSSIYADHGKWELVEKLRGIMKKR 544

Query: 235 R 235
           R
Sbjct: 545 R 545


>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
 gi|223946981|gb|ACN27574.1| unknown [Zea mays]
 gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
          Length = 499

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 224/435 (51%), Gaps = 41/435 (9%)

Query: 45  EALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQ 104
            A  R +P + R  +  + ++  +  A R+  AR         +VY   + +S YF A  
Sbjct: 80  HACARVVPTTSRYPLTVTGLL--HSLALRLGHAR---------DVYVANAAVSSYFAASD 128

Query: 105 VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164
           V    RLF  +   + +VV+WTT+V G A  G               GL R      AR 
Sbjct: 129 VASADRLFAEVSTDVADVVTWTTMVTGHASAG---------------GLGR------ARH 167

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           +F  M  +++V+WNAM++AY  AG + +A +LF+ MP RN  TW+ MI     +G    A
Sbjct: 168 FFDAMSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEA 227

Query: 225 MKLL-NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
           + L  +++  S  +PNE    S++++C  M    L H   +    EQE            
Sbjct: 228 LGLFGDMVHSSGIVPNEPALVSVVSACAQMRS--LEHGAWVHAYAEQELQGAMSVVLASA 285

Query: 284 FWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
             D +G    ++SA   F  +  +++ SW AMI   + +G   Q   L  +M   G +P+
Sbjct: 286 IIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPN 345

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           +ITF+G+LS C+H+GLV +GR+ F+ M   +G +P  +HY  + D++ R+G+V EA+  V
Sbjct: 346 DITFIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFV 405

Query: 403 SKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
             MP  PH     + GAL  AC++HG V + + + ++LIEL+P     Y+L +N++ +  
Sbjct: 406 KSMPVEPHPG---LWGALASACKMHGKVELGEEVAKKLIELEPRHGSRYILLSNLYGSVN 462

Query: 461 EWDEFAQVRKKMERR 475
            WD+ A VRK ++RR
Sbjct: 463 RWDDMASVRKILKRR 477



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 24/240 (10%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           ++ +    D+  A+ LF  +     ++V  + M+ G+  AG +  AR  FD + E NV S
Sbjct: 120 VSSYFAASDVASADRLFAEVSTDVADVVTWTTMVTGHASAGGLGRARHFFDAMSERNVVS 179

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI------------- 138
           W +++S Y +A  + E R LFD MP   +N  +W+ ++ G   +G               
Sbjct: 180 WNAMLSAYARAGMLTEARDLFDAMP--TRNAATWSCMISGLVLSGRCWEALGLFGDMVHS 237

Query: 139 --------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
                   A + V+S       LE  A      E  +Q     ++A +A+I  Y   G +
Sbjct: 238 SGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLA-SAIIDMYGKCGGI 296

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A  +F  MP RN+++WNAMI   A NG E  A+ LL  M      PN+ T   +L++C
Sbjct: 297 HSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPNDITFIGLLSAC 356


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 153/528 (28%), Positives = 250/528 (47%), Gaps = 61/528 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----------- 55
           +G +  A  +F+++  P   +C S+I  +  N +LP+   LF  +   Q           
Sbjct: 87  SGSLPYARLVFNQIPNPTTFTCNSIIRGY-TNKNLPRQAILFYQLMMLQGLDPDRFTFPS 145

Query: 56  ------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                    +   ++ +++ Y   G +  ARKVFD++   +V S
Sbjct: 146 LFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS 205

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           W ++I  Y +     E  +LF RM +     N ++   V+  CA +  +   + +     
Sbjct: 206 WATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYID 265

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
            TG+  +                  V  +A++  Y   G    A +LFN MP++N++ WN
Sbjct: 266 ETGIGFHT-----------------VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWN 308

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
            MI+ +  +     A+ L N M  S    ++ T  S+L +C  +    L   L + +  E
Sbjct: 309 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE 368

Query: 270 Q-ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           + E  +        ++   G    + SA   F+ +  KDV++WTA+I+  +  G G +  
Sbjct: 369 KIEVDVALGTALVDMYAKCG---SIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 425

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M  S  KPD ITFVGVL+ CSHAGLV +G   FN M   YG +P  EHY C+ D+
Sbjct: 426 ELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM 485

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG++ EA  ++  M P   D+ VL  LL ACR+HG++ +A+   ++LIEL P + G 
Sbjct: 486 LGRAGRIAEAEDLIQNM-PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGT 544

Query: 449 YVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           YVL +N++++   W+   ++R+ M ER +KK    S IEV G  H  +
Sbjct: 545 YVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFV 592



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 10/233 (4%)

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           IVA+ A+     D+G++  A  +FN +P    +T N++I  Y        A+    LM  
Sbjct: 78  IVAFCAL----HDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMML 133

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               P+  T  S+  SC  + E    H  + +LGF  +  +  + T   ++ + G  +  
Sbjct: 134 QGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYI--QNTLMNMYSNCGCLV-- 189

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            SAR  F+++  K VVSW  MI AY+      +  +LF RM  +  KP+EIT V VL+ C
Sbjct: 190 -SARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTAC 248

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +  +E  ++    +    G        S L D+  + G    A  + +KMP
Sbjct: 249 ARSRDLETAKQVHKYIDET-GIGFHTVLTSALMDVYCKCGCYPLARDLFNKMP 300


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 253/516 (49%), Gaps = 35/516 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAESAMI 65
           GK+ EA  +F  M   D +S  SM++ F++N    +A   +  M ++ +  ++VA  ++I
Sbjct: 331 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 390

Query: 66  DGYVKAGRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               ++G      ++         + ++    SL+  Y K   +     +FD+MP K  +
Sbjct: 391 AASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK--D 448

Query: 122 VVSWTTVVLGCAHNGLIAK---------LEVISWTTM--------CTGLERNAMTKLARE 164
           VVSWTT++ G A NG  ++         LE I    M        C+GL+  +  K    
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 508

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           Y ++    D+V  N ++  Y + GN+  A+ +F L+  ++V +W +MI  Y  NG    A
Sbjct: 509 YIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 568

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCH 281
           ++L +LM ++   P+  +  SIL++   +    +    H   IR GF  E SL       
Sbjct: 569 LELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 628

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y          +  +R  F  +  KD+V WT+MI AY  HG G     LF RM      P
Sbjct: 629 YARCG-----TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAP 683

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D I FV VL  CSH+GL+ +GR+    M   Y  +P  EHY+CL D+L RA  ++EA + 
Sbjct: 684 DHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQF 743

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           V  M   E    V  ALLGAC++H +  + +   ++L+E+ P + G YVL +NV++A   
Sbjct: 744 VKGMEV-EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERR 802

Query: 462 WDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           W +   VR +M+   +KK    S IEV  K HT +A
Sbjct: 803 WKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMA 838



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A +LF+ MP + ++TWNAMI  Y  NG    +++L   M  S    +
Sbjct: 120 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 179

Query: 240 ETTCTSILTSCEGMLEN----MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
             T   IL +C G+L++       H LAI+ G+     +       Y   +     D+N 
Sbjct: 180 ACTFPCILKAC-GLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN-----DLNG 233

Query: 296 ARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           AR  F+R+ E +DVVSW +MI AYS++G   +  RLF  M K+   P+  TFV  L  C 
Sbjct: 234 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 293

Query: 355 HAGLVEKG 362
            +  +++G
Sbjct: 294 DSSFIKQG 301



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 171/408 (41%), Gaps = 59/408 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G + +A KLFD M      +  +MI  ++ N +   +  L+R M  S   I  ++ 
Sbjct: 124 YGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS--GIPLDAC 181

Query: 64  MIDGYVKAGRVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                +KA  + + R+   E+        Y   V+   S++  Y K   ++  R+LFDRM
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 241

Query: 116 PLKLKNVVSWTTVVLGCAHNG-------LIAKLEVISWT----TMCTGLE--------RN 156
           P K ++VVSW +++   + NG       L  +++  S      T    L+        + 
Sbjct: 242 PEK-EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 300

Query: 157 AM----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
            M    T L   Y++     ++   NA+I  Y   G M +A+ +F  M   +  +WN+M+
Sbjct: 301 GMFIHATVLKSSYYI-----NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSML 355

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE 269
             + +NG    A++  + M  +   P+     SI+ +       L  M  HA A++ G +
Sbjct: 356 SGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLD 415

Query: 270 QETSL------TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
            +  +       Y   C   + D             F+++  KDVVSWT +I  ++ +G 
Sbjct: 416 SDLQVGNSLVDMYAKFCSMKYMD-----------CIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
             +   LF  +   G   D +    +L  CS   L+   ++  + + R
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 512


>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 252/492 (51%), Gaps = 40/492 (8%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYE 86
           ++T++ +   +  A  LF  MP   RN ++ + MI G+ +    + A K+F+    E ++
Sbjct: 199 LLTLYPKAARIGDAYNLFVEMP--VRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFK 256

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG--CAHNGLIAKLEVI 144
            +  +WTSL+S + +  + ++  + F  M +    V      V    CA  G ++  + +
Sbjct: 257 PDEVTWTSLLSCHSQCGKFEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKV 316

Query: 145 SWTTMCTGLE-----RNAM---------TKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
               +  G E     RNA+          K A + F Q+ NK I +WN++IT++VDAG +
Sbjct: 317 HGFVIKGGFEECLPSRNALIHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKL 376

Query: 191 AQASELFNLMPQR--------NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            +A  LF  + +         NV TW ++I      G    +++    M  S+ + N  T
Sbjct: 377 DEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVT 436

Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
              IL+ C  +    L    H   IR        +       Y     G    +    L 
Sbjct: 437 ICCILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYT--KCGL---LREGSLV 491

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FE +  KD++SW ++I  Y  HG G +   +F RM+KSG  PD I  V VLS CSHAGLV
Sbjct: 492 FEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLV 551

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           EKGRK F  MS+ +G +P+ EHY+C+ D+L R G +KEA  +V  M P E    VLGALL
Sbjct: 552 EKGRKIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNM-PMEPKVCVLGALL 610

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KKMERRVKK 478
            +CR+H ++ +A+ I  +L  L+P  +G+Y+L +N+++A G W+E A+VR    ++ +KK
Sbjct: 611 NSCRMHKNMDIAEIIASQLRVLEPERTGSYMLLSNIYSAGGRWEESAKVRALAKKKDLKK 670

Query: 479 VASFSQIEVKGK 490
           V+  S IE+K K
Sbjct: 671 VSGSSWIELKKK 682



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 120/288 (41%), Gaps = 63/288 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  GKVK+A +LF ++      S  S+IT F                            
Sbjct: 339 YGKQGKVKDAEQLFRQIRNKGIESWNSLITSF---------------------------- 370

Query: 64  MIDGYVKAGRVDEARKVFDEIYE--------GNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                V AG++DEA  +F E+ E         NV +WTS+I G     + D     F RM
Sbjct: 371 -----VDAGKLDEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRM 425

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD-I 174
             +   V+S  +V + C               ++C  L    + +    + ++    D I
Sbjct: 426 --QFSKVLS-NSVTICCI-------------LSICAELPALNLGREIHGHVIRTSMSDNI 469

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  NA++  Y   G + + S +F  +  +++ +WN++I  Y  +G    A+ + + M +S
Sbjct: 470 LVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKS 529

Query: 235 RFMPNETTCTSILTSCE--GMLEN--MLAHALAIRLGFEQETSLTYKC 278
              P+     ++L++C   G++E    + ++++ R G E +    Y C
Sbjct: 530 GCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQE-HYAC 576



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 50/252 (19%)

Query: 150 CTGLERNAMTKLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C  L R  + +      +Q+  K+ +   N ++T Y  A  +  A  LF  MP RN  +W
Sbjct: 168 CRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYNLFVEMPVRNRMSW 227

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENML------- 258
           N MI  +++     +A+K+   M +  F P+E T TS+L SC    G  E+++       
Sbjct: 228 NVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLL-SCHSQCGKFEDVIKYFHVMR 286

Query: 259 -----------------------------AHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                                         H   I+ GFE+   L  +    +V+   G 
Sbjct: 287 MSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEE--CLPSRNALIHVY---GK 341

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK----SGTKPDEIT 345
           Q  V  A   F ++  K + SW ++I ++ + G   +   LF  + +       K + +T
Sbjct: 342 QGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVCNVKANVVT 401

Query: 346 FVGVLSDCSHAG 357
           +  V+  C+  G
Sbjct: 402 WTSVIKGCNVQG 413


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 149/450 (33%), Positives = 236/450 (52%), Gaps = 36/450 (8%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTT 127
           G +++AR++FD     ++ SW +LI GY +     E   LF RM  +   V    V+   
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233

Query: 128 VVLGCAHNGLIAKLE--------VISWTTMCTGLERNAMT---------KLAREYFVQMP 170
            V GC   G +  LE        V S    CT    NA+          ++A+  F ++ 
Sbjct: 234 AVSGC---GQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIE 290

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++ +V+W  MI  +   G M  A ++F+ MP+R+V+ WNA++  Y +      A+ L + 
Sbjct: 291 HRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHE 350

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M ++  +P+E T  ++LT+C   G LE  M  H       + ++  L +         D 
Sbjct: 351 MQEASVVPDEITMVNLLTACSQLGALEMGMWVHR------YIEKHRLVFSVALGTSLIDM 404

Query: 288 GFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
             +  ++  A   F+ +  K+ ++WTAMI   +NHGH  +    F  M++ G KPDEITF
Sbjct: 405 YAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITF 464

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +GVLS C HAGLV++GR+ F+LM   Y  + + +HYSC+ D+L RAG + EA ++V+ M 
Sbjct: 465 IGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM- 523

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P E D VV GA+  ACR+ G++ + +    +L+E+ PS SG YVL AN++A      +  
Sbjct: 524 PMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKAD 583

Query: 467 QVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           +VR  M    V+KV   S IE+ G  H  +
Sbjct: 584 KVRAMMRHLGVEKVPGCSCIELNGVVHEFI 613



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 26/234 (11%)

Query: 24  DPVSCA-----SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           D VSC      +++ ++++   L  A+++F  +    R +V+ + MI G+ K G +D+AR
Sbjct: 257 DGVSCTVRLMNALMDMYIKCGSLEMAKSVFERI--EHRTVVSWTTMIVGFAKFGLMDDAR 314

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNG 136
           KVFDE+ E +V+ W +L++GY + +Q  E   LF  M     + + ++   ++  C+  G
Sbjct: 315 KVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLG 374

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
               LE+  W        R   +              +    ++I  Y   GN+ +A  +
Sbjct: 375 ---ALEMGMWVHRYIEKHRLVFS--------------VALGTSLIDMYAKCGNIEKAIHI 417

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           F  +P++N  TW AMI   A +G    A++    M +    P+E T   +L++C
Sbjct: 418 FKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSAC 471



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 143/355 (40%), Gaps = 61/355 (17%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+   NA        G M  A  LF+  P R++ +WN +I  Y R G    A++L   
Sbjct: 157 DSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWR 216

Query: 231 MF--QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
           M    +   P+E T  + ++ C  M +  L   L    GF     ++          D  
Sbjct: 217 MVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLH---GFVDSDGVSCTVRLMNALMDMY 273

Query: 289 FQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHG------------------------H 323
            +   +  A+  FER+E + VVSWT MI+ ++  G                         
Sbjct: 274 IKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMT 333

Query: 324 GF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG-------RKTFNLM 369
           G+       +   LF  M ++   PDEIT V +L+ CS  G +E G        K   + 
Sbjct: 334 GYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVF 393

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
           S A G        + L D+  + G +++A+ +  ++P  E++ +   A++     HG   
Sbjct: 394 SVALG--------TSLIDMYAKCGNIEKAIHIFKEIP--EKNALTWTAMICGLANHGHAN 443

Query: 430 MADYIGERLIEL--QPSS-SGAYVLSANVHAAR----GEWDEFAQVRKKMERRVK 477
            A      +IEL  +P   +   VLSA  HA       E+    + +  +ER++K
Sbjct: 444 EAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMK 498



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 72/277 (25%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR------- 56
           F   G + +A K+FDEM + D     +++T +++     +A +LF  M E+         
Sbjct: 304 FAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITM 363

Query: 57  ------------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         ++   +++ID Y K G +++A  +F EI E
Sbjct: 364 VNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPE 423

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEV 143
            N  +WT++I G       +E    F  M ++L    + +++  V+  C H GL+     
Sbjct: 424 KNALTWTAMICGLANHGHANEAIEHFRTM-IELGQKPDEITFIGVLSACCHAGLV----- 477

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFN 198
                           K  RE+F  M  K      +  ++ MI     AG++ +A +L N
Sbjct: 478 ----------------KEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVN 521

Query: 199 LMP-QRNVWTWNAMIDRYARNG----PEGAAMKLLNL 230
            MP + +   W A+       G     E AAMKL+ +
Sbjct: 522 TMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEI 558


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 246/501 (49%), Gaps = 64/501 (12%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQ---------------RNIVAESAMIDGY 68
           DP    S++   LR  +LP   A+ R +  S                + IV ++  I   
Sbjct: 88  DPRYALSLLAQ-LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFV 146

Query: 69  VKAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +KA     A +  +E++          +VY   +L+  Y     +   R++FD  P +  
Sbjct: 147 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQR-- 204

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           ++VSWTT++ G    G  A+  V  +        RN+   L           D+   NA+
Sbjct: 205 DLVSWTTMIQGYVKMGF-AREGVGLYII------RNSNVNL-----------DVFVGNAL 246

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y+  G+   A ++F  MP +NV +WN+MI   A+ G    ++ +   M +    P++
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306

Query: 241 TTCTSILTSCE--GMLE-NMLAHALAIRL-----GFEQETSLTYKCTCHYVFWDWGFQLD 292
            T  ++L SC   G+LE     HA   R      GF     +     C            
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCG----------S 356

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ A   F+ +  KDV S+TAMI+  + HG G +   LF+ M K G +PDE+TFVGVL+ 
Sbjct: 357 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 416

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLVE+GRK F  MS  Y  +P+ EHY C+ D+L RAG + EA   +  M P E D 
Sbjct: 417 CSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM-PIEPDA 475

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            VLGALLGAC++HG V + + + +++ +++P   GAYVL +N++++   W +  ++RK M
Sbjct: 476 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTM 535

Query: 473 -ERRVKKVASFSQIEVKGKDH 492
            ER ++K    S IE+ G  H
Sbjct: 536 KERNLEKTPGCSSIELDGVIH 556


>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Brachypodium distachyon]
          Length = 497

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 217/410 (52%), Gaps = 31/410 (7%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           + G+VY   + +S YF A  V    RLF       K+V                   +V+
Sbjct: 107 HAGDVYIVNAAVSAYFTAADVASAERLFSDTS---KDVA------------------DVV 145

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           +WTTM  G  R    + AR +F  MP +++V+WNAM+ AY  AG +++A +LF+ M  RN
Sbjct: 146 TWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRN 205

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
             TW++M+    ++     A+++ + M     +PNE+   S++++C  +    L H + +
Sbjct: 206 AATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQL--RSLEHGVWV 263

Query: 265 RLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
               ++E   +          D +G    +++A   F  +  +++ SW +MI   + +G 
Sbjct: 264 HAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGR 323

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             Q   LF +M  +G +P++ITF+G+L  CSH+GLV++GR  FN M   +G +P  EHY 
Sbjct: 324 EMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYG 383

Query: 384 CLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
            + D+L RAG VKEA+  V  MP  PH     + GAL GAC +HG+V + + I ++LIEL
Sbjct: 384 LMVDLLGRAGLVKEAVDFVKNMPVEPHPG---LWGALAGACNIHGEVELGEEIAKKLIEL 440

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKGKD 491
           +P     Y+L +N++     W++ A VR+ ++ R  KV+  +   V G D
Sbjct: 441 EPRHGSRYILLSNIYGTSSRWEDMATVRRLIKER--KVSKGTGNAVVGND 488



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 27/242 (11%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           ++ +    D+  AE LF    +   ++V  + M+ G+ +AG V+ AR  FD + E NV S
Sbjct: 118 VSAYFTAADVASAERLFSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVS 177

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN---------------- 135
           W +++  Y  A  + E R+LFD M    +N  +W+++V G   +                
Sbjct: 178 WNAMLGAYASAGMLSEARKLFDGM--HSRNAATWSSMVTGLVQSDHCEEALRVFSDMVAR 235

Query: 136 GLIAK----LEVISWTTMCTGLERNAMTK--LAREYFVQMPNKDIVAWNAMITAYVDAGN 189
           G++      + VIS       LE        + RE    M    ++   A++  Y   G 
Sbjct: 236 GVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSM---SVILATAIVDMYGKCGC 292

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  +F  MP RN+++WN+MI   A NG E  A+ L   M  +   PN+ T   +L +
Sbjct: 293 IHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGA 352

Query: 250 CE 251
           C 
Sbjct: 353 CS 354



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 40/175 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP----------- 52
           +   G + EA KLFD M   +  + +SM+T  +++    +A  +F  M            
Sbjct: 185 YASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESIL 244

Query: 53  ---------------------------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                                          +++  +A++D Y K G +  A +VF  + 
Sbjct: 245 VSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMP 304

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
             N+YSW S+I+G     +  +   LF +M +     N +++  ++  C+H+GL+
Sbjct: 305 VRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLV 359


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 219/422 (51%), Gaps = 47/422 (11%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           + +++  T+LIS Y +   +   R++FD M     N+V+W  +V  C             
Sbjct: 138 DSHLFVGTTLISMYAECACLVFARKVFDEMIEP--NIVAWNAIVAACFR----------- 184

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
               C G+      K A + F  MP +++ +WN M+  Y  AG +  A E+F  MP ++ 
Sbjct: 185 ----CEGV------KDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDD 234

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHAL 262
            +W+ MI  +A NG    A      + +    PNE + T +L++C   G  E   + H  
Sbjct: 235 VSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGF 294

Query: 263 AIRLGFEQETSL------TY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
             + GF Q  S+      TY KC             +++ ARL F+ +  +  VSWTAMI
Sbjct: 295 VEKSGFLQIISVNNALIDTYSKCG------------NLDMARLVFDNMLRRSAVSWTAMI 342

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
              + HG+G +  RLF  M +S  KPD ITF+ +L  CSHAGLV+ G   F+ M   YG 
Sbjct: 343 AGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGI 402

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
           +P  EHY C+ D+  RAG++++A   V +MP    D +V   LLGAC +HG++ +A  + 
Sbjct: 403 EPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPND-IVWRTLLGACSIHGNLYLAGQVK 461

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
            +L EL P +SG +VL +N++A  G+W + A +R+ M  +R+KK   +S IEV    ++ 
Sbjct: 462 RQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSF 521

Query: 495 LA 496
           +A
Sbjct: 522 VA 523



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 68/258 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQRN--------- 57
           G+++ A ++F +M   D VS ++MI  F  N +   A A FR +  E  R          
Sbjct: 217 GELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVL 276

Query: 58  ---------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                      I   +A+ID Y K G +D AR VFD +   +  
Sbjct: 277 SACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAV 336

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           SWT++I+G       +E  RLF+ M    +K  + +++ +++  C+H GL+         
Sbjct: 337 SWTAMIAGMAMHGYGEEAIRLFNEMEESNIK-PDSITFISILYACSHAGLV--------- 386

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKD-----IVAWNAMITAYVDAGNMAQASELFNLMP- 201
                        L   YF +M N       I  +  M+  Y  AG + QA +    MP 
Sbjct: 387 ------------DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPI 434

Query: 202 QRNVWTWNAMIDRYARNG 219
             N   W  ++   + +G
Sbjct: 435 SPNDIVWRTLLGACSIHG 452


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 159/494 (32%), Positives = 232/494 (46%), Gaps = 65/494 (13%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           ++  Y     V  ARKVFDEI E NV     +I  Y       EG ++F  M        
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
               P  LK      T+V+G   +G   K+ + S   +  GL     +      AR    
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQ------------- 192
           +M  +D+V+WN+++  Y                       DAG MA              
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 193 --ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               ++F  M ++++ +WN MI  Y +N     A++L + M    F P+  + TS+L +C
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 251 EGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDV 308
                +  A +L  ++ G+ +   L           D   +   +  AR  FE ++++DV
Sbjct: 320 ----GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWTAMI AY   G G     LF+++  SG  PD I FV  L+ CSHAGL+E+GR  F L
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 435

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHG 426
           M+  Y   PR EH +C+ D+L RAG+VKEA R +  M   P+ER   V GALLGACR+H 
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNER---VWGALLGACRVHS 492

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           D  +     ++L +L P  SG YVL +N++A  G W+E   +R  M+ + +KK    S +
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

Query: 486 EVKGKDHTLLAPMR 499
           EV    HT L   R
Sbjct: 553 EVNRIIHTFLVGDR 566


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 227/444 (51%), Gaps = 32/444 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++  E+A++D Y K G + +A +VFD +   +V  WT++I+ Y +A +  +   LF +M 
Sbjct: 166 DLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQ 225

Query: 117 LKLKNVVSWTTVVLGCAHNGLIA-KLEVISWTTMCTGLERNAMTKLAREYFV-QMPNKDI 174
                              G +  ++  IS  +    L    M      Y V      D+
Sbjct: 226 -----------------EEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDV 268

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+++  Y   GN+ +A  +F+ M +RN  +WN+M+  Y +NG    A+ L N M  S
Sbjct: 269 SVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS 328

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              PN  T   ++++C  +    L    H   I    + +T+L       Y+        
Sbjct: 329 ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCG----- 383

Query: 292 DVNSARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
           D+++A   F   E   +DV SW  +I  Y  HGHG +   LF+RM   G +P++ITF  +
Sbjct: 384 DLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSI 443

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSHAGL+++GRK F  M++    +P  +HY+C+ D+L RAG + EA R++ K+P   
Sbjct: 444 LSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRP 502

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D  V GALL ACR+HG+  + +     L +L+P  +G YVL +N++AA  +W E   VR
Sbjct: 503 SDE-VWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVR 561

Query: 470 KKMERR-VKKVASFSQIEVKGKDH 492
           + M+ R +KK A+FS IE   + H
Sbjct: 562 QNMKSRGLKKPAAFSVIEFGTEVH 585



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 170/408 (41%), Gaps = 41/408 (10%)

Query: 68  YVKAGRVDEARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLF---DRMP 116
           Y K G +  AR +FD  +          N +   +++  Y  A +  E   L+    RM 
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           + + N  ++  V+  CA        EV+    + TG                    D+  
Sbjct: 128 VGVNNF-TYPFVLKVCASELGAVFGEVVHGQVVRTGF-----------------GSDLFV 169

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             A++  Y   G +  A E+F+ M  R+V  W AMI  Y +      A+ L   M +  F
Sbjct: 170 EAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGF 229

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           + +E T  S+ ++   + +  +A   H  A+  GF  + S+       Y         +V
Sbjct: 230 LGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCG-----NV 284

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             ARL F+R+E ++ +SW +M+  Y+ +G       LF +M  S   P+ +T + ++S C
Sbjct: 285 ERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSAC 344

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           S+ G    GRK  N +  +          + + D+  + G +  A+ + +     ERD  
Sbjct: 345 SYLGSKHLGRKLHNFVISS-KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVS 403

Query: 414 VLGALLGACRLHGDVRMADYIGERL-IE-LQPSS-SGAYVLSANVHAA 458
               L+    +HG  + A  +  R+ +E ++P+  +   +LSA  HA 
Sbjct: 404 SWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAG 451



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 58/284 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G++ +A ++FD M   D V   +MIT++ +     KA  LFR M E              
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 56  -------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++   ++++  Y K G V+ AR VFD + E N  
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SW S++SGY +  +  +   LF++M       N V+   +V  C++ G            
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLG------------ 348

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN--LMPQRNVW 206
                 ++   KL         + D    NA++  Y+  G++  A E+FN   + +R+V 
Sbjct: 349 -----SKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVS 403

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +WN +I  Y  +G    A++L + M      PN+ T TSIL++C
Sbjct: 404 SWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSAC 447



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 62/260 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G V+ A  +FD M + + +S  SM++ + +N     A +LF  M  S+            
Sbjct: 282 GNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMV 341

Query: 56  ---------------RNIVAES----------AMIDGYVKAGRVDEARKVFD--EIYEGN 88
                           N V  S          A++D Y+K G +D A ++F+  E+ E +
Sbjct: 342 SACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERD 401

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI-------- 138
           V SW  LISGY       E   LF RM ++    N +++T+++  C+H GLI        
Sbjct: 402 VSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFA 461

Query: 139 ------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK--DIVAWNAMITAYVDAGNM 190
                  + E+  +  M   L R      A     ++P++  D V W A++ A    GN 
Sbjct: 462 DMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALLLACRIHGNT 520

Query: 191 ----AQASELFNLMPQRNVW 206
                 A+ LF L P+   +
Sbjct: 521 ELGEIAANNLFQLEPEHTGY 540



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 23/253 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQR--------NVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +I  Y   G++  A  LF+             N +  N M+  YA  G    A+ L   M
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 232 FQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
            +     N  T   +L  C    G +   + H   +R GF  +  +       Y      
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCG-- 181

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              ++  A   F+R+  +DVV WTAMI  Y       +   LF +M + G   DEIT + 
Sbjct: 182 ---EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAIS 238

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           V S     G    GR   ++   A   GF       + +  +  + G V+ A  V  +M 
Sbjct: 239 VASAVGQLG---DGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRME 295

Query: 407 PHERDHVVLGALL 419
             ER+ +   ++L
Sbjct: 296 --ERNGISWNSML 306


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/466 (31%), Positives = 237/466 (50%), Gaps = 32/466 (6%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +A  LF  MPE   N+V+ + M++GY KAG VD AR++F+ + + +V SW ++I GY   
Sbjct: 454 EARRLFDRMPEV--NLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILM 511

Query: 103 RQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAH----------NGLIAKLEVISW--- 146
            ++ E   ++    R  L L  ++    +V  C            +G++ K     +   
Sbjct: 512 NRLHEALVMYRAMLRSGLALNEILV-VNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFI 570

Query: 147 -TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
            TT+        M  LA   F       + +WNA+++ ++    + QA ++F+ MP+R+V
Sbjct: 571 QTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDV 630

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML-ENMLAHAL 262
           ++W+ MI  YA+      A++L + M  S   PNE T  S+ ++    G L E   AH  
Sbjct: 631 FSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEY 690

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMILAYSN 320
                     +L       Y          +NSA   F ++  K   V  W A+I   ++
Sbjct: 691 ICNESIPLNDNLRAALIDMYAKCG-----SINSALQFFNQIRDKTFSVSPWNAIICGLAS 745

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HGH      +F+ M +   KP+ ITF+GVLS C HAGLVE GR+ F +M  AY  +P  +
Sbjct: 746 HGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIK 805

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY C+ D+L RAG ++EA  ++  M P + D V+ G LL ACR HGDV + +   E L  
Sbjct: 806 HYGCMVDLLGRAGLLEEAEEMIRSM-PMKADIVIWGTLLAACRTHGDVNIGERAAESLAG 864

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQI 485
           L PS  G  VL +N++A  G W++ + VR+ ++ +R++++   S +
Sbjct: 865 LAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSGV 910



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 165/385 (42%), Gaps = 80/385 (20%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N   ++++I+ Y K G + +A+ +FD     N  S   ++ GY KA Q+D  R+LFD MP
Sbjct: 303 NTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMP 362

Query: 117 LKLKNVVSWTTVVLG-----------------------------------CAHNGLI--- 138
              K  VS+TT+++G                                   C+H G I   
Sbjct: 363 --DKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNC 420

Query: 139 -------AKLEVISWTTMCTGLERN----AMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                   KL V     + T L R     +    AR  F +MP  ++V+WN M+  Y  A
Sbjct: 421 RMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKA 480

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G +  A ELF  +P ++V +W  MID Y        A+ +   M +S    NE    +++
Sbjct: 481 GLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLV 540

Query: 248 TSC---EGMLENMLAHALAIRLGFE-----QETSLTYKCTC----------------HYV 283
           ++C     + +    H + ++ GF+     Q T + +   C                H  
Sbjct: 541 SACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600

Query: 284 FWDW---GFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            W+    GF  +  V+ AR  F+ +  +DV SW+ MI  Y+          LF +M+ SG
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGR 363
            KP+E+T V V S  +  G +++GR
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGR 685



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 61/311 (19%)

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           K A+  F   P  + ++ N M+  Y  AG +  A +LF++MP +   ++  MI    +N 
Sbjct: 321 KDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNE 380

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTY 276
               A+++   M     +PN+ T  +++ +C     +L   + HA+AI+L  E    ++ 
Sbjct: 381 CFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVST 440

Query: 277 K-----CTCHYV--------------FWDWGFQLD-------VNSARLAFERLEAKDVVS 310
                 C C  V                 W   L+       V+ AR  FER+  KDV+S
Sbjct: 441 NLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVIS 500

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS-----------HAGLV 359
           W  MI  Y       +   ++  ML+SG   +EI  V ++S C            H  +V
Sbjct: 501 WGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVV 560

Query: 360 EKGRKTFNLMSRAY-------------------GFKPRAEHYSCLADILRRAGQVKEAMR 400
           +KG   +N +                       G K   E ++ L     +   V +A +
Sbjct: 561 KKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARK 620

Query: 401 VVSKMPPHERD 411
           +   MP  ERD
Sbjct: 621 IFDDMP--ERD 629



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 65/310 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--------NI 58
            G V  A +LF+ +   D +S  +MI  ++  + L +A  ++RAM  S          N+
Sbjct: 480 AGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNL 539

Query: 59  VA-----------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           V+                             ++ +I  Y   G +D A   F+   + ++
Sbjct: 540 VSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHL 599

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SW +L+SG+ K R VD+ R++FD MP   ++V SW+T++ G A          +    +
Sbjct: 600 ESWNALVSGFIKNRMVDQARKIFDDMP--ERDVFSWSTMISGYAQTDQSRIALELFHKMV 657

Query: 150 CTGLERNAMT-----------------KLAREYFVQ--MP-NKDIVAWNAMITAYVDAGN 189
            +G++ N +T                 + A EY     +P N ++ A  A+I  Y   G+
Sbjct: 658 ASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRA--ALIDMYAKCGS 715

Query: 190 MAQASELFNLMPQR--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           +  A + FN +  +  +V  WNA+I   A +G     + + + M +    PN  T   +L
Sbjct: 716 INSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVL 775

Query: 248 TSC--EGMLE 255
           ++C   G++E
Sbjct: 776 SACCHAGLVE 785


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 258/541 (47%), Gaps = 80/541 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++  A KLFDEM+Q D  S  +M++++ ++  +     +F  MP   R+ V+ + +I 
Sbjct: 71  SGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP--SRDSVSYNTVIS 128

Query: 67  GYVKAGRVDEARKVFDEIYE---------------------------------------G 87
           G+   GR   A  VF  + +                                       G
Sbjct: 129 GFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGG 188

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           NV+   +L   Y +  ++D+ RRLFDRM   ++NVV+W  ++ G   N    K       
Sbjct: 189 NVFVCNALTDLYARCGEIDQARRLFDRMV--IRNVVTWNLMISGYLKNRQPEKC------ 240

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                        L  E  V     D V  ++++ AY+ AG + +A ++F  + +++   
Sbjct: 241 -----------IDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC 289

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAI 264
           W  MI   A+NG E  A+ L + M      P+  T +S+++SC     +    + H  A 
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAF 349

Query: 265 RLGFEQETSLTYK-----CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
            +G   +  ++       C C      W            F  ++ ++VVSW +MI  Y+
Sbjct: 350 LMGVNDDLLVSSALVDMYCKCGVTRDAWTI----------FSTMQTRNVVSWNSMIGGYA 399

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            +G   +   L+  ML+   KPD +TFVGVLS C HAGLVE+G++ F  MS  +G +P  
Sbjct: 400 LNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTP 459

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +HY+C+ ++  R+G + +A+ ++S M   E + ++   +L  C + GD++  +     LI
Sbjct: 460 DHYACMVNLFGRSGHMDKAVDLISSM-SQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLI 518

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPM 498
           EL P ++  Y++ +N++AARG W + A +R  M+ + VKK +++S IE+  + H  +A  
Sbjct: 519 ELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADD 578

Query: 499 R 499
           R
Sbjct: 579 R 579



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 23/261 (8%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
           T  +   G++ +A +LFD M   + V+   MI+ +L+N    K   LF  M  S  + + 
Sbjct: 197 TDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQ 256

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           V  S+++  Y++AG +DEARKVF EI E +   WT +I G  +  + ++   LF  M L+
Sbjct: 257 VTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLE 316

Query: 119 LKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
                 +T  +VV  CA    +   +V+       G+                 N D++ 
Sbjct: 317 NARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGV-----------------NDDLLV 359

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A++  Y   G    A  +F+ M  RNV +WN+MI  YA NG +  A+ L   M +   
Sbjct: 360 SSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENL 419

Query: 237 MPNETTCTSILTSC--EGMLE 255
            P+  T   +L++C   G++E
Sbjct: 420 KPDSVTFVGVLSACVHAGLVE 440



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 23/292 (7%)

Query: 78  RKVFDEIYEGNVYS---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           R+  D +Y     S   +T L    F+A  VD+ +RL   M L L       T +    H
Sbjct: 8   RQAIDTLYTNGPASHECYTRLALECFRASDVDQAKRLKSHMHLHL--FKPNDTFI----H 61

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           N L+                ++     AR+ F +M  +D  +WNAM++ Y  +G +    
Sbjct: 62  NRLL------------NLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLR 109

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
            +F+ MP R+  ++N +I  +A NG  G A+ +   M +    P E T  S+L +C  +L
Sbjct: 110 VIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLL 169

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
           +      +  R+         + C      +    ++D   AR  F+R+  ++VV+W  M
Sbjct: 170 DLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID--QARRLFDRMVIRNVVTWNLM 227

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           I  Y  +    +   LF  M  S  KPD++T   VL     AG +++ RK F
Sbjct: 228 ISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVF 279


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 253/511 (49%), Gaps = 55/511 (10%)

Query: 8   GKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPE---SQRNIVA 60
           G  +EA +LF  M    ++P+  + +S+++      DL   +++   + +      N+V+
Sbjct: 131 GHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVS 190

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
            + +I  Y+K+  V++  KVF+ +   ++ SW +L+SG++ ++    G R+F +M L+  
Sbjct: 191 -NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGF 249

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             N+ ++ +V+  C+                 + L+     ++         + D     
Sbjct: 250 KPNMFTFISVLRSCS-----------------SLLDPEFGKQVHAHIIKNSSDDDDFVGT 292

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y  A  +  A   F+ +  R++++W  +I  YA+      A+K    M +    P
Sbjct: 293 ALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKP 352

Query: 239 NETTCTSILTSCEGM--LEN-MLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWG 288
           NE T  S L+ C  M  LEN    HA+A++ G   +         L  KC C        
Sbjct: 353 NEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGC-------- 404

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  A   F+ L ++D+VSW  +I  YS HG G +    F  ML  G  PDE TF+G
Sbjct: 405 ----MEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIG 460

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM--P 406
           VLS CS  GLVE+G+K F+ MS+ YG  P  EHY+C+ DIL RAG+  E    + +M   
Sbjct: 461 VLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLT 520

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P+    ++   +LGAC+LHG+V   +   ++L E++P    +Y+L +N+ A++G WD+  
Sbjct: 521 PYS---LIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVR 577

Query: 467 QVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            +R  M  R +KK    S +EV G+ H  L+
Sbjct: 578 NIRALMTSRGIKKEPGCSWVEVDGQVHVFLS 608



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 44/376 (11%)

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LK 120
           +++D Y K G V +A KVF +I   +V +W+++I+G  +     E   LF  M  K    
Sbjct: 91  SLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARP 150

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N  + +++V    + G +   + I       G E + +                   N +
Sbjct: 151 NQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVS-----------------NPL 193

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y+ +  +   +++F  M   ++ +WNA++  +  +   G   ++   M    F PN 
Sbjct: 194 IMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNM 253

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQ 290
            T  S+L SC  +L+       HA  I+   + +         +  K  C          
Sbjct: 254 FTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC---------- 303

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +  A +AF+RL  +D+ SWT +I  Y+      +  + F +M + G KP+E T    L
Sbjct: 304 --LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCL 361

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSH   +E GR+   +  +A  F       S L D+  + G ++ A  +   +    R
Sbjct: 362 SGCSHMATLENGRQLHAVAVKAGHFGDIFVG-SALVDLYGKCGCMEHAEAIFKGLI--SR 418

Query: 411 DHVVLGALLGACRLHG 426
           D V    ++     HG
Sbjct: 419 DIVSWNTIISGYSQHG 434



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%)

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           M  A  LF  MP++N  +WNA+++ YA+ G     +KL   M +     ++ T +++L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 250 CEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C     + E  + HALA+R G E +  L   C+   ++   G    V  A   F ++   
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLG--CSLVDMYSKCG---TVYDALKVFTKIRNP 115

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DVV+W+AMI      GHG +   LF  M + G +P++ T   ++S  ++ G +  G+   
Sbjct: 116 DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIH 175

Query: 367 NLMSRAYGFK 376
             + + YGF+
Sbjct: 176 GCICK-YGFE 184



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 35/287 (12%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV------VSWTTVVL 130
           A ++F  + E N  SW +L++GY    Q+ +G+++  ++  K+K         + +TV+ 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGY---AQLGDGKKVL-KLFCKMKECETKFSKFTLSTVLK 59

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           GCA+ G + + +V+    + +G E +     +                 ++  Y   G +
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCS-----------------LVDMYSKCGTV 102

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A ++F  +   +V  W+AMI    + G    A +L +LM +    PN+ T +S++++ 
Sbjct: 103 YDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTA 162

Query: 251 EGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
             M +       H    + GFE +  ++      Y+         V      FE +   D
Sbjct: 163 TNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYM-----KSRCVEDGNKVFEAMTNPD 217

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           +VSW A++  + +     +  R+F +ML  G KP+  TF+ VL  CS
Sbjct: 218 LVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 246/475 (51%), Gaps = 42/475 (8%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           ++++ +  DLP A AL+  M   ++N ++ + +I+GYV+AG +  ARKVFDE+ +  + +
Sbjct: 1   MSMYSKLGDLPSAVALYERM--RKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTT 58

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           W ++I+G  +    +EG  LF  M     +   +T   LG   +G  A L  +S      
Sbjct: 59  WNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYT---LGSVFSG-SAGLRSVSIGQQIH 114

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G         A +Y +++   D+V  +++   Y+  G +     +   MP RN+  WN +
Sbjct: 115 GY--------AIKYGLEL---DLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 163

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGF 268
           I   A+NG     + L  +M  S   PN+ T  ++L+SC  +    +    HA AI++G 
Sbjct: 164 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 223

Query: 269 EQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
                      S+  KC C            +  A  AF   E +D V W++MI AY  H
Sbjct: 224 SSVVAVVSSLISMYSKCGC------------LGDAAKAFSEREDEDEVMWSSMISAYGFH 271

Query: 322 GHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           G G +  +LF  M  ++  + +E+ F+ +L  CSH+GL +KG + F++M   YGFKP  +
Sbjct: 272 GQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLK 331

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L RAG + +A  ++  MP  + D V+   LL AC +H +  MA  + + ++E
Sbjct: 332 HYTCVVDLLGRAGCLDQAEAIIKSMPI-KPDPVIWKTLLSACNIHKNAEMAQKVFKEILE 390

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
           + P+ S  YVL ANVHA+   W + ++VRK M ++ VKK A  S  E KG+ H  
Sbjct: 391 IDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQF 445



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S+ GC G   +A K F E    D V  +SMI+ +  +    +A  LF +M E     V E
Sbjct: 238 SKCGCLG---DAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNE 294

Query: 62  SAMID---GYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFD 113
            A ++       +G  D+  ++FD + E       +  +T ++    +A  +D+   +  
Sbjct: 295 VAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIK 354

Query: 114 RMPLKLKNVVSWTTVVLGC 132
            MP+K   V+ W T++  C
Sbjct: 355 SMPIKPDPVI-WKTLLSAC 372


>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
 gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 535

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 247/482 (51%), Gaps = 54/482 (11%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPE--------SQRNIVAESAMIDGYVKAGRVDE 76
           P   A++  ++ R  D  +A +L    P         +   +V+ ++++   +++G +  
Sbjct: 86  PYPRAALAHLYARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRNSLLASLLRSGDLAA 145

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR +FD +   +V SW S+++G  KA  +D    LFD+MP +  N  SW  V+ G    G
Sbjct: 146 ARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPER--NAASWNAVMCGYIAQG 203

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
            +A+                     ARE F QMP +  V+W  MI+ Y ++G++  A EL
Sbjct: 204 DLAQ---------------------ARELFEQMPVRSNVSWITMISGYANSGDVHAAGEL 242

Query: 197 FNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCEGM 253
           F  M  +++++ WNAMI  YA+NG    A+ + N M +     MPNE T +S++++C  +
Sbjct: 243 FERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQL 302

Query: 254 LE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL-----AFERLEA 305
            +    + A +    +G E +  L                L   S R+      F  L  
Sbjct: 303 GDLRFGLWAESFMGSVGIELDDHLRTALV----------DLHTKSGRIDRAFDLFRGLGM 352

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +DVVS++A+I+    +G   +   LF  M  +   P+ +TFVG+LS  S+AGL+E+ R  
Sbjct: 353 RDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARAC 412

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M+  Y   P  EHY+ + D+L R+G++ EA +++ +M P + D  + GALL ACRLH
Sbjct: 413 FASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQM-PMKPDASIWGALLLACRLH 471

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            +V + + +  +  EL+P  SG Y+L  N+++   +W++  ++RK M ER + K+   S 
Sbjct: 472 NNVELGEIVASKCFELEPGESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPGSSW 531

Query: 485 IE 486
           ++
Sbjct: 532 VQ 533



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 51/284 (17%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G +  A  LFD M   D VS  SM+    +   L  A  LF  MPE  RN  + +A++ 
Sbjct: 140 SGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPE--RNAASWNAVMC 197

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           GY+  G + +AR++F+++   +  SW ++ISGY  +  V     LF+RM  K K++ +W 
Sbjct: 198 GYIAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERMENK-KDLYAWN 256

Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA---------- 176
            ++   A NG             C         ++ + +   MPN+   +          
Sbjct: 257 AMIACYAKNG-------------CAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLG 303

Query: 177 ------W-----------------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                 W                  A++  +  +G + +A +LF  +  R+V +++A+I 
Sbjct: 304 DLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIV 363

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT--SCEGMLE 255
               NG    A+ L   M  ++  PN  T   +L+  S  G++E
Sbjct: 364 GCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLME 407



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAM 64
           +G++  A  LF  +   D VS +++I     N    +A +LF+ M +++   N V    +
Sbjct: 337 SGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGL 396

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +  Y  AG ++EAR  F  + E    S     +T ++    ++ ++DE  +L  +MP+K 
Sbjct: 397 LSAYSNAGLMEEARACFASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMK- 455

Query: 120 KNVVSWTTVVLGC-AHNGL 137
            +   W  ++L C  HN +
Sbjct: 456 PDASIWGALLLACRLHNNV 474


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 159/539 (29%), Positives = 259/539 (48%), Gaps = 37/539 (6%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIV 59
           S    +G +++A  +FD M   D VS  SMI   + N    +A   F  M    ++    
Sbjct: 246 SMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHA 305

Query: 60  AESAMIDGYVKAGRVDEAR----KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             +++I        +   R    K        N    T+L+    K +++D+   LF  M
Sbjct: 306 TFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLM 365

Query: 116 PLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKL 161
              +++VVSWT ++ G   NG                 K    +++T+ T      ++++
Sbjct: 366 H-GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEI 424

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
             E       K      A++ A+V  GN++ A ++F L+  ++V  W+AM+  YA+ G  
Sbjct: 425 HAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGET 484

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEG----MLENMLAHALAIRLGFEQETSLTYK 277
             A K+ + + +    PNE T  SI+ +C      + +    HA AI+L           
Sbjct: 485 EEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNAL----- 539

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C    +   +  + ++ SA   F+R + +D+VSW +MI  Y+ HG   +   +F  M K 
Sbjct: 540 CVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKR 599

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             + D ITF+GV+S C+HAGLV KG+  FN+M   +   P  EHYSC+ D+  RAG + +
Sbjct: 600 NLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGK 659

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           AM +++ M P      V   +L A R+H ++ +     E++I L+P  S AYVL +N++A
Sbjct: 660 AMDIINGM-PFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYA 718

Query: 458 ARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           A G W E   VRK M+ RRVKK   +S IEVK K ++ LA     P+ +  Y  L E++
Sbjct: 719 AAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELN 777



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 170/406 (41%), Gaps = 81/406 (19%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           ++++D Y K G V + R+VFDE+ + +V SW SL++GY   R  D+   LF  M ++   
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 120 KNVVSWTTVVLGCAHNG----------LIAKL----EVISWTTMCTGLERNAMTKLAREY 165
            +  + +TV+   A+ G          L+ KL    E +   ++ + L ++ M + AR  
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  M NKD V+WN+MI  +V  G   +A E FN M                    + A  
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNM--------------------QLAGA 300

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE----TSLTYKC 278
           K           P   T  S++ SC  + E  L    H   ++ G        T+L    
Sbjct: 301 K-----------PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVAL 349

Query: 279 T-CHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           T C  +  D  F L        F  +   + VVSWTAMI  Y  +G   Q   LF+ M +
Sbjct: 350 TKCKEI--DDAFSL--------FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRR 399

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGR----KTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            G KP+  T+  +L+   HA  + +      KT    S + G        + L D   + 
Sbjct: 400 EGVKPNHFTYSTILT-VQHAVFISEIHAEVIKTNYEKSSSVG--------TALLDAFVKI 450

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           G + +A++V   +    +D +   A+L      G+   A  I  +L
Sbjct: 451 GNISDAVKVFELIET--KDVIAWSAMLAGYAQAGETEEAAKIFHQL 494



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 11/237 (4%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A +LF+  P R++   N ++ RY+R      A+ L   +++S   P+  T + +L+ C G
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 253 MLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
                +    H   ++ G     S+       Y         +V   R  F+ +  +DVV
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTG-----NVRDGRRVFDEMGDRDVV 169

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW +++  YS +    QV+ LF  M   G +PD  T   V++  ++ G V  G +   L+
Sbjct: 170 SWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALV 229

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +  GF+      + L  +L ++G +++A  V   M    +D V   +++    ++G
Sbjct: 230 VK-LGFETERLVCNSLISMLSKSGMLRDARVVFDNME--NKDSVSWNSMIAGHVING 283


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 147/510 (28%), Positives = 259/510 (50%), Gaps = 43/510 (8%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEA----LFRAMPE 53
           S +   G ++E  +L   M     +PD  +  S+++       L   +     + RA  E
Sbjct: 220 SGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLE 279

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              +I  E+++I  Y+K G V+ A ++F+ +   +V SWT++ISG  +    D    +F 
Sbjct: 280 QDSHI--ETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFR 337

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK- 172
           RM   LK+ V  +T  +              S    C  L    +      Y ++   K 
Sbjct: 338 RM---LKSRVMPSTATIA-------------SVLAACAELGSFPLGTSVHGYILRQRIKL 381

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI + N+++T Y   G++ Q+  +F+ M +R++ +WNA++  +A+NG    A+ L N M 
Sbjct: 382 DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR 441

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD------ 286
           ++R  P+  T  S+L +C        A   A+  G      +T  C    +  D      
Sbjct: 442 KARQRPDSITVVSLLQAC--------ASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           +    D+ SA+  F+R+  +D+VSW+++I  Y +HG G    R+++  L +G +P+ + +
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +LS CSH GLV++G   F+ M++ +G +PR EH +C+ D+L RAG+V+EA     +M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           P +    VLG LL ACR  G+V + D +   ++ L+P+++G YV  A+ +A+   WD   
Sbjct: 614 P-KPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVG 672

Query: 467 QVRKKMER-RVKKVASFSQIEVKGKDHTLL 495
           +V  +M+   +KK+  +S IE+ G   T  
Sbjct: 673 EVWTQMKSLHLKKLPGWSFIELHGTITTFF 702



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 155/365 (42%), Gaps = 33/365 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++I+ Y K G    ARKVFD + + NV  WT++I  Y +A + D    +++ M  + + 
Sbjct: 87  TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM--RRQG 144

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           +   +  +LG     L +  L+ +    +  G                    D+   N+M
Sbjct: 145 IQPSSVTMLGLLSGVLELVHLQCLHACVIQYGF-----------------GSDVALANSM 187

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G +  A  LF LM  R+V +WN+++  YA+ G     ++LL  M      P++
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 241 TTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
            T  S L S   M   +    + H   +R G EQ++ +       Y+        +VNSA
Sbjct: 248 QTFGS-LVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCG-----NVNSA 301

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FE +  KDV+SWTAMI     +        +F RMLKS   P   T   VL+ C+  
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G    G      + R    K      + L  +  + G ++++  V  +M    RD V   
Sbjct: 362 GSFPLGTSVHGYILRQR-IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS--RRDIVSWN 418

Query: 417 ALLGA 421
           A++  
Sbjct: 419 AIVSG 423



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 20/293 (6%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            ++I  Y   G+   A ++F+ M  RNV  W  MI  Y R G    A  + N+M +    
Sbjct: 87  TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ 146

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK-----CTCHYVFWDWGFQLD 292
           P+  T   +L+    ++     HA  I+ GF  + +L        C C            
Sbjct: 147 PSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGR---------- 196

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           V  A+  FE ++A+DV+SW +++  Y+  G+  +V +L  RM   G +PD+ TF  ++S 
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            +    +  G+     + RA G +  +   + L  +  + G V  A R+   M    +D 
Sbjct: 257 AAMQSKLGVGKMVHGHILRA-GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM--MHKDV 313

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           +   A++     +    MA  +  R+++ +   S A +  A+V AA  E   F
Sbjct: 314 ISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATI--ASVLAACAELGSF 364


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 225/444 (50%), Gaps = 27/444 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYS--WTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +A+I  Y K G V +ARKVF+E  + +  S  + +LISGY    +V +   +F RM    
Sbjct: 92  TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETG 151

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            +V S T +       GL+    V  +  +   L    +            + ++   N+
Sbjct: 152 VSVDSVTML-------GLVPLCTVPEYLWLGRSLHGQCVKGGL--------DSEVAVLNS 196

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            IT Y+  G++     LF+ MP + + TWNA+I  Y++NG     ++L   M  S   P+
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L+SC  +    + H +   +   GF     ++      Y         ++  A
Sbjct: 257 PFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCG-----NLAKA 311

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  K +VSWTAMI  Y  HG G     LF  M+K G +PD   FV VLS CSH+
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL +KG + F  M R Y  +P  EHYSCL D+L RAG++ EAM  +  MP  E D  V G
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPV-EPDGAVWG 430

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           ALLGAC++H +V MA+    ++IE +P++ G YVL +N+++     +   ++R  M ER 
Sbjct: 431 ALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERA 490

Query: 476 VKKVASFSQIEVKGKDHTLLAPMR 499
            +K   +S +E KG+ H  LA  R
Sbjct: 491 FRKKPGYSYVEHKGRVHLFLAGDR 514



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 63/288 (21%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           + +P    ++I+++ +   +  A  +F   P+S +  V  +A+I GY    +V +A  +F
Sbjct: 85  ETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144

Query: 82  DEIYEGNV------------------YSW---------------------TSLISGYFKA 102
             + E  V                  Y W                      S I+ Y K 
Sbjct: 145 RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC 204

Query: 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--- 159
             V+ GRRLFD MP  +K +++W  V+ G + NGL   +  +      +G+  +  T   
Sbjct: 205 GSVEAGRRLFDEMP--VKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262

Query: 160 -----------KLAREY--FVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                      K+  E    V+    +PN  +   NA I+ Y   GN+A+A  +F++MP 
Sbjct: 263 VLSSCAHLGAKKIGHEVGKLVESNGFVPN--VFVSNASISMYARCGNLAKARAVFDIMPV 320

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +++ +W AMI  Y  +G     + L + M +    P+      +L++C
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSAC 368



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 33/224 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLR------NHDLPKAEALFRAM 51
           S +   G   +  +L+++M      PDP +  S+++           H++ K       +
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289

Query: 52  PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
           P    N+   +A I  Y + G + +AR VFD +   ++ SWT++I  Y      + G  L
Sbjct: 290 P----NVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLML 345

Query: 112 FDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           FD M  +    +   +  V+  C+H+GL  K           GLE      + REY ++ 
Sbjct: 346 FDDMIKRGIRPDGAVFVMVLSACSHSGLTDK-----------GLE--LFRAMKREYKLE- 391

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
           P  +   ++ ++     AG + +A E    MP + +   W A++
Sbjct: 392 PGPE--HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 154/500 (30%), Positives = 255/500 (51%), Gaps = 31/500 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           GK+K+A ++  + S P   +   +I        L     + R + +  S ++    + +I
Sbjct: 60  GKLKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLI 119

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNV 122
             Y   G VD ARKVFD+  +  +Y W +L      A   +E   L+   +R+ ++  + 
Sbjct: 120 GMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDR 178

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            ++T V+  C  +   A         +  G E +A   L R  +    N  +     ++ 
Sbjct: 179 FTYTYVLKACVASECTAD-------HLTKGKEIHA--HLTRRGY----NSHVYIMTTLVD 225

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNE 240
            Y   G +  AS +FN MP RNV +W+AMI  YA+NG    A++    M        PN 
Sbjct: 226 MYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNS 285

Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  S+L +C  +    +  L H   +R G +   S+    +     +    +LDV   +
Sbjct: 286 VTMVSVLQACASLAALEQGRLIHGYILRRGLD---SILPVISALVTMYGRCGKLDV--GQ 340

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+R+  +DVVSW ++I +Y  HG+G +  ++F  ML +G  P  +TFV VL  CSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G++ F  M R +G KP+ EHY+C+ D+L RA ++ EA ++V  M   E    V G+
Sbjct: 401 LVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRT-EPGPKVWGS 459

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-V 476
           LLG+CR+HG+V +A+    RL  L+P ++G YVL A+++A    WDE  +V+K +E R +
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519

Query: 477 KKVASFSQIEVKGKDHTLLA 496
           +K+     +EV+ K ++ ++
Sbjct: 520 QKLPGRCWMEVRRKMYSFVS 539


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 236/460 (51%), Gaps = 28/460 (6%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PL 117
           ++ +I  Y    R+ +AR +FD++   +  +W  +I GY +    D+  RLF+ M    +
Sbjct: 159 QTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDM 218

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVIS--------------WTTMCTGLERNAMTKLAR 163
           K  +V+   TV+  C H G ++    I                T +           LAR
Sbjct: 219 KPDSVI-LCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLAR 277

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + +  + +K ++   AM++ Y   G +  A  +F+ M +R++  W+AMI  YA +     
Sbjct: 278 KIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQE 337

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTC 280
           A+KL + M Q R +P++ T  S++++C     + +    H    R GF +  S+      
Sbjct: 338 ALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALID 397

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y         ++  AR  FE +  K+V+SW++MI A++ HG+     +LF RM +   +
Sbjct: 398 MYAKCG-----NLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIE 452

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+ +TF+GVL  C HAGLVE+G K F+ M   +G  P  EHY C+ D+  RA  +++A+ 
Sbjct: 453 PNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIE 512

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  M P   + ++ G+L+ AC++HG+  + ++  +RL+EL+P   GA V+ +N++A   
Sbjct: 513 LIETM-PFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEK 571

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
            W++   +RK M  + + K  + S+IE+  + H  +   R
Sbjct: 572 RWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADR 611



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 35/279 (12%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S ++++  +AM+ GY K G V +AR +FD++ E ++  W+++ISGY ++ Q  E  +LFD
Sbjct: 284 SSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFD 343

Query: 114 RMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
            M  K  + + ++  +V+  C+H G +A+   I              T + R  F     
Sbjct: 344 EMLQKRSVPDQITMLSVISACSHVGALAQANWIH-------------TYVDRSGF----G 386

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           + +   NA+I  Y   GN+ +A E+F  MP++NV +W++MI+ +A +G   +A+KL   M
Sbjct: 387 RALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRM 446

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            +    PN  T   +L +C         HA  +  G +  +S+  +         +G  +
Sbjct: 447 KEVNIEPNGVTFIGVLYAC--------GHAGLVEEGEKLFSSMINEHGISPTREHYGCMV 498

Query: 292 DV----NSARLAFERLE----AKDVVSWTAMILAYSNHG 322
           D+    N  R A E +E    A +V+ W +++ A   HG
Sbjct: 499 DLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 60/273 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMPES- 54
           S +   G VK+A  +FD+M + D V  ++MI+ +  +    +A  LF      R++P+  
Sbjct: 296 SGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQI 355

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                          R +   +A+ID Y K G + +AR+VF+ +
Sbjct: 356 TMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENM 415

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLE 142
              NV SW+S+I+ +      D   +LF RM  + ++ N V++  V+  C H GL+ + E
Sbjct: 416 PRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGE 475

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP- 201
            +              + +  E+ +  P ++   +  M+  Y  A  + +A EL   MP 
Sbjct: 476 KL-------------FSSMINEHGIS-PTRE--HYGCMVDLYCRANFLRKAIELIETMPF 519

Query: 202 QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
             NV  W +++     +G     E AA +LL L
Sbjct: 520 APNVIIWGSLMSACQVHGEAELGEFAAKRLLEL 552


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 256/535 (47%), Gaps = 70/535 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+++A  LFD+M + D  S  ++++ + ++  +   +A F  MP   R+ V+ +  I G
Sbjct: 72  GKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPF--RDSVSYNTTIAG 129

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
           +       E+ ++F  +                                       + GN
Sbjct: 130 FSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGN 189

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           V+ W +L   Y K  ++++ R LFD   L  KN+VSW  ++ G A NG   K        
Sbjct: 190 VFIWNALTDMYAKCGEIEQARWLFD--CLTKKNLVSWNLMISGYAKNGQPEK-------- 239

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
            C GL      +L+      MP  D V  + +I AY   G + +A  +F+   ++++  W
Sbjct: 240 -CIGLLHQ--MRLSG----HMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIR 265
            AM+  YA+NG E  A+ L N M      P+  T +S+++SC     +      H  +I 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G     +L        ++   GF   ++ AR  F  +  ++VVSW AMI+  + +GH  
Sbjct: 351 AGL--NNNLLVSSALIDMYSKCGF---IDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDK 405

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF  ML+   KPD +TF+G+LS C H   +E+G++ F+ +S  +G  P  +HY+C+
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACM 465

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            ++L R G++++A+ ++  M  H+ D ++   LL  C   GD+  A+     L EL P+ 
Sbjct: 466 VNLLGRTGRIEQAVALIKNM-AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI 524

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
           +  Y++ +N++A+ G W + A VR  M+ + VKK A FS IE+  + H   +  R
Sbjct: 525 AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDR 579



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 184/422 (43%), Gaps = 68/422 (16%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G++ +A+ +FD++ + + +SW +L+S Y K+  +   +  FDRMP   ++ VS+ T
Sbjct: 68  YAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP--FRDSVSYNT 125

Query: 128 VVLGCAHNGLIAK-LEVI----------SWTTMCTGLERNAMTKLAREYFVQMPNKDIV- 175
            + G + N    + LE+           +  T+ + L  +A   L   Y  Q+    IV 
Sbjct: 126 TIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQL-LDLRYGKQIHGSIIVR 184

Query: 176 -------AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                   WNA+   Y   G + QA  LF+ + ++N+ +WN MI  YA+NG     + LL
Sbjct: 185 NFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLL 244

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
           + M  S  MP++ T ++I+ +                            C C        
Sbjct: 245 HQMRLSGHMPDQVTMSTIIAA---------------------------YCQCGR------ 271

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V+ AR  F   + KD+V WTAM++ Y+ +G       LF  ML    +PD  T   
Sbjct: 272 ----VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           V+S C+    +  G+      S   G        S L D+  + G + +A  V + MP  
Sbjct: 328 VVSSCAKLASLHHGQAVHG-KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPT- 385

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGEWDEF 465
            R+ V   A++  C  +G  + A  + E +++   +P + +   +LSA +H     W E 
Sbjct: 386 -RNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC---NWIEQ 441

Query: 466 AQ 467
            Q
Sbjct: 442 GQ 443


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 191/343 (55%), Gaps = 30/343 (8%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A   F QM  +D+V+W +M+  Y   G +  A E+F+ MP RN++TW+ MI+ YA+N   
Sbjct: 171 AGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCF 230

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
             A+ L   M +   + NET   S+++SC        AH  A+  G   E +  Y    H
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSC--------AHLGALEFG---ERAYEYVVKSH 279

Query: 282 Y------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
                        +FW  G   D+  A   FE L   D +SW+++I   + HGH  +   
Sbjct: 280 MTVNLILGTALVDMFWRCG---DIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMH 336

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            F++M+  G  P ++TF  VLS CSH GLVEKG + +  M + +G +PR EHY C+ D+L
Sbjct: 337 YFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDML 396

Query: 390 RRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
            RAG++ EA   + KM  H + +  +LGALLGAC+++ +  +A+ +G  LI+++P  SG 
Sbjct: 397 GRAGKLAEAENFILKM--HVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGY 454

Query: 449 YVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           YVL +N++A  G+WD+   +R  M E+ VKK   +S IE+ GK
Sbjct: 455 YVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGK 497



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 112/224 (50%), Gaps = 22/224 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q ++  E++++  Y   G +  A ++F ++   +V SWTS+++GY K   V+  R +FD 
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDE 208

Query: 115 MPLKLKNVVSWTTVVLGCAHN----------------GLIAKLEV-ISWTTMCTGLERNA 157
           MP   +N+ +W+ ++ G A N                G++A   V +S  + C  L    
Sbjct: 209 MP--HRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALE 266

Query: 158 MTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             + A EY V+     +++   A++  +   G++ +A  +F  +P+ +  +W+++I   A
Sbjct: 267 FGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
            +G    AM   + M    F+P + T T++L++C   G++E  L
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 119/286 (41%), Gaps = 42/286 (14%)

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL-- 247
           +  A  +F+ +   N++ +N +I  ++       A      M +SR  P+  T   ++  
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126

Query: 248 -TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            +  E +L     H+  +R GF+ +  +       +++ + GF   + +A   F ++  +
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLV--HMYANCGF---IAAAGRIFGQMGFR 181

Query: 307 DVVSWTAMILAYSNHG------------------------HGF-------QVFRLFARML 335
           DVVSWT+M+  Y   G                        +G+       +   LF  M 
Sbjct: 182 DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK 241

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G   +E   V V+S C+H G +E G + +  + +++         + L D+  R G +
Sbjct: 242 REGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDI 300

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           ++A+ V   +P  E D +   +++    +HG    A +   ++I L
Sbjct: 301 EKAIHVFEGLP--ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISL 344


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 153/540 (28%), Positives = 257/540 (47%), Gaps = 75/540 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S      ++  A   + +M  P+     +MI  F++++   +A  L+  M  +  N+   
Sbjct: 22  SALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRA--NVSPT 79

Query: 62  SAMIDGYVKA-GRVDEAR-------KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S      +KA G V + R        V+   ++ +V+  TSL+  Y    +++E  R+FD
Sbjct: 80  SYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFD 139

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            MP +                       +V +WTTM +GL R      A   F  MP+++
Sbjct: 140 EMPER-----------------------DVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRN 176

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +  WN +I  Y     +  A  LFN MP R++ +W  MI+ Y++N     A+ + N M +
Sbjct: 177 LATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAK 236

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               P+E T  +++++C        AH  A+ LG E           HY     GF LDV
Sbjct: 237 HGISPDEVTMATVISAC--------AHLGALDLGKE----------IHYYIMQHGFNLDV 278

Query: 294 ----------------NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
                           + + L F +L  K++  W ++I   + HG+  +   +F +M + 
Sbjct: 279 YIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMERE 338

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KP+ +TFV VLS C+HAGL+E+GRK F  M+R +   P  EHY C+ D+L +AG ++E
Sbjct: 339 KIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEE 398

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A++++  M   E + V+ GALL  C+LH ++ +A     +L+ L+P +SG Y L  N++A
Sbjct: 399 ALQLIRTM-KLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNA 457

Query: 458 ARGEWDEFAQVRKKMERR--VKKVASFSQIEVKGKDHTLLAPMREMG-----YVVLKEVD 510
               W E A++R  M+ +   K+    S IE++ + H   A  +        Y +L E+D
Sbjct: 458 EVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELD 517



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 121/317 (38%), Gaps = 65/317 (20%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           N+D    N  I+A      M  A   +  M   NV+ +NAMI  + ++     A++L   
Sbjct: 11  NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHY---- 282
           M ++   P   T  S++ +C G++  +      H    R GF+    +       Y    
Sbjct: 71  MLRANVSPTSYTFPSLIKAC-GLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMG 129

Query: 283 -------VF--------WDWGFQL-------DVNSARLAFE------------------R 302
                  VF        + W   +       D++SA   F+                  R
Sbjct: 130 RIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYAR 189

Query: 303 LEAKDV-------------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
           L   DV             +SWT MI  YS +    +   +F  M K G  PDE+T   V
Sbjct: 190 LREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATV 249

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S C+H G ++ G++    + + +GF       S L D+  + G +  ++ +  K+   E
Sbjct: 250 ISACAHLGALDLGKEIHYYIMQ-HGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKL--RE 306

Query: 410 RDHVVLGALLGACRLHG 426
           ++     +++    +HG
Sbjct: 307 KNLFCWNSVIEGLAVHG 323


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 162/530 (30%), Positives = 257/530 (48%), Gaps = 52/530 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQ 55
           S +G    ++ + KLFD M Q D VS  S+++ + +   + +   L + M      P+ Q
Sbjct: 210 SMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQ 269

Query: 56  R-NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
               V   A   G +K GR     ++    ++ + +  TSLI  Y K   +D   R+F+R
Sbjct: 270 TFGSVLSVAASRGELKLGRCLHG-QILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFER 328

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVI-----------------SWTTMCTGL-ERN 156
             L  K+VV WT ++ G   NG   K   +                 S  T C  L   N
Sbjct: 329 -SLD-KDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYN 386

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             T +    F      DI   N+++T +   G++ Q+S +F+ M +RN+ +WNAMI  YA
Sbjct: 387 LGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYA 446

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQ--- 270
           +NG    A+ L N M      P+  T  S+L  C    +  L    H+  IR G      
Sbjct: 447 QNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCIL 506

Query: 271 -ETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
            +TSL    C C           D++ A+  F ++ + D+VSW+A+I+ Y  HG G    
Sbjct: 507 VDTSLVDMYCKCG----------DLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETAL 556

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
           R +++ L+SG KP+ + F+ VLS CSH GLVE+G   +  M+R +G  P  EH++C+ D+
Sbjct: 557 RFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDL 616

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHV--VLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           L RAG+V+EA  +  K      D V  VLG +L ACR +G+  + D I   ++ L+P  +
Sbjct: 617 LSRAGRVEEAYNLYKK---KFSDPVLDVLGIILDACRANGNNELGDTIANDILMLKPMDA 673

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           G +V  A+ +A+  +W+E  +    M    +KK+  +S I++ G   T  
Sbjct: 674 GNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWSFIDIHGTITTFF 723



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 184/432 (42%), Gaps = 44/432 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G    A K+FD M + + V   S+I  + R   +P+A +LF  M     Q + V   +++
Sbjct: 118 GFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLL 177

Query: 66  DGYVKAGRVDEAR-KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            G  +   V           +  ++    S++S Y K R ++  R+LFD M    +++VS
Sbjct: 178 FGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYM--DQRDLVS 235

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------------KLAREYFVQMP 170
           W ++V   A  G I ++ ++  T    G E +  T              KL R    Q+ 
Sbjct: 236 WNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQIL 295

Query: 171 ----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
               + D     ++I  Y+  GN+  A  +F     ++V  W AMI    +NG    A+ 
Sbjct: 296 RTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALA 355

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLE---------NMLAHALAIRLGFEQETSLTYK 277
           +   M +     +  T  S++T+C  +            M  H L + +   Q + +T  
Sbjct: 356 VFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIA-TQNSLVTMH 414

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
             C +          ++ + + F+++  +++VSW AMI  Y+ +G+  +   LF  M   
Sbjct: 415 AKCGH----------LDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSD 464

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
              PD IT V +L  C+  G +  G+   + + R  G +P     + L D+  + G +  
Sbjct: 465 HQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRPCILVDTSLVDMYCKCGDLDI 523

Query: 398 AMRVVSKMPPHE 409
           A R  ++MP H+
Sbjct: 524 AQRCFNQMPSHD 535



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 37/324 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           S++I+ Y K G  D ARKVFD + E NV  WTS+I  Y +  +V E   LFD M  +   
Sbjct: 108 SSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQ 167

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + V+  +++ G +    +A ++ +  + +  G                    DI   N+
Sbjct: 168 PSSVTMLSLLFGVSE---LAHVQCLHGSAILYGFM-----------------SDINLSNS 207

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           M++ Y    N+  + +LF+ M QR++ +WN+++  YA+ G     + LL  M    F P+
Sbjct: 208 MLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPD 267

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L+      E  L    H   +R  F+ +  +    T   V +  G  +D+  A
Sbjct: 268 PQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVE---TSLIVMYLKGGNIDI--A 322

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              FER   KDVV WTAMI     +G   +   +F +MLK G K    T   V++ C+  
Sbjct: 323 FRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQL 382

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAE 380
           G       ++NL +  +G+  R E
Sbjct: 383 G-------SYNLGTSVHGYMFRHE 399



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 9/304 (2%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D    +++I  Y   G    A ++F+ MP+RNV  W ++I  Y+R G    A  L + M 
Sbjct: 103 DAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMR 162

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           +    P+  T  S+L     +      H  AI  GF  + +L+      Y     G   +
Sbjct: 163 RQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMY-----GKCRN 217

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  +R  F+ ++ +D+VSW +++ AY+  G+  +V  L   M   G +PD  TF  VLS 
Sbjct: 218 IEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSV 277

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
            +  G ++ GR     + R   F   A   + L  +  + G +  A R+  +    ++D 
Sbjct: 278 AASRGELKLGRCLHGQILRT-CFDLDAHVETSLIVMYLKGGNIDIAFRMFER--SLDKDV 334

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR-GEWDEFAQVRKK 471
           V+  A++     +G    A  +  ++++    SS A + S     A+ G ++    V   
Sbjct: 335 VLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGY 394

Query: 472 MERR 475
           M R 
Sbjct: 395 MFRH 398


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 145/468 (30%), Positives = 226/468 (48%), Gaps = 56/468 (11%)

Query: 41  LPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISG 98
           L  AEA+ R +     ++   +A+I  Y +   +   RKVFDE      ++ SW S+++G
Sbjct: 134 LVHAEAVRRGLAA---DLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAG 190

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158
           Y    ++   + +FD MP   K+  SW T++ G    G               G++R   
Sbjct: 191 YVGCGEMGLAQEMFDEMP--QKDTFSWATLIDGYGKQG-------------GAGVDR--- 232

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              ARE F QMP +D+V WN+MI  Y   G M +A  LF  MP+RNV +W+ +ID +   
Sbjct: 233 ---ARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSC 289

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-----------MLAHALAIR 265
           G    A++    M +    P+       +++C   G LE             L   + ++
Sbjct: 290 GEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQ 349

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
                   +  KC C            ++ A L FE +  + VV+W  MI+    HG G 
Sbjct: 350 TAL---IDMYVKCGC------------LDLAMLIFESMAERSVVTWNVMIVGLGTHGFGL 394

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF RM       D+++ +G+L+ C+HAGLV +G + F+ M + +G  P+ EHY  L
Sbjct: 395 DAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGAL 454

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ +A   +  M P E    + G+LL ACR H  V +A+   ERL +L    
Sbjct: 455 VDLLGRAGRLDQARHAIETM-PMEPTPELWGSLLAACRSHSCVELAELSVERLADLGADD 513

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           SG YVL +N++A  G W +  ++RK M +  ++K    S IEV G+ H
Sbjct: 514 SGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIH 561



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 26/251 (10%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRN--HDLPKAEALFRAMPESQRNIVAES 62
           GC G++  A ++FDEM Q D  S A++I  + +     + +A  LF  MPE  R++V  +
Sbjct: 193 GC-GEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPE--RDLVCWN 249

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--- 119
           +MIDGY + GR+DEAR +F+E+ E NV SW+ +I G+    +  E    F  M L+    
Sbjct: 250 SMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSM-LRCGLR 308

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + ++    V  CA  G    LE   W  + + LE+  +              D+V   A
Sbjct: 309 PDRIAAVGAVSACAQLG---ALEQGRW--LHSYLEKKKLL------------SDVVVQTA 351

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  YV  G +  A  +F  M +R+V TWN MI     +G    A+ L + M       +
Sbjct: 352 LIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVD 411

Query: 240 ETTCTSILTSC 250
           + +   +LT+C
Sbjct: 412 DLSVLGMLTAC 422


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 163/519 (31%), Positives = 238/519 (45%), Gaps = 85/519 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           ++  Y     V  ARKVFDEI E NV     +I  Y       EG ++F  M        
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
               P  LK      T+V+G   +G   K+ + S   +  GL     +      AR    
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQ------------- 192
           +M  +D+V+WN+++  Y                       DAG MA              
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 193 --ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               ++F  M ++++ +WN MI  Y +N     A++L + M    F P+  + TS+L +C
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 251 EGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDV 308
                +  A +L  ++ G+ +   L           D   +   +  AR  FE ++++DV
Sbjct: 320 ----GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWTAMI AY   G G     LF+++  SG  PD I FV  L+ CSHAGL+E+GR  F L
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 435

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHG 426
           M+  Y   PR EH +C+ D+L RAG+VKEA R +  M   P+ER   V GALLGACR+H 
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNER---VWGALLGACRVHS 492

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           D  +     ++L +L P  SG YVL +N++A  G W+E   +R  M+ + +KK    S +
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

Query: 486 EVKGKDHTLLA--------------------PMREMGYV 504
           EV    HT L                      M+E+GYV
Sbjct: 553 EVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYV 591


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/447 (32%), Positives = 233/447 (52%), Gaps = 47/447 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           + +I+ YVK G +DEAR +FDE+ + NV SWT++IS Y  +   +   +  D + L L+ 
Sbjct: 55  NTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNS---NLNHKALDFLILMLRE 111

Query: 121 ----NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               N+ ++++V+  C  +GL+  L  +  + +  GLE                  D+  
Sbjct: 112 GVRPNMYTYSSVLRAC--DGLL-NLRQLHGSILKVGLE-----------------SDVFV 151

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I  Y   G    A  +FN M   ++  WN++I  +A+N      + L   M ++ F
Sbjct: 152 RSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADF 211

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTYK-----CTCHYVFWDWGFQ 290
           + +++T TS+L +C G+    L   + +  L ++Q+  L        C C          
Sbjct: 212 VADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCG--------- 262

Query: 291 LDVNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +  A L F R+   KDV+SW+ MI   + +G      +LF  M   G KP+ IT +GV
Sbjct: 263 -SLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGV 321

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  CSHAGLV  G   F  M   +G  P  EHY C+ D+L RAG++ EA++++ +M  HE
Sbjct: 322 LFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEM-NHE 380

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D V    LLGACR+H +V +A Y  + +++L P+ +G Y+L +N++A   +W++ A+VR
Sbjct: 381 PDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVR 440

Query: 470 KKMERR-VKKVASFSQIEVKGKDHTLL 495
           +KM  R VKK    S IEV  + H  +
Sbjct: 441 RKMRTRGVKKDPGCSWIEVSKQVHAFI 467



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 28/251 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+  +A  +F+EM   D V   S+I  F +N D  +   L++ M  +  + VA+ + +  
Sbjct: 163 GEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRA--DFVADQSTLTS 220

Query: 68  YVKA----GRVDEARKVFDEI--YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            ++A      ++  R+V   +  Y+ ++    +L+  Y K   +++   LF RM +  K+
Sbjct: 221 VLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRM-MTEKD 279

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           V+SW+T++ G A NG  A    +       G + N +T L             V +    
Sbjct: 280 VISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILG------------VLFACSH 327

Query: 182 TAYVDAG--NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
              V+ G        E F + P R    +  +ID   R G    A+KL++ M      P+
Sbjct: 328 AGLVNDGWYYFQSMKEHFGIDPGRE--HYGCIIDLLGRAGKLDEAVKLIHEMNHE---PD 382

Query: 240 ETTCTSILTSC 250
             T   +L +C
Sbjct: 383 AVTWRILLGAC 393


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 235/443 (53%), Gaps = 28/443 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A + +++ YVK+  + +A K+FDE+ E N  S+ +LI GY ++ +  E   LF R+ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 117 LK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            + L N  ++ +V+  CA    +     I    +  GL                 + D+ 
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGL-----------------HSDVF 174

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             NA++  Y   G M  + ELF   P RN  TWN +I  + + G    A++L   M + R
Sbjct: 175 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYR 234

Query: 236 FMPNETTCTSILTSCEGM--LENMLA-HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
               E T +S L +C  +  LE  L  H+L ++  F+++  +T      Y          
Sbjct: 235 VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCG-----S 289

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  ARL F+ +  +D VSW AMI  YS HG G +  R+F +M ++  KPD++TFVGVLS 
Sbjct: 290 IKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSA 349

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C++AGL+++G+  F  M + +G +P  EHY+C+  +L R G + +A++++ ++ P +   
Sbjct: 350 CANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI-PFQPSV 408

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           +V  ALLGAC +H D+ +     +R++E++P     +VL +N++A    WD  A VRK M
Sbjct: 409 MVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNM 468

Query: 473 ERR-VKKVASFSQIEVKGKDHTL 494
           +R+ VKK    S IE +G  H+ 
Sbjct: 469 KRKGVKKEPGLSWIESQGTVHSF 491



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 170/389 (43%), Gaps = 71/389 (18%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-----RAMPES-- 54
           S F C     +A+KLFDEM + + +S  ++I  +  +    +A  LF       +P    
Sbjct: 86  SDFLC-----DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLPNQFT 140

Query: 55  -----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                                          ++   +A++D Y K GR++ + ++F E  
Sbjct: 141 FASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESP 200

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLE 142
             N  +W ++I G+ +    ++  RLF  M L+ +     V++++ +  CA    +A LE
Sbjct: 201 HRNDVTWNTVIVGHVQLGDGEKALRLFLNM-LEYRVQATEVTYSSALRACAS---LAALE 256

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                    GL+ +++T   +  F    +KDIV  NA+I  Y   G++  A  +F+LM +
Sbjct: 257 --------PGLQIHSLT--VKTTF----DKDIVVTNALIDMYAKCGSIKDARLVFDLMNK 302

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHAL 262
           ++  +WNAMI  Y+ +G    A+++ + M ++   P++ T   +L++C      +L    
Sbjct: 303 QDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN--AGLLDQGQ 360

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDW----GFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
           A      Q+  +   C  HY    W    G  LD  + +L  E      V+ W A++ A 
Sbjct: 361 AYFTSMIQDHGIE-PCIEHYTCMVWLLGRGGHLD-KAVKLIDEIPFQPSVMVWRALLGAC 418

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFV 347
             H +  ++ R+ A+ +      D+ T V
Sbjct: 419 VIH-NDIELGRISAQRVLEMEPQDKATHV 446


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 254/508 (50%), Gaps = 33/508 (6%)

Query: 11  KEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
           KEA  LF EM +    P  V+   +I+   +  DL   E +   + E   + N V  +A+
Sbjct: 214 KEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNAL 273

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--------P 116
           +D Y+K G +D A+++FDE  + N+  + +++S Y +     E   + D M         
Sbjct: 274 VDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDR 333

Query: 117 LKLKNVVSWTTVVL----GCAHNGLIAKLEVISWTTMCTGLERNAMT----KLAREYFVQ 168
           + + + +S +  ++    G   +G + +  +  W ++   +    M     ++A   F  
Sbjct: 334 VTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDL 393

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           M NK +V+WN++   ++  G++  A E+FN +P+RN   WN MI    +      A++L 
Sbjct: 394 MSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELF 453

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFW 285
             M       +  T   I ++C  +    LA   H    + G   +  L        +F 
Sbjct: 454 REMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALV--DMFA 511

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G   D  SA   F ++  +DV +WTA I   +  G+G     LF +ML  G KPD + 
Sbjct: 512 RCG---DPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVL 568

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           FV VL+ CSH G VE+G   F+LM   +G  P+ EHY C+ D+L RAG ++EA  ++  M
Sbjct: 569 FVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSM 627

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P    D VV G+LL ACR+H +V MA Y  ER+ EL P  +G +VL +N++A+ G+W + 
Sbjct: 628 PMEPND-VVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDV 686

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           A+VR  + E+ V+KV   S ++V G  H
Sbjct: 687 ARVRLNLREKGVRKVPGSSSVQVNGVIH 714



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 167/403 (41%), Gaps = 49/403 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++  ++ +I  Y + G +D   KVF+ + E NV SWTSLI GY +  +  E   LF  
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-D 173
           M   ++  +  ++V + C          VIS    C  L    M +    Y  ++  K +
Sbjct: 223 M---VEAGIRPSSVTMVC----------VIS---ACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
            V  NA++  Y+  G +  A  LF+    RN+  +N ++  YAR G    A+ +L+ M Q
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 326

Query: 234 SRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLT-------YKC----- 278
               P+  T  S +++   +++     + H   IR G E   S+         KC     
Sbjct: 327 QGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEM 386

Query: 279 TCH---------YVFWD---WGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
            C           V W+    GF    DV SA   F ++  ++ V W  MI         
Sbjct: 387 ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLF 446

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
                LF  M   G K D +T +G+ S C + G  E  +     + +  G        + 
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-GIPCDMRLNTA 505

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
           L D+  R G  + AM+V +KM   ERD     A +G   + G+
Sbjct: 506 LVDMFARCGDPQSAMQVFNKMT--ERDVSAWTAAIGTMAMEGN 546



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 32/276 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEA----LFRAMPE 53
           S +   G  +EA  + DEM Q    PD V+  S I+   +  DL   +     + R   E
Sbjct: 306 SNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLE 365

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              +I   + +ID Y+K G+ + A +VFD +    V SW SL +G+ +   V+    +F+
Sbjct: 366 GWDSI--GNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFN 423

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIA-----------------KLEVISWTTMCTGLERN 156
           ++P   +N V W T++ G     L                   ++ ++   + C  L   
Sbjct: 424 QIP--ERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAP 481

Query: 157 AMTKLAREYFVQ--MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
            + K    Y  +  +P  D+    A++  +   G+   A ++FN M +R+V  W A I  
Sbjct: 482 ELAKWVHTYIEKNGIPC-DMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGT 540

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A  G    A  L N M      P+      +LT+C
Sbjct: 541 MAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTAC 576



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 36/353 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           ++KEA  +  +    + + C   +    + H       L + +P +   +V   A I   
Sbjct: 15  QIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQ-IPSTLTKLVNAGAEI--- 70

Query: 69  VKAGRVDEARKVFDEIYEGNVYS------WTSLISGYFKARQVDEGRRLFDRMPL--KLK 120
                +D ARK F E+++ +V S        SLI GY  A    E   L+ RM +     
Sbjct: 71  ASPESLDYARKAF-ELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTP 129

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-RNAMTKLAREYFVQMPNKDIVAWNA 179
           N  ++  V+ GC                 C G++   ++ K+  E       +D+   N 
Sbjct: 130 NHYTFPFVLSGCT-----------KIAAFCEGIQVHGSVVKMGLE-------EDVFIQNC 171

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y + G+M    ++F  M +RNV +W ++I  YAR      A+ L   M ++   P+
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPS 231

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSARL 298
             T   ++++C  + +  +   +   +G   E  L           D   +   +++A+ 
Sbjct: 232 SVTMVCVISACAKLRDLDMGERVCAYIG---ELGLKLNKVMVNALVDMYMKCGAIDAAKR 288

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            F+    +++V +  ++  Y+  G   +   +   ML+ G +PD +T +  +S
Sbjct: 289 LFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAIS 341



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 117/271 (43%), Gaps = 21/271 (7%)

Query: 192 QASELF--NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT------- 242
           +A ELF  ++     ++  N++I  Y+  G    A+ L   M      PN  T       
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           CT I   CEG+      H   +++G E++      C  H+ + + G    ++     FE 
Sbjct: 141 CTKIAAFCEGIQ----VHGSVVKMGLEEDV-FIQNCLIHF-YAECGH---MDHGHKVFEG 191

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  ++VVSWT++I  Y+      +   LF  M+++G +P  +T V V+S C+    ++ G
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG 251

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
            +    +    G K      + L D+  + G +  A R+  +    +R+ V+   +L   
Sbjct: 252 ERVCAYIGE-LGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECV--DRNLVLYNTILSNY 308

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
              G  R A  I + +++  P      +LSA
Sbjct: 309 ARQGLAREALAILDEMLQQGPRPDRVTMLSA 339



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 29/267 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK + A ++FD MS    VS  S+   F+RN D+  A  +F  +PE  RN V  + MI G
Sbjct: 382 GKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPE--RNAVFWNTMISG 439

Query: 68  YVKAGRVDEARKVFDEIY-EGNVYSWTSLIS-----GYFKARQVDEGRRLF---DRMPLK 118
            V+    ++A ++F E+  EG      +++      GY  A ++ +    +   + +P  
Sbjct: 440 LVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCD 499

Query: 119 LKNVVSWTTVVLGCAHN-------GLIAKLEVISWT----TMCTGLERNAMTKLAREYFV 167
           ++   +   +   C            + + +V +WT    TM         T L  +  +
Sbjct: 500 MRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLI 559

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT----WNAMIDRYARNGPEGA 223
           Q    D+V +  ++TA    G + Q   +F+LM    +      +  M+D   R G    
Sbjct: 560 QGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLRE 619

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A  L+  M      PN+    S+L +C
Sbjct: 620 AFDLIKSMPME---PNDVVWGSLLAAC 643


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 226/452 (50%), Gaps = 43/452 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYS------WTSLISGYFKARQVDEGRRLFDRM 115
           +A+I  Y K G V++ARKVF+E    N +S      + +LISGY    +V +   +F RM
Sbjct: 89  TALISMYCKCGLVEDARKVFEE----NPHSSQLGVCYNALISGYTANSKVSDAAFMFRRM 144

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK-LAREYFVQMPNKDI 174
                +V S T                ++    +CT  E   + + L  E        ++
Sbjct: 145 KETGVSVDSVT----------------ILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEV 188

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+ IT Y+  G++     LF+ MP + + TWNA+I  Y++NG     ++L   M  S
Sbjct: 189 AVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSS 248

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD------WG 288
              P+  T  S+L+SC        AH  A ++G E    +        VF        + 
Sbjct: 249 GVCPDPFTLVSVLSSC--------AHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              ++  AR  F+ +  K +VSWTAMI  Y  HG G     LF  M+K G +PD   FV 
Sbjct: 301 RCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVM 360

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS CSH+GL +KG + F  M R Y  +P  EHYSCL D+L RAG++ EAM  +  MP  
Sbjct: 361 VLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPV- 419

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D  V GALLGAC++H +V MA+    ++IE +P + G YVL +N+++     +   ++
Sbjct: 420 EPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRI 479

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           R  M ER  +K   +S +E KGK H  LA  R
Sbjct: 480 RVMMRERAFRKKPGYSYVEHKGKVHLFLAGDR 511



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 63/288 (21%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA---- 77
           + +P    ++I+++ +   +  A  +F   P S +  V  +A+I GY    +V +A    
Sbjct: 82  EAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMF 141

Query: 78  -------------------------------RKVFDEIYEGNVYS----WTSLISGYFKA 102
                                          R +  E  +G  YS      S I+ Y K 
Sbjct: 142 RRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKC 201

Query: 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-----------------EVIS 145
             V+ GRRLFD MP  +K +++W  V+ G + NGL   +                  ++S
Sbjct: 202 GSVESGRRLFDEMP--VKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVS 259

Query: 146 WTTMCTGLERNAMTKLAREYFVQ---MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
             + C  L    + +   E        PN  +   NA+I+ Y   GN+A+A  +F++MP 
Sbjct: 260 VLSSCAHLGAKKIGQEVGELVEANGFAPN--VFLSNALISMYARCGNLAKARAVFDIMPV 317

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +++ +W AMI  Y  +G     + L + M +    P+      +L++C
Sbjct: 318 KSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSAC 365



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 25/220 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMIT--VFLRNHDLPKAEALFRAMPESQ 55
           S +   G   +  +LF++M      PDP +  S+++    L    + +            
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFA 286

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            N+   +A+I  Y + G + +AR VFD +   ++ SWT++I  Y      + G  LFD M
Sbjct: 287 PNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDM 346

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +    +   +  V+  C+H+GL  K           GLE      + REY ++ P  +
Sbjct: 347 IKRGIRPDGAVFVMVLSACSHSGLTDK-----------GLE--LFRAMKREYKLE-PGPE 392

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
              ++ ++     AG + +A E  + MP + +   W A++
Sbjct: 393 --HYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALL 430



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 1/153 (0%)

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
           +F R  A    SW   +   +      +   L+  ML+SG+ PD  +F  +L  C+   L
Sbjct: 6   SFVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSL 65

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
              G++    + R  G +      + L  +  + G V++A +V  + P   +  V   AL
Sbjct: 66  PVSGQQLHCHVIRG-GCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNAL 124

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           +     +  V  A ++  R+ E   S     +L
Sbjct: 125 ISGYTANSKVSDAAFMFRRMKETGVSVDSVTIL 157


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 176/607 (28%), Positives = 271/607 (44%), Gaps = 113/607 (18%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI----- 58
           +G  G V++A K+FDEMS+ + V+  SM+  + +N    +A  +FR M      +     
Sbjct: 200 YGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVAL 259

Query: 59  --------------------------------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                           V  S++++ Y K G ++EA  VF  +  
Sbjct: 260 SGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAV 319

Query: 87  GNVYSWTSLISGYFKARQVD-----------EGRRLFDRMPLKLKNVVSWTT--VVLG-- 131
            +V +W  +++GY +   V+           EG R FD + L     V+  T  +VLG  
Sbjct: 320 KDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLR-FDCVTLSALLAVAADTRDLVLGMK 378

Query: 132 ----CAHNGL-----------------------------IAKLEVISWTTMCTGLERNAM 158
               C  N                               + K +++ W TM        +
Sbjct: 379 AHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGL 438

Query: 159 TKLAREYFVQM------PNKDIVAWNAMITAYVDAGNMAQASELF------NLMPQRNVW 206
           +  A + F QM      PN  +V+WN++I  +   G +A+A  +F       +MP  N+ 
Sbjct: 439 SGEALKLFFQMQLESVPPN--VVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMP--NLI 494

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           TW  M+    +NG    AM +   M      PN  + TS L+ C  M   +L H  AI  
Sbjct: 495 TWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSM--ALLKHGRAIH- 551

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           G+     L+          D   +   ++ A+  F+    K++  + AMI AY++HG   
Sbjct: 552 GYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAR 611

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF +M K G  PD IT   VLS CSH GL+++G K F  M      KP  EHY CL
Sbjct: 612 EALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCL 671

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
             +L   GQ+ EA+R +  MP H   H +LG+LL AC  + D+ +ADYI + L++L P +
Sbjct: 672 VKLLANDGQLDEALRTILTMPSHPDAH-ILGSLLTACGQNNDIELADYIAKWLLKLDPDN 730

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR 499
           SG YV  +NV+AA G+WD+ + +R  M E+ ++K+   S IEV  + H  +A     P  
Sbjct: 731 SGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKT 790

Query: 500 EMGYVVL 506
           E  YV L
Sbjct: 791 EEIYVTL 797



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 60/308 (19%)

Query: 2   SQFGCTGKVKEATKLF-DEMSQPDPVSCASMITVFLRNHDLP---KAEALFRAMPESQRN 57
           +QFG   K  E   +  +E  + D V+ ++++ V     DL    KA A +    + + +
Sbjct: 333 AQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHA-YCVKNDFEGD 391

Query: 58  IVAESAMIDGYVKAGRVDEARKVFD----------------------------------- 82
           +V  S +ID Y K GR+D AR+VF                                    
Sbjct: 392 VVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQL 451

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK 140
           E    NV SW SLI G+FK  QV E R +F  M     + N+++WTT++ G   NG  + 
Sbjct: 452 ESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSG 511

Query: 141 LEVI--------------SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA--- 183
             ++              S T+  +G    A+ K  R     +  +D+     +IT+   
Sbjct: 512 AMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMD 571

Query: 184 -YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G++  A  +F +   + ++ +NAMI  YA +G    A+ L   M +   +P+  T
Sbjct: 572 MYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHIT 631

Query: 243 CTSILTSC 250
            TS+L++C
Sbjct: 632 LTSVLSAC 639



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 179/438 (40%), Gaps = 49/438 (11%)

Query: 8   GKVKEATKLFDEMSQPD----PVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNIV 59
           G+++EA     +M   +    P    +++   +    LP A  L     +  P    N  
Sbjct: 30  GRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTFALNDF 89

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             S ++  Y K G  + A ++F +    NV+SW ++I  + +    +E   LF  + ++ 
Sbjct: 90  VISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEA--LFGYIKMQQ 147

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
             +     V+       ++    V+ W     G+    +  +  +  V +         +
Sbjct: 148 DGLPPDNFVL-----PNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVAT-------S 195

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G +  A ++F+ M +RN  TWN+M+  YA+NG    A+++   M   R    
Sbjct: 196 LVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREM---RLQGV 252

Query: 240 ETTCTSI---LTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD- 292
           E T  ++    T+C   E + E    H LA+  G E +  L       Y      F++  
Sbjct: 253 EVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFY------FKVGL 306

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A + F  +  KDVV+W  ++  Y+  G   +   +   M + G + D +T   +L+ 
Sbjct: 307 IEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAV 366

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKEAMRVVSKMPPH 408
            +    +  G K     + AY  K   E      S + D+  + G++  A RV S +   
Sbjct: 367 AADTRDLVLGMK-----AHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCV--R 419

Query: 409 ERDHVVLGALLGACRLHG 426
           ++D V+   +L AC   G
Sbjct: 420 KKDIVLWNTMLAACAEQG 437


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 237/457 (51%), Gaps = 30/457 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S ++D Y K G + +A++VFDE+   NV  + ++I+G  + + V+E R +F+ M    ++
Sbjct: 188 SPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAM--VDRD 245

Query: 122 VVSWTTVVLGCAHNGLIAK-LEVI----------------SWTTMCTGLERNAMTKLARE 164
            ++WTT+V G   NGL ++ L+V                 S  T C  L  +   K    
Sbjct: 246 SITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 305

Query: 165 YFVQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y ++ + + +I   +A++  Y    ++  A  +F  M  +N+ +W AMI  Y +NG    
Sbjct: 306 YTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEE 365

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTC 280
           A+++ + M      PN+ T  S+++SC  +    E    H +A+  G     +++     
Sbjct: 366 AVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y     G    +  A   F+ +   D VS+TA++  Y+  G   +   LF +ML  G K
Sbjct: 426 LY-----GKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVK 480

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+ +TF+GVLS CS +GLVEKG   F+ M + +G     +HY+C+ D+  R+G++KEA  
Sbjct: 481 PNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEE 540

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            + +M P   D +    LL ACRL GD+ +  +  E L++  P +  +YVL  ++HA++G
Sbjct: 541 FIRQM-PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKG 599

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           EW E A +R+ M +R+VKK    S I+ K + H   A
Sbjct: 600 EWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSA 636



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 178/426 (41%), Gaps = 74/426 (17%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           + R +P      V    ++  Y ++GR+  AR++FD + + N+++  +L+S    AR + 
Sbjct: 35  VLRTLPHPPPTYVLNH-LLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLP 93

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAH---------------------NGLIAKLEVIS 145
           +  RLF  MP   ++ VS+  ++ G +                      +G   +   I+
Sbjct: 94  DMDRLFASMP--QRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRIT 151

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVA----WNAMITAYVDAGNMAQASELFNLMP 201
            + M           L R+   Q+      A    W+ ++  Y   G +  A  +F+ M 
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMV 211

Query: 202 QRNVWTWN--------------------AMIDR-----------YARNGPEGAAMKLLNL 230
            +NV  +N                    AM+DR             +NG +  A+ +   
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271

Query: 231 MFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M       ++ T  SILT+C  +    E    HA  IR  ++    +       Y     
Sbjct: 272 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYS---- 327

Query: 288 GFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                  S RLA   F R+  K+++SWTAMI+ Y  +G G +  R+F+ M   G KP++ 
Sbjct: 328 ----KCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDF 383

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T   V+S C++   +E+G + F+ M+   G +P     S L  +  + G +++A R+  +
Sbjct: 384 TLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDE 442

Query: 405 MPPHER 410
           MP H++
Sbjct: 443 MPFHDQ 448



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 32/272 (11%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQR 56
           +G  G  +EA ++F EM     +P+  +  S+I+       L +  A F  M      + 
Sbjct: 357 YGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEG-AQFHCMALVSGLRP 415

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            I   SA++  Y K G +++A ++FDE+   +  S+T+L+SGY +  +  E   LF++M 
Sbjct: 416 YITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKML 475

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAK---------------LEVISWTTMCTGLERNAMT 159
           LK    N V++  V+  C+ +GL+ K               L    +T M     R+   
Sbjct: 476 LKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRL 535

Query: 160 KLAREYFVQMPN-KDIVAWNAMITAYVDAGNMA----QASELFNLMPQRNVWTWNAMIDR 214
           K A E+  QMP   D + W  +++A    G+M      A  L    PQ N  ++  +   
Sbjct: 536 KEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQ-NPASYVLLCSM 594

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           +A  G E + + LL    + R +  E  C+ I
Sbjct: 595 HASKG-EWSEVALLRRGMRDRQVKKEPGCSWI 625


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 162/547 (29%), Positives = 251/547 (45%), Gaps = 88/547 (16%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------ 54
            G + +A  +F+++ QPD VS  ++I   + +    +A  L   M  S            
Sbjct: 306 VGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSA 365

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                    + ++     ++D Y K   +++AR  F+ + E ++
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            +W ++ISGY +  +  E   LF  M    K  + +    L        A L+V+     
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMH---KEGIGFNQTTLSTILKS-TAGLQVVHVCRQ 481

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             GL         +  F    + DI   N++I +Y    ++  A  +F      ++ ++ 
Sbjct: 482 VHGLS-------VKSGF----HSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFT 530

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
           +MI  YA+ G    A+KL   M      P+   C+S+L +C  +              FE
Sbjct: 531 SMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLS------------AFE 578

Query: 270 QETSLTYKCTCHYVFWDWGFQLDV----------------NSARLAFERLEAKDVVSWTA 313
           Q   L      H     +GF LD+                + A  AF  L  + +VSW+A
Sbjct: 579 QGKQL------HVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSA 632

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI   + HGHG Q  +LF +MLK G  P+ IT V VL  C+HAGLV + +  F  M   +
Sbjct: 633 MIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELF 692

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           GFKP  EHY+C+ D+L RAG++ EA+ +V+KM P E +  V GALLGA R+H DV +   
Sbjct: 693 GFKPMQEHYACMIDLLGRAGKINEAVELVNKM-PFEANASVWGALLGAARIHKDVELGRR 751

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             E L  L+P  SG +VL AN++A+ G+W+  A+VR+ M + +VKK    S IEVK K +
Sbjct: 752 AAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVY 811

Query: 493 TLLAPMR 499
           T L   R
Sbjct: 812 TFLVGDR 818



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 187/418 (44%), Gaps = 39/418 (9%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A KL DE S+PD VS +++I+ + +N     A   F  M      +          +KA 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM--HLLGVKCNEFTFSSVLKAC 167

Query: 73  RVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + +  ++  ++        +EG+V+   +L+  Y K  +  + +RLFD +P   +NVVS
Sbjct: 168 SIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIP--ERNVVS 225

Query: 125 WTTV------------VLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLAREYFV 167
           W  +             +G  +  +++ ++     + S    CTGL  ++  K+   Y +
Sbjct: 226 WNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLI 285

Query: 168 QMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
           ++  + D  + NA++  Y   G++A A  +F  + Q ++ +WNA+I     +     A++
Sbjct: 286 KLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALE 345

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYV 283
           LL  M +S   PN  T +S L +C GM    L    H+  +++  E +  ++      Y 
Sbjct: 346 LLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYS 405

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
             D      +  AR+AF  L  KD+++W A+I  YS +    +   LF  M K G   ++
Sbjct: 406 KCDL-----LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQ 460

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            T   +L   +   +V   R+   L  ++ GF       + L D   +   V++A R+
Sbjct: 461 TTLSTILKSTAGLQVVHVCRQVHGLSVKS-GFHSDIYVVNSLIDSYGKCSHVEDAERI 517



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 17/254 (6%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I  Y    N   A +L +   + ++ +W+A+I  YA+NG  G A+   + M      
Sbjct: 95  NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
            NE T +S+L +C  + +  +    H + +  GFE +  +       Y   D      ++
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF----LD 210

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S RL F+ +  ++VVSW A+   Y       +   LF  M+ SG KP+E +   +++ C+
Sbjct: 211 SKRL-FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 355 HAGLVEKGRKTF---NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             GL +  R       L+   Y + P +   + L D+  + G + +A+ V  K+   + D
Sbjct: 270 --GLRDSSRGKIIHGYLIKLGYDWDPFSA--NALVDMYAKVGDLADAISVFEKIK--QPD 323

Query: 412 HVVLGALLGACRLH 425
            V   A++  C LH
Sbjct: 324 IVSWNAVIAGCVLH 337



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 58/250 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-------- 55
           +G    V++A ++F+E +  D VS  SMIT + +     +A  LF  M + +        
Sbjct: 505 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVC 564

Query: 56  -----------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                         +I A +++++ Y K G +D+A + F E+ E
Sbjct: 565 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 624

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEV 143
             + SW+++I G  +     +  +LF++M LK     N ++  +V+  C H GL+ + + 
Sbjct: 625 RGIVSWSAMIGGLAQHGHGRQALQLFNQM-LKEGVSPNHITLVSVLGACNHAGLVTEAK- 682

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-Q 202
           + + +M              E F   P ++   +  MI     AG + +A EL N MP +
Sbjct: 683 LYFESM-------------EELFGFKPMQE--HYACMIDLLGRAGKINEAVELVNKMPFE 727

Query: 203 RNVWTWNAMI 212
            N   W A++
Sbjct: 728 ANASVWGALL 737



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 24/246 (9%)

Query: 227 LLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSL-TYKCTCHY 282
           +LNL+ +  F P   + + +L+ C   + +   +  HA   + G   + S+  +    + 
Sbjct: 43  ILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS 102

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
              ++G+      AR   +     D+VSW+A+I  Y+ +G G      F  M   G K +
Sbjct: 103 KCRNFGY------ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           E TF  VL  CS    +  G++   ++  + GF+      + L  +  +  +  ++ R+ 
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL-----IELQPSSSGAYVLSANVHA 457
            ++P  ER+ V   AL  +C +       D+ GE +     + L       + LS+ V+A
Sbjct: 216 DEIP--ERNVVSWNALF-SCYVQ-----IDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267

Query: 458 ARGEWD 463
             G  D
Sbjct: 268 CTGLRD 273


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 266/531 (50%), Gaps = 51/531 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIV 59
           S +   G+  +A KLF  MS+ D V+   MI+ ++++  + ++   F  M  S    + +
Sbjct: 278 SMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAI 337

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S+++    K   ++  R++   I       +++  ++LI  YFK R V   +++F + 
Sbjct: 338 TFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQ- 396

Query: 116 PLKLKNVVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------K 160
                +VV +T ++ G  HNGL I  LE+  W      +  N +T              K
Sbjct: 397 -CNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVK-VKISPNEITLVSILPVIGGLLALK 454

Query: 161 LAREY--FVQMPNKD--IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           L RE   F+     D       A+I  Y   G M  A E+F  + +R++ +WN+MI R A
Sbjct: 455 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCA 514

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---------MLAHALAIRLG 267
           ++    AA+ +   M  S    +  + ++ L++C  +            M+ H+LA+ + 
Sbjct: 515 QSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDV- 573

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           + + T +     C           ++ +A   F+ ++ K++VSW ++I AY NHG     
Sbjct: 574 YSESTLIDMYAKCG----------NLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDS 623

Query: 328 FRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             LF  M+ KSG +PD+ITF+ ++S C H G V++G + F  M++ YG +P+ EHY+C+ 
Sbjct: 624 LCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVV 683

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+  RAG++ EA   V  M P   D  V G LLGA RLH +V +A     RL++L P +S
Sbjct: 684 DLFGRAGRLSEAYETVKSM-PFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNS 742

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           G YVL +N HA  GEW+   +VR  M ER V+K+  +S IE+    H  ++
Sbjct: 743 GYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKITHLFVS 793



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 34/373 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--R 114
           N    S++I  Y++ G++D A K+FD + + +   W  +++GY K    D   + F   R
Sbjct: 168 NEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMR 227

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M     N V++  V+  CA   LI     +    + +GL+     K              
Sbjct: 228 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIK-------------- 273

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N++++ Y   G    A +LF +M + +  TWN MI  Y ++G    ++     M  S
Sbjct: 274 ---NSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISS 330

Query: 235 RFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
             +P+  T +S+L S     EN+      H   +R     +  LT          D  F+
Sbjct: 331 GVLPDAITFSSLLPSVSK-FENLEYCRQIHCYIMRHSISLDIFLT------SALIDAYFK 383

Query: 291 L-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V+ A+  F +  + DVV +TAMI  Y ++G       +F  ++K    P+EIT V +
Sbjct: 384 CRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSI 443

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L        ++ GR+    + +  GF  R      + D+  + G++  A  +  ++   +
Sbjct: 444 LPVIGGLLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRL--SK 500

Query: 410 RDHVVLGALLGAC 422
           RD V   +++  C
Sbjct: 501 RDIVSWNSMITRC 513



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 30/385 (7%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
           +++++  Y K GR D+A K+F  +   +  +W  +ISGY ++  ++E    F  M     
Sbjct: 273 KNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGV 332

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           L + +++++++        ++K E + +        R     + R       + DI   +
Sbjct: 333 LPDAITFSSLLPS------VSKFENLEYC-------RQIHCYIMRHSI----SLDIFLTS 375

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I AY     ++ A ++F+     +V  + AMI  Y  NG    A+++   + + +  P
Sbjct: 376 ALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISP 435

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           NE T  SIL    G+L   L    H   I+ GF+   ++   C    ++   G    +N 
Sbjct: 436 NEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNI--GCAVIDMYAKCG---RMNL 490

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F RL  +D+VSW +MI   +   +      +F +M  SG   D ++    LS C++
Sbjct: 491 AYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACAN 550

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
                 G+     M + +         S L D+  + G +K AM V   M   E++ V  
Sbjct: 551 LPSESFGKAIHGFMIK-HSLALDVYSESTLIDMYAKCGNLKAAMNVFDTM--KEKNIVSW 607

Query: 416 GALLGACRLHGDVRMADYIGERLIE 440
            +++ A   HG ++ +  +   ++E
Sbjct: 608 NSIIAAYGNHGKLKDSLCLFHEMVE 632



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 127/301 (42%), Gaps = 28/301 (9%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
            G+ Y+   ++  Y          ++F R+  +L ++  W +++      GL+ +     
Sbjct: 63  SGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFY 122

Query: 146 WTTMCTGLERNAMT-------KLAREYF------------VQMPNKDIVAWNAMITAYVD 186
           +  +C G+  +  T        +A + F            + M   + VA +++I AY++
Sbjct: 123 FKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVA-SSLIKAYLE 181

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G +  A +LF+ + Q++   WN M++ YA+ G   + +K  +LM   +  PN  T   +
Sbjct: 182 YGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCV 241

Query: 247 LTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           L+ C   L   L    H L +  G + E S+  K +   ++   G     + A   F  +
Sbjct: 242 LSVCASKLLIDLGVQLHGLVVVSGLDFEGSI--KNSLLSMYSKCG---RFDDAIKLFRMM 296

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
              D V+W  MI  Y   G   +    F  M+ SG  PD ITF  +L   S    +E  R
Sbjct: 297 SRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCR 356

Query: 364 K 364
           +
Sbjct: 357 Q 357


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 224/440 (50%), Gaps = 40/440 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+I  +  +G V+ AR+VFDE    +  +WT+LI+GY K     E  + F +M L+ ++
Sbjct: 146 NALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRS 205

Query: 122 VVSWTTV-VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           V + T   +L  A   L+   +   W             +  R   VQ+   D   ++A+
Sbjct: 206 VDAVTVASILRAA--ALVGDADFGRWV-------HGFYVEAGR---VQL---DGYVFSAL 250

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G+   A ++FN +P R+V  W  ++  Y ++     A++    M      PN+
Sbjct: 251 MDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPND 310

Query: 241 TTCTSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKCTCHYVFWDWGFQ 290
            T +S+L++C       +G L +       I +     T+L     KC            
Sbjct: 311 FTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCG----------- 359

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ A   FE +  K+V +WT +I   + HG       +F  MLKSG +P+E+TFVGVL
Sbjct: 360 -SIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVL 418

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CSH G VE+G++ F LM  AY  KP  +HY C+ D+L RAG +++A +++  M P + 
Sbjct: 419 AACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNM-PMKP 477

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
              VLGAL GAC +H    M ++IG  L+  QP+ SG+Y L AN++     W+  AQVRK
Sbjct: 478 SPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRK 537

Query: 471 KME-RRVKKVASFSQIEVKG 489
            M+  RV K   +S+IEV G
Sbjct: 538 LMKGLRVVKAPGYSRIEVDG 557



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 12/259 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+   NA+I A+ ++G +  A ++F+  P ++   W A+I+ Y +N   G A+K    M 
Sbjct: 141 DLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMR 200

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                 +  T  SIL +   + +       H   +  G  Q     +         D  F
Sbjct: 201 LRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFS-----ALMDMYF 255

Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           +      A   F  L  +DVV WT ++  Y          R F  ML     P++ T   
Sbjct: 256 KCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSS 315

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS C+  G +++GR     +             + L D+  + G + EA+RV   MP  
Sbjct: 316 VLSACAQMGALDQGRLVHQYI-ECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMP-- 372

Query: 409 ERDHVVLGALLGACRLHGD 427
            ++      ++    +HGD
Sbjct: 373 VKNVYTWTVIINGLAVHGD 391



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A++D Y K G +DEA +VF+ +   NVY+WT +I+G            +F  M 
Sbjct: 344 NVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCM- 402

Query: 117 LK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           LK     N V++  V+  C+H G +               E   + +L +  +   P  D
Sbjct: 403 LKSGIQPNEVTFVGVLAACSHGGFVE--------------EGKRLFELMKHAYHLKPEMD 448

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQR 203
              +  M+     AG +  A ++ + MP +
Sbjct: 449 --HYGCMVDMLGRAGYLEDAKQIIDNMPMK 476


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 238/453 (52%), Gaps = 33/453 (7%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           LF  MP  +RN+++ + +I+GY++ G ++ A+K+FDE+ E N+ +W ++I+G  +     
Sbjct: 119 LFSNMP--RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNK 176

Query: 107 EGRRLFDRMPLK--LKNVVSWTTVVLGCAH-NGLIAKLEVISWTTMCTGLERNAMTKLAR 163
           +   LF  M     L +  +  +V+ GCA    L+A  EV +    C G E ++      
Sbjct: 177 QALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKC-GFELSS------ 229

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
                      V  +++   Y+ +G+++   +L   MP R V  WN +I   A+NG    
Sbjct: 230 -----------VVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEE 278

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTC 280
            +   N+M  + F P++ T  S+L++C  +    +    HA  I+ G     ++      
Sbjct: 279 VLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLIS 338

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y          +  +  AF   E  DVV W++MI AY  HG G +   LF +M     +
Sbjct: 339 MYSRSGC-----LEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKME 393

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
            +E+TF+ +L  CSH+GL EKG + F+LM + Y  KPR EHY+C+ D+L RAG+++EA  
Sbjct: 394 ANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEG 453

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  MP  + D ++   LL AC+LH +  MA+ I E +I+L P  + +YVL +N+HA+  
Sbjct: 454 MIRSMPV-QPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASAR 512

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
            W   +Q+RK M +R V+K    S +E+K   H
Sbjct: 513 NWLNVSQIRKAMRDRSVRKEPGISWLELKNLVH 545


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 227/439 (51%), Gaps = 37/439 (8%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCA-----HNGLIAK 140
           NV+SW S+I+   ++    E  R F  M  L LK N  ++   +  C+     H+G  A 
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 141 LEVISW---------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
            + + +         + +     +    + AR  F ++ +++IV+W +MIT YV   +  
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSC 250
           +A  +F+ M +R+V +WN++I  YA+NG    +M++ + M +      N  T +++L +C
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 251 EGMLENMLA---HALAIRLGFEQE-----TSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
                  L    H   I++G E       + +   C C            V  AR AF+R
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCG----------KVEMARKAFDR 269

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +  K+V SW+AM+  Y  HGH  +   +F  M  +G KP+ ITFV VL+ CSHAGL+E+G
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
              F  MS  +  +P  EHY C+ D+L RAG +KEA  ++  M     D VV GALLGAC
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRP-DFVVWGALLGAC 388

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVAS 481
           R+H +V + +    +L EL P + G YVL +N++A  G W++  ++R  M+   + K   
Sbjct: 389 RMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPG 448

Query: 482 FSQIEVKGKDHTLLAPMRE 500
           FS +++KG+ H  L   RE
Sbjct: 449 FSLVDIKGRVHVFLVGDRE 467



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 30/260 (11%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           +PD    ++++ ++ +  +L  A  LF  +  S RNIV+ ++MI GYV+      A +VF
Sbjct: 108 EPDLFVSSALVDMYSKCGELRDARTLFDEI--SHRNIVSWTSMITGYVQNDDAHRALRVF 165

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLI 138
           D + E +V SW S+I+ Y +     E   +F RM    +   N V+ + V+L CAH+G  
Sbjct: 166 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 225

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
              + I    +  GLE N                 +    ++I  Y   G +  A + F+
Sbjct: 226 RLGKCIHDQVIKMGLESN-----------------VFVGTSIIDMYCKCGKVEMARKAFD 268

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE- 255
            M ++NV +W+AM+  Y  +G    A+++   M  +   PN  T  S+L +C   G+LE 
Sbjct: 269 RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEE 328

Query: 256 -----NMLAHALAIRLGFEQ 270
                  ++H   +  G E 
Sbjct: 329 GWHWFKAMSHEFDVEPGVEH 348



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 63/268 (23%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------------------- 53
           A ++FD M++ D +S  S+I V+ +N    ++  +F  M +                   
Sbjct: 161 ALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 220

Query: 54  ---SQR----------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
              SQR                N+   +++ID Y K G+V+ ARK FD + E NV SW++
Sbjct: 221 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 280

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI-------------- 138
           +++GY       E   +F  M +     N +++ +V+  C+H GL+              
Sbjct: 281 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEF 340

Query: 139 -AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITA-----YVDAGNMA 191
             +  V  +  M   L R    K A +    M  + D V W A++ A      VD G ++
Sbjct: 341 DVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEIS 400

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNG 219
            A +LF L P +N   +  + + YA  G
Sbjct: 401 -ARKLFELDP-KNCGYYVLLSNIYADAG 426



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           N   L  + ++  +V SW ++I   +  G   +  R F+ M K   KP+  TF   +  C
Sbjct: 27  NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC 86

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
           S    +  GR+     +  +GF+P     S L D+  + G++++A
Sbjct: 87  SALLDLHSGRQAHQ-QALIFGFEPDLFVSSALVDMYSKCGELRDA 130


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 234/494 (47%), Gaps = 65/494 (13%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           ++  Y     V  ARKVFDEI E NV     +I  Y       EG ++F  M        
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
               P  LK       +V+G   +G   K+ + S   +  GL     +      AR    
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQ------------- 192
           +M  +D+V+WN+++  Y                       DAG MA              
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 193 --ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               ++F  M ++++ +WN MI  Y +N     A++L + M    F P+  + TS+L +C
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 251 EGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDV 308
                +  A +L  ++ G+ +   L           D   +   ++ AR  FE ++++DV
Sbjct: 321 ----GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWTAMI AY   G G     LF++M  SG  PD I FV  L+ CSHAGL+E+GR  F L
Sbjct: 377 VSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 436

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHG 426
           M+  Y   PR EH +C+ D+L RAG+VKEA + + +MP  P+ER   V GALLGACR+H 
Sbjct: 437 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNER---VWGALLGACRVHS 493

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           +  +     ++L +L P  SG YVL +N++A  G W+E   +R  M+ + +KK    S +
Sbjct: 494 NTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 553

Query: 486 EVKGKDHTLLAPMR 499
           EV    HT L   R
Sbjct: 554 EVNRIIHTFLVGDR 567


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 242/443 (54%), Gaps = 30/443 (6%)

Query: 78  RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCA-- 133
           R +F +++  N ++WT+LI  Y     + +    +  M  +  + +S+T   L   CA  
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 134 -HNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDIVAWN 178
            H+ L A+L   + T +  G        NA+  +         AR  F +MP +D+++W 
Sbjct: 123 RHSALGAQLH--AQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWT 180

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            +I AY   G+M  A +LF+ +P +++ TW AM+  YA+N     A+++   +       
Sbjct: 181 GLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI 240

Query: 239 NETTCTSILTSCEGMLENMLAH---ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +E T   ++++C  +  +  A+    +A   GF    ++        ++   G   +V  
Sbjct: 241 DEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCG---NVEE 297

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F+ +  ++V S+++MI+ ++ HG      +LF  ML++G KP+ +TFVGVL+ CSH
Sbjct: 298 AYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSH 357

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           AGLV++G++ F  M + YG  P AE Y+C+ D+L RAG +++A+++V  M P E D  V 
Sbjct: 358 AGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETM-PMESDGAVW 416

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           GALLGA  +HG+  +A+   +RL EL+P + G Y+L +N +A+ G WD+ ++VRK + E+
Sbjct: 417 GALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREK 476

Query: 475 RVKKVASFSQIEVK-GKDHTLLA 496
            +KK   +S +E K G  H  +A
Sbjct: 477 NLKKNPGWSWVEAKNGMIHKFVA 499



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 22/214 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A+ID YVK G +  AR VFDE+ E +V SWT LI  Y +   +   R LFD +P
Sbjct: 144 DLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLP 203

Query: 117 LKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMT 159
             +K++V+WT +V G A N +                 I ++ ++   + C  L  +   
Sbjct: 204 --VKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYA 261

Query: 160 KLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
              R+           +++  +A+I  Y   GN+ +A ++F  M +RNV+++++MI  +A
Sbjct: 262 NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +G   AA+KL   M ++   PN  T   +LT+C
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTAC 355



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 62/273 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G ++ A  LFD +   D V+  +M+T + +N     A  +FR + +              
Sbjct: 190 GDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVI 249

Query: 55  --------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       N++  SA+ID Y K G V+EA  VF  + E N
Sbjct: 250 SACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERN 309

Query: 89  VYSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-NVVSWTTVVLGCAHNGLIAK-LEVIS 145
           V+S++S+I G+    +     +LF D +   +K N V++  V+  C+H GL+ +  ++ +
Sbjct: 310 VFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFA 369

Query: 146 WTTMCTGLERNA-----MTKL---------AREYFVQMP-NKDIVAWNAMITAYVDAGNM 190
               C G+   A     MT L         A +    MP   D   W A++ A    GN 
Sbjct: 370 SMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNP 429

Query: 191 AQA----SELFNLMPQRNVWTWNAMIDRYARNG 219
             A      LF L P  N+  +  + + YA  G
Sbjct: 430 DVAEIASKRLFELEPD-NIGNYLLLSNTYASAG 461


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 222/450 (49%), Gaps = 37/450 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGN--VYSWTSLISGYFKARQVDEGRRLFDRM--- 115
           ++++I  Y K   +  ARKVFDE +        + +LI+GY    +  +   LF +M   
Sbjct: 94  QTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKE 153

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
              +    ++    V  G  H G    L   S      G                    D
Sbjct: 154 GVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDG--------------------D 193

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N ++T YV  G++  A +LF+ MP++ + TWNAMI  YA+NG  G  + L   M  
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEF 253

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTCHYVFWDWGFQ 290
           +  +P+  T   +L+SC  +  +     +  R+   GF     L       Y        
Sbjct: 254 TGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCG---- 309

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  AR  F+ +  K+V+SWTA+I  Y  HG G    +LF  M+ S   PD   FV VL
Sbjct: 310 -NLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVL 368

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSHAGL EKG   F  M R YG +P  EHYSC+ D+L RAG+++EA +++  M   E 
Sbjct: 369 SACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSV-EP 427

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  V GALLGAC++H +V +A+   E++IE +P++ G YVL +N+ +  G  +   +VR 
Sbjct: 428 DGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRV 487

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
            M ER++KK    S +E +G+ H  LA  R
Sbjct: 488 MMRERKLKKEPGCSYVEYQGRIHLFLAGDR 517



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 58/241 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PE-------- 53
           G V  A KLFD M +   ++  +MI+ + +N        L+R M      P+        
Sbjct: 208 GSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267

Query: 54  ---------------SQR--------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                           QR        N   ++A+I+ Y + G + +AR +FD + E NV 
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVI 327

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT++I+GY    Q +   +LFD M    +L +  ++ +V+  C+H GL  K        
Sbjct: 328 SWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEK-------- 379

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM---PQRNV 205
              GL     T + R+Y +Q P  +   ++ ++     AG + +A +L   M   P   V
Sbjct: 380 ---GLYY--FTAMERDYGLQ-PGPE--HYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431

Query: 206 W 206
           W
Sbjct: 432 W 432



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 87/227 (38%), Gaps = 31/227 (13%)

Query: 199 LMPQRNVW--------TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           L P  N W        +WNA +   AR      A+ L   M  S   PN  T      SC
Sbjct: 7   LFPYANKWLDLQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSC 66

Query: 251 EGM---LENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF-E 301
             +   L     H   I+ G     F Q + ++  C C            + SAR  F E
Sbjct: 67  ASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCS----------TIASARKVFDE 116

Query: 302 RLEAKDV-VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
              ++++ V + A+I  YS +        LF +M K G   + +T +G++  C  AG + 
Sbjct: 117 NHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIH 174

Query: 361 KGRKT-FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            G  T  +  S  +G        +CL  +  R G V  A ++   MP
Sbjct: 175 LGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMP 221


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/534 (28%), Positives = 253/534 (47%), Gaps = 68/534 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-----PES-------- 54
           G +  A+KLFDEM+  D VS  S+I+ ++      +   LF  M     P S        
Sbjct: 199 GSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMRMEMEPNSVTMVVMLQ 258

Query: 55  --------------QRNIVAESAMIDGYVK----------AGRVDEARKVFDEIYEGNVY 90
                            ++ +  M+D  V+           G  +E    F EI E ++ 
Sbjct: 259 ACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEERDII 318

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           SW  LI+ Y     + E    F+ M  ++ + +   T+V+    N              C
Sbjct: 319 SWNILIAFYSFRGDIAEVAERFNEMRREVTSSIESLTLVVSAIAN--------------C 364

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
             L    M   +    ++    D V    ++  Y   G +  +++LF  +P RN  TW++
Sbjct: 365 ANLSEGGMLHCSA---IKTGLHDTVLMTCLLALYAKCGALEISAQLFRDIPHRNSITWSS 421

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIR-- 265
           M+  + +NG    A++L   M  S   PN    ++++   T    +      HA  IR  
Sbjct: 422 MMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLVIAYTHLGALQLGKATHAFFIRNL 481

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             + +E S   + +   ++   G    ++SA + F R+  KDVV+WT+MI  +  HG  F
Sbjct: 482 SSWPEEDSAPLETSLLNMYIRCG---SISSALICFNRVVVKDVVTWTSMIEGFGTHGLAF 538

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +  + F  ML+S  +P+ +TF+ +LS CSH+GLV +G + F+ M   +  +P   HY+C+
Sbjct: 539 EALKFFKSMLESEVQPNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCM 598

Query: 386 ADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
            D+L R+G++KEA+ V+ K+   P  R   + GALL A R+H D ++ +Y  E+L+EL+P
Sbjct: 599 VDLLGRSGKLKEALTVILKLVTCPDSR---IWGALLAASRVHEDKKLGEYAAEKLLELEP 655

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            + G Y L +N+ A+   W E  +VR+ M ER +KK   +S IEVKG  H  ++
Sbjct: 656 DNVGYYTLWSNIEASLERWGEVEEVRRVMHERDLKKKPGWSCIEVKGMIHGFVS 709



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 191/425 (44%), Gaps = 59/425 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++   + M++ YVK G +  A K+FDE+   ++ SWTS+ISGY        G +LF++M
Sbjct: 183 QDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKM 242

Query: 116 PLKLK-NVVSWTTVVLGCA-----------HNGLIAKLEVISWTTMCTGLERNAMTKLAR 163
            ++++ N V+   ++  C+           H+ +I K  ++  +   + L     T  + 
Sbjct: 243 RMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSG 302

Query: 164 E----YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           E    +F ++  +DI++WN +I  Y   G++A+ +E FN M +R V              
Sbjct: 303 EEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEM-RREV-------------- 347

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
                         +  + + T   S + +C  + E  + H  AI+ G       T   T
Sbjct: 348 --------------TSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGLHD----TVLMT 389

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C    +     L++ SA+L F  +  ++ ++W++M+  ++ +G   +   L+ +ML SG 
Sbjct: 390 CLLALYAKCGALEI-SAQL-FRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLASGL 447

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR---AEHYSCLADILRRAGQVK 396
           +P+      ++   +H G ++ G+ T     R     P    A   + L ++  R G + 
Sbjct: 448 QPNHDIISTLVIAYTHLGALQLGKATHAFFIRNLSSWPEEDSAPLETSLLNMYIRCGSIS 507

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSS-SGAYVLSA 453
            A+   +++    +D V   +++     HG    A    + ++  E+QP+S +   +LSA
Sbjct: 508 SALICFNRVVV--KDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVTFLSLLSA 565

Query: 454 NVHAA 458
             H+ 
Sbjct: 566 CSHSG 570



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 25/301 (8%)

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           C  L+  A+ ++     V    + +   + +IT Y    +   A  + N   + N   WN
Sbjct: 61  CNNLQ--ALKRIHASLIVSSGFQPLSVASKLITLYSQLNDFRSAFSICNSFEEPNTVIWN 118

Query: 210 AMIDRYARNGPEGAA------MKLLNLMFQSRFMPNETTCTSILTSCEGMLE-NMLAHAL 262
           ++I  +  +G  G A      M+ L +   S   P        + S    +E     H +
Sbjct: 119 SIIKSHVDSGLFGYALLQYGRMRELGVAHDSFTFP---IINQAIWSLGCRVEYGETVHCV 175

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           A+++GF Q+  + +  T   V+   G    + +A   F+ +  +D+VSWT++I  Y  +G
Sbjct: 176 AMKMGFGQD--VYFGNTMLEVYVKCG---SIGNASKLFDEMTHRDLVSWTSIISGYI-YG 229

Query: 323 HGF-QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
             F + F+LF +M +   +P+ +T V +L  CS    V +GR+  + + +      R+  
Sbjct: 230 ESFSRGFKLFNKM-RMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQ 288

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
            S L    +  G  +E     S++   ERD +    L+      GD+     + ER  E+
Sbjct: 289 NSILRMYTKTGGSGEEVETFFSEIE--ERDIISWNILIAFYSFRGDIA---EVAERFNEM 343

Query: 442 Q 442
           +
Sbjct: 344 R 344


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 260/504 (51%), Gaps = 35/504 (6%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G  +EA++++++M +    P+ ++   ++   + +  L   + +   + ++    +I  +
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+I  Y + G + +AR VFD++   +V SWT++I G  K+    E   ++  M      
Sbjct: 367 NALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVE 426

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N V++T+++  C+    +     I    +  GL  +A                    N 
Sbjct: 427 PNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG-----------------NT 469

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G++  A ++F+ M QR++  +NAMI  YA +     A+KL + + +    P+
Sbjct: 470 LVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD 529

Query: 240 ETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           + T  ++L +C   G LE     H L  + GF  +TS+       Y           + A
Sbjct: 530 KVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCG-----SFSDA 584

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            + FE++  ++V+SW A+I   + HG G    +LF RM   G KPD +TFV +LS CSHA
Sbjct: 585 SIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHA 644

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL+E+GR+ F  MS+ +   P  EHY C+ D+L RAGQ+ EA  ++  M P + +  + G
Sbjct: 645 GLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTM-PFQANTRIWG 703

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALLGACR+HG+V +A+   E  ++L   ++  YV  ++++AA G WD  A++RK ME+R 
Sbjct: 704 ALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRG 763

Query: 476 VKKVASFSQIEVKGKDHTLLAPMR 499
           V K    S I+V  K H  +A  R
Sbjct: 764 VTKEPGRSWIQVGDKLHYFVAEDR 787



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 216/526 (41%), Gaps = 103/526 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-----EALFRAMPESQR-NIVAE 61
           G +++A KL  +M Q       + I  FL +   P A     E  F+AM      ++   
Sbjct: 105 GYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVA 164

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
           + +++ Y K G ++EAR+VFD++ + +V SWT  I GY    + +    +F +M      
Sbjct: 165 NCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV 224

Query: 116 ---------------PLKLK----------NVVSWTTVVLGCAHNGLIAKL--------- 141
                          P  LK          N    +   +G A   + AK          
Sbjct: 225 PNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV 284

Query: 142 -------EVISWTTMCTGLERNAMTKLAREYFVQ------MPNK---------------- 172
                  ++I+W TM  GL      + A E + Q      MPNK                
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAAL 344

Query: 173 -----------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                            DI   NA+I+ Y   G++  A  +F+ M +++V +W AMI   
Sbjct: 345 HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGL 404

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQET 272
           A++G    A+ +   M Q+   PN  T TSIL +C     LE     H   +  G   + 
Sbjct: 405 AKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDA 464

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +       Y          V  AR  F+R+  +D+V++ AMI  Y+ H  G +  +LF 
Sbjct: 465 HVGNTLVNMYSMCG-----SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFD 519

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           R+ + G KPD++T++ +L+ C+++G +E  R+   L+ R  GF       + L     + 
Sbjct: 520 RLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLV-RKGGFFSDTSVGNALVSTYAKC 578

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           G   +A  V  KM   +R+ +   A++G    HG  + A  + ER+
Sbjct: 579 GSFSDASIVFEKMT--KRNVISWNAIIGGSAQHGRGQDALQLFERM 622



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/529 (22%), Positives = 224/529 (42%), Gaps = 81/529 (15%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           PD  +  ++I ++++   + +A  +++ +   +R + + +AM+ GY++ G +++A K+  
Sbjct: 56  PDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLR 115

Query: 83  EIYE-------GNVYSWTS--------------------------------LISGYFKAR 103
           ++ +         + S+ S                                +++ Y K  
Sbjct: 116 QMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCG 175

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTM 149
            ++E R +FD+M  + K+VVSWT  + G A  G       +  K+E        I++ ++
Sbjct: 176 SIEEAREVFDKM--EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISV 233

Query: 150 CTGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                  A  K  +    ++ N     D     A++  Y   G+     ++F  +  R++
Sbjct: 234 LNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDL 293

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHAL 262
             WN MI   A  G    A ++ N M +   MPN+ T   +L +C     +      H+ 
Sbjct: 294 IAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSR 353

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
             + GF  +  +       Y          +  ARL F+++  KDV+SWTAMI   +  G
Sbjct: 354 VAKAGFTSDIGVQNALISMYSRCG-----SIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
            G +   ++  M ++G +P+ +T+  +L+ CS    +E GR+    +  A G    A   
Sbjct: 409 FGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVG 467

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE-- 440
           + L ++    G VK+A +V  +M   +RD V   A++G    H   + A  + +RL E  
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMI--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG 525

Query: 441 LQPSSSGAYVLSANVHAARG--EWDEFAQVRKKMERRVKKVASFSQIEV 487
           L+P     Y+   N  A  G  EW       +++   V+K   FS   V
Sbjct: 526 LKPDKV-TYINMLNACANSGSLEW------AREIHTLVRKGGFFSDTSV 567



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 134/282 (47%), Gaps = 32/282 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
           S +   G +K+A  +FD+M + D +S  +MI    ++    +A  +++ M ++  + N V
Sbjct: 371 SMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRV 430

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRM 115
             +++++       ++  R++  ++ E     + +   +L++ Y     V + R++FDRM
Sbjct: 431 TYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490

Query: 116 PLKLKNVVSWTTVVLG-CAHN---------------GLIAKLEVISWTTMCTGLERNAMT 159
               +++V++  ++ G  AHN               GL  K + +++  M      +   
Sbjct: 491 I--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL--KPDKVTYINMLNACANSGSL 546

Query: 160 KLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           + ARE    +       D    NA+++ Y   G+ + AS +F  M +RNV +WNA+I   
Sbjct: 547 EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGS 606

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           A++G    A++L   M      P+  T  S+L++C   G+LE
Sbjct: 607 AQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLE 648



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 28/235 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +   G VK+A ++FD M Q D V+  +MI  +  ++   +A  LF  + E   + + V  
Sbjct: 474 YSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 533

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS----LISGYFKARQVDEGRRLFDRMPL 117
             M++    +G ++ AR++   + +G  +S TS    L+S Y K     +   +F++M  
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT- 592

Query: 118 KLKNVVSWTTVVLGCAHNG-------LIAKL-------EVISWTTMCTGLERNAMTKLAR 163
             +NV+SW  ++ G A +G       L  ++       +++++ ++ +      + +  R
Sbjct: 593 -KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGR 651

Query: 164 EYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
            YF  M         I  +  M+     AG + +A  L   MP Q N   W A++
Sbjct: 652 RYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALL 706


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 237/471 (50%), Gaps = 56/471 (11%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLK 118
           AG +  A+++FD+I + N + + SLI GY  +    +   LF RM            P  
Sbjct: 35  AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFV 94

Query: 119 LKN-----------VVSWTTVVLGCA-----HNGLIAKLEV-------------ISWTTM 149
           LK            +V    + LG        N LIA   V             I+  T+
Sbjct: 95  LKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL 154

Query: 150 CTGLERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
              + RNA+  +         A+  F +   K++V+W +MI+AY   G++  A ++F+ M
Sbjct: 155 IDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQM 214

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
           P +NV +WN+MI  Y R G    A+ L N M  SR +P+E T  SIL +C  + + ++  
Sbjct: 215 PGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGK 274

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYS 319
            +     +       Y  T +    D   +   V +A   F  +  K++VSW  +I A +
Sbjct: 275 KIH---NYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALA 331

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HG G +  +LF  M   GT PDEIT  G+LS CSH+GLV+ G   F+ M   Y      
Sbjct: 332 LHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 391

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY+C+ D+L R G + EA+ ++ +M P + D VV GALLGACR+HG+V +   I ++L+
Sbjct: 392 EHYACMVDLLGRGGLLGEAIELIGRM-PMKPDVVVWGALLGACRIHGNVEIGKQILKQLL 450

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
           EL+P S G YVL +N++     W++  ++RK M +R +KK  + S IE+ G
Sbjct: 451 ELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDG 501



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 25/242 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           ++I V++    +  A  LF  + +    +I+  +A++D Y K G +  A+ +FD   E N
Sbjct: 128 ALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKN 187

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL 141
           V SWTS+IS Y +   ++  R++FD+MP   KNVVSW +++      G       L  K+
Sbjct: 188 VVSWTSMISAYAQHGSIEVARQIFDQMP--GKNVVSWNSMISCYLREGQYREALDLFNKM 245

Query: 142 E----------VISWTTMCTGLERNAMTKLAREYFVQMPNK---DIVAWNAMITAYVDAG 188
                      ++S    C+ L    M K    Y   + NK    +  +N++I  Y   G
Sbjct: 246 RNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYI--LSNKGAYGVTLYNSLIDMYAKCG 303

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            +  A ++F  MP +N+ +WN +I   A +G    A+KL   M     +P+E T T +L+
Sbjct: 304 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 363

Query: 249 SC 250
           +C
Sbjct: 364 AC 365



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 127/307 (41%), Gaps = 72/307 (23%)

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           DAG++  A  +F+ +PQ N + +N++I  Y+ +     A+ L   M  S   PNE T   
Sbjct: 34  DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93

Query: 246 ILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDV---- 293
           +L +C       E +L H LAI+LG     F Q   +     C  +        D+    
Sbjct: 94  VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 153

Query: 294 --------------------NSARLAFERLEAKDVVSWTAMILAYSNHGH---GFQVF-- 328
                               +SA+  F+R + K+VVSWT+MI AY+ HG      Q+F  
Sbjct: 154 LIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 213

Query: 329 --------------------------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
                                      LF +M  S   PDE T V +L+ CS  G +  G
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 273

Query: 363 RKTFNLM---SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           +K  N +     AYG       Y+ L D+  + G V  A+ +  +MP   ++ V    ++
Sbjct: 274 KKIHNYILSNKGAYG----VTLYNSLIDMYAKCGPVVTALDIFLEMPG--KNLVSWNVII 327

Query: 420 GACRLHG 426
           GA  LHG
Sbjct: 328 GALALHG 334



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G ++ A ++FD+M   + VS  SMI+ +LR     +A  LF  M  S+  +V +
Sbjct: 196 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR--VVPD 253

Query: 62  SAMIDGYVKA----GRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFD 113
            A +   + A    G +   +K+ + I        V  + SLI  Y K   V     +F 
Sbjct: 254 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 313

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLERNAMT 159
            MP   KN+VSW  ++   A +G       L  +++        I+ T + +    + + 
Sbjct: 314 EMP--GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 371

Query: 160 KLAREYFVQMP-----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
            +   YF +M       ++I  +  M+      G + +A EL   MP + +V  W A++
Sbjct: 372 DMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALL 430


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 266/524 (50%), Gaps = 37/524 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIV 59
           S +   G+  +A+KLF  MS+ D V+   MI+ ++++  + ++   F  M  S    + +
Sbjct: 282 SMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAI 341

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S+++    K   ++  +++   I       +++  ++LI  YFK R V   + +F + 
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ- 400

Query: 116 PLKLKNVVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------K 160
                +VV +T ++ G  HNGL I  LE+  W      +  N +T              K
Sbjct: 401 -CNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVK-VKISPNEITLVSILPVIGILLALK 458

Query: 161 LARE---YFVQ--MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           L RE   + ++    N+  +   A+I  Y   G M  A E+F  + +R++ +WN+MI R 
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGC-AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRC 517

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
           A++    AA+ +   M  S    +  + ++ L++C  +       A+    GF  + SL 
Sbjct: 518 AQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIH---GFMIKHSLA 574

Query: 276 YKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                     D   +  ++ +A   F+ ++ K++VSW ++I A  NHG       LF  M
Sbjct: 575 SDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEM 634

Query: 335 L-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           + KSG +PD+ITF+ ++S C H G V++G + F  M+  YG +P+ EHY+C+ D+  RAG
Sbjct: 635 VEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAG 694

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           ++ EA   V  M P   D  V G LLGACRLH +V +A+    +L++L PS+SG YVL +
Sbjct: 695 RLTEAYETVKSM-PFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLIS 753

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           N HA   EW+   +VR  M ER V+K+  +S IE+  + H  ++
Sbjct: 754 NAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVS 797



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 30/385 (7%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
           +++++  Y K GR D+A K+F  +   +  +W  +ISGY ++  ++E    F  M     
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           L + +++++++        ++K E + +   C  +    M            + DI   +
Sbjct: 337 LPDAITFSSLLPS------VSKFENLEY---CKQIHCYIMR--------HSISLDIFLTS 379

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I AY     ++ A  +F+     +V  + AMI  Y  NG    ++++   + + +  P
Sbjct: 380 ALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISP 439

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           NE T  SIL     +L   L    H   I+ GF+   ++   C    ++   G    +N 
Sbjct: 440 NEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI--GCAVIDMYAKCG---RMNL 494

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   FERL  +D+VSW +MI   +   +      +F +M  SG   D ++    LS C++
Sbjct: 495 AYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
                 G+     M + +         S L D+  + G +K AM V   M   E++ V  
Sbjct: 555 LPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTM--KEKNIVSW 611

Query: 416 GALLGACRLHGDVRMADYIGERLIE 440
            +++ AC  HG ++ +  +   ++E
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVE 636



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 160/373 (42%), Gaps = 34/373 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--R 114
           N    S++I  Y++ G++D   K+FD + + +   W  +++GY K   +D   + F   R
Sbjct: 172 NEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMR 231

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M     N V++  V+  CA   LI     +    + +G++     K              
Sbjct: 232 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK-------------- 277

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N++++ Y   G    AS+LF +M + +  TWN MI  Y ++G    ++     M  S
Sbjct: 278 ---NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS 334

Query: 235 RFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
             +P+  T +S+L S     EN+      H   +R     +  LT          D  F+
Sbjct: 335 GVLPDAITFSSLLPSVSK-FENLEYCKQIHCYIMRHSISLDIFLT------SALIDAYFK 387

Query: 291 L-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V+ A+  F +  + DVV +TAMI  Y ++G       +F  ++K    P+EIT V +
Sbjct: 388 CRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSI 447

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L        ++ GR+    + +  GF  R      + D+  + G++  A  +  ++   +
Sbjct: 448 LPVIGILLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL--SK 504

Query: 410 RDHVVLGALLGAC 422
           RD V   +++  C
Sbjct: 505 RDIVSWNSMITRC 517



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 29/308 (9%)

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           ++ G+   A  + + I  G+ Y+   ++  Y       +  ++F R+ L+  ++  W ++
Sbjct: 51  LRQGKQVHAFLIVNSI-SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSI 109

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMT-------KLAREYF------------VQM 169
           +     NGL+ +     +  +C G+  +  T        +A + F            + M
Sbjct: 110 ISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGM 169

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
              + VA +++I AY++ G +   S+LF+ + Q++   WN M++ YA+ G   + +K  +
Sbjct: 170 DCNEFVA-SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS 228

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
           +M   +  PN  T   +L+ C   L   L    H L +  G + E S+  K +   ++  
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI--KNSLLSMYSK 286

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            G     + A   F  +   D V+W  MI  Y   G   +    F  M+ SG  PD ITF
Sbjct: 287 CG---RFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343

Query: 347 VGVLSDCS 354
             +L   S
Sbjct: 344 SSLLPSVS 351


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 258/527 (48%), Gaps = 96/527 (18%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           ++  Y K GR+++AR++FD ++  ++ SW +++SGY   R      R+F RM L+    N
Sbjct: 173 LVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPN 232

Query: 122 VVSWTTVVLGCAHNGLI-----------------------------AKLEVISWTTMCTG 152
            V+WT+++   A  GL                              A +  + W     G
Sbjct: 233 SVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHG 292

Query: 153 -----------LERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
                        +NA+            A + F+++ NK++V+WNA+I++Y ++G   +
Sbjct: 293 YVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDE 352

Query: 193 ASELFNLMPQR----------NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           A   F  M +           NV +W+A+I  +A  G    +++L   M  ++ M N  T
Sbjct: 353 AYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVT 412

Query: 243 CTSILTSCEGM-------------LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            +S+L+ C  +             + NM++  + +  G     ++  KC           
Sbjct: 413 ISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGL---INMYMKCG---------- 459

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D     L F+ +E +D++SW ++I  Y  HG G    R F  M+++  KPD ITFV +
Sbjct: 460 --DFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAI 517

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSHAGLV  GR  F+ M   +  +P  EHY+C+ D+L RAG +KEA  +V  MP  E
Sbjct: 518 LSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPI-E 576

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            +  V GALL +CR++ D+ + +    +++ L+   +G+++L +N++AA G WD+ A+VR
Sbjct: 577 PNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVR 636

Query: 470 KKMERR-VKKVASFSQIEVKGKDHTLLA-PMREMG----YVVLKEVD 510
                + +KK+   S IEV+ K +T  A  +   G    YV+L+E++
Sbjct: 637 VSARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILEELN 683



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 26/219 (11%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF----- 112
           +  ++A+I  Y K   + +A KVF EI   N+ SW +LIS Y ++   DE    F     
Sbjct: 303 LFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEK 362

Query: 113 ---DRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEVISWTTMCTGLE-------R 155
              D   L   NV+SW+ V+ G A+ G       L  ++++      C  +         
Sbjct: 363 SDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAE 422

Query: 156 NAMTKLARE---YFVQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
            A   L RE   Y ++ M + +I+  N +I  Y+  G+  +   +F+ +  R++ +WN++
Sbjct: 423 LAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSL 482

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           I  Y  +G    A++  N M ++R  P+  T  +IL++C
Sbjct: 483 IGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSAC 521



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 68/341 (19%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVV---------------------LGC 132
           LI+ Y +   +   R++FD +PL+ L +++ W +++                     LG 
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD-IVAWNAMITAYVDAGNMA 191
             +G    L + +    C+ L  + + ++   + +QM  ++ +   N ++  Y   G M 
Sbjct: 129 LPDGFTLPLVIRA----CSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRME 184

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS-- 249
            A +LF+ M  R++ +WN M+  YA N     A ++   M      PN  T TS+L+S  
Sbjct: 185 DARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHA 244

Query: 250 -CEGMLENML--------------AHALAIRL-----------GFEQETSLTYKCTCHYV 283
            C G+ +  L              A ALA+ L           G E    +       Y+
Sbjct: 245 RC-GLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYL 303

Query: 284 F------WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           F        +G    +  A   F  ++ K++VSW A+I +Y+  G   + +  F  M KS
Sbjct: 304 FVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKS 363

Query: 338 GT------KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            +      +P+ I++  V+S  ++ G  EK  + F  M  A
Sbjct: 364 DSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLA 404



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 12/207 (5%)

Query: 180 MITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           +I  Y     ++ A ++F+ +P     ++  WN++I     +G    A++L   M +  F
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 237 MPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           +P+  T   ++ +C  +  + L    H  A+++GF     +  +    Y     G    +
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMY-----GKLGRM 183

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             AR  F+ +  + +VSW  M+  Y+ +       R+F RM   G +P+ +T+  +LS  
Sbjct: 184 EDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSH 243

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +  GL ++  + F +M R  G +  AE
Sbjct: 244 ARCGLYDETLELFKVM-RTRGIEIGAE 269



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 27/222 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQ 55
           S F   G+ +++ +LF +M       + V+ +S+++V   L   +L +    +       
Sbjct: 383 SGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMS 442

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            NI+  + +I+ Y+K G   E   VFD I   ++ SW SLI GY      +   R F+ M
Sbjct: 443 DNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEM 502

Query: 116 ---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
               +K  N +++  ++  C+H GL+A               RN   ++  E+ ++ PN 
Sbjct: 503 IRARMKPDN-ITFVAILSACSHAGLVAA-------------GRNLFDQMVTEFRIE-PNV 547

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID 213
           +  A   M+     AG + +A+++   MP + N + W A+++
Sbjct: 548 EHYA--CMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLN 587


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/490 (30%), Positives = 240/490 (48%), Gaps = 36/490 (7%)

Query: 34  VFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD--EIYEGNVYS 91
           V  R  D+  A  +F     S +N+V+ + MI GY + G V++A+++FD  E+   +  S
Sbjct: 186 VIKRCADMGSALKIFSGF--SVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTIS 243

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           W S+ISGY      DE   +F  + ++     +  +  +V+  CA    + + + +    
Sbjct: 244 WNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQA 303

Query: 149 MCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           +  GL  N                 K A+  F  +  +D   WN +I+ Y     +    
Sbjct: 304 VVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQ 363

Query: 195 ELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            L   M     + NV+TWN +I  +  NG    A++L   M  S   P+  T   IL +C
Sbjct: 364 NLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPAC 423

Query: 251 E---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                +      HA +IR G+E +  +       Y          +  A   + R+   +
Sbjct: 424 ARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG-----SIKHAMQVYNRISNPN 478

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +VS  AM+ AY+ HGHG +   LF  ML +G +PD +TF+ VLS C HAG VE G + F+
Sbjct: 479 LVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFD 538

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
           LM+  Y   P  +HY+C+ D+L RAG++ EA  +V K+ P + D V+ GALLG C + G+
Sbjct: 539 LMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKI-PRKPDSVMWGALLGGCVIWGN 596

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           V + +   E LIEL+P+++G YVL AN++A  G W +  + R+ + +R + K    S IE
Sbjct: 597 VELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIE 656

Query: 487 VKGKDHTLLA 496
            +   H  L+
Sbjct: 657 DREDIHVFLS 666



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 176/410 (42%), Gaps = 57/410 (13%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           E+ ++  Y + G +D+A  VF ++ + N+YSWT+++S +      +E   LF+++ L   
Sbjct: 97  ETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDI 156

Query: 121 NVVSWT-TVVLGCAHNGLIAKLEVISWTTMCTG--LERNAMTKLAREYFVQMPNKDIVAW 177
            +  +   VVL      L   L V+       G  ++R A    A + F     K++V++
Sbjct: 157 GLEFFVFPVVL-----KLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSY 211

Query: 178 NAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQS 234
           N MI  Y + GN+ +A ELF+ M    ++  +WN+MI  YA N     A+ +  +L+ + 
Sbjct: 212 NTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEE 271

Query: 235 RFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
               +  T  S+L +C  M         HA A+  G    T +       Y   +     
Sbjct: 272 GIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCE----- 326

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYS-------------------------------- 319
           D+ +A+LAF+ +  +D  +W  +I  Y+                                
Sbjct: 327 DLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIIS 386

Query: 320 ---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
               +GH     RLF  M  S  +PD  T   +L  C+    + +G++  +  S   G++
Sbjct: 387 GHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQV-HAHSIRQGYE 445

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                 + L D+  + G +K AM+V +++     + V   A+L A  +HG
Sbjct: 446 LDVHIGAALVDMYAKCGSIKHAMQVYNRIS--NPNLVSQNAMLTAYAMHG 493



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +K A ++++ +S P+ VS  +M+T +  +    +  ALFR M  +  + + V   +++
Sbjct: 462 GSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVL 521

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVY----SWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
              V AG V+   + FD +   NV      +T ++    +A ++DE   L  ++P K  +
Sbjct: 522 SSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDS 581

Query: 122 VVSWTTVVLGC 132
           V+ W  ++ GC
Sbjct: 582 VM-WGALLGGC 591



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           + +T  S+L SC  +      HA  ++ GF     +  K     +   +G    ++ A L
Sbjct: 61  DSSTYASLLESCRTLNLGKQVHAHTLKTGFHGHEFVETK-----LLQMYGRFGCLDDANL 115

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F ++  +++ SWTA++  + +HG+  +   LF ++       +   F  VL  C    +
Sbjct: 116 VFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRV 175

Query: 359 VEKGRK 364
           +E GR+
Sbjct: 176 LELGRQ 181


>gi|302824792|ref|XP_002994036.1| hypothetical protein SELMODRAFT_138059 [Selaginella moellendorffii]
 gi|300138139|gb|EFJ04918.1| hypothetical protein SELMODRAFT_138059 [Selaginella moellendorffii]
          Length = 524

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/512 (29%), Positives = 261/512 (50%), Gaps = 36/512 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVS--CASMITVFLRNHDLPKAEALFRAMPESQR----N 57
           +G  G + +A  +FD ++  D     C +MIT   +N D   A  +F++MP+S++    +
Sbjct: 2   YGRCGSLSDARLVFDSIASKDRSIDLCNAMITTCSQNGDAAGAHTVFQSMPKSRKMRTDD 61

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           + A ++MI  Y KA  V +A+++FD +   +  +WT++++ Y +     + + LFD MP 
Sbjct: 62  LTASNSMIAAYGKAKSVADAKRLFDRMERRDEVTWTAVVAVYAQNGHSRDAKLLFDAMPR 121

Query: 118 KLKNVVSWTTVVLGCAHNG-------LIAKLE---VISWTTMCTGLERNAMTKLAREYFV 167
           +   ++  T ++  CA  G       L  ++E   V SW  + + L R+   + AR  F 
Sbjct: 122 R--GIIVATAMLGVCARGGQAHQVWDLFTEMEGRDVFSWGVLISVLSRHGRMQDARFVFD 179

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +MP +  V+W   ITAY   G++ +A  LF+ MPQ +V TW +++  YA+ G    A++L
Sbjct: 180 KMPLRSTVSWTTTITAYAKCGDLDEARRLFDAMPQPDVITWTSLMTAYAQGGLSREAVEL 239

Query: 228 LNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
             LM       ++ + + +L +C     + E    H     LG   +  +T      Y  
Sbjct: 240 FKLMDLEGVEADKYSFSIVLDACARLSDVAEGRRVHRTIAELG-PMDVVVTNSLLNMY-- 296

Query: 285 WDWGFQLDVNSARLAFERLEAKD--VVSWTAMILAYSNHG---HGFQVFRLFARMLKSGT 339
              G   ++  A  AFE + A    V +W A+I AY+ +G     F  FR  A  L    
Sbjct: 297 ---GKCGNMAEAVAAFEGVAATQRVVATWNALIAAYTENGWHESAFGAFR--ALNLDGVV 351

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P+ ITF+G+ + CSH G +E  R  F  M+  +G  P A+HY C++D+L R G++ E+ 
Sbjct: 352 QPNAITFIGIFTACSHTGKLEDARDYFLCMAPDFGVTPVADHYVCMSDLLGRVGRLVESE 411

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++S MP H  D V    L+G+CR H +  +A+   E +    P     Y+L +N++AA 
Sbjct: 412 ELISSMPFHP-DPVAWLGLMGSCRTHLNADVAERAAEHVYVSDPGCPSPYILLSNIYAAL 470

Query: 460 GEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           G   +  ++R+ M+ R VK   + + ++VK +
Sbjct: 471 GRTKDLLRIRRLMKMRGVKNNQALAYVQVKDR 502


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/424 (30%), Positives = 217/424 (51%), Gaps = 48/424 (11%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133
           V +A KVF E+ + NV++WT++++ +     +   RRLFD  P                 
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAP----------------- 52

Query: 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
                 + +V+ W  + +G         ARE F +MP+ D+++WN +++ Y + G +   
Sbjct: 53  ------QCDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELF 106

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-LMFQSRFMPNETTCTSILTSCE- 251
            ++F  MP RNV++WN +I  Y RNG    A++    ++     +PN+ T  ++L++C  
Sbjct: 107 VKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSR 166

Query: 252 -GMLE-NMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
            G LE     H  A  +G++           +  KC              +  A   F+ 
Sbjct: 167 LGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGV------------IEKALDVFDG 214

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           L+ KD+++W  +I + + H H      LF  M ++G +PD +TFVG+LS C+H GLV  G
Sbjct: 215 LDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNG 274

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
              F  M   Y   P+ EHY C+ D+L RAG + +A+ +V KM P E D V+  ALLGAC
Sbjct: 275 FLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKM-PMEPDVVIWAALLGAC 333

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVAS 481
           R + +V MA+   +RLIEL+P++ G +V+ +N++   G   + A+++  M +   +KV  
Sbjct: 334 RXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPG 393

Query: 482 FSQI 485
            S I
Sbjct: 394 CSVI 397



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 133/272 (48%), Gaps = 25/272 (9%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           V +A K+F EM   +  +  +++   +  HD+  A  LF   P  Q ++V  + ++ GY+
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAP--QCDVVLWNVIVSGYI 67

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
           + G +  AR++FD + + +V SW +++SGY    +V+   ++F+ MP   +NV SW  ++
Sbjct: 68  ELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMP--ARNVYSWNGLI 125

Query: 130 LGCAHNGLIAK-LE-----------------VISWTTMCTGLERNAMTKLAREYFVQMPN 171
            G   NGL  + LE                 V++  + C+ L    + K    Y   +  
Sbjct: 126 GGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGY 185

Query: 172 K-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           K ++   NA+I  Y   G + +A ++F+ +  +++ TWN +I+  A +     A+ L   
Sbjct: 186 KGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEG 245

Query: 231 MFQSRFMPNETTCTSILTSCE--GMLENMLAH 260
           M ++   P+  T   IL++C   G++ N   H
Sbjct: 246 MKRAGERPDGVTFVGILSACTHMGLVRNGFLH 277



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 102/265 (38%), Gaps = 64/265 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LFD M   D +S  ++++ +  N ++     +F  MP   RN+ + + +I G
Sbjct: 70  GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMP--ARNVYSWNGLIGG 127

Query: 68  YVKAGRVDEARKVF---------------------------------------DEI-YEG 87
           YV+ G   EA + F                                       D I Y+G
Sbjct: 128 YVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKG 187

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK------- 140
           N++   +LI  Y K   +++   +FD   L +K++++W T++   A +   A        
Sbjct: 188 NLFVGNALIDMYAKCGVIEKALDVFD--GLDVKDIITWNTIINSLAMHXHAADALSLFEG 245

Query: 141 ----------LEVISWTTMCT--GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
                     +  +   + CT  GL RN            +    I  +  M+     AG
Sbjct: 246 MKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAG 305

Query: 189 NMAQASELFNLMP-QRNVWTWNAMI 212
            + QA ++   MP + +V  W A++
Sbjct: 306 LINQAVDIVRKMPMEPDVVIWAALL 330



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 56/238 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------PES 54
           S +   G+V+   K+F+EM   +  S   +I  ++RN    +A   F+ M       P  
Sbjct: 95  SGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPND 154

Query: 55  -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                          + N+   +A+ID Y K G +++A  VFD 
Sbjct: 155 YTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDG 214

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAK- 140
           +   ++ +W ++I+         +   LF+ M    +  + V++  ++  C H GL+   
Sbjct: 215 LDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNG 274

Query: 141 --------------LEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITA 183
                          ++  +  M   L R  +   A +   +MP   D+V W A++ A
Sbjct: 275 FLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGA 332


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 248/473 (52%), Gaps = 32/473 (6%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++ ++ +   L  A  +F  MPE  R++ + + M++GY + G ++EAR +FDE+ E + Y
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPE--RDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSY 185

Query: 91  SWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           SWT++++GY K  Q +E   L+    R+P    N+ + ++ V   A    I + + I   
Sbjct: 186 SWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGH 245

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            +  GL                 + D V W++++  Y   G + +A  +F+ +  ++V +
Sbjct: 246 IVRAGL-----------------DSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVS 288

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           W +MIDRY ++        L + +  S   PNE T + +L +C  +    L    H    
Sbjct: 289 WTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMT 348

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R+GF+  +  +      Y         ++ SAR   +     D+VS T++I  Y+ +G  
Sbjct: 349 RVGFDPYSFASSSLIDMYTKCG-----NIESARHVVDGCPKPDLVSLTSLIGGYAQNGKP 403

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +  + F  +LKSGTKPD +TFV VLS C+HAGLVEKG + F  ++  +     ++HY+C
Sbjct: 404 DEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTC 463

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           L D+L R+G+ ++   V+S+M P +    +  ++LG C  +G++ +A+   + L +++P 
Sbjct: 464 LVDLLARSGRFEQLKSVLSEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE 522

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +   YV  AN++AA G+W+E  ++RK+M E  + K    S  E+K K H  +A
Sbjct: 523 NPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIA 575



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 125/295 (42%), Gaps = 57/295 (19%)

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-- 231
           IV WN ++  Y   G++  A ++F+ MP+R+V +WN M++ YA  G    A  L + M  
Sbjct: 122 IVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPE 181

Query: 232 ------------FQSRFMPNET-TCTSILTSCEGMLENMLA------------------- 259
                       +  +  P E     S++        N+                     
Sbjct: 182 RDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE 241

Query: 260 -HALAIRLGFEQETSL-------TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            H   +R G + +  L         KC C            ++ AR  F+++  KDVVSW
Sbjct: 242 IHGHIVRAGLDSDEVLWSSLMDMYGKCGC------------IDEARNIFDKIIDKDVVSW 289

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           T+MI  Y       + F LF+ ++ S  +P+E TF GVL+ C+     E GR+    M+R
Sbjct: 290 TSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTR 349

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             GF P +   S L D+  + G ++ A  VV   P  + D V L +L+G    +G
Sbjct: 350 V-GFDPYSFASSSLIDMYTKCGNIESARHVVDGCP--KPDLVSLTSLIGGYAQNG 401



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 185/442 (41%), Gaps = 102/442 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQRNI------ 58
           G ++EA  LFDEM + D  S  +M+T +++     +A  L+  M   P S+ NI      
Sbjct: 167 GLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSA 226

Query: 59  -----------------------------VAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                        V  S+++D Y K G +DEAR +FD+I + +V
Sbjct: 227 VAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDV 286

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SWTS+I  YFK+ +  EG  LF  +    +  N  +++ V+  CA             T
Sbjct: 287 VSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACA-----------DLT 335

Query: 148 TMCTGLERNA-MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
           T   G + +  MT++  + +         A +++I  Y   GN+  A  + +  P+ ++ 
Sbjct: 336 TEELGRQVHGYMTRVGFDPYS-------FASSSLIDMYTKCGNIESARHVVDGCPKPDLV 388

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
           +  ++I  YA+NG    A+K  +L+ +S   P+  T  ++L++C         HA  +  
Sbjct: 389 SLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSAC--------THAGLVEK 440

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G E   S+T K    +    +   +D+ +    FE+L  K V+S   M            
Sbjct: 441 GLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQL--KSVLSEMPM------------ 486

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH---YS 383
                        KP +  +  VL  CS  G ++   +    +     FK   E+   Y 
Sbjct: 487 -------------KPSKFLWASVLGGCSTYGNIDLAEEAAQEL-----FKIEPENPVTYV 528

Query: 384 CLADILRRAGQVKEAMRVVSKM 405
            +A+I   AG+ +E  ++  +M
Sbjct: 529 TMANIYAAAGKWEEEGKMRKRM 550



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 111/278 (39%), Gaps = 66/278 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           +G  G + EA  +FD++   D VS  SMI  + ++    +  +LF  +            
Sbjct: 265 YGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTF 324

Query: 52  ------------PESQRNI-------------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
                        E  R +              A S++ID Y K G ++ AR V D   +
Sbjct: 325 SGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPK 384

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIAK- 140
            ++ S TSLI GY +  + DE  + FD   L LK     + V++  V+  C H GL+ K 
Sbjct: 385 PDLVSLTSLIGGYAQNGKPDEALKYFD---LLLKSGTKPDHVTFVNVLSACTHAGLVEKG 441

Query: 141 LEVI--------------SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYV 185
           LE                 +T +   L R+   +  +    +MP K     W +++    
Sbjct: 442 LEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCS 501

Query: 186 DAGNM----AQASELFNLMPQRNVWTWNAMIDRYARNG 219
             GN+      A ELF + P+  V T+  M + YA  G
Sbjct: 502 TYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAAG 538


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 223/443 (50%), Gaps = 26/443 (5%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAH 134
           A+ VFD     + + W  +I G+  + + +    L+ RM       N  ++ +++  C++
Sbjct: 97  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSN 156

Query: 135 ----------NGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                     +  I KL    +V +  ++          KLA   F ++P  D V+WN++
Sbjct: 157 LSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSV 216

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y  AG M  A  LF  M ++N  +W  MI  Y + G    A++L + M  S   P+ 
Sbjct: 217 IKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDN 276

Query: 241 TTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            +  + L++C   G LE     H+   +     ++ L   C    ++   G   D+  A 
Sbjct: 277 VSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLG--CVLIDMYAKCG---DMGEAL 331

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ ++ K V +WTA+I  Y+ HGHG +    F  M K G KP+ ITF  VL+ CS+ G
Sbjct: 332 EVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTG 391

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G+  F  M R Y  KP  EHY C+ D+L RAG + EA R + +MP  + + V+ GA
Sbjct: 392 LVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL-KPNAVIWGA 450

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LL ACR+H ++ + + IGE LI + P   G YV  AN+HA   +WD+ A+ R+ M E+ V
Sbjct: 451 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGV 510

Query: 477 KKVASFSQIEVKGKDHTLLAPMR 499
            KV   S I ++G  H  LA  R
Sbjct: 511 AKVPGCSTISLEGTTHEFLAGDR 533



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 29/255 (11%)

Query: 10  VKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
           ++E T++  +++    + D  +  S+I  +    +   A  LF  +P+   + V+ +++I
Sbjct: 160 LEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKP--DAVSWNSVI 217

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNV 122
            GY KAG++D A  +F ++ E N  SWT++ISGY +A    E  +LF  M    ++  N 
Sbjct: 218 KGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDN- 276

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           VS    +  CA  G    LE   W         + +TK      ++M   D V    +I 
Sbjct: 277 VSLANALSACAQLG---ALEQGKWI-------HSYLTKTR----IRM---DSVLGCVLID 319

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G+M +A E+F  + +++V  W A+I  YA +G    A+     M +    PN  T
Sbjct: 320 MYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 379

Query: 243 CTSILTSCE--GMLE 255
            T++LT+C   G++E
Sbjct: 380 FTTVLTACSYTGLVE 394


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 242/485 (49%), Gaps = 46/485 (9%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           SQ +++A + +I  Y        +R VFD +   NV+ W SLI+GY K R  +E  +LF+
Sbjct: 55  SQNSLLA-TKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFN 113

Query: 114 RM-----------------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           +M                        L     +   ++ +G   + ++A   ++S    C
Sbjct: 114 QMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVAN-SIMSMYCKC 172

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
              E       +R+ F +M  ++  +WN +I  Y  +GN+     +F+ M  RNV++W A
Sbjct: 173 GNFEE------SRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTA 226

Query: 211 MIDRYARNGPEGAAMKLL-NLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRL 266
           MI+ Y  NG    A+ L  ++       PN  +  S+L +C    G+L     H  A+R 
Sbjct: 227 MINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK 286

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGHGF 325
               E SL     C+ +   +     ++SAR  FE     KD +SW++MI  Y  HG G 
Sbjct: 287 ELNNEVSL-----CNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQ 341

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   L+ +ML++G +PD IT VG+LS CS +GLV +G   ++ +   YG +P  E ++C+
Sbjct: 342 EAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACI 401

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAGQ+  A+  +  MP  E    V GAL+    +HGD+ M +     LI+L+P +
Sbjct: 402 VDMLGRAGQLDPALDFIKAMPV-EPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPEN 460

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH---TLLAPMREM 501
              YV  +N++A+   WD  A+VR+ M ++R++KV   S I +  K H   TL   +R++
Sbjct: 461 PSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYTLKYSLRQV 520

Query: 502 GYVVL 506
             ++L
Sbjct: 521 CLILL 525



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 27/217 (12%)

Query: 7   TGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIV 59
            G   EA  LF +M      +P+ VS  S++        L     +  F    E    + 
Sbjct: 234 NGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVS 293

Query: 60  AESAMIDGYVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
             +A+ID Y K G +D AR+VF D+    +  SW+S+ISGY    +  E   L+D+M   
Sbjct: 294 LCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQA 353

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               ++++   ++  C+ +GL+ +           GL  N  + +  +Y ++ P  +I A
Sbjct: 354 GIRPDMITTVGILSACSRSGLVNE-----------GL--NIYSSVINDYGIE-PTLEIFA 399

Query: 177 WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
              ++     AG +  A +    MP +     W A++
Sbjct: 400 --CIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALV 434


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/500 (29%), Positives = 258/500 (51%), Gaps = 35/500 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +K+A  L    S P   +C  +I    R + L  A  + + + +    ++    + +I
Sbjct: 52  GNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLI 111

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVV 123
           + + +   VD ARKVFD+  +  +Y W +L      A + ++   L+ RM +     +  
Sbjct: 112 NMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRF 171

Query: 124 SWTTVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           ++T ++  C A   L++ L+         G E +A   + R  +       +     ++ 
Sbjct: 172 TYTYLLKACVASECLVSFLQ--------KGKEIHA--HILRHGY----GAHVHVMTTLMD 217

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNE 240
            Y   G ++ AS +F+ MP +NV +W+AMI  YA+NG    A++L   M  +    +PN 
Sbjct: 218 MYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 241 TTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  S+L +C     + +  L HA  +R G +    +       Y          + S +
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCG-----KLESGQ 332

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
           L F+R+  KDVV W ++I +Y  HG+G +  ++F  M+  G  P  I+F+ VL  CSH G
Sbjct: 333 LIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTG 392

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS--KMPPHERDHVVL 415
           LVE+G+K F  M + +G +P  EHY+C+ D+L RA ++ EA +++   ++ P  +   V 
Sbjct: 393 LVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPK---VW 449

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-R 474
           G+LLGACR+H  V +A+   +RL +L+P+++G YVL A+++A    WDE  +V+K ++ R
Sbjct: 450 GSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSR 509

Query: 475 RVKKVASFSQIEVKGKDHTL 494
            ++KV   S IEV+ K ++ 
Sbjct: 510 ELQKVPGRSWIEVRRKIYSF 529



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIR 265
           N +I    + G    A+ LL+        P + TC  ++ S      + + +  H L + 
Sbjct: 42  NHLIQSLCKQGNLKQALYLLS----HESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            GF+Q+  L  K    +   D      V++AR  F++   + +  W A+  A +  G G 
Sbjct: 98  GGFDQDPFLATKLINMFSELD-----TVDNARKVFDKTRKRTIYVWNALFRALALAGRGN 152

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHA----GLVEKGRKTFNLMSRAYGFKPRAEH 381
            V  L+ RM   G   D  T+  +L  C  +      ++KG++    + R +G+      
Sbjct: 153 DVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILR-HGYGAHVHV 211

Query: 382 YSCLADILRRAGQVKEAMRVVSKMP 406
            + L D+  R G V  A  V  +MP
Sbjct: 212 MTTLMDMYARFGCVSYASAVFDEMP 236



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 44/178 (24%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           ++FGC   V  A+ +FDEM   + VS ++MI  + +N    +A  LFR M  +  + V  
Sbjct: 220 ARFGC---VSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPN 276

Query: 62  ---------------------------------------SAMIDGYVKAGRVDEARKVFD 82
                                                  SA+I  Y + G+++  + +FD
Sbjct: 277 SVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFD 336

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
            +++ +V  W SLIS Y       +  ++F+ M       + +S+ +V+  C+H GL+
Sbjct: 337 RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLV 394


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/576 (28%), Positives = 279/576 (48%), Gaps = 114/576 (19%)

Query: 8   GKVKEATKLFDEMSQ---PDPVSCASMITVFLRN-----------------HDLPKAE-- 45
           G ++EA+ +FDE++Q    D +S  S+++  +++                 H+ P  E  
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 225

Query: 46  ------------ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVF 81
                          +A+P+++             ++   +A+ID Y K G ++ A KVF
Sbjct: 226 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 285

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLG----- 131
           + +   +V SW ++++GY ++        LF  M     PL   ++V+WT V+ G     
Sbjct: 286 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPL---DMVTWTAVIAGYSQRG 342

Query: 132 CAHNGLIA------------KLEVISWTTMCT-------GLE------RNAMTKLAREYF 166
           C+H  L               + +IS  + C        G+E      +N +  L  ++ 
Sbjct: 343 CSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG 402

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAA 224
            +  ++D++ +NA+I  Y    +   A  +F+ +P  +RNV TW  MI  +A+ G    A
Sbjct: 403 GE--DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 460

Query: 225 MKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLG----------FEQET 272
           +KL   M    +   PN  T + IL +C        AH  AIR+G           + ++
Sbjct: 461 LKLFVEMISEPYGVAPNAYTISCILMAC--------AHLAAIRIGKQIHAYVLRHHQYDS 512

Query: 273 SLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
           S  +   C   ++   G   DV++AR  F+ +  K  +SWT+M+  Y  HG G +   +F
Sbjct: 513 SAYFVANCLINMYSKCG---DVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIF 569

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            +M K+G  PD+ITF+ VL  CSH G+V++G   F+ MS  YG  PRAEHY+   D+L R
Sbjct: 570 DKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLAR 629

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
            G++ +A + V  M P E   VV  ALL ACR+H +V +A++   +L+E+   + G+Y L
Sbjct: 630 FGRLDKAWKTVKDM-PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 688

Query: 452 SANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
            +N++A  G W + A++R  M++  +KK    S ++
Sbjct: 689 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 724



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 172/397 (43%), Gaps = 50/397 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRL 111
           + N+   +A++  Y + G ++EA  +FDEI +    +V SW S++S + K+        L
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 208

Query: 112 FDRMPLKL--------KNVVSWTTVVLGCA-----------HNGLIAK---LEVISWTTM 149
           F +M L +         +++S   ++  C            H   I     L+V     +
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 268

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV---- 205
                +  + + A + F  M  KD+V+WNAM+  Y  +GN   A ELF  M + N+    
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHAL 262
            TW A+I  Y++ G    A+ +   M  S  +PN  T  S+L++C  +    + M  HA 
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 388

Query: 263 AIR---------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSW 311
           +++          G E E  + Y            F+    +AR  F+   LE ++VV+W
Sbjct: 389 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK----AARSIFDDIPLEERNVVTW 444

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           T MI  ++ +G      +LF  M+    G  P+  T   +L  C+H   +  G++    +
Sbjct: 445 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 504

Query: 370 SRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            R + +   A   + CL ++  + G V  A  V   M
Sbjct: 505 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 541



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A L  ER+     V W  +I  +   G       +  RML++GT+ D  T   VL  C  
Sbjct: 70  ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGE 129

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
                 G   F+ +    GF+      + L  +  R G ++EA  +  ++     D V+
Sbjct: 130 LPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 35/448 (7%)

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           GNV   T+L   Y K  ++ +   +F  M    +NVVSWT ++ GC  NG I  L V+ +
Sbjct: 337 GNVM--TALADAYSKCGELADALNIFS-MTTGSRNVVSWTAIISGCIQNGDI-PLAVVLF 392

Query: 147 T------TMCTGLERNAMTKLAREYFVQMPNKDIVAWN---------AMITAYVDAGNMA 191
           +       M      +AM K +        +  ++  N         A++ +Y   G+  
Sbjct: 393 SRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTE 452

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A  +F ++ Q++V  W+AM+  +A+ G    A  L N M      PNE T +S++ +C 
Sbjct: 453 DALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512

Query: 252 ----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
               G+ +    HA++I+  +         C    +   +  + +++SA++ FER   +D
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAI-----CVSSALVSMYSRKGNIDSAQIVFERQTDRD 567

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +VSW +MI  Y+ HG+  +    F +M  SG + D +TF+ V+  C+H GLV +G++ F+
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            M R +   P  EHY+C+ D+  RAG++ E M ++  M P     +V   LLGACR+H +
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM-PFPAGAMVWRTLLGACRVHKN 686

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
           V +  +  ++L+ L+P  S  YVL +N++AA G+W E  +VRK M+ R+VKK A  S I+
Sbjct: 687 VELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQ 746

Query: 487 VKGKDHTLLA-----PMREMGYVVLKEV 509
           +K K H+ +A     PM +  Y  LK +
Sbjct: 747 IKNKVHSFIAFDKSHPMSDQIYKKLKVI 774



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 168/372 (45%), Gaps = 36/372 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF--DRMPLKL 119
           +++++ Y K G V++A+ VF+ +   ++ SW +L++G        E  +LF   R  +  
Sbjct: 240 NSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGK 299

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG--LERNAMTKLAREYFVQMPNKDIVAW 177
               ++ TV+  CA+   +A    +    +  G  L  N MT LA               
Sbjct: 300 MTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALA--------------- 344

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
                AY   G +A A  +F++    RNV +W A+I    +NG    A+ L + M + R 
Sbjct: 345 ----DAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRV 400

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           MPNE T +++L +   +L   + HA  I+  ++   S+       Y    +G   D  S 
Sbjct: 401 MPNEFTYSAMLKASLSILPPQI-HAQVIKTNYQHIPSVGTALLASYS--KFGSTEDALS- 456

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS-- 354
              F+ +E KDVV+W+AM+  ++  G       LF +M   G KP+E T   V+  C+  
Sbjct: 457 --IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACP 514

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
            AG V++GR+ F+ +S  Y +       S L  +  R G +  A  V  +    +RD V 
Sbjct: 515 SAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT--DRDLVS 570

Query: 415 LGALLGACRLHG 426
             +++     HG
Sbjct: 571 WNSMISGYAQHG 582



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 38/324 (11%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIY---------EGNVYSWTSLISGYFKARQVDEG 108
           ++ +SA +   +KA R    R + ++++          G V + TSL+  Y K   V EG
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEG 154

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------- 159
             +F+ MP   KNVV+WT+++ GCAH  + +++  + +     G+  N  T         
Sbjct: 155 IEVFEGMP--KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVA 212

Query: 160 -----KLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                 L +    Q         +   N+++  Y   G +  A  +FN M  R++ +WN 
Sbjct: 213 SQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNT 272

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG 267
           ++     N  E  A++L +    +     ++T  +++  C  + +  LA   H+  ++ G
Sbjct: 273 LMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332

Query: 268 FEQETS-LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           F    + +T     +    +    L++ S         +++VVSWTA+I     +G    
Sbjct: 333 FHLTGNVMTALADAYSKCGELADALNIFSMTTG-----SRNVVSWTAIISGCIQNGDIPL 387

Query: 327 VFRLFARMLKSGTKPDEITFVGVL 350
              LF+RM +    P+E T+  +L
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAML 411



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 122/271 (45%), Gaps = 10/271 (3%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           ++ A  +++  Y+  G++ +  E+F  MP++NV TW +++   A        M L   M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                PN  T  S+L++   +G L+     HA +++ G      +     C+ +   +  
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV-----CNSLMNMYAK 248

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  A+  F  +E +D+VSW  ++     +    +  +LF     +  K  + T+  V
Sbjct: 249 CGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  C++   +   R+  + + + +GF       + LAD   + G++ +A+ + S M    
Sbjct: 309 IKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFS-MTTGS 366

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           R+ V   A++  C  +GD+ +A  +  R+ E
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 117/279 (41%), Gaps = 52/279 (18%)

Query: 8   GKVKEATKLFDEMSQP-DPVSCASMITVFLRNHDLPKAEALF------RAMPES------ 54
           G++ +A  +F   +   + VS  ++I+  ++N D+P A  LF      R MP        
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 55  ---------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                                Q      +A++  Y K G  ++A  +F  I + +V +W+
Sbjct: 411 LKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWS 470

Query: 94  SLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           +++S + +A   +    LF++M ++    N  + ++V+  CA               +  
Sbjct: 471 AMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA----------CPSAGVDQ 520

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G + +A++   R +        I   +A+++ Y   GN+  A  +F     R++ +WN+M
Sbjct: 521 GRQFHAISIKYRYH------DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSM 574

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           I  YA++G    A++    M  S    +  T  +++  C
Sbjct: 575 ISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGC 613



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 32/238 (13%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---NIVA 60
           G  + AT LF++M+    +P+  + +S+I               F A+    R    I  
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK---ARQVDEGRRLFDRMPL 117
            SA++  Y + G +D A+ VF+   + ++ SW S+ISGY +   + +  E  R  +   +
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++   V++  V++GC HNGL+ +              +     + R++ +   N  +  +
Sbjct: 600 QMDG-VTFLAVIMGCTHNGLVVE-------------GQQYFDSMVRDHKI---NPTMEHY 642

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARNGPEG--AAMKLLNL 230
             M+  Y  AG + +   L   MP       W  ++   R  +N   G  +A KLL+L
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSL 700



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 200 MPQRNVWTW-NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           +P+R+     N ++  YAR G     +   ++  +   + +  T + +L +C  + + +L
Sbjct: 58  IPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVL 117

Query: 259 A---HALAIRLGFEQ-ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
               H L ++ G ++ E S        Y+         V      FE +  K+VV+WT++
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG-----SVCEGIEVFEGMPKKNVVTWTSL 172

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           +   ++     +V  LF RM   G  P+  TF  VLS  +  G ++ G++   + +++  
Sbjct: 173 LTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR---VHAQSVK 229

Query: 375 FKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  R+  + C  L ++  + G V++A  V + M    RD V    L+   +L+
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM--ETRDMVSWNTLMAGLQLN 280


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 230/461 (49%), Gaps = 40/461 (8%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLG 131
           +  A K+F  +     + W ++I  + +  +      L+  M     L N  +++ V+  
Sbjct: 60  ISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRA 119

Query: 132 CAHN---GLIAKLEVISWTTMCTGLERNAMTKL---------AREYFVQMPNKDIVAWNA 179
           C  N   GL +  +VI           N +  L         AR+ F     +D++ W A
Sbjct: 120 CTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTA 179

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  YV +G++  A ELF+ MP+RN  +W+AMI  Y   G    A++L N +  +   PN
Sbjct: 180 LINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPN 239

Query: 240 ETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGF 289
                  LT+C   G L++    HA   R G E +         +  KC C         
Sbjct: 240 HAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGC--------- 290

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   FE++  KD  ++T++I   +NHG      +LF RM      P+E+TF+ V
Sbjct: 291 ---IEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICV 347

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CS  GLV++G + FN MS  YG +P  +HY C+ D+L RAG ++EA R+V +M P E
Sbjct: 348 LSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREM-PME 406

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D  VLGALL +CR+HGDV +     E L+E      G +VL +N++A+  +WD   +VR
Sbjct: 407 PDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVR 466

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           K+M  ++VKKV   S IE+ G     +A   +M Y+ +++V
Sbjct: 467 KEMGAKKVKKVPGCSSIEIDGSVSEFIAG--DMSYLRVEDV 505



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 24/212 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +I  Y     V+ ARK+FD     +V +WT+LI+GY K+  V+  R LFD+MP   +N
Sbjct: 147 NGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMP--ERN 204

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN------AMTKLAREYFVQMPNK--- 172
            VSW+ ++ G  H G+  +   +      TGL  N      A+T  A  Y   + +    
Sbjct: 205 EVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALT--ACSYLGSLDHGRWI 262

Query: 173 -----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                      D V   A++  Y   G +  A  +F  MP ++ + + ++I   A +G  
Sbjct: 263 HAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQS 322

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             A++L   M   + +PNE T   +L++C  M
Sbjct: 323 ADAIQLFGRMQSEKVIPNEVTFICVLSACSRM 354



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 32/298 (10%)

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGN--MAQASELFNLMPQRNVWTWNAMIDRY 215
           + ++     V     D  A   +I+ +  + N  ++ A +LF  +P R  + WN +I  +
Sbjct: 26  IKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIF 85

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-EGMLENMLAHALAIRLGFEQETSL 274
                   A+ L   M Q+ F+PN  T + +L +C +     + +HA  I+LG+E    +
Sbjct: 86  VEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFV 145

Query: 275 TYKCTCHYVFWD-------------------WGFQLD-------VNSARLAFERLEAKDV 308
                  Y  W                    W   ++       V  AR  F+++  ++ 
Sbjct: 146 LNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNE 205

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSW+AMI  Y + G   +   LF  +  +G +P+    VG L+ CS+ G ++ GR     
Sbjct: 206 VSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAY 265

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + R  G +      + L D+  + G ++ A  V  KMP  ++D     +L+     HG
Sbjct: 266 VDRN-GTELDRVLGTALVDMYAKCGCIEIACSVFEKMP--DKDAFAFTSLISGLANHG 320


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 250/495 (50%), Gaps = 36/495 (7%)

Query: 22  QPD--PVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           +PD   V+C+   +     N  L K    F      + +I   +A+I  Y +   +  AR
Sbjct: 104 KPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLAR 163

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHN 135
            +FD + E +  SW ++++GY +    +E + LF  M   ++   N ++  +V+  CA +
Sbjct: 164 IMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQS 223

Query: 136 GLIA--------------KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             +               K++V  W  +     +  +   ARE F +MP KD + + +MI
Sbjct: 224 NDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMI 283

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y+  G + QA +LF    +  + TWNA+I    +N  +  A+ +   M      PN  
Sbjct: 284 SGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTV 343

Query: 242 TCTSIL------TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           T  SIL      ++ +G  E    H  AIR  +++   +       Y    +     ++ 
Sbjct: 344 TLASILPVFSHFSTLKGGKE---IHGYAIRNTYDRNIYVATAIIDSYAKCGY-----LHG 395

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+L F++++ + +++WT++I AY+ HG       LF  ML +G +PD++TF  VL+ C+H
Sbjct: 396 AQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAH 455

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           +G +++  K FN++   YG +P  EHY+C+  +L RAG++ +A+  +SKMP  E    V 
Sbjct: 456 SGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPL-EPTAKVW 514

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           GALL    + GDV +  Y+ +RL E++P ++G YV+ AN+++  G W +   +R  M E 
Sbjct: 515 GALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEV 574

Query: 475 RVKKVASFSQIEVKG 489
           R+KK+   S IE  G
Sbjct: 575 RLKKIPGNSWIETSG 589



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 174/457 (38%), Gaps = 91/457 (19%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I  Y K+G + +A  VF +I   N++SW +L   Y       +  +LF  +      
Sbjct: 42  SKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNST 101

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR---EYFVQMPNKDIVAWN 178
            V      + C+       L+ ++     +GL +   + + R   EY       DI   N
Sbjct: 102 DVKPDRFTVTCS-------LKALASLFSNSGLAKEVHSFILRRGLEY-------DIFVVN 147

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFM 237
           A+IT Y     +  A  +F+ MP+R+  +WNAM+  Y++ G      +L  +M  S    
Sbjct: 148 ALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVK 207

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV---- 293
           PN  T  S+L +C                   Q   LT+    H    +   ++DV    
Sbjct: 208 PNALTAVSVLQAC------------------AQSNDLTFGIEVHRFVNESQIKMDVSLWN 249

Query: 294 ------------NSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVFR--------- 329
                       + AR  FE +  KD +++ +MI  Y  HG       +FR         
Sbjct: 250 AVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPT 309

Query: 330 -------------------LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
                              +F  M   G +P+ +T   +L   SH   ++ G++      
Sbjct: 310 WNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAI 369

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           R   +       + + D   + G +  A  V  ++    R  +   +++ A  +HGD  +
Sbjct: 370 RN-TYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKG--RSLIAWTSIISAYAVHGDANV 426

Query: 431 ADYIGERLIE--LQPSS-SGAYVLSANVHAARGEWDE 464
           A  +   ++   +QP   +   VL+A  H+  GE DE
Sbjct: 427 ALSLFYEMLTNGIQPDQVTFTSVLAACAHS--GELDE 461



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 68/299 (22%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------------ 54
           A  +FD M + D VS  +M+  + +     + + LFR M  S                  
Sbjct: 162 ARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACA 221

Query: 55  QRN----------IVAES----------AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
           Q N           V ES          A+I  Y K G +D AR++F+E+ E +  ++ S
Sbjct: 222 QSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCS 281

Query: 95  LISGYFKARQVDEGRRLF-----DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           +ISGY     V++   LF      R+P       +W  V+ G   N        I     
Sbjct: 282 MISGYMVHGFVNQAMDLFREQERPRLP-------TWNAVISGLVQNNRQEGAVDIFRAMQ 334

Query: 150 CTGLERNAMT-----------------KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
             G   N +T                 K    Y ++   +++I    A+I +Y   G + 
Sbjct: 335 SHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A  +F+ +  R++  W ++I  YA +G    A+ L   M  +   P++ T TS+L +C
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAAC 453



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 64/249 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LF+EM + D ++  SMI+ ++ +  + +A  LFR   + +  +   +A+I G
Sbjct: 259 GILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFR--EQERPRLPTWNAVISG 316

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
            V+  R + A  +F  +                                       Y+ N
Sbjct: 317 LVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRN 376

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +Y  T++I  Y K   +   + +FD+  +K +++++WT+++   A +G            
Sbjct: 377 IYVATAIIDSYAKCGYLHGAQLVFDQ--IKGRSLIAWTSIISAYAVHG------------ 422

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWT 207
                + N    L  E        D V + +++ A   +G + +A ++FN L+P+  +  
Sbjct: 423 -----DANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGI-- 475

Query: 208 WNAMIDRYA 216
              +++ YA
Sbjct: 476 -QPLVEHYA 483


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 35/448 (7%)

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           GNV   T+L   Y K  ++ +   +F  M    +NVVSWT ++ GC  NG I  L V+ +
Sbjct: 337 GNVM--TALADAYSKCGELADALNIFS-MTTGSRNVVSWTAIISGCIQNGDI-PLAVVLF 392

Query: 147 T------TMCTGLERNAMTKLAREYFVQMPNKDIVAWN---------AMITAYVDAGNMA 191
           +       M      +AM K +        +  ++  N         A++ +Y   G+  
Sbjct: 393 SRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTE 452

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A  +F ++ Q++V  W+AM+  +A+ G    A  L N M      PNE T +S++ +C 
Sbjct: 453 DALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512

Query: 252 ----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
               G+ +    HA++I+  +         C    +   +  + +++SA++ FER   +D
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAI-----CVSSALVSMYSRKGNIDSAQIVFERQTDRD 567

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +VSW +MI  Y+ HG+  +    F +M  SG + D +TF+ V+  C+H GLV +G++ F+
Sbjct: 568 LVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFD 627

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            M R +   P  EHY+C+ D+  RAG++ E M ++  M P     +V   LLGACR+H +
Sbjct: 628 SMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDM-PFPAGAMVWRTLLGACRVHKN 686

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
           V +  +  ++L+ L+P  S  YVL +N++AA G+W E  +VRK M+ R+VKK A  S I+
Sbjct: 687 VELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQ 746

Query: 487 VKGKDHTLLA-----PMREMGYVVLKEV 509
           +K K H+ +A     PM +  Y  LK +
Sbjct: 747 IKNKVHSFIAFDKSHPMSDQIYKKLKVI 774



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 184/416 (44%), Gaps = 44/416 (10%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-----NIVAESAMIDGYVKAGRVDEA 77
           P+P + AS+++       L   +   R   +S +     ++   +++++ Y K G V++A
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQ---RVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDA 255

Query: 78  RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF--DRMPLKLKNVVSWTTVVLGCAHN 135
           + VF+ +   ++ SW +L++G        E  +LF   R  +      ++ TV+  CA+ 
Sbjct: 256 KSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANL 315

Query: 136 GLIAKLEVISWTTMCTG--LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             +A    +    +  G  L  N MT LA                    AY   G +A A
Sbjct: 316 KQLALARQLHSCVLKHGFHLTGNVMTALA-------------------DAYSKCGELADA 356

Query: 194 SELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
             +F++    RNV +W A+I    +NG    A+ L + M + R MPNE T +++L +   
Sbjct: 357 LNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS 416

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
           +L   + HA  I+  ++    +       Y    +G   D  S    F+ +E KDVV+W+
Sbjct: 417 ILPPQI-HAQVIKTNYQHIPFVGTALLASYS--KFGSTEDALS---IFKMIEQKDVVAWS 470

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS--HAGLVEKGRKTFNLMS 370
           AM+  ++  G       LF +M   G KP+E T   V+  C+   AG V++GR+ F+ +S
Sbjct: 471 AMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAIS 528

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             Y +       S L  +  R G +  A  V  +    +RD V   +++     HG
Sbjct: 529 IKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT--DRDLVSWNSMISGYAQHG 582



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 38/324 (11%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIY---------EGNVYSWTSLISGYFKARQVDEG 108
           ++ +SA +   +KA R    R + ++++          G V + TSL+  Y K   V EG
Sbjct: 95  VLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEG 154

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------- 159
             +F+ MP   KNVV+WT+++ GCAH  + +++  + +     G+  N  T         
Sbjct: 155 IEVFEGMP--KKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVA 212

Query: 160 -----KLAREYFVQMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                 L +    Q         +   N+++  Y   G +  A  +FN M  R++ +WN 
Sbjct: 213 SQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNT 272

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG 267
           ++     N  E  A++L +    +     ++T  +++  C  + +  LA   H+  ++ G
Sbjct: 273 LMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332

Query: 268 FEQETS-LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           F    + +T     +    +    L++ S         +++VVSWTA+I     +G    
Sbjct: 333 FHLTGNVMTALADAYSKCGELADALNIFSMTTG-----SRNVVSWTAIISGCIQNGDIPL 387

Query: 327 VFRLFARMLKSGTKPDEITFVGVL 350
              LF+RM +    P+E T+  +L
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAML 411



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 122/271 (45%), Gaps = 10/271 (3%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           ++ A  +++  Y+  G++ +  E+F  MP++NV TW +++   A        M L   M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                PN  T  S+L++   +G L+     HA +++ G      +     C+ +   +  
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFV-----CNSLMNMYAK 248

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V  A+  F  +E +D+VSW  ++     +    +  +LF     +  K  + T+  V
Sbjct: 249 CGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +  C++   +   R+  + + + +GF       + LAD   + G++ +A+ + S M    
Sbjct: 309 IKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFS-MTTGS 366

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           R+ V   A++  C  +GD+ +A  +  R+ E
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 117/279 (41%), Gaps = 52/279 (18%)

Query: 8   GKVKEATKLFDEMSQP-DPVSCASMITVFLRNHDLPKAEALF------RAMPES------ 54
           G++ +A  +F   +   + VS  ++I+  ++N D+P A  LF      R MP        
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 55  ---------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                                Q      +A++  Y K G  ++A  +F  I + +V +W+
Sbjct: 411 LKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWS 470

Query: 94  SLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           +++S + +A   +    LF++M ++    N  + ++V+  CA               +  
Sbjct: 471 AMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA----------CPSAGVDQ 520

Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           G + +A++   R +        I   +A+++ Y   GN+  A  +F     R++ +WN+M
Sbjct: 521 GRQFHAISIKYRYH------DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSM 574

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           I  YA++G    A++    M  S    +  T  +++  C
Sbjct: 575 ISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGC 613



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 32/238 (13%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---NIVA 60
           G  + AT LF++M+    +P+  + +S+I               F A+    R    I  
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK---ARQVDEGRRLFDRMPL 117
            SA++  Y + G +D A+ VF+   + ++ SW S+ISGY +   + +  E  R  +   +
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           ++   V++  V++GC HNGL+ +              +     + R++ +   N  +  +
Sbjct: 600 QMDG-VTFLAVIMGCTHNGLVVE-------------GQQYFDSMVRDHKI---NPTMEHY 642

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID--RYARNGPEG--AAMKLLNL 230
             M+  Y  AG + +   L   MP       W  ++   R  +N   G  +A KLL+L
Sbjct: 643 ACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSL 700



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 200 MPQRNVWTW-NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
           +P+R+     N ++  YAR G     +   ++  +   + +  T + +L +C  + + +L
Sbjct: 58  IPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVL 117

Query: 259 A---HALAIRLGFEQ-ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
               H L ++ G ++ E S        Y+         V      FE +  K+VV+WT++
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCG-----SVCEGIEVFEGMPKKNVVTWTSL 172

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           +   ++     +V  LF RM   G  P+  TF  VLS  +  G ++ G++   + +++  
Sbjct: 173 LTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR---VHAQSVK 229

Query: 375 FKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  R+  + C  L ++  + G V++A  V + M    RD V    L+   +L+
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM--ETRDMVSWNTLMAGLQLN 280


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/541 (28%), Positives = 268/541 (49%), Gaps = 76/541 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------ 54
            G +++A+ +FDE+++PD VS  ++I   + +    +A  L R M +S            
Sbjct: 159 VGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSA 218

Query: 55  ---------------------QRNIVAES----AMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                + ++ ++S     +ID Y K   +D+AR VF  + E ++
Sbjct: 219 LKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDM 278

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            +W ++ISG+ +  + +E   LF   PL     + +    L    + ++  +  +    M
Sbjct: 279 IAWNAVISGHSQNEEDEEAASLF---PLMHTEGIGFNQTTL----STVLKSIAALQANYM 331

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           C  +   ++ K   E+       D    N++I  Y   G++  A+ +F   P  ++  + 
Sbjct: 332 CRQIHALSL-KSGFEF-------DNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFT 383

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRL 266
           +++  YA++G    A++L   M      P+   C+S+L +C  +    +    H   ++ 
Sbjct: 384 SLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKF 443

Query: 267 GFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           GF  +        ++  KC              +  A  AF R+  + +VSW+AMI   +
Sbjct: 444 GFMSDIFAGNSLVNMYAKCG------------SIEDASCAFSRIPVRGIVSWSAMIGGLA 491

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HG+G +  +LF +MLK G  P+ IT V VL  C+HAGLV + +  FN M   +G +P  
Sbjct: 492 QHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQ 551

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           EHY+C+ D+L RAG+++ AM +V+KM P + + +V GALLGA R+H ++ + +   E L+
Sbjct: 552 EHYACMIDLLGRAGKLEAAMELVNKM-PFQANALVWGALLGAARIHKNIDLGEQAAEMLL 610

Query: 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPM 498
            L+P  SG +VL AN++A+ G WD+ A+VR+ M + +VKK    S +EVK K +T +   
Sbjct: 611 ALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGD 670

Query: 499 R 499
           R
Sbjct: 671 R 671



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 26/343 (7%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G   +AR +FD I + +V SW +L S Y  +    E   LF  M            
Sbjct: 55  YAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDM------------ 102

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVD 186
           V+ G   N    +  + S   +CTGLE +   +    Y +++  + D  + NA++  Y  
Sbjct: 103 VLSGIRPN----EFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAK 158

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G +  AS +F+ + + ++ +WNA+I     +     A++LL  M +S   PN  T +S 
Sbjct: 159 VGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSA 218

Query: 247 LTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           L +C GM    L    H+  I++    ++ L       Y   +      ++ ARL F+ +
Sbjct: 219 LKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN-----SMDDARLVFKLM 273

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             +D+++W A+I  +S +    +   LF  M   G   ++ T   VL   + A       
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA-ALQANYMC 332

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +  + +S   GF+      + L D   + G V++A RV  + P
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP 375



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 15/254 (5%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D    N+++  Y   G    A  LF+ +P R+V +WNA+   Y  +   G A+ L + 
Sbjct: 42  DSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD 101

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M  S   PNE + +S++  C G+ +++     H   I+LG++ +          Y     
Sbjct: 102 MVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYA--KV 159

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G   D +S    F+ +   D+VSW A+I     H +  +   L   M KSG  P+  T  
Sbjct: 160 GILEDASS---VFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLS 216

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKM 405
             L  C+   L E GR+   L S        ++ +    L D+  +   + +A  V   M
Sbjct: 217 SALKACAGMALRELGRQ---LHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 406 PPHERDHVVLGALL 419
           P  ERD +   A++
Sbjct: 274 P--ERDMIAWNAVI 285



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 51/253 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE-- 61
           +G  G V++AT++F+E    D V   S++T + ++    +A  L+  M +  R I  +  
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQD--RGIKPDSF 415

Query: 62  --SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S++++        ++ ++V   I    +  ++++  SL++ Y K   +++    F R+
Sbjct: 416 VCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRI 475

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------ 169
           P++                 G++      SW+ M  GL ++   K A + F QM      
Sbjct: 476 PVR-----------------GIV------SWSAMIGGLAQHGYGKEALQLFKQMLKVGVP 512

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNGPEG 222
           PN   +   +++ A   AG +A+A   FN M       P +    +  MID   R G   
Sbjct: 513 PNH--ITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQE--HYACMIDLLGRAGKLE 568

Query: 223 AAMKLLNLM-FQS 234
           AAM+L+N M FQ+
Sbjct: 569 AAMELVNKMPFQA 581


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/575 (28%), Positives = 278/575 (48%), Gaps = 112/575 (19%)

Query: 8   GKVKEATKLFDEMSQ---PDPVSCASMITVFLRN-----------------HDLPKAE-- 45
           G ++EA+ +FDE++Q    D +S  S+++  +++                 H+ P  E  
Sbjct: 59  GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 118

Query: 46  ------------ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVF 81
                          +A+P+++             ++   +A+ID Y K G ++ A KVF
Sbjct: 119 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLG----- 131
           + +   +V SW ++++GY ++        LF  M     PL   ++V+WT V+ G     
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPL---DMVTWTAVIAGYSQRG 235

Query: 132 CAHNGLIA------------KLEVISWTTMCT-------GLE------RNAMTKLAREYF 166
           C+H  L               + +IS  + C        G+E      +N +  L  ++ 
Sbjct: 236 CSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG 295

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAA 224
            +  ++D++ +NA+I  Y    +   A  +F+ +P  +RNV TW  MI  +A+ G    A
Sbjct: 296 GE--DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 353

Query: 225 MKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLG----------FEQET 272
           +KL   M    +   PN  T + IL +C        AH  AIR+G           + ++
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMAC--------AHLAAIRIGKQIHAYVLRHHQYDS 405

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
           S  +   C  +   +    DV++AR  F+ +  K  +SWT+M+  Y  HG G +   +F 
Sbjct: 406 SAYFVANC--LINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 463

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           +M K+G  PD+ITF+ VL  CSH G+V++G   F+ MS  YG  PRAEHY+   D+L R 
Sbjct: 464 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARF 523

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++ +A + V  M P E   VV  ALL ACR+H +V +A++   +L+E+   + G+Y L 
Sbjct: 524 GRLDKAWKTVKDM-PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLI 582

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           +N++A  G W + A++R  M++  +KK    S ++
Sbjct: 583 SNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 617



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 172/397 (43%), Gaps = 50/397 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRL 111
           + N+   +A++  Y + G ++EA  +FDEI +    +V SW S++S + K+        L
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101

Query: 112 FDRMPLKL--------KNVVSWTTVVLGCA-----------HNGLIAK---LEVISWTTM 149
           F +M L +         +++S   ++  C            H   I     L+V     +
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV---- 205
                +  + + A + F  M  KD+V+WNAM+  Y  +GN   A ELF  M + N+    
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHAL 262
            TW A+I  Y++ G    A+ +   M  S  +PN  T  S+L++C  +    + M  HA 
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281

Query: 263 AIR---------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER--LEAKDVVSW 311
           +++          G E E  + Y            F+    +AR  F+   LE ++VV+W
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK----AARSIFDDIPLEERNVVTW 337

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           T MI  ++ +G      +LF  M+    G  P+  T   +L  C+H   +  G++    +
Sbjct: 338 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 397

Query: 370 SRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKM 405
            R + +   A   + CL ++  + G V  A  V   M
Sbjct: 398 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 434


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/570 (29%), Positives = 266/570 (46%), Gaps = 75/570 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--------- 52
           S +   G  ++A   FDEM   + VS  ++I+ F R  +L +A  LF +M          
Sbjct: 62  SGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWNV 121

Query: 53  --------------------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                  RN+V  + MI GY +AG +D A ++F  + + N   W
Sbjct: 122 LIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCW 181

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK----------LE 142
            +LISG  + R++ +   LF  +P +  ++VSW  ++ GC H+G + +           +
Sbjct: 182 NALISGMGRNRRLPDALELFQALPFR--DMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTD 239

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           V+ WT + T    +   + AR+ F  +P KD  A NAMI AY   G +A+A +LF+    
Sbjct: 240 VVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGD 299

Query: 203 -RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENML 258
            R+V +WNA++  +++NG    A+ +   M      P+  +  S L +C     + E  L
Sbjct: 300 LRDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKL 359

Query: 259 AHA---LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
            H    LA +     E SL    T    F+    +LD   AR  F+ +   D +   +M+
Sbjct: 360 LHEELLLASQGEIFVEASLA---TALVNFYAKCGRLD--EARSLFDAMAFCDAILLNSML 414

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            AY+  G   +   LF R + SG  PD +TFV ++S CSHAGL++ G + F  +   +  
Sbjct: 415 GAYAQSGRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVGDFAL 474

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            P A HY+C+ D+L R G + +   ++  M P + ++    +LL  CR HGDV     + 
Sbjct: 475 APHAAHYTCMVDLLARTGHLMDGEDLLDAM-PFQPEYTAWKSLLAGCRTHGDVGRGARLA 533

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKD--- 491
            R     P  S  YVL + ++ A G+  +   VRK M+ RR++K A  S I +KG+    
Sbjct: 534 RRATNANPVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLSSITIKGRAHEF 593

Query: 492 -----------------HTLLAPMREMGYV 504
                            H+L A MRE GYV
Sbjct: 594 VAGGKNHPEISAILDELHSLNAKMREAGYV 623



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 198/447 (44%), Gaps = 61/447 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G V +A   FD +  P   S   M+  + +N  L  A   F   P   +++V+ + 
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTP--NKDVVSWNG 59

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GY + G   +A+  FDE+   N  S+ +LIS + +   + E R LF+ M  K+++  
Sbjct: 60  MLSGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSM--KIRDAA 117

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           +W  ++ G              +T  C       +   ARE F + P +++V WN MI  
Sbjct: 118 TWNVLIAG--------------YTQRC-------LCTHAREIFDRAPVRNVVTWNTMIGG 156

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y  AG++  A+ELF LMPQ N   WNA+I    RN     A++L    FQ+    +  + 
Sbjct: 157 YAQAGHLDNATELFGLMPQWNEVCWNALISGMGRNRRLPDALEL----FQALPFRDMVSW 212

Query: 244 TSILTSCEGMLENMLAHALAIRL------------------GFEQETSLTYKCT------ 279
            +++  C    +   A  L  R+                  GF QE    +         
Sbjct: 213 IAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKDAA 272

Query: 280 -CHYVFWDWGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
             + +   +G   ++  A+  F+   + +DV+SW A++ A+S +GH  Q   +FA M   
Sbjct: 273 AVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGIFAGMDLE 332

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGR---KTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           G  PD I+FV  L  C+    + +G+   +   L S+   F   A   + L +   + G+
Sbjct: 333 GIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFV-EASLATALVNFYAKCGR 391

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGA 421
           + EA  +   M     D ++L ++LGA
Sbjct: 392 LDEARSLFDAMA--FCDAILLNSMLGA 416


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/528 (29%), Positives = 251/528 (47%), Gaps = 66/528 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G   +  K+FDEM   + VS   +I+ + +N +L KA  LF  M  S             
Sbjct: 136 GSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLL 195

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     NI  E+A+ + YV+ G ++ A+ VFD +   N  
Sbjct: 196 QSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAV 255

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT-TVVLGCAHNGLIAKLEVISWTTM 149
           +WT L+ GY +A++++    LF RM ++   +  +  ++VL                  +
Sbjct: 256 TWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL-----------------KV 298

Query: 150 CTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C  LE   M K    + V++  + ++     ++  YV  G++  A   F  + + N  +W
Sbjct: 299 CCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE-NM--LAHALAIR 265
           +A+I  ++++G     +K+   +     + N    TS+  +C      NM   AH  AI+
Sbjct: 359 SALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK 418

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G     S  Y  +     +    +LD   AR AFE ++  D V+WTA+I  Y+ HG+  
Sbjct: 419 RGL---VSYLYGESAMVTMYSKCGRLDY--ARRAFESIDEPDAVAWTAIISGYAYHGNAA 473

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +    F RM   G +P+ +TF+ VL+ CSH+GLV + ++    MSR YG KP  +HY C+
Sbjct: 474 EALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCM 533

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D   RAG + EA+ ++++M P E D +   +LLG C  H D+++     E L  L P  
Sbjct: 534 IDTYSRAGLLXEALELINRM-PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGD 592

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +  Y+L  N+++A G+W+E   VRK M ER +KK  S S I VKG+ H
Sbjct: 593 TAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVH 640



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 164/436 (37%), Gaps = 46/436 (10%)

Query: 8   GKVKEATKLFDEMSQPD----PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--E 61
           GK+KEA     EM   D    P S   +     +   L     +   +  + +N     E
Sbjct: 66  GKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIE 125

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++  Y   G   + +KVFDE+   N+ SW  +IS Y K  ++++  RLF  M      
Sbjct: 126 NCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQAS--- 182

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                    G   N  +     +S    C G     + K    + ++   N +I    A+
Sbjct: 183 ---------GIRPNSAV----YMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAI 229

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
              YV  G +  A  +F+ M  +N  TW  ++  Y +      A++L   M       +E
Sbjct: 230 CNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDE 289

Query: 241 TTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
              + +L  C  + +       H+  ++LG E E S+       YV        D+ SA 
Sbjct: 290 FVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCG-----DIESAY 344

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
            +F R+   + VSW+A+I  +S  G      ++F  +   G   +   +  V   C+   
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404

Query: 358 LVEKGRKTF------NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            +  G +         L+S  YG       YS       + G++  A R    +   E D
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYS-------KCGRLDYARRAFESID--EPD 455

Query: 412 HVVLGALLGACRLHGD 427
            V   A++     HG+
Sbjct: 456 AVAWTAIISGYAYHGN 471


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/535 (27%), Positives = 256/535 (47%), Gaps = 70/535 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           GK+++A  LFD+M + D  S  ++++ + ++  +   +A F  MP   R+ V+ +  I G
Sbjct: 72  GKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPF--RDSVSYNTTIAG 129

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
           +       E+ ++F  +                                       + GN
Sbjct: 130 FSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGN 189

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           V+ W +L   Y K  ++++ R LFD   L  KN+VSW  ++ G A NG   K        
Sbjct: 190 VFIWNALTDMYAKCGEIEQARWLFD--CLTKKNLVSWNLMISGYAKNGQPEK-------- 239

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
            C GL      +L+      MP  D V  + +I AY   G + +A  +F+   ++++  W
Sbjct: 240 -CIGLLHQ--MRLSG----HMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR 265
            AM+  YA+NG E  A+ L N M      P+  T +S+++SC     +      H  +I 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G     +L        ++   GF   ++ AR  F  +  ++VVSW AMI+  + +GH  
Sbjct: 351 AGLN--NNLLVSSALIDMYSKCGF---IDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDK 405

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
               LF  ML+   KPD +TF+G+LS C H   +E+G++ F+ ++  +G  P  +HY+C+
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACM 465

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            ++L R G++++A+ ++  M  H+ D ++   LL  C   GD+  A+     L EL P+ 
Sbjct: 466 VNLLGRTGRIEQAVALIKNM-AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTI 524

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
           +  Y++ +N++A+ G W + A VR  M+ + VKK A FS IE+  + H   +  R
Sbjct: 525 AVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDR 579



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 182/421 (43%), Gaps = 66/421 (15%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G++ +A+ +FD++ + +++SW +L+S Y K+  +   +  FDRMP   ++ VS+ T
Sbjct: 68  YAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP--FRDSVSYNT 125

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLER---------NAMTKLAREYFVQMPNKDIVA-- 176
            + G + N    +   +       G E          NA  +L+   + +  +  I+   
Sbjct: 126 TIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRN 185

Query: 177 -------WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                  WNA+   Y   G + QA  LF+ + ++N+ +WN MI  YA+NG     + LL+
Sbjct: 186 FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLH 245

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            M  S  MP++ T ++I+ +                            C C         
Sbjct: 246 QMRLSGHMPDQVTMSTIIAA---------------------------YCQCGR------- 271

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V+ AR  F   + KD+V WTAM++ Y+ +G       LF  ML    +PD  T   V
Sbjct: 272 ---VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           +S C+    +  G+      S   G        S L D+  + G + +A  V + MP   
Sbjct: 329 VSSCAKLASLHHGQAVHG-KSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPT-- 385

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGEWDEFA 466
           R+ V   A++  C  +G  + A  + E +++   +P + +   +LSA +H     W E  
Sbjct: 386 RNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHC---NWIEQG 442

Query: 467 Q 467
           Q
Sbjct: 443 Q 443



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 47/228 (20%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG------------------ 219
           N ++  Y   G +  A  LF+ M +R++++WNA++  YA++G                  
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 220 --------------PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
                         P+  +++L   M +  F P E T  SIL        N  A    +R
Sbjct: 122 SYNTTIAGFSGNSCPQ-ESLELFKRMQREGFEPTEYTIVSIL--------NASAQLSDLR 172

Query: 266 LGFEQETSLTYKCTCHYVF-WDWGFQL-----DVNSARLAFERLEAKDVVSWTAMILAYS 319
            G +   S+  +     VF W+    +     ++  AR  F+ L  K++VSW  MI  Y+
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
            +G   +   L  +M  SG  PD++T   +++     G V++ R+ F+
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 237/449 (52%), Gaps = 44/449 (9%)

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---L 119
           ++I  Y + GRV  ARKVFDEI   ++ SW S+I+GY KA    E   +F  M  +    
Sbjct: 156 SLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFE 215

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW-- 177
            + +S  +V+  C   G +  LE+  W                 E FV      + ++  
Sbjct: 216 PDEMSLVSVLGAC---GELGDLELGRWV----------------EGFVVERGMTLNSYIG 256

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +A+I+ Y   G++  A  +F+ M  R+V TWNA+I  YA+NG    A+ L + M +    
Sbjct: 257 SALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVT 316

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD----- 292
            N+ T T++L++C        A   A+ LG + +   + +   H +F      +D     
Sbjct: 317 ENKITLTAVLSAC--------ATIGALDLGKQIDEYASQRGFQHDIFVATAL-IDMYAKC 367

Query: 293 --VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK--SGTKPDEITFVG 348
             + SA+  F+ +  K+  SW AMI A ++HG   +   LF  M     G +P++ITFVG
Sbjct: 368 GSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVG 427

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +LS C HAGLV +G + F++MS  +G  P+ EHYSC+ D+L RAG + EA  ++ KM P 
Sbjct: 428 LLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKM-PE 486

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           + D V LGALLGACR   +V + + +   ++E+ PS+SG Y++S+ ++A    W++ A++
Sbjct: 487 KPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARM 546

Query: 469 RKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           R  M ++ + K    S IEV+   H   A
Sbjct: 547 RLLMRQKGITKTPGCSWIEVENHLHEFHA 575



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 152/405 (37%), Gaps = 96/405 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------PESQR---- 56
           G+V  A K+FDE+ + D VS  SMI  + +     +A  +F  M       P+       
Sbjct: 165 GRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSV 224

Query: 57  ---------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N    SA+I  Y K G +  AR++FD +   +V
Sbjct: 225 LGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDV 284

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP--LKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +W ++ISGY +    DE   LF  M      +N ++ T V+  CA  G +         
Sbjct: 285 ITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGAL--------- 335

Query: 148 TMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                     + K   EY  Q     DI    A+I  Y   G++A A  +F  MPQ+N  
Sbjct: 336 ---------DLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEA 386

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           +WNAMI   A +G    A+ L   M        PN+ T   +L++C         HA  +
Sbjct: 387 SWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC--------VHAGLV 438

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             G+                       D+ S            +  ++ M+   +  GH 
Sbjct: 439 NEGYR--------------------LFDMMSTLFGL----VPKIEHYSCMVDLLARAGHL 474

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           ++ + L  +M +   KPD++T   +L  C     V+ G +   ++
Sbjct: 475 YEAWDLIEKMPE---KPDKVTLGALLGACRSKKNVDIGERVIRMI 516



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 45/267 (16%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
           S +   G +  A ++FD M+  D ++  ++I+ + +N    +A +LF AM E     N +
Sbjct: 261 SMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKI 320

Query: 60  AESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             +A++      G +D  +++ DE      ++ +++  T+LI  Y K   +   +R+F  
Sbjct: 321 TLTAVLSACATIGALDLGKQI-DEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKE 379

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-- 172
           MP K +                        SW  M + L  +   K A   F  M ++  
Sbjct: 380 MPQKNE-----------------------ASWNAMISALASHGKAKEALSLFQCMSDEGG 416

Query: 173 ----DIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVWTWNAMIDRYARNGPEGA 223
               + + +  +++A V AG + +   LF++M         +  ++ M+D  AR G    
Sbjct: 417 GARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYE 476

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A  L+  M +    P++ T  ++L +C
Sbjct: 477 AWDLIEKMPEK---PDKVTLGALLGAC 500


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/479 (30%), Positives = 239/479 (49%), Gaps = 36/479 (7%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           ++  S ++D Y K G + +A+KVF  + + N   + +L+ G      +++  +LF  M  
Sbjct: 171 LLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME- 229

Query: 118 KLKNVVSWTTVVLGCAHNGLIA---------KLEVI--------SWTTMCTGLERNAMTK 160
             K+ VSW+ ++ G A NG+           K+E +        S    C GL      +
Sbjct: 230 --KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGR 287

Query: 161 LAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                 ++   +D I   +A+I  Y     +  A  +F+ M Q+NV +W AM+  Y + G
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 347

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTY 276
             G A+K+   M +S   P+  T    +++C     + E    H  AI  G     +++ 
Sbjct: 348 RAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSN 407

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y     G   D++ +   F  +  +D VSWTAM+ AY+  G   +  +LF +M++
Sbjct: 408 SLVTLY-----GKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQ 462

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
            G KPD +T  GV+S CS AGLVEKG++ F LM   YG  P   HYSC+ D+  R+G+++
Sbjct: 463 LGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIE 522

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EAM  ++ M P   D +    LL ACR  G++ +  +  E LIEL P     Y L ++++
Sbjct: 523 EAMGFINGM-PFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIY 581

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           A++G+WD  AQ+R+ M E+ V+K    S I+ KGK H+  A     P  +  Y  L+E+
Sbjct: 582 ASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEEL 640



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 197/467 (42%), Gaps = 92/467 (19%)

Query: 47  LFRAMPESQ----RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           + R +P  +     NIV   A+I   + A      R+VFD I + N++SW +L+  Y K+
Sbjct: 29  IIRTLPHPETFLHNNIVHAYALIRSSIYA------RRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN------ 156
             + E  R F+++P   ++ V+W  ++ G + +GL+    V ++ TM      N      
Sbjct: 83  GHLSEMERTFEKLP--DRDGVTWNVLIEGYSLSGLVGA-AVKAYNTMMKDFSSNLTRVTL 139

Query: 157 -AMTKL--------------------------------------------AREYFVQMPN 171
             M KL                                            A++ F  + +
Sbjct: 140 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDD 199

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           ++ V +N ++   +  G +  A +LF  M + +V +W+AMI   A+NG E  A++    M
Sbjct: 200 RNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSV-SWSAMIKGLAQNGMEKEAIECFREM 258

Query: 232 FQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQE-------TSLTYKCTC- 280
                  ++    S+L +C G+    +    HA  IR   +           +  KC C 
Sbjct: 259 KIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCL 318

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           HY             A+  F+R++ K+VVSWTAM++ Y   G   +  ++F  M +SG  
Sbjct: 319 HY-------------AKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGID 365

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD  T    +S C++   +E+G + F+  +   G        + L  +  + G + ++ R
Sbjct: 366 PDHYTLGQAISACANISSLEEGSQ-FHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTR 424

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           + ++M  + RD V   A++ A    G    A  + +++++L     G
Sbjct: 425 LFNEM--NVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG 469



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 17/203 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +I   SA+ID Y K   +  A+ VFD + + NV SWT+++ GY +  +  E  ++F  
Sbjct: 299 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLD 358

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M    ++ +      LG A    I+    IS     +     A+T     Y        I
Sbjct: 359 MQ---RSGIDPDHYTLGQA----ISACANISSLEEGSQFHGKAITAGLIHY--------I 403

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+++T Y   G++  ++ LFN M  R+  +W AM+  YA+ G    A++L + M Q 
Sbjct: 404 TVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQL 463

Query: 235 RFMPNETTCTSILTSCE--GMLE 255
              P+  T T ++++C   G++E
Sbjct: 464 GLKPDGVTLTGVISACSRAGLVE 486



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 28/228 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRN- 57
           +G TG+  EA K+F +M +    PD  +    I+       L +      +A+     + 
Sbjct: 343 YGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHY 402

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-P 116
           I   ++++  Y K G +D++ ++F+E+   +  SWT+++S Y +  +  E  +LFD+M  
Sbjct: 403 ITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQ 462

Query: 117 LKLK-NVVSWTTVVLGCAHNGLIAK----LEVI-----------SWTTMCTGLERNAMTK 160
           L LK + V+ T V+  C+  GL+ K     E++            ++ M     R+   +
Sbjct: 463 LGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIE 522

Query: 161 LAREYFVQMPNK-DIVAWNAMITAYVDAGNMA----QASELFNLMPQR 203
            A  +   MP + D + W  +++A  + GN+      A  L  L P  
Sbjct: 523 EAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHH 570



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAE 61
           +G  G + ++T+LF+EM+  D VS  +M++ + +     +A  LF  M +   + + V  
Sbjct: 413 YGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTL 472

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYE--GNVYS---WTSLISGYFKARQVDEGRRLFDRMP 116
           + +I    +AG V++ ++ F+ +    G V S   ++ +I  + ++ +++E     + MP
Sbjct: 473 TGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMP 532

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +  + + WTT++  C + G    LE+  W               A E  +++       
Sbjct: 533 FR-PDAIGWTTLLSACRNKG---NLEIGKW---------------AAESLIELDPHHPAG 573

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV 205
           +  + + Y   G     ++L   M ++NV
Sbjct: 574 YTLLSSIYASKGKWDCVAQLRRGMKEKNV 602



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR 56
            S +   G+  EA +LFD+M Q    PD V+   +I+   R   + K +  F  M  ++ 
Sbjct: 441 VSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMI-NEY 499

Query: 57  NIVAE----SAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLIS 97
            IV      S MID + ++GR++EA    + + +  +   WT+L+S
Sbjct: 500 GIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 239/537 (44%), Gaps = 121/537 (22%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----------- 51
           + G  G+V+EA ++F+EM Q D VS  SMI  + +N  + +A  LF A            
Sbjct: 48  ELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTIL 107

Query: 52  ------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
                               ++RN+V+ +AMI GYV+ G +  ARK+FDE+ E NV SW 
Sbjct: 108 LTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWN 167

Query: 94  SLISGYFKARQVDEGRRLFDRMP------------------------------LKLKNVV 123
           S+++GY    ++ E R LFD+MP                               + +N  
Sbjct: 168 SVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEY 227

Query: 124 SWTTVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           SWTT++   A  G +            +    SW  M  G  +N  ++ A E  +++   
Sbjct: 228 SWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRS 287

Query: 173 DIV---------------------------------------AWNAMITAYVDAGNMAQA 193
             V                                         N +I+ Y   GN+   
Sbjct: 288 GSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDG 347

Query: 194 SELFNL--MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
           S +F    MP+R+V +W A+I  Y + G    A+ L   M      PN+ T TS+L++C 
Sbjct: 348 SHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACG 407

Query: 252 GMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
            +    L    HAL  +LGF+    +       Y      F+         FE +   D+
Sbjct: 408 NLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY------FKCGYEDGFCVFEEMPEHDL 461

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           ++W A+++  + +G G +  ++F +M   G  PD+++F+GVL  CSHAGLV++G   FN 
Sbjct: 462 ITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNS 521

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           M++ YG  P   HY+C+ D+L RAG + EA  ++  MP  + D V+  ALLGACR+H
Sbjct: 522 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPV-KPDSVIWEALLGACRIH 577



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 24/223 (10%)

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
           QET  T+   C+    + G    V  AR  F  +  +DVVSW +MI  YS +G   +   
Sbjct: 32  QETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 91

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF   +    +    T+  +L+  +  G +E+ R+ F  M+     +     ++ +    
Sbjct: 92  LFDAFVGKNIR----TWTILLTGYAKEGRIEEAREVFESMT-----ERNVVSWNAMISGY 142

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRLHGDVRMADYIGERLIELQP---SS 445
            + G +K A ++  +MP  E++     +++ G C  +   RM++     L +  P   S 
Sbjct: 143 VQNGDLKNARKLFDEMP--EKNVASWNSVVTGYCHCY---RMSE--ARELFDQMPERNSV 195

Query: 446 SGAYVLSANVHAAR--GEWDEFAQV-RKKMERR-VKKVASFSQ 484
           S   ++S  VH +     WD F ++ R + E      +A+F+Q
Sbjct: 196 SWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQ 238


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 212/424 (50%), Gaps = 61/424 (14%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I+ Y K G+  EARKVFD++   N+YSW +++SGY K   +   R+LFD+MP K  +VV
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK--DVV 158

Query: 124 SWTTVVLGCAHNG--------------LIAKLEVISWT---TMCTGLERNAMTKL----- 161
           SW T+V+  A  G              L  +    S+    T+C  L+   +T+      
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218

Query: 162 ---------------------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
                                      AR+ F +M  +D++AW  M++ Y   G+M  A+
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           ELF  MP++N  +W A+I  YARNG    A++L   M      P++ T +S L +C  + 
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA 338

Query: 255 ---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
                   HA  +R+ F+  T +       Y          +   R  F+ +  K DVV 
Sbjct: 339 SLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG-----SLGIGRKVFDLMGNKLDVVL 393

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W  +I A + HG G +  ++   M++SG KPD+ITFV +L+ CSH+GLV++G   F  MS
Sbjct: 394 WNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMS 453

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
             YG  P  EHY+CL D+L RAG  +E M  + KM P++ D  V  ALLG CR+HG +  
Sbjct: 454 CDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKM-PYKPDDRVWNALLGVCRIHGHIER 512

Query: 431 ADYI 434
            D +
Sbjct: 513 LDSL 516



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 62/307 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASM------------------------------ 31
           S +   G +K A KLFD+M + D VS  +M                              
Sbjct: 134 SGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGF 193

Query: 32  -------ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                  + V L+   L +       +     N+V  S+++D YVK G + +ARK+FDE+
Sbjct: 194 SFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEM 253

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV 143
              +V +WT+++SGY K   +     LF  MP   KN VSWT ++ G A NG+  K LE+
Sbjct: 254 SARDVLAWTTMVSGYAKWGDMKSANELFVEMP--EKNPVSWTALISGYARNGMGHKALEL 311

Query: 144 I----------------SWTTMCTGLERNAMTKLAREYFVQM---PNKDIVAWNAMITAY 184
                            S    C  +      K    Y +++   PN  +V+  A+I  Y
Sbjct: 312 FTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS--ALIDMY 369

Query: 185 VDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
              G++    ++F+LM  + +V  WN +I   A++G    A+++L+ M +S   P++ T 
Sbjct: 370 SKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITF 429

Query: 244 TSILTSC 250
             IL +C
Sbjct: 430 VVILNAC 436


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 226/442 (51%), Gaps = 33/442 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A+I  Y  AG +  AR VFDE+   +V SW SLIS   +A    E   LF    
Sbjct: 150 DLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEF- 208

Query: 117 LKLK---------NVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGL 153
           ++++         N V+ T+V+  CA   ++                +++  W ++    
Sbjct: 209 VRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFY 268

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
            +    + AR+    M  KD ++++AMIT Y++ G++ +  +LF     R +  WN++I 
Sbjct: 269 AKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIA 328

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQ 270
              +NG +   ++LL  M  S+ +PN  T + ++ S      +L    AH  AIR  ++Q
Sbjct: 329 GLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQ 388

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              L       Y     GF   +++AR  F+  E +  + WT++I A + HG   +   L
Sbjct: 389 SIRLVSALIDAYA--KAGF---LDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSL 443

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F +M+ +G KPD +TF  VLS C+H+G V + RK FN M   +G  P  E Y+C+   L 
Sbjct: 444 FNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALS 503

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG +KEA+++V+KM P E +  V GALL    + GDV    Y  +RL  ++P ++G Y+
Sbjct: 504 RAGMLKEAVKLVNKM-PFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYI 562

Query: 451 LSANVHAARGEWDEFAQVRKKM 472
           + AN+++  G+W+E   +R  +
Sbjct: 563 VMANLYSNAGKWEEAETIRSML 584



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 212/488 (43%), Gaps = 79/488 (16%)

Query: 23  PDPVSCASMITVFLRNHDLPKA---EALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
           PDP +   +I +   +  L  A    A   A   +  N +A S +I  Y +A R+ +AR+
Sbjct: 12  PDPRAYGHLIQLCAESGHLAAARQIHARLVAASVTPSNFLA-SKLISLYSRADRLRDARR 70

Query: 80  VFDEIYEGNVYSWTS-LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           VFD I + ++++W + LIS    +       RLF        + VS   + L      L 
Sbjct: 71  VFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLFA------SSAVSPDEITLSTLLRSLA 124

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A    +S   + TG       +L    F++    D+   NA+ITAY +AG+M  A  +F+
Sbjct: 125 ASGPALS--PLVTG-------ELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFD 175

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR------FMPNETTCTSILTSCEG 252
            MP+R+V +WN++I   AR G     + L     + R        PN  T TS+L +C  
Sbjct: 176 EMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQ 235

Query: 253 MLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER-----LE 304
           +      +  H  A   G + + ++          W+          RL + R     + 
Sbjct: 236 LKVVDFGIGVHRFAAESGLDMDMAV----------WNSIIGFYAKCGRLQYARQLLDGMT 285

Query: 305 AKDVVSWTAMILAYSNHGH---GFQVFR------------LFARMLKSGTKPD------E 343
            KD +S++AMI  Y N+GH   G Q+FR            + A ++++G + D      E
Sbjct: 286 RKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQE 345

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLM---SRAYGFKPRAEH------YSCLADILRRAGQ 394
           +    VL + +   +V     +F+ +    +A+G+  R ++       S L D   +AG 
Sbjct: 346 MIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGF 405

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVL 451
           +  A R V K+  H R  +V  +++ A   HG+   A  +  ++I    +P + +   VL
Sbjct: 406 LDTA-RKVFKLTEH-RSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVL 463

Query: 452 SANVHAAR 459
           SA  H+ +
Sbjct: 464 SACAHSGK 471



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 138/336 (41%), Gaps = 56/336 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+++ A +L D M++ D +S ++MIT ++ N  + +   LFR    S R I   +++I G
Sbjct: 272 GRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQ--ASARGISMWNSVIAG 329

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
            V+ GR  +  ++  E+    V   ++ +S                   + + +V S++T
Sbjct: 330 LVQNGRQSDVLRLLQEMIASKVLPNSATLS-------------------IVMPSVPSFST 370

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           ++     +G   + +      + + L     +      AR+ F    ++  + W ++I+A
Sbjct: 371 LLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISA 430

Query: 184 YVDAGNMAQASELFNLM----PQRNVWTWNAMIDRYARNGPEGAAMKLLNLM---FQSRF 236
               G   +A  LFN M     + +  T+  ++   A +G    A K+ N M   F    
Sbjct: 431 VAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVFNSMQAVFGISP 490

Query: 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL----- 291
           +  +  C     S  GML+   A  L  ++ FE    +            WG  L     
Sbjct: 491 VIEQYACMVSALSRAGMLKE--AVKLVNKMPFEPNAKV------------WGALLNGAAV 536

Query: 292 --DVNSARLAFERL---EAKDVVSWTAMILAYSNHG 322
             DV   R AF+RL   E K+  ++  M   YSN G
Sbjct: 537 VGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAG 572


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 247/488 (50%), Gaps = 35/488 (7%)

Query: 19  EMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDE 76
           EM  P+ ++   ++   +  +D+     L   + +S    N    SA++D Y K G VDE
Sbjct: 172 EMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDE 231

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGC 132
           A+  FDE+   ++  W  ++S Y  A    +G+       ++L+ V     ++T+++  C
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCY--ALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSC 289

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
              G++             GL +     + R  F    + D++  +A++  Y    N+  
Sbjct: 290 ---GVLGS----------CGLGKQVHGLIIRLSF----DLDVLVASALVDMYSKNENIED 332

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A + F+ M  +N+ +W  MI  Y ++G    AM+LL  M +    P+E    SIL+SC  
Sbjct: 333 ARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGN 392

Query: 253 ML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           +    E +  HA  +  GFE   S+       Y          + SA  +F  +   D++
Sbjct: 393 LSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCG-----SIGSAFQSFSSVAEPDII 447

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SWT+++ AY+ HG   +   +F +ML S  +PD++ F+GVLS C+H G V +G   FNLM
Sbjct: 448 SWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLM 507

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              Y   P +EHY+C+ D+L RAG + EA+ +++ MP   R    LGA LGAC++H +V 
Sbjct: 508 INVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSD-TLGAFLGACKVHRNVG 566

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK-KVASFSQIEVK 488
           +A +  E+L  ++P+    Y L +N++A+ G W + A+VRK M  R   KV   S +E+ 
Sbjct: 567 LARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEIA 626

Query: 489 GKDHTLLA 496
           G+ HT ++
Sbjct: 627 GEVHTFVS 634



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 181/414 (43%), Gaps = 59/414 (14%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF----KARQVDEGRRLFDRMPLKLKNVV 123
           YVK    ++  K+FDE+   NV SW +LI G      K   V  G   F +M L++   +
Sbjct: 118 YVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEM---M 174

Query: 124 SWTTVVLGCAHNGLI-AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           +   + L    NGL+ A +E+        G+ R     + +  F    + +    +A++ 
Sbjct: 175 APNCITL----NGLLRASIELND-----VGICRQLHCFILKSGF----DSNCFVGSALVD 221

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           +Y   G + +A   F+ +  R++  WN M+  YA NG +G A  +  LM       +  T
Sbjct: 222 SYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFT 281

Query: 243 CTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
            TS++ SC G+L +       H L IRL F+ +  +       Y   +     ++  AR 
Sbjct: 282 FTSMINSC-GVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNE-----NIEDARK 335

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS---- 354
           AF+ +  K++VSWT MI+ Y  HG G +  RL   M++  T PDE+    +LS C     
Sbjct: 336 AFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSA 395

Query: 355 -------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
                  HA +VE G + F  ++ A            L     + G +  A +  S +  
Sbjct: 396 TSEVVQVHAYVVENGFEAFLSIANA------------LVSAYSKCGSIGSAFQSFSSVA- 442

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSSSGAY-VLSANVHAA 458
            E D +   +L+GA   HG  +    + E+++   ++P       VLSA  H  
Sbjct: 443 -EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGG 495


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/544 (28%), Positives = 258/544 (47%), Gaps = 67/544 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE------ 61
           G V  A +LFD +  PD     S+I  +  +H   +A  L R M   +R I+        
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGM--IRRGILPNEFTLPF 115

Query: 62  ---------------------------------SAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                            +A++  Y  AG + ++R+ FDE+ + N
Sbjct: 116 LLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRN 175

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SW S+I+GY +A    E   LF+ M  +  L +  +  +++  C+  G +   +++  
Sbjct: 176 VVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHS 235

Query: 147 TTMCTG-----LERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
             +  G     +  NA+  +         A   F  MP K+ V+W +M+ A     ++  
Sbjct: 236 HLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDA 295

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A + F  +P++++ +WNAMI  Y + G    A+ L N M      P+E T  ++L++C G
Sbjct: 296 ARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSAC-G 354

Query: 253 MLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            L ++ +  +    IR  F       +      ++   G    V++A   F  + +K+V+
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLD-MYARCG---QVDTAISLFSEMPSKNVI 410

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW A+I A + HG        F  M+     PDEITFV +LS C+H GL+E G+  F  M
Sbjct: 411 SWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAM 470

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              Y  KP  EHY+C+ D+L R GQ+ +A+ ++  M P   D VV GALLGACR+HG ++
Sbjct: 471 RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDM-PMRPDVVVWGALLGACRIHGHIQ 529

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +   + ++L+EL+  S G +VL +N+     +W++  ++RK M E  +KK    S IE  
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 489 GKDH 492
              H
Sbjct: 590 SNIH 593


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 251/518 (48%), Gaps = 69/518 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++ +A K+F+ M+    VS  +M++ +  N+D   A  +FR M  +         
Sbjct: 180 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG-------- 231

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
                                 E N+ +WTSL+S + +  Q  E   LF RM ++     
Sbjct: 232 ---------------------LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 270

Query: 124 SWTTVVLGCAHNGLIAKLE--VISWTTMCTGLE-----RNAMTKL---------AREYFV 167
           +    V+      L A  E  VI    +  G E     +N++  L         AR  F+
Sbjct: 271 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 330

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELF--------NLMPQRNVWTWNAMIDRYARNG 219
           ++  K+IV+WNA+I++Y D G   +A  +F          M + NV +W+A+I  +A  G
Sbjct: 331 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKG 390

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
               A++L   M  ++   N  T  S+L+ C        A   A+ LG E    +     
Sbjct: 391 QGEEALELFRRMQLAKVKANSVTIASVLSVC--------AELAALHLGREIHGHVVRSLM 442

Query: 280 CHYVFWDWGF------QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
              +    G               L FE++E KD++SW  M+  Y  HG G    R F +
Sbjct: 443 DGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQ 502

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M+K G +PD +TFV VLS CSHAGLV +GR+ F+ M + +  +P+ EHY+C+ D+L RAG
Sbjct: 503 MIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAG 562

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EA +VV  MP  E +  V GALL +CR+H +  +A+    ++  L    +G+Y+L +
Sbjct: 563 LLQEASKVVKSMPV-EPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 621

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           N++AA G W++ A+VR   + + +KK    S I+VK K
Sbjct: 622 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKK 659



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 69/366 (18%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGR 109
           S R+    + ++  Y   G V +A++VF+    E +  N+  W S++         +E  
Sbjct: 62  SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS-NLLLWNSILRANVAHGYCEEAL 120

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            ++ RM              LG + +G    L + +    C  +    + +    + V+M
Sbjct: 121 EIYCRMR------------KLGVSADGFTFPLVIRA----CALMGSRKLCRSVHGHVVEM 164

Query: 170 PNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
             + ++   N ++  Y   G M  A ++F  M  R+  +WN M+  YA N     A ++ 
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224

Query: 229 NLMFQSRFMPNETTCTSILTS---CEGMLENM---------------------------- 257
            +M  +   PN  T TS+L+S   C   +E M                            
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284

Query: 258 -------LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                  + H   ++ GFE    +     C Y     G   +VN+AR+ F  ++ K++VS
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLY-----GKHGNVNAARILFLEIKTKNIVS 339

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSG----TKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           W A+I +Y++ G   + F +F ++ K+      +P+ +++  V+   +  G  E+  + F
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399

Query: 367 NLMSRA 372
             M  A
Sbjct: 400 RRMQLA 405


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 216/421 (51%), Gaps = 35/421 (8%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG 131
           G +  A KVF E+ E NV  WTS+I+GY   + +   RR FD  P +             
Sbjct: 42  GVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPER------------- 88

Query: 132 CAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
                     +++ W TM +G +E   M + AR  F QMP +D+++WN ++  Y + G+M
Sbjct: 89  ----------DIVLWNTMISGYIEMGNMLE-ARSLFDQMPCRDVMSWNTVLEGYANIGDM 137

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTS 249
                +F+ MP+RNV++WN +I  YA+NG     +     M  +   +PN+ T T +L++
Sbjct: 138 EACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSA 197

Query: 250 CE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C   G  +     H     LG+ +   +  K     ++   G    +  A   F+ ++ +
Sbjct: 198 CAKLGAFDFGKWVHKYGETLGYNK-VDVNVKNALIDMYGKCG---AIEIAMEVFKGIKRR 253

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           D++SW  MI   + HGHG +   LF  M  SG  PD++TFVGVL  C H GLVE G   F
Sbjct: 254 DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYF 313

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           N M   +   P  EH  C+ D+L RAG + +A+  ++KMP  + D V+   LLGA +++ 
Sbjct: 314 NSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPV-KADAVIWATLLGASKVYK 372

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQI 485
            V + +   E LI+L+P +   +V+ +N++   G +D+ A+++  M +   KK A  S I
Sbjct: 373 KVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWI 432

Query: 486 E 486
           E
Sbjct: 433 E 433



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 138/276 (50%), Gaps = 28/276 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+F EM + + V   SMI  +L N DL  A   F   PE  R+IV  + MI G
Sbjct: 42  GVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPE--RDIVLWNTMISG 99

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y++ G + EAR +FD++   +V SW +++ GY     ++   R+FD MP   +NV SW  
Sbjct: 100 YIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP--ERNVFSWNG 157

Query: 128 VVLGCAHNGLIAKL-----------EVISWTTMCTGLERNAMTKLAREYFVQMPNK---- 172
           ++ G A NG ++++            V+      T L  +A  KL    F +  +K    
Sbjct: 158 LIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMT-LVLSACAKLGAFDFGKWVHKYGET 216

Query: 173 ------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
                 D+   NA+I  Y   G +  A E+F  + +R++ +WN MI+  A +G    A+ 
Sbjct: 217 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALN 276

Query: 227 LLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAH 260
           L + M  S   P++ T   +L +C+  G++E+ LA+
Sbjct: 277 LFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAY 312


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 251/518 (48%), Gaps = 69/518 (13%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            +G  G++ +A K+F+ M+    VS  +M++ +  N+D   A  +FR M  +         
Sbjct: 1018 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG-------- 1069

Query: 64   MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
                                  E N+ +WTSL+S + +  Q  E   LF RM ++     
Sbjct: 1070 ---------------------LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 1108

Query: 124  SWTTVVLGCAHNGLIAKLE--VISWTTMCTGLE-----RNAMTKL---------AREYFV 167
            +    V+      L A  E  VI    +  G E     +N++  L         AR  F+
Sbjct: 1109 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 1168

Query: 168  QMPNKDIVAWNAMITAYVDAGNMAQASELF--------NLMPQRNVWTWNAMIDRYARNG 219
            ++  K+IV+WNA+I++Y D G   +A  +F          M + NV +W+A+I  +A  G
Sbjct: 1169 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKG 1228

Query: 220  PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
                A++L   M  ++   N  T  S+L+ C        A   A+ LG E    +     
Sbjct: 1229 QGEEALELFRRMQLAKVKANSVTIASVLSVC--------AELAALHLGREIHGHVVRSLM 1280

Query: 280  CHYVFWDWGF------QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
               +    G               L FE++E KD++SW  M+  Y  HG G    R F +
Sbjct: 1281 DGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQ 1340

Query: 334  MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
            M+K G +PD +TFV VLS CSHAGLV +GR+ F+ M + +  +P+ EHY+C+ D+L RAG
Sbjct: 1341 MIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAG 1400

Query: 394  QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
             ++EA +VV  MP  E +  V GALL +CR+H +  +A+    ++  L    +G+Y+L +
Sbjct: 1401 LLQEASKVVKSMPV-EPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 1459

Query: 454  NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
            N++AA G W++ A+VR   + + +KK    S I+VK K
Sbjct: 1460 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKK 1497



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 150/366 (40%), Gaps = 69/366 (18%)

Query: 54   SQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGR 109
            S R+    + ++  Y   G V +A++VF+    E +  N+  W S++         +E  
Sbjct: 900  SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS-NLLLWNSILRANVAHGYCEEAL 958

Query: 110  RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
             ++ RM              LG + +G    L + +    C  +    + +    + V+M
Sbjct: 959  EIYCRMRK------------LGVSADGFTFPLVIRA----CALMGSRKLCRSVHGHVVEM 1002

Query: 170  PNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
              + ++   N ++  Y   G M  A ++F  M  R+  +WN M+  YA N     A ++ 
Sbjct: 1003 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 1062

Query: 229  NLMFQSRFMPNETTCTSILTS---CEGMLENM-------------LAHALAIRL------ 266
             +M  +   PN  T TS+L+S   C   +E M              A ALA+ L      
Sbjct: 1063 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 1122

Query: 267  ----------------GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                            GFE    +     C Y     G   +VN+AR+ F  ++ K++VS
Sbjct: 1123 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLY-----GKHGNVNAARILFLEIKTKNIVS 1177

Query: 311  WTAMILAYSNHGHGFQVFRLFARMLKSG----TKPDEITFVGVLSDCSHAGLVEKGRKTF 366
            W A+I +Y++ G   + F +F ++ K+      +P+ +++  V+   +  G  E+  + F
Sbjct: 1178 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 1237

Query: 367  NLMSRA 372
              M  A
Sbjct: 1238 RRMQLA 1243


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 233/467 (49%), Gaps = 34/467 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++     +ID Y K G +++AR+V + + E +V SWTS+I+GY +     +    F  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 115 MPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M       + +   + + GCA  G+ A         M  GL+ +A        +V   + 
Sbjct: 437 MQKCGIWPDNIGLASAISGCA--GINA---------MRQGLQIHA------RIYVSGYSG 479

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+  WNA++  Y   G + +A   F  +  ++  TWN ++  +A++G    A+K+   M 
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           QS    N  T  S L++   + E       HA  I+ G   ET +       Y     G 
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY-----GK 594

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                 A++ F  +  ++ VSW  +I + S HG G +   LF +M K G KP+++TF+GV
Sbjct: 595 CGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH GLVE+G   F  MS  YG +PR +HY+C+ DI  RAGQ+  A + + +MP   
Sbjct: 655 LAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI-A 713

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D +V   LL AC++H ++ + ++  + L+EL+P  S +YVL +N +A   +W    QVR
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVR 773

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           K M +R V+K    S IEVK   H       L P+ E  Y  L  ++
Sbjct: 774 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVIN 820



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 182/424 (42%), Gaps = 43/424 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE----S 62
            G V  A ++F+E+S  D VS  +M++ + +N    +A  L+R M  +   +V      S
Sbjct: 90  NGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA--GVVPTPYVLS 147

Query: 63  AMIDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +++    KA    + R +  + Y+      ++   ++I+ Y +        R+F  MP  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-- 205

Query: 119 LKNVVSWTTVVLG---CAH-------------NGLIAKLEVI-SWTTMCTGL-ERNAMTK 160
            ++ V++ T++ G   C H             +GL      I S    C  L +    T+
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           L    F    + D +   +++  YV  G++  A  +FN   + NV  WN M+  + +   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
              + +L   M  +   PN+ T   IL +C    E  L    H+L+++ GFE +  ++  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y  + W     +  AR   E L+ KDVVSWT+MI  Y  H         F  M K 
Sbjct: 386 LIDMYSKYGW-----LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQV 395
           G  PD I     +S C  AG +   R+   + +R Y  G+      ++ L ++  R G++
Sbjct: 441 GIWPDNIGLASAISGC--AG-INAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 396 KEAM 399
           +EA 
Sbjct: 498 REAF 501



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 28/354 (7%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V  AR+VF+E+   +  SW +++SGY +    +E   L+ +M    +  V
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH---RAGV 139

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAWNAMIT 182
             T  VL              S  + CT  E  A  +L   + +      +I   NA+IT
Sbjct: 140 VPTPYVLS-------------SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+   A  +F  MP R+  T+N +I  +A+ G    A+++   M  S   P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 CTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            +S+L +C     + +    H+   + G   +  +       YV        DV +A + 
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-----DVETALVI 301

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F   +  +VV W  M++A+       + F LF +M  +G +P++ T+  +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           + G +  +L S   GF+        L D+  + G +++A RV+  +   E+D V
Sbjct: 362 DLGEQIHSL-SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK--EKDVV 412



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  N +I  Y   G +  A  +F  +  R+  +W AM+  YA+NG    A+ L   M ++
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +P     +S+L+SC   E   +  L HA   + GF  E  +       Y        L
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--------L 189

Query: 292 DVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              S RLA   F  +  +D V++  +I  ++  GHG     +F  M  SG  PD +T   
Sbjct: 190 RCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISS 249

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L+ C+  G ++KG +  + + +A G          L D+  + G V+ A+ + +     
Sbjct: 250 LLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVIFNS---S 305

Query: 409 ERDHVVLGALL 419
           +R +VVL  L+
Sbjct: 306 DRTNVVLWNLM 316


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 251/518 (48%), Gaps = 69/518 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++ +A K+F+ M+    VS  +M++ +  N+D   A  +FR M  +         
Sbjct: 180 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG-------- 231

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
                                 E N+ +WTSL+S + +  Q  E   LF RM ++     
Sbjct: 232 ---------------------LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 270

Query: 124 SWTTVVLGCAHNGLIAKLE--VISWTTMCTGLE-----RNAMTKL---------AREYFV 167
           +    V+      L A  E  VI    +  G E     +N++  L         AR  F+
Sbjct: 271 AEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFL 330

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELF--------NLMPQRNVWTWNAMIDRYARNG 219
           ++  K+IV+WNA+I++Y D G   +A  +F          M + NV +W+A+I  +A  G
Sbjct: 331 EIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKG 390

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
               A++L   M  ++   N  T  S+L+ C        A   A+ LG E    +     
Sbjct: 391 QGEEALELFRRMQLAKVKANSVTIASVLSVC--------AELAALHLGREIHGHVVRSLM 442

Query: 280 CHYVFWDWGF------QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
              +    G               L FE++E KD++SW  M+  Y  HG G    R F +
Sbjct: 443 DGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQ 502

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M+K G +PD +TFV VLS CSHAGLV +GR+ F+ M + +  +P+ EHY+C+ D+L RAG
Sbjct: 503 MIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAG 562

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EA +VV  MP  E +  V GALL +CR+H +  +A+    ++  L    +G+Y+L +
Sbjct: 563 LLQEASKVVKSMPV-EPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLS 621

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           N++AA G W++ A+VR   + + +KK    S I+VK K
Sbjct: 622 NIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKK 659



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 147/366 (40%), Gaps = 69/366 (18%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGR 109
           S R+    + ++  Y   G V +A++VF+    E +  N+  W S++         +E  
Sbjct: 62  SHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS-NLLLWNSILRANVAHGYCEEAL 120

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            ++ RM              LG + +G    L +      C  +    + +    + V+M
Sbjct: 121 EIYCRMR------------KLGVSADGFTFPLVI----RACALMGSRKLCRSVHGHVVEM 164

Query: 170 PNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
             + ++   N ++  Y   G M  A ++F  M  R+  +WN M+  YA N     A ++ 
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224

Query: 229 NLMFQSRFMPNETTCTSILTS---CEGMLENM---------------------------- 257
            +M  +   PN  T TS+L+S   C   +E M                            
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284

Query: 258 -------LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                  + H   ++ GFE    +     C Y     G   +VN+AR+ F  ++ K++VS
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLY-----GKHGNVNAARILFLEIKTKNIVS 339

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSG----TKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           W A+I +Y++ G   + F +F ++ K+      +P+ +++  V+   +  G  E+  + F
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399

Query: 367 NLMSRA 372
             M  A
Sbjct: 400 RRMQLA 405


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 235/470 (50%), Gaps = 28/470 (5%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +++ Y + G   +A+KVF+ I   ++ SWT LIS Y    Q  +   +F  +        
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 124 SWTTV--VLGCAH----------NGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
           S+  V  V  C H          +G++ + E+ S   +   L     R+   ++A   F 
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            M  KD+ +W +++  ++   ++  A  +F+ MP RN  +W AMI  Y +       ++L
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 222

Query: 228 LNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
              M  + +  P   T  ++L+ C  +    L  ++    G+  +T+L    T +    D
Sbjct: 223 FQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVH---GYVNKTNLDLDVTVNNALMD 279

Query: 287 -WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
            +     +  A   F+ +  +DV SWT MI   + HG G      F+ M KSG  P+E+T
Sbjct: 280 MYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVT 339

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + VLS CSHAGLV +GR  F  M + +G KP+ +HY C+ D+L RAG ++EA  ++  M
Sbjct: 340 LLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHM 399

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P  + D V+  +LL AC +HG++ +A+  G+ +IEL+P   G Y+L  N++ +   W++ 
Sbjct: 400 PI-KPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDA 458

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAP-----MREMGYVVLKEV 509
            + RK M +RRVKK    S +EV G  H  LA      +R   Y VL+ +
Sbjct: 459 LKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAI 508



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 58/299 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G   +A K+F+ +  PD VS   +I+++L      KA ++F  +      P+S       
Sbjct: 51  GSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAV 110

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     + +  +A+ID Y ++G ++ A  VF  +   +V 
Sbjct: 111 SACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVS 170

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVI----- 144
           SWTSL++G+ K   ++  RR+FD MP  ++N VSWT ++ G     + I  LE+      
Sbjct: 171 SWTSLLNGFIKCNDIEAARRIFDEMP--MRNSVSWTAMITGYVQGEVPIPGLELFQEMRA 228

Query: 145 ---SWTTMCT------GLERNAMTKLAREY--FVQMPN--KDIVAWNAMITAYVDAGNMA 191
               W T+ T      G        L      +V   N   D+   NA++  Y  +G + 
Sbjct: 229 EGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALV 288

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A ++F  MP+R+V++W  MI   A +G    A++  + M +S  +PNE T  S+L++C
Sbjct: 289 LALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSAC 347


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/524 (29%), Positives = 249/524 (47%), Gaps = 40/524 (7%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVS--CASMITVFLRNHDLPKAEALFRAMPESQRN 57
           FG    + ++ +LF +M     +P+  +  C        R  DL +           + +
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESD 379

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +     +ID Y K G +++AR+V + + E +V SWTS+I+GY +     +    F  M  
Sbjct: 380 MYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQK 439

Query: 118 --KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
                + +   + + GCA               M  GL+ +A        +V   + D+ 
Sbjct: 440 CGIWPDNIGLASAISGCA-----------GINAMRQGLQIHA------RIYVSGYSGDVS 482

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            WNA++  Y   G + +A   F  +  ++  TWN ++  +A++G    A+K+   M QS 
Sbjct: 483 IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG 542

Query: 236 FMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              N  T  S L++   + E       HA  I+ G   ET +       Y     G    
Sbjct: 543 VKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY-----GKCGS 597

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              A++ F  +  ++ VSW  +I + S HG G +   LF +M K G KP+++TF+GVL+ 
Sbjct: 598 FEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLVE+G   F  MS  YG +PR +HY+C+ DI  RAGQ+  A + + +MP    D 
Sbjct: 658 CSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI-AADA 716

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           +V   LL AC++H ++ + ++  + L+EL+P  S +YVL +N +A   +W    QVRK M
Sbjct: 717 MVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMM 776

Query: 473 -ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
            +R V+K    S IEVK   H       L P+ E  Y  L  ++
Sbjct: 777 RDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVIN 820



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 181/424 (42%), Gaps = 43/424 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE----S 62
            G V  A ++F+E+S  D VS  +M++ + +N    +A  L+R M  +   +V      S
Sbjct: 90  NGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA--GVVPTPYVLS 147

Query: 63  AMIDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +++    KA    + R +  + Y+      ++   ++I+ Y +        R+F  MP  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-- 205

Query: 119 LKNVVSWTTVVLG---CAH-------------NGLIAKLEVI-SWTTMCTGL-ERNAMTK 160
            ++ V++ T++ G   C H             +GL      I S    C  L +    T+
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           L    F    + D +   +++  YV  G++  A  +FN   + NV  WN M+  + +   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
              + +L   M  +   PN+ T   IL +C    E  L    H+L+++ GFE +  ++  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y  + W     +  AR   E L+ KDVVSWT+MI  Y  H         F  M K 
Sbjct: 386 LIDMYSKYGW-----LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQV 395
           G  PD I     +S C+    + +G     + +R Y  G+      ++ L ++  R G++
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQG---LQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 396 KEAM 399
           +EA 
Sbjct: 498 REAF 501



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 28/354 (7%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V  AR+VF+E+   +  SW +++SGY +    +E   L+ +M    +  V
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH---RAGV 139

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAWNAMIT 182
             T  VL              S  + CT  E  A  +L   + +      +I   NA+IT
Sbjct: 140 VPTPYVLS-------------SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+   A  +F  MP R+  T+N +I  +A+ G    A+++   M  S   P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 CTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            +S+L +C     + +    H+   + G   +  +       YV        DV +A + 
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-----DVETALVI 301

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F   +  +VV W  M++A+       + F LF +M  +G +P++ T+  +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           + G +  +L S   GF+        L D+  + G +++A RV+  +   E+D V
Sbjct: 362 DLGEQIHSL-SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK--EKDVV 412



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  N +I  Y   G +  A  +F  +  R+  +W AM+  YA+NG    A+ L   M ++
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +P     +S+L+SC   E   +  L HA   + GF  E  +       Y        L
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--------L 189

Query: 292 DVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              S RLA   F  +  +D V++  +I  ++  GHG     +F  M  SG  PD +T   
Sbjct: 190 RCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISS 249

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L+ C+  G ++KG +  + + +A G          L D+  + G V+ A+ + +     
Sbjct: 250 LLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVIFNS---S 305

Query: 409 ERDHVVLGALL 419
           +R +VVL  L+
Sbjct: 306 DRTNVVLWNLM 316


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 249/488 (51%), Gaps = 31/488 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y   G +D AR+V D +   N 
Sbjct: 287 SLITLYLRMGDAAAARRVFDDM--EVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNE 344

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI+ + +     E  +L+ +M       N+  +++V+  CA    +     I   
Sbjct: 345 VSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHAN 404

Query: 148 TMCTGLERNAMTK--------------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
            +  G   N                   A+  F  +P K+ V WN++I+ Y   G M +A
Sbjct: 405 ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEA 464

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LFN MP RN  +WN MI  YA N   G A+     M  S  +P E T +S+L +C  +
Sbjct: 465 EGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANL 524

Query: 254 LE---NMLAHALAIRLGFEQETSL-TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
                  + HA  ++LG E    + T  C    ++   G   D++S+R  F ++  K+ +
Sbjct: 525 CSLEMGRMVHAEIVKLGIEDNIFMGTALCD---MYAKSG---DLDSSRRVFYQMPEKNNI 578

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +WTAM+   + +G   +   LF  M+++G  P+E TF+ +L  CSH GLVE+    F  M
Sbjct: 579 TWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM 638

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            +A+G  P+++HY+C+ D+L RAG + EA  ++ K+   E D     +LL AC  + +  
Sbjct: 639 -QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKV-SSELDTSSWSSLLSACSTYRNKE 696

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVK 488
           + +   ++L EL+  ++  YVL +N++A+ G+W + A+ R  M+   +KK A  S ++++
Sbjct: 697 IGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLR 756

Query: 489 GKDHTLLA 496
           G+ H   +
Sbjct: 757 GQYHAFFS 764



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 203/456 (44%), Gaps = 51/456 (11%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M++  ++  D+  A  LF  MPE  +++V+ + M+D  +K G V +A ++++     +V 
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPE--KSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA 212

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNG-LIAKLEVISWT 147
            +T++ISG+ +     +   +F +M       NVV+   V+  C   G     + V+   
Sbjct: 213 FFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLA 272

Query: 148 TMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             C   E+     N++  L         AR  F  M  +D+V+W A++  Y D G++  A
Sbjct: 273 VKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGA 332

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             + + MP RN  +W  +I R+ + G    A+KL + M      PN +  +S+L++C  +
Sbjct: 333 RRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATL 392

Query: 254 LE---NMLAHALAIRLG-----FEQETSLTYKCTC----------------HYVFWD--- 286
            +       HA A+++G     F   + +   C C                + V W+   
Sbjct: 393 QDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLI 452

Query: 287 --WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
             + +   +  A   F ++ A++ VSW  MI  Y+ +         F  ML SG  P EI
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T   VL  C++   +E GR     + +  G +      + L D+  ++G +  + RV  +
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVK-LGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQ 571

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           MP  E++++   A++     +G    +  + E +IE
Sbjct: 572 MP--EKNNITWTAMVQGLAENGFAEESISLFEDMIE 605



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 27/236 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIV 59
           S +   GK+ EA  LF++M   + VS  +MI+ +  N     A   F AM  S      +
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 60  AESAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S+++        ++  R V  EI     E N++  T+L   Y K+  +D  RR+F +M
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQM 572

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------------- 161
           P   KN ++WT +V G A NG   +   +    +  G+  N  T L              
Sbjct: 573 P--EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQ 630

Query: 162 AREYFVQMPNKDIVAWNAMITAYVD----AGNMAQASELF-NLMPQRNVWTWNAMI 212
           A  YF  M    I   +   T  VD    AG + +A EL   +  + +  +W++++
Sbjct: 631 AIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLL 686



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           +ER     V  +TAMI  +  +      F +F +ML    +P+ +T + V+  C  AG  
Sbjct: 203 YERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEF 262

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           +       L  +   F+   E ++ L  +  R G    A RV   M    RD V   ALL
Sbjct: 263 DLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDM--EVRDVVSWTALL 320

Query: 420 GACRLHGDVRMADYIGERLIELQPS 444
                 GD+  A     R+++  P+
Sbjct: 321 DVYADLGDLDGA----RRVLDAMPA 341


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/515 (30%), Positives = 252/515 (48%), Gaps = 51/515 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G V  A ++FD     D VS  +++  ++R+ D+ +A  +F  MPE  R+  A SA
Sbjct: 151 YSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPE--RSAAAVSA 208

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLK 118
           M+  + + G V+EAR VFD     + ++WT+++S + +     E   +F  M     P+ 
Sbjct: 209 MVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVD 268

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------ARE 164
              +VS   VV  CA +G+I   EV     +  GL      +N +  +         AR 
Sbjct: 269 EAVMVS---VVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARR 325

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F    + D  +WN+MI+ Y+  G +  A  LF++MP ++  +W+AMI     N     A
Sbjct: 326 LFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEA 385

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHA--------LAIRLGFEQETS 273
           + + + M      P++ T  S++++C  +    +  L H         + I LG      
Sbjct: 386 LNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLG-TSLID 444

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +  KC C            + +A   F+ LE K    W A+I+  + +G   +   +F+ 
Sbjct: 445 MYMKCGC------------MEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSE 492

Query: 334 MLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
           M  +GT  P+EITF GVLS C H GLVE+GR+ F LM   Y   P   HY C+ D+L RA
Sbjct: 493 MEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRA 552

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G V+EA  ++  M P   D    GALLGAC  HGD  + + +G++L++L P   G   + 
Sbjct: 553 GYVREAEDMIQSM-PMSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTML 611

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           +N++A+ G W     +R  M ++ V KVA  S +E
Sbjct: 612 SNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 177/425 (41%), Gaps = 58/425 (13%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN----IVAESAMI 65
           +  + +LF  +  P+  +C +++   LR         L+ +MP +       ++A +   
Sbjct: 59  LHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAAACAA 118

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
            G V+ G    +  V    +  N+Y   +L+  Y     V   RR+FD  P+       W
Sbjct: 119 RGDVREGLQVHSHSV-KHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPV-------W 170

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
                           + +SW T+     R+   + A + F +MP +   A +AM+  + 
Sbjct: 171 ----------------DAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFA 214

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G + +A  +F+    R+ +TW AM+  + RN     A+ + + M +  +  +E    S
Sbjct: 215 RRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVS 274

Query: 246 ILTSC--EGMLEN-MLAHALAIRLGFE-----QETSLTYKCTCHYV-----FWDWGFQLD 292
           ++ +C   G+++N  + H L +R G       Q   +    +C  V      +D G  LD
Sbjct: 275 VVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLD 334

Query: 293 ----------------VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                           V  A+  F+ +  KD VSW+AMI    ++    +   +F  M  
Sbjct: 335 HFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRA 394

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
              KPD++T V V+S CS+   +E+G+     + R Y +       + L D+  + G ++
Sbjct: 395 HEIKPDDVTLVSVISACSNLSALEQGKLVHEYI-RKYQYNITIVLGTSLIDMYMKCGCME 453

Query: 397 EAMRV 401
            A+ V
Sbjct: 454 AALEV 458


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 251/536 (46%), Gaps = 85/536 (15%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE-- 86
           +SMI+  ++   + +A+ +F  MP   +++V  +++I GYV+AG  D A ++F E++   
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMP--NKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 87  ------------------------------------GN-VYSWTSLISGYFKARQVDEGR 109
                                               GN +   TS +  Y K   ++  R
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTG 152
            +F +MP +  N+VSW  ++ GC  NGL+ +                   ++S    C+ 
Sbjct: 287 WVFYKMPTR--NLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
               A  K+     ++    +++   A++  Y   G++ QA+ +FN M  RNV TW AM+
Sbjct: 345 TASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFE 269
              A+NG    A++L   M +     N  T  S++ SC   G L+   + H    RLGF 
Sbjct: 405 VGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFA 464

Query: 270 QE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNH 321
            +         +  KC              +N A   F     +KDVV W +MI  Y  H
Sbjct: 465 FDIVNMTALVDMYAKCG------------KINLAERIFSHGSISKDVVLWNSMITGYGMH 512

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           GHG+Q   ++ +M++ G KP++ TF+ +LS CSH+ LVE+G   FN M R +  +P  +H
Sbjct: 513 GHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKH 572

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y+CL D+L RAG+ +EA  ++ KM P +    VL ALL  CR H ++ +     ++L+ L
Sbjct: 573 YACLVDLLSRAGRFEEAQALIEKM-PFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLAL 631

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
              + G Y++ +N++A    WD+   +R  M  R +KK   +S +E     HT  A
Sbjct: 632 DAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFA 687



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 222/513 (43%), Gaps = 83/513 (16%)

Query: 1   TSQFGCTGKVKEATKL---------FDEMSQPDPVSCASMITVFL--------------- 36
           T QF  T  VK  + L         FD+  QP  + C +M+  +L               
Sbjct: 62  TDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLM 121

Query: 37  --RNHDLPKAEALF--RAMPES------------------QRNIVAESAMIDGYVKAGRV 74
             RN ++      F  +A   S                  ++N    S+MI   VK G++
Sbjct: 122 RSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKI 181

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
            EA++VFD +   +V  W S+I GY +A   D   +LF  M                   
Sbjct: 182 GEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEM------------------- 222

Query: 135 NGLIAKLEVISWTTM---CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNM 190
           +G   K   I+ T++   C G+    + K    Y + +    DI+   + +  Y   G++
Sbjct: 223 HGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDI 282

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A  +F  MP RN+ +WNAMI    RNG  G +  L + + +S    + TT  S+L  C
Sbjct: 283 ESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGC 342

Query: 251 E---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
                +    + H  AIR     E++L        ++   G    +  A   F R++ ++
Sbjct: 343 SQTASLATGKILHGCAIR---SFESNLILSTAIVDLYSKCG---SLKQATFVFNRMKDRN 396

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           V++WTAM++  + +GH     RLFA+M + G   + +TFV ++  C+H G +++GR    
Sbjct: 397 VITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHG 456

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            + R  GF     + + L D+  + G++  A R+ S      +D V+  +++    +HG 
Sbjct: 457 HLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSH-GSISKDVVLWNSMITGYGMHGH 514

Query: 428 VRMADYIGERLIE--LQPS-SSGAYVLSANVHA 457
              A  I  ++IE  L+P+ ++   +LSA  H+
Sbjct: 515 GYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHS 547


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 246/485 (50%), Gaps = 41/485 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y + G ++ AR+V DE+ E N 
Sbjct: 286 SLITLYLRKGDADAARRMFDEM--EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------- 134
            SW +L++ + +     E   L+ +M       N+  +++V+  CA              
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403

Query: 135 -------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                  N +     +I     C  L    M       F  +P K+IV WN++I+ Y + 
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDAQMI------FYSLPQKNIVCWNSLISGYSNN 457

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             M +A ELF  MP RNV +WN++I  YA+N     A+K  + M  S   P E T +S+L
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVL 517

Query: 248 TSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +C  +       + HA  I+LG ++   +    +  Y         D++S++  F  + 
Sbjct: 518 LACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMY-----AKSGDLDSSKRVFYEMP 572

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            ++ V+WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH+GLVE    
Sbjct: 573 KRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMH 632

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F +M +A G  P+A+HY+C+ D+L RAG + EA  ++ K+      +    ALL AC +
Sbjct: 633 YFEMM-QACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN-SWAALLSACNI 690

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFS 483
           + +  M +   +RL EL   ++  YVL +N++A+ G+W + A++R  M+   +KK    S
Sbjct: 691 YRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750

Query: 484 QIEVK 488
            ++++
Sbjct: 751 WVQIR 755



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 195/437 (44%), Gaps = 55/437 (12%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M+   ++  D+  A  LF  MPE  R++V+ + M+D  +K G V +A +++ +    +V 
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPE--RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVP 211

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +T++I+G+       +   +F  M L      N ++  +V+  C   G       I   
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEM-LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 148 TMCTGL------ERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
            M + L       RN++  L         AR  F +M  +D+V+W A++  Y + G++  
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  + + MP+RN  +W  ++ R+ + G    A+ L + M      PN +  +S+L +C  
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390

Query: 253 MLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HYVFWDW 287
            L+++ +    H   +++      F     +   C C                + V W+ 
Sbjct: 391 -LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNS 449

Query: 288 GFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                 N++++      F+++ A++V SW ++I  Y+ +       + F  ML SG  P 
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPG 509

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           EITF  VL  C+    +E G+     + +  G K      + L+D+  ++G +  + RV 
Sbjct: 510 EITFSSVLLACASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVF 568

Query: 403 SKMPPHERDHVVLGALL 419
            +MP  +R+ V   A++
Sbjct: 569 YEMP--KRNDVAWTAMI 583


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 240/497 (48%), Gaps = 73/497 (14%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY-------------FKA 102
           ++I   + +++ Y   G V  +R  FD+I + +VY+W S+IS Y             ++ 
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 108

Query: 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLG----CAHNGLIAKLEVISWTTMCTGLERNAM 158
             V E R  F   P  LK   +  T+V G    C    L  +  V    ++     R   
Sbjct: 109 LLVSEIRPDFYTFPPVLK---ACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGF 165

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA------------------------- 193
           T +AR  F  MP +D+ +WNAMI+  +  GN AQA                         
Sbjct: 166 TGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV 225

Query: 194 --------------SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-FMP 238
                          ++F ++P ++V +WN +I  YA+NG    A+++  +M + +  +P
Sbjct: 226 FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIP 285

Query: 239 NETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVN 294
           N+ T  SIL +      + + M  H   I+     +    +  TC   V+   G  +D  
Sbjct: 286 NQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV---FVATCLIDVYGKCGRLVDAM 342

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S    F ++  +  V+W A+I  +  HGH  +  +LF  ML  G KPD +TFV +LS CS
Sbjct: 343 SL---FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 399

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           H+G VE+G+  F LM + YG KP  +HY C+ D+L RAG ++ A   +  MP  + D  +
Sbjct: 400 HSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL-QPDASI 457

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-KME 473
            GALLGACR+HG++ +  +  +RL E+   + G YVL +N++A  G+W+   +VR    E
Sbjct: 458 WGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARE 517

Query: 474 RRVKKVASFSQIEVKGK 490
           R +KK   +S IEV  K
Sbjct: 518 RGLKKTPGWSTIEVNRK 534


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 248/522 (47%), Gaps = 108/522 (20%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G++ +A+ VFD + + +VYSW +L+S Y K   V+    +FD+MP +  + VS+ T
Sbjct: 68  YAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYR--DSVSYNT 125

Query: 128 VVLGCAHNGLIAK-LEV----------------ISWTTMCTGL----------------- 153
           ++   A NG   K L+V                ++    C+ L                 
Sbjct: 126 LIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVAD 185

Query: 154 ------ERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
                  RNAMT +         AR  F  M +K++V+WN MI+ YV  GN  +   LFN
Sbjct: 186 LGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFN 245

Query: 199 LM-----------------------------------PQRNVWTWNAMIDRYARNGPEGA 223
            M                                   P+++   W  MI  YA+NG E  
Sbjct: 246 EMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREED 305

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYK--- 277
           A  L   M +    P+  T +S+++SC     +    + H   + +G +    ++     
Sbjct: 306 AWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVD 365

Query: 278 --CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
             C C       G  LD   AR+ FE +  ++V++W AMIL Y+ +G   +   L+ RM 
Sbjct: 366 MYCKC-------GVTLD---ARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQ 415

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           +   KPD ITFVGVLS C +A +V++G+K F+ +S  +G  P  +HY+C+  +L R+G V
Sbjct: 416 QENFKPDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSV 474

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            +A+ ++  M PHE ++ +   LL  C   GD++ A+     L EL P ++G Y++ +N+
Sbjct: 475 DKAVDLIQGM-PHEPNYRIWSTLLSVCA-KGDLKNAELAASHLFELDPRNAGPYIMLSNL 532

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +AA G W + A VR  M E+  KK A++S +EV  K H  ++
Sbjct: 533 YAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVS 574



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 39/229 (17%)

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-------------- 217
           KD    N ++  Y   G ++ A  +F+ M +R+V++WN ++  YA+              
Sbjct: 56  KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 218 -----------------NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NM 257
                            NG  G A+K+L  M +  F P + +  + L +C  +L+     
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGK 175

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
             H   +     + T +    T  Y         D++ ARL F+ +  K+VVSW  MI  
Sbjct: 176 QIHGRIVVADLGENTFVRNAMTDMYAKCG-----DIDKARLLFDGMIDKNVVSWNLMISG 230

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           Y   G+  +   LF  M  SG KPD +T   VL+     G V+  R  F
Sbjct: 231 YVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLF 279


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 265/507 (52%), Gaps = 35/507 (6%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRN-HDLPKAEALFRAMPESQRNI 58
           F   G+ KEA  L+ +M +    P   + +S +  + R  + +        +      N 
Sbjct: 99  FSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNC 158

Query: 59  V-AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           V  ++A++D Y K G ++ A+KVFDE+ E NV SW S++SG+ K+  + E +R+FD+  +
Sbjct: 159 VYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQ--I 216

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREYFV 167
             K+V+SW +++ G A  G + +  V+          SW  + +G       K A  +F 
Sbjct: 217 SKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFD 276

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            MP ++ V+W  MI  Y   G++  AS+LF+ + ++++ T+NAMI  +A+N     A+ L
Sbjct: 277 AMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWL 336

Query: 228 LNLMFQ--SRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            + M +  +   P++ T  S++++C  + +   A    +    LG E +  L       Y
Sbjct: 337 FSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLY 396

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V+ A   F  L  KDVV+++AMI     +G      +LF  M+ +   P+
Sbjct: 397 AKCG-----SVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPN 451

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             TF G+L+ C+HAGLV++G + F+ M + +G  P  +HY+ + D+L RAG++++A  ++
Sbjct: 452 LATFTGLLTACNHAGLVKEGYRFFSSM-KDHGLVPSTDHYAIMVDLLGRAGRLQDAYELI 510

Query: 403 SKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
             MP  PH     V GALL AC +H +V + +   +    L+ +++  Y L AN++++ G
Sbjct: 511 KSMPMQPHSG---VWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAG 567

Query: 461 EWDEFAQVRKK-MERRVKKVASFSQIE 486
            WD+  ++RK   E+++ K++  S  E
Sbjct: 568 RWDDVGRLRKLWKEKKLAKLSGCSWTE 594


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 234/486 (48%), Gaps = 58/486 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N +  + +I  Y+K G+  +A KVFD+++  N+YSW +++SGY K+  +   R +FD MP
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 117 LKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLA 162
            +  +VVSW T+V+G A +G +               K    S+  + T   ++   +L 
Sbjct: 141 ER--DVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLN 198

Query: 163 REY-----------------------------------FVQMPNKDIVAWNAMITAYVDA 187
           R+                                    F +M  KDI  W  +I+ Y   
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+M  A +LF  MP++N  +W A+I  Y R G    A+ L   M      P + T +S L
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL 318

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAK 306
             C       L H   I  G+   T++           D +     + ++   F   + K
Sbjct: 319 --CASASIASLRHGKEIH-GYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDK 375

Query: 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            D V W  MI A + HG G +  R+   M+K   +P+  T V +L+ CSH+GLVE+G + 
Sbjct: 376 HDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRW 435

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M+  +G  P  EHY+CL D+L RAG  KE MR + +M P E D  +  A+LG CR+H
Sbjct: 436 FESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEM-PFEPDKHIWNAILGVCRIH 494

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
           G+  +     + LI+L P SS  Y+L ++++A  G+W+   ++R  M +RRV K  + S 
Sbjct: 495 GNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSW 554

Query: 485 IEVKGK 490
           IE++ K
Sbjct: 555 IEIEKK 560



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 59/258 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+++ A + FDEM+  D     ++I+ + +  D+  AE LF  MPE  +N V+ +A+I G
Sbjct: 228 GQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPE--KNPVSWTALIAG 285

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           YV+ G  + A  +F ++    V    ++++S +        +  G+ +   M        
Sbjct: 286 YVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYM-------- 337

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                                    + T +  NA                 +  +++I  
Sbjct: 338 -------------------------IRTNVRPNA-----------------IVISSLIDM 355

Query: 184 YVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           Y  +G++  +  +F +   + +   WN MI   A++G    A+++L+ M + R  PN TT
Sbjct: 356 YSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTT 415

Query: 243 CTSILTSC--EGMLENML 258
              IL +C   G++E  L
Sbjct: 416 LVVILNACSHSGLVEEGL 433


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 230/466 (49%), Gaps = 32/466 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q ++     +ID Y K G +D+A+++ D I E +V SWTS+I+GY +     E    F  
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-NAMTKLAREYFVQMPNKD 173
           M    +    W               + + S  + C G++  +  +++    +V   + D
Sbjct: 437 M----QACGIWPD------------NIGLASAISACAGIKAVHQGSQIHARVYVSGYSAD 480

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +  WN ++  Y   G   +A   F  +  +   TWN +I  +A++G    A+K+   M Q
Sbjct: 481 VSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQ 540

Query: 234 SRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           +    N  T  S +++   +    +    HA  I+ G+  ET ++      Y     G  
Sbjct: 541 AGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLY-----GKC 595

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +  A++ F  +  ++ VSW  +I   S HG G +   LF +M + G KP ++TFVGVL
Sbjct: 596 GSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVL 655

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CSH GLVE+G   F  MS  +G  PR +HY+C+ DIL RAGQ+  A R V +MP    
Sbjct: 656 TACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPI-PA 714

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D +V   LL AC++H ++ + ++  + L+EL+P  S +YVL +N +A  G+W    Q+RK
Sbjct: 715 DSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRK 774

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
            M +R V+K    S IEVK   H       L P+ +  Y  L  ++
Sbjct: 775 IMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLN 820



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 183/423 (43%), Gaps = 43/423 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE----SA 63
           G V+ A ++F+E+S  D VS  ++++ + +N    +A  L+R M  S   +V      S+
Sbjct: 91  GFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRS--GVVPTPYVLSS 148

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWT----SLISGYFKARQVDEGRRLFDRMPLKL 119
           ++    K       R +  ++Y+   +S T    +LIS Y + R      R+F  M    
Sbjct: 149 ILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDM--LY 206

Query: 120 KNVVSWTTVVLG---CAHN----GLIAKLE----------VISWTTMCTGLERNAMTKLA 162
            + V++ T++ G   C H     G+  +++          + S    C+ +      K  
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266

Query: 163 REYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
             Y ++   + D +   +++  YV +G++ +A ++F+   + NV  WN M+  Y +    
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL 326

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKC 278
             +  +   M  +   PN+ T   +L +C    E  L    H+L I+ GF+ +  ++   
Sbjct: 327 AKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVL 386

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y  + W     ++ A+   + +E KDVVSWT+MI  Y  H    +    F  M   G
Sbjct: 387 IDMYSKYGW-----LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQVK 396
             PD I     +S C+    V +G +   + +R Y  G+      ++ L  +  R G  K
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQ---IHARVYVSGYSADVSIWNGLVYLYARCGISK 498

Query: 397 EAM 399
           EA 
Sbjct: 499 EAF 501



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 34/357 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V  AR+VF+E+   +  SW +++SGY +    +E  RL+  M        
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREM-------- 134

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK----DIVAWNA 179
                      +G++    V+S  ++ +   +  + +L R   VQ+  +    +    NA
Sbjct: 135 ---------HRSGVVPTPYVLS--SILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I+ Y+   +   A  +F  M   +  T+N +I  +A+ G    A+ + + M  S   P+
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243

Query: 240 ETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L +C     + +    H+  ++ G   +  +       YV        D+  A
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYV-----KSGDIEEA 298

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F+  +  +VV W  M++AY       + F +F RML +G +P++ T+  +L  C+H 
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           G +  G +  +L  +  GF+        L D+  + G + +A R++  +   E+D V
Sbjct: 359 GEIGLGEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI--EEKDVV 412



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I  Y   G + +A  +F  +  R+  +W A++  YA+NG    A++L   M +S  +
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 238 PNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P     +SIL++C   E      L H    + GF  ET +       Y        L   
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLY--------LRCR 192

Query: 295 SARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           S RLA   F  +   D V++  +I  ++  GHG +   +F  M  SG  PD +T   +L+
Sbjct: 193 SFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLA 252

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CS  G + KG++  + + +A G          L D+  ++G ++EA+++       +R 
Sbjct: 253 ACSAVGDLRKGKQLHSYLLKA-GMSLDYIMEGSLLDLYVKSGDIEEALQIFDS---GDRT 308

Query: 412 HVVLGALL 419
           +VVL  L+
Sbjct: 309 NVVLWNLM 316


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 248/508 (48%), Gaps = 37/508 (7%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNI 58
           +G + EA  L  +M     +P  +   S+  V     DL   +A+     R     +  +
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              +A+ID YVK   +  AR+VFD + + ++ SWT++I+ Y     ++EG RLF +M  +
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               N ++  ++V  C   G +   +++   T+     RN  T              +V 
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTL-----RNGFTL------------SLVL 365

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             A I  Y   G++  A  +F+    +++  W+AMI  YA+N     A  +   M     
Sbjct: 366 ATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI 425

Query: 237 MPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            PNE T  S+L  C   G LE     H+   + G + +  L  K +   ++ + G   D+
Sbjct: 426 RPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMIL--KTSFVDMYANCG---DI 480

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++A   F     +D+  W AMI  ++ HGHG     LF  M   G  P++ITF+G L  C
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH+GL+++G++ F+ M   +GF P+ EHY C+ D+L RAG + EA  ++  M P   +  
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSM-PMRPNIA 599

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V G+ L AC+LH ++++ ++  ++ + L+P  SG  VL +N++A+   W + A +R+ M 
Sbjct: 600 VFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMK 659

Query: 473 ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           +  + K    S IEV G  H  +   RE
Sbjct: 660 DEGIVKEPGVSSIEVNGLLHEFIMGDRE 687



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 191/443 (43%), Gaps = 52/443 (11%)

Query: 31  MITVFLRNH---DLPKAEALFRAMPESQRNIVAES-----AMIDGYVKAGRVDEARKVFD 82
           +IT +++N+   D  K  A  R       N V  S      +I  ++    V     V  
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGF--VVK 152

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI---- 138
             + G+V+   +LI  Y +   +   R LFD+  ++ K+VVSW+T++     +GL+    
Sbjct: 153 NGFHGDVFVCNALIMMYSEVGSLALARLLFDK--IENKDVVSWSTMIRSYDRSGLLDEAL 210

Query: 139 -------------AKLEVISWTTMCTGLERNAMTKLAREYFV---QMPNKDIVAWNAMIT 182
                        +++ +IS T +   L    + K    Y +   +     +    A+I 
Sbjct: 211 DLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALID 270

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            YV   N+A A  +F+ + + ++ +W AMI  Y         ++L   M      PNE T
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 243 CTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARL 298
             S++  C   G LE   L HA  +R GF     L         F D +G   DV SAR 
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA------TAFIDMYGKCGDVRSARS 384

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+  ++KD++ W+AMI +Y+ +    + F +F  M   G +P+E T V +L  C+ AG 
Sbjct: 385 VFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGS 444

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           +E G+   + + +  G K      +   D+    G +  A R+ ++    +RD  +  A+
Sbjct: 445 LEMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCGDIDTAHRLFAEAT--DRDISMWNAM 501

Query: 419 LGACRLHGDVRMADYIGERLIEL 441
           +    +HG        GE  +EL
Sbjct: 502 ISGFAMHGH-------GEAALEL 517


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 211/410 (51%), Gaps = 34/410 (8%)

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVS---WTTVVLGCAHNGLIAKLEVISWTTMC 150
           SL+  Y K  ++    ++FD  P +  +  S   W  ++ GC   G + K          
Sbjct: 219 SLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKK---------- 268

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                      A + F  MP K+ V+W+ +I  +   G+M +A ELF+ MP++NV +W  
Sbjct: 269 -----------AVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTT 317

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLG 267
           M+D ++RNG    A+ + + M +    PN  T  S L++C    G+   +  H      G
Sbjct: 318 MVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNG 377

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
                +L       Y         ++ SA   F   E K + +WT MI  ++ HGH  Q 
Sbjct: 378 LHLTEALGTALVDMYAKCG-----NIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQA 432

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
              F +M+ +G KPDE+ F+ +L+ C H+G V+ G   F+ M   Y  +P  +HY+ + D
Sbjct: 433 IACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVD 492

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L R+GQ+KEA+R + +MP +  D V+ GAL  ACR H   +MA +   +L++L+P+ +G
Sbjct: 493 MLGRSGQLKEALRFIERMPMNP-DFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTG 551

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            Y+  +N +AA G+W++  +VR  M+ R V K + +S IEV+G+ H  ++
Sbjct: 552 NYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVS 601



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 36/325 (11%)

Query: 9   KVKEATKLFDEMSQP-DPVSCASMITVFLRN----HDLPKAEALFRAMPESQRNIVAESA 63
           K+  A K+FDE  +  D  S A +  V ++       + KA  LF+AMP+ +   V+ S 
Sbjct: 229 KLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKEN--VSWST 286

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           +IDG+ K G +D A ++FD++ E NV SWT+++ G+ +    ++   +F +M  +    N
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPN 346

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             +  + +  CA    I  LE         GL  +   K    +  +          A++
Sbjct: 347 AFTIVSALSACAK---IGGLEA--------GLRIHKYIKDNGLHLTE------ALGTALV 389

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   GN+  ASE+F    Q+++ TW  MI  +A +G    A+     M  +   P+E 
Sbjct: 390 DMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEV 449

Query: 242 TCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD--WGFQLDVNSAR 297
              ++LT+C   G ++  L    ++RL +  E S+      HY       G    +  A 
Sbjct: 450 VFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMK-----HYTLIVDMLGRSGQLKEAL 504

Query: 298 LAFERLEAK-DVVSWTAMILAYSNH 321
              ER+    D V W A+  A   H
Sbjct: 505 RFIERMPMNPDFVIWGALFCACRAH 529



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 57/236 (24%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-----SQRNI 58
           F   G +  A +LFD+M + + VS  +M+  F RN D  KA ++F  M E     +   I
Sbjct: 291 FAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTI 350

Query: 59  VAE--------------------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
           V+                                 +A++D Y K G ++ A +VF E  +
Sbjct: 351 VSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQ 410

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLI----- 138
            ++ +WT +I G+      ++    F +M    +K   VV +  ++  C H+G +     
Sbjct: 411 KSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVV-FLALLTACMHSGQVDIGLN 469

Query: 139 ----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITA 183
                      +  +  +T +   L R+   K A  +  +MP N D V W A+  A
Sbjct: 470 FFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCA 525



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 98/271 (36%), Gaps = 66/271 (24%)

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE 255
           +FN    +N++T+NA+I     N     A+    LM +S   P+  T   +L S  G+  
Sbjct: 135 VFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFS 194

Query: 256 N---MLAHALAIRLGFEQETSLTYKCTCHY-----------VFWDWGFQLDVNSARL--- 298
               M  H + +R G E ++ +       Y           VF +   + D  S+ L   
Sbjct: 195 TELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWN 254

Query: 299 -----------------AFERLEAKDVVSW------------------------------ 311
                             F+ +  K+ VSW                              
Sbjct: 255 VLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVS 314

Query: 312 -TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
            T M+  +S +G   +   +F++ML+ G +P+  T V  LS C+  G +E G +    + 
Sbjct: 315 WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYI- 373

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           +  G        + L D+  + G ++ A  V
Sbjct: 374 KDNGLHLTEALGTALVDMYAKCGNIESASEV 404



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           +P  N       I + + N P+ +    L+ +F     P E    S++   + +L+    
Sbjct: 45  IPSPNPPEITTTISKTSENKPKSS----LSALFIPPTTPTEAHFISLIHGSKTILQLHQI 100

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           HA  I       + +T +     +      +  +N +   F   + K++ ++ A+I   +
Sbjct: 101 HAQIIIHNLSSSSLITTQ-----LISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLT 155

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            + H F     F  ML+SG KPD +T+  VL   S AGL
Sbjct: 156 TNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLK--SMAGL 192


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 248/485 (51%), Gaps = 41/485 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y + G ++ AR+V DE+ E N 
Sbjct: 286 SLITLYLRKGDADAARRMFDEM--EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------- 134
            SW +L++ + +     E   L+ +M       N+  +++V+  CA              
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403

Query: 135 -------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                  N +     +I     C  L    M       F  +P K+IV WN++I+ Y + 
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDAQMI------FYSLPQKNIVCWNSLISGYSNN 457

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             M +A ELF  MP RNV +WN++I  YA+N     A+K  + M  S   P E T +S+L
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVL 517

Query: 248 TSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +C  +       + HA  I+LG ++  S+        ++   G   D++S++  F  + 
Sbjct: 518 LACASLCSLEMGKMVHAKIIKLGIKE--SIFVGTALSDMYAKSG---DLDSSKRVFYEMP 572

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            ++ V+WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH+GLVE    
Sbjct: 573 KRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMH 632

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F +M +A G  P+A+HY+C+ D+L RAG + EA  ++ K+      +    ALL AC +
Sbjct: 633 YFEMM-QACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN-SWAALLSACNI 690

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFS 483
           + +  M +   +RL EL   ++  YVL +N++A+ G+W + A++R  M+   +KK    S
Sbjct: 691 YRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750

Query: 484 QIEVK 488
            ++++
Sbjct: 751 WVQIR 755



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 195/437 (44%), Gaps = 55/437 (12%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M+   ++  D+  A  LF  MPE  R++V+ + M+D  +K G V +A +++ +    +V 
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPE--RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVP 211

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL---KNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +T++I+G+       +   +F  M L      N ++  +V+  C   G       I   
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEM-LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270

Query: 148 TMCTGL------ERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
            M + L       RN++  L         AR  F +M  +D+V+W A++  Y + G++  
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  + + MP+RN  +W  ++ R+ + G    A+ L + M      PN +  +S+L +C  
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390

Query: 253 MLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HYVFWDW 287
            L+++ +    H   +++      F     +   C C                + V W+ 
Sbjct: 391 -LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNS 449

Query: 288 GFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                 N++++      F+++ A++V SW ++I  Y+ +       + F  ML SG  P 
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPG 509

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           EITF  VL  C+    +E G+     + +  G K      + L+D+  ++G +  + RV 
Sbjct: 510 EITFSSVLLACASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSKRVF 568

Query: 403 SKMPPHERDHVVLGALL 419
            +MP  +R+ V   A++
Sbjct: 569 YEMP--KRNDVAWTAMI 583


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 230/466 (49%), Gaps = 37/466 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A  ++ D Y K G ++ AR VF  I + ++ +W ++I+G+       E    F +M 
Sbjct: 335 DLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM- 393

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK--LAREYFVQMP-NKD 173
                            H GL+   +V   + +C   E   +        Y V+M  N D
Sbjct: 394 ----------------RHTGLVPN-DVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 174 IVAWNAMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           I   N++++ Y    N+  A ++F ++  + ++ +WN ++    +    G  ++L  LMF
Sbjct: 437 IPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMF 496

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            SR  P+  T T++L S   +    +    H   ++ G   + S++      Y       
Sbjct: 497 ASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG--- 553

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  AR  F+ +   D++SW+++I+ Y+  G G + F LF  M   G KP+EITFVG+
Sbjct: 554 --SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGI 611

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH G+VE+G K +  M   Y   P  EH SC+ D+L RAG +  A   + +M P  
Sbjct: 612 LTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQM-PFV 670

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D VV   LL AC++HG++ +     E ++++ PS+S A V+  N+HA+ G W +FA++R
Sbjct: 671 PDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLR 730

Query: 470 KKMER-RVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
             M R  V KV   S IE+K K H  LA     P R   Y +L+E+
Sbjct: 731 SSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEEL 776



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 180/376 (47%), Gaps = 34/376 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +++ ++ ++  Y K G + EAR +FD +   NV SWTS+ISGY +  + D    L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-- 172
           M L+  ++    T        G I K         C+GL+     KLAR+    +     
Sbjct: 190 M-LRSGHIPDHFTF-------GSIVK--------SCSGLDD---FKLARQLHAHVLKSEF 230

Query: 173 --DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM-KLLN 229
             D++A NA+I+ Y     MA A  +F+ +  +++ +W +MI  +++ G E  A+     
Sbjct: 231 GADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFRE 290

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
           ++ QS + PNE    S  ++C  +LE       H L I+ G   +  L   C+   ++  
Sbjct: 291 MLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD--LFAGCSLCDMYAK 348

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            GF   + SAR  F  +E  D+V+W A+I  +++  +  +    F++M  +G  P+++T 
Sbjct: 349 CGF---LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTV 405

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +L  CS   ++  G +  + + +  GF       + L  +  +   + +A++V   + 
Sbjct: 406 LSLLCACSEPVMLNHGIQVHSYIVK-MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI- 463

Query: 407 PHERDHVVLGALLGAC 422
            ++ D V    LL AC
Sbjct: 464 GNKADIVSWNTLLTAC 479



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 40/394 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +G  G +KEA  +FD M   + VS  SMI+ + R  +   A  L+  M  S       
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 57  ---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              +IV   + +D + K  R   A  +  E +  ++ +  +LIS Y K  Q+ +   +F 
Sbjct: 201 TFGSIVKSCSGLDDF-KLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG-----LIAKLEVISWT-------------TMCTGLER 155
           R  + +K+++SW +++ G +  G     L    E++S +             + C+ L  
Sbjct: 259 R--IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
               +      ++     D+ A  ++   Y   G +  A  +F  + + ++  WNA+I  
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-EGMLEN--MLAHALAIRLGFEQE 271
           +A       +    + M  +  +PN+ T  S+L +C E ++ N  +  H+  +++GF  +
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRL 330
             +     C+ +   +    ++N A   FE +  K D+VSW  ++ A        +V RL
Sbjct: 437 IPV-----CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRL 491

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
              M  S  KPD +T   VL         E G +
Sbjct: 492 TKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ 525


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 148/489 (30%), Positives = 257/489 (52%), Gaps = 31/489 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT+ LR  ++  A  +F  M E  +++V+ +A++D YV+   + EAR++FDE+ + N 
Sbjct: 224 SLITLCLRMGEIHLAREVFDRMEE--KDVVSWTAILDLYVEMDELGEARRIFDEMPQRNE 281

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH-NGLIAKLEVISW 146
            SW+++I+ Y ++   +E  RLF RM  +    N+  +++++   A    L A + +   
Sbjct: 282 VSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGH 341

Query: 147 TTMCTGLERNAM--------------TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
            T   G E++                TK  R  F  +  K++V+WNAM+  Y   G+M +
Sbjct: 342 VTK-IGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEE 400

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A  LFN+MP RN  +W+A+I  +          ++ N M     +PN++T +S+L +C  
Sbjct: 401 AKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACAS 460

Query: 253 ---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
              + +    H   ++LG + +T +    T  Y         D+ S++  F R+  K+ V
Sbjct: 461 TASLDKGKNLHGKIVKLGIQCDTYVGTALTDMY-----AKSGDIESSKKVFNRMPKKNEV 515

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           SWTAMI   +  G   +   LF  M K S   P+E+ F+ VL  CSH+GLV+KG   FN 
Sbjct: 516 SWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNS 575

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M   YG KP+  H++C+ D+L RAG++ EA   +  M P + +     ALL  C+ + + 
Sbjct: 576 MEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSM-PFQPETNAWAALLSGCKTYKNE 634

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEV 487
            +A+ +  +L E+   +   YVL +N++A+ G W +  +VRK M+ + +KK    S +E+
Sbjct: 635 ELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEI 694

Query: 488 KGKDHTLLA 496
           + + H+  +
Sbjct: 695 RDRVHSFYS 703



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 205/430 (47%), Gaps = 85/430 (19%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V  + MI   V+ G +DEARK+FDE+ + N  SWT+LISG+ K  +V E    F+R P
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKL---EV----ISWTTMC------------ 150
            +  NVVSWT  + G   NG       L  KL   EV    +++T++             
Sbjct: 146 FQ--NVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLG 203

Query: 151 ---------TGLE--------------RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                    TG E              R     LARE F +M  KD+V+W A++  YV+ 
Sbjct: 204 MSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEM 263

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             + +A  +F+ MPQRN  +W+AMI RY ++G    +++L   M Q  F PN +  +SIL
Sbjct: 264 DELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSIL 323

Query: 248 T---SCEGMLENMLAHALAIRLGFEQETSLTYK-----CTC----------------HYV 283
           +   S E +   M  H    ++GFE++  ++       C C                + V
Sbjct: 324 SALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMV 383

Query: 284 FWD---WGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            W+    G+ L+  +  A+  F  +  ++ VSW+A+I  + +     ++F +F  M+  G
Sbjct: 384 SWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLG 443

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVK 396
             P++ TF  +L  C+    ++KG+   NL  +      + + Y  + L D+  ++G ++
Sbjct: 444 EIPNKSTFSSLLCACASTASLDKGK---NLHGKIVKLGIQCDTYVGTALTDMYAKSGDIE 500

Query: 397 EAMRVVSKMP 406
            + +V ++MP
Sbjct: 501 SSKKVFNRMP 510



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FER   ++VVSWTA I  Y  +G   +  +LF ++L+S  KP+++TF  V+  C++ G  
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
             G     L+ +  G++      + L  +  R G++  A  V  +M   E+D V   A+L
Sbjct: 201 GLGMSVLGLIVKT-GYEHDLAVSNSLITLCLRMGEIHLAREVFDRM--EEKDVVSWTAIL 257


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 250/499 (50%), Gaps = 49/499 (9%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAG 72
           K+ ++  Q D  + +S++    R   L + E +   + +S  + N   E+ +I  Y   G
Sbjct: 111 KMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCG 170

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVV 129
           ++  AR VFD + E ++ +W S++SGY K    DE  +LF R  L+L+   + V+  +V+
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLF-RKILELRIEFDDVTMISVL 229

Query: 130 LGCAHNGLIAKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
           + C   G +A LE+   I    +  GL RN                      ++I  Y  
Sbjct: 230 MAC---GRLANLEIGELIGEYIVSKGLRRNNTLT-----------------TSLIDMYAK 269

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G +  A +LF+ M +R+V  W+AMI  YA+      A+ L + M +    PNE T  S+
Sbjct: 270 CGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSV 329

Query: 247 LTSC-------EGMLENMLAHALAIRLGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARL 298
           L SC        G   +       ++L     T L  +   C Y+          + +  
Sbjct: 330 LYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYI----------DRSVE 379

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+ +  K+V +WTA+I   +N+G G      F+ ML++  KP+++TF+GVLS CSHA L
Sbjct: 380 VFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACL 439

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V++GR  FN M R +  +PR EHY C+ DIL RAG ++EA + +  M P   + VV   L
Sbjct: 440 VDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM-PFPPNAVVWRTL 498

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVK 477
           L +CR H ++ MA+   E +  L+P+ SG Y+L +N +A  G  ++  +VR  + E+ +K
Sbjct: 499 LASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIK 558

Query: 478 KVASFSQIEVKGKDHTLLA 496
           K+   S IE+ G  H   +
Sbjct: 559 KIPGCSLIELDGVVHEFFS 577



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 177/446 (39%), Gaps = 95/446 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE---------- 53
           +   G++  A  +FD M +   V+  SM++ + +N    +   LFR + E          
Sbjct: 166 YANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTM 225

Query: 54  ---------------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       +RN    +++ID Y K G+VD ARK+FDE+ +
Sbjct: 226 ISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDK 285

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +V +W+++ISGY +A +  E   LF  M       N V+  +V+  CA   ++   E  
Sbjct: 286 RDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCA---MLGAYETG 342

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
            W       ++  +T              +     +I  Y   G + ++ E+F  M  +N
Sbjct: 343 KWVHFYIKKKKMKLT--------------VTLGTQLIDFYAKCGYIDRSVEVFKEMSFKN 388

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           V+TW A+I   A NG    A++  + M ++   PN+ T   +L++C              
Sbjct: 389 VFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACS------------- 435

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
                           H    D G  L  NS R  F+ +E + +  +  M+      G  
Sbjct: 436 ----------------HACLVDQGRHL-FNSMRRDFD-IEPR-IEHYGCMVDILGRAGFL 476

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYS 383
            + ++    M      P+ + +  +L+ C     +E   K+   ++R    +P  +  Y 
Sbjct: 477 EEAYQFIDNM---PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITR---LEPAHSGDYI 530

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHE 409
            L++     G+V++A+RV S +   E
Sbjct: 531 LLSNTYALVGRVEDAIRVRSLIKEKE 556


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 235/470 (50%), Gaps = 28/470 (5%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +++ Y + G   +A+KVF+ I   ++ SWT LIS Y    Q  +   +F  +        
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353

Query: 124 SWTTV--VLGCAH----------NGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
           S+  V  V  C H          +G++ + E+ S   +   L     R+   ++A   F 
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
            M  KD+ +W +++  ++   ++  A  +F+ MP RN  +W AMI  Y +       ++L
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 473

Query: 228 LNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
              M  + +  P   T  ++L+ C  +    L  ++    G+  +T+L    T +    D
Sbjct: 474 FQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVH---GYVNKTNLDLDVTVNNALMD 530

Query: 287 -WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
            +     +  A   F+ +  +DV SWT MI   + HG G      F+ M KSG  P+E+T
Sbjct: 531 MYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVT 590

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + VLS CSHAGLV +GR  F  M + +G KP+ +HY C+ D+L RAG ++EA  ++  M
Sbjct: 591 LLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHM 650

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P  + D V+  +LL AC +HG++ +A+  G+ +IEL+P   G Y+L  N++ +   W++ 
Sbjct: 651 PI-KPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDA 709

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAP-----MREMGYVVLKEV 509
            + RK M +RRVKK    S +EV G  H  LA      +R   Y VL+ +
Sbjct: 710 LKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAI 759



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 58/299 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G   +A K+F+ +  PD VS   +I+++L      KA ++F  +      P+S       
Sbjct: 302 GSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAV 361

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     + +  +A+ID Y ++G ++ A  VF  +   +V 
Sbjct: 362 SACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVS 421

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL-IAKLEVI----- 144
           SWTSL++G+ K   ++  RR+FD MP  ++N VSWT ++ G     + I  LE+      
Sbjct: 422 SWTSLLNGFIKCNDIEAARRIFDEMP--MRNSVSWTAMITGYVQGEVPIPGLELFQEMRA 479

Query: 145 ---SWTTMCT------GLERNAMTKLAREY--FVQMPN--KDIVAWNAMITAYVDAGNMA 191
               W T+ T      G        L      +V   N   D+   NA++  Y  +G + 
Sbjct: 480 EGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALV 539

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A ++F  MP+R+V++W  MI   A +G    A++  + M +S   PNE T  S+L++C
Sbjct: 540 LALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSAC 598


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 156/506 (30%), Positives = 254/506 (50%), Gaps = 36/506 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAM---PESQRNIVAESA 63
           G + EA  +FD+M   D VS  ++I    ++ D P +   +F  M    + Q + ++  +
Sbjct: 180 GSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCS 239

Query: 64  MIDGYVKAGRVDEARKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +I      G+++  R+V         EG V     L++ Y+K       RRLFD M    
Sbjct: 240 VIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAM--SE 297

Query: 120 KNVVSWTTVVLGCAHNGLI---------AKLEVISWTTMCTGLERNAMTKLAREYFVQ-- 168
           ++VVSWTT +     + L               +++  + + L  +   + A+       
Sbjct: 298 RDVVSWTTAISMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACL 357

Query: 169 --MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
               + +  A N++IT Y  A  M  A  +F+LMP+R +  WNA+I  YA+NG    A++
Sbjct: 358 KAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALE 417

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEG-----MLENMLAHALAIRLGFEQETSLTYKCTCH 281
           L + M +    PNETT  S+L++        M    + H+ A+ +GF     +       
Sbjct: 418 LFSSMARC-LTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDM 476

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y       + ++  +R AF   E + +++WTA+I A + HG    V  LF  M +SG  P
Sbjct: 477 YAK-----RGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAP 531

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D +  + VL+ C + G+V+ GR  F+ M+   G +   EHYSC+ D+L RAG++ EA  +
Sbjct: 532 DGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEEL 591

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP        L +LLGACR+HGD  + + I   L E +P+ SGAYVL +N++A  G+
Sbjct: 592 MMRMPAGPSVS-ALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGD 650

Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIE 486
           WD  A+VR+KM +R VKK   FS ++
Sbjct: 651 WDGVAKVRRKMRDRGVKKEIGFSWVD 676



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 129/309 (41%), Gaps = 56/309 (18%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G    A  VF      +V S+ +++S +    +  +      R      + V+ T 
Sbjct: 77  YAKTGSFPSAVGVFAAARARDVSSYNTILSAFPDPAEALDFASWMLRSGAVRPDAVTCTV 136

Query: 128 VVLGCAHNG---LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            +   A  G   L+ +L  ++W +            LA + FV          NA++TAY
Sbjct: 137 ALSLAAGRGEGFLVRQLHALAWRS-----------GLAADVFVG---------NALVTAY 176

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETT 242
              G++ +A  +F+ MP R++ +WNA+I   A++G  P       L ++      P+  +
Sbjct: 177 SRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRIS 236

Query: 243 CTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLT-------YKCTCHYVFWDWGFQLD 292
             S++ +C  EG LE     H  A++LG E   S+        YKC              
Sbjct: 237 VCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAP----------- 285

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS- 351
             SAR  F+ +  +DVVSWT  I        G     LF  M + G  P+E+TFV ++S 
Sbjct: 286 -GSARRLFDAMSERDVVSWTTAI-----SMDGEDALTLFNGMRRDGVPPNEVTFVALMSA 339

Query: 352 ---DCSHAG 357
              DC   G
Sbjct: 340 LPADCPARG 348



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 165/384 (42%), Gaps = 50/384 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLFDRM 115
           ++   +A++  Y + G + EAR VFD++   ++ SW +LI G  +      E   +F RM
Sbjct: 165 DVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRM 224

Query: 116 PLKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM-TKLAREYFVQMP 170
            L+  +V    +S  +V+  C   G   KLE+        G + +    KL  E +V + 
Sbjct: 225 -LRDGDVQPDRISVCSVIPACGGEG---KLEL--------GRQVHGFAVKLGVEGYVSI- 271

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                  N ++  Y   G    A  LF+ M +R+V +W   I     +     A+ L N 
Sbjct: 272 ------GNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMDGED-----ALTLFNG 320

Query: 231 MFQSRFMPNETTCTSILTS----CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           M +    PNE T  +++++    C      M+ HA  ++     E + +      Y    
Sbjct: 321 MRRDGVPPNEVTFVALMSALPADCPARGAQMV-HAACLKAAVSGEAAASNSLITMYA--- 376

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 ++ AR+ F+ +  +++++W A+I  Y+ +G       LF+ M +  T P+E TF
Sbjct: 377 --KARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARCLT-PNETTF 433

Query: 347 VGVLSDCSHAGLVEKGRKTFNLM--SRAY--GFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             VLS  +    VE     +  M  SRA   GF         L D+  + G ++E+ +  
Sbjct: 434 ASVLSAVT---AVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAF 490

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
            +    +R  +   A++ A   HG
Sbjct: 491 HET--EQRSLIAWTAIISANARHG 512


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 246/485 (50%), Gaps = 41/485 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y + G ++ AR+V DE+ E N 
Sbjct: 286 SLITLYLRKGDADAARRMFDEM--EVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------- 134
            SW +L++ + +     E   L+ +M       N+  +++V+  CA              
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQ 403

Query: 135 -------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                  N +     +I     C  L    M       F  +P K+IV WN++I+ Y + 
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDAQMI------FYSLPQKNIVCWNSLISGYSNN 457

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
             M +A ELF  MP RNV +WN++I  YA+N     A+K  + M  S   P E T +S+L
Sbjct: 458 SKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVL 517

Query: 248 TSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +C  +       + HA  I+LG ++   +    +  Y         D++S++  F  + 
Sbjct: 518 LACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMY-----AKSGDLDSSKRVFYEMP 572

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            ++ V+WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH+GLVE    
Sbjct: 573 KRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMH 632

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            F +M +A G  P+A+HY+C+ D+L RAG + EA  ++ K+      +    ALL AC +
Sbjct: 633 YFEMM-QACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN-SWAALLSACNI 690

Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFS 483
           + +  M +   +RL EL   ++  YVL +N++A+ G+W + A++R  M+   +KK    S
Sbjct: 691 YRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCS 750

Query: 484 QIEVK 488
            ++++
Sbjct: 751 WVQIR 755



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 195/440 (44%), Gaps = 61/440 (13%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M+   ++  D+  A  LF  MPE  R++V+ + M+D  +K G V +A +++ +    +V 
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPE--RSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVP 211

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +T++I+G+       +   +F  M      P    N ++  +V+  C   G       I
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSP----NEITLVSVIKACIGAGEFDLAMSI 267

Query: 145 SWTTMCTGL------ERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGN 189
               M + L       RN++  L         AR  F +M  +D+V+W A++  Y + G+
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A  + + MP+RN  +W  ++ R+ + G    A+ L + M      PN +  +S+L +
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 250 CEGMLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HYVF 284
           C   L+++ +    H   +++      F     +   C C                + V 
Sbjct: 388 CAS-LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVC 446

Query: 285 WDWGFQLDVNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           W+       N++++      F+++ A++V SW ++I  Y+ +       + F  ML SG 
Sbjct: 447 WNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            P EITF  VL  C+    +E G+     + +  G K      + L+D+  ++G +  + 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIK-LGIKESIFVGTALSDMYAKSGDLDSSK 565

Query: 400 RVVSKMPPHERDHVVLGALL 419
           RV  +MP  +R+ V   A++
Sbjct: 566 RVFYEMP--KRNDVAWTAMI 583


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 146/448 (32%), Positives = 226/448 (50%), Gaps = 31/448 (6%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           + Q N+   +A++D Y K G VD ARKVFD + + N  SW ++I GY +     E   LF
Sbjct: 359 DEQVNV--STAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALF 416

Query: 113 DRMPLKLKNV--VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            RM  +  +V  VS    +  C   G + +   +    +  GLE N              
Sbjct: 417 KRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESN-------------- 462

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
              +   NA+IT Y        A+++F+ +  +   +WNAMI    +NG    A++L + 
Sbjct: 463 ---VNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR 519

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M      P+  T  SI+ +   + + + A   H  +IRL  +Q+  +       Y     
Sbjct: 520 MQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG- 578

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                V+ AR  F     + V++W AMI  Y +HG G     LF  M  SG  P+E TF+
Sbjct: 579 ----RVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFL 634

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VLS CSHAGLV++G++ F+ M   YG +P  EHY  + D+L RAG++ EA   + KM P
Sbjct: 635 SVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKM-P 693

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            E    V GA+LGAC+LH +V +A+   +R+ EL+P     +VL AN++A    W + A+
Sbjct: 694 MEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVAR 753

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTL 494
           VR  ME++ ++K   +S +++K + HT 
Sbjct: 754 VRTAMEKKGLQKTPGWSIVQLKNEIHTF 781



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G V  A K+FD M   + VS  +MI  +  N D  +A ALF+ M     ++  V+  A +
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +DE R+V + +     E NV    +LI+ Y K ++ D   ++FD +  K + 
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR- 494

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLARE 164
            VSW  ++LGC  NG       L ++++          ++S       +      +    
Sbjct: 495 -VSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHG 553

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y +++  ++D+    A+I  Y   G ++ A  LFN    R+V TWNAMI  Y  +G    
Sbjct: 554 YSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKV 613

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A++L   M  S  +PNETT  S+L++C
Sbjct: 614 AVELFEEMKSSGKVPNETTFLSVLSAC 640



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 125/303 (41%), Gaps = 38/303 (12%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL- 117
           +A +A+ + Y K  R  +AR+VFD +   +  +W +L++GY +    +    +  RM   
Sbjct: 261 LAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEE 320

Query: 118 --KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
             +  + V+  +V+  CA                  G  R       R  F +  N    
Sbjct: 321 DGERPDAVTLVSVLPACA-------------DAQALGACREVHAFAVRGGFDEQVNVS-- 365

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
              A++  Y   G +  A ++F+ M  RN  +WNAMI  YA NG    A+ L   M    
Sbjct: 366 --TAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEG 423

Query: 236 FMPNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDW 287
               + +  + L +C   G L E    H L +R+G E   +     +T  C C     D 
Sbjct: 424 VDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRT--DL 481

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
             Q+        F+ L  K  VSW AMIL  + +G      RLF+RM     KPD  T V
Sbjct: 482 AAQV--------FDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLV 533

Query: 348 GVL 350
            ++
Sbjct: 534 SII 536



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 19/210 (9%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-PEGAAMKLLN 229
           + + +A  A+   Y        A  +F+ MP R+   WNA++  YARNG  E A   ++ 
Sbjct: 257 SPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVR 316

Query: 230 LMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS-----LTYKCTCH 281
           +  +    P+  T  S+L +C   + +      HA A+R GF+++ +     L   C C 
Sbjct: 317 MQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG 376

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      V+SAR  F+ ++ ++ VSW AMI  Y+ +G   +   LF RM+  G   
Sbjct: 377 A----------VDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDV 426

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
            +++ +  L  C   G +++GR+   L+ R
Sbjct: 427 TDVSVLAALHACGELGFLDEGRRVHELLVR 456



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           SG+ P   TF  +L  C+    +  GR     ++ A G  P A   + LA++  +  +  
Sbjct: 219 SGSGPVLRTFTSLLKLCAARADLATGRAVHAQLA-ARGLSPEALAATALANMYAKCRRPG 277

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHG--------DVRMADYIGER-----LIELQP 443
           +A RV  +MP   RD V   AL+     +G         VRM +  GER     L+ + P
Sbjct: 278 DARRVFDRMPA--RDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLP 335

Query: 444 SSSGAYVLSA--NVH--AARGEWDEFAQV 468
           + + A  L A   VH  A RG +DE   V
Sbjct: 336 ACADAQALGACREVHAFAVRGGFDEQVNV 364


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 149/482 (30%), Positives = 237/482 (49%), Gaps = 48/482 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           ++++  Y   G +  A ++F  I   +V SW S+IS + +    ++   LF +M  +  +
Sbjct: 165 NSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVM 224

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER----------NAMTKL-------- 161
            N V+   V+  CA       LE   W  +C+ +ER          NAM  +        
Sbjct: 225 PNSVTMVGVLSACAKK---LDLEFGRW--VCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A++ F +MP +D+ +W  M+  Y   G+   A  +FN MP + +  WN +I  Y +NG 
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339

Query: 221 EGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSL 274
              A+ + N +  S+   P+E T  S L++C        A   AI LG     + +   +
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSAC--------AQLGAIDLGGWIHVYIKREGI 391

Query: 275 TYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
              C       D   +   +  A   F  +E +DV  W+AMI     HG G     LF  
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M ++  KP+ +TF  VL  CSHAGLV++GR  F+ M   YG  P  +HY+C+ DIL RAG
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EAM ++++M        V GALLGAC LH +V + +   ++L++L+P + GA VL +
Sbjct: 512 FLEEAMELINEMSTTPSAS-VWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLS 570

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           N++A  G W++ +++RK M +  +KK    S IE  G  H  L      P+    Y  L+
Sbjct: 571 NIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLE 630

Query: 508 EV 509
           E+
Sbjct: 631 EI 632



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 58/303 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMPES--- 54
           +G  G +  A +LF  +S  D VS  SMI+ F + +    A  LF        MP S   
Sbjct: 171 YGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTM 230

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       + ++   +AM+D Y K G VD+A+K+FDE+ E
Sbjct: 231 VGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------- 136
            +V+SWT ++ GY K    D  R +F+ MP  +K + +W  ++     NG          
Sbjct: 291 RDVFSWTIMLDGYAKMGDYDAARLVFNAMP--VKEIAAWNVLISAYEQNGKPKEALAIFN 348

Query: 137 -----LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----A 187
                 IAK + ++  +  +   +     L     V +  + IV    +I++ VD     
Sbjct: 349 ELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKC 408

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++ +A E+F  + +R+V+ W+AMI     +G   AA+ L   M +++  PN  T T++L
Sbjct: 409 GSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVL 468

Query: 248 TSC 250
            +C
Sbjct: 469 CAC 471



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 160/397 (40%), Gaps = 75/397 (18%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQ-----------VDEGRRLFDRM--PLKLK 120
           +D AR +FD+I + N+Y+W +LI  Y  +             +D+   L ++   P  +K
Sbjct: 75  LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                    +G A +G+  KL                               D+   N++
Sbjct: 135 AASELKASRVGTAVHGMAIKLSF---------------------------GMDLYILNSL 167

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR-NGPEGAAMKLLNLMFQSRFMPN 239
           +  Y   G+++ A  LF  +  ++V +WN+MI  +A+ N PE  A++L   M +   MPN
Sbjct: 168 VRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPED-ALELFLKMERENVMPN 226

Query: 240 ETTCTSILTSCEGMLENMLAH---ALAIRLGFEQETSLTYKCTCHYV------------- 283
             T   +L++C   L+        +   R G + + +L       Y              
Sbjct: 227 SVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFD 286

Query: 284 ------FWDWGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
                  + W   L       D ++ARL F  +  K++ +W  +I AY  +G   +   +
Sbjct: 287 EMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAI 346

Query: 331 FARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           F  + L    KPDE+T V  LS C+  G ++ G      + R  G        S L D+ 
Sbjct: 347 FNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMY 405

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + G +++A+ V   +   ERD  V  A++    +HG
Sbjct: 406 AKCGSLEKALEVFYSV--EERDVYVWSAMIAGLGMHG 440


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 156/544 (28%), Positives = 258/544 (47%), Gaps = 67/544 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE------ 61
           G V  A +LFD +  PD     S+I  +  +H   +A  L R M   +R I+        
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGM--IRRGILPNEFTLPF 115

Query: 62  ---------------------------------SAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                            +A++  Y  AG + ++R+ FDE+ + N
Sbjct: 116 LLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRN 175

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SW S+I+GY +A    E   LF+ M  +  L +  +  +++  C+  G +   +++  
Sbjct: 176 VVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHS 235

Query: 147 TTMCTG-----LERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
             +  G     +  NA+  +         A   F  MP K+ V+W +M+ A     ++  
Sbjct: 236 HLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDA 295

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A + F  +P++++ +WNAMI  Y + G    A+ L N M      P+E T  ++L++C G
Sbjct: 296 ARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSAC-G 354

Query: 253 MLENMLAHAL---AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            L ++ +  +    IR  F       +      ++   G    V++A   F  + +K+V+
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLD-MYARCG---QVDTAISLFSEMPSKNVI 410

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW A+I A + HG        F  M+     PDEITFV +LS C+H GL+E G+  F  M
Sbjct: 411 SWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAM 470

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              Y  KP  EHY+C+ D+L R GQ+ +A+ ++  M P   D VV GALLGACR+HG ++
Sbjct: 471 RHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDM-PMRPDVVVWGALLGACRIHGHIQ 529

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +   + ++L+EL+  S G +VL +N+     +W++  ++RK M E  +KK    S IE  
Sbjct: 530 IGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETN 589

Query: 489 GKDH 492
              H
Sbjct: 590 SNIH 593


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 250/495 (50%), Gaps = 36/495 (7%)

Query: 22  QPD--PVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           +PD   V+CA   +     N  L K    F      + +I   +A+I  Y +   +  AR
Sbjct: 104 KPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLAR 163

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAH- 134
            +FD + E ++ SW ++++GY +    ++ + LF  M   L+   N ++  +V+  CA  
Sbjct: 164 IMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQS 223

Query: 135 NGLI-------------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           N LI              K++V  W  +     +      ARE F +M  KD + + +MI
Sbjct: 224 NDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMI 283

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + Y+  G + QA +LF    +  + TWNA+I    +N  +  A+ +   M      PN  
Sbjct: 284 SGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTV 343

Query: 242 TCTSIL------TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           T  SIL      ++ +G  E    H  AIR  +++   +       Y    +     ++ 
Sbjct: 344 TLASILPVFSHFSTLKGGKE---IHGYAIRNTYDRNIYVATAIIDSYAKCGY-----LHG 395

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+L F++++ + +++WT++I AY+ HG       LF  ML +G +PD++TF  VL+ C+H
Sbjct: 396 AQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAH 455

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           +G +++  K FN++   YG +P  EHY+C+  +L RAG++ +A+  +SKMP  E    V 
Sbjct: 456 SGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPL-EPTAKVW 514

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           GALL    + GDV +  Y+ +RL E++P ++G YV+ AN+++  G W +   +R  M E 
Sbjct: 515 GALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEV 574

Query: 475 RVKKVASFSQIEVKG 489
           R+KK+   S IE  G
Sbjct: 575 RLKKIPGNSWIETSG 589



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 182/452 (40%), Gaps = 81/452 (17%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I  Y K+G + +A  VF +I   N++SW +L+  Y       +  +LF  +      
Sbjct: 42  SKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNST 101

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR---EYFVQMPNKDIVAWN 178
            V      + CA       L+ ++     +GL +   + + R   EY       DI   N
Sbjct: 102 DVKPDRFTVTCA-------LKALASLFSNSGLAKEVHSFILRRGLEY-------DIFVVN 147

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFM 237
           A+IT Y     +  A  +F+ MP+R++ +WNAM+  Y++ G      +L  +M  S    
Sbjct: 148 ALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVK 207

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-----D 292
           PN  T  S+L +C     N L   + +   F  E+ +    +     W+    L      
Sbjct: 208 PNALTAVSVLQACAQ--SNDLIFGIEVH-RFVNESQIKMDVS----LWNAVIGLYAKCGS 260

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVFR-------------------- 329
           ++ AR  FE +  KD +++ +MI  Y  HG       +FR                    
Sbjct: 261 LDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQN 320

Query: 330 --------LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
                   +F  M   G +P+ +T   +L   SH   ++ G++        +G+  R  +
Sbjct: 321 NRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI-------HGYAIRNTY 373

Query: 382 ------YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
                  + + D   + G +  A  V  ++    R  +   +++ A  +HGD  +A  + 
Sbjct: 374 DRNIYVATAIIDSYAKCGYLHGAQLVFDQIKG--RSLIAWTSIISAYAVHGDANVALSLF 431

Query: 436 ERLIE--LQPSS-SGAYVLSANVHAARGEWDE 464
             ++   +QP   +   VL+A  H+  GE DE
Sbjct: 432 YEMLTNGIQPDQVTFTSVLAACAHS--GELDE 461



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 117/299 (39%), Gaps = 68/299 (22%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------------ 54
           A  +FD M + D VS  +M+  + +     K + LFR M  S                  
Sbjct: 162 ARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACA 221

Query: 55  QRN----------IVAES----------AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
           Q N           V ES          A+I  Y K G +D AR++F+E+ E +  ++ S
Sbjct: 222 QSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCS 281

Query: 95  LISGYFKARQVDEGRRLF-----DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           +ISGY     V++   LF      R+P       +W  V+ G   N        I     
Sbjct: 282 MISGYMVHGFVNQAMDLFREQERPRLP-------TWNAVISGLVQNNRQEGAVDIFRAMQ 334

Query: 150 CTGLERNAMT-----------------KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
             G   N +T                 K    Y ++   +++I    A+I +Y   G + 
Sbjct: 335 SHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A  +F+ +  R++  W ++I  YA +G    A+ L   M  +   P++ T TS+L +C
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAAC 453



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 64/249 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A +LF+EM + D ++  SMI+ ++ +  + +A  LFR   + +  +   +A+I G
Sbjct: 259 GSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFR--EQERPRLPTWNAVISG 316

Query: 68  YVKAGRVDEARKVFDEI---------------------------------------YEGN 88
            V+  R + A  +F  +                                       Y+ N
Sbjct: 317 LVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRN 376

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +Y  T++I  Y K   +   + +FD+  +K +++++WT+++   A +G            
Sbjct: 377 IYVATAIIDSYAKCGYLHGAQLVFDQ--IKGRSLIAWTSIISAYAVHG------------ 422

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWT 207
                + N    L  E        D V + +++ A   +G + +A ++FN L+P+  +  
Sbjct: 423 -----DANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGI-- 475

Query: 208 WNAMIDRYA 216
              +++ YA
Sbjct: 476 -QPLVEHYA 483


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 252/531 (47%), Gaps = 38/531 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           GK+++A K+FDE+     VS  SMI  +++N    +   LF  M E     N+    +++
Sbjct: 183 GKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLV 242

Query: 66  DGYVKAGRVDEARKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL-- 119
               K G + + + V   +     E N Y  TSL++ Y K   + + R +FD   +    
Sbjct: 243 TACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCG 302

Query: 120 --KNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMTK 160
              ++V WT +++G    G                 L   + + S  + C  LE   M K
Sbjct: 303 GGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGK 362

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           L     V+    D    N+++  Y   G +  A  +F     ++V +WN++I  YA++G 
Sbjct: 363 LLHVLVVKYGLDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGS 422

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
              A+ L N M    F+P+  T   +L++C  +  + +    H  A++ G    +S  Y 
Sbjct: 423 AYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLV--SSSIYV 480

Query: 278 CTCHYVFW-DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
            T    F+   G   D  SAR+ F+ +  K+ V+W AMI      G G     LF  MLK
Sbjct: 481 GTALLNFYAKCG---DATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLK 537

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
               P+E+ F  +L+ CSH+G+VE+G   F+ M +   F P  +HY+C+ D+L RAG ++
Sbjct: 538 EELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQ 597

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA+  + KMP  +    V GA L  C LH +    +    R++EL P  +  YVL +N++
Sbjct: 598 EALDFIDKMPV-QPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLY 656

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMREMGYVVL 506
           A+ G W    +VR+ +++R + KV   S +E+   + T +  ++   Y+ L
Sbjct: 657 ASDGRWGMVKEVREMIKQRGLNKVPGVSLVEMDVNNTTHVNVLQSHLYITL 707



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 39/356 (10%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--RMPLK 118
           ++ +I  Y   G +  AR +F  +     +S+  +I  +F           ++  R  L 
Sbjct: 71  DTTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLG 130

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTT--MCTGLERNAMTKLAREYFVQMPNKDIVA 176
             N +   +++L  A     ++L  I  TT   C  L+ NA               D   
Sbjct: 131 SFNDLVVFSILLKTA-----SQLRDIVLTTKLHCNILKSNA--------------ADSFV 171

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             +++ AY   G +  A ++F+ +P R+V +W +MI  Y +N      + L N M +   
Sbjct: 172 LTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFL 231

Query: 237 MPNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             N  T  S++T+C   G L +    H   I+ G E  + L       YV        D+
Sbjct: 232 DGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCG-----DI 286

Query: 294 NSARLAFERLEAK------DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
             AR  F+           D+V WTAMI+ Y+  G+      LF         P+ +T  
Sbjct: 287 GDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLA 346

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            +LS C+    +  G K  +++   YG    +   S L D+  + G + +A  V +
Sbjct: 347 SLLSACAQLENIVMG-KLLHVLVVKYGLDDTSLRNS-LVDMYAKCGLIPDAHYVFA 400


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 251/534 (47%), Gaps = 70/534 (13%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRN------- 57
           TG V +A KLFD M + + VS A+MI+ +  +    KA  +F  M   E  +N       
Sbjct: 166 TGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSV 225

Query: 58  ----------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                       +   +A++  Y K G +D+A + F+   + N 
Sbjct: 226 LSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNS 285

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            +W+++++GY +    D+  +LF++M     L +  +   V+  C              +
Sbjct: 286 ITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINAC--------------S 331

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            +C  +E   M   A +    +    +   +A++  Y   G++A A + F  + Q +V  
Sbjct: 332 DLCAVVEGKQMHSFAFKLGFGL---QLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVL 388

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAI 264
           W ++I  Y +NG     + L   M   R +PNE T  S+L +C  +    +    HA  I
Sbjct: 389 WTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARII 448

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           + GF+ E  +    +  Y          ++   L F R+ ++DV+SW AMI   S +GHG
Sbjct: 449 KYGFKLEVPIGSALSAMYTKCG-----SLDDGYLIFWRMPSRDVISWNAMISGLSQNGHG 503

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF +ML  G KPD +TFV +LS CSH GLV++G + F +M   +   P  EHY+C
Sbjct: 504 NKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYAC 563

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDH--VVLGALLGACRLHGDVRMADYIGERLIELQ 442
           + DIL RAG++ EA   +        DH   +   LLGAC+ H +  +  Y GE+L+EL 
Sbjct: 564 MVDILSRAGKLNEAKEFIESATV---DHGLCLWRILLGACKNHRNYELGVYAGEKLVELG 620

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
              S AYVL ++++ A G+ +   +VR+ M+ R V K    S IE+KG  H  +
Sbjct: 621 SPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFV 674



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 207/472 (43%), Gaps = 55/472 (11%)

Query: 7   TGKVKEATKLFDEMSQ--PDPVSCASMITVFLRNHDLPK---AEALFRAMPESQRNIVAE 61
           T  +  A  LFD ++    D VS  S+I  F +NH       A +LFR M      + A 
Sbjct: 59  TNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRM------MRAN 112

Query: 62  SAMIDGYVKAGRVDEARKVFDEIY-------------EGNVYSWTSLISGYFKARQVDEG 108
           + + + +  AG    A  + D +               G+VY  +SL++ Y K   V + 
Sbjct: 113 NVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDA 172

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV-------------ISWTTMCTGLE 154
           R+LFDRMP   +N VSW T++ G A + +  K +EV              + T++ + L 
Sbjct: 173 RKLFDRMP--ERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALT 230

Query: 155 RNAMTKLAREYFVQMPNKDIVAW----NAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            +      R+         ++A     NA++T Y   G++  A   F     +N  TW+A
Sbjct: 231 SDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSA 290

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLG 267
           M+  YA+ G    A+KL N M  S  +P+E T   ++ +C  +   +E    H+ A +LG
Sbjct: 291 MVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLG 350

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F  +  +       Y     G   D   AR  FE ++  DVV WT++I  Y  +G     
Sbjct: 351 FGLQLYVLSAVVDMYA--KCGSLAD---ARKGFECVQQPDVVLWTSIITGYVQNGDYEGG 405

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             L+ +M      P+E+T   VL  CS    +++G++    + + YGFK      S L+ 
Sbjct: 406 LNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIK-YGFKLEVPIGSALSA 464

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +  + G + +   +  +MP   RD +   A++     +G    A  + E+++
Sbjct: 465 MYTKCGSLDDGYLIFWRMP--SRDVISWNAMISGLSQNGHGNKALELFEKML 514


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 181/342 (52%), Gaps = 24/342 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +M  +D+VAWN MI  YV AG+ A A ELF+ MP+RNV +W  +I  YA+    
Sbjct: 132 ARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRP 191

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLT--- 275
             A+++   M       +     S+L +C  +    L    H   +R G  QE  L    
Sbjct: 192 EKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSI 251

Query: 276 ----YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
                KC C            +  A   FE +E K VV+WT +I  ++ HG G Q   +F
Sbjct: 252 IDMYMKCGC------------IEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMF 299

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
            RM +    P+ +TF+ +LS CSH GL + GR  FN+M   Y  KPR EHY C+ D+L R
Sbjct: 300 CRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGR 359

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG +KEA  +V  MP  + +  + GALL A R HGD  + +     LIEL+P++SG Y+L
Sbjct: 360 AGCLKEAQDLVKNMPL-KANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNYIL 418

Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
            +N+ A +  W + +++RK M ER ++ V   S IEV G  H
Sbjct: 419 LSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVH 460



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 21/224 (9%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           +S++ ++     +  A ++F  M  + R++VA + MI GYVKAG    AR++FD + E N
Sbjct: 117 SSLVQLYCTCGHVADARSVFDEM--AVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERN 174

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SWT++I GY + ++ ++   +F RM ++    + V+  +V+  C   G +   E +  
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
             +  GL                  ++I   N++I  Y+  G + +A E+F  M +++V 
Sbjct: 235 FVVRRGL-----------------CQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVV 277

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           TW  +I  +A +G    A+++   M +    PN  T  +IL++C
Sbjct: 278 TWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSAC 321



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 68/308 (22%)

Query: 3   QFGCT-GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           Q  CT G V +A  +FDEM+  D V+   MI  +++  D   A  LF AMPE  RN+V+ 
Sbjct: 121 QLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPE--RNVVSW 178

Query: 62  SAMIDGYVKAGRVDEARKVFDEI-YEG---------------------NVYSWT------ 93
           + +I GY +  R ++A +VF  +  EG                     ++  W       
Sbjct: 179 TTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVR 238

Query: 94  -----------SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGL----- 137
                      S+I  Y K   +++   +F+ M  + K+VV+WTT++ G A +GL     
Sbjct: 239 RGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGM--EEKSVVTWTTLIAGFALHGLGLQAV 296

Query: 138 --IAKLE-------VISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITA 183
               ++E        +++  + +      +T L R YF  M ++      +  +  M+  
Sbjct: 297 EMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDL 356

Query: 184 YVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMK-LLNLMFQSRFMPNET 241
              AG + +A +L   MP + N   W A++     +G  G   + LL+L+      PN +
Sbjct: 357 LGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLI---ELEPNNS 413

Query: 242 TCTSILTS 249
               +L++
Sbjct: 414 GNYILLSN 421


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 35/352 (9%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A+ + ++W+ M TG  R      AR+ F + P KD+V+WN MITAY   G+MA A ELF+
Sbjct: 174 AREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFD 233

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-------- 250
            +P+R+V +WN MI  Y R G    A++L   M +    P+  T  S+L++C        
Sbjct: 234 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 293

Query: 251 ----EGMLENMLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNSARLAFE 301
                  L +M + +   + LG      +  KC    + H VFW                
Sbjct: 294 GQRLHSSLSDMFSRNGFPVVLG-NALIDMYAKCGSMKSAHEVFWS--------------- 337

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KDV +W +++   + HGH  +   +F +MLK   +PDEITFV VL  CSH G+V+K
Sbjct: 338 -MRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDK 396

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR+ FNLM   Y  +P  +HY C+ D+L RAG +KEA   +  M   E + V+   LL A
Sbjct: 397 GREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKC-EPNSVIWRTLLSA 455

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           CR+HG++ +A +   +L++ +   SG YVL +N++A+ GEW    ++RK M+
Sbjct: 456 CRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 507



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  LFD  ++ D V+ ++MIT   R  D+  A  LF   P   +++V+ + MI  
Sbjct: 161 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP--VKDLVSWNVMITA 218

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSW 125
           Y K G +  AR++FD++ E +V SW  +ISGY +         LF++M    +  ++V+ 
Sbjct: 219 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 278

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +++  CA +G +   + +  +++     RN                 +V  NA+I  Y 
Sbjct: 279 LSLLSACADSGDLDVGQRLH-SSLSDMFSRNGFP--------------VVLGNALIDMYA 323

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G+M  A E+F  M  ++V TWN+++   A +G    ++ +   M + +  P+E T  +
Sbjct: 324 KCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVA 383

Query: 246 ILTSCE--GMLE 255
           +L +C   GM++
Sbjct: 384 VLIACSHGGMVD 395



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 41/218 (18%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRN---IV 59
           G    A +LF++M     +PD V+  S+++    + DL   + L  ++ +   RN   +V
Sbjct: 254 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 313

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             +A+ID Y K G +  A +VF  + + +V +W S++ G      V E   +F++M LK 
Sbjct: 314 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKM-LKG 372

Query: 120 K---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK---- 172
           K   + +++  V++ C+H G++ K                      RE+F  M +K    
Sbjct: 373 KVRPDEITFVAVLIACSHGGMVDK---------------------GREFFNLMQHKYRVE 411

Query: 173 -DIVAWNAMITAYVDAGNMAQASELFNLM---PQRNVW 206
            +I  +  M+     AG + +A E  + M   P   +W
Sbjct: 412 PNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 449


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 35/352 (9%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A+ + ++W+ M TG  R      AR+ F + P KD+V+WN MITAY   G+MA A ELF+
Sbjct: 144 AREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFD 203

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-------- 250
            +P+R+V +WN MI  Y R G    A++L   M +    P+  T  S+L++C        
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263

Query: 251 ----EGMLENMLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNSARLAFE 301
                  L +M + +   + LG      +  KC    + H VFW                
Sbjct: 264 GQRLHSSLSDMFSRNGFPVVLG-NALIDMYAKCGSMKSAHEVFWS--------------- 307

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KDV +W +++   + HGH  +   +F +MLK   +PDEITFV VL  CSH G+V+K
Sbjct: 308 -MRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDK 366

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR+ FNLM   Y  +P  +HY C+ D+L RAG +KEA   +  M   E + V+   LL A
Sbjct: 367 GREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKC-EPNSVIWRTLLSA 425

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           CR+HG++ +A +   +L++ +   SG YVL +N++A+ GEW    ++RK M+
Sbjct: 426 CRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  LFD  ++ D V+ ++MIT   R  D+  A  LF   P   +++V+ + MI  
Sbjct: 131 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP--VKDLVSWNVMITA 188

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSW 125
           Y K G +  AR++FD++ E +V SW  +ISGY +         LF++M    +  ++V+ 
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +++  CA +G +   + +  +++     RN                 +V  NA+I  Y 
Sbjct: 249 LSLLSACADSGDLDVGQRLH-SSLSDMFSRNGFP--------------VVLGNALIDMYA 293

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G+M  A E+F  M  ++V TWN+++   A +G    ++ +   M + +  P+E T  +
Sbjct: 294 KCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVA 353

Query: 246 ILTSCE--GMLE 255
           +L +C   GM++
Sbjct: 354 VLIACSHGGMVD 365



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 41/218 (18%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRN---IV 59
           G    A +LF++M     +PD V+  S+++    + DL   + L  ++ +   RN   +V
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             +A+ID Y K G +  A +VF  + + +V +W S++ G      V E   +F++M LK 
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKM-LKG 342

Query: 120 K---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK---- 172
           K   + +++  V++ C+H G++ K                      RE+F  M +K    
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDK---------------------GREFFNLMQHKYRVE 381

Query: 173 -DIVAWNAMITAYVDAGNMAQASELFNLM---PQRNVW 206
            +I  +  M+     AG + +A E  + M   P   +W
Sbjct: 382 PNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 257/531 (48%), Gaps = 90/531 (16%)

Query: 5   GCTGKVKE-ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           G  GK  E A++LFD++   D +S  SMI+ ++ N    +   +++ M            
Sbjct: 195 GIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATI 254

Query: 52  -------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       +R I   + ++D Y K G +D A +VF+++ E
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            NV SWTS+I+GY +  + D   RL  +M    +KL +VV+ T+++  CA +G +   + 
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKL-DVVATTSILHACARSGSLDNGKD 373

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +        +E N                 +   NA++  Y   G+M  A+ +F+ M  +
Sbjct: 374 VHDYIKANNMESN-----------------LFVCNALMDMYTKCGSMDGANSVFSTMVVK 416

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAH 260
           ++ +WN MI                         P+  T   IL +C  +  LE     H
Sbjct: 417 DIISWNTMI---------------------GELKPDSRTMACILPACASLSALERGKEIH 455

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              +R G+  +  +       YV    G    +  ARL F+ + +KD+VSWT MI  Y  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYV--KCGV---LGLARLLFDMIPSKDLVSWTVMISGYGM 510

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +    F  M  +G +PDE++F+ +L  CSH+GL+E+G + F +M   +  +P+ E
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R G + +A   +  +P    D  + GALL  CR++ D+ +A+ + ER+ E
Sbjct: 571 HYACMVDLLSRTGNLSKAYEFIETLPIAP-DATIWGALLCGCRIYHDIELAEKVAERVFE 629

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           L+P ++G YVL AN++A   +W+E  ++R+K+ ++ ++K    S IE+KGK
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 181/432 (41%), Gaps = 68/432 (15%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G +KE  ++FD M + +      M++ + +  D  ++  LF+ M E        
Sbjct: 142 SLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG------ 195

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----P 116
                  ++  R + A ++FD++ + +V SW S+ISGY      + G  ++ +M      
Sbjct: 196 -------IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGID 248

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           + L  ++S   V++GCA++G ++  + +    + +  ER                  I  
Sbjct: 249 VDLATIIS---VLVGCANSGTLSLGKAVHSLAIKSTFERR-----------------INF 288

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N ++  Y   G++  A  +F  M +RNV +W +MI  Y R+G    A++LL  M +   
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGV 348

Query: 237 MPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
             +    TSIL +C   G L+N       I+     E++L     C+ +   +     ++
Sbjct: 349 KLDVVATTSILHACARSGSLDNGKDVHDYIKAN-NMESNLF---VCNALMDMYTKCGSMD 404

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F  +  KD++SW  MI                        KPD  T   +L  C+
Sbjct: 405 GANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACILPACA 443

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
               +E+G++    + R  G+       + L D+  + G +  A R++  M P  +D V 
Sbjct: 444 SLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIP-SKDLVS 500

Query: 415 LGALLGACRLHG 426
              ++    +HG
Sbjct: 501 WTVMISGYGMHG 512



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 125/288 (43%), Gaps = 35/288 (12%)

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ-------- 192
           L+++S    C  L      K  R  F  M  K++  WN M++ Y   G+  +        
Sbjct: 138 LKLVSLYATCGDL------KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 193 ------------ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
                       ASELF+ +  R+V +WN+MI  Y  NG     +++   M       + 
Sbjct: 192 VEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDL 251

Query: 241 TTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  S+L  C   G L      H+LAI+  FE+   + +  T   ++   G   D++ A 
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSTFERR--INFSNTLLDMYSKCG---DLDGAL 306

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE++  ++VVSWT+MI  Y+  G      RL  +M K G K D +    +L  C+ +G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSG 366

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            ++ G+   + + +A   +      + L D+  + G +  A  V S M
Sbjct: 367 SLDNGKDVHDYI-KANNMESNLFVCNALMDMYTKCGSMDGANSVFSTM 413


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 230/466 (49%), Gaps = 37/466 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A  ++ D Y K G ++ AR VF  I + ++ +W ++I+G+       E    F +M 
Sbjct: 335 DLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQM- 393

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK--LAREYFVQMP-NKD 173
                            H GL+   +V   + +C   E   +        Y V+M  N D
Sbjct: 394 ----------------RHTGLVPN-DVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 174 IVAWNAMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           I   N++++ Y    N+  A ++F ++  + ++ +WN ++    +    G  ++L  LMF
Sbjct: 437 IPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMF 496

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            SR  P+  T T++L S   +    +    H   ++ G   + S++      Y       
Sbjct: 497 ASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG--- 553

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  AR  F+ +   D++SW+++I+ Y+  G G + F LF  M   G KP+EITFVG+
Sbjct: 554 --SLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGI 611

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH G+VE+G K +  M   Y   P  EH SC+ D+L RAG +  A   + +M P  
Sbjct: 612 LTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQM-PFV 670

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D VV   LL AC++HG++ +     E ++++ PS+S A V+  N+HA+ G W +FA++R
Sbjct: 671 PDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLR 730

Query: 470 KKMER-RVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
             M R  V KV   S IE+K K H  LA     P R   Y +L+E+
Sbjct: 731 SSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEEL 776



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 180/376 (47%), Gaps = 34/376 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +++ ++ ++  Y K G + EAR +FD +   NV SWTS+ISGY +  + D    L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-- 172
           M L+  ++    T        G I K         C+GL+     KLAR+    +     
Sbjct: 190 M-LRSGHIPDHFTF-------GSIVK--------SCSGLDD---FKLARQLHAHVLKSEF 230

Query: 173 --DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM-KLLN 229
             D++A NA+I+ Y     MA A  +F+ +  +++ +W +MI  +++ G E  A+     
Sbjct: 231 GADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFRE 290

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
           ++ QS + PNE    S  ++C  +LE       H L I+ G   +  L   C+   ++  
Sbjct: 291 MLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSD--LFAGCSLCDMYAK 348

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            GF   + SAR  F  +E  D+V+W A+I  +++  +  +    F++M  +G  P+++T 
Sbjct: 349 CGF---LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTV 405

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + +L  CS   ++  G +  + + +  GF       + L  +  +   + +A++V   + 
Sbjct: 406 LSLLCACSEPVMLNHGIQVHSYIVK-MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDI- 463

Query: 407 PHERDHVVLGALLGAC 422
            ++ D V    LL AC
Sbjct: 464 GNKADIVSWNTLLTAC 479



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 40/394 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +G  G +KEA  +FD M   + VS  SMI+ + R  +   A  L+  M  S       
Sbjct: 141 SMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHF 200

Query: 57  ---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
              +IV   + +D + K  R   A  +  E +  ++ +  +LIS Y K  Q+ +   +F 
Sbjct: 201 TFGSIVKSCSGLDDF-KLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 114 RMPLKLKNVVSWTTVVLGCAHNG-----LIAKLEVISWT-------------TMCTGLER 155
           R  + +K+++SW +++ G +  G     L    E++S +             + C+ L  
Sbjct: 259 R--IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
               +      ++     D+ A  ++   Y   G +  A  +F  + + ++  WNA+I  
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAG 376

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-EGMLEN--MLAHALAIRLGFEQE 271
           +A       +    + M  +  +PN+ T  S+L +C E ++ N  +  H+  +++GF  +
Sbjct: 377 FASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRL 330
             +     C+ +   +    ++N A   FE +  K D+VSW  ++ A        +V RL
Sbjct: 437 IPV-----CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRL 491

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
              M  S  KPD +T   VL         E G +
Sbjct: 492 TKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ 525


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 231/478 (48%), Gaps = 59/478 (12%)

Query: 43  KAEALFRAMPESQR-------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           KA AL + + E Q+             N+   + ++  Y   G + + +KVFDE    ++
Sbjct: 118 KALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDL 177

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM-PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
            SWT+LI  + KA         F  M  L+L+       VVL                 +
Sbjct: 178 VSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVL-----------------S 220

Query: 149 MCTGLERNAMTKLAREY---FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
            C+ L    + +    Y   ++ M   D+   NA++  Y+   ++  A ++F+ MP +NV
Sbjct: 221 ACSNLGDLNLGQKVHSYIRHYIDM-KADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNV 279

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-------- 255
            TWNAMI   A  G    A+    +M      P+E T   +L SC   G+LE        
Sbjct: 280 VTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAY 339

Query: 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
               H LA +        +  KC              ++ A   FE ++ +DV S+TAMI
Sbjct: 340 MRRNHILADKFVGNALLDMYAKCG------------SIDEAFRVFESMKRRDVYSYTAMI 387

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
              + HG     F++F+ M + G +P+E+TF+G+L  CSH GLV +G+K F  MS  Y  
Sbjct: 388 FGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKL 447

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
           +P+AEHY C+ D+L RAG VKEA  ++ KM     D    GALLGACR+HG+V + + + 
Sbjct: 448 RPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRP-DVFACGALLGACRIHGNVDIGESVM 506

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
           ++L EL P   G Y+L  N++++   W +  ++RK M+ ++++K    S IEV G  H
Sbjct: 507 QKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVH 564


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 35/352 (9%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A+ + ++W+ M TG  R      AR+ F + P KD+V+WN MITAY   G+MA A ELF+
Sbjct: 144 AREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFD 203

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-------- 250
            +P+R+V +WN MI  Y R G    A++L   M +    P+  T  S+L++C        
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263

Query: 251 ----EGMLENMLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNSARLAFE 301
                  L +M + +   + LG      +  KC    + H VFW                
Sbjct: 264 GQRLHSSLSDMFSRNGFPVVLG-NALIDMYAKCGSMKSAHEVFWS--------------- 307

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KDV +W +++   + HGH  +   +F +MLK   +PDEITFV VL  CSH G+V+K
Sbjct: 308 -MRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDK 366

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR+ FNLM   Y  +P  +HY C+ D+L RAG +KEA   +  M   E + V+   LL A
Sbjct: 367 GREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKC-EPNSVIWRTLLSA 425

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           CR+HG++ +A +   +L++ +   SG YVL +N++A+ GEW    ++RK M+
Sbjct: 426 CRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  LFD  ++ D V+ ++MIT   R  D+  A  LF   P   +++V+ + MI  
Sbjct: 131 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP--VKDLVSWNVMITA 188

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSW 125
           Y K G +  AR++FD++ E +V SW  +ISGY +         LF++M    +  ++V+ 
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +++  CA +G +   + +  +++     RN                 +V  NA+I  Y 
Sbjct: 249 LSLLSACADSGDLDVGQRLH-SSLSDMFSRNGFP--------------VVLGNALIDMYA 293

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G+M  A E+F  M  ++V TWN+++   A +G    ++ +   M + +  P+E T  +
Sbjct: 294 KCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVA 353

Query: 246 ILTSCE--GMLE 255
           +L +C   GM++
Sbjct: 354 VLIACSHGGMVD 365



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 41/218 (18%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRN---IV 59
           G    A +LF++M     +PD V+  S+++    + DL   + L  ++ +   RN   +V
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             +A+ID Y K G +  A +VF  + + +V +W S++ G      V E   +F++M LK 
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKM-LKG 342

Query: 120 K---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK---- 172
           K   + +++  V++ C+H G++ K                      RE+F  M +K    
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDK---------------------GREFFNLMQHKYRVE 381

Query: 173 -DIVAWNAMITAYVDAGNMAQASELFNLM---PQRNVW 206
            +I  +  ++     AG + +A E  + M   P   +W
Sbjct: 382 PNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 35/352 (9%)

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           A+ + ++W+ M TG  R      AR+ F + P KD+V+WN MITAY   G+MA A ELF+
Sbjct: 144 AREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFD 203

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-------- 250
            +P+R+V +WN MI  Y R G    A++L   M +    P+  T  S+L++C        
Sbjct: 204 QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDV 263

Query: 251 ----EGMLENMLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNSARLAFE 301
                  L +M + +   + LG      +  KC    + H VFW                
Sbjct: 264 GQRLHSSLSDMFSRNGFPVVLG-NALIDMYAKCGSMKSAHEVFWS--------------- 307

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +  KDV +W +++   + HGH  +   +F +MLK   +PDEITFV VL  CSH G+V+K
Sbjct: 308 -MRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDK 366

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           GR+ FNLM   Y  +P  +HY C+ D+L RAG +KEA   +  M   E + V+   LL A
Sbjct: 367 GREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKC-EPNSVIWRTLLSA 425

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           CR+HG++ +A +   +L++ +   SG YVL +N++A+ GEW    ++RK M+
Sbjct: 426 CRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A  LFD  ++ D V+ ++MIT   R  D+  A  LF   P   +++V+ + MI  
Sbjct: 131 GNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECP--VKDLVSWNVMITA 188

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSW 125
           Y K G +  AR++FD++ E +V SW  +ISGY +         LF++M    +  ++V+ 
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +++  CA +G +   + +  +++     RN                 +V  NA+I  Y 
Sbjct: 249 LSLLSACADSGDLDVGQRLH-SSLSDMFSRNGFP--------------VVLGNALIDMYA 293

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G+M  A E+F  M  ++V TWN+++   A +G    ++ +   M + +  P+E T  +
Sbjct: 294 KCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVA 353

Query: 246 ILTSCE--GMLE 255
           +L +C   GM++
Sbjct: 354 VLIACSHGGMVD 365



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 41/218 (18%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRN---IV 59
           G    A +LF++M     +PD V+  S+++    + DL   + L  ++ +   RN   +V
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             +A+ID Y K G +  A +VF  + + +V +W S++ G      V E   +F++M LK 
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKM-LKG 342

Query: 120 K---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK---- 172
           K   + +++  V++ C+H G++ K                      RE+F  M +K    
Sbjct: 343 KVRPDEITFVAVLIACSHGGMVDK---------------------GREFFNLMQHKYRVE 381

Query: 173 -DIVAWNAMITAYVDAGNMAQASELFNLM---PQRNVW 206
            +I  +  M+     AG + +A E  + M   P   +W
Sbjct: 382 PNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIW 419


>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 170/567 (29%), Positives = 272/567 (47%), Gaps = 76/567 (13%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G+ ++A ++FD M   D VS  +MI  ++ N  + +A+ LF  M  S++N+V  ++M+ 
Sbjct: 212 NGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFENM--SEKNVVTWTSMVY 269

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NV 122
           GY + G V EA ++F E+ E NV SWT++ISG+       E   LF  M   +     N 
Sbjct: 270 GYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNG 329

Query: 123 VSWTTVVLGCA--------------------------HNGLIAKLEVISWTTMCTGLERN 156
            +  ++   C                           H+G +AK  V  + +   GL  +
Sbjct: 330 ETLISLAYACGGLGVGFRRLGEQLHAQVISNGWESVDHDGRLAKSLVHMYASF--GLIAS 387

Query: 157 AMTKLAREYFVQMPN-------------------------KDIVAWNAMITAYVDAGNMA 191
           A + L   + +Q  N                          D V+W +MI  Y+DAG+++
Sbjct: 388 AQSLLNESFDLQSCNIIISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYLDAGDVS 447

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
           +A +LF  +  ++  TW  MI    +N     A  LL+ M +    P  +T  S+L S  
Sbjct: 448 RAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNST-YSVLLSSA 506

Query: 252 GMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
           G   N+      H +  +     +  L  + +   ++   G    ++ A   F ++  KD
Sbjct: 507 GATSNLDQGKHLHCVIAKTTACYDPDLILQNSLVSMYAKCG---AIDDAYEIFSKMVRKD 563

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           +VSW ++I+  S+HG   +  +LF  ML SG KP+ +TF+GVLS CSH+GL+ KG + F 
Sbjct: 564 IVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSACSHSGLITKGLELFK 623

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            M   Y  +P  EHY  + D+L RAG++KEA   +S + P   DH V GALLG C L+  
Sbjct: 624 AMKETYSIQPGVEHYISMIDLLGRAGKLKEAEEFISAL-PFTPDHTVYGALLGLCGLNWR 682

Query: 428 VRMADYIGE----RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASF 482
            R A  I E    RL+EL P ++  +V   N++A  G  +   ++RK+M  + VKK    
Sbjct: 683 DRDAAGIAERAAMRLLELDPVNAPGHVALCNMYAGLGRHEMEKEMRKEMGIKGVKKTPGC 742

Query: 483 SQIEVKGKDHTLLAPMR---EMGYVVL 506
           S + V G+ +  L+  +   E G +VL
Sbjct: 743 SWVVVNGRANVFLSGDKSASEAGQMVL 769



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 190/428 (44%), Gaps = 61/428 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVS----CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G +  A  L D++ Q   +S    C S++T + +   L +A  LF  MPE  RNIV  +A
Sbjct: 86  GGLVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYLDEARVLFEVMPE--RNIVTCNA 143

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GYVK  R++EA  +F E+ + NV SWT +++      + D+   LFD MP +  NVV
Sbjct: 144 MLTGYVKCRRLNEAWTLFREMPK-NVVSWTVMLTALCDDGRSDDAVELFDEMPER--NVV 200

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW T+V G   NG   K           + +SW  M  G   N   + A+  F  M  K+
Sbjct: 201 SWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEKN 260

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V W +M+  Y   G++ +A  LF  MP+RNV +W AMI  +A N     A+ L   M +
Sbjct: 261 VVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFYREALMLFLEMKK 320

Query: 234 --SRFMPNETTCTSILTSCEGM------LENMLAHALAIRLGFEQ-------ETSLTYKC 278
                 PN  T  S+  +C G+      L   L HA  I  G+E          SL +  
Sbjct: 321 DVDAISPNGETLISLAYACGGLGVGFRRLGEQL-HAQVISNGWESVDHDGRLAKSLVHMY 379

Query: 279 --------------------TCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILA 317
                               +C+ +   +    D   A   F R+E+  D VSWT+MI  
Sbjct: 380 ASFGLIASAQSLLNESFDLQSCNIIISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDG 439

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y + G   + F LF ++       D +T+  ++S      L  +     + M R  G KP
Sbjct: 440 YLDAGDVSRAFDLFQKL----HDKDGVTWTVMISGLVQNELFAEAASLLSDMVRC-GLKP 494

Query: 378 RAEHYSCL 385
               YS L
Sbjct: 495 LNSTYSVL 502


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 212/445 (47%), Gaps = 37/445 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A++  Y + G     RKVFD     ++ SW S+++GY    +++  + LFD MP
Sbjct: 143 DLFTRNALVSFYCRIGDCRSGRKVFDHGAR-DLVSWNSMVAGYVACGELELAQELFDGMP 201

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIV 175
           L+                       +  SW TM     +R+     ARE F + PN+D+V
Sbjct: 202 LR-----------------------DAFSWATMIDAYGKRSGGVDRARELFDETPNRDLV 238

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            W +MI  Y   G M +A  LF  MP+RNV +W+ ++D Y R G    A++L   M +  
Sbjct: 239 CWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCG 298

Query: 236 FMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+        T+C   G LE     H+      + ++  + +         D   +  
Sbjct: 299 IKPDRVAAVGAFTACAQLGALEQGRWLHS------YLEKKKVLFDVVVQTALIDMYMKCG 352

Query: 293 -VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ++  +L FE +  K VV+W  MI+    H  G    +LF +M   G   D+++ + VL+
Sbjct: 353 RLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLT 412

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C+HAGL+ +G   F+ M + +G  P+ EHY  L D+L RAG +  A   +  M P E  
Sbjct: 413 ACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETM-PMEPT 471

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + G+LL ACR H  V +A+   ERL  L     G YVL +N++A  G WD   ++R+ 
Sbjct: 472 PELWGSLLAACRSHRCVELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRL 531

Query: 472 MERR-VKKVASFSQIEVKGKDHTLL 495
           M    +KK    S IEV G+ H  +
Sbjct: 532 MSAEGMKKDIGRSVIEVDGQTHEFV 556



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G  +   K+FD  ++ D VS  SM+  ++   +L  A+ LF  MP   R+  + + MID 
Sbjct: 158 GDCRSGRKVFDHGAR-DLVSWNSMVAGYVACGELELAQELFDGMP--LRDAFSWATMIDA 214

Query: 68  YVK-AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           Y K +G VD AR++FDE    ++  W S+I GY +  ++DE R LF+ MP   +NV+SW+
Sbjct: 215 YGKRSGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMP--ERNVISWS 272

Query: 127 TVVLGCAHNGLIAK-LEVISWTTMC-------------TGLERNAMTKLAREYFVQMPNK 172
            VV G    G  ++ LE+      C             T   +    +  R     +  K
Sbjct: 273 IVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKK 332

Query: 173 ----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
               D+V   A+I  Y+  G +     +F  MP ++V TWN MI     +     A+KL 
Sbjct: 333 KVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLF 392

Query: 229 NLMFQSRFMPNETTCTSILTSC 250
             M       ++ +  ++LT+C
Sbjct: 393 YQMEAEGAPIDDLSVLAVLTAC 414



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G V  A +LFDE    D V   SMI  + R   + +A ALF  MPE  RN+++ S ++D
Sbjct: 219 SGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPE--RNVISWSIVVD 276

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA----RQVDEGRRLFDRMPLK--LK 120
           GYV+ G   EA ++F  +    +        G F A      +++GR L   +  K  L 
Sbjct: 277 GYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLF 336

Query: 121 NVVSWTTVV---LGCAHNGL-------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +VV  T ++   + C    L       +    V++W  M  GL  ++    A + F QM 
Sbjct: 337 DVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQME 396

Query: 171 NK----DIVAWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPE 221
            +    D ++  A++TA   AG +++   +F+ M +       V  + A++D   R G  
Sbjct: 397 AEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHL 456

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A   +  M      P      S+L +C
Sbjct: 457 DHARHAIETMPME---PTPELWGSLLAAC 482



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 20/132 (15%)

Query: 199 LMP---QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE 255
           L+P    R+ + WN +I  +A   P  A +     M ++   P+  T  ++L +C   + 
Sbjct: 69  LLPGPASRDAFPWNTLIRLHAPASPRNA-LAYFACMRRAAVEPDAYTFPAVLKACACGVL 127

Query: 256 NMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
            +  HA A+R G     F +   +++ C             D  S R  F+   A+D+VS
Sbjct: 128 GLPVHAEAVRTGMDGDLFTRNALVSFYCRIG----------DCRSGRKVFDH-GARDLVS 176

Query: 311 WTAMILAYSNHG 322
           W +M+  Y   G
Sbjct: 177 WNSMVAGYVACG 188


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/447 (31%), Positives = 223/447 (49%), Gaps = 27/447 (6%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTV 128
           A  +  A  +F  I   N Y W ++I  Y  +   +    +F +M     L +  ++T  
Sbjct: 55  AQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFA 114

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDI 174
           +  C     + +   I    + TGL      +N +  L         AR    +M  +D+
Sbjct: 115 LKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDV 174

Query: 175 VAWNAMITAYVDAGNMAQASE-LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           V+WNA+++AY + G M  AS  +F   P +NV +WNAMI  Y+  G     + L   M  
Sbjct: 175 VSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQH 234

Query: 234 SRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           +   P+  T  S+L++C     + +    HA   + G   +  +       Y        
Sbjct: 235 AGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCG---- 290

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +  A   F     KD+ +W ++I   S HG G    ++F+ ML  G KP+E+TFV VL
Sbjct: 291 -SIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 349

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CS AGL+++GR+ FNLM   +G +P  EHY C+ D+L R G ++EA  +V KMP  E 
Sbjct: 350 SACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEA 409

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
             VV  +LLGACR HG+V +A+ + ++L+EL P  S ++V  +N++A+ G W +  +VR+
Sbjct: 410 S-VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQ 468

Query: 471 KMERR-VKKVASFSQIEVKGKDHTLLA 496
           KM  + V+K    S IEV G  +  LA
Sbjct: 469 KMRAQGVRKDPGCSMIEVDGTVYEFLA 495



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 34/293 (11%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A ++    A  +  A  +F+ +P  N + WN +I  YA +    AA+ + + M  +  +P
Sbjct: 47  ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106

Query: 239 NETTCTSILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYV-----FW 285
           ++ T T  L SC    G+ E    H   ++ G     F Q T +    +C  +       
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166

Query: 286 DWGFQLDVNS-----------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           D   + DV S                 +R  F     K+VVSW AMI  YS+ G   +V 
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 226

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M  +G KPD  T V VLS C+H G + +G      + +  G        + L D+
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKN-GISIDGFVATALVDM 285

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI-GERLIE 440
             + G +++A+ V +      +D     +++     HG  + A  I  E L+E
Sbjct: 286 YSKCGSIEKALEVFNSCL--RKDISTWNSIISGLSTHGSGQHALQIFSEMLVE 336



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 147/308 (47%), Gaps = 39/308 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLFDRM 115
           ++  ++ +I  Y   G +++AR + D + E +V SW +L+S Y +   ++   RR+F   
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGET 201

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA------------- 162
           P  +KNVVSW  ++ G +H G  +++ V+       G++ +  T ++             
Sbjct: 202 P--VKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQ 259

Query: 163 REYFVQMPNKDIVAWN-----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
            E+     +K+ ++ +     A++  Y   G++ +A E+FN   ++++ TWN++I   + 
Sbjct: 260 GEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLST 319

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE------NMLAHALAIRLGFE 269
           +G    A+++ + M    F PNE T   +L++C   G+L+      N++ H   I+   E
Sbjct: 320 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 379

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV-VSWTAMILAYSNHGHGFQVF 328
                 Y C    +    G    +  A    +++  K+  V W +++ A  NHG+     
Sbjct: 380 H-----YGCMVDLL----GRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAE 430

Query: 329 RLFARMLK 336
           R+  ++L+
Sbjct: 431 RVAQKLLE 438



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 28/225 (12%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAE 61
           G+  E   LF++M     +PD  +  S+++       L + E +   + ++  +I     
Sbjct: 220 GRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVA 279

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D Y K G +++A +VF+     ++ +W S+ISG           ++F  M ++   
Sbjct: 280 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 339

Query: 120 KNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMTKLARE 164
            N V++  V+  C+  GL+                +  +  +  M   L R  + + A E
Sbjct: 340 PNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEE 399

Query: 165 YFVQMPNKDI-VAWNAMITAYVDAGNMAQ----ASELFNLMPQRN 204
              +MP K+  V W +++ A  + GN+      A +L  L PQ +
Sbjct: 400 LVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQES 444


>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 172/580 (29%), Positives = 271/580 (46%), Gaps = 96/580 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-------------- 53
           G+ ++A +LFDEM + + VS  +++T  +RN D+ KA+ +F AMP               
Sbjct: 255 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 314

Query: 54  ---------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
                          S++N+V  ++M+ GY + G V EA ++F E+ E N+ SWT++ISG
Sbjct: 315 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 374

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVV--SWTTVVLGCAHNGLIAKL---------EVIS-- 145
           +       E   LF  M   +  V     T + L  A  GL  +          +VIS  
Sbjct: 375 FAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNG 434

Query: 146 WTTM---------------CTGLERNAMTKLAREYFVQMPN------------------- 171
           W T+                +GL  +A + L   + +Q  N                   
Sbjct: 435 WETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLF 494

Query: 172 ------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
                  D V+W +MI  Y++AG++++A  LF  +  ++  TW  MI    +N     A 
Sbjct: 495 ERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAA 554

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCH 281
            LL+ M +    P  +T  S+L S  G   N+      H +  +     +  L  + +  
Sbjct: 555 SLLSDMVRCGLKPLNST-YSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLV 613

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
            ++   G    +  A   F ++  KD VSW +MI+  S+HG   +   LF  ML SG KP
Sbjct: 614 SMYAKCG---AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKP 670

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           + +TF+GVLS CSH+GL+ +G + F  M   Y  +P  +HY  + D+L RAG++KEA   
Sbjct: 671 NSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEF 730

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE----RLIELQPSSSGAYVLSANVHA 457
           +S + P   DH V GALLG C L+   + A+ I E    RL+EL P ++  +V   NV+A
Sbjct: 731 ISAL-PFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYA 789

Query: 458 ARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
             G  D   ++RK+M  + VKK    S + V G+ +  L+
Sbjct: 790 GLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLS 829



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 217/501 (43%), Gaps = 90/501 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVS----CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G +  A  L D++ Q   ++      S+++ + +   L +A  LF  MPE  RNIV  +A
Sbjct: 159 GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPE--RNIVTCNA 216

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GYVK  R++EA  +F E+ + NV SWT +++      + ++   LFD MP +  NVV
Sbjct: 217 MLTGYVKCRRMNEAWTLFREMPK-NVVSWTVMLTALCDDGRSEDAVELFDEMPER--NVV 273

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW T+V G   NG + K           +V+SW  M  G   N   + A+  F  M  K+
Sbjct: 274 SWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKN 333

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V W +M+  Y   G++ +A  LF  MP+RN+ +W AMI  +A N     A+ L   M +
Sbjct: 334 VVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKK 393

Query: 234 --SRFMPNETTCTSILTSCEGM------LENMLAHALAIRLGFEQ-------ETSLTYKC 278
                 PN  T  S+  +C G+      L   L HA  I  G+E          SL +  
Sbjct: 394 DVDAVSPNGETLISLAYACGGLGVEFRRLGEQL-HAQVISNGWETVDHDGRLAKSLVHMY 452

Query: 279 --------------------TCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILA 317
                               +C+ +   +    D+  A   FER+++  D VSWT+MI  
Sbjct: 453 ASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDG 512

Query: 318 YSNHGHGFQVFRLFAR-------------------------------MLKSGTKPDEITF 346
           Y   G   + F LF +                               M++ G KP   T+
Sbjct: 513 YLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTY 572

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYG-FKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             +LS       +++G+    ++++    + P     + L  +  + G +++A  + +KM
Sbjct: 573 SVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKM 632

Query: 406 PPHERDHVVLGALLGACRLHG 426
              ++D V   +++     HG
Sbjct: 633 V--QKDTVSWNSMIMGLSHHG 651


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 251/504 (49%), Gaps = 66/504 (13%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAESAMIDGYVKA 71
           T +F+ +S P  V   + I  +  N+ +    +LF  M  S    +     ++I    K 
Sbjct: 77  TSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKV 136

Query: 72  GRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             V E              G+V+  TSLI  Y K  ++   R++FD M    +NVVSWT 
Sbjct: 137 CGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEM--GERNVVSWTA 194

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
           ++ G A    + +                     AR+ F +MP K+ V+WNA+I+ YV  
Sbjct: 195 MIAGYASFSDLVE---------------------ARKLFDEMPEKNAVSWNAIISGYVKC 233

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNG------------PEGAAMKLLNLMFQS- 234
           G++  A ++F+ MP RNV ++  MID YA++G            PE   +    L+F+  
Sbjct: 234 GDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVC 293

Query: 235 ---RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
                 P+E    S++++C  M    LA  +     + +++S+      H +       +
Sbjct: 294 AEWNVKPDEFIMVSLMSACSQMGSLELAKWVD---DYVRKSSIDVH-RAHVI----AALI 345

Query: 292 DVNS-------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
           D+N+       A   FE +  +D++S+ +M+   S HG G Q   LF+RML  G  PD++
Sbjct: 346 DMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDV 405

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            F  +L+ CS AGLV++G   F  M   Y   P  +HY+C+ D+L RAG++KEA  ++  
Sbjct: 406 AFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKS 465

Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
           MP  PH       GALLGAC+LH D+ + + + ++L EL+P ++G YVL +N++AA  +W
Sbjct: 466 MPVEPHAG---AWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQW 522

Query: 463 DEFAQVRKKM-ERRVKKVASFSQI 485
            + + +R KM ER ++K+   S I
Sbjct: 523 LDVSLLRNKMRERGIRKIPGCSWI 546



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 138/253 (54%), Gaps = 12/253 (4%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G++  A K+FDEM + + VS  +MI  +    DL +A  LF  MPE  +N V+ +A
Sbjct: 168 YGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE--KNAVSWNA 225

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I GYVK G +  ARK+FDE+   NV S+T++I GY K+  +   R +F+  P   ++VV
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAP--ERDVV 283

Query: 124 SWTTVVLG-CAH-NGLIAKLEVISWTTMCTGLERNAMTKLAREYF----VQMPNKDIVAW 177
           +W+ ++   CA  N    +  ++S  + C+ +    + K   +Y     + +    ++A 
Sbjct: 284 AWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA- 342

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A+I      G+M +A++LF  MP+R++ ++ +M+   + +G    A+ L + M      
Sbjct: 343 -ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLT 401

Query: 238 PNETTCTSILTSC 250
           P++   T ILT+C
Sbjct: 402 PDDVAFTVILTAC 414



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N +  + +FN +   +   WN  I  Y+ N      + L   M +S  +P++ T  S++ 
Sbjct: 72  NFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIK 131

Query: 249 SCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C    G+ E +  H  A+R G   +  +       Y     G   ++  AR  F+ +  
Sbjct: 132 ACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLY-----GKCGEILCARKVFDEMGE 186

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++VVSWTAMI  Y++     +  +LF  M     + + +++  ++S     G +   RK 
Sbjct: 187 RNVVSWTAMIAGYASFSDLVEARKLFDEM----PEKNAVSWNAIISGYVKCGDLRSARKM 242

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE---------------- 409
           F+ M            ++ + D   ++G +  A  V  + P  +                
Sbjct: 243 FDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWN 297

Query: 410 --RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA--NVHAARGEWDEF 465
              D  ++ +L+ AC   G + +A ++ + + +       A+V++A  +++A  G  D  
Sbjct: 298 VKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRA 357

Query: 466 AQVRKKMERR 475
            ++ ++M +R
Sbjct: 358 TKLFEEMPKR 367


>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 233/473 (49%), Gaps = 71/473 (15%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           +L  A  +F  MPE  R++++ ++MI  Y+  G +  A  + D++ E N+ +W S++ G 
Sbjct: 61  NLGSAYRVFEEMPE--RDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGL 118

Query: 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159
            KA  ++    +F++MPL+ +                       +SW +M +G  R    
Sbjct: 119 SKAGNMELAHSVFEQMPLRNE-----------------------VSWNSMISGYVRIGDV 155

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           + A+  F QMP K +V+W AMI+ Y   G++  A  +FN MP +NV +WNAMI  Y  N 
Sbjct: 156 RAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNH 215

Query: 220 PEGAAMKLLN-LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC 278
               A+ + + ++      P++TT  SIL++C  +    L H   I   + ++  L    
Sbjct: 216 EFDQALCVFHHMLINGECRPDQTTLISILSACAHL--GSLEHGKWIN-SYIKKNKLHLSI 272

Query: 279 TCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
                  D   +  DV +A+  F  +  + +++WT M+   + +G   +   LF +M   
Sbjct: 273 PLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLE 332

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           GTKPD++ F+ VLS C+H GLVE+G++ F+ M + +G KPR EHY C+ D+L RAG+++E
Sbjct: 333 GTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEE 392

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A                                      ++++ +PS+     L +N+ A
Sbjct: 393 A--------------------------------------KIMDQEPSNPSYLTLVSNLSA 414

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           + G W++    R  M ++R++KV   S I+V  + H  LA  ++  +V  KE+
Sbjct: 415 SFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLA--KDTRHVQRKEI 465



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 29/277 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G+++ A  L D+M + + V+  S++    +  ++  A ++F  MP   RN V+ 
Sbjct: 85  SAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMP--LRNEVSW 142

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++MI GYV+ G V  A+ +F ++ E  V SWT++ISGY     +     +F+ MP  +KN
Sbjct: 143 NSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMP--VKN 200

Query: 122 VVSWTTVVLGCAHNG------------LIA------KLEVISWTTMCTGLERNAMTKLAR 163
           VVSW  ++ G  HN             LI       +  +IS  + C  L      K   
Sbjct: 201 VVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWIN 260

Query: 164 EYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            Y  +  NK    I   NA+I  +   G++  A E+F+ M +R + TW  M+   A NG 
Sbjct: 261 SYIKK--NKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGK 318

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
              A+ L + M      P++    ++L++C   G++E
Sbjct: 319 CREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVE 355


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 163/525 (31%), Positives = 251/525 (47%), Gaps = 52/525 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +  A KLF+ M Q D V+   +I  +++N    +A  LF AM  +  + + V  ++ +
Sbjct: 262 GNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFL 321

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
              +++G +   ++V   I       +VY  ++LI  YFK   V+  R++F +    L +
Sbjct: 322 PSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQN--ILVD 379

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------KLAREYF 166
           V   T ++ G   +GL I  +    W     G+  N++T              K  +E  
Sbjct: 380 VAVCTAMISGYVLHGLNIDAINTFRWLIQ-EGMVTNSLTMASVLPACAAVAALKPGKELH 438

Query: 167 VQMPNK---DIVAWNAMIT-AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             +  K   +IV   + IT  Y   G +  A E F  M  R+   WN+MI  +++NG   
Sbjct: 439 CHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPE 498

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQET------- 272
            A+ L   M  S    +  + +S L+   +   +      H   IR  F  +T       
Sbjct: 499 IAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLI 558

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +  KC    + W              F  ++ K+ VSW ++I AY NHG   +   L+ 
Sbjct: 559 DMYSKCGNLALAW------------CVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYH 606

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML++G  PD +TF+ ++S C HAGLV++G   F+ M+R YG   R EHY+C+ D+  RA
Sbjct: 607 EMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRA 666

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G+V EA   +  M P   D  V G LLGACRLHG+V +A      L+EL P +SG YVL 
Sbjct: 667 GRVHEAFDTIKSM-PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 725

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +NVHA  GEW    +VR  M E+ V+K+  +S I+V G  H   A
Sbjct: 726 SNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSA 770



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 160/384 (41%), Gaps = 38/384 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           ++ A SA+I  Y   G + +AR+VFDE+   +   W  ++ GY K+   D     F  M 
Sbjct: 146 DLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMR 205

Query: 116 -PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
               + N V++T ++  CA  G             C G + + +   +   F      D 
Sbjct: 206 TSYSMVNSVTYTCILSICATRG-----------NFCAGTQLHGLVIGSGFEF------DP 248

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N ++  Y   GN+  A +LFN MPQ +  TWN +I  Y +NG    A  L N M  +
Sbjct: 249 QVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISA 308

Query: 235 RFMPNETTCTSILTSC--EGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              P+  T  S L S    G L +    H+  +R     +  L  K     V++  G   
Sbjct: 309 GVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL--KSALIDVYFKGG--- 363

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           DV  AR  F++    DV   TAMI  Y  HG        F  +++ G   + +T   VL 
Sbjct: 364 DVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLP 423

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPP 407
            C+    ++ G++        +  K R E+     S + D+  + G++  A     +M  
Sbjct: 424 ACAAVAALKPGKEL-----HCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS- 477

Query: 408 HERDHVVLGALLGACRLHGDVRMA 431
            +RD V   +++ +   +G   +A
Sbjct: 478 -DRDSVCWNSMISSFSQNGKPEIA 500


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 158/501 (31%), Positives = 245/501 (48%), Gaps = 42/501 (8%)

Query: 5   GCT--GKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEALFRAMPESQRN- 57
           GC   G  + A ++F EM+      D  +  S++    +  DL    A+ R + +     
Sbjct: 183 GCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGD 242

Query: 58  -IVAESAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            +  ++A+ID Y K   +++AR+VFD   ++ +V SWT++I  Y    +  E   L  +M
Sbjct: 243 YVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQM 302

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DI 174
              L +  +W         NG+     ++   + C  +      K      +++  K DI
Sbjct: 303 ---LMSGAAWP--------NGVT----MVYLLSACASMPSGKHAKCTHALCIRLGLKSDI 347

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLM 231
               A+I AY   G M    +L  L  +R  W   TWNA +  Y  +G E  A++L   M
Sbjct: 348 AVETALIDAYARCGKM----KLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRM 403

Query: 232 FQSRFMPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 P+  T  SIL +      + E    H   + LGF + T +        V+   G
Sbjct: 404 IAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLI--DVYSKAG 461

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+++A   F+ L  KDVV+WT +I  YS HGH      L+ RM++SG KP+ +T   
Sbjct: 462 ---DLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIAT 518

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  CSHAG++++G K F  M   +G  P  EHYSCL D+L RAG+++EA R++  M P 
Sbjct: 519 LLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDM-PF 577

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E    V GALLGAC LH +V   +   +RL +L P ++G+YVL  N++AA   W +   V
Sbjct: 578 EPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDV 637

Query: 469 RKKM-ERRVKKVASFSQIEVK 488
           R+ M ER + K    S +E +
Sbjct: 638 RRMMVERGLLKEPGSSLVEAR 658



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 205/494 (41%), Gaps = 42/494 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G+   A  L  +M QP PVS + S++  +       +A A++ AM          +A   
Sbjct: 59  GRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDHLTFPFAAKAC 118

Query: 67  GYVKAGRVDEAR--KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
             ++ GR   A   +     + G+ Y   +LIS Y     V     +F  M  + + VVS
Sbjct: 119 AGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM--RNRTVVS 176

Query: 125 WTTVVLGCAHNGLIAK-LEV----------ISWTTMCTGLERNAMTK---LAREYFVQMP 170
           W  V+ GC  NG   + LEV          I   T+ + L   A  K     R     + 
Sbjct: 177 WNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVE 236

Query: 171 NK---DIVAW-NAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAM 225
           +K   D VA  NA+I  Y    ++  A  +F+     ++V +W AMI  Y  N     A+
Sbjct: 237 DKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAI 296

Query: 226 KL-LNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCH 281
            L   ++      PN  T   +L++C  M     A   HAL IRLG + + ++       
Sbjct: 297 SLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDA 356

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y          +   RL  ER   +   +W A +  Y+  G   +   LF RM+    +P
Sbjct: 357 YARCG-----KMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRP 410

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D  T   +L   + +  +++G K  +      GF    E  + L D+  +AG +  A  +
Sbjct: 411 DSATMASILPAYAESADLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWAL 469

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL--QPSS-SGAYVLSANVHAA 458
              +P  E+D V    ++    +HG  R A  + +R++E   +P++ + A +L A  HA 
Sbjct: 470 FQWLP--EKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHA- 526

Query: 459 RGEWDEFAQVRKKM 472
            G  DE  +V K M
Sbjct: 527 -GMIDEGIKVFKDM 539


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 225/441 (51%), Gaps = 26/441 (5%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           A++ +++ Y   G +  ARKVFD++ +  V SW ++I  + +  Q +E  RLFDRM +K 
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM-MKS 180

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWN 178
           +NV                 ++ +++  T C      AM K   EY  +    + +V   
Sbjct: 181 ENVKP--------------NEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNT 226

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            ++  Y   G +  A +LF+   ++N+++WN MI+ +  +     A+ L   M       
Sbjct: 227 VLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKG 286

Query: 239 NETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           ++ T  S+L +C   G LE     HA   +   + + +L       Y          + +
Sbjct: 287 DKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCG-----SIET 341

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F  +  KDV++WTA+IL  +  G      + F  M   G KPD ITFVGVL+ CSH
Sbjct: 342 AIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSH 401

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           AG V++G   FN MS  YG +P  EHY  L DIL RAG++ EA  ++  M P   D  VL
Sbjct: 402 AGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSM-PMAPDQFVL 460

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ER 474
           G LLGACR+HG++  A+   ++L+E+ P  SG YVL +N++ +  +W+E  + R+ M ER
Sbjct: 461 GGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAER 520

Query: 475 RVKKVASFSQIEVKGKDHTLL 495
            ++K    SQIEV G  H  +
Sbjct: 521 GMRKPPGCSQIEVHGVVHEFV 541



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 28/260 (10%)

Query: 12  EATKLFDEM-----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAM 64
           EA +LFD M      +P+ V+  +++T   R  DL   + +   + E    R++V  + +
Sbjct: 169 EAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVL 228

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           +D Y K G V  AR +FD+  E N++SW  +I+G+ +    +E   LF  M  K    + 
Sbjct: 229 MDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDK 288

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           V+  +++L C H G    LE+  W         +A  K  R       + D+    A++ 
Sbjct: 289 VTMASLLLACTHLG---ALELGKWL--------HAYIKKQR------IDVDVALGTALVD 331

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G++  A ++F+ MP+++V TW A+I   A  G    A++  + M      P+  T
Sbjct: 332 MYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAIT 391

Query: 243 CTSILTSCE--GMLENMLAH 260
              +L +C   G ++  ++H
Sbjct: 392 FVGVLAACSHAGFVDEGISH 411



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 21/227 (9%)

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           ++G++  A  +F+ +P    +T N++I           A+     M     +P+  T  S
Sbjct: 34  ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARL 298
           +  SC    E    H  + +LGF  +T       ++   C C            + SAR 
Sbjct: 94  LFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGC------------LVSARK 141

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAG 357
            F+++E K VVSW  MI  ++      +  RLF RM+KS   KP+E+T V VL+ C+ A 
Sbjct: 142 VFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARAR 201

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            +   ++    +   +GF       + L D+  + G V+ A  +  K
Sbjct: 202 DLAMVKRIHEYIDE-HGFGRHVVLNTVLMDVYCKCGCVQLARDLFDK 247


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 194/360 (53%), Gaps = 28/360 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F    N+D+V W A+I  Y  +G +  A +LF+ MP++N  +W+AMI  YA+ G  
Sbjct: 142 ARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLF 201

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR--------LGFEQ 270
             A++L N M  + F PN       LT+C     + +    HA   R        LG   
Sbjct: 202 REALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG-TA 260

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              +  KC C            V +A   F+ +  +DV ++T++I   +NHGH      +
Sbjct: 261 LIDMYAKCGC------------VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEM 308

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RM   G  P+E+TF+ +LS CS  GLVE+G + F  M+  YG +P  +HY CL D+L 
Sbjct: 309 FTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLG 368

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG +++A RVV +MP  E D  VLGALL ACR+HGDV +     E L E      G +V
Sbjct: 369 RAGMLEDAKRVVREMPL-EPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHV 427

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           L +N++A+  +W++ A+VRK M E++VKKV   S IEV G     +A   +M +V + E+
Sbjct: 428 LLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAG--DMSHVFMDEI 485



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 32/268 (11%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+++ A  LF  +P+R  + WN M+  +         + L   M  + F+PN  T + +L
Sbjct: 36  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 95

Query: 248 TSCEGMLE---NMLAHALAIRLGFE-----QETSLTYKCTCHYV-----FWDWGFQLDVN 294
            +C  + +    +L HA A+RLG+E     Q   L    +C+ +      +D     DV 
Sbjct: 96  QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 155

Query: 295 S----------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
           +                AR  F+ +  K+ VSW+AMI  Y+  G   +   LF  M  +G
Sbjct: 156 TWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAG 215

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P+    VG L+ C+  G +++GR     + R      R    + L D+  + G V+ A
Sbjct: 216 FRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG-TALIDMYAKCGCVETA 274

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHG 426
            RV  +M   +RD     +L+     HG
Sbjct: 275 CRVFDEML--DRDVFAFTSLISGLANHG 300



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 26/220 (11%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++ ++  Y     +D AR++FD     +V +WT++I+GY K+ QV   R+LFD MP   K
Sbjct: 126 QNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP--EK 183

Query: 121 NVVSWTTVVLGCAHNGLIAK-LE----------------VISWTTMCTGLERNAMTKLAR 163
           N VSW+ ++ G A  GL  + LE                ++   T C  L      +   
Sbjct: 184 NAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIH 243

Query: 164 EYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            Y  +  N+   D +   A+I  Y   G +  A  +F+ M  R+V+ + ++I   A +G 
Sbjct: 244 AYVDR--NRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGH 301

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
              A+++   M      PNE T   +L++C   G++E  L
Sbjct: 302 SATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 341



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 55/254 (21%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-------------- 52
           +G+V  A +LFDEM + + VS ++MIT + +     +A  LF  M               
Sbjct: 167 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 226

Query: 53  --------------------ESQRNI---VAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                               +  R +   +  +A+ID Y K G V+ A +VFDE+ + +V
Sbjct: 227 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDV 286

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK-LEVISW 146
           +++TSLISG            +F RM  +    N V++  ++  C+  GL+ + L +   
Sbjct: 287 FAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS 346

Query: 147 TTMCTGLE--------------RNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
            T   G+E              R  M + A+    +MP   D     A++ A    G++ 
Sbjct: 347 MTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVE 406

Query: 192 QASELFNLMPQRNV 205
              E    + +R++
Sbjct: 407 LGKETVECLAERSL 420



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 30/266 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           +  A +LFD     D V+  ++I  + ++  +  A  LF  MPE  +N V+ SAMI GY 
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPE--KNAVSWSAMITGYA 196

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA----RQVDEGRRL---FDRMPLKLKNV 122
           + G   EA ++F+++           I G   A      +D+GR +    DR  + L  +
Sbjct: 197 QIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI 256

Query: 123 VSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           +    + +    GC          +   +V ++T++ +GL  +  +  A E F +M N+ 
Sbjct: 257 LGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEG 316

Query: 174 I----VAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAA 224
           +    V +  +++A    G + +   +F  M      +  V  +  ++D   R G    A
Sbjct: 317 VCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDA 376

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSC 250
            +++  M      P+     ++L +C
Sbjct: 377 KRVVREM---PLEPDSYVLGALLNAC 399


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 160/538 (29%), Positives = 262/538 (48%), Gaps = 44/538 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G +  A  LFDEM + D VS  +MI+ +     L  A  LF  M  S  ++   + S ++
Sbjct: 49  GFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLL 108

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            G     R D   +V   +    YE NVY  +SL+  Y K  +V++    F    +   N
Sbjct: 109 KGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKE--ISEPN 166

Query: 122 VVSWTTVVLGCAHNG-------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-- 172
            VSW  ++ G            L+  +E+ +  TM  G     +T L    F  +  +  
Sbjct: 167 SVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVH 226

Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPE 221
                     +I   NAMI++Y D G+++ A  +F+ L   +++ +WN+MI  +A+ G  
Sbjct: 227 AKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQKGLS 286

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKC 278
             A+K  + +  S    ++   +++L SC  +    L    HALA + GF     +    
Sbjct: 287 EDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSL 346

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
              Y     G    + SAR  F+++ +K   V+W AMIL Y+ HG G     LF++M   
Sbjct: 347 IVMYS--KCGI---IESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQ 401

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             K D +TF  +L+ CSH GL+++G +  NLM   Y  +PR EHY+   D+L RAG V +
Sbjct: 402 NVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNK 461

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A  ++  MP +  D +VL   LG CR  G++ MA  +   L+E++P     YV  +++++
Sbjct: 462 AKELIESMPLNP-DPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYS 520

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
              +W+E A V+K M ER VKKV  +S IE++ +     A     P+ +  Y+++K++
Sbjct: 521 DLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDL 578


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 223/443 (50%), Gaps = 26/443 (5%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAH 134
           A+ VFD     + + W  +I G+  + + +    L+ RM       N  ++ +++  C++
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127

Query: 135 ----------NGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                     +  I KL    +V +  ++          KLA   F ++P  D V+WN++
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  YV AG M  A  LF  M ++N  +W  MI  Y +      A++L + M  S   P+ 
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247

Query: 241 TTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            +  + L++C   G LE     H+   +     ++ L   C    ++   G   ++  A 
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG--CVLIDMYAKCG---EMEEAL 302

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ ++ K V +WTA+I  Y+ HGHG +    F  M K G KP+ ITF  VL+ CS+ G
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G+  F  M R Y  KP  EHY C+ D+L RAG + EA R + +MP  + + V+ GA
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPL-KPNAVIWGA 421

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LL ACR+H ++ + + IGE LI + P   G YV  AN+HA   +WD+ A+ R+ M E+ V
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481

Query: 477 KKVASFSQIEVKGKDHTLLAPMR 499
            KV   S I ++G  H  LA  R
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDR 504



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 110/239 (46%), Gaps = 25/239 (10%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           + D  +  S+I  +    +   A  LF  +PE   + V+ +++I GYVKAG++D A  +F
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEP--DDVSWNSVIKGYVKAGKMDIALTLF 204

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLI 138
            ++ E N  SWT++ISGY +A    E  +LF  M    ++  N VS    +  CA  G  
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN-VSLANALSACAQLG-- 261

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
             LE   W        R  M              D V    +I  Y   G M +A E+F 
Sbjct: 262 -ALEQGKWIHSYLNKTRIRM--------------DSVLGCVLIDMYAKCGEMEEALEVFK 306

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            + +++V  W A+I  YA +G    A+     M +    PN  T T++LT+C   G++E
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 250/506 (49%), Gaps = 46/506 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +K A K+F + ++    S  +MI  +L N ++ KA+ LF  M +   +R+ ++ + MI
Sbjct: 319 GDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMI 378

Query: 66  DGYVKAGRVDEARKVF-DEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRM---PLK 118
            G+V     D+A  +F D + EG   + ++  S+++G+     + +G+ +        L+
Sbjct: 379 SGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQ 438

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             + V    V + C  N +IA                      A+  F ++  +D   WN
Sbjct: 439 SNSFVGGALVEMYCKCNDIIA----------------------AQMAFDEISERDTSTWN 476

Query: 179 AMITAYVDAGNMAQASELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           A+I+ Y     + +  EL   M     + NV+TWN+++     N     AM+L N M  S
Sbjct: 477 ALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVS 536

Query: 235 RFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              P+  T   IL +C  +         HA +IR G++ +  +       Y         
Sbjct: 537 SLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCG----- 591

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            +      + ++   ++V   AM+ AY+ HGHG +   +F RML S  +PD +TF+ VLS
Sbjct: 592 SIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLS 651

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            C HAG ++ G + F LM   Y   P  +HY+C+ D+L RAG++ EA +++  MP  E D
Sbjct: 652 SCVHAGSIKIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMP-MEAD 709

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
            V   ALLG C +H +V + +   E+LIEL+PS++G YVL AN++A+ G W + A+ R+ 
Sbjct: 710 SVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTREL 769

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA 496
           M ++ ++K    S IE +   H  LA
Sbjct: 770 MNDKGMQKSPGCSWIEDRDGVHIFLA 795



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 118/503 (23%), Positives = 195/503 (38%), Gaps = 114/503 (22%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A+ID Y K G +DEA+KV + + + +  SW S+I+       V E   L + M 
Sbjct: 168 NVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENML 227

Query: 117 LK--LKNVVSWTTVVLGCAHN--------------------------------------- 135
           L     NVV+W+ V+ G + N                                       
Sbjct: 228 LSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLF 287

Query: 136 ------GLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
                 G I + E+ S   +   L     R    K A + F +   K   ++N MI  Y+
Sbjct: 288 VGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYL 347

Query: 186 DAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + GN+ +A ELF  M Q    R+  +WN MI  +  N     A+ L   +      P+  
Sbjct: 348 ENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSF 407

Query: 242 TCTSILTSCEGML---ENMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDV 293
           T  SILT    M    +    H++AI  G +  +      +   C C+          D+
Sbjct: 408 TLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCN----------DI 457

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSN--------------HGHGFQ------------- 326
            +A++AF+ +  +D  +W A+I  Y+                  GF+             
Sbjct: 458 IAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGL 517

Query: 327 --------VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
                     +LF  M  S  +PD  T   +L+ CS    + +G++      RA G+   
Sbjct: 518 VENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRA-GYDSD 576

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           A   + L D+  + G +K   +V +K+     + V   A+L A  +HG       I  R+
Sbjct: 577 AHIGATLVDMYAKCGSIKHCYQVYNKIS--NPNLVCHNAMLTAYAMHGHGEEGIVIFRRM 634

Query: 439 IE--LQPSS-SGAYVLSANVHAA 458
           ++  ++P   +   VLS+ VHA 
Sbjct: 635 LDSRVRPDHVTFLSVLSSCVHAG 657



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 151/368 (41%), Gaps = 65/368 (17%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----- 115
           ++ ++  Y      ++A  +FD++   N++SWT+++  +       +G  LF+       
Sbjct: 69  QTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGL 128

Query: 116 ---------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL----- 161
                    P+ L        + LG   +G++ K   +  T +  G   NA+  +     
Sbjct: 129 GEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFV--TNVYVG---NALIDMYGKCG 183

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP----QRNVWTWNAMID 213
               A++    M  KD V+WN++ITA V  G + +A +L   M     + NV TW+A+I 
Sbjct: 184 SLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIG 243

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM-------------------L 254
            ++ N  +  +++L   M  +   P+  T  S+L +C  M                    
Sbjct: 244 GFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFS 303

Query: 255 ENMLAHALA--------IRLGFEQETSLTYKCTCHYVFWDWGF--QLDVNSARLAFERLE 304
              +A+AL         ++  F+  +    KC   Y     G+    +V  A+  F ++E
Sbjct: 304 NGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQME 363

Query: 305 A----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
                +D +SW  MI  + ++        LF  +L  G +PD  T   +L+  +    + 
Sbjct: 364 QEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIR 423

Query: 361 KGRKTFNL 368
           +G++  ++
Sbjct: 424 QGKEIHSI 431


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 224/460 (48%), Gaps = 40/460 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A+I   V  G +  ARK+FDE    ++ SW S+I+GY +    DE   L+ +M 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 117 L--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL-------- 161
               + + V+   VV   A    +A    +  +    GL       NA+  +        
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A+  F  M  K +V+W  M+  Y   G +  A  LFN MP+++V  WNA+I  + +   
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-------AHALAIRLGFEQE 271
              A+ L + M  S   P++ T  + L++C   G L+  +        H L + +     
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 272 TSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
               Y KC             ++  A   FE +  ++ ++WTA+I   + HG        
Sbjct: 429 LVDMYAKCG------------NIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISY 476

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F+ M+  G  PDEITF+GVLS C H GLV++GR  F  M+  YG  P+ +HYSCL D+L 
Sbjct: 477 FSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLG 536

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA  ++  M P E D VV GAL    R+HG+V M +    +L+EL P   G YV
Sbjct: 537 RAGFLEEAEELIRSM-PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYV 595

Query: 451 LSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           L AN++     W++  +VRK ME R V+K    S IE+ G
Sbjct: 596 LLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNG 635



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 173/438 (39%), Gaps = 61/438 (13%)

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            +D   K+ +     NV+SW   I GY ++        L+  M  K   +    T  L  
Sbjct: 103 NLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL-- 160

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
                           +C G   +        + +Q+  + D+   NA+I   V  G + 
Sbjct: 161 -------------LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELL 207

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A +LF+    R++ +WN++I+ Y R G    A  L   M +   MP+E T   ++ S  
Sbjct: 208 AARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV-SAS 266

Query: 252 GMLENMLAHALAIRLGFE-QETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVV 309
             LEN+   AL  +L    +E  L           D   +  ++ +A++ FE +  K VV
Sbjct: 267 AQLENL---ALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323

Query: 310 SWTAMILAYSNHG------------------------HGF-------QVFRLFARMLKSG 338
           SWT M++ Y+  G                         GF       +   LF  M  S 
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             PD+IT V  LS CS  G ++ G    + + + +         + L D+  + G +K+A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKA 442

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMA-DYIGERL-IELQPSS-SGAYVLSANV 455
           ++V  +MP   R+ +   A++    LHG    A  Y  E + I L P   +   VLSA  
Sbjct: 443 IQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACC 500

Query: 456 HAARGEW--DEFAQVRKK 471
           H    +   D F Q+  K
Sbjct: 501 HGGLVDQGRDYFYQMTSK 518



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 19/222 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++++  ++  A+ LF  M  +++ +V+ + M+ GY K G ++ A ++F+E+ E +V
Sbjct: 296 ALMDMYIKCKNIEAAKILFENM--TKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC-AHNGLIAKLEVISWTT 148
             W +LI G+ +A++  E   LF  M  +  +V      V+ C +    +  L+V  W  
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEM--QASSVAPDKITVVNCLSACSQLGALDVGIW-- 409

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           M   ++++ +T             ++    A++  Y   GN+ +A ++F  MP RN  TW
Sbjct: 410 MHHYVDKHNLT------------MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A+I   A +G   AA+   + M     +P+E T   +L++C
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSAC 499



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 67/285 (23%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
            ++ A  LF+ M++   VS  +M+  + +   L  A  LF  MPE  +++V  +A+I G+
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE--KDVVLWNALIGGF 363

Query: 69  VKAGRVDEARKVFDEIYEG---------------------------------------NV 89
           V+A R  EA  +F E+                                          NV
Sbjct: 364 VQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNV 423

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LI 138
              T+L+  Y K   + +  ++F+ MP   +N ++WT ++ G A +G           +I
Sbjct: 424 ALGTALVDMYAKCGNIKKAIQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMI 481

Query: 139 AKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDAGNM 190
           +   V   I++  + +      +    R+YF QM +K  ++     ++ ++     AG +
Sbjct: 482 SIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFL 541

Query: 191 AQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
            +A EL   MP + +   W A+      +G     E AA KLL L
Sbjct: 542 EEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 225/454 (49%), Gaps = 44/454 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G    AR +F+ I + NV SW  LI GY K   ++  R+LFD MP   +NV +W  
Sbjct: 87  YADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP--ARNVATWNA 144

Query: 128 VVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +V G  ++GL                   +  + S    C GL      +    Y V+  
Sbjct: 145 MVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSG 204

Query: 171 -NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
            ++D+   +++   Y+  G +         +P  N+ + N  I    +NG    A++   
Sbjct: 205 LDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFC 264

Query: 230 LMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQ----ETSLTY---KCT 279
           LM  +    N  T  S +TSC     + +    HALAI+ G ++     TSL +   +C 
Sbjct: 265 LMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCG 324

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C             +S R+  E     D+V  +AMI AY  HGHG +   LF +M+ +G 
Sbjct: 325 CLG-----------DSERVCLE-YSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGA 372

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P+E+TF+ +L  CSH+GL ++G   F LM++ YG +P  +HY+C+ D+L R+G + EA 
Sbjct: 373 EPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAE 432

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++  MP  + D V+   LL AC+      MA+ I ER+IEL P  S +YVL +N+ A  
Sbjct: 433 DLILSMPV-QPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATS 491

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
             W++ ++VR+ M E+ V+K    S +E+KG+ H
Sbjct: 492 SRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 525



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 42/288 (14%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL----- 227
           D    N ++ AY D G+   A  LF  +P+RNV +WN +I  Y +NG    A KL     
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP 135

Query: 228 -----------------------LNLMFQSR---FMPNETTCTSILTSCEGM---LENML 258
                                  L   F  R     P+E    S+   C G+   +    
Sbjct: 136 ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQ 195

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            HA  +R G +++  +    +  +++   GF  D  +A  A   L   ++VS    I   
Sbjct: 196 VHAYVVRSGLDRD--MCVGSSLAHMYMRCGFLRDGEAALRALPSL---NIVSCNTTISGR 250

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + +G        F  M  +G + + +TFV  ++ CS    + +G++   L  +  G    
Sbjct: 251 TQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKT-GVDKV 309

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
               + L  +  R G + ++ RV   +     D V+  A++ A   HG
Sbjct: 310 VPVMTSLVHMYSRCGCLGDSERVC--LEYSGTDLVLCSAMISAYGFHG 355


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 194/360 (53%), Gaps = 28/360 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F    N+D+V W A+I  Y  +G +  A +LF+ MP++N  +W+AMI  YA+ G  
Sbjct: 167 ARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLF 226

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR--------LGFEQ 270
             A++L N M  + F PN       LT+C     + +    HA   R        LG   
Sbjct: 227 REALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG-TA 285

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
              +  KC C            V +A   F+ +  +DV ++T++I   +NHGH      +
Sbjct: 286 LIDMYAKCGC------------VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEM 333

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F RM   G  P+E+TF+ +LS CS  GLVE+G + F  M+  YG +P  +HY CL D+L 
Sbjct: 334 FTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLG 393

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG +++A RVV +MP  E D  VLGALL ACR+HGDV +     E L E      G +V
Sbjct: 394 RAGMLEDAKRVVREMPL-EPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHV 452

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKEV 509
           L +N++A+  +W++ A+VRK M E++VKKV   S IEV G     +A   +M +V + E+
Sbjct: 453 LLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAG--DMSHVFMDEI 510



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 32/268 (11%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G+++ A  LF  +P+R  + WN M+  +         + L   M  + F+PN  T + +L
Sbjct: 61  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 120

Query: 248 TSCEGMLE---NMLAHALAIRLGFE-----QETSLTYKCTCHYV-----FWDWGFQLDVN 294
            +C  + +    +L HA A+RLG+E     Q   L    +C+ +      +D     DV 
Sbjct: 121 QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 180

Query: 295 S----------------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
           +                AR  F+ +  K+ VSW+AMI  Y+  G   +   LF  M  +G
Sbjct: 181 TWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAG 240

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            +P+    VG L+ C+  G +++GR     + R      R    + L D+  + G V+ A
Sbjct: 241 FRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG-TALIDMYAKCGCVETA 299

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHG 426
            RV  +M   +RD     +L+     HG
Sbjct: 300 CRVFDEML--DRDVFAFTSLISGLANHG 325



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 26/220 (11%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++ ++  Y     +D AR++FD     +V +WT++I+GY K+ QV   R+LFD MP   K
Sbjct: 151 QNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP--EK 208

Query: 121 NVVSWTTVVLGCAHNGLIAK-LE----------------VISWTTMCTGLERNAMTKLAR 163
           N VSW+ ++ G A  GL  + LE                ++   T C  L      +   
Sbjct: 209 NAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIH 268

Query: 164 EYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            Y  +  N+   D +   A+I  Y   G +  A  +F+ M  R+V+ + ++I   A +G 
Sbjct: 269 AYVDR--NRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGH 326

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
              A+++   M      PNE T   +L++C   G++E  L
Sbjct: 327 SATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGL 366



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 55/254 (21%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-------------- 52
           +G+V  A +LFDEM + + VS ++MIT + +     +A  LF  M               
Sbjct: 192 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 251

Query: 53  --------------------ESQRNI---VAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                               +  R +   +  +A+ID Y K G V+ A +VFDE+ + +V
Sbjct: 252 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDV 311

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK-LEVISW 146
           +++TSLISG            +F RM  +    N V++  ++  C+  GL+ + L +   
Sbjct: 312 FAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS 371

Query: 147 TTMCTGLE--------------RNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
            T   G+E              R  M + A+    +MP   D     A++ A    G++ 
Sbjct: 372 MTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVE 431

Query: 192 QASELFNLMPQRNV 205
              E    + +R++
Sbjct: 432 LGKETVECLAERSL 445



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 30/266 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           +  A +LFD     D V+  ++I  + ++  +  A  LF  MPE  +N V+ SAMI GY 
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPE--KNAVSWSAMITGYA 221

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA----RQVDEGRRL---FDRMPLKLKNV 122
           + G   EA ++F+++           I G   A      +D+GR +    DR  + L  +
Sbjct: 222 QIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI 281

Query: 123 VSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           +    + +    GC          +   +V ++T++ +GL  +  +  A E F +M N+ 
Sbjct: 282 LGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEG 341

Query: 174 I----VAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPEGAA 224
           +    V +  +++A    G + +   +F  M      +  V  +  ++D   R G    A
Sbjct: 342 VCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDA 401

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSC 250
            +++  M      P+     ++L +C
Sbjct: 402 KRVVREM---PLEPDSYVLGALLNAC 424


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 224/460 (48%), Gaps = 40/460 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A+I   V  G +  ARK+FDE    ++ SW S+I+GY +    DE   L+ +M 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 117 L--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL-------- 161
               + + V+   VV   A    +A    +  +    GL       NA+  +        
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A+  F  M  K +V+W  M+  Y   G +  A  LFN MP+++V  WNA+I  + +   
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-------AHALAIRLGFEQE 271
              A+ L + M  S   P++ T  + L++C   G L+  +        H L + +     
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTA 428

Query: 272 TSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
               Y KC             ++  A   FE +  ++ ++WTA+I   + HG        
Sbjct: 429 LVDMYAKCG------------NIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISY 476

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F+ M+  G  PDEITF+GVLS C H GLV++GR  F  M+  YG  P+ +HYSCL D+L 
Sbjct: 477 FSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLG 536

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA  ++  M P E D VV GAL    R+HG+V M +    +L+EL P   G YV
Sbjct: 537 RAGFLEEAEELIRSM-PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYV 595

Query: 451 LSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           L AN++     W++  +VRK ME R V+K    S IE+ G
Sbjct: 596 LLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNG 635



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 172/438 (39%), Gaps = 61/438 (13%)

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            +D   K+ +     N +SW   I GY ++        L+  M  K   +    T  L  
Sbjct: 103 NLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPL-- 160

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
                           +C G   +        + +Q+  + D+   NA+I   V  G + 
Sbjct: 161 -------------LFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELL 207

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A +LF+    R++ +WN++I+ Y R G    A  L   M +   MP+E T   ++ S  
Sbjct: 208 AARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV-SAS 266

Query: 252 GMLENMLAHALAIRLGFE-QETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVV 309
             LEN+   AL  +L    +E  L           D   +  ++ +A++ FE +  K VV
Sbjct: 267 AQLENL---ALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323

Query: 310 SWTAMILAYSNHG------------------------HGF-------QVFRLFARMLKSG 338
           SWT M++ Y+  G                         GF       +   LF  M  S 
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             PD+IT V  LS CS  G ++ G    + + + +         + L D+  + G +K+A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKA 442

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMA-DYIGERL-IELQPSS-SGAYVLSANV 455
           ++V  +MP   R+ +   A++    LHG    A  Y  E + I L P   +   VLSA  
Sbjct: 443 IQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACC 500

Query: 456 HAARGEW--DEFAQVRKK 471
           H    +   D F Q+  K
Sbjct: 501 HGGLVDQGRDYFYQMTSK 518



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 19/222 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++++  ++  A+ LF  M  +++ +V+ + M+ GY K G ++ A ++F+E+ E +V
Sbjct: 296 ALMDMYIKCKNIEAAKILFENM--TKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC-AHNGLIAKLEVISWTT 148
             W +LI G+ +A++  E   LF  M  +  +V      V+ C +    +  L+V  W  
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEM--QASSVAPDKITVVNCLSACSQLGALDVGIW-- 409

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           M   ++++ +T             ++    A++  Y   GN+ +A ++F  MP RN  TW
Sbjct: 410 MHHYVDKHNLT------------MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A+I   A +G   AA+   + M     +P+E T   +L++C
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSAC 499



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 67/285 (23%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
            ++ A  LF+ M++   VS  +M+  + +   L  A  LF  MPE  +++V  +A+I G+
Sbjct: 306 NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE--KDVVLWNALIGGF 363

Query: 69  VKAGRVDEARKVFDEIYEG---------------------------------------NV 89
           V+A R  EA  +F E+                                          NV
Sbjct: 364 VQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNV 423

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LI 138
              T+L+  Y K   + +  ++F+ MP   +N ++WT ++ G A +G           +I
Sbjct: 424 ALGTALVDMYAKCGNIKKAIQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMI 481

Query: 139 AKLEV---ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDAGNM 190
           +   V   I++  + +      +    R+YF QM +K  ++     ++ ++     AG +
Sbjct: 482 SIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFL 541

Query: 191 AQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
            +A EL   MP + +   W A+      +G     E AA KLL L
Sbjct: 542 EEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLEL 586


>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
 gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 172/580 (29%), Positives = 271/580 (46%), Gaps = 96/580 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-------------- 53
           G+ ++A +LFDEM + + VS  +++T  +RN D+ KA+ +F AMP               
Sbjct: 152 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 211

Query: 54  ---------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
                          S++N+V  ++M+ GY + G V EA ++F E+ E N+ SWT++ISG
Sbjct: 212 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 271

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVV--SWTTVVLGCAHNGLIAKL---------EVIS-- 145
           +       E   LF  M   +  V     T + L  A  GL  +          +VIS  
Sbjct: 272 FAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNG 331

Query: 146 WTTM---------------CTGLERNAMTKLAREYFVQMPN------------------- 171
           W T+                +GL  +A + L   + +Q  N                   
Sbjct: 332 WETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLF 391

Query: 172 ------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
                  D V+W +MI  Y++AG++++A  LF  +  ++  TW  MI    +N     A 
Sbjct: 392 ERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAA 451

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCH 281
            LL+ M +    P  +T  S+L S  G   N+      H +  +     +  L  + +  
Sbjct: 452 SLLSDMVRCGLKPLNST-YSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLV 510

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
            ++   G    +  A   F ++  KD VSW +MI+  S+HG   +   LF  ML SG KP
Sbjct: 511 SMYAKCG---AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKP 567

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           + +TF+GVLS CSH+GL+ +G + F  M   Y  +P  +HY  + D+L RAG++KEA   
Sbjct: 568 NSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEF 627

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE----RLIELQPSSSGAYVLSANVHA 457
           +S + P   DH V GALLG C L+   + A+ I E    RL+EL P ++  +V   NV+A
Sbjct: 628 ISAL-PFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYA 686

Query: 458 ARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
             G  D   ++RK+M  + VKK    S + V G+ +  L+
Sbjct: 687 GLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLS 726



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 217/501 (43%), Gaps = 90/501 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVS----CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G +  A  L D++ Q   ++      S+++ + +   L +A  LF  MPE  RNIV  +A
Sbjct: 56  GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPE--RNIVTCNA 113

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GYVK  R++EA  +F E+ + NV SWT +++      + ++   LFD MP +  NVV
Sbjct: 114 MLTGYVKCRRMNEAWTLFREMPK-NVVSWTVMLTALCDDGRSEDAVELFDEMPER--NVV 170

Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
           SW T+V G   NG + K           +V+SW  M  G   N   + A+  F  M  K+
Sbjct: 171 SWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKN 230

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V W +M+  Y   G++ +A  LF  MP+RN+ +W AMI  +A N     A+ L   M +
Sbjct: 231 VVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKK 290

Query: 234 --SRFMPNETTCTSILTSCEGM------LENMLAHALAIRLGFEQ-------ETSLTYKC 278
                 PN  T  S+  +C G+      L   L HA  I  G+E          SL +  
Sbjct: 291 DVDAVSPNGETLISLAYACGGLGVEFRRLGEQL-HAQVISNGWETVDHDGRLAKSLVHMY 349

Query: 279 --------------------TCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILA 317
                               +C+ +   +    D+  A   FER+++  D VSWT+MI  
Sbjct: 350 ASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDG 409

Query: 318 YSNHGHGFQVFRLFAR-------------------------------MLKSGTKPDEITF 346
           Y   G   + F LF +                               M++ G KP   T+
Sbjct: 410 YLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTY 469

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYG-FKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             +LS       +++G+    ++++    + P     + L  +  + G +++A  + +KM
Sbjct: 470 SVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKM 529

Query: 406 PPHERDHVVLGALLGACRLHG 426
              ++D V   +++     HG
Sbjct: 530 V--QKDTVSWNSMIMGLSHHG 548


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 232/462 (50%), Gaps = 54/462 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK----------ARQVDEGRRL 111
           S+++D Y   GR++ ARKVFDE+ +  V  W  ++  Y +          A +++ GR  
Sbjct: 85  SSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLT 144

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNG-LIAKLEVISWTTMCTGLE------------RNAM 158
            DR        V+  T +  C+  G L    ++ ++    TG              +N  
Sbjct: 145 PDR--------VTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGC 196

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
            + A   F +MP++++V+W  +++ Y  AG + +A  LF+   ++++  W AMI+ Y ++
Sbjct: 197 LEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQH 256

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-------EGMLENMLAHALAIRLGFEQE 271
           G    A+ L   M   +  P+  T  ++LT C       +G L +  A    ++L     
Sbjct: 257 GCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLG 316

Query: 272 TSLT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           T+L     KC              V  +   FER+E +D  +WTA+I   + +G   +  
Sbjct: 317 TALIDMYAKCG------------HVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRAL 364

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M +S  KPD +TF+GVLS C H GLV++GRK F  M   Y  +PR EHYSCL ++
Sbjct: 365 ELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNL 424

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAGQ+ EA +++  +P ++    + GAL+ AC+  G+V+M++ + +R+ +        
Sbjct: 425 LGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDV 484

Query: 449 YVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKG 489
            +L +NV+A    W++  +VR KM    VKK A  S IEVKG
Sbjct: 485 NLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 127/297 (42%), Gaps = 56/297 (18%)

Query: 8   GKVKEATKLFDEMSQ-----------------------------------PDPVSCASMI 32
           G+++ A K+FDEM Q                                   PD V+  + +
Sbjct: 95  GRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTAL 154

Query: 33  TVFLRNHDLPKAEALFRAMPE-SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           T   R  DL     +   M   +  ++   +A++D YVK G ++EA  +F+++   NV S
Sbjct: 155 TACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVS 214

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA------------ 139
           WT+L+SGY  A QVD+ R LF +     K+++ WT ++     +G               
Sbjct: 215 WTTLVSGYAFAGQVDKARLLFHQ--CTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMH 272

Query: 140 -----KLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQA 193
                +  V++  T C  L      +L  ++      K D V   A+I  Y   G++ ++
Sbjct: 273 QIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKS 332

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            E+F  M  R+   W A+I   A NG  G A++L   M +S   P+  T   +L++C
Sbjct: 333 VEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSAC 389



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 29/261 (11%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D    ++++  Y   G +  A ++F+ MPQR V  WN M+  Y R G    A+ L   M 
Sbjct: 80  DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139

Query: 233 QSRFMPNETTCTSILTSC----------------EGM------LENMLAHALAIRLGFEQ 270
           + R  P+  T  + LT+C                +G+      + N L          E+
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEE 199

Query: 271 ETSLTYKCTC-HYVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
             +L  K    + V W      + F   V+ ARL F +   KD++ WTAMI AY  HG  
Sbjct: 200 AVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCF 259

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
            +   LF  M     +PD  T V +L+ C++ G +++G +  +  +     K  A   + 
Sbjct: 260 IEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQG-QLIHQFAEGRNMKLDAVLGTA 318

Query: 385 LADILRRAGQVKEAMRVVSKM 405
           L D+  + G V++++ V  +M
Sbjct: 319 LIDMYAKCGHVEKSVEVFERM 339



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 100/252 (39%), Gaps = 56/252 (22%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S +   G+V +A  LF + ++ D +   +MI  ++++    +A +LFR M   Q     
Sbjct: 219 VSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDR 278

Query: 56  ----------------------------RNI----VAESAMIDGYVKAGRVDEARKVFDE 83
                                       RN+    V  +A+ID Y K G V+++ +VF+ 
Sbjct: 279 FTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFER 338

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI--- 138
           +   +  +WT++I G     Q      LF+ M       + V++  V+  C H GL+   
Sbjct: 339 MEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEG 398

Query: 139 ------------AKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVA-WNAMITAY 184
                        +  V  ++ +   L R      A +    +P NKD +  + A+ITA 
Sbjct: 399 RKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITAC 458

Query: 185 VDAGNMAQASEL 196
              GN+  +  L
Sbjct: 459 KAQGNVKMSERL 470


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 230/460 (50%), Gaps = 53/460 (11%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV-----SWTTV 128
           +D + ++FD I   N + W +++  Y ++   ++   L+  M   +KN V     ++  V
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLM---VKNNVGPDNYTYPLV 135

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDI 174
           V  CA   L    + I    +  G +     +N +  +         AR+ F + P  D 
Sbjct: 136 VQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDS 195

Query: 175 VAWNAMITAYVDAGNMAQASE---LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           V+WN+++  YV  G+M Q  E   LFN M ++++ +W+A+I  Y +NG    A+ +   M
Sbjct: 196 VSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 255

Query: 232 FQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLT-----------YK 277
             +    +E    S+L++C  +       + H L IR+G E   +L             K
Sbjct: 256 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMK 315

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C C            V +A   F  +E K V SW A+I+  + +G   +   +F+ M  +
Sbjct: 316 CGC------------VENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNN 363

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  P+EITF+GVL  C H GLV++GR  F  M   +G +P  +HY C+ D+L RAG + E
Sbjct: 364 GVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 423

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A +++  M P   D    GALLGAC+ HGD  M + +G +LIELQP   G +VL +N+ A
Sbjct: 424 AEKLIESM-PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFA 482

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           ++G+W++  +VR  M+++ V K    S IE  G  H  LA
Sbjct: 483 SKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLA 522



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 39/326 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA---RQVDEGRRLFD 113
           ++  ++ +I+ Y   G + +ARK+FDE    +  SW S+++GY K     QV E  +LF+
Sbjct: 163 DVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFN 222

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERN 156
            M    K++VSW+ ++ G   NG+                 + ++ V+S  + C  L   
Sbjct: 223 EM--DEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 280

Query: 157 AMTKLAREYFVQMPNKDIVAW-NAMITAYVD----AGNMAQASELFNLMPQRNVWTWNAM 211
              K+     ++M  +  V   NA+I  Y D     G +  A E+FN M ++ V +WNA+
Sbjct: 281 KTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNAL 340

Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAH--ALAIRLG 267
           I   A NG    ++ + + M  +  +PNE T   +L +C   G+++    H  ++  + G
Sbjct: 341 IIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHG 400

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGHGFQ 326
            E      Y C    +    G    +N A    E +  A DV +W A++ A   HG    
Sbjct: 401 IEPNVK-HYGCMVDLL----GRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 455

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSD 352
             R+  ++++   +PD   F  +LS+
Sbjct: 456 GERVGRKLIE--LQPDHDGFHVLLSN 479



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 70/264 (26%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE----------- 53
           G  G+V EA KLF+EM + D VS +++I+ + +N    +A  +F  M             
Sbjct: 209 GDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVV 268

Query: 54  ------SQRNIVAESAMIDG------------------------YVKAGRVDEARKVFDE 83
                 +  +IV    MI G                        Y+K G V+ A +VF+ 
Sbjct: 269 SVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNG 328

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL 141
           + E  V SW +LI G      V+    +F  M     + N +++  V+  C H GL+ + 
Sbjct: 329 MEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE- 387

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASEL 196
                                R +F  M  K     ++  +  M+     AG + +A +L
Sbjct: 388 --------------------GRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKL 427

Query: 197 FNLMPQR-NVWTWNAMIDRYARNG 219
              MP   +V TW A++    ++G
Sbjct: 428 IESMPMAPDVATWGALLGACKKHG 451


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/506 (30%), Positives = 253/506 (50%), Gaps = 39/506 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
           +Q GC     EA  +F +M Q    PD  +  S++        L     + +   E+   
Sbjct: 500 AQNGCG---HEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLI 556

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            +    SA I  Y++ G +D+AR +FD++   +V +W ++I G  + R   E   LF +M
Sbjct: 557 SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKL--EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
             +   +   TT +     N L A +  E + W             K    +       D
Sbjct: 617 Q-REGFIPDATTFI-----NILSANVDEEALEWV------------KEVHSHATDAGLVD 658

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   NA++  Y   GN+  A ++F+ M +RNV TW  MI   A++G    A      M +
Sbjct: 659 LRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLR 718

Query: 234 SRFMPNETTCTSILTSC--EGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
              +P+ TT  SIL++C   G LE +   H  A+  G   +  +       +++   G  
Sbjct: 719 EGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALV--HMYAKCG-- 774

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ AR  F+ +  +DV SWT MI   + HG G +    F +M   G KP+  ++V VL
Sbjct: 775 -SIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVL 833

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + CSHAGLV++GR+ F  M++ YG +P  EHY+C+ D+L RAG ++EA   +  MP  E 
Sbjct: 834 TACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPI-EP 892

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D    GALLGAC  +G++ MA++  +  ++L+P S+  YVL +N++AA G+W++   VR 
Sbjct: 893 DDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRS 952

Query: 471 KMERR-VKKVASFSQIEVKGKDHTLL 495
            M+R+ ++K    S IEV  + H+ +
Sbjct: 953 MMQRKGIRKEPGRSWIEVDNRIHSFV 978



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 187/411 (45%), Gaps = 32/411 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVF 81
           D  S  +++   L+  D+  A+ +   + +S  ++N+   + ++  Y++ GR+  AR+VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIA 139
           D++ + N+Y WT++I GY +    ++  R++D+M  +    N +++ +++  C       
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKAC------- 229

Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
                     C  +      K+           D+    A++  YV  G++  A  +F+ 
Sbjct: 230 ----------CCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDK 279

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL--TSCEGMLENM 257
           M +RNV +W  MI   A  G    A  L   M +  F+PN  T  SIL   +  G LE +
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWV 339

Query: 258 L-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H+ A+  G   +  +       +++   G    ++ AR+ F+ +  +D+ SWT MI 
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALV--HMYAKSG---SIDDARVVFDGMTERDIFSWTVMIG 394

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE-KGRKTFNLMSRAYGF 375
             + HG G + F LF +M ++G  P+  T++ +L+  + A     +  K  +  +   GF
Sbjct: 395 GLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF 454

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                  + L  +  + G + +A  V   M   +RD +   A++G    +G
Sbjct: 455 ISDLRIGNALIHMYAKCGSIDDARLVFDGMC--DRDVISWNAMMGGLAQNG 503



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 164/371 (44%), Gaps = 31/371 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++  Y K+G +D+AR VFD + E +++SWT +I G  +  +  E   LF +M     L
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREY-FVQMPNKDIVAWN 178
            N+ ++ +++   A    IA    + W  +        + K A E  F+     D+   N
Sbjct: 419 PNLTTYLSILNASA----IASTSALEWVKV--------VHKHAEEAGFI----SDLRIGN 462

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G++  A  +F+ M  R+V +WNAM+   A+NG    A  +   M Q   +P
Sbjct: 463 ALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVP 522

Query: 239 NETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           + TT  S+L    S + +      H  A+  G   +  +       Y+         ++ 
Sbjct: 523 DSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG-----SIDD 577

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           ARL F++L  + V +W AMI   +    G +   LF +M + G  PD  TF+ +LS    
Sbjct: 578 ARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVD 637

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
              +E  ++  +  + A     R    + L     + G VK A +V   M   ER+    
Sbjct: 638 EEALEWVKEVHSHATDAGLVDLRVG--NALVHTYSKCGNVKYAKQVFDDMV--ERNVTTW 693

Query: 416 GALLGACRLHG 426
             ++G    HG
Sbjct: 694 TMMIGGLAQHG 704



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 196/465 (42%), Gaps = 72/465 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMI-------------TVFL---RNHDLPKAEALFRA 50
           +G + +A  +FD M++ D  S   MI             ++FL   RN  LP        
Sbjct: 368 SGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSI 427

Query: 51  MPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110
           +  S   I + SA+    V     +EA  + D +  GN     +LI  Y K   +D+ R 
Sbjct: 428 LNASA--IASTSALEWVKVVHKHAEEAGFISD-LRIGN-----ALIHMYAKCGSIDDARL 479

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL--------- 161
           +FD M    ++V+SW  ++ G A NG   +   +       GL  ++ T L         
Sbjct: 480 VFDGMC--DRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537

Query: 162 -AREYFVQMPN--------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
            A E+  ++           D    +A I  Y+  G++  A  LF+ +  R+V TWNAMI
Sbjct: 538 DALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMI 597

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE---NMLAHA-----L 262
              A+      A+ L   M +  F+P+ TT  +IL++   E  LE    + +HA     +
Sbjct: 598 GGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLV 657

Query: 263 AIRLGFEQETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
            +R+G       TY KC             +V  A+  F+ +  ++V +WT MI   + H
Sbjct: 658 DLRVG--NALVHTYSKCG------------NVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G G   F  F +ML+ G  PD  T+V +LS C+  G +E  ++  N    A G       
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA-GLVSDLRV 762

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + L  +  + G + +A  V   M   ERD      ++G    HG
Sbjct: 763 GNALVHMYAKCGSIDDARSVFDDMV--ERDVFSWTVMIGGLAQHG 805


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 214/401 (53%), Gaps = 32/401 (7%)

Query: 115 MPLKLKNVVSWTTVVLG-CAHN-GLIAKLEVISWT--TMCTGLERNAMTKLAREYFVQMP 170
           +P  LK+    + V +G C H  GL   LE   +   ++     +  +   AR+ F +M 
Sbjct: 110 LPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI 169

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +D+ +WNA+I  Y+  G +  A +LF  M  RN+ +W AMI  Y +NG    A+ L + 
Sbjct: 170 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 229

Query: 231 MFQ--SRFMPNETTCTSILTSC-------EGMLENMLAHALAIRLGFEQETSLT---YKC 278
           M Q  S   PN  T  S+L +C        G   +  A+ + + L    +T+L     KC
Sbjct: 230 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 289

Query: 279 TCHYVFWDWGFQLDVNSARLAFERL--EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                         +  AR  F+ +    K++++W  MI AY++HG G +   +F  ML+
Sbjct: 290 ------------YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLR 337

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G +PD +TF+G+LS CSH+GL++ G   FN M   +  +PR EHY+C+ D+L RAG++ 
Sbjct: 338 AGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLV 397

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA  ++S+M P +    V GALL ACR H ++ +A+    RL  L+P +SG YVL +N++
Sbjct: 398 EAKELISQM-PMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLY 456

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           A  G W+E  ++R  ++ + +KK    S IE+ GK H  + 
Sbjct: 457 AEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMG 497



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 29/241 (12%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           AS+I ++++   +  A  LF  M    R++ + +A+I GY+K G +  A  +F+ +   N
Sbjct: 146 ASLIDMYVKCGVIGDARKLFDKM--IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRN 203

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + SWT++ISGY +    ++   LFD M      +K  N V+  +V+  CA +  + +   
Sbjct: 204 IVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMK-PNWVTIVSVLPACAQSAALERGRR 262

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ- 202
           I       GL  N+  +                  A+   Y    ++ +A   F+++ Q 
Sbjct: 263 IHDFANGIGLHLNSSVQ-----------------TALAGMYAKCYSLVEARCCFDMIAQN 305

Query: 203 -RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLA 259
            +N+  WN MI  YA +G    A+ +   M ++   P+  T   +L+ C   G+++  L 
Sbjct: 306 GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLN 365

Query: 260 H 260
           H
Sbjct: 366 H 366



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 63/266 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A KLFD+M   D  S  ++I  +++  ++  AE LF  M    RNIV+ +AMI G
Sbjct: 156 GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERM--EHRNIVSWTAMISG 213

Query: 68  YVKAGRVDEARKVFDEIYEG---------------------------------------- 87
           Y + G  ++A  +FDE+ +                                         
Sbjct: 214 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 273

Query: 88  -NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----- 141
            N    T+L   Y K   + E R  FD +    KN+++W T++   A +G   +      
Sbjct: 274 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 333

Query: 142 ---------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDA 187
                    + +++  + +G   + +      +F  M     V      +  ++     A
Sbjct: 334 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 393

Query: 188 GNMAQASELFNLMP-QRNVWTWNAMI 212
           G + +A EL + MP Q     W A++
Sbjct: 394 GRLVEAKELISQMPMQAGPSVWGALL 419


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 225/442 (50%), Gaps = 29/442 (6%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   S +++ YV  G ++   KVF+ I + NV +WTSLI+G+    Q  E  RLF  M 
Sbjct: 139 DVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDME 198

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC----TG-LERNAMTKLAREYFVQMPN 171
            +            G   N  I     ++    C    TG L  + + +L  + F     
Sbjct: 199 NE------------GVEPNE-ITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSC 245

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            +++   A++  Y   G +  A  LF+ MPQRN+  WN+MI  Y++ G    A++L   M
Sbjct: 246 FNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDM 305

Query: 232 FQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
             + F+PN+ T  S++++C  M         HA A+R  F +  ++       Y      
Sbjct: 306 EMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAG-- 363

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFV 347
              D ++A   F +L  KDV++WT MI   +  G G +   +F RM +     PD+IT++
Sbjct: 364 ---DADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYI 420

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL  CSH GLVE+G+K F  M+  YG +P  EHY C+ D+L RAG  KEA  ++ KMP 
Sbjct: 421 AVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPT 480

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + +  +L ++L  C ++G+V +A+ +   ++EL+ SSSG YVL +N+HA    W E   
Sbjct: 481 -QPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKL 539

Query: 468 VRKKMERR-VKKVASFSQIEVK 488
            R  ++ + + K    S +E+K
Sbjct: 540 ARDMLKHKNIGKTLGNSFVEIK 561



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 40/327 (12%)

Query: 172 KDIVAWNAMI--TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           K+I+  + +I   A  + G++  A  +F+ + QR V+ WN+MI  Y   G +  A+ +  
Sbjct: 35  KNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYE 94

Query: 230 LMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFW 285
            M +  F P+  T   +L  C   + ++     H   ++ GFE +    Y  +C   ++ 
Sbjct: 95  EMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELD---VYTSSCLLNMYV 151

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
             G   D+NS    FE +   +VV+WT++I  + N+    +  RLF  M   G +P+EIT
Sbjct: 152 SCG---DLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEIT 208

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--------LADILRRAGQVKE 397
               L+  +    +  G+   + + R  GF P  +  SC        + D+  + G++  
Sbjct: 209 MTTALAAAARCRDIHTGKLVHDRL-RQLGFDP-FDTNSCFNVILATAIMDMYAKCGKLVT 266

Query: 398 AMRVVSKMPPHERDHVVLGALLG----------ACRLHGDVRMADYIGERLIELQPSSSG 447
           A  +  KMP  +R+ VV  +++           A RL  D+ MA ++  +   L   S+ 
Sbjct: 267 ARNLFDKMP--QRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISAC 324

Query: 448 AYV------LSANVHAARGEWDEFAQV 468
            ++       S +  A R  + EF  +
Sbjct: 325 THMGFRSTGRSLHARALRASFHEFVAI 351



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 128/315 (40%), Gaps = 72/315 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G +    K+F+ + + + V+  S+I  F+ N    +A  LF+ M                
Sbjct: 154 GDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTAL 213

Query: 52  ----------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                         S  N++  +A++D Y K G++  AR +FD+
Sbjct: 214 AAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDK 273

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL 141
           + + N+  W S+IS Y +  +  E  RLF  M +   + N  ++ +V+  C H G  +  
Sbjct: 274 MPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRS-- 331

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                    TG  R+   +  R  F +     +    A++  Y  AG+   A ++F+ + 
Sbjct: 332 ---------TG--RSLHARALRASFHEF----VAIGTALMDMYAKAGDADTALKIFSKLR 376

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAH 260
           +++V  W  MI   A  G    A+ +   M  ++   P++ T  ++L +C        +H
Sbjct: 377 KKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWAC--------SH 428

Query: 261 ALAIRLGFEQETSLT 275
              +  G +Q TS+T
Sbjct: 429 LGLVEEGQKQFTSMT 443



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 4/168 (2%)

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           N  T  S L  C+ M E    H+L I     +       C+    F       D+  AR 
Sbjct: 4   NYYTVMSFLEKCKTMKELKQIHSLMITTSVVKNI---IPCSRLIDFCANSELGDIEYART 60

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+++  + V  W +MI  Y N G  F    ++  M + G  PD  TF  VL  CS   L
Sbjct: 61  VFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDL 120

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +  G+   N + +  GF+      SCL ++    G +   ++V   +P
Sbjct: 121 LVYGQSVHNRIVKT-GFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 167



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 60/254 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------------- 48
           GK+  A  LFD+M Q + V   SMI+ + +     +A  LF                   
Sbjct: 262 GKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVI 321

Query: 49  -----------------RAMPESQRNIVA-ESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                            RA+  S    VA  +A++D Y KAG  D A K+F ++ + +V 
Sbjct: 322 SACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVM 381

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +WT++ISG     +  E   +F RM  + +   + +++  V+  C+H GL+ +       
Sbjct: 382 AWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEE------- 434

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                  +   T +   Y ++ P  +   +  MI     AG+  +A EL   MP +    
Sbjct: 435 ------GQKQFTSMTEVYGIE-PTME--HYGCMIDLLSRAGHSKEAEELLMKMPTQP--- 482

Query: 208 WNAMIDRYARNGPE 221
            NA I     NG E
Sbjct: 483 -NATILSSILNGCE 495


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/539 (28%), Positives = 265/539 (49%), Gaps = 44/539 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA ++FDE+ +PD V+ +SM++ F +N    +A   FR M  +         +I  
Sbjct: 91  GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 150

Query: 68  YVKAGRVDEARK-------VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                ++  +R        V    +  ++    SL++ Y K+R   E   LF    +  K
Sbjct: 151 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM--IAEK 208

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL------AREYFVQMPNK-- 172
           +V+SW+TV+     NG  A+  ++    M  G E N  T L      A  + ++   K  
Sbjct: 209 DVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTH 268

Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                     ++    A++  Y+   +  +A  +F+ +P+++V +W A+I  +  NG   
Sbjct: 269 ELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAH 328

Query: 223 AAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYKC 278
            +++  ++M  ++   P+      +L SC   G LE     H+  I+ GF+    +    
Sbjct: 329 RSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASL 388

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          + +A   F  +  KD V WT++I  Y  HG G +    F  M+KS 
Sbjct: 389 VELYSRCG-----SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSS 443

Query: 339 -TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KP+E+TF+ +LS CSHAGL+ +G + F LM   Y   P  EHY+ L D+L R G +  
Sbjct: 444 EVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDT 503

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ +  +MP       +LG LLGACR+H +  MA+ + ++L EL+ + +G Y+L +NV+ 
Sbjct: 504 AIEITKRMPFSPTPQ-ILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYG 562

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            +GEW+   ++R  +++R +KK  + S IE++ K H  +A     P +E  Y +LKE+D
Sbjct: 563 VKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELD 621



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 173/370 (46%), Gaps = 28/370 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S++I  Y+K GR+ EA ++FDE+ + ++ +W+S++SG+ K     +    F RM +    
Sbjct: 81  SSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM---- 136

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                      A +    ++ +I+  + CT L  + + +    + ++   + D+   N++
Sbjct: 137 -----------ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSL 185

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y  +    +A  LF ++ +++V +W+ +I  Y +NG    A+ + N M      PN 
Sbjct: 186 LNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNV 245

Query: 241 TTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T   +L +C     + +    H LAIR G E E  ++      Y+            A 
Sbjct: 246 ATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC-----FSPEEAY 300

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHA 356
             F R+  KDVVSW A+I  ++ +G   +    F+ M L++ T+PD I  V VL  CS  
Sbjct: 301 AVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSEL 360

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G +E+  K F+     YGF       + L ++  R G +  A +V + +    +D VV  
Sbjct: 361 GFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL--KDTVVWT 417

Query: 417 ALLGACRLHG 426
           +L+    +HG
Sbjct: 418 SLITGYGIHG 427



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 155/343 (45%), Gaps = 26/343 (7%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           ++Y W +L+    + +Q +E    F  M    +   ++T  V   A      +L  +++ 
Sbjct: 5   SLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKA----CGELREVNYG 60

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            M  G  +  +T             D+   +++I  Y+  G M +A  +F+ + + ++ T
Sbjct: 61  EMIHGFVKKDVT----------LGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVT 110

Query: 208 WNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
           W++M+  + +NG    A++    M   S   P+  T  +++++C  +  + L    H   
Sbjct: 111 WSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFV 170

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           IR GF  + SL       Y      F+  VN     F+ +  KDV+SW+ +I  Y  +G 
Sbjct: 171 IRRGFSNDLSLVNSLLNCYA-KSRAFKEAVN----LFKMIAEKDVISWSTVIACYVQNGA 225

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   +F  M+  GT+P+  T + VL  C+ A  +E+GRKT  L  R  G +   +  +
Sbjct: 226 AAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRK-GLETEVKVST 284

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L D+  +    +EA  V S++P   +D V   AL+    L+G
Sbjct: 285 ALVDMYMKCFSPEEAYAVFSRIP--RKDVVSWVALISGFTLNG 325



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---N 256
           M +R+++ WN ++   +R       +   + MF+    P+  T    L +C  + E    
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 257 MLAHALA---IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            + H      + LG    + L    +  Y++   G  ++   A   F+ LE  D+V+W++
Sbjct: 61  EMIHGFVKKDVTLG----SDLYVGSSLIYMYIKCGRMIE---ALRMFDELEKPDIVTWSS 113

Query: 314 MILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           M+  +  +G  +Q    F RM + S   PD +T + ++S C+       GR     + R 
Sbjct: 114 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR 173

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            GF       + L +   ++   KEA+ +
Sbjct: 174 -GFSNDLSLVNSLLNCYAKSRAFKEAVNL 201


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/458 (31%), Positives = 231/458 (50%), Gaps = 41/458 (8%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y   G+++ A+KVFDEI E +V SW  LIS Y   R+ ++   +F RM  +        T
Sbjct: 159 YGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEAT 218

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL----------------AREYFVQMPN 171
           VV   +   ++   EV          E    TK+                AR  F +M N
Sbjct: 219 VVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGN 278

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           K+++ W +M++ Y   G++ +A ELF   P R++  W AMI+ Y +      A+KL   M
Sbjct: 279 KNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKM 338

Query: 232 FQSRFMPNETTCTSILTSC--EGMLE-----NMLAHALAIRLGFEQETSLT---YKCTCH 281
              R  P+     ++L  C   G LE     +   H  +I L     T+L     KC C 
Sbjct: 339 QIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGC- 397

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      V  A   F  ++ +D  SWT++I   + +G   +    F++M ++G +P
Sbjct: 398 -----------VEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRP 446

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D+ITF+GVL+ C+H GLVE+GR+ F+ M++ Y  +P++EHYSCL D+L RAG + EA  +
Sbjct: 447 DDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELL 506

Query: 402 VSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
           +  +P    D VV    +LL ACR +G+++M++ +G RL  ++   S  + L A+V+A+ 
Sbjct: 507 LEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASA 566

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             W++   VR+KM E  ++K    S IEV G  H  + 
Sbjct: 567 NRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMV 604



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 59/309 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           +G  GK++ A K+FDE+ + D VS   +I+ ++ +     A A+FR M            
Sbjct: 159 YGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEAT 218

Query: 52  -----------------PESQRNIVAE--------SAMIDGYVKAGRVDEARKVFDEIYE 86
                             E  R + AE        +A++D Y K G VD+AR +FDE+  
Sbjct: 219 VVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGN 278

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA------- 139
            NV  WTS++SGY     +DE R LF+R P  ++++V WT ++ G     L         
Sbjct: 279 KNVICWTSMVSGYASNGSLDEARELFERSP--VRDIVLWTAMINGYVQFNLFDEALKLFR 336

Query: 140 KLEV-------ISWTTMCTGLERNAMTKLAREYFVQMPNKDI----VAWNAMITAYVDAG 188
           K+++           T+  G  +    +  +     +    I    V   A++  Y   G
Sbjct: 337 KMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCG 396

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            + +A E+F  M +R+  +W ++I   A NG    A+   + M ++ F P++ T   +LT
Sbjct: 397 CVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLT 456

Query: 249 SCE--GMLE 255
           +C   G++E
Sbjct: 457 ACNHGGLVE 465



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 46/275 (16%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
           D    N+++  Y   G M  A ++F+ +P+R+V +WN +I  Y  +     A+ +   M 
Sbjct: 148 DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMR 207

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS---------LTYKCTC-- 280
            +S    +E T  S L++C  +    +   +   +  E E +         +  KC C  
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVD 267

Query: 281 ------------HYVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
                       + + W      +     ++ AR  FER   +D+V WTAMI  Y     
Sbjct: 268 KARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNL 327

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR-------KTFNLMSRAYGFK 376
             +  +LF +M     +PD    V +L  C+  G +E+G+       +    + R  G  
Sbjct: 328 FDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVG-- 385

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
                 + L D+  + G V++A+ V  +M   ERD
Sbjct: 386 ------TALVDVYAKCGCVEKALEVFYEM--KERD 412



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  +   +    +  +N MI   A++      + L + + +    P+  T   + 
Sbjct: 64  GSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVF 123

Query: 248 TS--CEG-MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +  C G ++E    H   ++ GF+        C C+ V   +G    +  A+  F+ + 
Sbjct: 124 KAMGCLGKVVEGEKVHGYVVKSGFDA-------CVCNSVMGMYGALGKMEVAKKVFDEIP 176

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCS 354
            +DVVSW  +I +Y  H        +F RM + S  K DE T V  LS CS
Sbjct: 177 ERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACS 227



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 42/236 (17%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---- 56
            S +   G + EA +LF+     D V   +MI  +++ +   +A  LFR M + QR    
Sbjct: 288 VSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKM-QIQRLRPD 346

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLF 112
           N +  + ++ G  + G +++ + +   I+E ++       T+L+  Y K   V++   +F
Sbjct: 347 NFILVT-LLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVF 405

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN- 171
             M  K ++  SWT+V+ G A NG                     MT  A ++F QM   
Sbjct: 406 YEM--KERDTASWTSVIYGLAVNG---------------------MTSKALDFFSQMEEA 442

Query: 172 ---KDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNG 219
               D + +  ++TA    G + +    F+ M      Q     ++ +ID   R G
Sbjct: 443 GFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAG 498



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 27/210 (12%)

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           R   ++  C  +L SCE M      HA   R+G +       K     +F     +  + 
Sbjct: 11  RIRLSKNYCVDLLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIV---LFCTDPSRGSIR 67

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A      +++  +V +  MI A +   +  +V  LF+ + K G  PD  T   V     
Sbjct: 68  YAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMG 127

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD----ILRRAGQVKEAMRVVSKMPPHER 410
             G V +G K        +G+  ++   +C+ +    +    G+++ A +V  ++P  ER
Sbjct: 128 CLGKVVEGEKV-------HGYVVKSGFDACVCNSVMGMYGALGKMEVAKKVFDEIP--ER 178

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIE 440
           D V    L+           + Y+G R  E
Sbjct: 179 DVVSWNVLI-----------SSYVGHRKFE 197


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/500 (30%), Positives = 251/500 (50%), Gaps = 36/500 (7%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAE 61
           G + EA  L+  M+    +PD  +   ++    R+ DL   E  +R   +     ++   
Sbjct: 84  GAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG 143

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A+++ Y K G++DEA +VFD++   ++  WT++I+G  +  Q  E   ++ +M    K 
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH---KK 200

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-KDIVAWNAM 180
            V    VV+     GLI           CT L  + M      Y ++     D++   ++
Sbjct: 201 RVEGDGVVM----LGLIQA---------CTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSL 247

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G++  AS +F  M  +NV +W+A+I  +A+NG  G A++L+  M    + P+ 
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307

Query: 241 TTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSA 296
            +  S+L +C   G L+     H   +R        L + C       D   +   ++ A
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYIVR-------RLHFDCVSSTAVIDMYSKCGSLSFA 360

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+++  +D +SW A+I +Y  HG G +   LF +M ++  KPD  TF  +LS  SH+
Sbjct: 361 RTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHS 420

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLVEKGR  F++M   Y  +P  +HY+C+ D+L RAG+V+EA  ++  M   E    +  
Sbjct: 421 GLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMIT-EPGIAIWV 479

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL  C  HG   + +   ++++EL P   G Y L +N  A    WDE A+VRK M++  
Sbjct: 480 ALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTG 539

Query: 476 VKKVASFSQIEVKGKDHTLL 495
           +KKV  +S +EV GK H  L
Sbjct: 540 MKKVPGYSVMEVNGKLHAFL 559



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 34/208 (16%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I +Y   G++  A ++F+  PQ  V  WNAMI  Y+R G    A+ L + M      P+
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV------ 293
            +T T +L +C          +L +R G E     T++        D G+  DV      
Sbjct: 105 SSTYTVVLKAC--------TRSLDLRSGEE-----TWRQAV-----DQGYGDDVFVGAAV 146

Query: 294 ----------NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                     + A   F+++  +D+V WT MI   + +G   +   ++ +M K   + D 
Sbjct: 147 LNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDG 206

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           +  +G++  C+  G  + G      M R
Sbjct: 207 VVMLGLIQACTTLGHSKMGLSIHGYMIR 234


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/455 (33%), Positives = 231/455 (50%), Gaps = 55/455 (12%)

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGC 132
           EARK+FD  +  ++ SW +LI GY +     E   +F RM        + V+   VV G 
Sbjct: 173 EARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGS 232

Query: 133 AH----------------NGLIAKLE----VISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           A                 +G+   +     V+     C  LER      A+  F  +  K
Sbjct: 233 AQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLER------AKSVFEGIDKK 286

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            IV+W  MI  Y   G M  A ++F+ MP+R+V+ WNA++  Y +      A++L + M 
Sbjct: 287 TIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQ 346

Query: 233 QSRFMPNETTCTSILTSCE--GMLE-NMLAH--------ALAIRLGFEQETSLTYKCTCH 281
           ++   P++ T  ++L++C   G LE  M  H        +L++ LG      +  KC   
Sbjct: 347 EAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLG-TNLVDMYSKCG-- 403

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                     ++  A   F+ +  K+ ++WTAMI   +NHGH     + F RM++ G +P
Sbjct: 404 ----------NIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQP 453

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           DEITF+GVLS C HAGLV++G++ F+LM   Y  + + +HYSC+ D+L RAG + EA  +
Sbjct: 454 DEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHL 513

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           V+ M P E D VV GAL  ACR+HG++ + +    +L+EL P  SG YVL AN++A    
Sbjct: 514 VNTM-PMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANM 572

Query: 462 WDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
             +  +VR  M    V+KV   S IE+ G  H  +
Sbjct: 573 RKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFI 607



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 17/220 (7%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++ ++++  DL +A+++F  +   ++ IV+ + MI GY + G +D+ARKVFDE+ E +V+
Sbjct: 263 VMDMYIKCGDLERAKSVFEGI--DKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVF 320

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            W +L++GY + ++  E  RLF  M   +      T V L  A + L A LE+  W    
Sbjct: 321 PWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGA-LEMGMWVHHY 379

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
               R +++ +     V M              Y   GN+ +A  +F  +P++N  TW A
Sbjct: 380 IDRRRVSLSVMLGTNLVDM--------------YSKCGNIEKAIRVFKEIPEKNALTWTA 425

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           MI   A +G    A+K    M +    P+E T   +L++C
Sbjct: 426 MISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSAC 465



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 150/347 (43%), Gaps = 46/347 (13%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-N 229
           + D+   NA +       +MA+A +LF+    R++ +WN +I  Y R G    A+++   
Sbjct: 152 HADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWR 211

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           ++      P+E T   +++    + +  L   L    G+ +   +        V  D   
Sbjct: 212 MVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLH---GYVESHGVRCTVRLMNVVMDMYI 268

Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHG-------------------------- 322
           +  D+  A+  FE ++ K +VSWT MI+ Y+  G                          
Sbjct: 269 KCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTG 328

Query: 323 -----HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
                 G +  RLF  M ++  +PD+IT V +LS CS  G +E G    + + R      
Sbjct: 329 YVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR-VSL 387

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
                + L D+  + G +++A+RV  ++P  E++ +   A++     HG   +A    +R
Sbjct: 388 SVMLGTNLVDMYSKCGNIEKAIRVFKEIP--EKNALTWTAMISGLANHGHADVAIKYFQR 445

Query: 438 LIE--LQPSS-SGAYVLSANVHAAR-GEWDEFAQV---RKKMERRVK 477
           +IE  LQP   +   VLSA  HA    E  EF  +   +  +ER++K
Sbjct: 446 MIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMK 492



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 73/278 (26%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           +QFG    + +A K+FDEM + D     +++T +++     +A  LF  M E+       
Sbjct: 299 AQFGL---MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDI 355

Query: 55  -------------------------QRNIVAESAM-----IDGYVKAGRVDEARKVFDEI 84
                                     R  V+ S M     +D Y K G +++A +VF EI
Sbjct: 356 TMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEI 415

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLE 142
            E N  +WT++ISG       D   + F RM  L L+ + +++  V+  C H GL+    
Sbjct: 416 PEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLV---- 471

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELF 197
                            K  +E+F  M +K      +  ++ M+     AG + +A  L 
Sbjct: 472 -----------------KEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLV 514

Query: 198 NLMP-QRNVWTWNAMIDRYARNG----PEGAAMKLLNL 230
           N MP + +   W A+      +G     E AAMKL+ L
Sbjct: 515 NTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVEL 552


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 249/485 (51%), Gaps = 47/485 (9%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           +SCA++ ++   +H       LF+    S  +     ++I  Y + G V  ARKVFDEI 
Sbjct: 130 LSCANLASL---SHACAAHSLLFKLALHSDPHTA--HSLITAYARCGLVASARKVFDEIP 184

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLE 142
             +  SW S+I+GY KA    E   +F  M  +     + +S  +++  C   G +  LE
Sbjct: 185 HRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGAC---GELGDLE 241

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLM 200
           +  W                 E FV      + ++  +A+I+ Y   G +  A  +F+ M
Sbjct: 242 LGRWV----------------EGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGM 285

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260
             R+V TWNA+I  YA+NG    A+ L + M +     N+ T T++L++C        A 
Sbjct: 286 AARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSAC--------AT 337

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWD------WGFQLDVNSARLAFERLEAKDVVSWTAM 314
             A+ LG + +   + +   H +F        +     +++A+  F+ +  K+  SW AM
Sbjct: 338 IGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAM 397

Query: 315 ILAYSNHGHGFQVFRLFARMLK--SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           I A + HG   +   LF  M     G +P++ITFVG+LS C HAGLV++G + F++MS  
Sbjct: 398 ISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTL 457

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           +G  P+ EHYSC+ D+L RAG + EA  ++ KM P + D V LGALLGACR   +V + +
Sbjct: 458 FGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKM-PEKPDKVTLGALLGACRSKKNVDIGE 516

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKD 491
            +   ++E+ PS+SG Y++S+ ++A    W++ A++R  M ++ + K    S IEV+   
Sbjct: 517 RVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHL 576

Query: 492 HTLLA 496
           H   A
Sbjct: 577 HEFHA 581



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 157/391 (40%), Gaps = 68/391 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID- 66
           G V  A K+FDE+   D VS  SMI  + +     +A  +FR M         E +++  
Sbjct: 171 GLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSL 230

Query: 67  -------GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
                  G ++ GR  E   V +     N Y  ++LIS Y K  +++  RR+FD M    
Sbjct: 231 LGACGELGDLELGRWVEGF-VVERGMTLNSYIGSALISMYAKCGELESARRIFDGM--AA 287

Query: 120 KNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMTKLA 162
           ++V++W  V+ G A NG+                   K+ + +  + C  +    + K  
Sbjct: 288 RDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQI 347

Query: 163 REYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
            EY  Q     DI    A+I  Y  +G++  A  +F  MPQ+N  +WNAMI   A +G  
Sbjct: 348 DEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKA 407

Query: 222 GAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
             A+ L   M        PN+ T   +L++C                             
Sbjct: 408 KEALSLFQHMSDEGGGARPNDITFVGLLSAC----------------------------- 438

Query: 280 CHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            H    D G++L D+ S            +  ++ M+   +  GH ++ + L  +M +  
Sbjct: 439 VHAGLVDEGYRLFDMMSTLFGL----VPKIEHYSCMVDLLARAGHLYEAWDLIRKMPE-- 492

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            KPD++T   +L  C     V+ G +   ++
Sbjct: 493 -KPDKVTLGALLGACRSKKNVDIGERVMRMI 522



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 57/243 (23%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +   G+++ A ++FD M+  D ++  ++I+ + +N    +A  LF  M E        
Sbjct: 267 SMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKI 326

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                         Q +I   +A+ID Y K+G +D A++VF ++
Sbjct: 327 TLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDM 386

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK----LKNVVSWTTVVLGCAHNGLIAK 140
            + N  SW ++IS      +  E   LF  M  +      N +++  ++  C H GL+  
Sbjct: 387 PQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVD- 445

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
                        E   +  +    F  +P   I  ++ M+     AG++ +A +L   M
Sbjct: 446 -------------EGYRLFDMMSTLFGLVPK--IEHYSCMVDLLARAGHLYEAWDLIRKM 490

Query: 201 PQR 203
           P++
Sbjct: 491 PEK 493


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/564 (27%), Positives = 268/564 (47%), Gaps = 84/564 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
            S +G  G ++ A  +FD++      D VS  S+++ ++   D   A ALF  M      
Sbjct: 301 VSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLM 360

Query: 56  ------------------------------------RNIVAESAMIDGYVKAGRVDEARK 79
                                                ++   +A++D Y K G+++EA K
Sbjct: 361 SPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANK 420

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNG 136
           VF  +   +V SW ++++GY +A +++    LF+RM    ++L +VV+WT V+ G A  G
Sbjct: 421 VFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIEL-DVVTWTAVITGYAQRG 479

Query: 137 LIAK-----------------LEVISWTTMCTGLERNAMTKLAREYFVQM------PN-- 171
              +                 + ++S  + C  +      K    Y ++       P+  
Sbjct: 480 QGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPG 539

Query: 172 -KDIVAWNAMITAYVDAGNMAQASELFN-LMPQ-RNVWTWNAMIDRYARNGPEGAAMKLL 228
             D+   N +I  Y    +   A ++F+ + P+ R+V TW  MI  YA++G    A++L 
Sbjct: 540 ADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLF 599

Query: 229 NLMFQ--SRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYV 283
           + MF+      PN+ T +  L +C  +         HA  +R  +         C     
Sbjct: 600 SGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDM- 658

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
              +    DV++A++ F+ +  ++ VSWT+++  Y  HG G    R+F  M K    PD 
Sbjct: 659 ---YSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDG 715

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF+ VL  CSH+G+V+ G   FN MS+ +G  P  EHY+C+ D+  RAG++ EAM++++
Sbjct: 716 ITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLIN 775

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +M P E   VV  ALL ACRLH +V + ++   RL+EL+  + G+Y L +N++A    W 
Sbjct: 776 EM-PMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWK 834

Query: 464 EFAQVRKKMERR-VKKVASFSQIE 486
           + A++R  M+R  +KK    S I+
Sbjct: 835 DVARIRYTMKRTGIKKRPGCSWIQ 858



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 165/433 (38%), Gaps = 94/433 (21%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEI-YEG--NVYSWTSLISGYFKARQVDEGRRLFD 113
           N+   +A++  Y K G +  A  +FD++ + G  ++ SW S++S Y  A   +    LF 
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 114 RMP---LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +M    L   +V+S   ++  CA      +   +   ++ +GL                 
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLV---------------- 396

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D+   NA++  Y   G M +A+++F  M  ++V +WNAM+  Y++ G    A+ L   
Sbjct: 397 -DDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFER 455

Query: 231 MFQSRF-----------------------------------MPNETTCTSILTSC---EG 252
           M +                                       PN  T  S+L++C     
Sbjct: 456 MTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGA 515

Query: 253 MLENMLAHALAIRLGFEQE---------------TSLTYKCTCHYVFWDWGFQLDVNSAR 297
           +L     H  AI+     +                 +  KC    V            AR
Sbjct: 516 LLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV------------AR 563

Query: 298 LAFERLEAK--DVVSWTAMILAYSNHGHGFQVFRLFARMLK--SGTKPDEITFVGVLSDC 353
             F+ +  K  DVV+WT MI  Y+ HG      +LF+ M K     KP++ T    L  C
Sbjct: 564 KMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC 623

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +  GR+    + R +         +CL D+  ++G V  A  V   MP  +R+ V
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP--QRNAV 681

Query: 414 VLGALLGACRLHG 426
              +L+    +HG
Sbjct: 682 SWTSLMTGYGMHG 694



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 159/405 (39%), Gaps = 70/405 (17%)

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKLEVIS 145
           T+LI  Y  +        L +R+P    +V  W  ++    H G       L  +++ + 
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 146 WTT----------MCTGLERNAM-----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           WT            C  L   ++       ++R  F      ++   NA+++ Y   G +
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFA----SNVFVCNAVVSMYGKCGAL 310

Query: 191 AQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSI 246
             A  +F+ +  R +    +WN+++  Y        A+ L + M     M P+  +  +I
Sbjct: 311 RHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNI 370

Query: 247 LTSCEGM---LENMLAHALAIRLGFEQE-------TSLTYKC----TCHYVFWDWGFQLD 292
           L +C  +   L     H  +IR G   +         +  KC      + VF    F+  
Sbjct: 371 LPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDV 430

Query: 293 VN----------SARLA-----FERLEAK----DVVSWTAMILAYSNHGHGFQVFRLFAR 333
           V+          + RL      FER+  +    DVV+WTA+I  Y+  G G +   +F +
Sbjct: 431 VSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT----FNLMSRAYGFKPRAEHYSC---LA 386
           M   G++P+ +T V +LS C   G +  G++T       +    G  P A+       L 
Sbjct: 491 MCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLI 550

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           D+  +    + A ++   + P +RD V    ++G    HGD   A
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNA 595



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 124/306 (40%), Gaps = 24/306 (7%)

Query: 180 MITAYVDAGNMAQASELFNLMPQR--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +I  Y+ + + A A  L   +P    +V+ WN +I R    G       L   M    + 
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256

Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           P+  T   +  +C  +    L    HA   R GF     +     C+ V   +G    + 
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFV-----CNAVVSMYGKCGALR 311

Query: 295 SARLAFERL---EAKDVVSWTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVL 350
            A   F+ L     +D+VSW +++ AY           LF +M  +    PD I+ V +L
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             C+      +GR+      R+ G        + + D+  + G+++EA +V  +M    +
Sbjct: 372 PACASLAASLRGRQVHGFSIRS-GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMK--FK 428

Query: 411 DHVVLGALLG----ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
           D V   A++     A RL   + + + + E  IEL   +  A +     +A RG+  E  
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITG---YAQRGQGCEAL 485

Query: 467 QVRKKM 472
            V ++M
Sbjct: 486 DVFRQM 491


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 251/487 (51%), Gaps = 29/487 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    +++V+ +A++D Y ++G +D AR+V D + E N 
Sbjct: 290 SLITLYLRMGDAAAARKVFDEM--DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 347

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI+ + +     E  +L+ +M       N+  +++V+  CA    +     I   
Sbjct: 348 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR 407

Query: 148 TMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           ++  G   N                 + A+  F  +P K+IV WN++ + Y   G M +A
Sbjct: 408 SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEA 467

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
             LF  MP RN+ +WN +I  YA+N     A++  N M  S  +P E T +S+L +C   
Sbjct: 468 MYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANL 527

Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
             ++   +AHA  I+LG E+   +    +  Y         D+ S++  F ++  ++ V+
Sbjct: 528 CSLVTGKMAHAKTIKLGMEESIFIGTALSDMY-----AKSGDLQSSKRMFYQMPERNDVT 582

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTAMI   + +G   +   LF  M+ +G  P+E TF+ +L  CSH GLVE+    F  M 
Sbjct: 583 WTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM- 641

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           +A+G  P+ +HY+C+ D+L RAG++ EA  ++ K P     +    ALL AC  + +  +
Sbjct: 642 QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEAN-SWAALLSACNTYKNEEI 700

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
            +   +RL EL   ++  YVL +N++A+ G W + A++R  M+   +KK    S ++V+G
Sbjct: 701 GERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 760

Query: 490 KDHTLLA 496
           + H   +
Sbjct: 761 QYHAFFS 767



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 206/446 (46%), Gaps = 61/446 (13%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P +   M+   ++  D+  A  LF  MPE  R++V+ + M+D  +K GRV EA +++++ 
Sbjct: 152 PFTYDFMVHEHVKAGDIASARGLFDGMPE--RSVVSYTTMVDALMKRGRVAEAVELYEQC 209

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIA-KL 141
             G+V  +T+ ISG+ +         +F +M       N +++  ++  C   G     +
Sbjct: 210 PSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAM 269

Query: 142 EVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDA 187
            ++         E     +N++  L         AR+ F +M  KD+V+W A++  Y ++
Sbjct: 270 SIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSES 329

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  + + MP+RN  +W  +I R+ + G    A+KL + M      PN +  +S+L
Sbjct: 330 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 389

Query: 248 TSCEGMLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HY 282
           ++C   LE++      HA ++++G     F   + +   C C                + 
Sbjct: 390 SAC-ATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI 448

Query: 283 VFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           V W+     + +   +  A   F+++ A+++ SW  +I  Y+ +       R F  ML S
Sbjct: 449 VCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLAS 508

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGR----KTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           G  P EITF  VL  C++   +  G+    KT  L     G +      + L+D+  ++G
Sbjct: 509 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL-----GMEESIFIGTALSDMYAKSG 563

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALL 419
            ++ + R+  +MP  ER+ V   A++
Sbjct: 564 DLQSSKRMFYQMP--ERNDVTWTAMI 587


>gi|302767812|ref|XP_002967326.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
 gi|300165317|gb|EFJ31925.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
          Length = 569

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/464 (31%), Positives = 232/464 (50%), Gaps = 34/464 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLR--NHDLPKAEALFRAMPESQRNIV 59
           + +  T ++  A   FD M Q D VS A+MI  + +     + +A+ +F   P  QRN+V
Sbjct: 134 TAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAP--QRNVV 191

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           + + MI GY  +GR+ +A+ VFD + + +V SW +L++GY + +Q+ E +R+FDRMP   
Sbjct: 192 SWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAEAKRVFDRMPAT- 250

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N V   TV+   A                  G +R   T   R  F +MP + + +W+ 
Sbjct: 251 -NAVCCNTVMASFA------------------GADRMPET---RSLFDRMPERTLASWST 288

Query: 180 MITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           M+  Y  +G+ A A   F+ MPQR+  + +WNA+I  +  NG +  A++L   M +    
Sbjct: 289 MLGGYAQSGHTASAKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCS 348

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSA 296
           P+  +  S L +C G+     A  +  RL    +  L      H    D +G    +  A
Sbjct: 349 PDPASYASALAACAGLASLGAARDIHWRLC---KAGLETDAFVHNALVDFYGKSGRMADA 405

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L F+ L + DVV+W A+   +S  G    V  L   +   G +PD ITF+ +L+   HA
Sbjct: 406 ELVFQSLASVDVVTWNALAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHA 465

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV+ GR+ F  M  +Y  +   EHY CL D+L RA +++EA+  V+ M PH    V   
Sbjct: 466 GLVDHGRRAFAAMVESYRIEAGIEHYHCLVDMLGRANRLEEALAEVAAM-PHRPSSVTWT 524

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
            +L  C    ++ +A    E L+ + P    AYVL ANV+ + G
Sbjct: 525 TVLSTCVKWKNLDVASVAFESLLGIDPDGPAAYVLMANVYGSAG 568



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 205/448 (45%), Gaps = 54/448 (12%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D V+  +MIT + +N +L  A+A+F  MP   RN V+ +A+IDG  +      A+KVFD 
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPA--RNFVSWNAIIDGCAQGQDEALAKKVFDS 58

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI----- 138
           + +  V SWT++++ Y ++ +++E R L  +MP    N+VSW  ++   A N L+     
Sbjct: 59  MPQREVVSWTAMVATYSQSGRLEEARALLSKMP--ALNIVSWNVMIQAFADNLLVEDAKE 116

Query: 139 -----AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG--NMA 191
                 + + +SW  + T   + +   LAR  F +MP +D+V+W  MI +Y   G  +M 
Sbjct: 117 RFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMD 176

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--------------- 236
           QA E+F+  PQRNV +WN MI  Y+ +G    A  + + M Q                  
Sbjct: 177 QAKEIFDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQ 236

Query: 237 ----------MP--NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
                     MP  N   C +++ S  G        +L  R+    E +L    T    +
Sbjct: 237 LAEAKRVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRM---PERTLASWSTMLGGY 293

Query: 285 WDWGFQLDVNSARLAFERLEAK--DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
              G      SA+  F+R+  +  D+VSW A+I  + ++G   +  +LF  M + G  PD
Sbjct: 294 AQSGH---TASAKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPD 350

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             ++   L+ C+    +   R     + +A G +  A  ++ L D   ++G++ +A  V 
Sbjct: 351 PASYASALAACAGLASLGAARDIHWRLCKA-GLETDAFVHNALVDFYGKSGRMADAELVF 409

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRM 430
             +     D V   AL       G  R+
Sbjct: 410 QSLA--SVDVVTWNALAAGFSRQGSYRL 435



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 141/322 (43%), Gaps = 38/322 (11%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+VAWNAMITAY   GN+  A  +F  MP RN  +WNA+ID  A+   E  A K+ + M 
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMP 60

Query: 233 QSRFMPNETTCTSILTSCEGMLE-----------------NMLAHALAIRLGFEQETSLT 275
           Q   +    T      S  G LE                 N++  A A  L  E      
Sbjct: 61  QREVV--SWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLVEDAKERF 118

Query: 276 YKCTCH-YVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF--QV 327
            +   H +V W+     +     +  AR AF+R+  +DVVSW  MI +Y+  G     Q 
Sbjct: 119 DRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQA 178

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             +F R      + + +++  +++  S +G +++ +  F+ M +    K      + +A 
Sbjct: 179 KEIFDR----APQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQ----KDVISWAALVAG 230

Query: 388 ILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            L+   Q+ EA RV  +MP       + V+ +  GA R+     + D + ER +    + 
Sbjct: 231 YLQNQ-QLAEAKRVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTM 289

Query: 446 SGAYVLSANVHAARGEWDEFAQ 467
            G Y  S +  +A+  +D   Q
Sbjct: 290 LGGYAQSGHTASAKSFFDRMPQ 311


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 242/470 (51%), Gaps = 28/470 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  + +N D+  A   F+ MP   ++ +  + +I GY K+G V+EAR++FD +     
Sbjct: 214 ALVDFYAKNGDMDSALMAFKEMP--VKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTS 271

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW S+I+ Y    +  E   LFD+M  +    N ++ TTV   CA  G           
Sbjct: 272 ASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTG----------- 320

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            + TG       + AR +  +   ++++   A++  YV    + +A   F+ MP+R+V  
Sbjct: 321 DLDTG-------RRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVA 373

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W+ MI  Y++NG    +++L   M  +   PNE T   +L++C  +  + L   +     
Sbjct: 374 WSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIG---N 430

Query: 268 FEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           + +  +L           D   +   V  AR  F R+E K VV+W +MI   + +G    
Sbjct: 431 YIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAED 490

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              L+ +M+  G +P+E+TFV +L+ C+HAGLV+KG   F  M +     P+ EH +C+ 
Sbjct: 491 AIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIV 550

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L ++G++ EA + +  M   E + V+   LL ACR H DV +A     +L+ L+P++S
Sbjct: 551 DLLCKSGRLWEAYKFICDMEV-EPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNS 609

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
             YVL +N++A  G W +  ++R  M  + ++K++++S IE+ G+ H  L
Sbjct: 610 SIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFL 659



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 29/279 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAESAM 64
           +G V+EA +LFD M +    S  SMI  +    +  +A  LF  M    +  N +  + +
Sbjct: 253 SGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTV 312

Query: 65  IDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                K G +D  R+    I E    NV   T+L+  Y K R +DE R  FDRMP   ++
Sbjct: 313 FSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMP--RRD 370

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLARE 164
           VV+W+T++ G + NG       L  +++          ++   + C  L  + + +    
Sbjct: 371 VVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGN 430

Query: 165 YFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
           Y ++     + ++  +A+I  Y   G++A+A  +FN M Q+ V TWN+MI   A NG   
Sbjct: 431 Y-IESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAE 489

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA 259
            A+ L   M      PNE T  ++LT+C   G+++  +A
Sbjct: 490 DAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIA 528


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 261/548 (47%), Gaps = 69/548 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-EALFRAMPESQRN---------- 57
           ++ +A K+FD M + D VS  ++I  F +N    KA E + R   E QR           
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 58  --------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                     +   +A+ D Y K G V+ AR +FD + +  V S
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           W S++ GY +  + ++   +F++M   L+  +  T V +          +E +       
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKM---LEEGIDPTGVTI----------MEALHACADLG 363

Query: 152 GLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            LER    K   ++  Q+    DI   N++I+ Y     +  AS++FN +  R   +WNA
Sbjct: 364 DLERG---KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG 267
           MI  YA+NG    A+   + M      P+  T  S++ +   +     A   H L IR  
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            ++   +T      Y          ++ AR  F+ +  + V++W AMI  Y  HG G   
Sbjct: 481 LDKNIFVTTALVDMYSKCGA-----IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF +M K   +P++IT++ V+S CSH+GLV++G + F  M + YG +P  +HY  + D
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG++KEA   +  MP       V GA+LGAC++H ++ + +   ++L EL P   G
Sbjct: 596 LLGRAGRIKEAWDFIENMPI-SPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREM 501
            +VL AN++A+  +W + A+VRK ME++ +KK    S +E++ + H+  +     P  + 
Sbjct: 655 YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKR 714

Query: 502 GYVVLKEV 509
            Y  L+E+
Sbjct: 715 IYAFLEEL 722



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 28/295 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V+ A  +FD M Q   VS  SM+  +++N +  KA A+F  M E   +    + M   
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356

Query: 68  YVKAGRVDEAR-----KVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +  A   D  R     K  D++  G ++    SLIS Y K ++VD    +F+   L  + 
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNN--LNGRT 414

Query: 122 VVSWTTVVLGCAHNGLIA--------------KLEVISWTTMCTGLERNAMTKLAR---- 163
            VSW  ++LG A NG ++              K +  +  ++   L   ++T+ A+    
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
                  +K+I    A++  Y   G +  A +LF+++  R+V TWNAMID Y  +G   A
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTY 276
           A+ L + M +    PN+ T  S++++C   G+++  L H  +++  +  E S+ +
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 48/389 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK-----------ARQV 105
           N+ A + +++ Y K  ++D+A K+FD + E ++ SW ++I+G+ +            R  
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 106 DEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREY 165
           DEG+R          + ++  TV+   A  GL+   + I    +  G             
Sbjct: 241 DEGQR---------PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG------------- 278

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F ++ N       A+   Y   G++  A  +F+ M Q+ V +WN+M+D Y +NG    A+
Sbjct: 279 FAKLVNIS----TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHY 282
            +   M +    P   T    L +C   G LE     H    +L    + S+       Y
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V+ A   F  L  +  VSW AMIL Y+ +G   +    F+ M   G KPD
Sbjct: 395 SKCK-----RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             T V V+   +   +    +    L+ R+          + L D+  + G +  A ++ 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSC-LDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA 431
             +   +R  +   A++     HG  R A
Sbjct: 509 DMIS--DRHVITWNAMIDGYGTHGLGRAA 535



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 140/308 (45%), Gaps = 27/308 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
           ++ ++  + K G ++EA +VF+ I +     + +++ GY K   ++       RM    +
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 120 KNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           K VV ++T ++  C  N  + + + I    +      N                 + A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN-----------------VFAMT 186

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            ++  Y     +  A ++F+ MP+R++ +WN +I  +++NG    A++L+  M      P
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +  T  ++L +   +   M+    H  AIR GF +  +++      Y          V +
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG-----SVET 301

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           ARL F+ ++ K VVSW +M+  Y  +G   +   +F +ML+ G  P  +T +  L  C+ 
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 356 AGLVEKGR 363
            G +E+G+
Sbjct: 362 LGDLERGK 369


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 253/525 (48%), Gaps = 52/525 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G + +A KLF+ M Q D V+   +I  +++N    +A  LF AM  +  + + V  ++ +
Sbjct: 295 GNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFL 354

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
              +++G +   ++V   I       +VY  ++LI  YFK   V+  R++F +    L +
Sbjct: 355 PSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQN--TLVD 412

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------KLAREYF 166
           V   T ++ G   +GL I  +    W     G+  N++T              KL +E  
Sbjct: 413 VAVCTAMISGYVLHGLNIDAINTFRWLIQ-EGMVPNSLTMASVLPACAALAALKLGKELH 471

Query: 167 VQMPNK---DIVAWNAMIT-AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
             +  K   +IV   + IT  Y   G +  A E F  M + +   WN+MI  +++NG   
Sbjct: 472 CDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPE 531

Query: 223 AAMKLLNLMFQS--RF-MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET------- 272
            A+ L   M  S  +F   + ++  S   +   +      H   IR  F  +T       
Sbjct: 532 MAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALI 591

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +  KC              +  AR  F  +  K+ VSW ++I AY NHG   +   LF 
Sbjct: 592 DMYSKCG------------KLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFH 639

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML++G  PD +TF+ ++S C HAGLV +G   F+ M+R YG   R EHY+C+ D+  RA
Sbjct: 640 EMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRA 699

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++ EA   +  M P   D  V G LLGACRLHG+V +A      L+EL P +SG YVL 
Sbjct: 700 GRLHEAFDAIKSM-PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 758

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +NVHA  GEW    +VR+ M E+ V+K+  +S I+V G  H   A
Sbjct: 759 SNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHMFSA 803



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 27/298 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--R 114
           ++   SA+I  Y   G + +AR+VFDE+ + +   W  ++ GY K+   +     F   R
Sbjct: 179 DLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMR 238

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
               + N V++T ++  CA  G             C G + + +   +   F      D 
Sbjct: 239 TSYSMVNSVTYTCILSICATRG-----------KFCLGTQVHGLVIGSGFEF------DP 281

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N ++  Y   GN+  A +LFN MPQ +  TWN +I  Y +NG    A  L N M  +
Sbjct: 282 QVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISA 341

Query: 235 RFMPNETTCTSILTSC--EGMLENML-AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              P+  T  S L S    G L +    H+  +R     +  L  K     +++  G   
Sbjct: 342 GVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYL--KSALIDIYFKGG--- 396

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
           DV  AR  F++    DV   TAMI  Y  HG        F  +++ G  P+ +T   V
Sbjct: 397 DVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASV 454



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 164/403 (40%), Gaps = 40/403 (9%)

Query: 52  PESQRNIVAE-SAMIDGYVKAGRVDEARKVFDEIYEG---NVYSWTSLISG-YFKARQVD 106
           PE+Q  +  +  ++      A  V +AR+V  +I  G   +V + +S + G Y    ++ 
Sbjct: 37  PETQDYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRIS 96

Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----LIAKLEVISWTT------------M 149
           +G  LF    L+L N + W  ++ G    G     L+   +++                 
Sbjct: 97  DGGNLF--FGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKA 154

Query: 150 CTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C GL    +  +       +  + D+   +A+I  Y D G +  A  +F+ +PQR+   W
Sbjct: 155 CGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILW 214

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
           N M+  Y ++G    AM     M  S  M N  T T IL+ C    +  L    H L I 
Sbjct: 215 NVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIG 274

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            GFE +  +       Y     G   D   AR  F  +   D V+W  +I  Y  +G   
Sbjct: 275 SGFEFDPQVANTLVAMYS--KCGNLFD---ARKLFNTMPQTDTVTWNGLIAGYVQNGFTD 329

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY--S 383
           +   LF  M+ +G KPD +TF   L     +G +   ++  + + R    +   + Y  S
Sbjct: 330 EAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVR---HRVPFDVYLKS 386

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L DI  + G V+ A ++  +      D  V  A++    LHG
Sbjct: 387 ALIDIYFKGGDVEMARKIFQQNT--LVDVAVCTAMISGYVLHG 427


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/410 (31%), Positives = 214/410 (52%), Gaps = 33/410 (8%)

Query: 93  TSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
            SL+  Y K  ++  G +LFD  P   K ++++ W  ++ GC   G ++K          
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSK---------- 226

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                      A   F  MP ++  +WN++I  +V  G++ +A ELF  MP++NV +W  
Sbjct: 227 -----------AASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTT 275

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLG 267
           MI+ +++NG    A+ +   M +    PN+ T  S L +C   G L+     H      G
Sbjct: 276 MINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNG 335

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F+    +       Y         ++ SA   F   + KD+++W+ MI  ++ HG   Q 
Sbjct: 336 FQLNRGIGTALVDMYAKCG-----NIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
            + F +M  +G  PDE+ F+ +L+ CSH+G V++G   F  M   Y  +P  +HY+ + D
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG++ EA+  +  MP +  D V+ GAL  ACR H ++ MA+   E+L++L+P   G
Sbjct: 451 LLGRAGRLDEALSFIQSMPINP-DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPG 509

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +YV  +NV+AA G W++  +VR  M+ R V+K   +S IEV+G+ H+ +A
Sbjct: 510 SYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVA 559



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRN----HDLPKAEALFRAMPESQRNIVAESA 63
           G++    +LFDE  Q +      +  V +       DL KA +LF AMPE  RN  + ++
Sbjct: 187 GELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPE--RNAGSWNS 244

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           +I+G+V+ G +D AR++F ++ E NV SWT++I+G+ +    ++   +F RM  +    N
Sbjct: 245 LINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPN 304

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            ++  + +L C   G +   E I       G + N                      A++
Sbjct: 305 DLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIG-----------------TALV 347

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   GN+  AS +F     +++ TW+ MI  +A +G    A++    M  +   P+E 
Sbjct: 348 DMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEV 407

Query: 242 TCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTY 276
              +ILT+C   G ++  L    ++RL +  E ++ +
Sbjct: 408 IFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH 444


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/479 (29%), Positives = 229/479 (47%), Gaps = 60/479 (12%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFK-ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           A   FD++   N +S+ +L++   +      +   LFD MP   +N+VS+ T++    H+
Sbjct: 90  AVAAFDDLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHH 149

Query: 136 G-------LIAKL---------------EVISWTTMCTGLER------------------ 155
           G       ++A+L                V+S  T C G+                    
Sbjct: 150 GRQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMEL 209

Query: 156 -----NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                NAM            AR  F Q+  +D V W +MI+ Y     + +A ++F++MP
Sbjct: 210 TVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMP 269

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            ++   W A+I  + +NG E  A++L   M      P      S+L +C  +        
Sbjct: 270 DKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKE 329

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
           L   +      S  +    H    D   +  D+ +A   F R+  +D +SW +M+  +S+
Sbjct: 330 LHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSH 389

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F  ML +G +P  +TF+ VL+ CSH+GLV  GR     M   +G +PRAE
Sbjct: 390 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESMED-HGVEPRAE 448

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA+  +  +P           GALLGACRLHG++ +A+ + E L
Sbjct: 449 HYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFL 508

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            +L+P +SG YV+ +N++AA G+WD+  +VR  M E+ +KK  ++S IEV+   H  +A
Sbjct: 509 FKLEPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSLKHVFVA 567



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 25/223 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM++ Y KA RV+EAR +FD+I   +  +WTS+ISGY + +++DE  ++FD MP
Sbjct: 210 TVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMP 269

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKL--EVISWTTMCTGLERNAMTKL-----A 162
              K+ V+WT ++ G   NG       L  ++  E +S TT        A  KL      
Sbjct: 270 --DKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRG 327

Query: 163 REYFVQMPNK-------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           +E    +  +       +I   NA++  Y   G+M  A  +F+ MP+R+  +WN+M+  +
Sbjct: 328 KELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGF 387

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN 256
           + NG    ++ +   M  +   P   T  ++LT+C   G++ N
Sbjct: 388 SHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSN 430



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 47/343 (13%)

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMP 170
           +PL  + + +   + LG A +  + K  + S T +   L     R   +  A   F  +P
Sbjct: 39  IPLLERAISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLP 98

Query: 171 NKDIVAWNAMITAYVD-AGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKL 227
           +K+  ++N ++ A +        A  LF+ MP   RN+ ++N ++     +G +  A+++
Sbjct: 99  HKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRV 158

Query: 228 LNLMFQSRFMP-----NETTCTSILTSCEGM-------------------LENMLAHALA 263
           +  + + RF+      +  T  S+ T+C G+                   L  ++A+A+ 
Sbjct: 159 VARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMV 218

Query: 264 -----------IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
                       R  F+Q  S+    T   +   +     ++ A   F+ +  KD V+WT
Sbjct: 219 NAYSKAWRVEEARHLFDQ-ISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWT 277

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-NLMSR 371
           A+I  +  +G       LF RML  G  P     V VL  C+  GLV +G++   +++ R
Sbjct: 278 ALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRR 337

Query: 372 AYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           + G  P     ++ L D+  + G +  AM V  +MP  ERD +
Sbjct: 338 SIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMP--ERDFI 378



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 46/196 (23%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +V+EA  LFD++S  D V+  SMI+ + +   L +A  +F  MP+  R  VA +A+I G+
Sbjct: 226 RVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDR--VAWTALISGH 283

Query: 69  VKAGRVDEARKVFDEIY-EG---------------------------------------- 87
            + G  D A ++F+ +  EG                                        
Sbjct: 284 EQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDP 343

Query: 88  -NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            N++   +L+  Y K   +     +F RMP   ++ +SW ++V G +HNGL  +   I  
Sbjct: 344 FNIFIHNALVDMYSKCGDMTAAMAVFHRMP--ERDFISWNSMVTGFSHNGLGKQSLAIFE 401

Query: 147 TTMCTGLERNAMTKLA 162
             +  G+    +T LA
Sbjct: 402 EMLVAGVRPTHVTFLA 417


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/539 (28%), Positives = 265/539 (49%), Gaps = 44/539 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA ++FDE+ +PD V+ +SM++ F +N    +A   FR M  +         +I  
Sbjct: 110 GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 169

Query: 68  YVKAGRVDEARK-------VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                ++  +R        V    +  ++    SL++ Y K+R   E   LF    +  K
Sbjct: 170 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM--IAEK 227

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL------AREYFVQMPNK-- 172
           +V+SW+TV+     NG  A+  ++    M  G E N  T L      A  + ++   K  
Sbjct: 228 DVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTH 287

Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                     ++    A++  Y+   +  +A  +F+ +P+++V +W A+I  +  NG   
Sbjct: 288 ELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAH 347

Query: 223 AAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYKC 278
            +++  ++M  ++   P+      +L SC   G LE     H+  I+ GF+    +    
Sbjct: 348 RSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASL 407

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          + +A   F  +  KD V WT++I  Y  HG G +    F  M+KS 
Sbjct: 408 VELYSRCG-----SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSS 462

Query: 339 -TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KP+E+TF+ +LS CSHAGL+ +G + F LM   Y   P  EHY+ L D+L R G +  
Sbjct: 463 EVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDT 522

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ +  +MP       +LG LLGACR+H +  MA+ + ++L EL+ + +G Y+L +NV+ 
Sbjct: 523 AIEITKRMPFSPTPQ-ILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYG 581

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            +GEW+   ++R  +++R +KK  + S IE++ K H  +A     P +E  Y +LKE+D
Sbjct: 582 VKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELD 640



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 173/370 (46%), Gaps = 28/370 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S++I  Y+K GR+ EA ++FDE+ + ++ +W+S++SG+ K     +    F RM +    
Sbjct: 100 SSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM---- 155

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                      A +    ++ +I+  + CT L  + + +    + ++   + D+   N++
Sbjct: 156 -----------ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSL 204

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y  +    +A  LF ++ +++V +W+ +I  Y +NG    A+ + N M      PN 
Sbjct: 205 LNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNV 264

Query: 241 TTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T   +L +C     + +    H LAIR G E E  ++      Y+            A 
Sbjct: 265 ATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC-----FSPEEAY 319

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHA 356
             F R+  KDVVSW A+I  ++ +G   +    F+ M L++ T+PD I  V VL  CS  
Sbjct: 320 AVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSEL 379

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G +E+  K F+     YGF       + L ++  R G +  A +V + +    +D VV  
Sbjct: 380 GFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL--KDTVVWT 436

Query: 417 ALLGACRLHG 426
           +L+    +HG
Sbjct: 437 SLITGYGIHG 446



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 26/355 (7%)

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           +AR++F E+ + ++Y W +L+    + +Q +E    F  M    +   ++T  V   A  
Sbjct: 12  DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKA-- 69

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
               +L  +++  M  G  +  +T             D+   +++I  Y+  G M +A  
Sbjct: 70  --CGELREVNYGEMIHGFVKKDVT----------LGSDLYVGSSLIYMYIKCGRMIEALR 117

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCEGML 254
           +F+ + + ++ TW++M+  + +NG    A++    M   S   P+  T  +++++C  + 
Sbjct: 118 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLS 177

Query: 255 ENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            + L    H   IR GF  + SL       Y      F+  VN     F+ +  KDV+SW
Sbjct: 178 NSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYA-KSRAFKEAVN----LFKMIAEKDVISW 232

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           + +I  Y  +G   +   +F  M+  GT+P+  T + VL  C+ A  +E+GRKT  L  R
Sbjct: 233 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 292

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             G +   +  + L D+  +    +EA  V S++P   +D V   AL+    L+G
Sbjct: 293 K-GLETEVKVSTALVDMYMKCFSPEEAYAVFSRIP--RKDVVSWVALISGFTLNG 344


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 211/429 (49%), Gaps = 79/429 (18%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +A+I   V  G +D ARK+FD+    ++ SW S+I+GY     ++  R+LFD M 
Sbjct: 185 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDSM- 241

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              K +VSWTT+V+G A +GL+                      +A + F +MP+KD+V 
Sbjct: 242 -TNKTMVSWTTMVVGYAQSGLL---------------------DMAWKLFDEMPDKDVVP 279

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WNAMI  YV A    +A  LFN M   N+                               
Sbjct: 280 WNAMIGGYVHANRGKEALALFNEMQAMNI------------------------------- 308

Query: 237 MPNETTCTSILTSCE--GMLENML-------AHALAIRLGFEQETSLTY-KCTCHYVFWD 286
            P+E T  S L++C   G L+  +        H L++ +         Y KC        
Sbjct: 309 NPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCG------- 361

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 +  A   F+ L  ++ ++WTA+I   + HG+       F+ M+ +   PDE+TF
Sbjct: 362 -----KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 416

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +G+LS C H GLVE+GRK F+ MS  +   P+ +HYSC+ D+L RAG ++EA  ++  MP
Sbjct: 417 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 476

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             E D VV GAL  ACR+HG+V M +    +L+++ P  SG YVL AN++     W E  
Sbjct: 477 I-EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAG 535

Query: 467 QVRKKMERR 475
           + RK M +R
Sbjct: 536 KARKLMRQR 544



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 23/245 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+FD+    D VS  SMI  +  N  L  A  LF +M  + + +V+ + M+ G
Sbjct: 200 GDLDGARKMFDKSCVRDLVSWNSMINGYCGN--LESARKLFDSM--TNKTMVSWTTMVVG 255

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--VSW 125
           Y ++G +D A K+FDE+ + +V  W ++I GY  A +  E   LF+ M     N   V+ 
Sbjct: 256 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 315

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            + +  C+  G    L+V  W      +E++ ++             ++    A+I  Y 
Sbjct: 316 VSCLSACSQLG---ALDVGIWIHHY--IEKHELS------------LNVALGTALIDMYA 358

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G + +A ++F  +P RN  TW A+I   A +G    A+   + M  +  MP+E T   
Sbjct: 359 KCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLG 418

Query: 246 ILTSC 250
           +L++C
Sbjct: 419 LLSAC 423



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 67/289 (23%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           G  G ++ A KLFD M+    VS  +M+  + ++  L  A  LF  MP+  +++V  +AM
Sbjct: 226 GYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPD--KDVVPWNAM 283

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYS----------------------W---------- 92
           I GYV A R  EA  +F+E+   N+                        W          
Sbjct: 284 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL 343

Query: 93  -------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA----HNGLIAKL 141
                  T+LI  Y K  ++ +  ++F  +P   +N ++WT ++ G A     +G IA  
Sbjct: 344 SLNVALGTALIDMYAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYF 401

Query: 142 ----------EVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVD 186
                     + +++  + +      + +  R+YF QM +K      +  ++ M+     
Sbjct: 402 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 461

Query: 187 AGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
           AG + +A EL   MP + +   W A+      +G     E AA KLL +
Sbjct: 462 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM 510


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/508 (29%), Positives = 252/508 (49%), Gaps = 57/508 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAMPESQR-------NIV 59
           G +  A ++FD M  PD V   S+I+ F RN +    AEAL + + +  +        I+
Sbjct: 163 GSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTIL 222

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
                + G    G +   +K+   +   +VYS T+LI  Y +   VD             
Sbjct: 223 TACPRVLGQQIHGYL--IKKI--GLRSQSVYSSTALIDFYSRNEGVD------------- 265

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N  + + V+  C   GL  +L        C+ ++ + +T             DI   NA
Sbjct: 266 PNEFALSIVLGACGSIGLGRQLH-------CSAIKHDLIT-------------DIRVSNA 305

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ Y   G + +   + N +   ++ +W   I    +NG    A+ LL  M    F PN
Sbjct: 306 LLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPN 365

Query: 240 ETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
               +S+L+SC     + + M  H LA++LG + E      CT + +   +     + SA
Sbjct: 366 GYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEI-----CTGNALINMYSKCGQMGSA 420

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           RLAF+ +   DV SW ++I  ++ HG   +   +F++M  +G KPD+ TF+GVL  C+H+
Sbjct: 421 RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHS 480

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G+VE+G   F LM   Y F P   HY+C+ D+L R G+  EA+R+++ M P E D ++  
Sbjct: 481 GMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDM-PFEPDALIWK 539

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
            LL +C+LH ++ +     +RL+EL    S +YVL +N++A  GEW++  +VR++M E  
Sbjct: 540 TLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETG 599

Query: 476 VKKVASFSQIEVKGKDHTLLAPMREMGY 503
           VKK A  S IE+  + HT  +  R+M +
Sbjct: 600 VKKDAGCSWIEINNEVHTFAS--RDMSH 625



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 155/397 (39%), Gaps = 71/397 (17%)

Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN---- 156
           K+ ++ +   LFDRMP K  NVV+WT+V+ GC  NG       +    + +G+  N    
Sbjct: 60  KSGRLADALDLFDRMPRK--NVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFAC 117

Query: 157 -----AMTKL----AREYFVQMPNKDIVAWNA-----MITAYVDAGNMAQASELFNLMPQ 202
                A   L    A E    +  +   A +A     +I  Y   G++  A E+F+ M  
Sbjct: 118 NAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDS 177

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML---- 258
            +V  + ++I  + RNG    A + L  M +    PNE T T+ILT+C  +L   +    
Sbjct: 178 PDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYL 237

Query: 259 ------------------------------AHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                                           AL+I LG      L  +  C  +  D  
Sbjct: 238 IKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLI 297

Query: 289 FQLDVNSARLA--------------FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             + V++A L+                ++E  D+VSWT  I A   +G G +   L  +M
Sbjct: 298 TDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQM 357

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
              G  P+   F  VLS C+    +++G + F+ ++   G        + L ++  + GQ
Sbjct: 358 HSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQ 416

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           +  A      M  H  D     +L+     HGD   A
Sbjct: 417 MGSARLAFDVM--HTHDVTSWNSLIHGHAQHGDANKA 451



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + D+V     +   V +G +A A +LF+ MP++NV  W +++    RNG   AA+ +   
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFAD 104

Query: 231 MFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +S   PN+  C + L +C     +      H+LA+R GF  +  +    +C    +  
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG---SCLIEMYSR 161

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
              L   +A+  F+R+++ DVV +T++I A+  +G          +MLK G KP+E T  
Sbjct: 162 CGSLP--AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMT 219

Query: 348 GVLSDC 353
            +L+ C
Sbjct: 220 TILTAC 225



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 293 VNSARLA-----FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           V S RLA     F+R+  K+VV+WT+++   + +G       +FA M++SG  P++    
Sbjct: 59  VKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACN 118

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
             L  C+  G +  G +  +L  RA GF   A   SCL ++  R G +  A  V  +M  
Sbjct: 119 AALVACADLGALRAGEQVHSLAVRA-GFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRM-- 175

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
              D V   +L+ A   +G+  +A    E LI++
Sbjct: 176 DSPDVVGYTSLISAFCRNGEFELA---AEALIQM 206


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%)

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           +  LA + F  MP +  V +N +I+  +  G +A A E+F+ MP  +  +W A+ID   +
Sbjct: 154 LPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVK 213

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSL 274
           NG    A+     M      P+  T  +++++C   G L   M  H L +R G E+   +
Sbjct: 214 NGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRI 273

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                  Y          V  AR  F  +  + VVSW +MI+ ++ +G        F  M
Sbjct: 274 ANSLIDMYARCG-----QVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 328

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G KPD +TF GVL+ CSH GL ++G + ++LM   YG   R EHY C+ D+L R+GQ
Sbjct: 329 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 388

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EAMRVV+ MP  P+E   VVLGALL  CR+HGDV MA+ + + L+EL P     YVL 
Sbjct: 389 LEEAMRVVTTMPMRPNE---VVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLL 445

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +N++AA G+WD   +VR  M+ R ++K   +S +E+ G  H  ++
Sbjct: 446 SNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVS 490



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 112/301 (37%), Gaps = 66/301 (21%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           LF AMP   R+ V  + +I G ++ G V  A +VFD +   +  SWT+LI G  K  + D
Sbjct: 161 LFDAMP--VRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 218

Query: 107 EGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN-------- 156
           E    F  M L     + V+   V+  CA  G +     +    +  GLERN        
Sbjct: 219 EAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLI 278

Query: 157 ------AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM------PQRN 204
                    +LAR+ F  M  + +V+WN+MI  +   G  A A E F  M      P   
Sbjct: 279 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAV 338

Query: 205 VWT----------------------------------WNAMIDRYARNGPEGAAMKLLNL 230
            +T                                  +  ++D   R+G    AM+++  
Sbjct: 339 TFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTT 398

Query: 231 MFQSRFMPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           M      PNE    ++L  C      GM E ++ H L +  G +    L          W
Sbjct: 399 M---PMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 455

Query: 286 D 286
           D
Sbjct: 456 D 456



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 35/236 (14%)

Query: 204 NVWTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
           +V +W + I R A+ G     AA     L   +  +PN+ T  ++L++C     + LA  
Sbjct: 63  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122

Query: 262 LAIR-----LGFEQETSLTYKCTCHYVFWD----WGFQL-DVNSARLA------------ 299
           LA+      L       L   C   + F         QL D    R A            
Sbjct: 123 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 182

Query: 300 ----------FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                     F+ + A D VSWTA+I     +G   +    F  ML  G +PD +T + V
Sbjct: 183 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAV 242

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +S C+  G +  G     L+ R  G +      + L D+  R GQV+ A +V S M
Sbjct: 243 ISACAEVGALGLGMWVHRLVVR-QGLERNVRIANSLIDMYARCGQVELARQVFSGM 297


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/542 (29%), Positives = 249/542 (45%), Gaps = 75/542 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+     K+FDEMS  + V    MI  ++ NH       +FR M         ++ 
Sbjct: 63  YAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNG--GFRPDNY 120

Query: 64  MIDGYVKAGRVDEARK--------VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                +KA    E  +        V     + N++    LI+ Y K   + E RR+FD M
Sbjct: 121 TYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEM 180

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
             K  +VVSW ++V G AHN     +       +C  +E           + Q P+   +
Sbjct: 181 IWK--DVVSWNSMVAGYAHN-----MRFDDALEICREMED----------YGQKPDGCTM 223

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           A      A   + N+    ++F  + ++N+ +WN MI  Y +N     A+ L   M + R
Sbjct: 224 ASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCR 283

Query: 236 FMPNETTCTSILTSCEGMLENMLAH---------ALAIRLGFEQETSLTY-KCTCHYVFW 285
             P+  T  S+L +C  +   +L            L   L  E      Y +C C     
Sbjct: 284 VEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGC----- 338

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                  ++ A+  F+R++ +DV SWT++I AY   G G     LF  ML SG  PD I 
Sbjct: 339 -------LDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIA 391

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           FV +LS CSH+GL+++GR  F  M+  Y   PR EHY+CL D+L RAG+V EA  ++ +M
Sbjct: 392 FVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQM 451

Query: 406 P--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           P  P+ER   V   LL +CR+  ++ +     + L++L P  SG YVL +N++A  G W 
Sbjct: 452 PIEPNER---VWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWK 508

Query: 464 EFAQVRKKMER-RVKKVASFSQIEVKGKDHT--------------------LLAPMREMG 502
           E  ++R  M+R +++K    S +E+  + HT                    L+A M+E+G
Sbjct: 509 EVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELG 568

Query: 503 YV 504
           YV
Sbjct: 569 YV 570



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++ +Y   G      ++F+ M  RNV  +N MI  Y  N      + +   M    F P+
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 240 ETTCTSILTSC---EGMLENMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGF 289
             T   +L +C   E +   +L H   +++G +          ++  KC C +       
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLF------- 171

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                 AR  F+ +  KDVVSW +M+  Y+++        +   M   G KPD  T   +
Sbjct: 172 -----EARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASL 226

Query: 350 L 350
           +
Sbjct: 227 M 227



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 33/266 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           + +G  G + EA ++FDEM   D VS  SM+  +  N     A  + R M +  +     
Sbjct: 162 AMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGC 221

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            +A          +  V    K+F  +   N+ SW  +I  Y K     +   L+ +M  
Sbjct: 222 TMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQME- 280

Query: 118 KLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ---MPN 171
           K +   + +++ +V+  C                    L    + +   EY  +    PN
Sbjct: 281 KCRVEPDAITFASVLPACG------------------DLSALLLGRRIHEYVEKKKLCPN 322

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
             ++  N++I  Y   G +  A  +F+ M  R+V +W ++I  Y   G    A+ L   M
Sbjct: 323 --LLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEM 380

Query: 232 FQSRFMPNETTCTSILTSC--EGMLE 255
             S   P+     +IL++C   G+L+
Sbjct: 381 LNSGQAPDSIAFVAILSACSHSGLLD 406


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 189/343 (55%), Gaps = 12/343 (3%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F  MP++ +V+  +++  Y  + N+  A  +F+ M ++NV  WN +I  YA+NG E
Sbjct: 65  ARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEE 124

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA-----HAL--AIRLGFEQETSL 274
             A++L   + +    P   T  ++L +C  +    L      H L    R  F  E+ +
Sbjct: 125 EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDV 184

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
               +   ++   G    ++     FER+ A+D VSW AMI+ Y+ +G       LF RM
Sbjct: 185 FVGNSLVDMYLKTG---SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 241

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
           L S   PD +T +GVLS C H+GLV++GR+ F+ M+  +G  P  +HY+C+ D+L RAG 
Sbjct: 242 LCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGH 301

Query: 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454
           +KEA  ++  MP  E D V+  +LLGACRLH +V + +    RL EL P +SG YVL +N
Sbjct: 302 LKEAEELIKDMPT-EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSN 360

Query: 455 VHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           ++A  G+W +  +VR+ M +R V K    S IE+  K +  LA
Sbjct: 361 MYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLA 403



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 163/383 (42%), Gaps = 73/383 (19%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++V  +A++D Y K GR  EAR +FD +   +V S TS+++GY K+  V++ + +F +M 
Sbjct: 45  DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQM- 103

Query: 117 LKLKNVVSWTTVVLGCAHNG-------LIAKLEVIS-WTTMCT------GLERNAMTKLA 162
              KNV++W  ++   A NG       L  +L+  S W T  T           A+ +L 
Sbjct: 104 -VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLG 162

Query: 163 REYFVQM----------PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           ++  V +          P  D+   N+++  Y+  G++   +++F  M  R+  +WNAMI
Sbjct: 163 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 222

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET 272
             YA+NG    A+ L   M  S   P+  T   +L++C         H+     G   E 
Sbjct: 223 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC--------GHS-----GLVDEG 269

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
              +    H++  D G                ++D   +T M+      GH  +   L  
Sbjct: 270 RRHF----HFMTEDHGIT-------------PSRD--HYTCMVDLLGRAGHLKEAEELIK 310

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRR 391
            M    T+PD + +  +L  C     VE G +T     R +   P  +  Y  L+++   
Sbjct: 311 DM---PTEPDSVLWASLLGACRLHKNVELGERT---AGRLFELDPENSGPYVLLSNMYAE 364

Query: 392 AGQVKEAMRV--------VSKMP 406
            G+  +  RV        VSK P
Sbjct: 365 MGKWADVFRVRRSMKDRGVSKQP 387



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           TG + +  K+F+ M+  D VS  +MI  + +N     A  LF  M  S  N   +S  + 
Sbjct: 197 TGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN--PDSVTMI 254

Query: 67  GYVKA----GRVDEARKVFDEIYEGNVYS-----WTSLISGYFKARQVDEGRRLFDRMPL 117
           G + A    G VDE R+ F  + E +  +     +T ++    +A  + E   L   MP 
Sbjct: 255 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 314

Query: 118 KLKNVVSWTTVVLGC 132
           +  +V+ W +++  C
Sbjct: 315 EPDSVL-WASLLGAC 328


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%)

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           +  LA + F  MP +  V +N +I+  +  G +A A E+F+ MP  +  +W A+ID   +
Sbjct: 65  LPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVK 124

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSL 274
           NG    A+     M      P+  T  +++++C   G L   M  H L +R G E+   +
Sbjct: 125 NGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRI 184

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                  Y          V  AR  F  +  + VVSW +MI+ ++ +G        F  M
Sbjct: 185 ANSLIDMYARCG-----QVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 239

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G KPD +TF GVL+ CSH GL ++G + ++LM   YG   R EHY C+ D+L R+GQ
Sbjct: 240 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 299

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EAMRVV+ MP  P+E   VVLGALL  CR+HGDV MA+ + + L+EL P     YVL 
Sbjct: 300 LEEAMRVVTTMPMRPNE---VVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLL 356

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +N++AA G+WD   +VR  M+ R ++K   +S +E+ G  H  ++
Sbjct: 357 SNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVS 401



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 112/301 (37%), Gaps = 66/301 (21%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           LF AMP   R+ V  + +I G ++ G V  A +VFD +   +  SWT+LI G  K  + D
Sbjct: 72  LFDAMP--VRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 129

Query: 107 EGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN-------- 156
           E    F  M L     + V+   V+  CA  G +     +    +  GLERN        
Sbjct: 130 EAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLI 189

Query: 157 ------AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM------PQRN 204
                    +LAR+ F  M  + +V+WN+MI  +   G  A A E F  M      P   
Sbjct: 190 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAV 249

Query: 205 VWT----------------------------------WNAMIDRYARNGPEGAAMKLLNL 230
            +T                                  +  ++D   R+G    AM+++  
Sbjct: 250 TFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTT 309

Query: 231 MFQSRFMPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           M      PNE    ++L  C      GM E ++ H L +  G +    L          W
Sbjct: 310 M---PMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 366

Query: 286 D 286
           D
Sbjct: 367 D 367


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 232/455 (50%), Gaps = 42/455 (9%)

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLG 131
           D A  +++ I    V++  ++I  + K         L+  M    +   N  + T V+  
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 132 CAH-----NGLIAKLEVISWTTMCTGLERNAMTKL---------AREYFVQMPN-KDIVA 176
           C++      G   +  VI    +     RNA+  L         A++ F ++P+ +D+V+
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           WN+MI  +V  G ++ A +LF  MP+++V +W  +I    +NG    A+     + + + 
Sbjct: 203 WNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKL 262

Query: 237 MPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWD 286
            PNE    S+L +    G LE     H++A  L F    SL         KC C      
Sbjct: 263 RPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGC------ 316

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 ++ +R  F+R+  KD  SW  MI   + HG G +   LF + L  G  P  +TF
Sbjct: 317 ------IDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTF 370

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           +GVL+ CS AGLV +G+  F LM+  YG +P  EHY C+ D+L RAG V +A+ ++++MP
Sbjct: 371 IGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMP 430

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
               D V+  ++LG+C++HG + + + IG +LI++ P+ +G YV  A + A   +W++ +
Sbjct: 431 A-PPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVS 489

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           +VR+ M ER   K+A +S IE +G+ H  +A  +E
Sbjct: 490 KVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKE 524



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 149/367 (40%), Gaps = 62/367 (16%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDR 114
           +++   +A+I  Y    RV+ A++VFDE+    +V SW S+I G+ +  Q+   ++LF  
Sbjct: 166 KDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVE 225

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKL---------------EVISWTTMCTGLERNAMT 159
           MP   K+V+SW T++ GC  NG + K                E I  + +    +   + 
Sbjct: 226 MP--EKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLE 283

Query: 160 KLAREYFV----QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
              R + +    + P    +   A++  Y   G + ++  LF+ MP+++ W+WN MI   
Sbjct: 284 YGKRIHSIANSLRFPMTASLG-TALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGL 342

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
           A +G    A+ L        F P   T   +LT+C              R G   E    
Sbjct: 343 ATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACS-------------RAGLVSEGK-- 387

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                H+      F+L  ++  +  E      +  +  M+   S  G  +    +  RM 
Sbjct: 388 -----HF------FKLMTDTYGIEPE------MEHYGCMVDLLSRAGFVYDAVEMINRM- 429

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-HYSCLADILRRAGQ 394
                PD + +  VL  C   G +E G +  N + +     P    HY  LA I  R  +
Sbjct: 430 --PAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQ---MDPTHNGHYVQLARIFARLRK 484

Query: 395 VKEAMRV 401
            ++  +V
Sbjct: 485 WEDVSKV 491



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 71/294 (24%)

Query: 9   KVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           +V+ A ++FDE+ S  D VS  SMI  F+R   +  A+ LF  MPE  +++++   +I G
Sbjct: 183 RVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPE--KDVISWGTIISG 240

Query: 68  YVKAGRVDEARKVFDEI--------------------------YEGNVYSW--------- 92
            V+ G +++A   F E+                          Y   ++S          
Sbjct: 241 CVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMT 300

Query: 93  ----TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
               T+L+  Y K   +DE R LFDRMP K K   SW  ++ G A +GL           
Sbjct: 301 ASLGTALVDMYAKCGCIDESRFLFDRMPEKDK--WSWNVMICGLATHGL----------- 347

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QR 203
              G E  A   L  ++  Q  +   V +  ++TA   AG +++    F LM      + 
Sbjct: 348 ---GQEALA---LFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEP 401

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            +  +  M+D  +R G    A++++N M      P+     S+L SC+  G +E
Sbjct: 402 EMEHYGCMVDLLSRAGFVYDAVEMINRMPAP---PDPVLWASVLGSCQVHGFIE 452


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/526 (30%), Positives = 250/526 (47%), Gaps = 47/526 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           +    + F+   QP P+  +   T      DL +  A+F    + Q  + A   +     
Sbjct: 5   IYNPNRTFNFSPQP-PLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAF 63

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQ---VDEGRRLFDRMPLKLK---NVV 123
            +  +D AR VF ++ E N + W +++    +        E   LF  M    +   N  
Sbjct: 64  SSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRF 123

Query: 124 SWTTVVLGCAH----------NGLIAKL----------EVISWTTMCTGLE-------RN 156
           ++ +V+  CA           +GLI K            ++    MC  +E       +N
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 157 AMT---KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
            +        E   +  + ++V WN MI   V  G++  A  LF+ MPQR+V +WN MI 
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMIS 243

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQ 270
            YA+NG    A+ L   M  S   PN  T  S+L +    G LE     H  A +   E 
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEI 303

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           +  L       Y          ++ A   FE L  ++ ++W+A+I A++ HG        
Sbjct: 304 DDVLGSALVDMYSKCG-----SIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIH 358

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F  M K+G  P+++ ++G+LS CSHAGLVE+GR  F+ M +  G +PR EHY C+ D+L 
Sbjct: 359 FHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLG 418

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA  ++  MP  E D V+  ALLGAC++H +++M + + E L+EL P  SG+YV
Sbjct: 419 RAGHLEEAEELIRNMPI-EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYV 477

Query: 451 LSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLL 495
             +N++A+ G W+  A+VR KM+   ++K    S IE+ G  H  L
Sbjct: 478 ALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFL 523



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 107/271 (39%), Gaps = 60/271 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +K A  LFDEM Q   VS   MI+ + +N    +A  LF+ M  S             
Sbjct: 218 GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + + V  SA++D Y K G +DEA +VF+ + + N  
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAI 337

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK-------- 140
           +W+++I  +    + ++    F  M       N V++  ++  C+H GL+ +        
Sbjct: 338 TWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHM 397

Query: 141 LEVIS-------WTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQ 192
           ++V+        +  M   L R    + A E    MP   D V W A++ A     N+  
Sbjct: 398 VKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKM 457

Query: 193 ----ASELFNLMPQRNVWTWNAMIDRYARNG 219
               A  L  L P  +  ++ A+ + YA  G
Sbjct: 458 GERVAETLMELAPH-DSGSYVALSNLYASLG 487


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 254/486 (52%), Gaps = 29/486 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT+ LR  ++  A  +F  M   +R++V+ +A++D YV+ G + EAR++FDE+ E N 
Sbjct: 224 SLITLSLRMGEIDLARRVFDRME--KRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGL 137
            SW+++I+ Y ++   +E  +LF +M               L  + S   +  G   +G 
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 138 IAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           + K+    +V   +++     +       R  F  +  K++V WN+M+  Y   G + + 
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            ELF L+P++N  +W  +I  Y  N      +++ N +  S   PN++T +S+L +C  +
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               + M  H   I+LG + +  +    T  Y         D+ S++  FER+  K+ +S
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCG-----DIGSSKQVFERMPEKNEIS 516

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           WT MI   +  G   +   LF  M + S   P+E+  + VL  CSH GLV+KG   FN M
Sbjct: 517 WTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSM 576

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            + YG KP+ +HY+C+ D+L R+G++ EA   + +  P + +     ALL  C+ + D +
Sbjct: 577 EKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFI-RTIPFQPEANAWAALLSGCKKYKDEK 635

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +A+   ++L +L  ++S  YVL +N++A+ G W + + +RK M E+ +KK    S +EV+
Sbjct: 636 IAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVR 695

Query: 489 GKDHTL 494
            + H+ 
Sbjct: 696 NQVHSF 701



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 207/453 (45%), Gaps = 68/453 (15%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K  E  ++  E    D V    MI+ +++  +L +A  LF  MPE  RN V+ SA+I G 
Sbjct: 71  KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPE--RNEVSWSALISGL 128

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWT 126
           +K GRV+E+   F+     NV SWT+ ISG+ +     E  +LF R+       N V++T
Sbjct: 129 MKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFT 188

Query: 127 TVVLGCAHNG----------LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK 172
           +VV  C   G          L+ K     + ++   L     R     LAR  F +M  +
Sbjct: 189 SVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKR 248

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W A++ AYV+ G++ +A  +F+ MP+RN  +W+AMI RY+++G    A+KL + M 
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308

Query: 233 QSRFMPNET--TCT-SILTSCEGMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVF 284
           Q  F PN +   CT S L S   +   +  H    ++G +++     + +   C C    
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCG--- 365

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------- 323
                    +  RL F+ +  K+VV W +M+  YS +G                      
Sbjct: 366 -------KPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGT 418

Query: 324 ---GF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
              G+       +V  +F  +L SG  P++ TF  VL  C+    ++KG      + +  
Sbjct: 419 IIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK-L 477

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           G +      + L D+  + G +  + +V  +MP
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP 510



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 73/365 (20%)

Query: 27  SCASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           +C S++  F     + +   L     +    SQR I  +  ++  Y+   +  E  ++  
Sbjct: 23  TCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLIL--YLNCRKFAEIDQIVK 80

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           E    ++     +IS Y +   + + R LFD MP   +N VSW+ ++ G    G   ++E
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMP--ERNEVSWSALISGLMKYG---RVE 135

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
              W                  YF + P +++V+W A I+ +V                 
Sbjct: 136 ESMW------------------YFERNPFQNVVSWTAAISGFV----------------- 160

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLA 259
                         RNG    A+KL   + +S   PN+ T TS++ +C  + +    M  
Sbjct: 161 --------------RNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSI 206

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
             L ++ GFE   S++       +        +++ AR  F+R+E +DVVSWTA++ AY 
Sbjct: 207 LGLVVKAGFEHYLSVSNSLITLSLRMG-----EIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
             G   +  R+F  M     + +EI++  +++  S +G  E+  K F+ M +  GFKP  
Sbjct: 262 ETGDLREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMVQE-GFKPNI 316

Query: 380 EHYSC 384
             ++C
Sbjct: 317 SCFAC 321



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 93/332 (28%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A ++FD M + D VS  +++  ++   DL +A  +F  MPE  RN ++ SAMI  
Sbjct: 233 GEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPE--RNEISWSAMIAR 290

Query: 68  YVKAGRVDEARKVFDE-IYEG--------------------------------------N 88
           Y ++G  +EA K+F + + EG                                      +
Sbjct: 291 YSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKD 350

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LI 138
           V+  +SLI  Y K  + D+GR +FD + L+ KNVV W ++V G + NG          LI
Sbjct: 351 VFIGSSLIDLYCKCGKPDDGRLVFD-LILE-KNVVCWNSMVGGYSINGRLEETEELFELI 408

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFV------QMPNK-------------------- 172
            +   +SW T+  G   N   +   E F       Q PNK                    
Sbjct: 409 PEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGM 468

Query: 173 -------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                        DI    A+   Y   G++  + ++F  MP++N  +W  MI   A +G
Sbjct: 469 NVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 220 PEGAAMKLLNLMFQ-SRFMPNETTCTSILTSC 250
               ++ L   M + S   PNE    S+L +C
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFAC 560


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 253/523 (48%), Gaps = 38/523 (7%)

Query: 4   FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           FG    + E+ ++F +M      P+  +  S++        L   E +   + ++  Q N
Sbjct: 390 FGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFN 449

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   S +ID Y K G++D A  +   + E +V SWT+LISGY +     E  + F  M  
Sbjct: 450 VYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM-- 507

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-NAMTKLAREYFVQMPNKDIVA 176
            L   +    +    A              + C G++  N   ++  + +V   ++D+  
Sbjct: 508 -LNRGIQSDNIGFSSA-------------ISACAGIQALNQGRQIHAQSYVSGYSEDLSI 553

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            NA+++ Y   G + +A   F  +  ++  +WN +I  +A++G    A+K+   M +++ 
Sbjct: 554 GNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKL 613

Query: 237 MPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             +  T  S +++   +    +    HA+ I+ GF+ +  ++      Y          +
Sbjct: 614 EASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCG-----SI 668

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             AR  F  +  K+ VSW AMI  YS HG+G +   LF +M + G  P+ +TFVGVLS C
Sbjct: 669 EDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSAC 728

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH GLV KG   F  MS+ +G  P+  HY+C+ D++ RAG +  A + + +MP  E D  
Sbjct: 729 SHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPI-EPDAT 787

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           +   LL AC +H +V + ++  + L+EL+P  S  YVL +N++A  G+WD   Q R+ M 
Sbjct: 788 IWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMR 847

Query: 474 RR-VKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
            R VKK    S IEVK   H       L P+ +  Y  L E++
Sbjct: 848 NRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELN 890



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 187/426 (43%), Gaps = 32/426 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G ++  TK+  +  +PD V+ AS+++    N  L K E L   + ++    +++ E A++
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALL 356

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVV 123
           D YV    +  A ++F      NV  W  ++  + K   + E  R+F +M +K  + N  
Sbjct: 357 DLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQF 416

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           ++ +++  C   G +   E I    + TG + N                 +   + +I  
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFN-----------------VYVCSVLIDM 459

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G +  A  +   + + +V +W A+I  YA++     A+K    M       +    
Sbjct: 460 YAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGF 519

Query: 244 TSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           +S +++C G+    +    HA +   G+ ++ S+       Y          +  A L F
Sbjct: 520 SSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCG-----RIKEAYLEF 574

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           E+++AKD +SW  +I  ++  G+     ++FA+M ++  +    TF   +S  ++   ++
Sbjct: 575 EKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIK 634

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G++   ++ +  GF    E  + L     + G +++A R   +MP  E++ V   A++ 
Sbjct: 635 QGKQIHAMIIKR-GFDSDIEVSNALITFYAKCGSIEDARREFCEMP--EKNDVSWNAMIT 691

Query: 421 ACRLHG 426
               HG
Sbjct: 692 GYSQHG 697



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 179/432 (41%), Gaps = 66/432 (15%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P+    +I ++ +N  +  A  +F  +    ++ V+  AMI G+ + G  +EA  +F E+
Sbjct: 147 PIISNPLIGLYAKNGLIISARKVFDNL--CTKDSVSWVAMISGFSQNGYEEEAIHLFCEM 204

Query: 85  YEGNV----YSWTSLISGYFKARQVDEGRR----------------------LFDRMP-- 116
           +   +    Y ++S++SG  K +  D G +                      L+ RMP  
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264

Query: 117 ---------LKLKNVVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMC 150
                    ++ K+ VS+ +++ G A  G       L  K++          V S  + C
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 151 TGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                    +    Y ++   + D++   A++  YV+  ++  A E+F      NV  WN
Sbjct: 325 ASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWN 384

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRL 266
            M+  + +      + ++   M     +PN+ T  SIL +C   G L+     H   I+ 
Sbjct: 385 VMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT 444

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           GF+      Y C+     +    +LD  +A +    L   DVVSWTA+I  Y+ H    +
Sbjct: 445 GFQFN---VYVCSVLIDMYAKHGKLD--TAHVILRTLTEDDVVSWTALISGYAQHNLFAE 499

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
             + F  ML  G + D I F   +S C+    + +GR+  +  S   G+       + L 
Sbjct: 500 ALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ-IHAQSYVSGYSEDLSIGNALV 558

Query: 387 DILRRAGQVKEA 398
            +  R G++KEA
Sbjct: 559 SLYARCGRIKEA 570



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 162/372 (43%), Gaps = 30/372 (8%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +  + +I  Y K G +  ARKVFD +   +  SW ++ISG+ +    +E   LF  M   
Sbjct: 148 IISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTA 207

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
                   +++V+ GC       K+++        G + +A+       F    + +   
Sbjct: 208 GIFPTPYVFSSVLSGCT------KIKLFD-----VGEQLHALV------FKYGSSLETYV 250

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            NA++T Y    N   A ++F+ M  ++  ++N++I   A+ G    A++L   M +   
Sbjct: 251 CNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYL 310

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  T  S+L++C     + +    H+  I+ G   +  +       YV        D+
Sbjct: 311 KPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS-----DI 365

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +A   F   + ++VV W  M++A+    +  + FR+F +M   G  P++ T+  +L  C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +  G ++ G +    + +  GF+      S L D+  + G++  A  ++  +   E D V
Sbjct: 426 TSVGALDLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT--EDDVV 482

Query: 414 VLGALLGACRLH 425
              AL+     H
Sbjct: 483 SWTALISGYAQH 494



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 36/319 (11%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV- 122
           ++D Y   G +D   KVF+++   +V SW  +ISG+ + +  +    LF  M  +  NV 
Sbjct: 51  LVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEE--NVS 108

Query: 123 ---VSWTTVVLGCA-HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
              +S+ +V+  C+ H   I   E I    +C GL  + +                   N
Sbjct: 109 PTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIIS-----------------N 151

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            +I  Y   G +  A ++F+ +  ++  +W AMI  +++NG E  A+ L   M  +   P
Sbjct: 152 PLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFP 211

Query: 239 NETTCTSILTSCEGML-----ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
                +S+L+ C  +      E +  HAL  + G   ET +     C+ +   +    + 
Sbjct: 212 TPYVFSSVLSGCTKIKLFDVGEQL--HALVFKYGSSLETYV-----CNALVTLYSRMPNF 264

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            SA   F ++++KD VS+ ++I   +  G       LF +M +   KPD +T   +LS C
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 354 SHAGLVEKGRKTFNLMSRA 372
           +  G + KG +  + + +A
Sbjct: 325 ASNGALCKGEQLHSYVIKA 343



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 28/264 (10%)

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V  N ++  Y   G++    ++F  MP R+V +W+ +I  +         + L + M + 
Sbjct: 46  VLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEE 105

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-------- 286
              P E +  S+L +C G            R+G      +  +  CH +           
Sbjct: 106 NVSPTEISFASVLRACSGH-----------RIGIRYAEQIHARIICHGLLCSPIISNPLI 154

Query: 287 --WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
             +     + SAR  F+ L  KD VSW AMI  +S +G+  +   LF  M  +G  P   
Sbjct: 155 GLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPY 214

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVV 402
            F  VLS C+   L + G +   L +  + +    E Y C  L  +  R      A +V 
Sbjct: 215 VFSSVLSGCTKIKLFDVGEQ---LHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVF 271

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
           SKM    +D V   +L+      G
Sbjct: 272 SKM--QSKDEVSFNSLISGLAQQG 293



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 62/279 (22%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S +   G++KEA   F+++   D +S   +I+ F ++     A  +F  M  ++     
Sbjct: 558 VSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF 617

Query: 56  --------------------------------RNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                            +I   +A+I  Y K G +++AR+ F E
Sbjct: 618 FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCE 677

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAK- 140
           + E N  SW ++I+GY +    +E   LF++M    ++ N V++  V+  C+H GL+ K 
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKG 737

Query: 141 ---LEVIS-----------WTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAY- 184
               E +S           +  +   + R      AR++  +MP   D   W  +++A  
Sbjct: 738 LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACT 797

Query: 185 ----VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
               V+ G  A A  L  L P+ +  T+  + + YA +G
Sbjct: 798 VHKNVEVGEFA-AQHLLELEPEDSA-TYVLLSNMYAVSG 834


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/503 (31%), Positives = 249/503 (49%), Gaps = 61/503 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---------NI 58
           G++  A K+FD + +PD     +M+  +        A A++R M E+ R          +
Sbjct: 47  GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYL 106

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +   A + G  +AGR      V    +  + Y   +LI+ + K   +     L D     
Sbjct: 107 LRACAGLPGS-RAGRQVHG-AVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEA--G 162

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             +VV+W+ V+ G A  G +A                      AR+ F +  +KDIV WN
Sbjct: 163 EGDVVAWSAVIAGHAARGDMAA---------------------ARKMFDECTHKDIVCWN 201

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            M+ AY   G M  A ELF+  P+++V +WN +I  YA  G    A+++ + M  + + P
Sbjct: 202 VMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTP 261

Query: 239 NETTCTSILTSC--EGMLE--NMLAHAL--------AIRLGFEQETSLTYKCTCHYVFWD 286
           +E T  S+L+ C   G+L+   M+ H L        +I +G     S+  KC        
Sbjct: 262 DEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVG-NALVSMYAKCG------- 313

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                D+++A   F  ++  DV +W ++I   + HG   Q  R F +ML+    P+EI+F
Sbjct: 314 -----DLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISF 368

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           + VL  CSHAGLVE G+K F LM   YG +P A HYSC+ D+L RAG + EA  +VS M 
Sbjct: 369 LCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVSNMR 428

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             E   VV   LLGACR HG++ +   + E+L+ +   +S  YVL + ++A+ GEW    
Sbjct: 429 C-EPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASSGEWLGVE 487

Query: 467 QVRKKMERR-VKKVASFSQIEVK 488
             R+ M+RR ++K A ++QI+ K
Sbjct: 488 TERRSMDRRGIRKAAGYAQIDRK 510


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 254/486 (52%), Gaps = 29/486 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT+ LR  ++  A  +F  M   +R++V+ +A++D YV+ G + EAR++FDE+ E N 
Sbjct: 224 SLITLSLRMGEIDLARRVFDRME--KRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGL 137
            SW+++I+ Y ++   +E  +LF +M               L  + S   +  G   +G 
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 138 IAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           + K+    +V   +++     +       R  F  +  K++V WN+M+  Y   G + + 
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEX 401

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            ELF L+P++N  +W  +J  Y  N      +++ N +  S   PN++T +S+L +C  +
Sbjct: 402 EELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               + M  H   I+LG + +  +    T  Y         D+ S++  FER+  K+ +S
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCG-----DIGSSKQVFERMPEKNEIS 516

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           WT MI   +  G   +   LF  M + S   P+E+  + VL  CSH GLV+KG   FN M
Sbjct: 517 WTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSM 576

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            + YG KP+ +HY+C+ D+L R+G++ EA   +  + P + +     ALL  C+ + D +
Sbjct: 577 EKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTI-PFQPEANAWAALLSGCKKYKDEK 635

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +A+   ++L +L  ++S  YVL +N++A+ G W + + +RK M E+ +KK    S +EV+
Sbjct: 636 IAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVR 695

Query: 489 GKDHTL 494
            + H+ 
Sbjct: 696 NQVHSF 701



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 207/453 (45%), Gaps = 68/453 (15%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K  E  ++  E    D V    MI+ +++  +L +A  LF  MPE  RN V+ SA+I G 
Sbjct: 71  KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPE--RNEVSWSALISGL 128

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWT 126
           +K GRV+E+   F+     NV SWT+ ISG+ +     E  +LF R+       N V++T
Sbjct: 129 MKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFT 188

Query: 127 TVVLGCAHNG----------LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK 172
           +VV  C   G          L+ K     + ++   L     R     LAR  F +M  +
Sbjct: 189 SVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKR 248

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W A++ AYV+ G++ +A  +F+ MP+RN  +W+AMI RY+++G    A+KL + M 
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308

Query: 233 QSRFMPNET--TCT-SILTSCEGMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVF 284
           Q  F PN +   CT S L S   +   +  H    ++G +++     + +   C C    
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCG--- 365

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------- 323
                    +  RL F+ +  K+VV W +M+  YS +G                      
Sbjct: 366 -------KPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGT 418

Query: 324 ---GF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
              G+       +V  +F  +L SG  P++ TF  VL  C+    ++KG      + +  
Sbjct: 419 IJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK-L 477

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           G +      + L D+  + G +  + +V  +MP
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP 510



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 73/365 (20%)

Query: 27  SCASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           +C S++  F     + +   L     +    SQR I  +  ++  Y+   +  E  ++  
Sbjct: 23  TCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLIL--YLNCRKFAEIDQIVK 80

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           E    ++     +IS Y +   + + R LFD MP   +N VSW+ ++ G    G   ++E
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMP--ERNEVSWSALISGLMKYG---RVE 135

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
              W                  YF + P +++V+W A I+ +V                 
Sbjct: 136 ESMW------------------YFERNPFQNVVSWTAAISGFV----------------- 160

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLA 259
                         RNG    A+KL   + +S   PN+ T TS++ +C  + +    M  
Sbjct: 161 --------------RNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSI 206

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
             L ++ GFE   S++       +        +++ AR  F+R+E +DVVSWTA++ AY 
Sbjct: 207 LGLVVKAGFEHYLSVSNSLITLSLRMG-----EIDLARRVFDRMEKRDVVSWTAILDAYV 261

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
             G   +  R+F  M     + +EI++  +++  S +G  E+  K F+ M +  GFKP  
Sbjct: 262 ETGDLREARRIFDEM----PERNEISWSAMIARYSQSGYAEEALKLFSKMVQE-GFKPNI 316

Query: 380 EHYSC 384
             ++C
Sbjct: 317 SCFAC 321



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 135/332 (40%), Gaps = 93/332 (28%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A ++FD M + D VS  +++  ++   DL +A  +F  MPE  RN ++ SAMI  
Sbjct: 233 GEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPE--RNEISWSAMIAR 290

Query: 68  YVKAGRVDEARKVFDE-IYEG--------------------------------------N 88
           Y ++G  +EA K+F + + EG                                      +
Sbjct: 291 YSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKD 350

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LI 138
           V+  +SLI  Y K  + D+GR +FD + L+ KNVV W ++V G + NG          LI
Sbjct: 351 VFIGSSLIDLYCKCGKPDDGRLVFD-LILE-KNVVCWNSMVGGYSINGRLEEXEELFELI 408

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFV------QMPNK-------------------- 172
            +    SW T+  G   N   +   E F       Q PNK                    
Sbjct: 409 PEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGM 468

Query: 173 -------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                        DI    A+   Y   G++  + ++F  MP++N  +W  MI   A +G
Sbjct: 469 NVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 220 PEGAAMKLLNLMFQ-SRFMPNETTCTSILTSC 250
               ++ L   M + S   PNE    S+L +C
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFAC 560



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FER   ++VVSWTA I  +  +G  F+  +LF R+L+SG +P+++TF  V+  C   G  
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMPPHERDHVVL 415
             G     L+ +A GF    EHY  +++ L     R G++  A RV  +M   +RD V  
Sbjct: 201 GLGMSILGLVVKA-GF----EHYLSVSNSLITLSLRMGEIDLARRVFDRM--EKRDVVSW 253

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
            A+L A    GD+R A  I + + E    S  A +
Sbjct: 254 TAILDAYVETGDLREARRIFDEMPERNEISWSAMI 288


>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
 gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
          Length = 507

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 147 TTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           + +     R+     +R  F ++P + D  A NA+++AY   G +  A  LF  MP RNV
Sbjct: 123 SALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYARCGRVDDAESLFAGMPDRNV 182

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEGMLENMLAHALAI 264
            +W AM+  YA+NG    A++    M++     PNE T +S+L +C  +    LA    +
Sbjct: 183 ISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAV--GALALGRKV 240

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGH 323
                    LT     + +   +     +  A + F  + + +D+ SW +MI+A++ HG 
Sbjct: 241 ERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHGL 300

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +V  LF ++  +G KPD ITFVGV+  C+H GLV++G+  FN M   +G KPR EHY 
Sbjct: 301 WREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIEHYG 360

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+L RAG +KEA  +++ M P E D V+ GALLGAC  HG++ +A+   E+L+ L+P
Sbjct: 361 CMVDLLGRAGLLKEADSLIASM-PMEPDAVIWGALLGACSFHGNLELAEVAVEKLMRLEP 419

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----P 497
            ++   V+ +N++A+ G+WD  AQV K + E+  KK A +S IE+ G+ H  L      P
Sbjct: 420 QNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYSFIELDGRMHKFLVEDKSHP 479

Query: 498 MREMGYVVLKEV 509
           + EM Y  L  +
Sbjct: 480 IYEMVYDTLDSI 491



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 142/317 (44%), Gaps = 42/317 (13%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80
           S  DP   ++++  + R+  L ++  +F  +P    +  A +A++  Y + GRVD+A  +
Sbjct: 115 SSGDPYLASALVASYARSGHLAESRRVFDELP-PHSDAAARNALLSAYARCGRVDDAESL 173

Query: 81  FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------PLKLKNVVSWTTVVLGCA 133
           F  + + NV SWT+++SGY +  + +E  R F  M       P    N V+ ++V+  CA
Sbjct: 174 FAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRP----NEVTVSSVLPACA 229

Query: 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             G +A    +       G+  N                 +   NA++  Y   G++ +A
Sbjct: 230 AVGALALGRKVERYARGRGMLTN-----------------VYVANALVEMYAKCGSIRRA 272

Query: 194 SELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE- 251
             +F  +  QR++ +WN+MI  +A +G     + L + +  +   P+  T   ++ +C  
Sbjct: 273 WMVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTH 332

Query: 252 -GMLE--NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS--ARLAFERLEAK 306
            G+++   +L +++    G +      Y C    +    G   + +S  A +  E     
Sbjct: 333 GGLVDEGKLLFNSMREEFGLKPRIE-HYGCMVD-LLGRAGLLKEADSLIASMPME----P 386

Query: 307 DVVSWTAMILAYSNHGH 323
           D V W A++ A S HG+
Sbjct: 387 DAVIWGALLGACSFHGN 403


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 249/525 (47%), Gaps = 74/525 (14%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR--- 73
           F +M  P+     +MI  F+      +A   +  M E + N++  S      VKA     
Sbjct: 94  FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLE-ESNVLPTSYTFSSLVKACTFMC 152

Query: 74  -VDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            V+  + V   I    +E +++  T+L+  Y K   + E R++FD M             
Sbjct: 153 AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEM------------- 199

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
                      + +  +WT M + L R      AR+ F +MP ++   WN MI  Y   G
Sbjct: 200 ----------CERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLG 249

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+  A  LFN MP +++ +W  MI  Y++N     A+ + + M  +  +P+E T +++ +
Sbjct: 250 NVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVAS 309

Query: 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV--------------- 293
           +C        AH  A+ LG E           HYV    G  LDV               
Sbjct: 310 AC--------AHIGALELGKEIH---------HYVM-SQGLNLDVYIGSALVDMYAKCGS 351

Query: 294 -NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            + + L F +L  K++  W A+I   + HG+  +  R+FA M +    P+ +TF+ +LS 
Sbjct: 352 LDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSA 411

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+HAGLV++GR  F  M+R Y  +P   HY C+ D+L ++G + EA+ ++  M   E + 
Sbjct: 412 CTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM-EFEPNS 470

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++ GALL  C+LHG+  +A+   E+L+ L+P +SG Y L  +++A   +W E A +R  M
Sbjct: 471 IIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMM 530

Query: 473 ERR--VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           + +   KK    S IE++G  H   A     P  +  Y +L E+D
Sbjct: 531 KEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTELD 575



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA K+FDEM + D  +  +M++   R  D+  A  LF  MPE  RN    + MIDGY 
Sbjct: 189 LSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPE--RNTATWNTMIDGYT 246

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTT 127
           + G V+ A  +F+++   ++ SWT++I+ Y + +Q  +   ++  M L   + + V+ +T
Sbjct: 247 RLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMST 306

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
           V   CAH G +   + I    M  GL                 N D+   +A++  Y   
Sbjct: 307 VASACAHIGALELGKEIHHYVMSQGL-----------------NLDVYIGSALVDMYAKC 349

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  +  +F  +  +N++ WNA+I+  A +G    A+++  +M + + MPN  T  SIL
Sbjct: 350 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 409

Query: 248 TSC 250
           ++C
Sbjct: 410 SAC 412



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 56/252 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G V+ A  LF++M   D +S  +MIT + +N     A A++  M      P+        
Sbjct: 249 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 308

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++   SA++D Y K G +D +  +F ++ + N+Y
Sbjct: 309 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 368

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
            W ++I G       ++  R+F  M  +  + N V++ +++  C H GL+ +        
Sbjct: 369 CWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDE-------- 420

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWT 207
                 R+    + R+Y ++    DI  +  M+     +G + +A EL   M  + N   
Sbjct: 421 -----GRSRFLSMTRDYDIR---PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSII 472

Query: 208 WNAMIDRYARNG 219
           W A+++    +G
Sbjct: 473 WGALLNGCKLHG 484


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 230/467 (49%), Gaps = 34/467 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++     +ID Y K G +D+AR++ + +   +V SWTS+I+GY +     E    F  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKD 436

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMPNK 172
           M L       W               + + S  + C G++  R      +R Y V   + 
Sbjct: 437 MQL----FGIWPD------------NIGLASAISACAGIKAMRQGQQIHSRVY-VSGYSA 479

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+  WNA++  Y   G   +A  LF  +  ++  TWN M+  +A++G    A+++   M+
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMY 539

Query: 233 QSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           Q+    N  T  S +++   +    +    HA  I+ G   ET +       Y     G 
Sbjct: 540 QAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLY-----GK 594

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A++ F  +  ++ VSW  +I + S HG G +   LF +M + G KP+++TF+GV
Sbjct: 595 CGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGV 654

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH GLVE+G   F  MS  +G  PR +HY+C+ DIL RAGQ+  A + V +MP   
Sbjct: 655 LAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPV-S 713

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + +V   LL ACR+H ++ + +   + L+EL+P  S +YVL +N +A  G+W     VR
Sbjct: 714 ANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVR 773

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           K M +R V+K    S IEVK   H       L P+    Y  L ++D
Sbjct: 774 KMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLD 820



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 164/347 (47%), Gaps = 24/347 (6%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +A + +ID Y K G V  AR+VF+++   +  SW +++SGY +    +E   L+ +M   
Sbjct: 78  IAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM--H 135

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
              VV  T  VL            V+S  T     E+  +     + + Q    + V  N
Sbjct: 136 CSGVVP-TPYVLS----------SVLSACTKAALFEQGRLVH--AQVYKQGSCSETVVGN 182

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y+  G+++ A  +F+ MP  +  T+N +I R+A+ G   +A+++   M  S + P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 239 NETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +  T  S+L +C  + +       H+  ++ G   +  +       YV    G  ++   
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYV--KCGVIVE--- 297

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F+  +  +VV W  M++AY       + F LF +M+ +G +P+E T+  +L  C++
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           AG +  G +  +L+S   GF+        L D+  + G + +A R++
Sbjct: 358 AGEINLGEQ-IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 162/392 (41%), Gaps = 61/392 (15%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           +++ + S  + V   ++I ++LR   L  AE +F  MP   R  V  + +I  + + G  
Sbjct: 168 QVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDR--VTFNTLISRHAQCGNG 225

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           + A ++F+E+    +  WT                           + V+  +++  CA 
Sbjct: 226 ESALEIFEEM---RLSGWT--------------------------PDCVTIASLLAACAS 256

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
            G + K + +    +  G+                 + D +   +++  YV  G + +A 
Sbjct: 257 IGDLNKGKQLHSYLLKAGM-----------------SPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           E+F    + NV  WN M+  Y +      +  L   M  +   PNE T   +L +C    
Sbjct: 300 EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 255 ENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
           E  L    H L+I+ GFE +  ++      Y  + W     ++ AR   E LEAKDVVSW
Sbjct: 360 EINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW-----LDKARRILEVLEAKDVVSW 414

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           T+MI  Y  H    +    F  M   G  PD I     +S C+    + +G++   + SR
Sbjct: 415 TSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQ---IHSR 471

Query: 372 AY--GFKPRAEHYSCLADILRRAGQVKEAMRV 401
            Y  G+      ++ L ++  R G+ KEA  +
Sbjct: 472 VYVSGYSADVSIWNALVNLYARCGRSKEAFSL 503



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 12/252 (4%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +D +A N +I  Y   G + +A  +F  +  R+  +W AM+  YARNG    A+ L + 
Sbjct: 74  GEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQ 133

Query: 231 MFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M  S  +P     +S+L++C       +  L HA   + G   ET +       Y+ +  
Sbjct: 134 MHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFG- 192

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                ++ A   F  +   D V++  +I  ++  G+G     +F  M  SG  PD +T  
Sbjct: 193 ----SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIA 248

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +L+ C+  G + KG++  + + +A G  P       L D+  + G + EA+ +      
Sbjct: 249 SLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGVIVEALEI---FKS 304

Query: 408 HERDHVVLGALL 419
            +R +VVL  L+
Sbjct: 305 GDRTNVVLWNLM 316


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 241/524 (45%), Gaps = 60/524 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G +  A  +F ++  P      SMI  F+ NH+   +  L+R + E+             
Sbjct: 41  GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   + +    + ++  YV    +    KVFD I   NV 
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVV 160

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +WT LI+GY    Q  E  ++F  M       N ++    ++ CA +      +   W  
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARS---RDFDTGQWV- 216

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
                    + K   + F+   N +I+   A++  Y   G+   A +LFN MPQRN+ +W
Sbjct: 217 ------HQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSW 270

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
           N+MI+ Y +      A+ L   M+ S   P++ T  S+L+ C  +    L    HA   +
Sbjct: 271 NSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXK 330

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G   + SL       Y          + SA+  F  L+ +DVV WT+MI   + HG G 
Sbjct: 331 TGIGTDISLATALLDMYAKTG-----GLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGN 385

Query: 326 QVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
           +   +F  M + S   PD IT++GVL  CSH GLVE+ +K F LM+  Y   P  EHY C
Sbjct: 386 EALGMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGC 445

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L R+G   EA R++  M   + +  + GALL  C++H ++ +A+ + ERL EL+  
Sbjct: 446 MVDLLSRSGHFGEAERLMETMAI-QPNISIXGALLYGCQIHENLXVANQVKERLTELESC 504

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEV 487
            SGA+VL +N++A  G W++    RK M+ +R+ K+   S +E+
Sbjct: 505 QSGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITKIIGHSSVEM 548


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 249/525 (47%), Gaps = 74/525 (14%)

Query: 17  FDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR--- 73
           F +M  P+     +MI  F+      +A   +  M E + N++  S      VKA     
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLE-ESNVLPTSYTFSSLVKACTFMC 249

Query: 74  -VDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            V+  + V   I    +E +++  T+L+  Y K   + E R++FD M             
Sbjct: 250 AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEM------------- 296

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
                      + +  +WT M + L R      AR+ F +MP ++   WN MI  Y   G
Sbjct: 297 ----------CERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLG 346

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N+  A  LFN MP +++ +W  MI  Y++N     A+ + + M  +  +P+E T +++ +
Sbjct: 347 NVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVAS 406

Query: 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV--------------- 293
           +C        AH  A+ LG E           HYV    G  LDV               
Sbjct: 407 AC--------AHIGALELGKEIH---------HYVM-SQGLNLDVYIGSALVDMYAKCGS 448

Query: 294 -NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
            + + L F +L  K++  W A+I   + HG+  +  R+FA M +    P+ +TF+ +LS 
Sbjct: 449 LDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSA 508

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C+HAGLV++GR  F  M+R Y  +P   HY C+ D+L ++G + EA+ ++  M   E + 
Sbjct: 509 CTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSM-EFEPNS 567

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
           ++ GALL  C+LHG+  +A+   E+L+ L+P +SG Y L  +++A   +W E A +R  M
Sbjct: 568 IIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMM 627

Query: 473 ERR--VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           + +   KK    S IE++G  H   A     P  +  Y VL E+D
Sbjct: 628 KEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFVLTELD 672



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 21/243 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA K+FDEM + D  +  +M++   R  D+  A  LF  MPE  RN    + MIDGY 
Sbjct: 286 LSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPE--RNTATWNTMIDGYA 343

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTT 127
           + G V+ A  +F+++   ++ SWT++I+ Y + +Q  +   ++  M L   + + V+ +T
Sbjct: 344 RLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMST 403

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
           V   CAH G +   + I    M  GL                 N D+   +A++  Y   
Sbjct: 404 VASACAHIGALELGKEIHHYVMSQGL-----------------NLDVYIGSALVDMYAKC 446

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  +  +F  +  +N++ WNA+I+  A +G    A+++  +M + + MPN  T  SIL
Sbjct: 447 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 506

Query: 248 TSC 250
           ++C
Sbjct: 507 SAC 509



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 56/252 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G V+ A  LF++M   D +S  +MIT + +N     A A++  M      P+        
Sbjct: 346 GNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVA 405

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++   SA++D Y K G +D +  +F ++ + N+Y
Sbjct: 406 SACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLY 465

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
            W ++I G       ++  R+F  M  +  + N V++ +++  C H GL+ +        
Sbjct: 466 CWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDE-------- 517

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWT 207
                 R+    + R+Y ++    DI  +  M+     +G + +A EL   M  + N   
Sbjct: 518 -----GRSRFLSMTRDYDIR---PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSII 569

Query: 208 WNAMIDRYARNG 219
           W A+++    +G
Sbjct: 570 WGALLNGCKLHG 581


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 243/503 (48%), Gaps = 36/503 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP   +S++  +LR      A ALF  MP  QR +V  SA++  +   G  + A ++ +E
Sbjct: 51  DPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEE 110

Query: 84  I-----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHN 135
           +      E NV +W  L+SG  ++ +  +       M    L   +    +  +      
Sbjct: 111 MRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDV 170

Query: 136 GLIAKLEVISWTTMCTGLERNA--MTKLAREY------------FVQMPNKDIVAWNAMI 181
           GL++  + +    +  G   +A  +T L   Y            F +  + D+ + NA+I
Sbjct: 171 GLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALI 230

Query: 182 TAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
                   + +A  LF     R    NV +W +++    +NG +  A++    M      
Sbjct: 231 AGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTE 290

Query: 238 PNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN  T   +L    +   ++    AH  A+R GF  +  ++      Y          V 
Sbjct: 291 PNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCG-----RVK 345

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AR+ F+ + +++VVSW AMI  Y+ +G       +F  MLK   KPD +TF  +L+ C+
Sbjct: 346 DARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACT 405

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
            AGL E+GR  F  M   YG  PR EHY+C+  +L RAG++ EA  ++S M P E D  +
Sbjct: 406 QAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDM-PFEPDAYI 464

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            G+LLG+CR+HG+V +A+   E+L  L+P ++G YVL +N++A++  WD   +VR+ M +
Sbjct: 465 WGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKD 524

Query: 474 RRVKKVASFSQIEVKGKDHTLLA 496
             +KK    S IE+K K H LLA
Sbjct: 525 VGLKKEKGCSWIEIKNKVHMLLA 547



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 1   TSQFGC---TGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDL--PKAEALFRAM 51
           TS   C    GK  EA + F EM    ++P+ V+   ++  F     L   ++   F   
Sbjct: 262 TSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALR 321

Query: 52  PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
                ++   SA++D Y K GRV +AR +FD +   NV SW ++I GY    +      +
Sbjct: 322 KGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWM 381

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           F  M LK K                   K +++++T +     +  +T+  R YF +M N
Sbjct: 382 FHSM-LKCKQ------------------KPDMVTFTCLLAACTQAGLTEEGRHYFKEMHN 422

Query: 172 KDIVA-----WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNG----PE 221
           +  V+     +  M+T    AG + +A +L + MP + + + W +++     +G     E
Sbjct: 423 EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAE 482

Query: 222 GAAMKLLNL 230
            AA KL +L
Sbjct: 483 VAAEKLFHL 491


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 236/503 (46%), Gaps = 73/503 (14%)

Query: 39  HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR--VDEA------RKVFDEIYEGNVY 90
           H     +AL   M   + N++  S      +KA    VD A        V+   ++ +V+
Sbjct: 53  HCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVF 112

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
             T+LI  Y     V   RR+FD MP +                       +V +WTTM 
Sbjct: 113 VQTTLIEFYSTFGDVGGSRRVFDDMPER-----------------------DVFAWTTMI 149

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           +   R+     A   F +MP K++  WNAMI  Y   GN   A  LFN MP R++ +W  
Sbjct: 150 SAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTT 209

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270
           M++ Y+RN      + L + +     +P+E T T+++++C        AH  A+ LG E 
Sbjct: 210 MMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISAC--------AHLGALALGKEV 261

Query: 271 ETSLTYKCTCHYVFWDWGFQLDV----------------NSARLAFERLEAKDVVSWTAM 314
              L  +          GF LDV                + A L F +L+ K++  W  +
Sbjct: 262 HLYLVLQ----------GFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCI 311

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I   + HG+  +  R+F  M +   +P+ +TF+ +L+ C+HAG +E+GR+ F  M + Y 
Sbjct: 312 IDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYC 371

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
             P+ EHY C+ D+L +AG +++A+ ++  M   E +  + GALL  C+LH ++ +A   
Sbjct: 372 IAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTV-EPNSFIWGALLNGCKLHKNLEIAHIA 430

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR--VKKVASFSQIEVKGKDH 492
            + L+ L+PS+SG Y L  N++A    W+E A++R  M+     K+    S +E+    H
Sbjct: 431 VQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVH 490

Query: 493 TLLA-----PMREMGYVVLKEVD 510
              A     P     +++L E+D
Sbjct: 491 LFAASDTYHPSYSQLHLLLAELD 513



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 187/432 (43%), Gaps = 74/432 (17%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  + ++FD+M + D  +  +MI+  +R+ D+  A  LF  MPE  +N+   +AMIDG
Sbjct: 125 GDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPE--KNVATWNAMIDG 182

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
           Y K G  + A  +F+++   ++ SWT++++ Y + ++  E   LF  +  K  + + V+ 
Sbjct: 183 YGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTM 242

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV-QMPNKDIVAWNAMITAY 184
           TTV+  CAH G +                  A+ K    Y V Q  + D+   +++I  Y
Sbjct: 243 TTVISACAHLGAL------------------ALGKEVHLYLVLQGFDLDVYIGSSLIDMY 284

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G++  A  +F  +  +N++ WN +ID  A +G    A+++   M + R  PN  T  
Sbjct: 285 AKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFI 344

Query: 245 SILTSCE----------------------------GMLENMLAHALAIRLGFEQETSLTY 276
           SILT+C                             G + ++L+ A  +    E   ++T 
Sbjct: 345 SILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTV 404

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           +       + WG  L  N  +L  + LE   +     M+L  SN GH    + L   M  
Sbjct: 405 EPNS----FIWGALL--NGCKL-HKNLEIAHIAVQNLMVLEPSNSGH----YSLLVNMYA 453

Query: 337 SGTKPDEITFV-------GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA--- 386
              + +E+  +       GV   C  +  VE   KT +L + +  + P       L    
Sbjct: 454 EENRWNEVAKIRTTMKDLGVEKRCPGSSWVEI-NKTVHLFAASDTYHPSYSQLHLLLAEL 512

Query: 387 -DILRRAGQVKE 397
            D LR AG V E
Sbjct: 513 DDQLRLAGYVPE 524


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/500 (30%), Positives = 251/500 (50%), Gaps = 31/500 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           GK+K+A ++  + S P   +   +I        L  A  + R + +  S ++    + +I
Sbjct: 60  GKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLI 119

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNV 122
             Y   G VD ARKVFD+  +  +Y W +L      A   +E   L+   +R+ ++  + 
Sbjct: 120 GMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDR 178

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            ++T V+  C  +             +  G E +A   L R  +    +  +     ++ 
Sbjct: 179 FTYTYVLKACVASECTV-------NHLMKGKEIHA--HLTRRGY----SSHVYIMTTLVD 225

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNE 240
            Y   G +  AS +F  MP RNV +W+AMI  YA+NG    A++    M +      PN 
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285

Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  S+L +C  +    +  L H   +R G +    +       Y     G    +   +
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMY-----GRCGKLEVGQ 340

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+R+  +DVVSW ++I +Y  HG+G +  ++F  ML +G  P  +TFV VL  CSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G++ F  M R +G KP+ EHY+C+ D+L RA ++ EA ++V  M   E    V G+
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT-EPGPKVWGS 459

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-V 476
           LLG+CR+HG+V +A+    RL  L+P ++G YVL A+++A    WDE  +V+K +E R +
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519

Query: 477 KKVASFSQIEVKGKDHTLLA 496
           +K+     +EV+ K ++ ++
Sbjct: 520 QKLPGRCWMEVRRKMYSFVS 539


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/493 (29%), Positives = 235/493 (47%), Gaps = 52/493 (10%)

Query: 38  NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLIS 97
           NH L + +A    +  +Q +  A   +    +    +  AR +FD +   NVY +T++I+
Sbjct: 69  NH-LKQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESPNVYLYTAMIT 127

Query: 98  GYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
            Y           L+  M  + +   N   +  V+  C          ++    + +G E
Sbjct: 128 AYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFE 187

Query: 155 RNAMTKLA---------------REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           +  + + A               R  F +M  +++V+W AMI+ Y   G +  A  LF  
Sbjct: 188 QYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEE 247

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF-------MPNETTCTSILTSC-- 250
           MP+R+V +WNA+I  Y +NG    A+ L   M             PN+ T    L++C  
Sbjct: 248 MPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGH 307

Query: 251 EGMLE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVNSARLAFER 302
            GML      H    R G   ++ ++        KC C            +  AR  F+R
Sbjct: 308 TGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGC------------LKEARRVFDR 355

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK--SGTKPDEITFVGVLSDCSHAGLVE 360
              + + SW +MI   + HG       +F  M+   SG KPDE+TF+G+L+ C+H GLVE
Sbjct: 356 TLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVE 415

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           KG   F LM++ YG +P+ EHY CL D+L RAGQ +EAM VV  M   E D V+ G+LL 
Sbjct: 416 KGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRI-EPDEVIWGSLLN 474

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKV 479
            C++HG   +A++  ++LI++ P++ G  ++ AN++   G+WDE  +VRK + E+   K 
Sbjct: 475 GCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKT 534

Query: 480 ASFSQIEVKGKDH 492
              S IE+  + H
Sbjct: 535 PGCSWIEIDNQVH 547



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 155/378 (41%), Gaps = 76/378 (20%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------------------ 51
           +FD +  P+     +MIT +  + D   A  L+R M                        
Sbjct: 110 IFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVV 169

Query: 52  -PESQRNI-------------VAESAMIDGYVKA-GRVDEARKVFDEIYEGNVYSWTSLI 96
            P S R +             V ++A++D Y++    V+ AR +FDE+ E NV SWT++I
Sbjct: 170 GPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMI 229

Query: 97  SGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK----------LEVISW 146
           SGY +  Q+     LF+ MP   ++V SW  ++ G   NGL  +          +E  +W
Sbjct: 230 SGYTRLGQIGNAVLLFEEMP--ERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAW 287

Query: 147 ---------TTMC--TGLERNAMTKLAR----EYFVQMPNKDIVAWNAMITAYVDAGNMA 191
                    T +C  +      M +L +      +      D    NA++  Y   G + 
Sbjct: 288 GQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLK 347

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTS 249
           +A  +F+   +R++ +WN+MI+  A +G    A+ +   M    S   P+E T   +L +
Sbjct: 348 EARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNA 407

Query: 250 CE--GMLEN--MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           C   G++E   +    +    G E +    Y C    +     F+  +   R    R+E 
Sbjct: 408 CTHGGLVEKGWLYFELMTQNYGIEPQIE-HYGCLVDLLGRAGQFEEAMEVVRGM--RIEP 464

Query: 306 KDVVSWTAMILAYSNHGH 323
            +V+ W +++     HGH
Sbjct: 465 DEVI-WGSLLNGCKIHGH 481



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 48/181 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------------PES 54
           G++  A  LF+EM + D  S  ++I  + +N    +A +LFR M             P  
Sbjct: 236 GQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQ 295

Query: 55  QRNIVAES-------------------------------AMIDGYVKAGRVDEARKVFDE 83
              + + S                               A++D Y K G + EAR+VFD 
Sbjct: 296 VTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDR 355

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIA 139
             E ++ SW S+I+      Q      +F+ M      V    V++  ++  C H GL+ 
Sbjct: 356 TLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVE 415

Query: 140 K 140
           K
Sbjct: 416 K 416


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 219/440 (49%), Gaps = 26/440 (5%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+  ++ ++  Y  +G ++   KVFD+    ++ SWT+LI  Y K     E    F RM 
Sbjct: 172 NLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM- 230

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM---PNKD 173
                             N    ++ ++   + C+ L    + K    Y        + D
Sbjct: 231 ------------------NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSD 272

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   NA++  Y+  G    A +LF+LMP +N+ +WN+MI   A  G    A+ +   M  
Sbjct: 273 VFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQT 332

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               P+  T   +L SC  + +  L   +   +      +  Y        +     +D 
Sbjct: 333 MGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSID- 391

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A + F+ ++ KDV S+TAMI+ ++ HG   +   +F+ M + G +PD +T VGVLS C
Sbjct: 392 -QAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSAC 450

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SHAGL+E+GR+ F  MSR Y  +P+ EHY C+ D+L RAG + EA    +KMP    D  
Sbjct: 451 SHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPI-VPDAS 509

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           V G+LLGAC++H  V + + + ++LIE++P   GAY+L +N++++   W +  + RK M+
Sbjct: 510 VWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMK 569

Query: 474 R-RVKKVASFSQIEVKGKDH 492
           +  +KK    S IEV G  H
Sbjct: 570 QNNIKKTPGCSSIEVDGMVH 589



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 27/210 (12%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAE 61
           G  KEA  +F  M     +PD V+   ++       DL   + +   + ++         
Sbjct: 318 GLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVA 377

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK 120
           +A++D Y K G +D+A  VF  +   +VYS+T++I G+    + D    +F  MP + ++
Sbjct: 378 NALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVR 437

Query: 121 -NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            + V+   V+  C+H GL+ +              R     ++R Y +Q P  +   +  
Sbjct: 438 PDHVTLVGVLSACSHAGLLEE-------------GRRHFQDMSRLYHLQ-PQTE--HYGC 481

Query: 180 MITAYVDAGNMAQASELFN---LMPQRNVW 206
           M+     AG +++A    N   ++P  +VW
Sbjct: 482 MVDLLGRAGLISEAEAFTNKMPIVPDASVW 511


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 247/504 (49%), Gaps = 33/504 (6%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRN 57
           +G    + E+ K+F +M     +P+  +  S++     LR  DL +           Q N
Sbjct: 448 YGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFN 507

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   S +ID Y K G++D A K+F  + E +V SWT++I+GY +  +  E   LF  M  
Sbjct: 508 VYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQD 567

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER-NAMTKLAREYFVQMPNKDIVA 176
           +               H+  I     IS    C G++  N   ++  +  V   + D+  
Sbjct: 568 Q-------------GIHSDNIGFASAIS---ACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            NA+++ Y   G +  A   F+ +  ++  +WN++I  +A++G    A+ L + M ++  
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
             N  T    +++   +    L    HA+ I+ G + ET ++      Y         ++
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCG-----NI 726

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           + A   F  +  K+ +SW AM+  YS HGHGF+   LF  M + G  P+ +TFVGVLS C
Sbjct: 727 DDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSAC 786

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH GLV++G K F  M   +G  P+ EHY+C+ D+L R+G +  A R V +MP  + D +
Sbjct: 787 SHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPI-QPDAM 845

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           V   LL AC +H ++ + ++    L+EL+P  S  YVL +N++A  G+W    + R+ M 
Sbjct: 846 VCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMK 905

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA 496
           +R VKK    S IEV    H   A
Sbjct: 906 DRGVKKEPGRSWIEVNNSVHAFFA 929



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 167/377 (44%), Gaps = 50/377 (13%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           +ID Y K G ++ A+KVFD + + +  SW +++SG  ++   +E   LF +M        
Sbjct: 211 LIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPT 270

Query: 116 PLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           P    +V+S  T V    +G   +GL+ K      T +C                     
Sbjct: 271 PYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC--------------------- 309

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                 NA++T Y   GN   A ++FN M QR+  ++N++I   ++ G    A++L   M
Sbjct: 310 ------NALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 232 FQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 P+  T  S+L++C     +L     H+ AI+ G   +  L       YV     
Sbjct: 364 CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS-- 421

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+ +A   F   E ++VV W  M++AY    +  + F++F +M   G +P++ T+  
Sbjct: 422 ---DIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPS 478

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  CS    V+ G +    + +  GF+      S L D+  + G++  A+++  ++   
Sbjct: 479 ILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-- 535

Query: 409 ERDHVVLGALLGACRLH 425
           E+D V   A++     H
Sbjct: 536 EKDVVSWTAMIAGYAQH 552



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 175/431 (40%), Gaps = 39/431 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN 57
           SQ GC    +EA  LF +M      P P   +S+++   +       E L   + +   +
Sbjct: 247 SQSGCE---EEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS 303

Query: 58  I--VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +     +A++  Y + G    A +VF+ + + +  S+ SLISG  +    D+   LF +M
Sbjct: 304 LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDI 174
                         L C     +    V S  + C+ +    + K    Y ++   + DI
Sbjct: 364 -------------CLDCLKPDCVT---VASLLSACSSVGALLVGKQFHSYAIKAGMSSDI 407

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +   A++  YV   ++  A E F      NV  WN M+  Y        + K+   M   
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
              PN+ T  SIL +C  +    L    H   ++ GF+      +      V  D   +L
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQ------FNVYVSSVLIDMYAKL 521

Query: 292 -DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ A   F RL+ KDVVSWTAMI  Y+ H    +   LF  M   G   D I F   +
Sbjct: 522 GKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAI 581

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C+    + +G++  +  +   G+       + L  +  R G+V++A     K+    +
Sbjct: 582 SACAGIQALNQGQQ-IHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI--FSK 638

Query: 411 DHVVLGALLGA 421
           D++   +L+  
Sbjct: 639 DNISWNSLISG 649



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 20/262 (7%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           ++V    ++  Y+  G++  A  +F+ MP R +  WN ++ R+      G  + L   M 
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRML 161

Query: 233 QSRFMPNETTCTSILTSCEG------MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           Q +  P+E T   +L  C G       +E +  HA  I  G+E   SL        +++ 
Sbjct: 162 QEKVKPDERTYAGVLRGCGGGDVPFHCVEKI--HARTITHGYE--NSLFVCNPLIDLYFK 217

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            GF   +NSA+  F+ L+ +D VSW AM+   S  G   +   LF +M  SG  P    F
Sbjct: 218 NGF---LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIF 274

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVVSK 404
             VLS C+     + G +   L+ +  GF    E Y C  L  +  R G    A +V + 
Sbjct: 275 SSVLSACTKVEFYKVGEQLHGLVLKQ-GFS--LETYVCNALVTLYSRLGNFIPAEQVFNA 331

Query: 405 MPPHERDHVVLGALLGACRLHG 426
           M   +RD V   +L+      G
Sbjct: 332 ML--QRDEVSYNSLISGLSQQG 351



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 28/307 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-N 121
           ++D Y+  G +D A  VFDE+    +  W  ++  +   +       LF RM   K+K +
Sbjct: 109 LMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPD 168

Query: 122 VVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
             ++  V+ GC    +    +E I   T+  G E +                 +   N +
Sbjct: 169 ERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENS-----------------LFVCNPL 211

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +  A ++F+ + +R+  +W AM+   +++G E  A+ L   M  S   P  
Sbjct: 212 IDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTP 271

Query: 241 TTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
              +S+L++C   E        H L ++ GF  ET +     C+ +   +    +   A 
Sbjct: 272 YIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYV-----CNALVTLYSRLGNFIPAE 326

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F  +  +D VS+ ++I   S  G+  +   LF +M     KPD +T   +LS CS  G
Sbjct: 327 QVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVG 386

Query: 358 LVEKGRK 364
            +  G++
Sbjct: 387 ALLVGKQ 393


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 253/514 (49%), Gaps = 53/514 (10%)

Query: 9   KVKEATKLFDE-MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
            VK+A KL DE +   + VS   ++T +L+++ +     LF  MP   ++ V+ + M+ G
Sbjct: 23  NVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMP--LKDAVSWNIMLSG 80

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA---RQVDEGRRLFDRMPLKLK---N 121
           + +    +   + F ++    V      IS   +A    ++D   R    +   L    N
Sbjct: 81  FQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLN 140

Query: 122 VVSWTTVV-----------LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           V   ++++           LG A N +  K +V SW  + +          A+  F QMP
Sbjct: 141 VFVGSSLIRAYAGLKEEEALGRAFNDISMK-DVTSWNALVSSYMELGKFVDAQTAFDQMP 199

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            ++I++W  ++  YV    + +A  +F+ M +RNV +W AMI  Y +N     A+KL  L
Sbjct: 200 QRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVL 259

Query: 231 MFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQE----TSLT---YKCTC 280
           MF++   PN  T +S+L +C G   ++  +  H   I+ G   +    TSL     KC  
Sbjct: 260 MFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCG- 318

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                      D+++A   FE +  K++VSW A+I  Y++HG   +    F RM   GT 
Sbjct: 319 -----------DMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGT- 366

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PDE+TFV VLS C HAGLVE+G K F  M   YG +   EHYSC+ D+  RAG+  EA  
Sbjct: 367 PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAEN 426

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  M P E D V+ GALL AC LH ++ + +Y  ER+  L+ S   +Y + + +   +G
Sbjct: 427 LIKNM-PFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKG 485

Query: 461 EWDEFAQVRKKM-ERRVKK-------VASFSQIE 486
            W    ++R  M ER +KK        A FS+++
Sbjct: 486 VWSSVNELRDTMKERGIKKQTPGDKNCAQFSKLD 519


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/501 (31%), Positives = 244/501 (48%), Gaps = 42/501 (8%)

Query: 5   GCT--GKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEALFRAMPESQRN- 57
           GC   G  + A ++F EM+      D  +  S++    +  DL    A+ R + +     
Sbjct: 183 GCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGD 242

Query: 58  -IVAESAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            +  ++A+ID Y K   +++AR+VFD   ++ +V SWT++I  Y    +  E   L  +M
Sbjct: 243 YVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQM 302

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DI 174
              L +  +W         NG+     ++   + C  +      K      +++  K DI
Sbjct: 303 ---LMSGAAWP--------NGVT----MVYLLSACASMPSGKHAKCTHALCIRLGLKSDI 347

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLM 231
               A+I AY   G M    +L  L  +R  W   TWNA +  Y  +G E  A++L   M
Sbjct: 348 AVETALIDAYARCGKM----KLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRM 403

Query: 232 FQSRFMPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 P+  T  SIL +      + E    H   + LGF + T +        V+   G
Sbjct: 404 IAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLI--DVYSKAG 461

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+++A   F+ L  KDVV+WT +I  Y  HGH      L+ RM++SG KP+ +T   
Sbjct: 462 ---DLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIAT 518

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  CSHAG++++G K F  M   +G  P  EHYSCL D+L RAG+++EA R++  M P 
Sbjct: 519 LLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDM-PF 577

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E    V GALLGAC LH +V   +   +RL +L P ++G+YVL  N++AA   W +   V
Sbjct: 578 EPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDV 637

Query: 469 RKKM-ERRVKKVASFSQIEVK 488
           R+ M ER + K    S +E +
Sbjct: 638 RRMMVERGLLKEPGSSLVEAR 658



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 205/494 (41%), Gaps = 42/494 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           G+   A  L  +M QP PVS + S++  +       +A A++ AM          +A   
Sbjct: 59  GRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDHLTFPFAAKAC 118

Query: 67  GYVKAGRVDEAR--KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
             ++ GR   A   +     + G+ Y   +LIS Y     V     +F  M  + + VVS
Sbjct: 119 AGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM--RNRTVVS 176

Query: 125 WTTVVLGCAHNGLIAK-LEV----------ISWTTMCTGLERNAMTK---LAREYFVQMP 170
           W  V+ GC  NG   + LEV          I   T+ + L   A  K     R     + 
Sbjct: 177 WNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVE 236

Query: 171 NK---DIVAW-NAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAM 225
           +K   D VA  NA+I  Y    ++  A  +F+     ++V +W AMI  Y  N     A+
Sbjct: 237 DKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAI 296

Query: 226 KL-LNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCH 281
            L   ++      PN  T   +L++C  M     A   HAL IRLG + + ++       
Sbjct: 297 SLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDA 356

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y          +   RL  ER   +   +W A +  Y+  G   +   LF RM+    +P
Sbjct: 357 YARCG-----KMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRP 410

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D  T   +L   + +  +++G K  +      GF    E  + L D+  +AG +  A  +
Sbjct: 411 DSATMASILPAYAESADLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWAL 469

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL--QPSS-SGAYVLSANVHAA 458
              +P  E+D V    ++    +HG  R A  + +R++E   +P++ + A +L A  HA 
Sbjct: 470 FQWLP--EKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHA- 526

Query: 459 RGEWDEFAQVRKKM 472
            G  DE  +V K M
Sbjct: 527 -GMIDEGIKVFKDM 539


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 255/488 (52%), Gaps = 29/488 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT+ LR  ++  A  +F  M   +R++V+ +A++D YV+ G + EAR++FDE+ E N 
Sbjct: 224 SLITLSLRMGEIDLARRVFDRM--EKRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTTVVLGCAHNGL 137
            SW+++I+ Y ++   +E  +LF +M               L  + S   +  G   +G 
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 138 IAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           + K+    +V   +++     +       R  F  +  K++V WN+M+  Y   G + + 
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            ELF L+P++N  +W  +I  Y  N      +++ N +  S   PN++T +S+L +C  +
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 254 L---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
               + M  H   I+LG + +  +    T  Y         D+ S++  FER+  K+ +S
Sbjct: 462 ASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCG-----DIGSSKQVFERMPEKNEIS 516

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           WT MI   +  G   +   LF  M + S   P+E+  + VL  CSH GLV+KG   FN M
Sbjct: 517 WTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSM 576

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
            + YG KP+ +HY+C+ D+L R+G++ EA   +  + P + +     ALL  C+ + D +
Sbjct: 577 EKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTI-PFQPEANAWAALLSGCKKYKDEK 635

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +A+   ++L +L  ++S  YVL +N++A+ G W + + +RK M E+ +KK    S +EV+
Sbjct: 636 IAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVR 695

Query: 489 GKDHTLLA 496
            + H+  +
Sbjct: 696 NQVHSFYS 703



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 207/453 (45%), Gaps = 68/453 (15%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           K  E  ++  E    D V    MI+ +++  +L +A  LF  MPE  RN V+ SA+I G 
Sbjct: 71  KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPE--RNEVSWSALISGL 128

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWT 126
           +K GRV+E+   F+     NV SWT+ ISG+ +     E  +LF R+       N V++T
Sbjct: 129 MKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFT 188

Query: 127 TVVLGCAHNG----------LIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNK 172
           +VV  C   G          L+ K     + ++   L     R     LAR  F +M  +
Sbjct: 189 SVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKR 248

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W A++ AYV+ G++ +A  +F+ MP+RN  +W+AMI RY+++G    A+KL + M 
Sbjct: 249 DVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMV 308

Query: 233 QSRFMPNET--TCT-SILTSCEGMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVF 284
           Q  F PN +   CT S L S   +   +  H    ++G +++     + +   C C    
Sbjct: 309 QEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCG--- 365

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------- 323
                    +  RL F+ +  K+VV W +M+  YS +G                      
Sbjct: 366 -------KPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGT 418

Query: 324 ---GF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
              G+       +V  +F  +L SG  P++ TF  VL  C+    ++KG      + +  
Sbjct: 419 IIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIK-L 477

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           G +      + L D+  + G +  + +V  +MP
Sbjct: 478 GIQYDIFVGTALTDMYAKCGDIGSSKQVFERMP 510



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 69/334 (20%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           SQR I  +  ++  Y+   +  E  ++  E    ++     +IS Y +   + + R LFD
Sbjct: 54  SQRYIAIKLLIL--YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFD 111

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            MP   +N VSW+ ++ G    G   ++E   W                  YF + P ++
Sbjct: 112 EMP--ERNEVSWSALISGLMKYG---RVEESMW------------------YFERNPFQN 148

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+W A I+ +V                               RNG    A+KL   + +
Sbjct: 149 VVSWTAAISGFV-------------------------------RNGLNFEALKLFFRLLE 177

Query: 234 SRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           S   PN+ T TS++ +C  + +    M    L ++ GFE   S++       +       
Sbjct: 178 SGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMG---- 233

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            +++ AR  F+R+E +DVVSWTA++ AY   G   +  R+F  M     + +EI++  ++
Sbjct: 234 -EIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM----PERNEISWSAMI 288

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
           +  S +G  E+  K F+ M +  GFKP    ++C
Sbjct: 289 ARYSQSGYAEEALKLFSKMVQE-GFKPNISCFAC 321



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 134/332 (40%), Gaps = 93/332 (28%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++  A ++FD M + D VS  +++  ++   DL +A  +F  MPE  RN ++ SAMI  
Sbjct: 233 GEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPE--RNEISWSAMIAR 290

Query: 68  YVKAGRVDEARKVFDE-IYEG--------------------------------------N 88
           Y ++G  +EA K+F + + EG                                      +
Sbjct: 291 YSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKD 350

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG----------LI 138
           V+  +SLI  Y K  + D+GR +FD   +  KNVV W ++V G + NG          LI
Sbjct: 351 VFIGSSLIDLYCKCGKPDDGRLVFDL--ILEKNVVCWNSMVGGYSINGRLEETEELFELI 408

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFV------QMPNK-------------------- 172
            +   +SW T+  G   N   +   E F       Q PNK                    
Sbjct: 409 PEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGM 468

Query: 173 -------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
                        DI    A+   Y   G++  + ++F  MP++N  +W  MI   A +G
Sbjct: 469 NVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESG 528

Query: 220 PEGAAMKLLNLMFQ-SRFMPNETTCTSILTSC 250
               ++ L   M + S   PNE    S+L +C
Sbjct: 529 FAVESLILFEEMERTSEVAPNELMLLSVLFAC 560


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 250/511 (48%), Gaps = 34/511 (6%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN 57
           S F   G  +E  + + +M      PD  +    I   L   ++ K   L       + +
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFG-LELD 170

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   SA+++ Y+K G ++ A+  F+E+   +V  W ++++GY +  Q +     F RM  
Sbjct: 171 VFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM-- 228

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVA 176
             ++VV     V G           V+S   +   L      ++   + ++M  +  +  
Sbjct: 229 NDESVVPSRFTVTG-----------VLSVFAVMGDLNNG---RIIHGFAMKMGYDSGVAV 274

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N++I  Y     +  A E+F +M ++++++WN+++  + + G     ++LL+ M  +  
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI 334

Query: 237 MPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGF 289
            P+  T T++L +C     ++     H   I  G  ++      +  K     ++   G 
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGS 394

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D   A L FER+  KDV SW  MI+ Y  HG+G +   +F+RM +   KPDE+TFVGV
Sbjct: 395 MRD---AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGV 451

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSHAG V +GR     M   Y   P  EHY+C+ D+L RAGQ+ EA  +   MP  E
Sbjct: 452 LSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI-E 510

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + VV  ALL ACRLH    +A+   +R+ EL+P   G+YVL +NV+ A G ++E  +VR
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVR 570

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
             M ++ V+K    S IE+K   H  ++  R
Sbjct: 571 HTMRQQNVRKTPGCSWIELKNGVHVFVSADR 601



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 141/321 (43%), Gaps = 45/321 (14%)

Query: 62  SAMIDGYVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +++I+ Y K  +++ A  +F D  +E NV+++ ++ISG+      +EG   + +M  + +
Sbjct: 76  TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKM--RNE 133

Query: 121 NVVSWTTVVLGCAHNGLIAKLEV--ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            V+        CA    +  LE+  I       GLE                  D+   +
Sbjct: 134 GVIP-DKFTFPCAIKACLDVLEIKKIHGLLFKFGLEL-----------------DVFIGS 175

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y+  G M  A   F  +P R+V  WNAM++ YA+ G     ++    M     +P
Sbjct: 176 ALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVP 235

Query: 239 NETTCTSILT--SCEGMLEN-MLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWG 288
           +  T T +L+  +  G L N  + H  A+++G++   +++        KC C        
Sbjct: 236 SRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC-------- 287

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  A   FE +  KD+ SW +++  +   G      RL  RML +G +PD +T   
Sbjct: 288 ----IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 349 VLSDCSHAGLVEKGRKTFNLM 369
           VL  CSH   +  GR+    M
Sbjct: 344 VLPACSHLAALMHGREIHGYM 364


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 245/492 (49%), Gaps = 45/492 (9%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNIVAESAMIDGYVKA 71
           A K+F  +  P+      +I   L N+ L KA   + R + +++ N      +      A
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 72  GRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
             V E R++   + +     +V+  ++ I  Y    ++++ R++F               
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF--------------- 190

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
                 ++G   + +V+ W TM  G  +  + + A+  F QMP K+I +WN MI      
Sbjct: 191 ------YSG---ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKG 241

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           GN+  A +LF+ M +R+  +W++M+D Y   G    A+++   M +    P     +S+L
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 248 TSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFE 301
            +C     + +    HA   R   + +  L       Y      D G+++        FE
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV--------FE 353

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            ++ +++ +W AMI   + HG       LF+++ +   KP+ IT VGVL+ C+HAG V+K
Sbjct: 354 EMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDK 413

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           G + F  M   YG  P  EHY C+ D+L R+G   EA  +++ M P + +  V GALLGA
Sbjct: 414 GLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSM-PMKPNAAVWGALLGA 472

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVA 480
           CR+HG+  +A+ +G+ L+EL+P +SG YVL +N++A  G +D+ +++RK M+ R +K V 
Sbjct: 473 CRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVP 532

Query: 481 SFSQIEVKGKDH 492
             S +++ G  H
Sbjct: 533 GVSIVDLNGTVH 544



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 56/245 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G + +A KLFDEMS+ D +S +SM+  ++      +A  +F+ M   +            
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 56  --------------------RN-----IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                               RN      V  +A++D Y K GR+D   +VF+E+ E  ++
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIF 361

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPL-KLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +W ++I G     + ++   LF ++   ++K N ++   V+  CAH G + K        
Sbjct: 362 TWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDK-------- 413

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWT 207
              GL    + +  RE++   P  ++  +  M+     +G  ++A +L N MP + N   
Sbjct: 414 ---GLR---IFQTMREFYGVDP--ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAV 465

Query: 208 WNAMI 212
           W A++
Sbjct: 466 WGALL 470



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 130/352 (36%), Gaps = 70/352 (19%)

Query: 172 KDIVAWNAMITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           +D     A++  Y +    N   A ++F+ +P  NV+ WN +I     N     A+    
Sbjct: 63  QDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYG 122

Query: 230 LM-FQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG------------------ 267
            M   +R  PN+ T  ++  +C   + + E    H   ++ G                  
Sbjct: 123 RMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASF 180

Query: 268 --FEQETSLTYKCTCHYVFWD-----------------------------WGFQL----- 291
              E    + Y      V W+                             W   +     
Sbjct: 181 GRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAK 240

Query: 292 --DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             ++  AR  F+ +  +D +SW++M+  Y + G   +   +F +M +  T+P       V
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CS+ G +++GR     + R    K  A   + L D+  + G++     V  +M   E
Sbjct: 301 LAACSNIGAIDQGRWVHAYLKRN-SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK--E 357

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY---VLSANVHAA 458
           R+     A++G   +HG    A  +  +L E +   +G     VL+A  HA 
Sbjct: 358 REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 192/338 (56%), Gaps = 16/338 (4%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F +M   D+V+W  MI  Y   G+   A ELF+ MP+RN+ TW+ MI  YARN   
Sbjct: 171 ARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCF 230

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE-QETSLTYKCTC 280
             A++    +     + NET    +++SC        AH  A+ +G +  E  +  K + 
Sbjct: 231 EKAVETFEALQAEGVVANETVMVGVISSC--------AHLGALAMGEKAHEYVMRNKLSL 282

Query: 281 HYVFWDWGFQL-----DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
           + +       +     +V  A + FE+L  KDV+ WTA+I   + HG+  +    F+ M 
Sbjct: 283 NLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMA 342

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           K G  P +ITF  VL+ CSHAG+VE+G + F  M R +G +PR EHY C+ D+L RAG++
Sbjct: 343 KKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKL 402

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           ++A + V KMP  + +  +  ALLGACR+H +V + + +G+ L+E+QP  SG YVL +N+
Sbjct: 403 RKAEKFVLKMPV-KPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNI 461

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +A   +W +   +R+ M ++ V+K   +S IE+ GK H
Sbjct: 462 YARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVH 499



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 26/226 (11%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +++   +++++  Y   G ++ AR VF  +   +V SWT +I+GY +       R LFDR
Sbjct: 149 EQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDR 208

Query: 115 MPLKLKNVVSWTTVVLGCAHN----------------GLIAKLEV-ISWTTMCTGLERNA 157
           MP   +N+V+W+T++ G A N                G++A   V +   + C  L   A
Sbjct: 209 MP--ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALA 266

Query: 158 MTKLAREYFVQMPNK---DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           M + A EY   M NK   +++   A++  Y   GN+ +A  +F  +P+++V  W A+I  
Sbjct: 267 MGEKAHEYV--MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAG 324

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
            A +G    A+   + M +  F+P + T T++LT+C   GM+E  L
Sbjct: 325 LAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGL 370



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 52/294 (17%)

Query: 173 DIVAWNAMITAYVDAGN--MAQASELFNLMPQRNVWTWNAMIDRYARN-GPEGAAMKLLN 229
           D+ A + +I   +D+    +  A  + + +   N++ +NA+I   + +  PE +    + 
Sbjct: 48  DVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIK 107

Query: 230 LMFQSRF--MPNETTCTSILTSCEGMLEN----MLAHALAIRLGFEQETSLTYKCTCHYV 283
            +   RF  +P+  T   ++ +C   LEN    M  H  AI+ GFEQ+  +       ++
Sbjct: 108 AL---RFGLLPDNITHPFLVKAC-AQLENAPMGMQTHGQAIKHGFEQDFYVQNSLV--HM 161

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK------- 336
           +   G   D+N+AR  F+R+   DVVSWT MI  Y   G       LF RM +       
Sbjct: 162 YASVG---DINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWS 218

Query: 337 ------------------------SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
                                    G   +E   VGV+S C+H G +  G K    + R 
Sbjct: 219 TMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRN 278

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                     + + D+  R G V++A+ V  ++P  E+D +   AL+    +HG
Sbjct: 279 -KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLP--EKDVLCWTALIAGLAMHG 329



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 55/231 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
           G  K A +LFD M + + V+ ++MI+ + RN+   KA   F A+                
Sbjct: 197 GDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVI 256

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     N++  +A++D Y + G V++A  VF+++ E +V 
Sbjct: 257 SSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVL 316

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAK-LEVIS-- 145
            WT+LI+G       ++    F  M  K  +   +++T V+  C+H G++ + LE+    
Sbjct: 317 CWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESM 376

Query: 146 ------------WTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITA 183
                       +  M   L R    + A ++ ++MP K +   W A++ A
Sbjct: 377 KRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGA 427


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 270/531 (50%), Gaps = 60/531 (11%)

Query: 8   GKVKEATKLFDEMS-----QPDPVS-------CASMITVFLRNHDLPKAEALFRAMPESQ 55
           GK K A ++F +M+     +PD ++       CAS+ T       L K    F    E  
Sbjct: 207 GKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT-----RSLGKQFHGFAVTSEMI 261

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +N+   + ++D Y K G +DEA  VF  +   +V SW ++++GY +  + ++  RLF++M
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 116 -PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA----------- 162
              K+K +VV+W+  + G A  GL  +   +    + +G++ N +T ++           
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 163 ------REYFVQMP--------NKDIVAWNAMITAYVDAGNMAQASELFN-LMP-QRNVW 206
                   Y ++ P          + +  N +I  Y     +  A  +F+ L P +R+V 
Sbjct: 382 MHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVV 441

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQS--RFMPNETTCTSILTSCEGMLENMLA---HA 261
           TW  MI  Y+++G    A++LL+ MF+   +  PN  T +  L +C  +    +    HA
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHA 501

Query: 262 LAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
            A+R   +Q     +   C   ++   G   D+  ARL F+ +  K+ V+WT+++  Y  
Sbjct: 502 YALR--NQQNAVPLFVSNCLIDMYAKCG---DIGDARLVFDNMMEKNEVTWTSLMTGYGM 556

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +   +F  M + G K D +T + VL  CSH+G++++G + FN M   +G  P  E
Sbjct: 557 HGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPE 616

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+CL D+L RAG++  A+R++ +M P E   VV  ALL  CR+HG V + +Y  +++ E
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEM-PMEPPPVVWVALLSCCRIHGKVELGEYAAKKITE 675

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE-VKG 489
           L  ++ G+Y L +N++A  G W +  ++R  M  + +KK    S +E +KG
Sbjct: 676 LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKG 726



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 171/417 (41%), Gaps = 66/417 (15%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A++  Y + G + +ARKVFDE+   +V SW S+I  Y K  +      +F +M 
Sbjct: 161 NVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT 220

Query: 117 ---------LKLKNVV----SWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMT 159
                    + L NV+    S  T  LG   +G     E+I    +   L     +  M 
Sbjct: 221 NEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMM 280

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRY 215
             A   F  MP KD+V+WNAM+  Y   G    A  LF  M +     +V TW+A I  Y
Sbjct: 281 DEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGY 340

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR------- 265
           A+ G    A+ +   M  S   PNE T  S+L+ C     ++     H  AI+       
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRK 400

Query: 266 -------LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMIL 316
                  +   Q   +  KC              V+ AR  F+ L  K  DVV+WT MI 
Sbjct: 401 NGHGDENMVINQLIDMYAKCK------------KVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 317 AYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
            YS HG   +   L + M +    T+P+  T    L  C+    +  G++       AY 
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQI-----HAYA 503

Query: 375 FKPRAEHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + +         +CL D+  + G + +A  V   M   E++ V   +L+    +HG
Sbjct: 504 LRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM--MEKNEVTWTSLMTGYGMHG 558



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 26/240 (10%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +I+ Y+  G ++ A  L    P  +  V+ WN++I  Y  NG     +    LM    + 
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 238 PNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           P+  T   +  +C G + ++     +HAL+   GF     +       Y          +
Sbjct: 125 PDNYTFPFVFKAC-GEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG-----SL 178

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSD 352
           + AR  F+ +   DVVSW ++I +Y+  G       +F++M    G +PD+IT V VL  
Sbjct: 179 SDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPP 238

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHY------SCLADILRRAGQVKEAMRVVSKMP 406
           C+  G       T +L  + +GF   +E        +CL D+  + G + EA  V S MP
Sbjct: 239 CASVG-------TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMP 291


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 149/505 (29%), Positives = 244/505 (48%), Gaps = 45/505 (8%)

Query: 8   GKVKEATKLFDEMS-QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           GK   A    D M  + D V C+S+I ++ +  DL  A  +   + +      + SA+I 
Sbjct: 186 GKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDE--FSLSALIS 243

Query: 67  GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV--- 123
           GY  AGR+ EAR VFD   +     W S+ISGY    +  E   LF  M   L+N V   
Sbjct: 244 GYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAM---LRNGVQGD 300

Query: 124 -SWTTVVLGCAHNGLIAKL---------------EVISWTTMCTGLERNAMTKLAREYFV 167
            S    +L  A   L+ +L               +++  +++     +      A + F 
Sbjct: 301 ASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFS 360

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           ++   D +  N MIT Y + G +  A  +FN MP + + +WN+++    +N     A+ +
Sbjct: 361 ELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNI 420

Query: 228 LNLMFQSRFMPNETTCTSILTSCEG-----MLENMLAHALAIRLGFEQ--ETSLT-YKCT 279
            + M +     +  +  S++++C       + E +   A+ I L  +Q   TSL  + C 
Sbjct: 421 FSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCK 480

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
           C       GF   V   R  F+ +   D VSW  M++ Y+ +G+G +   LF  M   G 
Sbjct: 481 C-------GF---VEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGV 530

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            P  ITF GVLS C H+GLVE+GR  F+ M  +Y   P  EH+SC+ D+  RAG  +EAM
Sbjct: 531 WPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAM 590

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++ +MP     ++ L  L G C  HG+  +     E++I+L+P ++GAY+  +N+ A+ 
Sbjct: 591 DLIEEMPFQADANMWLSVLRG-CIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASS 649

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFS 483
           G+W+  A VR+ M ++  +K+   S
Sbjct: 650 GDWEGSALVRELMRDKHFQKIPGCS 674



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 179/452 (39%), Gaps = 63/452 (13%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
            +++A+ LFDEM Q +  S  +++   L +     A  LF AMP   +   + + ++  +
Sbjct: 51  NLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMP--HKTHFSWNMVVSAF 108

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            K+G +  A  +F+ +   N   W S+I  Y +     +   LF  M L    +V     
Sbjct: 109 AKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAF 168

Query: 129 VLGCAHNGLIAKLEV---------ISWTTMCTGLERNAMTKLAREY-------------- 165
           VL  A       L +         +    M   L+R   + L   Y              
Sbjct: 169 VLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVS 228

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           FV+  + D  + +A+I+ Y +AG M +A  +F+         WN++I  Y  NG E  A+
Sbjct: 229 FVR--DVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAV 286

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLT------- 275
            L + M ++    + +   +IL++  G+L   L    H  A + G   +  +        
Sbjct: 287 NLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAY 346

Query: 276 YKC----------------------TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            KC                      T   V+ + G    +  A+L F  + +K ++SW +
Sbjct: 347 SKCQSPCEACKLFSELKEYDTILLNTMITVYSNCG---RIEDAKLIFNTMPSKTLISWNS 403

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +++  + +    +   +F++M K   K D  +F  V+S C+    +E G + F   +   
Sbjct: 404 ILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFG-KAITI 462

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           G +      + L D   + G V+   +V   M
Sbjct: 463 GLESDQIISTSLVDFYCKCGFVEIGRKVFDGM 494



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 146/368 (39%), Gaps = 78/368 (21%)

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154
           L+  Y + R + +   LFD MP    N  SW T+V    ++G                  
Sbjct: 42  LLQLYSRCRNLQDASHLFDEMPQT--NSFSWNTLVQAHLNSG------------------ 81

Query: 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
               T  A   F  MP+K   +WN +++A+  +G++  A  LFN MP +N   WN++I  
Sbjct: 82  ---HTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHS 138

Query: 215 YARNGPEGAAM---KLLNLMFQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRL 266
           Y+R+G  G A+   K +NL        +     + L +C   L     + + A      +
Sbjct: 139 YSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGM 198

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSAR--LAFER--------------------LE 304
           G E +  L     C  +   +G   D++SA   ++F R                     E
Sbjct: 199 GLELDRVL-----CSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMRE 253

Query: 305 AKDV---------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A+ V         V W ++I  Y ++G   +   LF+ ML++G + D      +LS  S 
Sbjct: 254 ARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASG 313

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             +VE  ++        Y  K    H     S L D   +     EA ++ S++   E D
Sbjct: 314 LLVVELVKQM-----HVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELK--EYD 366

Query: 412 HVVLGALL 419
            ++L  ++
Sbjct: 367 TILLNTMI 374



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 67/333 (20%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
           S +   G+++EA  +FD    P  V   S+I+ ++ N +  +A  LF AM  +       
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302

Query: 55  ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
                                           +IV  S+++D Y K     EA K+F E+
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------- 136
            E +     ++I+ Y    ++++ + +F+ MP   K ++SW ++++G   N         
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMP--SKTLISWNSILVGLTQNACPSEALNI 420

Query: 137 ------LIAKLEVISWTTMCTGLERNAMTKLAREYF-----VQMPNKDIVAWNAMITAYV 185
                 L  K++  S+ ++ +     +  +L  + F     + + +  I++  +++  Y 
Sbjct: 421 FSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIIS-TSLVDFYC 479

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G +    ++F+ M + +  +WN M+  YA NG    A+ L   M      P+  T T 
Sbjct: 480 KCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTG 539

Query: 246 ILTSCE--GMLE------NMLAHALAIRLGFEQ 270
           +L++C+  G++E      + + H+  I  G E 
Sbjct: 540 VLSACDHSGLVEEGRNLFHTMKHSYNINPGIEH 572



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 62/305 (20%)

Query: 135 NGLIAKLEVISWTTMCTGLERN-AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           +GL+  L+  SW+T+  G + + A  K        + N  +   N ++  Y    N+  A
Sbjct: 4   HGLVRTLQ--SWSTLREGRQLHVAFLKTG------ILNSSVAVANRLLQLYSRCRNLQDA 55

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
           S LF+ MPQ N ++WN ++  +  +G   +A+ L N       MP++T  +         
Sbjct: 56  SHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNA------MPHKTHFS--------- 100

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
             NM+  A A     +   SL                         F  + +K+ + W +
Sbjct: 101 -WNMVVSAFAKSGHLQLAHSL-------------------------FNAMPSKNHLVWNS 134

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITF------VGVLSDCSHAGLVEKGRKTF- 366
           +I +YS HGH  +   LF  M      P +I +         L  C+ +  +  G++   
Sbjct: 135 IIHSYSRHGHPGKALFLFKSM---NLDPSQIVYRDAFVLATALGACADSLALNCGKQVHA 191

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            +     G +      S L ++  + G +  A R+VS +   + D   L AL+      G
Sbjct: 192 RVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFV--RDVDEFSLSALISGYANAG 249

Query: 427 DVRMA 431
            +R A
Sbjct: 250 RMREA 254


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/495 (31%), Positives = 254/495 (51%), Gaps = 42/495 (8%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYE 86
           ++T++ +   +  A  LF  MP   RN ++ + MI G+ +    + A K+F+    E ++
Sbjct: 199 LLTLYPKAGRMGDAYNLFVEMP--VRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFK 256

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG---CAHNGLIAKLEV 143
            +  +WTS++S + +  + ++  + F  M +   N VS   + +    CA    ++  E 
Sbjct: 257 PDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMS-GNAVSGEALAVFFSVCAELEALSIAEK 315

Query: 144 ISWTTMCTGLE-----RNAM---------TKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
           +    +  G E     RNA+          K A   F Q+ NK I +WN++IT++VDAG 
Sbjct: 316 VHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGK 375

Query: 190 MAQASELFNLMPQRN--------VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           + +A  LF+ + + N        V TW ++I      G    +++    M  S+ + N  
Sbjct: 376 LDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSV 435

Query: 242 TCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T   IL+ C  +    L    H   IR    +   +       Y     G    ++   L
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYA--KCGL---LSEGSL 490

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            FE +  KD++SW ++I  Y  HG   +   +F RM+ SG  PD I  V VLS CSHAGL
Sbjct: 491 VFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGL 550

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           VEKGR+ F  MS+ +G +P+ EHY+C+ D+L R G +KEA  +V  M P E    VLGAL
Sbjct: 551 VEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNM-PMEPKVCVLGAL 609

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KKMERRVK 477
           L +CR+H +V +A+ I  +L  L+P  +G+Y+L +N+++A G W+E A VR    ++ +K
Sbjct: 610 LNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLK 669

Query: 478 KVASFSQIEVKGKDH 492
           KV+  S IEVK K +
Sbjct: 670 KVSGSSWIEVKKKKY 684



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 67/290 (23%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  GKVK+A  LF ++      S  S+IT F                            
Sbjct: 339 YGKQGKVKDAEHLFRQIRNKGIESWNSLITSF---------------------------- 370

Query: 64  MIDGYVKAGRVDEARKVFDEIYE--------GNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                V AG++DEA  +F E+ E         NV +WTS+I G     + D+    F +M
Sbjct: 371 -----VDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNK 172
                L N V+   ++  C      A+L  ++      G + R +M+            +
Sbjct: 426 QFSKVLANSVTICCILSIC------AELPALNLGREIHGHVIRTSMS------------E 467

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +I+  NA++  Y   G +++ S +F  +  +++ +WN++I  Y  +G    A+ + + M 
Sbjct: 468 NILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMI 527

Query: 233 QSRFMPNETTCTSILTSCE--GMLEN--MLAHALAIRLGFEQETSLTYKC 278
            S F P+     ++L++C   G++E    + ++++ R G E +    Y C
Sbjct: 528 SSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQE-HYAC 576



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 137/353 (38%), Gaps = 69/353 (19%)

Query: 64  MIDGYVKAGRVDEARKVFDEI---YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +I  Y + G + +AR VF+ +      ++  W S++         +    L+  M  +  
Sbjct: 95  LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQR-- 152

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNA 179
                     G   +G I  L +      C  L R  + +      +Q+  K ++   N 
Sbjct: 153 ----------GLTGDGYILPLIL----RACRYLGRFGLCRAFHTQVIQIGLKENLHVVNE 198

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++T Y  AG M  A  LF  MP RN  +WN MI  +++     +A+K+   M +  F P+
Sbjct: 199 LLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPD 258

Query: 240 ETTCTSILTSCE---GMLENML------------------------------------AH 260
           E T TS+L SC    G  E++L                                     H
Sbjct: 259 EVTWTSVL-SCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVH 317

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              I+ GFE+     Y  + + +   +G Q  V  A   F ++  K + SW ++I ++ +
Sbjct: 318 GYVIKGGFEE-----YLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVD 372

Query: 321 HGHGFQVFRLFARMLK----SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            G   +   LF+ + +       K + +T+  V+  C+  G  +   + F  M
Sbjct: 373 AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 246/491 (50%), Gaps = 47/491 (9%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75
           +F      D      ++ ++ +  +L  A ALF  MP  +RNI++ + MI  Y+  G ++
Sbjct: 95  IFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP--RRNIMSCNIMIKAYLGMGNLE 152

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCA 133
            A+ +FDE+ + NV +W ++++G  K    +E   LF RM     + +  S  +V+ GCA
Sbjct: 153 SAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCA 212

Query: 134 HNG-LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           H G L+A  +V ++   C G E N                 +V   ++   Y+ AG+M  
Sbjct: 213 HLGALLAGQQVHAYVMKC-GFECN-----------------LVVGCSLAHMYMKAGSMHD 254

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
              + N MP  ++  WN ++   A+ G     +    +M  + F P++ T  S+++SC  
Sbjct: 255 GERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSE 314

Query: 253 M---LENMLAHALAIRLG-------FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           +    +    HA A++ G            S+  +C C            +  +   F  
Sbjct: 315 LAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGC------------LQDSIKTFLE 362

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
            + +DVV W++MI AY  HG G +  +LF  M +     +EITF+ +L  CSH GL +KG
Sbjct: 363 CKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKG 422

Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
              F++M + YG K R +HY+CL D+L R+G ++EA  ++  MP  + D ++   LL AC
Sbjct: 423 LGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPV-KADAIIWKTLLSAC 481

Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVAS 481
           ++H +  +A  + + ++ + P  S +YVL AN++++   W   ++VR+ M ++ VKK   
Sbjct: 482 KIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPG 541

Query: 482 FSQIEVKGKDH 492
            S +EVK + H
Sbjct: 542 ISWVEVKNQVH 552


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 233/480 (48%), Gaps = 45/480 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI----Y 85
           ++I V+L N  +  A  +F  MP    +IV+ + MI GY K G   EA ++F E+     
Sbjct: 103 TLIKVYLENGLVRLAHQVFEKMPSP--DIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGL 160

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E + ++   L+    +   V  G+ +   M  +   + S   ++LG A   +  K     
Sbjct: 161 EPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISS--NLILGNALLDMYVK----- 213

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
               C  +E      LA   F  +  KDIV+WN ++      G + QA   F  MP R++
Sbjct: 214 ----CQKVE------LALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDI 263

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHAL 262
            +WN+++  YA  G   +  +L+  M   + +P+  T  S++   T    + +   AH  
Sbjct: 264 VSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGW 323

Query: 263 AIRL-----GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
            IR+      F     +   C C            +  A   F+ +  KDV  WT MI  
Sbjct: 324 VIRMQIKLDAFLGSALIDMYCKCG----------SIERASRVFKEINKKDVTVWTTMITG 373

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
            + HG+G +   LF+ M +    PD++TFV VLS CSH+GLV++G K F+ M+  YG +P
Sbjct: 374 LAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEP 431

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
             EHY CL D+L R+G++ EA  ++ +MP  +    + GA+L AC+  GDV +A+     
Sbjct: 432 GVEHYGCLVDLLARSGRLSEAKDIIDQMP-MKPSRSIWGAMLNACQAQGDVELAEIASRE 490

Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           L+ L P   G Y L +N++AA G W    ++R+ ME R VKK A  S + V G  H  ++
Sbjct: 491 LLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFIS 550



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 18/249 (7%)

Query: 189 NMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           N+  A  LFN   P  N++ +N +I  ++ +  +  +  L N++  S   P++ T   +L
Sbjct: 15  NLDLAITLFNHFTPNPNLFIYNTLISAFS-SLKKIESFYLYNVLLSSGECPDKQTLLYLL 73

Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            +   + +    H  AI  G     S  Y + T   V+ + G    V  A   FE++ + 
Sbjct: 74  QAVNFISQVKQIHCQAIVTGL---FSFGYLQNTLIKVYLENGL---VRLAHQVFEKMPSP 127

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           D+VS+  MI+ Y+  G G +  RLF  M+  G +PDE T +G+L  C   G V+ G+   
Sbjct: 128 DIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH 187

Query: 367 NLMSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422
             M R    KP         + L D+  +  +V+ A+R    +   E+D V    ++  C
Sbjct: 188 GWMERR---KPTISSNLILGNALLDMYVKCQKVELALRTFGAL--KEKDIVSWNMIVAGC 242

Query: 423 RLHGDVRMA 431
              G++  A
Sbjct: 243 AKVGELEQA 251



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 36/281 (12%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           N +I  Y++ G +  A ++F  MP  ++ ++N MI  YA+ G    AM+L + M      
Sbjct: 102 NTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLE 161

Query: 238 PNETTCTSILTSCEGMLEN----------------------MLAHALAIRLGFEQETSL- 274
           P+E T   +L SC G L N                      +L +AL       Q+  L 
Sbjct: 162 PDEFTILGLLVSC-GQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELA 220

Query: 275 --TYKCTCHYVFWDWGFQL-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
             T+          W   +       ++  ARL F ++  +D+VSW +++  Y+  G   
Sbjct: 221 LRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFA 280

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
            V  L   M+     PD +T + ++S  + +G +++GR     + R    K  A   S L
Sbjct: 281 SVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQ-IKLDAFLGSAL 339

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            D+  + G ++ A RV  ++  +++D  V   ++     HG
Sbjct: 340 IDMYCKCGSIERASRVFKEI--NKKDVTVWTTMITGLAFHG 378


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 269/538 (50%), Gaps = 53/538 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT-VFLRNHDLPKAEALFRAMPESQRNIVAES--AM 64
           G V+EA  +F  M   D VS  +++  + L  HDL +A  LF     S   +   +   +
Sbjct: 254 GLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDL-EALQLFHDSRSSITMLTQSTYATV 312

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSW----TSLISGYFKARQVDEGRRLFDRMPLKLK 120
           I       ++  AR++   + +   +S+    T+L+  Y KA Q+     +F  M    +
Sbjct: 313 IKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGS-Q 371

Query: 121 NVVSWTTVVLGCAHNG---LIAKL-----------EVISWTTMCTGLERNAMTKLAREYF 166
           NVVSWT ++ GC  NG   L A L              +++T+ T     ++  L  +  
Sbjct: 372 NVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA----SVASLPPQIH 427

Query: 167 VQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            Q+   +     +   A++ +Y    N  +A  +F ++ Q++V +W+AM+  YA+ G   
Sbjct: 428 AQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSD 487

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
            A  +   M      PNE T +S++ +C        +    + LG  Q  +++ K  CH 
Sbjct: 488 GATNIFIKMTMHGLKPNEFTISSVIDACA-------SPTAGVDLG-RQFHAISIKHRCHD 539

Query: 283 VFWD-------WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                      +  +  + SA+  FER   +D+VSW +M+  Y+ HG+  +   +F +M 
Sbjct: 540 ALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQME 599

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
             G + D +TF+ V+  C+HAGLVE+G++ F+ M+R YG  P  EHY+C+ D+  RAG++
Sbjct: 600 AEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKL 659

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            EAM ++  M       +V   LLGAC++H +V +     E+L+ L+P  S  YVL +N+
Sbjct: 660 DEAMSLIEGM-SFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNI 718

Query: 456 HAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           ++A G+W E  +VRK M+ ++VKK A  S I++K K H+ +A     P+ E  Y  L+
Sbjct: 719 YSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLR 776



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 182/454 (40%), Gaps = 99/454 (21%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           ++++D Y+K   V + RKVF+ + + NV +WTSL++GY +   + +   LF RM  +   
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 120 KNVVSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGL----ERNAMTKLAREY 165
            N V++ +V+   A  G++           K    S   +C  L     +  + + AR  
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFN-------LMPQRNVWT----------- 207
           F  M  +D+V+WN ++   V  G+  +A +LF+       ++ Q    T           
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQL 322

Query: 208 ---------------------WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
                                  A++D Y++ G  G A+ +  LM  S+   N  + T++
Sbjct: 323 GLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQ---NVVSWTAM 379

Query: 247 LTSCEGMLENMLAHALAIRL--------GFEQETSLT------------------YKCTC 280
           +  C    +  LA AL  R+         F   T LT                  Y+CT 
Sbjct: 380 INGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTS 439

Query: 281 ---HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
                +   +    +   A   F+ ++ KDVVSW+AM+  Y+  G       +F +M   
Sbjct: 440 IVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 338 GTKPDEITFVGVLSDC-SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRA 392
           G KP+E T   V+  C S    V+ GR+       A   K R     C++  L     R 
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLGRQF-----HAISIKHRCHDALCVSSALVSMYARK 554

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           G ++ A  +  +    +RD V   ++L     HG
Sbjct: 555 GSIESAQCIFERQT--DRDLVSWNSMLSGYAQHG 586



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 27/286 (9%)

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----- 141
           G+V   TSL+  Y K   V +GR++F+ MP   +NVV+WT+++ G   +G ++ +     
Sbjct: 137 GDVGVGTSLVDMYMKWHSVVDGRKVFEAMP--KRNVVTWTSLLTGYIQDGALSDVMELFF 194

Query: 142 ---------EVISWTTMCTGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYVDAG 188
                      +++ ++ + +    M  L R    Q         +   N+++  Y   G
Sbjct: 195 RMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCG 254

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            + +A  +F  M  R++ +WN ++     NG +  A++L +    S  M  ++T  +++ 
Sbjct: 255 LVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIK 314

Query: 249 SCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            C  + +  LA   H+  ++ GF    ++    T     +    QL  N+  +      +
Sbjct: 315 LCANIKQLGLARQLHSSVLKRGFHSYGNVM---TALMDAYSKAGQLG-NALDIFLLMSGS 370

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++VVSWTAMI     +G       LF+RM + G  P++ T+  +L+
Sbjct: 371 QNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 12/272 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+    +++  Y+   ++    ++F  MP+RNV TW +++  Y ++G     M+L   M 
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 233 QSRFMPNETTCTSILT--SCEGMLE-NMLAHALAIRLGFEQETSLTYKC-TCHYVFWDWG 288
                PN  T  S+L+  + +GM++     HA +++ G     S  + C +   ++   G
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGC---CSTVFVCNSLMNMYAKCG 254

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V  AR+ F  +E +D+VSW  ++     +GH  +  +LF     S T   + T+  
Sbjct: 255 L---VEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYAT 311

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           V+  C++   +   R+  + + +  GF       + L D   +AGQ+  A+ +   M   
Sbjct: 312 VIKLCANIKQLGLARQLHSSVLK-RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSG- 369

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
            ++ V   A++  C  +GDV +A  +  R+ E
Sbjct: 370 SQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 13/238 (5%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           A + F+ +P RN    +A+ D   R     A    L++               +L  C  
Sbjct: 57  ARQAFDEIPHRNTLD-HALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGS 115

Query: 253 MLENMLA---HALAIRLGFEQ-ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
           + + +L    H L IR G ++ +  +       Y+ W       V   R  FE +  ++V
Sbjct: 116 VPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWH-----SVVDGRKVFEAMPKRNV 170

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           V+WT+++  Y   G    V  LF RM   G  P+ +TF  VLS  +  G+V+ GR+  + 
Sbjct: 171 VTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRV-HA 229

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            S  +G        + L ++  + G V+EA  V   M    RD V    L+    L+G
Sbjct: 230 QSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGM--ETRDMVSWNTLMAGLVLNG 285



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 28/212 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIV 59
           S +   G ++ A  +F+  +  D VS  SM++ + ++    KA  +FR M     + + V
Sbjct: 549 SMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGV 608

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDR 114
              ++I G   AG V+E ++ FD +         +  +  ++  Y +A ++DE   L + 
Sbjct: 609 TFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEG 668

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNA-MTKLAREYFVQMPNKD 173
           M      +V W T++  C                    + +N  + KLA E  + +   D
Sbjct: 669 MSFPAGPMV-WRTLLGACK-------------------VHKNVELGKLAAEKLLSLEPFD 708

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
              +  +   Y  AG   +  E+  LM  + V
Sbjct: 709 SATYVLLSNIYSAAGKWKEKDEVRKLMDTKKV 740


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 163/586 (27%), Positives = 263/586 (44%), Gaps = 108/586 (18%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---NIVA 60
            +G  G V+ A  +FD+M  PD  +   MI  +  N         +  M  S R   NI+ 
Sbjct: 1162 YGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRECDNIIF 1221

Query: 61   E---------------------------------SAMIDGYVKAGRVDEARKVFDEIYEG 87
                                              + +ID Y K G+V+ +  VF+EI + 
Sbjct: 1222 SIILKACSELREIVEGRKVHCQIVKVGGPDSFVMTGLIDMYGKCGQVECSSAVFEEIMDK 1281

Query: 88   NVYSWTSLISGYFKARQVDEGRRLFDRM--------PLKLKNVVSWTTVVLGCAHNGL-- 137
            NV SWTS+I+GY +    +EG  LF+RM        P  L ++++  T  L   H G   
Sbjct: 1282 NVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTK-LRALHQGKWV 1340

Query: 138  -------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
                   IA+L     TT      +   T+ AR  + ++P  D+V+W  MI  Y  A   
Sbjct: 1341 HGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQP 1400

Query: 191  AQASELF------NLMP---------------------------------------QRNV 205
                 LF      +L+P                                       +++V
Sbjct: 1401 NDGLRLFADEIRSDLLPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDV 1460

Query: 206  WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HAL 262
             TWN+MI  YA+NG    A++L N M      P+  T  S L++   +    +    HA 
Sbjct: 1461 ITWNSMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAY 1520

Query: 263  AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            +++ G    +S  Y  T    F+      D  SAR+ F+ +  K++++W+AMI  Y   G
Sbjct: 1521 SVKGGLF--SSNLYIGTALLNFY--AKCGDARSARMVFDSMGVKNIITWSAMIGGYGVQG 1576

Query: 323  HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
             G     +F+ MLK   KP+E+ F  VLS CS++G+VE+G + F  M + Y F P  +HY
Sbjct: 1577 DGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEGGRYFKSMIQDYNFVPSMKHY 1636

Query: 383  SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
            +C+ D+L R+G++ EA+  + KMP  +RD  + GA L  C L+    + + +   +++L 
Sbjct: 1637 ACMVDLLARSGKLDEALDFIKKMPV-QRDVSLYGAFLHGCGLYSRFDLGEVVVREMLQLH 1695

Query: 443  PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
             + +  YVL +N++A+ G+W +  +VR  M +R + KV  +S +E 
Sbjct: 1696 RNEACYYVLVSNLYASDGKWGQVNEVRDLMLQRGLNKVPGYSLVET 1741



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 150/394 (38%), Gaps = 49/394 (12%)

Query: 57   NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            N++ ++ ++  Y   G V  AR VFD++   + Y+W  +I  YF      +    ++RM 
Sbjct: 1151 NLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMR 1210

Query: 117  LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +  +   +    ++  A                C+ L      +      V++   D   
Sbjct: 1211 MSFRECDNIIFSIILKA----------------CSELREIVEGRKVHCQIVKVGGPDSFV 1254

Query: 177  WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
               +I  Y   G +  +S +F  +  +NV +W +MI  Y +N      + L N M  +  
Sbjct: 1255 MTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALV 1314

Query: 237  MPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
              N  T  SI+   T    + +    H  AI+   E  + L       YV    G   D 
Sbjct: 1315 ESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYV--KCGQTRD- 1371

Query: 294  NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE---------I 344
              AR+ ++ L   D+VSWT MI+ Y+         RLFA  ++S   P+          +
Sbjct: 1372 --ARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALLQVFFQRV 1429

Query: 345  TFVGVLSD-------CSHA-----GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
             F+  L D        S A     G++EK   T+N M   Y     A     L + +R  
Sbjct: 1430 RFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSY 1489

Query: 393  GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
                +A+ +VS +         LGA+     LH 
Sbjct: 1490 SLAPDAITLVSTLSA----SATLGAIQVGSSLHA 1519


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 168/531 (31%), Positives = 251/531 (47%), Gaps = 56/531 (10%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRNIVA 60
           TG  +EA  LF EM     +P+ V+  S++     L    L K+   F    +   ++  
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLST 467

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++  Y K G    A   F+ +   ++ +W SLI+GY +         +F ++ L   
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAI 527

Query: 121 NVVSWTTV--VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           N  + T V  V  CA       L  +   T   GL    + KL  E        D    N
Sbjct: 528 NPDAGTMVGVVPACA------LLNDLDQGTCIHGL----IVKLGFE-------SDCHVKN 570

Query: 179 AMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           A+I  Y   G++  A  LFN     ++  TWN +I  Y +NG    A+   + M    F 
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 238 PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN  T  S+L +        E M  HA  I++GF   T +       Y       QLD  
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG---QLDY- 686

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S +L F  ++ KD VSW AM+  Y+ HGHG +   LF+ M +S  + D ++FV VLS C 
Sbjct: 687 SEKL-FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 745

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLVE+GRK F+ MS  Y  KP  EHY+C+ D+L RAG   E +  +  MP  E D  V
Sbjct: 746 HAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPV-EPDAGV 804

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            GALLG+CR+H +V++ +   + L++L+P +   +V+ ++++A  G W +  + R KM +
Sbjct: 805 WGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMND 864

Query: 474 RRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
             +KK    S +E+K K H                    TLL  M ++GYV
Sbjct: 865 LGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYV 915



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 198/465 (42%), Gaps = 36/465 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAMI 65
           G +K A ++FD+M + D V+  +MI    ++ D  +A   FR+M     + + V+   + 
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTS--LISGYFKARQVDEGRRLFDRMPLKLKNVV 123
            G  K   ++  R +   ++  +  S  S  LI  Y K   VD  RR+FD+M    ++ V
Sbjct: 238 PGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMV--DQDDV 295

Query: 124 SWTTVVLGCAHNGL-----------------IAKLEVIS-WTTMCTGLERNAMTKLAREY 165
           SW T++ G AHNG                  I K+  +S +      ++     ++    
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
             Q  + DI+    ++  Y   G   +A +LF  +  R++  W+A+I    + G    A+
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            L   M   +  PN  T  SIL +C  +    L    H   ++   + + S        Y
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMY 475

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                GF     +A   F R+ ++D+V+W ++I  Y+  G  +    +F ++  S   PD
Sbjct: 476 A--KCGF---FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPD 530

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             T VGV+  C+    +++G     L+ +  GF+      + L D+  + G +  A  + 
Sbjct: 531 AGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVR--MADYIGERLIELQPSS 445
           +K     +D V    ++ A   +G  +  ++ +   RL    P+S
Sbjct: 590 NK-TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS 633



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/378 (19%), Positives = 151/378 (39%), Gaps = 32/378 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +R++   + ++D Y K G +  AR+VFD++ + +V +W ++I+G  ++    E    F  
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRS 220

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M L                   +  +   +S   +  G+ + +  +L R     +  +D 
Sbjct: 221 MQL-------------------VGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 175 --VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                N +I  Y   G++  A  +F+ M  ++  +W  M+  YA NG     ++L + M 
Sbjct: 262 SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 321

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                 N+ +  S   +    ++       H  A++   + +  +       Y       
Sbjct: 322 LGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG--- 378

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +   A+  F  L+ +D+V+W+A+I A    G+  +   LF  M     KP+ +T + +
Sbjct: 379 --ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+   L++ G+       +A          + L  +  + G    A+   ++M    
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS--S 493

Query: 410 RDHVVLGALLGACRLHGD 427
           RD V   +L+      GD
Sbjct: 494 RDIVTWNSLINGYAQIGD 511



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 127/322 (39%), Gaps = 61/322 (18%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I+ Y    + D AR VFD     +   W S+I  Y +++Q +E   ++  M  K     
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCT--GLERNAMT--------------KLAREYFV 167
            +T   +  A  G +   E + +       GLER+                 K ARE F 
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +MP +D+VAWNAMI     + +  +A + F  M                  G E +++ L
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV---------------GVEPSSVSL 233

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS-----LTYKCTCHY 282
           LNL      + N   C SI             H    R  F    S     L  KC    
Sbjct: 234 LNLFPGICKLSNIELCRSI-------------HGYVFRRDFSSAVSNGLIDLYSKCG--- 277

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    DV+ AR  F+++  +D VSW  M+  Y+++G   +V  LF +M     + +
Sbjct: 278 ---------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 343 EITFVGVLSDCSHAGLVEKGRK 364
           +++ V      +    +EKG++
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKE 350



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 11/202 (5%)

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +L+SC+ +   +  HA  I  GF+   S+T+    + +F         + AR  F+    
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH------KCDLARSVFDSTPN 91

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
              + W +MI AY+      +   ++  M++ G +PD+ TF  VL  C+ A  +++G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRL 424
              + R  G +      + L D+  + G +K A  V  KMP  +RD V   A++ G  + 
Sbjct: 152 HGEIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP--KRDVVAWNAMIAGLSQS 208

Query: 425 HGDVRMADYI-GERLIELQPSS 445
                  D+    +L+ ++PSS
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSS 230


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 158/548 (28%), Positives = 253/548 (46%), Gaps = 74/548 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           GK+ +A KLFDEM   D +S   +   FLRN +      L + M                
Sbjct: 104 GKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDQATLTIVLS 163

Query: 52  ----PE----------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
               PE                  + I   + +I  Y K G     R VF E+   NV +
Sbjct: 164 VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVIT 223

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           WT++ISG  +    ++G RLF  M   L   N V++ + +  C+ + +I + + I     
Sbjct: 224 WTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLW 283

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             G+E                  ++   +A++  Y   G++  A ++F    + +  +  
Sbjct: 284 KFGIE-----------------SELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMT 326

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA-----HALAI 264
            ++   A+NG E  A++    M Q+    +    ++IL      ++N L      H+L I
Sbjct: 327 VILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGV--SFVDNSLGLGKQLHSLVI 384

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           +  F   T +       Y         D+  ++  F R+  ++ VSW +MI A++ HGHG
Sbjct: 385 KRKFCGNTFVNNGLINMYSKCG-----DLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHG 439

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
               +L+  M     KP ++TF+ +L  CSH GL++KGR+  N M   +G KPR EHY+C
Sbjct: 440 LAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTC 499

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L RAG +KEA   +  +P  + D  +  ALLGAC  HGD  + +Y  E+L E  P 
Sbjct: 500 IIDMLGRAGLMKEAKSFIDSLPL-KPDCKIWQALLGACSFHGDTEVGEYAAEQLFETAPD 558

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PM 498
           SS A++L AN++++RG+W E A+  K+M E  V K    S IE++ K H+ +      P 
Sbjct: 559 SSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEKKTHSFVVEDKMHPQ 618

Query: 499 REMGYVVL 506
            E  Y VL
Sbjct: 619 AEAIYDVL 626



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 174/403 (43%), Gaps = 30/403 (7%)

Query: 55  QRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
            RN +V  ++++  YVK G++ +A K+FDE+   +V S   +  G+ + R+ + G  L  
Sbjct: 86  HRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLK 145

Query: 114 RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREY-FVQMPNK 172
           RM              LG   +G   +  +    ++C   E   +TK+      +   +K
Sbjct: 146 RM--------------LG---SGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDK 188

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +I   N +IT+Y   G       +F+ M  RNV TW A+I     N      ++L  LM 
Sbjct: 189 EISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMR 248

Query: 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +    PN  T  S L +C G   ++E    HAL  + G E E  L  +     ++   G 
Sbjct: 249 RGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESE--LCIESALMDMYSKCG- 305

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   FE  +  D VS T +++  + +G   +  + F RML++G + D      +
Sbjct: 306 --SIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAI 363

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L        +  G++  +L+ +   F       + L ++  + G + ++  V  +MP  +
Sbjct: 364 LGVSFVDNSLGLGKQLHSLVIKR-KFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMP--K 420

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           R++V   +++ A   HG    A  + E +  L+   +    LS
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLS 463


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 252/518 (48%), Gaps = 43/518 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRNIVAE 61
           G+V  A ++F ++++ D +S  SM++ +++N    +A   F  M      P+    +   
Sbjct: 315 GRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLS 374

Query: 62  SAMIDGYVKAGRVDEARK----VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           SA+  G++   R++  R+       +    ++    +L+  Y K   ++   ++F+ M  
Sbjct: 375 SAL--GHLS--RLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESM-- 428

Query: 118 KLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMTK 160
            +++ +SWTT++   A +                  ++  + + S    C GL+  ++ K
Sbjct: 429 GIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLK 488

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
               Y ++    D++  N +I  Y + G    +  LF  + ++++ +W +MI+    NG 
Sbjct: 489 QVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGR 548

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYK 277
              A+ L   M ++   P+     SIL +  G+    +    H   IR  F  E  +   
Sbjct: 549 LNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSS 608

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y          +N A   FER + KDVV WTAMI A   HGHG Q   LF RML++
Sbjct: 609 LVDMYSGCG-----SMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQT 663

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G  PD ++F+ +L  CSH+ LVE+G+   ++M   Y  KP  EHY+C+ DIL R+GQ +E
Sbjct: 664 GLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEE 723

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A   +  MP   +   V  ALLGACR+H +  +A     +L+EL+P + G Y+L +NV A
Sbjct: 724 AYEFIKTMPMDPKS-AVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFA 782

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
             G+W+   + R +M ER ++K  + S IE+    HT 
Sbjct: 783 EMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTF 820



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 47/370 (12%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNV 122
           Y + GRVD+AR++F+ +    V+SW +L+  Y  +    E  R++  M     P    + 
Sbjct: 105 YGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDG 164

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            +  +V+  C   G             C G       K+  +       K  +  NA+I 
Sbjct: 165 CTLASVLKACGAEG----------DGRCGGEVHGLAVKVGLD-------KSTLVANALIG 207

Query: 183 AYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
            Y   G +  A  +F  + Q  R+V +WN+++    +NG    A+ L   M  + F  N 
Sbjct: 208 MYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNS 267

Query: 241 TTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFW-DWGFQLDVNSA 296
            T  ++L  C   G+L      HA  ++ G E    L  +C    V +  +G    V+SA
Sbjct: 268 YTSVAVLQVCAELGLLSLGRELHAALLKCGSE----LNIQCNALLVMYAKYG---RVDSA 320

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F ++  KD +SW +M+  Y  +    +    F  ML+ G +PD    V + S   H 
Sbjct: 321 LRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHL 380

Query: 357 GLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
             +  GR+       AY  K R     +  + L D+  + G ++ + +V   M    RDH
Sbjct: 381 SRLNNGREF-----HAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGI--RDH 433

Query: 413 VVLGALLGAC 422
           +    +L AC
Sbjct: 434 ISWTTIL-AC 442



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/483 (20%), Positives = 187/483 (38%), Gaps = 60/483 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G+V +A +LF+ M      S  +++  +L +    +A  ++ AM    R   A  +
Sbjct: 105 YGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAM----RASAAPGS 160

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSW-------------TSLISGYFKARQVDEGRR 110
             DG   A  +       D    G V+                +LI  Y K   +D   R
Sbjct: 161 APDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALR 220

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA-------- 162
           +F+ +    ++V SW +VV GC  NG   +   +       G   N+ T +A        
Sbjct: 221 VFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAEL 280

Query: 163 ------REY---FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                 RE     ++  ++  +  NA++  Y   G +  A  +F  + +++  +WN+M+ 
Sbjct: 281 GLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLS 340

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA----HALAIRLGFE 269
            Y +N     A+     M Q  F P+   C   L+S  G L  +      HA AI+    
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDH-ACVVSLSSALGHLSRLNNGREFHAYAIKQRL- 398

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
             T L    T   ++   G    +  +   FE +  +D +SWT ++  ++      +   
Sbjct: 399 -HTDLQVGNTLMDMYIKCG---SIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALE 454

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC----- 384
           +   + K G   D +    +L  C        G K+ +L+ + + +  R           
Sbjct: 455 MILELQKEGIMVDSMMIGSILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENR 507

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--IELQ 442
           L DI    G+   ++ +  ++   ++D V   +++  C  +G +  A ++   +    +Q
Sbjct: 508 LIDIYGECGEFDHSLNLFQRV--EKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQ 565

Query: 443 PSS 445
           P S
Sbjct: 566 PDS 568



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 28/295 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--- 236
           ++  Y   G +  A  LFN MP R V++WNA++  Y  +G  G AM++   M  S     
Sbjct: 101 LVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGS 160

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  T  S+L +C    +       H LA+++G ++ T +       Y     G    +
Sbjct: 161 APDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYA--KCGL---L 215

Query: 294 NSARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           +SA   FE L+  A+DV SW +++     +G   +   LF  M  +G   +  T V VL 
Sbjct: 216 DSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQ 275

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAE-HYSCLADILRRA--GQVKEAMRVVSKMPPH 408
            C+  GL+  GR+       A   K  +E +  C A ++  A  G+V  A+RV  ++   
Sbjct: 276 VCAELGLLSLGREL-----HAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIA-- 328

Query: 409 ERDHVVLGALLGACRLHGD--VRMADYIGERLIE-LQPSSSGAYVLSANV-HAAR 459
           E+D++   ++L +C +         D+ GE L    QP  +    LS+ + H +R
Sbjct: 329 EKDYISWNSML-SCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 245/487 (50%), Gaps = 29/487 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y   G +  AR+V D +   N 
Sbjct: 287 SLITLYLRMGDAAAAHRVFDDM--EVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNE 344

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI+ + +     E  +L+ +M       N+  +++V+  CA    +     I   
Sbjct: 345 VSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHAN 404

Query: 148 TMCTGLERNAMTK--------------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
            +  G   N                   A+  F  +P K+ V WN++I+ Y   G M +A
Sbjct: 405 ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEA 464

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             LFN MP RN  +WN MI  YA N   G A+     M  S  +P E T +S+L +C  +
Sbjct: 465 EGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANL 524

Query: 254 LE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                  + HA  ++LG E    +    +  Y         D++S+R  F ++  K+ ++
Sbjct: 525 CSLEMGRMVHAEIVKLGIEDNIFMGTALSDMY-----AKSGDLDSSRRVFYQMPEKNNIT 579

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTAM+   + +G   +   LF  M+++G  P+E TF+ +L  CSH GLVE+    F  M 
Sbjct: 580 WTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM- 638

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           +A+G  P+++HY+C+ D+L RAG + EA  ++ K+   E D     +LL AC  + +  +
Sbjct: 639 QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKV-SSELDTSSWSSLLSACSTYRNKEI 697

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
            +   ++L EL+  ++  YVL +N++A+ G+W + A+ R  M+   +KK A  S ++++G
Sbjct: 698 GERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRG 757

Query: 490 KDHTLLA 496
           + H   +
Sbjct: 758 QYHAFFS 764



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 203/456 (44%), Gaps = 51/456 (11%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M++  ++  D+  A  LF  MPE  +++V+ + M+D  +K G V +A ++++     +V 
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPE--KSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA 212

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNG-LIAKLEVISWT 147
            +T++ISG+ +     +   +F +M       NVV+   V+  C   G     + V+   
Sbjct: 213 FFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLA 272

Query: 148 TMCTGLER-----NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             C   E+     N++  L         A   F  M  +D+V+W A++  Y D G++  A
Sbjct: 273 VKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGA 332

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
             + + MP RN  +W  +I R+ + G    A+KL + M      PN +  +S+L++C  +
Sbjct: 333 RRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATL 392

Query: 254 LE---NMLAHALAIRLG-----FEQETSLTYKCTC----------------HYVFWD--- 286
            +       HA A+++G     F   + +   C C                + V W+   
Sbjct: 393 QDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLI 452

Query: 287 --WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
             + +   +  A   F ++ A++ VSW  MI  Y+ +         F  ML SG  P EI
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           T   VL  C++   +E GR     + +  G +      + L+D+  ++G +  + RV  +
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVK-LGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQ 571

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           MP  E++++   A++     +G    +  + E +IE
Sbjct: 572 MP--EKNNITWTAMVQGLAENGFAEESISLFEDMIE 605



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 27/236 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIV 59
           S +   GK+ EA  LF++M   + VS  +MI+ +  N     A   F AM  S      +
Sbjct: 453 SGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEI 512

Query: 60  AESAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S+++        ++  R V  EI     E N++  T+L   Y K+  +D  RR+F +M
Sbjct: 513 TLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQM 572

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------------- 161
           P   KN ++WT +V G A NG   +   +    +  G+  N  T L              
Sbjct: 573 P--EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQ 630

Query: 162 AREYFVQMPNKDIVAWNAMITAYVD----AGNMAQASELF-NLMPQRNVWTWNAMI 212
           A  YF  M    I   +   T  VD    AG + +A EL   +  + +  +W++++
Sbjct: 631 AIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLL 686


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 258/541 (47%), Gaps = 62/541 (11%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLR-----------------NHDLP--------KAE 45
           + A  LFD + +P P  C ++I+   R                   D+P        K+ 
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 46  ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
           A+  A  + ++            +I  ++A++D Y K G +D A KVFDE+   +     
Sbjct: 96  AILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMN 155

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
            LI+GY K+  V + RRLFD M    +   SW +++   AH G   +   +    +  G 
Sbjct: 156 CLITGYSKSGDVVKARRLFDGM--VRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGA 213

Query: 154 ERNAMT-----------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
             NA+T                 K AR    +   ++++   A++  YV    + +A   
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARRE 273

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F+ M QR+V  W+ MI  YA+NG    +++L   M  +   PNE T   +L++C  +  +
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSD 333

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
            L   +   +  +     +Y  +    ++   G    V  AR  F R+E K V++W +M+
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH---VGRARSVFNRMEHKVVITWNSMM 390

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
              + +G       L+  M +   +P+EITFV +L+ C+HAGLV++G   F  M   +  
Sbjct: 391 RGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHV 450

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            P+ EH +C+ D+L ++G+++EA + +  M   E + V+   LL ACR H DV +A    
Sbjct: 451 SPQVEHCACIVDLLCKSGRLREAYKFICDMEV-EPNAVIWSTLLSACRAHADVELAKLAA 509

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
            +L+ L+P +S  YVL +N++A  G W +  ++R  M  + V+K++++S IE+ G+ H  
Sbjct: 510 SKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKF 569

Query: 495 L 495
           L
Sbjct: 570 L 570



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 62/301 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A K+FDEM   DP+    +IT + ++ D+ KA  LF  M   +R   + ++MI 
Sbjct: 133 NGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM--VRRTSASWNSMIA 190

Query: 67  GYVKAGRVDEARKVFDEIY-EG-------------------------------------N 88
            Y   G   EA ++F  +  EG                                     N
Sbjct: 191 CYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN 250

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL 141
           +   T+L+  Y K + +DE RR FDRM  + ++VV+W+T++ G A NG       L  ++
Sbjct: 251 MIVHTALMEMYVKCQAIDEARREFDRM--QQRDVVAWSTMIAGYAQNGRPHESLELFERM 308

Query: 142 EVISWT----------TMCTGLERNAMTKLAREYFVQMPNKDIVAW--NAMITAYVDAGN 189
           +  S            + C  L  + +      + V+  N  + ++  +A+I  Y   G+
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSH-VESQNLPLTSYLGSALIDMYTKCGH 367

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           + +A  +FN M  + V TWN+M+   A NG    A+ L   M +    PNE T  ++LT+
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 250 C 250
           C
Sbjct: 428 C 428


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 160/585 (27%), Positives = 268/585 (45%), Gaps = 111/585 (18%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D  S A+++  + +      A  +F  MPE   ++V+ +A+I  Y   G VDEA K F  
Sbjct: 86  DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGR 145

Query: 84  I-----YEG------NVYSWTSLISG---------------------------------- 98
           +     ++G      +V S  +L+S                                   
Sbjct: 146 MRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNS 205

Query: 99  ----YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LIA---- 139
               Y   + V    R+F+ +P++ ++VVSW +++ G   NG           +++    
Sbjct: 206 MVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTS 265

Query: 140 -----KLEVISWTTMCTGLERNAMTKLAREYFVQ-----MPNKDIVAWNAMITAYVDAGN 189
                ++ VI+    C  L     +    EY        +  KD+V   A++  +   GN
Sbjct: 266 AVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM------PNETTC 243
           +A A E+F+ +  +NV  W+AMI  Y +      A++L   M     M      PN  T 
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 244 TSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDV 293
            S++ +C  +  +  A   H  A+  G +Q+         +  KC             D+
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCG------------DI 433

Query: 294 NSARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
              R  F  ++   + VVSW++MI A   HG G +   LF+ M   G +P+EIT++ VLS
Sbjct: 434 EHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLS 493

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLVE+G+  FN M + YG  P  +HY+CL D+L RAG + EA  V+  MP  + D
Sbjct: 494 ACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPI-KAD 552

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + G+LL AC LHG+ ++ + + ++++ L  +S G +VL AN++   G WD+  ++R +
Sbjct: 553 LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVE 612

Query: 472 MERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           + R  ++K+   S IE+  + ++ +A     P  EM Y  L  +D
Sbjct: 613 LRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLD 657



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 35/269 (13%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LEN 256
           +  ++ + WN++I + A   P+  A+     M       N  T  ++L +C  +   L  
Sbjct: 13  ISHKDTFHWNSLIAKNATQNPQ-TALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 257 MLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
           +  HA   RLG     F     +     C + ++         +A++  E  E   DVVS
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYY---------AAQVFDEMPEGSVDVVS 122

Query: 311 WTAMILAYSNHGHGFQVFRLFARML-------KSGTKPDEITFVGVLSDCS---HAGLVE 360
           WTA+I AYS++G   + F+ F RM              D ++   ++S C+    +  + 
Sbjct: 123 WTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLR 182

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G     L+ + YGF       + +  +      V  A RV + +P  +RD V   +L+ 
Sbjct: 183 RGSAVHGLVVK-YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 421 ACRLHGDVRMA-----DYIGERLIELQPS 444
              L+G+   A     D + E    ++P+
Sbjct: 242 GFTLNGEAERALRTFEDMVSEGTSAVEPN 270


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 246/499 (49%), Gaps = 40/499 (8%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEA--LFRAMPESQRNIVA 60
            G   +A  + DEM     + + V+  S++ V  +  D+  A    L+      + ++  
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFV 353

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A+I+ Y K G +++ARK F +++  +V SW S+I+ Y +          F +M L   
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL--- 410

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN---KDIVAW 177
                         NG    L  +          R+     +   F+       +D+V  
Sbjct: 411 --------------NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-F 236
           NA++  Y   G +  A ++F ++P ++V +WN +I  YA+NG    A+++  +M + +  
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 237 MPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLD 292
           +PN+ T  SIL +      + + M  H   I+     +    +  TC   V+   G  +D
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV---FVATCLIDVYGKCGRLVD 573

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
             S    F ++  +  V+W A+I  +  HGH  +  +LF  ML  G KPD +TFV +LS 
Sbjct: 574 AMSL---FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 630

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+G VE+G+  F LM + YG KP  +HY C+ D+L RAG ++ A   +  MP  + D 
Sbjct: 631 CSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL-QPDA 688

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-K 471
            + GALLGACR+HG++ +  +  +RL E+   + G YVL +N++A  G+W+   +VR   
Sbjct: 689 SIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLA 748

Query: 472 MERRVKKVASFSQIEVKGK 490
            ER +KK   +S IEV  K
Sbjct: 749 RERGLKKTPGWSTIEVNRK 767



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 204/488 (41%), Gaps = 43/488 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  +   FD++ Q D  +  SMI+ ++ N    +A   F  +      I  +      
Sbjct: 165 GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSE-IRPDFYTFPP 223

Query: 68  YVKA-GRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            +KA G + + RK+    F   ++ NV+   SLI  Y +       R LFD MP   +++
Sbjct: 224 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMP--FRDM 281

Query: 123 VSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREY 165
            SW  ++ G   NG  A+                 + V+S   +C  L   +   L   Y
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 166 FVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            ++   + D+   NA+I  Y   GN+  A + F  M   +V +WN++I  Y +N     A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 225 MKLLNLMFQSRFMPNETTCT---SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
                 M  + F P+  T     SI+        +   H   +R G+  E  +       
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TK 340
            ++   G    ++SA   FE +  KDV+SW  +I  Y+ +G   +   ++  M +     
Sbjct: 462 -MYAKLGL---LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII 517

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P++ T+V +L   +H G +++G K    + +           +CL D+  + G++ +AM 
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDV-RMADYIGERLIE-LQPSS-SGAYVLSANVHA 457
           +  ++P  +   V   A++    +HG   +     GE L E ++P   +   +LSA  H+
Sbjct: 577 LFYQVP--QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 458 A---RGEW 462
                G+W
Sbjct: 635 GFVEEGKW 642



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 104/227 (45%), Gaps = 7/227 (3%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK-LLNLMFQSRFMP 238
           ++  Y + G+++ +   F+ +PQ++V+ WN+MI  Y  NG    A+     L+  S   P
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           +  T   +L +C  +++    H  A +LGF+    +    +  +++  +GF      AR 
Sbjct: 217 DFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVA--ASLIHMYSRFGF---TGIARS 271

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+ +  +D+ SW AMI     +G+  Q   +   M   G K + +T V +L  C   G 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +       +L    +G +      + L ++  + G +++A +   +M
Sbjct: 332 ISTAM-LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 229/470 (48%), Gaps = 61/470 (12%)

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGCA 133
           D A KVF  I   NV+ W  +I G  +  ++ +    + RM +  + N  ++ T+   C+
Sbjct: 84  DFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACS 143

Query: 134 -----------HNGLI---------------------AKLE------------VISWTTM 149
                      H  ++                      +LE            V+ W TM
Sbjct: 144 VAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTM 203

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             G  +  + + A+  F QMP K+I +WN MI      GN+  A +LF+ M +R+  +W+
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWS 263

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRL 266
           +M+D Y   G    A+++   M +    P     +S+L +C     + +    HA   R 
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 267 GFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
             + +  L       Y      D G+++        FE ++ +++ +W AMI   + HG 
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEV--------FEEMKEREIFTWNAMIGGLAIHGR 375

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                 LF+++ +   KP+ IT VGVL+ C+HAG V+KG + F  M   YG  P  EHY 
Sbjct: 376 AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYG 435

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+L R+G   EA  +++ M P + +  V GALLGACR+HG+  +A+ +G+ L+EL+P
Sbjct: 436 CMVDLLGRSGLFSEAEDLINSM-PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEP 494

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
            +SG YVL +N++A  G +D+ +++RK M +R +K V   S +++ G  H
Sbjct: 495 QNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVH 544



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 56/245 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G + +A KLFDEMS+ D +S +SM+  ++      +A  +F+ M   +            
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 56  --------------------RN-----IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                               RN      V  +A++D Y K GR+D   +VF+E+ E  ++
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIF 361

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPL-KLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           +W ++I G     + ++   LF ++   ++K N ++   V+  CAH G + K        
Sbjct: 362 TWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDK-------- 413

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWT 207
              GL    + +  RE++   P  ++  +  M+     +G  ++A +L N MP + N   
Sbjct: 414 ---GLR---IFQTMREFYGVDP--ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAV 465

Query: 208 WNAMI 212
           W A++
Sbjct: 466 WGALL 470



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 130/352 (36%), Gaps = 70/352 (19%)

Query: 172 KDIVAWNAMITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           +D     A++  Y +    N   A ++F+ +P  NV+ WN +I     N     A+    
Sbjct: 63  QDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYG 122

Query: 230 LM-FQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG------------------ 267
            M   +R  PN+ T  ++  +C   + + E    H   ++ G                  
Sbjct: 123 RMVIDAR--PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASF 180

Query: 268 --FEQETSLTYKCTCHYVFWD-----------------------------WGFQL----- 291
              E    + Y      V W+                             W   +     
Sbjct: 181 GRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAK 240

Query: 292 --DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             ++  AR  F+ +  +D +SW++M+  Y + G   +   +F +M +  T+P       V
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CS+ G +++GR     + R    K  A   + L D+  + G++     V  +M   E
Sbjct: 301 LAACSNIGAIDQGRWVHAYLKRN-SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK--E 357

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY---VLSANVHAA 458
           R+     A++G   +HG    A  +  +L E +   +G     VL+A  HA 
Sbjct: 358 REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 250/487 (51%), Gaps = 29/487 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    +++V+ +A++D Y ++G +D AR+V D + E N 
Sbjct: 289 SLITLYLRMGDAAAARKVFDEM--DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 346

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW +LI+ + +     E  +L+ +M       N+  +++V+  CA    +     I   
Sbjct: 347 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR 406

Query: 148 TMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           ++  G   N                 + A+  F  +P K+IV WN++ + Y   G M +A
Sbjct: 407 SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEA 466

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
             LF  MP RN+ +WN +I  YA+N     A++  N M  S  +P E T +S+L +C   
Sbjct: 467 MYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANL 526

Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
             ++   +AHA  I+LG E+   +    +  Y         D+ S++  F ++  ++ V+
Sbjct: 527 CSLVTGKMAHAKTIKLGMEESIFIGTALSDMY-----AKSGDLQSSKRMFYQMPERNDVT 581

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           WTAMI   + +G   +   L   M+ +G  P+E TF+ +L  CSH GLVE+    F  M 
Sbjct: 582 WTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKM- 640

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
           +A+G  P+ +HY+C+ D+L RAG++ EA  ++ K P     +    ALL AC  + +  +
Sbjct: 641 QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEAN-SWAALLSACNTYKNEEI 699

Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
            +   +RL EL   ++  YVL +N++A+ G W + A++R  M+   +KK    S ++V+G
Sbjct: 700 GERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRG 759

Query: 490 KDHTLLA 496
           + H   +
Sbjct: 760 QYHAFFS 766



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 206/446 (46%), Gaps = 61/446 (13%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P +   M+   ++  D+  A  LF  MPE  RN+V+ + M+D  +K GRV EA +++++ 
Sbjct: 151 PFTYDFMVHEHVKAGDIASARGLFDGMPE--RNVVSYTTMVDALMKRGRVAEAVELYEQC 208

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIA-KL 141
             G+V  +T+ ISG+ +         +F +M       N +++  ++  C   G     +
Sbjct: 209 PSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAM 268

Query: 142 EVISWTTMCTGLE-----RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDA 187
            ++         E     +N++  L         AR+ F +M  KD+V+W A++  Y ++
Sbjct: 269 SIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSES 328

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  + + MP+RN  +W  +I R+ + G    A+KL + M      PN +  +S+L
Sbjct: 329 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 388

Query: 248 TSCEGMLENMLA----HALAIRLG-----FEQETSLTYKCTC----------------HY 282
           ++C   LE++      HA ++++G     F   + +   C C                + 
Sbjct: 389 SAC-ATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI 447

Query: 283 VFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           V W+     + +   +  A   F+++ A+++ SW  +I  Y+ +       R F  ML S
Sbjct: 448 VCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLAS 507

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGR----KTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           G  P EITF  VL  C++   +  G+    KT  L     G +      + L+D+  ++G
Sbjct: 508 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL-----GMEESIFIGTALSDMYAKSG 562

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALL 419
            ++ + R+  +MP  ER+ V   A++
Sbjct: 563 DLQSSKRMFYQMP--ERNDVTWTAMI 586


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 258/541 (47%), Gaps = 62/541 (11%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVF-----------------LRNHDLP--------KAE 45
           + A  LFD + +P P  C ++I+                    R  D+P        K+ 
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 46  ALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
           A+  A  + ++            +I  ++A++D Y K G +D A KVFDE+   +     
Sbjct: 96  AILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMN 155

Query: 94  SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
            LI+GY K+  V + RRLFD M    +   SW +++   AH G   +   +    +  G 
Sbjct: 156 CLITGYSKSGDVVKARRLFDGM--VRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGA 213

Query: 154 ERNAMT-----------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
             NA+T                 K AR    +   ++++   A++  YV    + +A   
Sbjct: 214 RPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARRE 273

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F+ M QR+V  W+ MI  YA+NG    +++L   M  +   PNE T   +L++C  +  +
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSD 333

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMI 315
            L   +   +  +     +Y  +    ++   G    V  AR  F R+E K V++W +M+
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH---VGRARSVFNRMEHKVVITWNSMM 390

Query: 316 LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
              + +G       L+  M +   +P+EITFV +L+ C+HAGLV++G   F  M   +  
Sbjct: 391 RGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHV 450

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
            P+ EH +C+ D+L ++G+++EA + +  M   E + V+   LL ACR H DV +A    
Sbjct: 451 SPQVEHCACIVDLLCKSGRLREAYKFICDMEV-EPNAVIWSTLLSACRAHADVELAKLAA 509

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTL 494
            +L+ L+P +S  YVL +N++A  G W +  ++R  M  + V+K++++S IE+ G+ H  
Sbjct: 510 SKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKF 569

Query: 495 L 495
           L
Sbjct: 570 L 570



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 132/301 (43%), Gaps = 62/301 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G +  A K+FDEM   DP+    +IT + ++ D+ KA  LF  M   +R   + ++MI 
Sbjct: 133 NGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGM--VRRTSASWNSMIA 190

Query: 67  GYVKAGRVDEARKVFDEIY-EG-------------------------------------N 88
            Y   G   EA ++F  +  EG                                     N
Sbjct: 191 CYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN 250

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL 141
           +   T+L+  Y K R +DE RR FDRM  + ++VV+W+T++ G A NG       L  ++
Sbjct: 251 MIVHTALMEMYVKCRAIDEARREFDRM--QQRDVVAWSTMIAGYAQNGRPHESLELFERM 308

Query: 142 EVISWT----------TMCTGLERNAMTKLAREYFVQMPNKDIVAW--NAMITAYVDAGN 189
           +  S            + C  L  + +      + V+  N  + ++  +A+I  Y   G+
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSH-VESQNLPLTSYLGSALIDMYTKCGH 367

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           + +A  +FN M  + V TWN+M+   A NG    A+ L   M +    PNE T  ++LT+
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 250 C 250
           C
Sbjct: 428 C 428


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 247/518 (47%), Gaps = 48/518 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN 57
           S F   G  +E  + + +M      PD  +    I   L   ++ K   L       + +
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKF-GLELD 170

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP- 116
           +   SA+++ Y+K G ++ A+  F+E+   +V  W ++++GY +  Q +     F RM  
Sbjct: 171 VFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMND 230

Query: 117 -------LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
                    +  V+S    V+G  +NG      +I    M  G +               
Sbjct: 231 ESVVPSRFTVTGVLS-VFAVMGDLNNG-----RIIHGFAMKMGYDSG------------- 271

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
               +   N++I  Y     +  A E+F +M ++++++WN+++  + + G     ++LL+
Sbjct: 272 ----VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLD 327

Query: 230 LMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQE----TSLTYKCTCHY 282
            M  +   P+  T T++L +C     ++     H   I  G  ++      +  K     
Sbjct: 328 RMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVID 387

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
           ++   G   D   A L FER+  KDV SW  MI+ Y  HG+G +   +F+RM +   KPD
Sbjct: 388 MYAKCGSMRD---AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPD 444

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           E+TFVGVLS CSHAG V +GR     M   Y   P  EHY+C+ D+L RAGQ+ EA  + 
Sbjct: 445 EVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELA 504

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             MP  E + VV  ALL ACRLH    +A+   +R+ EL+P   G+YVL +NV+ A G +
Sbjct: 505 LTMPI-EANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRY 563

Query: 463 DEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           +E  +VR  M ++ V+K    S IE+K   H  ++  R
Sbjct: 564 EEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADR 601



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 178/419 (42%), Gaps = 57/419 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +++I+ Y K  +++ A  +F D  +E NV+++ ++ISG+      +EG   + +M  + +
Sbjct: 76  TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKM--RNE 133

Query: 121 NVVSWTTVVLGCAHNGLIAKLEV--ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            V+        CA    +  LE+  I       GLE                  D+   +
Sbjct: 134 GVIP-DKFTFPCAIKACLDVLEIKKIHGLLFKFGLEL-----------------DVFIGS 175

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y+  G M  A   F  +P R+V  WNAM++ YA+ G     ++    M     +P
Sbjct: 176 ALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVP 235

Query: 239 NETTCTSILT--SCEGMLEN-MLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWG 288
           +  T T +L+  +  G L N  + H  A+++G++   +++        KC C        
Sbjct: 236 SRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC-------- 287

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  A   FE +  KD+ SW +++  +   G      RL  RML +G +PD +T   
Sbjct: 288 ----IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY------SCLADILRRAGQVKEAMRVV 402
           VL  CSH   +  GR+    M  + G     +        + + D+  + G +++A  V 
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVS-GLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF 402

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSSGAYVLSANVHAA 458
            +M    +D      ++    +HG    A  +  R+ E+Q      +   VLSA  HA 
Sbjct: 403 ERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459


>gi|302812935|ref|XP_002988154.1| hypothetical protein SELMODRAFT_127120 [Selaginella moellendorffii]
 gi|300144260|gb|EFJ10946.1| hypothetical protein SELMODRAFT_127120 [Selaginella moellendorffii]
          Length = 433

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 237/486 (48%), Gaps = 64/486 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G V EA K++D++  P       M+T + +N  L +A+ +F +M +  + +V+ ++
Sbjct: 2   FGKCGSVAEARKIYDKVEDPGVHGNTIMLTAYTQNGYLREAKEMFDSMRD--KGVVSWTS 59

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ G+ +  R+ EA   FD++ + NV +W +L++GY +   +DE   +F  MP       
Sbjct: 60  MVSGFAEHSRLREASDFFDKMPQWNVVTWNALLTGYARHGHLDEACSMFQVMP------- 112

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
                           +L + SWTT+ + L ++     AR  F ++P  + ++WN MI  
Sbjct: 113 ----------------QLNLTSWTTVVSSLCQHGRLDEARILFERIPQWNTLSWNYMIQG 156

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y     +  A +LF+ MP R+  +W A+I  YA+N    +A +    MF    MP++   
Sbjct: 157 YAKGRRLEDAKQLFDRMPYRDAASWTAIIAEYAQNAHLDSAGR----MFAR--MPSQNVV 210

Query: 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           T           N++  A A     E+ +SL         FW             +    
Sbjct: 211 T----------WNVMLVAYAQNGHLEKASSL---------FW-------------SMPER 238

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
           +  DVVSW  +I  Y+  G G     +F  M+  GT+PD +TF GVL  C+H GL+ +G 
Sbjct: 239 DIVDVVSWNMIIHGYAQSGQGDCGMLVFQAMVLDGTRPDNVTFTGVLLTCNHVGLLSQGE 298

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
             F  M   +G  P  EH++ L D L R GQ++ A  V+  M P+E D +     L  C+
Sbjct: 299 VMFVSMVEDHGLVPGVEHFNLLIDNLGRCGQLQRAEDVLHTM-PYEADPLTWTTFLNLCK 357

Query: 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFS 483
           +HGD++ A+   ER+++LQP SS  YVL  N++A   E  +   + +   ++  K+++ S
Sbjct: 358 VHGDLKRAELAAERVVKLQPESSAPYVLLYNIYAVPDEKRKHGLLSRLSRKQRSKISAGS 417

Query: 484 QIEVKG 489
           ++   G
Sbjct: 418 RLHDSG 423



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 133/252 (52%), Gaps = 28/252 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F    +++EA+  FD+M Q + V+  +++T + R+  L +A ++F+ MP  Q N+ + 
Sbjct: 62  SGFAEHSRLREASDFFDKMPQWNVVTWNALLTGYARHGHLDEACSMFQVMP--QLNLTSW 119

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + ++    + GR+DEAR +F+ I + N  SW  +I GY K R++++ ++LFDRMP +   
Sbjct: 120 TTVVSSLCQHGRLDEARILFERIPQWNTLSWNYMIQGYAKGRRLEDAKQLFDRMPYR--- 176

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                               +  SWT +     +NA    A   F +MP++++V WN M+
Sbjct: 177 --------------------DAASWTAIIAEYAQNAHLDSAGRMFARMPSQNVVTWNVML 216

Query: 182 TAYVDAGNMAQASELFNLMPQR---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            AY   G++ +AS LF  MP+R   +V +WN +I  YA++G     M +   M      P
Sbjct: 217 VAYAQNGHLEKASSLFWSMPERDIVDVVSWNMIIHGYAQSGQGDCGMLVFQAMVLDGTRP 276

Query: 239 NETTCTSILTSC 250
           +  T T +L +C
Sbjct: 277 DNVTFTGVLLTC 288


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 229/467 (49%), Gaps = 34/467 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++     +ID Y K G +D+ARK+ + + + +V SWTS+I+GY +    +E    F  
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMPNK 172
           M    ++   W               + + S  + C G++  R  +   AR Y V     
Sbjct: 438 M----QDCGVWPD------------NIGLASAASACAGIKAMRQGLQIHARVY-VSGYAA 480

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI  WN ++  Y   G   +A  LF  +  ++  TWN +I  + ++     A+ +   M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 233 QSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           Q+    N  T  S +++   +    +    H  A++ G   ET +       Y     G 
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLY-----GK 595

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A++ F  +  ++ VSW  +I + S HG G +   LF +M + G KP+++TF+GV
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGV 655

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH GLVE+G   F  MS  YG  P  +HY+C+ DIL RAGQ+  A R V +MP   
Sbjct: 656 LAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI-T 714

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + ++   LL AC++H ++ + +   + L+EL+P  S +YVL +N +A  G+W    QVR
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVR 774

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           K M +R ++K    S IEVK   H       L P+ +  Y  L E++
Sbjct: 775 KMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 191/445 (42%), Gaps = 43/445 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
           S +  +G  KEA +L+ +M      P P   +S+++   +     +   +   + +    
Sbjct: 117 SGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC 176

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                 +A+I  Y+  G    A +VF ++   +  ++ +LISG+ +    +   ++FD M
Sbjct: 177 SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM 236

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            L     + V+  +++  CA  G + K + +    +  G+  + +T+             
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE------------- 283

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
                +++  YV  G++  A ++FNL  + NV  WN M+  Y +      + ++   M  
Sbjct: 284 ----GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 234 SRFMPNETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           +   PN+ T   IL   +C G +E     H+L+I+ GFE +  ++      Y  +     
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGC--- 396

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             ++ AR   E LE +DVVSWT+MI  Y  H    +    F  M   G  PD I      
Sbjct: 397 --LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 351 SDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           S C  AG ++  R+   + +R Y  G+      ++ L ++  R G+ +EA  +  ++   
Sbjct: 455 SAC--AG-IKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREI--E 509

Query: 409 ERDHVVLGALL---GACRLHGDVRM 430
            +D +    L+   G  RL+    M
Sbjct: 510 HKDEITWNGLISGFGQSRLYKQALM 534



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 40/353 (11%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V +AR+VF E+   +  SW +++SGY ++    E  RL+ +M        
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQM-------- 135

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAWNAMIT 182
            WT V+             + S  + CT  +  A  ++   + + Q    +    NA+I 
Sbjct: 136 HWTAVI--------PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIA 187

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+   A  +F  M   +  T+N +I  +A+ G    A+++ + M  S   P+  T
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 243 CTSILTSCEGMLE-----NMLAHALAIRLGFEQET-----SLTYKCTCHYVFWDWGFQLD 292
             S+L +C  + +      + ++ L   + F+  T      L  KC             D
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG------------D 295

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           + +A   F   +  +VV W  M++AY       + F +F +M  +G  P++ T+  +L  
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRT 355

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           C+  G +E G +  +L S   GF+        L D+  + G + +A +++  +
Sbjct: 356 CTCTGQIELGEQIHSL-SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEML 407



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 12/250 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D +  N +I  Y   G + QA ++F  +  R+  +W AM+  YA++G    A +L + M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMH 136

Query: 233 QSRFMPNETTCTSILTSC-EGML--ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            +  +P     +S+L++C +G L  +  + HA   +  F  ET +       Y+ +   F
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG-SF 195

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
           +L    A   F  +   D V++  +I  ++  GHG    ++F  M  SG +PD +T   +
Sbjct: 196 KL----AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ C+  G ++KG++  + + +A G          L D+  + G ++ A  + +     +
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKA-GMSFDYITEGSLLDLYVKCGDIETAHDIFN---LGD 307

Query: 410 RDHVVLGALL 419
           R +VVL  L+
Sbjct: 308 RTNVVLWNLM 317


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/531 (28%), Positives = 255/531 (48%), Gaps = 90/531 (16%)

Query: 5   GCTGKVKE-ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           G  GK  E A +LFD++   D +S  SMI+ ++ N    +   +++ M            
Sbjct: 195 GIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 52  -------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       +R I   + ++D Y K G +D A +VF+++ E
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            NV SWTS+I+GY +  + D   +L  +M    +KL +VV+ T+++  CA +G +   + 
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL-DVVAITSILHACARSGSLDNGKD 373

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +        +E N                 +   NA++  Y   G+M  A+ +F+ M  +
Sbjct: 374 VHDYIKANNMESN-----------------LFVCNALMDMYAKCGSMEAANSVFSTMVVK 416

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAH 260
           ++ +WN MI                         P+  T   +L +C  +  LE     H
Sbjct: 417 DIISWNTMI---------------------GELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              +R G+  +  +       YV    G    +  ARL F+ + +KD+VSWT MI  Y  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYV--KCGV---LGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +    F  M  +G +PDE++F+ +L  CSH+GL+E+G + F +M   +  +P+ E
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R G + +A   +  +P    D  + GALL  CR + D+ +A+ + ER+ E
Sbjct: 571 HYACMVDLLSRTGNLSKAYEFIETLPIAP-DATIWGALLCGCRNYHDIELAEKVAERVFE 629

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           L+P +SG YVL AN++A   +W+E  ++R+K+ ++ ++K    S IE+KGK
Sbjct: 630 LEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 181/433 (41%), Gaps = 68/433 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G +KE  ++FD M + +      M++ + +  D  ++  LF+ M E       
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG----- 195

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----- 115
                   ++  R + A ++FD++ + +V SW S+ISGY      + G  ++ +M     
Sbjct: 196 --------IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 247

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            + L  ++S   V++GCA++G ++  + +    + +  ER                  I 
Sbjct: 248 DVDLATIIS---VLVGCANSGTLSLGKAVHSLAIKSSFERR-----------------IN 287

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N ++  Y   G++  A  +F  M +RNV +W +MI  Y R+G    A+KLL  M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 236 FMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
              +    TSIL +C   G L+N       I+     E++L     C+ +   +     +
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLF---VCNALMDMYAKCGSM 403

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +A   F  +  KD++SW  MI                        KPD  T   VL  C
Sbjct: 404 EAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACVLPAC 442

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +E+G++    + R  G+       + L D+  + G +  A R++  M P  +D V
Sbjct: 443 ASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIP-SKDLV 499

Query: 414 VLGALLGACRLHG 426
               ++    +HG
Sbjct: 500 SWTVMIAGYGMHG 512



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 60/280 (21%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ------ 233
           +++ Y   G++ +   +F+ M ++NV+ WN M+  YA+ G    ++ L  +M +      
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 234 ------------------------SRFMPNE---------------------TTCTSILT 248
                                   S ++ N                       T  S+L 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 249 SC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            C   G L      H+LAI+  FE+   + +  T   ++   G   D++ A   FE++  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERR--INFSNTLLDMYSKCG---DLDGALRVFEKMGE 314

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++VVSWT+MI  Y+  G      +L  +M K G K D +    +L  C+ +G ++ G+  
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + + +A   +      + L D+  + G ++ A  V S M
Sbjct: 375 HDYI-KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 231/453 (50%), Gaps = 48/453 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N+   SA+++ Y+K    ++A KVF+E+ E +V  W ++I+GY K   +++   +F R
Sbjct: 106 ELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKR 165

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M  +  ++  +TT                 S  ++ T +      +       +M     
Sbjct: 166 MGEEGISLSRFTTT----------------SILSILTSMGDINNGRAIHGIVTKMGYSSC 209

Query: 175 VAW-NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           VA  NA+I  Y    +   A  +F ++ ++++++WN++I  + +       ++L   M  
Sbjct: 210 VAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLG 269

Query: 234 SRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETS------------LTYKC 278
           SR +P+  T T++L +C     ++     H   I  G  +  +            +  KC
Sbjct: 270 SRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKC 329

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            C            + +A + F+ +  KDV SW  MI+ Y+ HG+G +   +F RM ++ 
Sbjct: 330 GC------------MKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQ 377

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KPD +TFVGVLS CSHAG V +GR     M   +G  P  EHY+C+ D+L RAG + EA
Sbjct: 378 IKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEA 437

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP--SSSGAYVLSANVH 456
             +  ++P  E + ++  ALLGACRLHG+  + + +GE++ +L+P    SG+Y+L ++++
Sbjct: 438 YDLAQRIPL-EDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLY 496

Query: 457 AARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
              G ++E  +VR+ M E+ VKK    S IE+K
Sbjct: 497 GVVGRYEEALEVRRTMKEQNVKKTPGCSWIELK 529



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 137/325 (42%), Gaps = 53/325 (16%)

Query: 62  SAMIDGYVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--K 118
           +++I+ Y +  +++EA  VF D  +E NV+++ ++I+G+       +G + + RM     
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM--------------TKLARE 164
           + +  ++  VV  C       ++  I       GLE N                T+ A +
Sbjct: 74  MPDKFTFPCVVRACCE---FMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F ++P +D+V WNAMI  Y   G++ +A  +F                   R G EG +
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFK------------------RMGEEGIS 172

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           +        SRF    T+  SILTS   +      H +  ++G+    +++      Y  
Sbjct: 173 L--------SRF--TTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMY-- 220

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
              G       A + FE +  KD+ SW ++I A+          RLF +ML S   PD I
Sbjct: 221 ---GKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVI 277

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLM 369
           T   VL  CSH   +  GR+    M
Sbjct: 278 TITAVLPACSHLAALMHGREIHGYM 302



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 11/237 (4%)

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAA 224
           F+ +P+    +  ++I  Y     M +A  +F +   +RNV+ +NA+I  +  NG     
Sbjct: 6   FIHLPS----SITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADG 61

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
            +    M     MP++ T   ++ +C   +E    H    ++G E    +       Y+ 
Sbjct: 62  FQFYKRMRSVGVMPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLK 121

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D         A   FE L  +DVV W AMI  Y+  GH  +   +F RM + G      
Sbjct: 122 VD-----GTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRF 176

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           T   +LS  +  G +  GR    ++++  G+       + L D+  +    ++A+ +
Sbjct: 177 TTTSILSILTSMGDINNGRAIHGIVTKM-GYSSCVAVSNALIDMYGKCKHTEDALMI 232



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 19/163 (11%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E+  +++  +A++D Y K G +  A  +FD +   +V SW  +I GY       E   +F
Sbjct: 311 ENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMF 370

Query: 113 DRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            RM   ++K +VV++  V+  C+H G + +              R+ +T++  E+ V +P
Sbjct: 371 HRMCEAQIKPDVVTFVGVLSACSHAGFVHQ-------------GRSFLTRMELEFGV-IP 416

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
              I  +  +I     AG++ +A +L   +P + N+  W A++
Sbjct: 417 T--IEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALL 457


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%)

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           +  LA + F  MP +  V +N +I+  +  G +A A E+F+ MP  +  +W A+ID   +
Sbjct: 120 LPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVK 179

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSL 274
           NG    A+     M      P+  T  +++++C   G L   M  H L +R G E+   +
Sbjct: 180 NGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRI 239

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                  Y          V  AR  F  +  + VVSW +MI+ ++ +G        F  M
Sbjct: 240 ANSLIDMYARCG-----QVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 294

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G KPD +TF GVL+ CSH GL ++G + ++LM   YG   R EHY C+ D+L R+G+
Sbjct: 295 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGR 354

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EAMRVV+ MP  P+E   VVLGALL  CR+HGDV MA+ + + L+EL P     YVL 
Sbjct: 355 LEEAMRVVTTMPMRPNE---VVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLL 411

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +N++AA G+WD   +VR  M+ R ++K   +S +E+ G  H  ++
Sbjct: 412 SNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVS 456



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 112/301 (37%), Gaps = 66/301 (21%)

Query: 47  LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
           LF AMP   R+ V  + +I G ++ G V  A +VFD +   +  SWT+LI G  K  + D
Sbjct: 127 LFDAMP--VRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 184

Query: 107 EGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN-------- 156
           E    F  M L     + V+   V+  CA  G +     +    +  GLERN        
Sbjct: 185 EAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLI 244

Query: 157 ------AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM------PQRN 204
                    +LAR+ F  M  + +V+WN+MI  +   G  A A E F  M      P   
Sbjct: 245 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAV 304

Query: 205 VWT----------------------------------WNAMIDRYARNGPEGAAMKLLNL 230
            +T                                  +  ++D   R+G    AM+++  
Sbjct: 305 TFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTT 364

Query: 231 MFQSRFMPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           M      PNE    ++L  C      GM E ++ H L +  G +    L          W
Sbjct: 365 M---PMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 421

Query: 286 D 286
           D
Sbjct: 422 D 422



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 35/236 (14%)

Query: 204 NVWTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
           +V +W + I R A+ G     AA     L   +  +PN+ T  ++L++C     + LA  
Sbjct: 29  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88

Query: 262 LAIR-----LGFEQETSLTYKCTCHYVFWD----WGFQL-DVNSARLA------------ 299
           LA+      L       L   C   + F         QL D    R A            
Sbjct: 89  LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 148

Query: 300 ----------FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                     F+ + A D VSWTA+I     +G   +    F  ML  G +PD +T + V
Sbjct: 149 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAV 208

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +S C+  G +  G     L+ R  G +      + L D+  R GQV+ A +V S M
Sbjct: 209 ISACAEVGALGLGMWVHRLVVR-QGLERNVRIANSLIDMYARCGQVELARQVFSGM 263


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 258/532 (48%), Gaps = 56/532 (10%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           +G  G + E+  +F +M      P+  +  S++        L   E +   + +S  Q N
Sbjct: 390 YGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFN 449

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP- 116
           +   S +ID Y K G +D AR +   + E +V SWT++I+GY +     E  +LF  M  
Sbjct: 450 VYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMEN 509

Query: 117 --LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
             ++  N+  +++ +  CA  G+ A                N   ++  + ++   ++D+
Sbjct: 510 QGIRSDNI-GFSSAISACA--GIQA---------------LNQGQQIHAQSYISGYSEDL 551

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA+++ Y   G    A   F  +  ++  +WNA+I  +A++G    A+++ + M Q+
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 235 RFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQET-------SLTYKCTCHYVF 284
               N  T  S +++      + +    HA+ I+ G++ ET       +L  KC      
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCG----- 666

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +  A+  F  +  K+VVSW AMI  YS HG+G +   LF  M + G  P+ +
Sbjct: 667 -------SIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHV 719

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
           TFVGVLS CSH GLV +G   F  MS+ +G  P+ EHY C+ D+L RA  +  A   + +
Sbjct: 720 TFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEE 779

Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
           MP  E D ++   LL AC +H ++ + ++    L+EL+P  S  YVL +N++A  G+WD 
Sbjct: 780 MPI-EPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDY 838

Query: 465 FAQVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
             + R+ M +R VKK    S IEVK   H       L P+ E  Y  + +++
Sbjct: 839 RDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLN 890



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 50/377 (13%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
           +ID Y K G VD A+ VF+ ++  +  SW ++ISG  +  + DE   LF +M        
Sbjct: 153 LIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPT 212

Query: 116 PLKLKNVVSWTTVV----LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           P    +V+S  T +    LG   +G I K  + S T +C                     
Sbjct: 213 PYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC--------------------- 251

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                 NA++T Y   GN+  A ++F+ M +R+  ++N++I   A+ G    A++L   M
Sbjct: 252 ------NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 232 FQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 P+  T  S+L++C  +    +    H+  I++G   +  +       YV     
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKC--- 362

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              D+ +A   F   E ++VV W  M++AY   G+  + + +F +M   G  P++ T+  
Sbjct: 363 --FDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPS 420

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  C+  G ++ G +    + ++ GF+      S L D+  + G++  A  ++ ++   
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRL--R 477

Query: 409 ERDHVVLGALLGACRLH 425
           E D V   A++     H
Sbjct: 478 EEDVVSWTAMIAGYTQH 494



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 16/253 (6%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y+  G +  A +LF+ +P  NV  WN +I            + L +LM      P+
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPD 110

Query: 240 ETTCTSILTSCEG------MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           E+T  S+L +C G      + E +  HA  I  GF      +    C+ +   +     V
Sbjct: 111 ESTFASVLRACSGGKAPFQVTEQI--HAKIIHHGFG-----SSPLVCNPLIDLYSKNGHV 163

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           + A+L FERL  KD VSW AMI   S +G   +   LF +M KS   P    F  VLS C
Sbjct: 164 DLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +   L + G +    + + +G        + L  +  R G +  A ++ SKM  H RD +
Sbjct: 224 TKIELFKLGEQLHGFIVK-WGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM--HRRDRI 280

Query: 414 VLGALLGACRLHG 426
              +L+      G
Sbjct: 281 SYNSLISGLAQRG 293



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 35/249 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEALFRAMPESQRN 57
           S F  +G  +EA ++F +M+Q     +  +  S ++      ++ + + +   M ++  +
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD 649

Query: 58  IVAESA--MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
              E++  +I  Y K G +++A++ F E+ E NV SW ++I+GY +     E   LF+ M
Sbjct: 650 SETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEM 709

Query: 116 PL--KLKNVVSWTTVVLGCAH-----------------NGLIAKLEVISWTTMCTGLERN 156
                + N V++  V+  C+H                 +GL+ K E   +  +   L R 
Sbjct: 710 KQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPE--HYVCVVDLLGRA 767

Query: 157 AMTKLAREYFVQMP-NKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNA 210
           A+   ARE+  +MP   D + W  +++A      ++ G  A A  L  L P+ +  T+  
Sbjct: 768 ALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFA-ARHLLELEPEDSA-TYVL 825

Query: 211 MIDRYARNG 219
           + + YA +G
Sbjct: 826 LSNMYAVSG 834


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 232/453 (51%), Gaps = 30/453 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++  Y  AG + ++R+ FDE+ + NV SW S+I GY +A    E   LF  M  +  L
Sbjct: 151 NALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFL 210

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK--------------LAREY 165
           ++  +  ++++ C+  G +    ++    + +G   + + +              +AR  
Sbjct: 211 EDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRC 270

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  MP K +V+W +M+ A    G++  A   F+ MP+RN+ +WNAMI  Y + G    A+
Sbjct: 271 FEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEAL 330

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLG-FEQETSLTYKCTC 280
            L N M      P+E T  ++L++  G + ++    + H L IR   +  + SL      
Sbjct: 331 DLYNQMQSQGLAPDEITLVAVLSA-SGRIGDLTVGKMVH-LYIRDNIYNPDVSLVNSLLD 388

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            Y          V++A   F  +  ++VVSW  +I   + HG        F  M+     
Sbjct: 389 MYAKCG-----QVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFA 443

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           PD ITFV +LS CSH GL+E G+  F  M   Y  K   EHY+C+ D+L R G +++A+ 
Sbjct: 444 PDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVC 503

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++ +MP  + D VV GALLGACR+HG+V++   + ++L+EL+  S G +VL +N+     
Sbjct: 504 LIKEMPM-KPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETH 562

Query: 461 EWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
           +W++  ++RK M E   +K    S IE+    H
Sbjct: 563 QWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIH 595



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 41/355 (11%)

Query: 8   GKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAE 61
           G  +E   LF EM +     D  +  S++    +  +L     +   M    S+ +++ E
Sbjct: 192 GDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILE 251

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           SA++D Y K G +  AR+ F+ +   +V SWTS++    K   V+  R  FD MP   +N
Sbjct: 252 SALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMP--ERN 309

Query: 122 VVSWTTVV-----LGCAHNGL---------------IAKLEVISWTTMCTGLERNAMTKL 161
           +VSW  ++      G  H  L               I  + V+S +     L    M  L
Sbjct: 310 IVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHL 369

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                +  P+  +V  N+++  Y   G +  A  LF+ M  RNV +WN +I   A +G  
Sbjct: 370 YIRDNIYNPDVSLV--NSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRA 427

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLT-YKC 278
              +     M    F P+  T  ++L++C   G+LE    +  ++R  +  +  +  Y C
Sbjct: 428 LDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYAC 487

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGH---GFQVFR 329
               +    G +  +  A    + +  K DVV W A++ A   HG+   G QV +
Sbjct: 488 MVDLL----GRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIK 538


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 135/447 (30%), Positives = 233/447 (52%), Gaps = 27/447 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
           + M+D   K G +D A ++F+++   NV+ + S+I  Y       +  R++ ++      
Sbjct: 46  TKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIE 105

Query: 116 -------PLKLKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLARE 164
                  P   K+  S  +  LG   +G + K      V++   +     +      A +
Sbjct: 106 FPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHK 165

Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            F +M  +D+++WN++++ Y   G M +A  LF+LM  + + +W AMI  Y   G    A
Sbjct: 166 VFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEA 225

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCH 281
           M     M  +   P+E +  S+L SC   G LE     H  A R G  ++T +     C+
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGV-----CN 280

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
            +   +     ++ A   FE+ + KDV+SW+ MI  Y+ HG+  + F  F  M ++  KP
Sbjct: 281 ALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKP 340

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           + ITF+G+LS CSH GL ++G K F++M + Y  +P+ EHY CL D+L RAG+++ A+ +
Sbjct: 341 NGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEI 400

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
              MP  + D  + G+LL +CR  G++ +A    + L+E++P   G YVL AN++A  G+
Sbjct: 401 TKTMPV-KPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGK 459

Query: 462 WDEFAQVRKKMERR-VKKVASFSQIEV 487
           W++ +++RK + +  +KK    S IEV
Sbjct: 460 WEDVSRLRKIIRKENMKKTPGCSLIEV 486



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 131/273 (47%), Gaps = 28/273 (10%)

Query: 27  SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
           SCAS+ + +L          L++  P  + ++V E+A+ID Y+K   + +A KVFDE+ E
Sbjct: 118 SCASLGSCYLGKQ---VHGHLYKFGP--RFHVVTENALIDMYMKFDDLVDAHKVFDEMSE 172

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV-----LGCAHNGL---- 137
            +V SW SL+SGY +  Q+ + + LF  M    K +VSWT ++     +GC    +    
Sbjct: 173 RDVISWNSLLSGYARLGQMKKAKGLFHLMI--DKTIVSWTAMISGYTGIGCYVEAMDFFR 230

Query: 138 ---IAKLE-----VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
              +A +E     +IS    C  L    + K    Y  +    K     NA+I  Y   G
Sbjct: 231 EMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCG 290

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            ++QA +LF     ++V +W+ MI  YA +G    A +    M +++  PN  T   +L+
Sbjct: 291 MLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLS 350

Query: 249 SCE--GMLENMLAHALAIRLGFEQETSLT-YKC 278
           +C   G+ +  L +   +R  ++ E  +  Y C
Sbjct: 351 ACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGC 383


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 157/550 (28%), Positives = 258/550 (46%), Gaps = 71/550 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G++  + K+FDEM   + V+  ++IT  +R        A F  M  S+            
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 56  -------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     N    +++   Y K G++D     F ++   +V 
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT++++ Y +  + D G + F RM     + N  +++ V+  CA+   +   E +    
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +C G   NA++               VA N+++T Y   G +A  S++F  M  R++ TW
Sbjct: 345 LCVGF-VNALS---------------VA-NSIMTLYSKCGELASVSKVFCSMKFRDIITW 387

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR 265
           + +I  Y++ G    A + L+ M      PNE    S+L+ C  M    +    HA  + 
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +G EQ TS+     C  +   +     +  A   F      D++SWTAMI  Y+ HGH  
Sbjct: 448 VGLEQ-TSMV----CSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQ 502

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF  + K G +PD +TF+GVL+ CSHAG+V+ G   FN MS+ Y   P  EHY C+
Sbjct: 503 EAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ +A  ++  MP  + D VV   LL ACR+HGDV         +++L P+ 
Sbjct: 563 IDLLCRAGRLHDAETLIRSMPI-QWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNC 621

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMR 499
           +G ++  AN+ AA+G+W E A +R  M+ + V K   +S ++VK      ++     P  
Sbjct: 622 AGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQG 681

Query: 500 EMGYVVLKEV 509
           E  Y +L+E+
Sbjct: 682 EDIYNILEEL 691



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 205/500 (41%), Gaps = 75/500 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQ---------- 55
           T  +K+A  LFD++ Q D VS  ++I+ ++ + D  +A  LF  M  +S+          
Sbjct: 62  TNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSL 121

Query: 56  ---------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       ++   SA++D Y+K G +  + KVFDE+   N
Sbjct: 122 GLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRN 181

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLIAKLEVISW 146
             +WT++I+G  +A   + G   F  M        S+   +     A +G +     I  
Sbjct: 182 AVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHT 241

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            T+  G + N+                    N++ T Y   G +      F  M   +V 
Sbjct: 242 QTLKKGFDENSFVA-----------------NSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML-----ENMLAHA 261
           +W  ++  Y + G E   ++    M  S  +PNE T +++++ C         E + AH 
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           L +  GF    S+       Y         ++ S    F  ++ +D+++W+ +I AYS  
Sbjct: 345 LCV--GFVNALSVANSIMTLYSKCG-----ELASVSKVFCSMKFRDIITWSTIIAAYSQV 397

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G+G + F   +RM   G KP+E     VLS C    ++E+G K  +    + G +  +  
Sbjct: 398 GYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG-KQLHAHVLSVGLEQTSMV 456

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--I 439
            S L  +  + G + EA ++   M   + D +   A++     HG  + A  + E +  +
Sbjct: 457 CSALIIMYAKCGSIAEASKIF--MDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKV 514

Query: 440 ELQPSS-SGAYVLSANVHAA 458
            L+P S +   VL+A  HA 
Sbjct: 515 GLRPDSVTFIGVLTACSHAG 534



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 28/302 (9%)

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           VK   + +AR +FD++ + +  SWT++ISGY  +    E  RLF +M L+ +  +    +
Sbjct: 60  VKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLL 119

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
            LG    GL              GL     T L            +   +A++  Y+  G
Sbjct: 120 SLGLKTCGL--------------GLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIG 165

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            + ++ ++F+ MP RN  TW A+I    R G   A +   + M +S+   +       L 
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 249 SC--EGMLENMLA-HALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFER 302
           +    G L +  + H   ++ GF++ + +    T  Y      D+G           F +
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLH--------TFRK 277

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +   DVVSWT ++ AY   G      + F RM  S   P+E TF  V+S C++   ++ G
Sbjct: 278 MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWG 337

Query: 363 RK 364
            +
Sbjct: 338 EQ 339



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 6/235 (2%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
           D+   N  +   V   ++  A +LF+ +PQR+  +W  +I  Y  +     A++L + M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            QS    +    +  L +C   L  +    L    GF  +  L           D   ++
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLH---GFSVKXGLVNSVFVGSALLDMYMKI 164

Query: 292 -DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  +   F+ +  ++ V+WTA+I      G+       F+ M +S  + D   +   L
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
              + +G +  GR + +  +   GF   +   + L  +  + G++   +    KM
Sbjct: 225 KASADSGALNHGR-SIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKM 278


>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
 gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
          Length = 581

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 179/329 (54%), Gaps = 24/329 (7%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V+W  M+   V  G +  A ELF+ MP+RN+ +WNAM+  Y + G    A+++ + M 
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229

Query: 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTY-------KCTCHY 282
                 N     + + +C G   +      H    R G E +  L         KC C  
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGC-- 287

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V  A   FE L A+ + SW  MI  ++ HG G     LF  M + G  PD
Sbjct: 288 ----------VEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPD 337

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           ++T V VL+ C+HAG+V +GR  FN +S+ YG  P+ EHY C+ D+  RAGQ++EA +V+
Sbjct: 338 DVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVI 397

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             M P E D  VLGAL GA ++HGDV + + IG R+IEL P +SG YVL AN+ A  G W
Sbjct: 398 QDM-PMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRW 456

Query: 463 DEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           ++ A+VR+ M ER V K A  S IEV+G+
Sbjct: 457 EDVARVRRLMDERNVSKEAGRSVIEVQGE 485



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +FR       ++V+ + M+ G VK GRVD+AR++FD + E N+ SW +++SGY K  
Sbjct: 157 ASRVFRGGGGDALDVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTG 216

Query: 104 QVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTK 160
           +  +   +FD M  +    N     T V+ C   G +A+  EV  W    +G+E +   K
Sbjct: 217 RFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREVHRWVER-SGIEMD--DK 273

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           LA                A++  Y   G + +A  +F  +P R + +WN MI  +A +G 
Sbjct: 274 LA---------------TAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGR 318

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              A+ L  LM +    P++ T  ++LT+C
Sbjct: 319 GEDALNLFGLMEREGVAPDDVTLVNVLTAC 348


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 157/550 (28%), Positives = 258/550 (46%), Gaps = 71/550 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G++  + K+FDEM   + V+  ++IT  +R        A F  M  S+            
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 56  -------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     N    +++   Y K G++D     F ++   +V 
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SWT++++ Y +  + D G + F RM     + N  +++ V+  CA+   +   E +    
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +C G   NA++               VA N+++T Y   G +A  S++F  M  R++ TW
Sbjct: 345 LCVGF-VNALS---------------VA-NSIMTLYSKCGELASVSKVFCSMKFRDIITW 387

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIR 265
           + +I  Y++ G    A + L+ M      PNE    S+L+ C  M    +    HA  + 
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +G EQ TS+     C  +   +     +  A   F      D++SWTAMI  Y+ HGH  
Sbjct: 448 VGLEQ-TSMV----CSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQ 502

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF  + K G +PD +TF+GVL+ CSHAG+V+ G   FN MS+ Y   P  EHY C+
Sbjct: 503 EAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
            D+L RAG++ +A  ++  MP  + D VV   LL ACR+HGDV         +++L P+ 
Sbjct: 563 IDLLCRAGRLHDAETLIRSMPI-QWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNC 621

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMR 499
           +G ++  AN+ AA+G+W E A +R  M+ + V K   +S ++VK      ++     P  
Sbjct: 622 AGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQG 681

Query: 500 EMGYVVLKEV 509
           E  Y +L+E+
Sbjct: 682 EDIYNILEEL 691



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 205/500 (41%), Gaps = 75/500 (15%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQ---------- 55
           T  +K+A  LFD++ Q D VS  ++I+ ++ + D  +A  LF  M  +S+          
Sbjct: 62  TNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSL 121

Query: 56  ---------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                       ++   SA++D Y+K G +  + KVFDE+   N
Sbjct: 122 GLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRN 181

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLIAKLEVISW 146
             +WT++I+G  +A   + G   F  M        S+   +     A +G +     I  
Sbjct: 182 AVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHT 241

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
            T+  G + N+                    N++ T Y   G +      F  M   +V 
Sbjct: 242 QTLKKGFDENSFVA-----------------NSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML-----ENMLAHA 261
           +W  ++  Y + G E   ++    M  S  +PNE T +++++ C         E + AH 
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           L +  GF    S+       Y         ++ S    F  ++ +D+++W+ +I AYS  
Sbjct: 345 LCV--GFVNALSVANSIMTLYSKCG-----ELASVSKVFCSMKFRDIITWSTIIAAYSQV 397

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G+G + F   +RM   G KP+E     VLS C    ++E+G K  +    + G +  +  
Sbjct: 398 GYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG-KQLHAHVLSVGLEQTSMV 456

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--I 439
            S L  +  + G + EA ++   M   + D +   A++     HG  + A  + E +  +
Sbjct: 457 CSALIIMYAKCGSIAEASKIF--MDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKV 514

Query: 440 ELQPSS-SGAYVLSANVHAA 458
            L+P S +   VL+A  HA 
Sbjct: 515 GLRPDSVTFIGVLTACSHAG 534



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 69  VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           VK   + +AR +FD++ + +  SWT++ISGY  +    E  RLF +M L+ +  +    +
Sbjct: 60  VKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLL 119

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
            LG    GL   L  +  T +  G   +  T L    FV          +A++  Y+  G
Sbjct: 120 SLGLKTCGL--GLNYLYGTNL-HGF--SVKTGLVNSVFVG---------SALLDMYMKIG 165

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
            + ++ ++F+ MP RN  TW A+I    R G   A +   + M +S+   +       L 
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 249 SC--EGMLENMLA-HALAIRLGFEQETSLTYKCTCHYV---FWDWGFQLDVNSARLAFER 302
           +    G L +  + H   ++ GF++ + +    T  Y      D+G           F +
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLH--------TFRK 277

Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
           +   DVVSWT ++ AY   G      + F RM  S   P+E TF  V+S C++   ++ G
Sbjct: 278 MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWG 337

Query: 363 RK 364
            +
Sbjct: 338 EQ 339



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 6/235 (2%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
           D+   N  +   V   ++  A +LF+ +PQR+  +W  +I  Y  +     A++L + M 
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            QS    +    +  L +C   L  +    L    GF  +T L           D   ++
Sbjct: 108 LQSELRIDPFLLSLGLKTCGLGLNYLYGTNLH---GFSVKTGLVNSVFVGSALLDMYMKI 164

Query: 292 -DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            ++  +   F+ +  ++ V+WTA+I      G+       F+ M +S  + D   +   L
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
              + +G +  GR + +  +   GF   +   + L  +  + G++   +    KM
Sbjct: 225 KASADSGALNHGR-SIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKM 278


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 244/494 (49%), Gaps = 30/494 (6%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           K+ +E   PD  +    I   L   ++ K   L       + ++   SA+++ Y+K G +
Sbjct: 49  KMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFKFG-LELDVFIGSALVNCYLKFGLM 107

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
           + A+  F+E+   +V  W ++++GY +  Q +     F RM    ++VV     V G   
Sbjct: 108 EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM--NDESVVPSRFTVTG--- 162

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQA 193
                   ++S   +   L      ++   + ++M  +  +   N++I  Y     +  A
Sbjct: 163 --------ILSVFAVMGDLNNG---RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDA 211

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
            E+F +M ++++++WN++   + + G     ++LL+ M  +   P+  T T++L +C   
Sbjct: 212 LEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHL 271

Query: 252 -GMLENMLAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
             ++     H   I  G  ++      +  K     ++   G   D   A L FER+  K
Sbjct: 272 AALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD---AHLVFERMXNK 328

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           DV SW  MI+ Y  HG+G +   +F+RM +   KPDE+TFVGVLS CSHAG V +GR   
Sbjct: 329 DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL 388

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             M   Y   P  EHY+C+ D+L RAGQ+ EA  +   MP  E + VV  ALL ACRLH 
Sbjct: 389 AQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI-EANPVVWRALLAACRLHK 447

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQI 485
              +A+   +R+ EL+P   G+YVL +NV+ A G ++E  +VR  M ++ V+K    S I
Sbjct: 448 HAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWI 507

Query: 486 EVKGKDHTLLAPMR 499
           E+K   H  ++  R
Sbjct: 508 ELKNGVHVFVSADR 521



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 45/315 (14%)

Query: 68  YVKAGRVDEARKVF-DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
           Y K  +++ A  +F D  +E NV+++ ++ISG+      +EG   + +M       V   
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR---NEGVMPD 58

Query: 127 TVVLGCAHNGLIAKLEV--ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
                CA    +  LE+  I       GLE                  D+   +A++  Y
Sbjct: 59  KFTFPCAIKACLDVLEIKKIHGLLFKFGLEL-----------------DVFIGSALVNCY 101

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
           +  G M  A   F  +P R+V  WNAM++ YA+ G     ++    M     +P+  T T
Sbjct: 102 LKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVT 161

Query: 245 SILT--SCEGMLEN-MLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVN 294
            IL+  +  G L N  + H  A+++G++   +++        KC C            + 
Sbjct: 162 GILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC------------IE 209

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   FE +  KD+ SW ++   +   G      RL  RML +G +PD +T   VL  CS
Sbjct: 210 DALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACS 269

Query: 355 HAGLVEKGRKTFNLM 369
           H   +  GR+    M
Sbjct: 270 HLAALMHGREIHGYM 284


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 250/496 (50%), Gaps = 41/496 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----RNIVAES 62
           T ++    KLFD + +P+      +I  + R+        +F  M   +    + ++   
Sbjct: 77  TRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSV 136

Query: 63  AMIDGYV---KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
               G+V   + G++  +  +   ++E +V   T+LI  Y + R V++ R++FD M  + 
Sbjct: 137 LRACGHVFDLQTGKILHS-VILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGM--QE 193

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K++V+   +VLG A NG   +  ++        +E+  M  +        PN  +V WN 
Sbjct: 194 KDLVALNAMVLGYAQNGFAKEGFLL--------VEQMQMLDIK-------PN--LVTWNT 236

Query: 180 MITAYVDAGNMAQASELFNLMP----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +I+ +  AG+     ELF LM     + +V +W ++I R+ +N    AA      M Q  
Sbjct: 237 LISGFAQAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHG 296

Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             PN  T +S+L +C  +         H  A  +G E++  +       Y     G    
Sbjct: 297 AYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYS--KCGL--- 351

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLS 351
           ++ AR+ F ++  +  V+W +MI  Y+NHG+  +   LF +M K+   K D ++F  VL+
Sbjct: 352 ISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLT 411

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSH  LVE G+  F LM   Y   PR EHY+C+ D+L RAG++ EA  ++  MP  E D
Sbjct: 412 ACSHGRLVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPV-EPD 470

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V GALLGACR HG++ +A+     L EL+P ++G  +L +N++A  G W+  A+++  
Sbjct: 471 LFVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAGSWENVAKLKMG 530

Query: 472 MERRVKKVASFSQIEV 487
             +R++K +++S I++
Sbjct: 531 KRKRLRKFSAYSWIQL 546



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 116/255 (45%), Gaps = 11/255 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I+ Y +   ++   +LF+ +P+ N +    +I  Y+R+G     + + + M   R  PN
Sbjct: 70  LISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRPN 129

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           +    S+L +C  + +     + H++ +R  FE +  +       Y          V  A
Sbjct: 130 KFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCR-----HVEKA 184

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ ++ KD+V+  AM+L Y+ +G   + F L  +M     KP+ +T+  ++S  + A
Sbjct: 185 RKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQA 244

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER--DHVV 414
           G     ++ F LMS  +GF+P    ++ +     +    + A     +M  H    +   
Sbjct: 245 GDKVMVQELFGLMS-MHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSAT 303

Query: 415 LGALLGACRLHGDVR 429
           + +LL AC    +VR
Sbjct: 304 ISSLLPACASLANVR 318


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 243/501 (48%), Gaps = 44/501 (8%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
           K+ +E   PD  +    I   L   ++ K   L       + ++   SA+++ Y+K G +
Sbjct: 129 KMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFKF-GLELDVFIGSALVNCYLKFGLM 187

Query: 75  DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTV 128
           + A+  F+E+   +V  W ++++GY +  Q +     F RM      P +   V    +V
Sbjct: 188 EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRF-TVTGXLSV 246

Query: 129 --VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
             V+G  +NG      +I    M  G +                   +   N++I  Y  
Sbjct: 247 FAVMGDLNNG-----RIIHGFAMKMGYDSG-----------------VAVSNSLIDMYGK 284

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
              +  A E+F +M ++++++WN+++  + + G     ++LL+ M  +   P+  T T++
Sbjct: 285 CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV 344

Query: 247 LTSCE---GMLENMLAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           L +C     ++     H   I  G  ++      +  K     ++   G   D   A L 
Sbjct: 345 LPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD---AHLV 401

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           FER+  KDV SW  MI+ Y  HG+G +   +F+RM +   KPDE+TFVGVLS CSHAG V
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            +GR     M   Y   P  EHY+C+ D+L RAGQ+ EA  +   MP  E + VV  ALL
Sbjct: 462 SQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI-EANPVVWRALL 520

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKK 478
            ACRLH    +A+   +R+ EL+P   G+YVL +NV+ A G ++E  +VR  M ++ V+K
Sbjct: 521 AACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 580

Query: 479 VASFSQIEVKGKDHTLLAPMR 499
               S IE+K   H  ++  R
Sbjct: 581 TPGCSWIELKNGVHVFVSADR 601



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 124/300 (41%), Gaps = 44/300 (14%)

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
           D  +E NV+++ ++ISG+      +EG   + +M       V        CA    +  L
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKM---RNEGVMPDKFTFPCAIKACLDVL 153

Query: 142 EV--ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
           E+  I       GLE                  D+   +A++  Y+  G M  A   F  
Sbjct: 154 EIKKIHGLLFKFGLEL-----------------DVFIGSALVNCYLKFGLMEHAQVAFEE 196

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT--SCEGMLEN- 256
           +P R+V  WNAM++ YA+ G     ++    M     +P+  T T  L+  +  G L N 
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNG 256

Query: 257 MLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            + H  A+++G++   +++        KC C            +  A   FE +  KD+ 
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC------------IEDALEIFEMMREKDIF 304

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW +++  +   G      RL  RML +G +PD +T   VL  CSH   +  GR+    M
Sbjct: 305 SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYM 364


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 251/502 (50%), Gaps = 40/502 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF-- 81
           D V  +S++ ++++   L  A  +F  +P  Q  +V  SA+I  + + GRV E +++F  
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLP--QPGVVTSSALISRFARKGRVKETKELFYQ 165

Query: 82  --DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHN--- 135
             D   E N+ SW  +ISG+ ++    +   +F  M L+ LK   +  + VL    +   
Sbjct: 166 TRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDM 225

Query: 136 ---GLIAKLEVISWTTMCTGLERNAMTKLAREY------------FVQMPNKDIVAWNAM 180
              G+     VI       G ++  ++ L   Y            F +M   D+ A NA+
Sbjct: 226 PLMGIQIHCYVIKQGL---GPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNAL 282

Query: 181 ITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +T     G +  A E+F        NV +W +MI   ++NG +  A++L   M      P
Sbjct: 283 VTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKP 342

Query: 239 NETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           N  T   +L +C     +L    AH  ++R G   +  +       Y     G  L   +
Sbjct: 343 NSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYA--KCGRML---A 397

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           +RL F+ +  +++VSW +++  Y+ HG  F+   +F  M + G KPD ++F  VLS C+ 
Sbjct: 398 SRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQ 457

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            GL E+G   F+ MSR +G + R EHYSC+  +L R+G+++EA  ++ +M P E D  V 
Sbjct: 458 GGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQM-PFEPDSCVW 516

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           GALL +CR+H  V + +   +R+ EL+P + G Y+L +N++A++  W E   VR  M  R
Sbjct: 517 GALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSR 576

Query: 476 -VKKVASFSQIEVKGKDHTLLA 496
            +KK   +S IE+K K H LLA
Sbjct: 577 GLKKNPGYSWIEIKNKVHMLLA 598



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 28/275 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
           S F  +G   +A  +F  M     +PD  S +S++   + + D+P            Q  
Sbjct: 183 SGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPA-VGDLDMPLMGIQIHCYVIKQGL 241

Query: 56  -RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             +    SA+ID Y K     E   VF+E+ E +V +  +L++G  +   VD    +F +
Sbjct: 242 GPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQ 301

Query: 115 MPLKLKNVVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT-------------- 159
                 NVVSWT+++  C+ NG  +  LE+     +  G++ N++T              
Sbjct: 302 FKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQI-EGVKPNSVTIPCLLPACGNIAAL 360

Query: 160 ---KLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
              K A  + ++     D+   +A+I  Y   G M  +   F++MP RN+ +WN+++  Y
Sbjct: 361 LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGY 420

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A +G    A+ +  LM +    P+  + T +L++C
Sbjct: 421 AMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSAC 455



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 35/241 (14%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDL--PKAEALFRAMPESQRNIVA 60
            GK  EA +LF EM     +P+ V+   ++        L   KA   F        ++  
Sbjct: 322 NGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYV 381

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL--K 118
            SA+ID Y K GR+  +R  FD +   N+ SW SL++GY    +  E   +F+ M    +
Sbjct: 382 GSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ 441

Query: 119 LKNVVSWTTVVLGCAHNGLI-----------------AKLEVISWTTMCTGLERNAMTKL 161
             + VS+T V+  C   GL                  A++E   ++ M T L R+   + 
Sbjct: 442 KPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARME--HYSCMVTLLGRSGRLEE 499

Query: 162 AREYFVQMP-NKDIVAWNAMITAY-----VDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           A     QMP   D   W A++++      VD G +A A  +F L P RN   +  + + Y
Sbjct: 500 AYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA-AKRVFELEP-RNPGNYILLSNIY 557

Query: 216 A 216
           A
Sbjct: 558 A 558


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 230/458 (50%), Gaps = 43/458 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++++D Y + G V+   +VF+E+ E +  SW  +ISGY + ++ +E   ++ RM ++   
Sbjct: 147 NSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNE 206

Query: 122 VVSWTTVVLGCAHNGLIAKLEV-------ISWTTMCTGLERNAM---------TKLAREY 165
             +  TVV   +   ++  LE+       I+     T +  NA+           +ARE 
Sbjct: 207 KPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVSVAREI 266

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F  M  K++  W +M+T YV  G + QA  LF   P R+V  W AMI+ Y +      A+
Sbjct: 267 FDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAI 326

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCE--GMLE------NMLAHALAIRLGFEQETSLT-- 275
            L   M      P++    ++LT C   G LE      N +     I++     T+L   
Sbjct: 327 ALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDEN-RIKMDAVVSTALIEM 385

Query: 276 -YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             KC C            +  +   F  L+  D  SWT++I   + +G   +   LF  M
Sbjct: 386 YAKCGC------------IEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAM 433

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
              G KPD+ITFV VLS C HAGLVE+GRK F+ MS  Y  +P  EHY C  D+L RAG 
Sbjct: 434 QTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGL 493

Query: 395 VKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           ++EA  +V K+P    + +V   GALL ACR +G++ M + +   L +++ S S  + L 
Sbjct: 494 LQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLL 553

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
           A+++A+   W++  +VR KM +  +KKV  +S IEV G
Sbjct: 554 ASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 21/228 (9%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P+   +++ ++ +   +  A  +F AM    +N+   ++M+ GYV  G++D+AR +F+  
Sbjct: 244 PIMGNALLDMYCKCGCVSVAREIFDAMI--VKNVNCWTSMVTGYVICGQLDQARYLFERS 301

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL--GCAHNGLIAKLE 142
              +V  WT++I+GY +    ++   LF  M ++      +  V L  GCA  G    LE
Sbjct: 302 PSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLG---ALE 358

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
              W        R  M              D V   A+I  Y   G + ++ E+FN +  
Sbjct: 359 QGKWIHNYIDENRIKM--------------DAVVSTALIEMYAKCGCIEKSLEIFNGLKD 404

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +  +W ++I   A NG    A++L   M      P++ T  ++L++C
Sbjct: 405 MDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSAC 452



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 16/177 (9%)

Query: 242 TCTSILTSCEGM--LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           T  S+L SC+ M  L+ + AH      G +Q+  +  K     +    G   D N A   
Sbjct: 10  TYISLLKSCKSMSQLKQIQAHIFC--FGLQQDRDILNKLMAFSMDSSLG---DFNYANRI 64

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  +    +  +  MI A+   G       LF ++ + G  PD  T+  VL      G V
Sbjct: 65  FNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEV 124

Query: 360 EKGRKTFNLMSR-AYGFKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPPHERDHV 413
            +G K    + +    F P    Y C  L D+    G V+   +V  +MP  ERD V
Sbjct: 125 REGEKIHAFVVKTGLEFDP----YVCNSLMDMYAELGLVEGFTQVFEEMP--ERDAV 175


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 214/415 (51%), Gaps = 36/415 (8%)

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           + F   ++ +++  T+LIS Y +       RR+FD M                       
Sbjct: 128 QAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEM----------------------- 164

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
           ++  V++W  + T   R    + A++ F  MP +++ +WN M+  Y  AG +  A  +F 
Sbjct: 165 SEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFY 224

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE- 255
            MP R+  +W+ MI  +A NG    A      + +     NE + T +L++C   G  E 
Sbjct: 225 EMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEF 284

Query: 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLE-AKDVVSWTA 313
             + H      GF ++    Y  + +    D +    +V  ARL F+ +  A+ +VSWT+
Sbjct: 285 GKILH------GFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTS 338

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I   + HG G +  +LF  M +SG +PD ITF+ +L  CSH+GLVE+G   F+ M   Y
Sbjct: 339 IIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLY 398

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G +P  EHY C+ D+  RA ++++A   + +MP    + ++   LLGAC +HG++ MA+ 
Sbjct: 399 GIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPV-SPNAIIWRTLLGACSIHGNIEMAEL 457

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           +  RL E+ P +SG +VL +NV+A  G+W + + +R+ M E  +KK   +S IE+
Sbjct: 458 VKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEI 512



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 24/259 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S +   G    A ++FDEMS+P+ V+  +++T   R  D+  A+ +F  MP   RN+ + 
Sbjct: 146 SMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMP--VRNLTSW 203

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           + M+ GY KAG +  AR+VF E+   +  SW+++I G+      DE    F  +  +   
Sbjct: 204 NGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIR 263

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N VS T V+  CA  G     +++           +   + A   +V   N      NA
Sbjct: 264 TNEVSLTGVLSACAQAGAFEFGKIL-----------HGFVEKAGFLYVGSVN------NA 306

Query: 180 MITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +I  Y   GN+A A  +F  MP  R++ +W ++I   A +G    A++L + M +S   P
Sbjct: 307 LIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRP 366

Query: 239 NETTCTSILTSC--EGMLE 255
           +  T  S+L +C   G++E
Sbjct: 367 DGITFISLLYACSHSGLVE 385


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/467 (30%), Positives = 229/467 (49%), Gaps = 34/467 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++     +ID Y K G +++AR+V + + E +V SWTS+I+GY +     +    F  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 115 MPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M       + +   + + GCA               M  GL+ +A        +V   + 
Sbjct: 437 MQKCGIWPDNIGLASAISGCA-----------GINAMRQGLQIHA------RIYVSGYSG 479

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+  WNA++  Y   G + +A   F  M  ++  T N ++  +A++G    A+K+   M 
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           QS    N  T  S L++   + E       HA  I+ G   ET +       Y     G 
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY-----GK 594

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                 A++ F  +  ++ VSW  +I + S HG G +   LF +M K G KP+++TF+GV
Sbjct: 595 CGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH GLVE+G   F  MS  YG +PR +HY+C+ DI  RAGQ+  A + + +MP   
Sbjct: 655 LAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI-A 713

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            D +V   LL AC++H ++ + ++  + L+EL+P  S +YVL +N +A   +W    QVR
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVR 773

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           K M +R V+K    S IEVK   H       L P+ E  Y  L  ++
Sbjct: 774 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVIN 820



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 184/430 (42%), Gaps = 43/430 (10%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE----S 62
            G V  A ++F+E+S  D VS  +M++ + +N    +A  L+R M  +   +V      S
Sbjct: 90  NGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA--GVVPTPYVLS 147

Query: 63  AMIDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +++    KA    + R +  + Y+      ++   ++I+ Y +        R+F  MP  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-- 205

Query: 119 LKNVVSWTTVVLG---CAH-------------NGLIAKLEVI-SWTTMCTGL-ERNAMTK 160
            ++ V++ T++ G   C H             +GL      I S    C  L +    T+
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           L    F    + D +   +++  YV  G++  A  +FN   + NV  WN M+  + +   
Sbjct: 266 LHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
              + +L   M  +   PN+ T   IL +C    E  L    H+L+++ GFE +  ++  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y  + W     +  AR   E L+ KDVVSWT+MI  Y  H         F  M K 
Sbjct: 386 LIDMYSKYGW-----LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQV 395
           G  PD I     +S C  AG +   R+   + +R Y  G+      ++ L ++  R G++
Sbjct: 441 GIWPDNIGLASAISGC--AG-INAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRI 497

Query: 396 KEAMRVVSKM 405
           +EA     +M
Sbjct: 498 REAFSSFEEM 507



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 28/354 (7%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V  AR+VF+E+   +  SW +++SGY +    +E   L+ +M    +  V
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH---RAGV 139

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAWNAMIT 182
             T  VL              S  + CT  E  A  +L   + +      +I   NA+IT
Sbjct: 140 VPTPYVLS-------------SVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+   A  +F  MP R+  T+N +I  +A+ G    A+++   M  S   P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 CTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            +S+L +C     + +    H+   + G   +  +       YV        DV +A + 
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-----DVETALVI 301

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F   +  +VV W  M++A+       + F LF +M  +G +P++ T+  +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           + G +  +L S   GF+        L D+  + G +++A RV+  +   E+D V
Sbjct: 362 DLGEQIHSL-SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK--EKDVV 412



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  N +I  Y   G +  A  +F  +  R+  +W AM+  YA+NG    A+ L   M ++
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +P     +S+L+SC   E   +  L HA   + GF  E  +       Y        L
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLY--------L 189

Query: 292 DVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
              S RLA   F  +  +D V++  +I  ++  GHG     +F  M  SG  PD +T   
Sbjct: 190 RCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISS 249

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L+ C+  G ++KG +  + + +A G          L D+  + G V+ A+ + +     
Sbjct: 250 LLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVETALVIFNS---S 305

Query: 409 ERDHVVLGALL 419
           +R +VVL  L+
Sbjct: 306 DRTNVVLWNLM 316


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 246/495 (49%), Gaps = 41/495 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
           TG +  A  +F+ + +   VS   MI+ +    D  KA   F+ M     + + V    M
Sbjct: 299 TGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINM 358

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +   VK+G V   R++FD +   ++ SW +++SGY ++    E   LF +M  + +N   
Sbjct: 359 LTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDR 418

Query: 125 WTTVVL--GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
            T  ++   CA  GL+             G + +A+++    Y       D+   +++I 
Sbjct: 419 TTLAIILSSCAELGLLE-----------AGKQVHAVSQKLGFY------DDVYVASSLIN 461

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G M  +  +F+ + + +V  WN+MI  ++ N  E  A+     M Q  F P+E +
Sbjct: 462 VYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFS 521

Query: 243 CTSILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVN 294
             +I +SC     + +    HA  I+ G     F   + +   C C           DV 
Sbjct: 522 FATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCG----------DVG 571

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           +AR  F+ +  K++V+W  MI  Y+++G+G +   L+  M+ SG KPD+ITFV VL+ CS
Sbjct: 572 AARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACS 631

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           H+ LV++G + F+ M + +   P+ +HY+C+ D L R G+  E   ++  M P++ D +V
Sbjct: 632 HSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTM-PYKDDTIV 690

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
              +L +CR+H +V +A    E L  L P +S  YVL AN++++ G WD+   VR  M +
Sbjct: 691 WEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMSD 750

Query: 474 RRVKKVASFSQIEVK 488
            ++ K   +S+ E K
Sbjct: 751 NQIHKDPGYSRSEFK 765



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 170/395 (43%), Gaps = 48/395 (12%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K  ++  A  VFD+I   N++S+ +++S + K+  +    RLF +MP   +N V
Sbjct: 46  LIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMP--ERNTV 103

Query: 124 SWTTVVLGCAHNGL---------------IAKLEVISWTTM---CTGLERNAMTKLAREY 165
           S  T++     NG                  K   I++ T+   C GL+     +     
Sbjct: 104 SLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGL 163

Query: 166 FVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            +++  + +I   NA++  Y   G    A  +F  + + N  T+  M+   ++       
Sbjct: 164 VLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEG 223

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSC------------EGMLENMLA---HALAIRLGFE 269
           ++L  LM +     +  + ++IL  C             G+  N      H LA++ GFE
Sbjct: 224 LELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFE 283

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
           ++  L     C+ +   +    D++SA   FE L+   VVSW  MI  Y N     +   
Sbjct: 284 RDLHL-----CNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALE 338

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            F RM   G +PD++T++ +L+ C  +G V+ GR+ F+ MS      P    ++ +    
Sbjct: 339 CFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMS-----SPSLISWNAILSGY 393

Query: 390 RRAGQVKEAMRVVSKMPP--HERDHVVLGALLGAC 422
            ++    EA+ +  KM       D   L  +L +C
Sbjct: 394 NQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSC 428



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 59/358 (16%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           NI   +A++  Y K G  ++A +VF+ I E N  ++T+++ G  +  QV EG  LF  M 
Sbjct: 172 NIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLML 231

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT---GLERNAMTKLAREYFVQMP- 170
            K    + VS +T+++ CA          +S+  +C    GL  NA  K      V+   
Sbjct: 232 RKGICVDSVSLSTILVICAKG--------VSFG-VCDDSRGLSTNAQGKQIHTLAVKHGF 282

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
            +D+   N+++  Y   G+M  A  +F  + + +V +WN MI  Y        A++    
Sbjct: 283 ERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQR 342

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           M    + P++ T  ++LT+C             ++ G                       
Sbjct: 343 MQCCGYEPDDVTYINMLTAC-------------VKSG----------------------- 366

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAY---SNHGHGFQVFRLFARMLKSGTKPDEITFV 347
            DV   R  F+ + +  ++SW A++  Y   ++HG   ++FR   +M      PD  T  
Sbjct: 367 -DVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFR---KMQFQWQNPDRTTLA 422

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            +LS C+  GL+E G++  + +S+  GF       S L ++  + G+++ +  V SK+
Sbjct: 423 IILSSCAELGLLEAGKQV-HAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKL 479



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 32/294 (10%)

Query: 138 IAKLEVISWTTMCTGL-----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           I +  + S T +C  L     + N +T  A   F ++P+K+I ++NA+++A+  + N+  
Sbjct: 31  IFRFTLFSDTFLCNHLIDLYSKCNQITS-AHHVFDKIPHKNIFSYNAILSAFCKSNNLQY 89

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCE 251
           A  LF  MP+RN  + N +I    +NG E  A+   +LM       P+  T  ++ ++C 
Sbjct: 90  ACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACG 149

Query: 252 GMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
           G+ +       H L +++GF+    ++    C Y     G   D   A   FE +   + 
Sbjct: 150 GLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYT--KCGLNED---AFRVFEGIVEPNE 204

Query: 309 VSWTAMI--LAYSNH-GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA---GLVEKG 362
           V++T M+  L+ +N    G ++FRL   ML+ G   D ++   +L  C+     G+ +  
Sbjct: 205 VTFTTMMGGLSQTNQVKEGLELFRL---MLRKGICVDSVSLSTILVICAKGVSFGVCDDS 261

Query: 363 R--------KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           R        K  + ++  +GF+      + L D+  + G +  A  V   +  H
Sbjct: 262 RGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKH 315


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 260/524 (49%), Gaps = 49/524 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + EA  LFD+ ++ + VS  +MI        + +A  LFR M   +   V E  +++ 
Sbjct: 183 GYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNI 242

Query: 68  YVKAGRVDEARKVFD----EIYEGNVYS---WTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                 + + R + +     I  G  Y        ++ Y K   +    R+F  M  K  
Sbjct: 243 LPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTV 302

Query: 121 NVVSWTTVVLGCAHNG-------LIAKLE----VISWTTMCTGLERNAMTKLAR-----E 164
           N  SW  ++ GCA NG       L  ++     V  W T+ + L  +A  K  R      
Sbjct: 303 N--SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVH 360

Query: 165 YFVQMPNKDIVAWN--AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            FV     +I ++   ++++ Y+  G  + A  LF+ M +++  +WNAMI  Y++NG   
Sbjct: 361 GFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPE 420

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQET---------S 273
            A+ L   +    F P++    S+L +C        +   A+RLG E             
Sbjct: 421 DALILFRKLVSDGFQPSDIAVVSVLGAC--------SQQSALRLGKETHCYALKALLMED 472

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +   C+   ++   G    +  +R  F+ L+ KD+ SW A+I AY  HG G +   LF R
Sbjct: 473 VFVACSTIDMYAKSGC---IKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFER 529

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M K G  PD  TF+G+L+ CSHAGLVE+G K FN M   +G +P+ EHY+C+ D+L RAG
Sbjct: 530 MRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAG 589

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           ++ +A+R+V +M P + D  V  +LL  CR  G++ +   + E+L+EL+P +   YV  +
Sbjct: 590 RLDDALRLVHEM-PEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLS 648

Query: 454 NVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           N++A  G WD+  +VR+ ++   ++K A  S IE+ GK H+ +A
Sbjct: 649 NLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVA 692



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 196/483 (40%), Gaps = 73/483 (15%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHD------------------LPK 43
           + +G  G V  A K+F  M   + VS  S+I+ F  N                    LP 
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPD 133

Query: 44  AEALFRAMPESQR---------------------NIVAESAMIDGYVKAGRVDEARKVFD 82
              L   +P   R                     ++   ++++D Y K G + EA+ +FD
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           +    N  SW ++I G      + E   LF  M ++    V+  TV+     N L A LE
Sbjct: 194 KNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVL-----NILPACLE 248

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +    ++          K    Y ++   + D +  N  + AY   G +  A  +F  M 
Sbjct: 249 ISQLRSL----------KELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSME 298

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENML 258
            + V +WNA+I   A+NG    A+ L   M  S  +P+  T  S+L +    + +     
Sbjct: 299 TKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKE 358

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            H   +R G E ++ +       Y+        + +SARL F+ +E K  VSW AMI  Y
Sbjct: 359 VHGFVLRHGLEIDSFIGISLLSLYIHCG-----ESSSARLLFDGMEEKSSVSWNAMISGY 413

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           S +G       LF +++  G +P +I  V VL  CS    +  G++T     +A   +  
Sbjct: 414 SQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDV 473

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
               S + D+  ++G +KE+  V   +    +D     A++ A  +HGD       GE  
Sbjct: 474 FVACSTI-DMYAKSGCIKESRSVFDGLK--NKDLASWNAIIAAYGVHGD-------GEES 523

Query: 439 IEL 441
           IEL
Sbjct: 524 IEL 526



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 15/289 (5%)

Query: 150 CTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           CTG     + ++     ++M    D+   NA+I  Y   G +  A ++F+ MP RN+ +W
Sbjct: 41  CTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSW 100

Query: 209 NAMIDRYARNGPEGAAMKLLNLMF--QSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
           N++I  ++ NG       +L  M   +   +P+  T  ++L  C   ++  +    H LA
Sbjct: 101 NSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLA 160

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           ++LG  ++  +       Y    +     +  A++ F++   K+ VSW  MI      G+
Sbjct: 161 VKLGLSEDVRVNNSLVDMYSKCGY-----LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGY 215

Query: 324 GFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
            F+ F LF  M ++   + +E+T + +L  C     + +  K  +  S  +GF+      
Sbjct: 216 IFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL-RSLKELHGYSIRHGFQYDELVA 274

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           +       + G +  A RV   M     +     AL+G C  +GD R A
Sbjct: 275 NGFVAAYAKCGMLICAERVFYSMETKTVNS--WNALIGGCAQNGDPRKA 321



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 129/311 (41%), Gaps = 37/311 (11%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +V+   +LI+ Y K   VD   ++F  MP++  N+VSW +++ G + NG  +K       
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVR--NLVSWNSIISGFSENGF-SKDCFDMLV 121

Query: 148 TMCTGLER---------NAMTKLAREYFVQMP------------NKDIVAWNAMITAYVD 186
            M  G E            +   ARE  VQM             ++D+   N+++  Y  
Sbjct: 122 EMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSK 181

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTS 245
            G + +A  LF+   ++N  +WN MI      G    A  L   M  Q     NE T  +
Sbjct: 182 CGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLN 241

Query: 246 ILTSCEGM-----LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           IL +C  +     L+ +  H  +IR GF+ +  +       Y     G  +    A   F
Sbjct: 242 ILPACLEISQLRSLKEL--HGYSIRHGFQYDELVANGFVAAYA--KCGMLI---CAERVF 294

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
             +E K V SW A+I   + +G   +   L+ +M  SG  PD  T   +L   +H   + 
Sbjct: 295 YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLR 354

Query: 361 KGRKTFNLMSR 371
            G++    + R
Sbjct: 355 YGKEVHGFVLR 365


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 225/436 (51%), Gaps = 30/436 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL---KLK 120
           ++  Y K G  ++A+++FDE+   ++ SW SL+SG      +      F RM     +  
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V+  +VV  CA  G + + + +    +  G+   A                    N++
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVV-----------------NSL 282

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +  AS+LF  MP R++ +WN+M+  +  NG     M L NLM ++   P++
Sbjct: 283 INMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 342

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  ++L +C        A   HA   R GF  +  +       Y          +N++ 
Sbjct: 343 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-----RLNASE 397

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE ++ +D ++WTAM+  Y+ H  G +  +LF  M+K G + D +TF  +LS CSH+G
Sbjct: 398 DIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 457

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G+K F +MS  Y  +PR +HYSC+ D+L R+G++++A  ++  M P E    V GA
Sbjct: 458 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGA 516

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LLGACR++G+V +   + E+L+ L PS    Y++ +N+++A G W   ++VR  M ERR+
Sbjct: 517 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRL 576

Query: 477 KKVASFSQIEVKGKDH 492
            +    S IE   K H
Sbjct: 577 TRNPGCSFIEHGNKIH 592



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 31/276 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT-VFLRNHDLPKAEALFRAMPESQR--NIVAESAM 64
           G  ++A +LFDEM   D VS  S+++ +  R +      A  R   ES R  N V   ++
Sbjct: 188 GYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 247

Query: 65  IDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +      G +DE + +   + +    G      SLI+ Y K   +D   +LF+ MP  ++
Sbjct: 248 VSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP--VR 305

Query: 121 NVVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMC--TGLERNAMTKL 161
           ++VSW ++V+   HNG   K                   +++    C  TGL R A +  
Sbjct: 306 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 365

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A  +     N DI+   A++  Y   G +  + ++F  +  R+   W AM+  YA +   
Sbjct: 366 AYIHRCGF-NADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACG 424

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
             A+KL +LM +     +  T T +L++C   G++E
Sbjct: 425 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 64/299 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           + +G  G +  A++LF+EM     VS  SM+ +   N    K   LF  M  +  N    
Sbjct: 284 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 343

Query: 58  ---------------------------------IVAESAMIDGYVKAGRVDEARKVFDEI 84
                                            I+  +A+++ Y K GR++ +  +F+EI
Sbjct: 344 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 403

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAHNGLIAK-- 140
            + +  +WT++++GY       E  +LFD M  +   V  V++T ++  C+H+GL+ +  
Sbjct: 404 KDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 463

Query: 141 --LEVIS-----------WTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITAYVD 186
              E++S           ++ M   L R+   + A E    MP +     W A++ A   
Sbjct: 464 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 523

Query: 187 AGNMAQ----ASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            GN+      A +L +L P   RN   +  + + Y+  G    A K+  LM + R   N
Sbjct: 524 YGNVELGKEVAEQLLSLDPSDHRN---YIMLSNIYSAAGLWRXASKVRXLMKERRLTRN 579


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/490 (31%), Positives = 242/490 (49%), Gaps = 45/490 (9%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVKAGRVDEA 77
           +PD ++  S++        L    ++    FRA  E   N+   +AM+D Y K G V  A
Sbjct: 240 KPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA--TAMLDTYFKCGSVRSA 297

Query: 78  RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL-----GC 132
           R VF  +   NV SW ++I GY +  + +E    F +M   L   V  T V +      C
Sbjct: 298 RLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKM---LDEGVEPTNVSMMGALHAC 354

Query: 133 AHNGLIAKLEVISWTTMCTGLERN-AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
           A+ G                LER   + +L  E  +     D+   N++I+ Y     + 
Sbjct: 355 ANLG---------------DLERGRYVHRLLDEKKIGF---DVSVMNSLISMYSKCKRVD 396

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A+ +F  +  + V TWNAMI  YA+NG    A+ L   M      P+  T  S++T+  
Sbjct: 397 IAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456

Query: 252 GMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKD 307
            +     A   H LAIR   ++     + CT      D   +   + +AR  F+ ++ + 
Sbjct: 457 DLSVTRQAKWIHGLAIRTLMDKNV---FVCT---ALIDTHAKCGAIQTARKLFDLMQERH 510

Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
           V++W AMI  Y  +GHG +   LF  M     KP+EITF+ V++ CSH+GLVE+G   F 
Sbjct: 511 VITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFE 570

Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            M   YG +P  +HY  + D+L RAG++ +A + +  MP  +    VLGA+LGACR+H +
Sbjct: 571 SMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPV-KPGITVLGAMLGACRIHKN 629

Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
           V + +   + L +L P   G +VL AN++A+   WD+ A+VR  ME++ ++K    S +E
Sbjct: 630 VELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVE 689

Query: 487 VKGKDHTLLA 496
           ++ + HT  +
Sbjct: 690 LRNEVHTFYS 699



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 145/322 (45%), Gaps = 30/322 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
           ++ +I  + K   + EA +VF+ +       + +++ GY K   + +  R ++RM     
Sbjct: 79  QTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEV 138

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           +  V  +T ++     N  + +   I    +  G + N                 + A  
Sbjct: 139 MPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSN-----------------LFAMT 181

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y     +  A ++F  MPQR++ +WN ++  YA+NG    A++++  M ++   P
Sbjct: 182 AVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKP 241

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVN 294
           +  T  S+L +   +    +    H  A R GFE      Y         D  F+   V 
Sbjct: 242 DSITLVSVLPAVADLKALRIGRSIHGYAFRAGFE------YMVNVATAMLDTYFKCGSVR 295

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           SARL F+ + +++VVSW  MI  Y+ +G   + F  F +ML  G +P  ++ +G L  C+
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 355 HAGLVEKGRKTFNLMS-RAYGF 375
           + G +E+GR    L+  +  GF
Sbjct: 356 NLGDLERGRYVHRLLDEKKIGF 377



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 29/301 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + F C G V+ A  +F  MS  + VS  +MI  + +N +  +A A F  M +        
Sbjct: 287 TYFKC-GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 62  SAM--IDGYVKAGRVDEAR---KVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRM 115
           S M  +      G ++  R   ++ DE   G +V    SLIS Y K ++VD    +F   
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGN- 404

Query: 116 PLKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKL 161
            LK K VV+W  ++LG A NG +               K +  +  ++ T L   ++T+ 
Sbjct: 405 -LKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQ 463

Query: 162 AR----EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           A+         + +K++    A+I  +   G +  A +LF+LM +R+V TWNAMID Y  
Sbjct: 464 AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGT 523

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT 275
           NG    A+ L N M      PNE T  S++ +C   G++E  + +  +++  +  E ++ 
Sbjct: 524 NGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMD 583

Query: 276 Y 276
           +
Sbjct: 584 H 584



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 23/236 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I+ +    ++ +A+ +F  +  +    ++ M+  YA+N     A++    M     MP 
Sbjct: 82  LISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPV 141

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGF 289
               T +L      L+       H + I  GF+          +L  KC           
Sbjct: 142 VYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCR---------- 191

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   FER+  +D+VSW  ++  Y+ +G   +  ++  +M ++G KPD IT V V
Sbjct: 192 --QIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSV 249

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           L   +    +  GR       RA GF+      + + D   + G V+ A  V   M
Sbjct: 250 LPAVADLKALRIGRSIHGYAFRA-GFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 227/439 (51%), Gaps = 30/439 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL---KLK 120
           ++  Y K G  ++A+++FDE+   ++ SW SL+SG      +      F RM     +  
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 219

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V+  +VV  CA  G + + + +    +  G+   A                    N++
Sbjct: 220 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-----------------NSL 262

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +  AS+LF  MP R++ +WN+M+  +  NG     M L NLM ++   P++
Sbjct: 263 INMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 322

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  ++L +C        A   HA   R GF  +  +       Y          +N++ 
Sbjct: 323 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-----RLNASE 377

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE ++ +D ++WTAM+  Y+ H  G +  +LF  M+K G + D +TF  +LS CSH+G
Sbjct: 378 DIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 437

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G+K F +MS  Y  +PR +HYSC+ D+L R+G++++A  ++  M P E    V GA
Sbjct: 438 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGA 496

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LLGACR++G+V +   + E+L+ L PS    Y++ +N+++A G W + ++VR  M ERR+
Sbjct: 497 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL 556

Query: 477 KKVASFSQIEVKGKDHTLL 495
            +    S IE   K H  +
Sbjct: 557 TRNPGCSFIEHGNKIHRFV 575



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 31/276 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFL-RNHDLPKAEALFRAMPESQR--NIVAESAM 64
           G  ++A +LFDEM   D VS  S+++    R +      A  R   ES R  N V   ++
Sbjct: 168 GYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 227

Query: 65  IDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +      G +DE + +   + +    G      SLI+ Y K   +D   +LF+ MP  ++
Sbjct: 228 VSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP--VR 285

Query: 121 NVVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMC--TGLERNAMTKL 161
           ++VSW ++V+   HNG   K                   +++    C  TGL R A +  
Sbjct: 286 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 345

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A  +     N DI+   A++  Y   G +  + ++F  +  R+   W AM+  YA +   
Sbjct: 346 AYIHRCGF-NADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 404

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
             A+KL +LM +     +  T T +L++C   G++E
Sbjct: 405 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 440



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 64/299 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           + +G  G +  A++LF+EM     VS  SM+ +   N    K   LF  M  +  N    
Sbjct: 264 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 323

Query: 58  ---------------------------------IVAESAMIDGYVKAGRVDEARKVFDEI 84
                                            I+  +A+++ Y K GR++ +  +F+EI
Sbjct: 324 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 383

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAHNGLIAK-- 140
            + +  +WT++++GY       E  +LFD M  +   V  V++T ++  C+H+GL+ +  
Sbjct: 384 KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 443

Query: 141 --LEVIS-----------WTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITAYVD 186
              E++S           ++ M   L R+   + A E    MP +     W A++ A   
Sbjct: 444 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 503

Query: 187 AGNMAQ----ASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            GN+      A +L +L P   RN   +  + + Y+  G    A K+  LM + R   N
Sbjct: 504 YGNVELGKEVAEQLLSLDPSDHRN---YIMLSNIYSAAGLWRDASKVRALMKERRLTRN 559


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 231/479 (48%), Gaps = 60/479 (12%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFK-ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           A K F ++   N +S+ +L++   +    + +  RLFD MP   +N+VS+ T++   AH+
Sbjct: 94  AVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHH 153

Query: 136 G-------LIAKL---------------EVISWTTMCTGLER------------------ 155
           G       ++A+L                V+S  T C G+                    
Sbjct: 154 GRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEF 213

Query: 156 ---------NAMTKL-----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                    NA +K      AR  F Q+  +D V W +MI+ Y     + +A ++F++MP
Sbjct: 214 TVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMP 273

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            ++   W A+I  + +NG E  A++L   M      P      S L +C  +        
Sbjct: 274 DKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKE 333

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
           L   +      S+ +    H    D   +  D+ +A   F+ +  +D +SW +M+  +S+
Sbjct: 334 LHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSH 393

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F  ML +G +P  +TF+ VL+ CSH+GLV  GR     M   +G +PRAE
Sbjct: 394 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAE 452

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA   +  +P           GALLGACRLHG++ +A+ + E L
Sbjct: 453 HYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFL 512

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             L+P +SG YV+ +N++AA G+WD+  +VR  M E+ +KK  ++S IEV+   H  +A
Sbjct: 513 FRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVA 571



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 27/224 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM++ Y KA RV++AR +FD++   +  +WTS+ISGY + +++ E  ++FD MP
Sbjct: 214 TVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMP 273

Query: 117 LKLKNVVSWTTVVLGCAHNG-----------LIAK------LEVISWTTMCTGLERNAMT 159
              K+ ++WT ++ G   NG           ++AK        ++S    C  L      
Sbjct: 274 --DKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRG 331

Query: 160 K-----LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           K     + R     +P  +I   NA++  Y   G+M  A  +F+ MP+R+  +WN+M+  
Sbjct: 332 KELHCFILRRNIGSVP-FNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTG 390

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN 256
           ++ NG    ++ +   M  +   P   T  ++LT+C   G++ N
Sbjct: 391 FSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSN 434



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 22/196 (11%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +V++A  LFD++S  D V+  SMI+ + +   L +A  +F  MP+  R  +A +A+I G+
Sbjct: 230 RVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDR--IAWTALISGH 287

Query: 69  VKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + G  D A ++F+++    V    +   S +    K   V  G+ L   +  +    V 
Sbjct: 288 EQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVP 347

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           +   +    HN L      +   + C  +    M  +A   F  MP +D ++WN+M+T +
Sbjct: 348 FNIFI----HNAL------VDMYSKCGDM----MAAMA--VFDWMPERDFISWNSMVTGF 391

Query: 185 VDAGNMAQASELFNLM 200
              G   Q+  +F  M
Sbjct: 392 SHNGLGKQSLAIFEEM 407


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 226/436 (51%), Gaps = 30/436 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL---KLK 120
           ++  Y K G  ++A+++FDE+   ++ SW SL+SG      +      F RM     +  
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V+  +VV  CA  G + + + +    +  G+   A                    N++
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKV-----------------VNSL 205

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +  AS+LF  MP R++ +WN+M+  +  NG     M L NLM ++   P++
Sbjct: 206 INMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 265

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T  ++L +C        A   HA   R GF  +  +       Y          +N++ 
Sbjct: 266 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-----RLNASE 320

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             FE ++ +D ++WTAM+  Y+ H  G +  +LF  M+K G + D +TF  +LS CSH+G
Sbjct: 321 DIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 380

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G+K F +MS  Y  +PR +HYSC+ D+L R+G++++A  ++  M P E    V GA
Sbjct: 381 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGA 439

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           LLGACR++G+V +   + E+L+ L PS    Y++ +N+++A G W + ++VR  M ERR+
Sbjct: 440 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL 499

Query: 477 KKVASFSQIEVKGKDH 492
            +    S IE   K H
Sbjct: 500 TRNPGCSFIEHGNKIH 515



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 31/276 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT-VFLRNHDLPKAEALFRAMPESQR--NIVAESAM 64
           G  ++A +LFDEM   D VS  S+++ +  R +      A  R   ES R  N V   ++
Sbjct: 111 GYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSV 170

Query: 65  IDGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +      G +DE + +   + +    G      SLI+ Y K   +D   +LF+ MP  ++
Sbjct: 171 VSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP--VR 228

Query: 121 NVVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMC--TGLERNAMTKL 161
           ++VSW ++V+   HNG   K                   +++    C  TGL R A +  
Sbjct: 229 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIH 288

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           A  +     N DI+   A++  Y   G +  + ++F  +  R+   W AM+  YA +   
Sbjct: 289 AYIHRCGF-NADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 347

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
             A+KL +LM +     +  T T +L++C   G++E
Sbjct: 348 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 383



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 64/299 (21%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           + +G  G +  A++LF+EM     VS  SM+ +   N    K   LF  M  +  N    
Sbjct: 207 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 266

Query: 58  ---------------------------------IVAESAMIDGYVKAGRVDEARKVFDEI 84
                                            I+  +A+++ Y K GR++ +  +F+EI
Sbjct: 267 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 326

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV--VSWTTVVLGCAHNGLIAK-- 140
            + +  +WT++++GY       E  +LFD M  +   V  V++T ++  C+H+GL+ +  
Sbjct: 327 KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 386

Query: 141 --LEVIS-----------WTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITAYVD 186
              E++S           ++ M   L R+   + A E    MP +     W A++ A   
Sbjct: 387 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 446

Query: 187 AGNMAQ----ASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            GN+      A +L +L P   RN   +  + + Y+  G    A K+  LM + R   N
Sbjct: 447 YGNVELGKEVAEQLLSLDPSDHRN---YIMLSNIYSAAGLWRDASKVRALMKERRLTRN 502


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 246/476 (51%), Gaps = 43/476 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +I   SA+I  Y   G++++ARKVFDEI + N+ SWTS+I GY       +   LF  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
           + +   +                +  + ++S  + C+ +    +T+    + ++   ++ 
Sbjct: 168 LLVDENDDDDAM----------FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRG 217

Query: 174 IVAWNAMITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +   N ++ AY     G +A A ++F+ +  ++  ++N+++  YA++G    A ++   +
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277

Query: 232 FQSRFMP-NETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQE-----TSLTYKCTCHY 282
            +++ +  N  T +++L   S  G L      H   IR+G E +     + +   C C  
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V +AR AF+R++ K+V SWTAMI  Y  HGH  +   LF  M+ SG +P+
Sbjct: 338 ----------VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITFV VL+ CSHAGL  +G + FN M   +G +P  EHY C+ D+L RAG +++A  ++
Sbjct: 388 YITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 403 S--KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
              KM P   D ++  +LL ACR+H +V +A+    RL EL  S+ G Y+L ++++A  G
Sbjct: 448 QRMKMKP---DSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            W +  +VR  M+ R + K   FS +E+ G+ H  L      P RE  Y  L E++
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELN 560



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 67/296 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF--------------- 48
           +   GK+++A K+FDE+ + + VS  SMI  +  N +   A +LF               
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180

Query: 49  ------------------RAMPES----------QRNIVAESAMIDGYVKAGR--VDEAR 78
                             + + ES           R +   + ++D Y K G   V  AR
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAH 134
           K+FD+I + +  S+ S++S Y ++   +E   +F R+ +K K    N ++ +TV+L  +H
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL-VKNKVVTFNAITLSTVLLAVSH 299

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           +G +   + I    +  GLE                  D++   ++I  Y   G +  A 
Sbjct: 300 SGALRIGKCIHDQVIRMGLE-----------------DDVIVGTSIIDMYCKCGRVETAR 342

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + F+ M  +NV +W AMI  Y  +G    A++L   M  S   PN  T  S+L +C
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 149/326 (45%), Gaps = 39/326 (11%)

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTG 152
           LF+R   K  +V SW +V+   A +G  A+  ++++++M                  C+ 
Sbjct: 31  LFNRYVDK-TDVFSWNSVIADLARSGDSAE-ALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 153 L-ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           L +  +  +  ++ FV     DI   +A+I  Y   G +  A ++F+ +P+RN+ +W +M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 212 IDRYARNGPEGAAMKLLNLMF------QSRFMPNETTCTSILTSC-----EGMLENMLAH 260
           I  Y  NG    A+ L   +             +     S++++C     +G+ E++  H
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI--H 206

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           +  I+ GF++  S+       Y     G +  V  AR  F+++  KD VS+ +++  Y+ 
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYA---KGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263

Query: 321 HGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            G   + F +F R++K+     + IT   VL   SH+G +  G+   + + R  G +   
Sbjct: 264 SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDV 322

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKM 405
              + + D+  + G+V+ A +   +M
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRM 348



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 18/180 (10%)

Query: 194 SELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           + LFN  + + +V++WN++I   AR+G    A+   + M +    P  ++    + +C  
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 253 MLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           + +       H  A   G++ +  ++      Y          +  AR  F+ +  +++V
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-----KLEDARKVFDEIPKRNIV 143

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF------VGVLSDCSHA---GLVE 360
           SWT+MI  Y  +G+      LF  +L      D+  F      V V+S CS     GL E
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 222/458 (48%), Gaps = 62/458 (13%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKA-RQVDE--------GRRLF--------DR 114
           GRV  A +VF ++ E N++   ++I  Y +  R +D          RR F        DR
Sbjct: 59  GRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDR 118

Query: 115 -------------MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
                        M L L   V    V  GC  N ++    +  +T       R     L
Sbjct: 119 FTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYT-------RAGDLVL 171

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR+ F  M  +D+V+WN +I+A+   G M +A  +FN MP + V +W A++  Y   G  
Sbjct: 172 ARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDF 231

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQET------ 272
             A++   LM    F P++ +  ++L +C   G LE     +A   R    +ET      
Sbjct: 232 SGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNAL 291

Query: 273 -SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
             +  KC C     D   QL        F  +  KDV+SW+ M+   + HG   +  +LF
Sbjct: 292 VEMYAKCGC----IDQALQL--------FNGMAEKDVISWSTMVGGLAAHGRAQEAVQLF 339

Query: 332 ARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
             M + GT KP+ ITFVG+LS CSHAGL+++G   F+ M+  YG +P  EHY C+ D+L 
Sbjct: 340 TEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLC 399

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           R+GQ++  + ++S MP    D  + G++L ACR HGDV  A    ERL+ L+P   G  V
Sbjct: 400 RSGQIQRTLDLISDMPL-PADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLV 458

Query: 451 LSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           + ANV+AA   W E A  RK +  R ++K    S IEV
Sbjct: 459 MLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEV 496



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 25/226 (11%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N + ++++I+ Y +AG +  ARKVFD + E +V SW ++IS + +  Q+ + R +F+ 
Sbjct: 150 ESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNS 209

Query: 115 MPLKLKNVVSWTTVVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTKLA-REYFVQMPNK 172
           MP   K VVSWT +V G  A       +E      M  G E + ++ +A      Q+   
Sbjct: 210 MP--DKTVVSWTALVSGYTAAGDFSGAVEAFRLMQM-EGFEPDDVSIVAVLPACAQLGAL 266

Query: 173 DIVAW-----------------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           ++  W                 NA++  Y   G + QA +LFN M +++V +W+ M+   
Sbjct: 267 ELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGL 326

Query: 216 ARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCE--GMLENML 258
           A +G    A++L   M  Q    PN  T   +L++C   G+L+  L
Sbjct: 327 AAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGL 372



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 31/269 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A K+FD M + D VS  ++I+   R   + KA A+F +MP+  + +V+ +A++ G
Sbjct: 167 GDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPD--KTVVSWTALVSG 224

Query: 68  YVKAGRVDEARKVFD----EIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLK 120
           Y  AG    A + F     E +E +  S  +++    +   ++ GR ++   +R  +  +
Sbjct: 225 YTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRE 284

Query: 121 NVVSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
             V    V +    GC    L     +A+ +VISW+TM  GL  +   + A + F +M  
Sbjct: 285 TYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMER 344

Query: 172 KDIVAWN-----AMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNGPE 221
           +  V  N      +++A   AG + +  + F+ M      +  V  +  ++D   R+G  
Sbjct: 345 QGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQ- 403

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
               + L+L+       +     S+L +C
Sbjct: 404 --IQRTLDLISDMPLPADAKIWGSVLNAC 430



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 23/203 (11%)

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGFQLDVNS 295
           E    + L +C    + +  HA A+RL   Q     T + + C  H           V  
Sbjct: 13  EDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHG---------RVAH 63

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK-------SGTKPDEITFVG 348
           A   F ++   ++    AMI AY+ +        ++ RML+       S T  D  T+  
Sbjct: 64  ATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPF 123

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  C     ++ G++    + R+ G +  A   + L ++  RAG +  A +V   M   
Sbjct: 124 LLKACGGLMALDLGKQVHGHVVRS-GCESNAIVQNSLIEMYTRAGDLVLARKVFDGM--Q 180

Query: 409 ERDHVVLGALLGACRLHGDVRMA 431
           ERD V    ++ A    G +R A
Sbjct: 181 ERDVVSWNTVISAHARLGQMRKA 203


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/468 (30%), Positives = 230/468 (49%), Gaps = 32/468 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   +A+I  Y   G ++ AR +FDE    ++ S+ ++I GY +  Q +    LF  
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202

Query: 115 MPLK--LKNVVSWTTVVLGCA-----------HNGLIAKLEVISWTTMCTG-----LERN 156
           M     L +  ++  +   C+           H  +   L  I    +          + 
Sbjct: 203 MQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC 262

Query: 157 AMTKLAREYFVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
            +  +A   F  M  +K   AW++M+  Y   G +  A +LFN M +R+V +W AMI  Y
Sbjct: 263 GLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY 322

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM----LENMLAHALAIRLGFEQE 271
           ++ G    A++L   M      P+E T  ++L++C  +    L   L H       F Q 
Sbjct: 323 SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQN 382

Query: 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERL--EAKDVVSWTAMILAYSNHGHGFQVFR 329
           T LT      Y          ++SA   F R+    K    + +MI   + HG G     
Sbjct: 383 TILTAAVMDMYAKCG-----SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           +F  ++ +G KPDE+TFVGVL  C H+GL+E+G+K F  M  AYG KP+ EHY C+ D+L
Sbjct: 438 VFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLL 497

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            R G ++EA  +V KM P E + V+  ALL ACR HG+V++ +  G++L+E++      Y
Sbjct: 498 GRYGCLEEAYDLVQKM-PFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARY 556

Query: 450 VLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           VL +N+ A   +W+E  QVRK ME   ++K   +S IE+ G  H  +A
Sbjct: 557 VLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVA 604



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 33/223 (14%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           AE +F  M  S ++  A S+M+ GY + G ++ ARK+F+ ++E +V SWT++ISGY +A 
Sbjct: 268 AERVFSTMGTS-KSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAG 326

Query: 104 QVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
           Q  E   LF  M  L +K + V+   V+  CA  G                        L
Sbjct: 327 QCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF---------------------DL 365

Query: 162 AREYFVQMPNKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQ--RNVWTWNAMIDR 214
            +  + Q     +   N ++TA     Y   G++  A E+F  + +  +  + +N+MI  
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAG 425

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
            A++G    A+ +   +  +   P+E T   +L +C   G++E
Sbjct: 426 LAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 468



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 196 LFNLMPQRNVWTWNAMIDRYAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---E 251
           LF+ +   N++ WN MI  Y+R + P  A +  ++++ +    PN  T   +L SC    
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
            +      H+  I+ GFE +  L  +    +++  +G   ++N AR  F+    +D+VS+
Sbjct: 126 SLEPGHEVHSHIIKHGFESD--LFVRNALIHLYSVFG---NLNLARTLFDESLVRDLVSY 180

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-NLMS 370
             MI  Y+          LF  M  SG  PDE TFV + S CS       G++    +  
Sbjct: 181 NTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
                       S + D+  + G +  A RV S M
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTM 275



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 106/257 (41%), Gaps = 36/257 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
           G++  A KLF+ M + D +S  +MI+ + +     +A  LF+ M     + + V   A++
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG-----YFKARQVDEGRRLFDRMPLKLK 120
               + G  D  ++++ +  E  V++  ++++      Y K   +D    +F R+   +K
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 414

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
               + +++ G A +GL      +    + TGL+                  D V +  +
Sbjct: 415 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLK-----------------PDEVTFVGV 457

Query: 181 ITAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           + A   +G + +  +LF  M       PQ     +  M+D   R G    A  L+  M  
Sbjct: 458 LCACGHSGLIEEGKKLFESMFNAYGIKPQME--HYGCMVDLLGRYGCLEEAYDLVQKM-- 513

Query: 234 SRFMPNETTCTSILTSC 250
             F  N     ++L++C
Sbjct: 514 -PFEANSVIWRALLSAC 529



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           RF+    +   +L SC+   + +  HA  I  G   +     +    +     G +  ++
Sbjct: 4   RFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLL--GSKDGLD 61

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDC 353
            +RL F +++  ++  W  MI  YS   +  +   L+  M+  G   P+  TF  +L+ C
Sbjct: 62  HSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSC 121

Query: 354 SHAGLVEKGRKTFNLMSRAYGFK 376
           +    +E G +  + + + +GF+
Sbjct: 122 ARLSSLEPGHEVHSHIIK-HGFE 143


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 242/503 (48%), Gaps = 48/503 (9%)

Query: 10  VKEATKLFDE---MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA--- 63
           V+E+ K+F E     +PD ++  S++       DL  A+ ++  M  +    V ES    
Sbjct: 289 VEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA--GFVLESTVKN 346

Query: 64  -MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            +ID Y K G +  AR VF+ +   +  SW S+ISGY ++  + E  +LF +M + ++  
Sbjct: 347 ILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF-KMMMIMEEQ 405

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
               T ++  + +  +A L+         GL  N +   +  Y       D+   NA+I 
Sbjct: 406 ADHITYLMLISLSTRLADLK------FGKGLHSNGIK--SGIYI------DLSVSNALID 451

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  + ++FN M   +  TWN +I    R G     +++   M +++ +P+  T
Sbjct: 452 MYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMAT 511

Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLD 292
               L  C  +    L    H   +R G+E E         +  KC C            
Sbjct: 512 FLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGC------------ 559

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           + S+   FER+  +DVV+WT MI AY  +G G +    F  M KSG  PD + F+ ++  
Sbjct: 560 LESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYA 619

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+GLVEKG   F  M   Y   P  EHY+C+ D+L R+ ++ +A   +  MP  E D 
Sbjct: 620 CSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPI-EPDA 678

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            +  ++L ACR  GD+  A+ +  R+IEL P   G  +L++N +AA  +WD+ + +RK +
Sbjct: 679 SIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSV 738

Query: 473 -ERRVKKVASFSQIEVKGKDHTL 494
            ++ +KK   +S IE+  K H  
Sbjct: 739 RDKHIKKNPGYSWIEIGKKVHVF 761



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 188/428 (43%), Gaps = 49/428 (11%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAG 72
           KL +    PD  +  S+I       D    + +++ + E   + ++   +A++D Y + G
Sbjct: 96  KLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMG 155

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW------- 125
            +  AR+VFDE+   ++ SW SLISGY      +E   ++     +L+N  SW       
Sbjct: 156 LLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYH----ELRN--SWIVPDSFT 209

Query: 126 TTVVLGCAHNGLIAKL-EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            + VL    N L+ K  + +   T+ +G+                 N   V  N ++  Y
Sbjct: 210 VSSVLPAFANLLVVKQGQGLHGFTLKSGV-----------------NSVSVVNNGLLAMY 252

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR--NGPEGAAMKLLNLMFQSRFMPNETT 242
           +       A  +F+ M  R+  T+N MI  Y +     E   M L NL    +F P+  T
Sbjct: 253 LKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL---DQFKPDILT 309

Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
            TS+L +C  + +  LA   +   +R GF  E+  T K     V+   G   D+ +AR  
Sbjct: 310 VTSVLCACGHLRDLSLAKYIYNYMLRAGFVLES--TVKNILIDVYAKCG---DMITARDV 364

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F  +E KD VSW ++I  Y   G   +  +LF  M+    + D IT++ ++S  +    +
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADL 424

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           + G+   +   ++ G        + L D+  + G+V +++++ + M     D V    ++
Sbjct: 425 KFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGT--LDTVTWNTVI 481

Query: 420 GACRLHGD 427
            AC   GD
Sbjct: 482 SACVRFGD 489



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 151/364 (41%), Gaps = 31/364 (8%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVI 144
           +G+ +    LI  Y   R       +F R+    KNV  W +++   + NG   K LE  
Sbjct: 36  DGSDFFSGKLIDKYSHFRAPASSLSVFRRVS-PAKNVYIWNSIIRAFSKNGWFPKALEFY 94

Query: 145 ----------------SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDA 187
                           S    C GL    M  L  +  ++M    D+   NA++  Y   
Sbjct: 95  GKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRM 154

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G +++A ++F+ MP R++ +WN++I  Y+ +G    A+++ + +  S  +P+  T +S+L
Sbjct: 155 GLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVL 214

Query: 248 TSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
            +   +L   +    H   ++ G    + +       Y+ +          AR  F+ + 
Sbjct: 215 PAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFS-----RPTDARRVFDEMV 269

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +D V++  MI  Y       +  ++F   L    KPD +T   VL  C H   +   + 
Sbjct: 270 VRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKY 328

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
            +N M RA GF   +   + L D+  + G +  A  V + M    +D V   +++     
Sbjct: 329 IYNYMLRA-GFVLESTVKNILIDVYAKCGDMITARDVFNSMEC--KDTVSWNSIISGYIQ 385

Query: 425 HGDV 428
            GD+
Sbjct: 386 SGDL 389


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 215/427 (50%), Gaps = 52/427 (12%)

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158
           Y KA +VD  R  FD  PL+                       +V     M       + 
Sbjct: 2   YAKAGRVDLARDAFDEAPLR-----------------------DVFLCNVMLAAYVSRSE 38

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
              AR+ F  MP +D+V+WN MI  Y   G +  A E+F+    R+ ++W++MI  YA++
Sbjct: 39  VAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKS 98

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-------GMLENMLAHALAIRLGFEQE 271
                A++L   M  +  +P+  T  S++++C        G   +    +  I L  +  
Sbjct: 99  RRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLG 158

Query: 272 TSLT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
           T+L     KC             D+ SA+  F+R+  KDV +W++MI+  +NHG G +  
Sbjct: 159 TALIDMYAKCG------------DIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESL 206

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF++M+  G KP+ +TFVGVL  C+H GLV +G+K F  M+  +G +P  EHY C+ D+
Sbjct: 207 SLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDL 266

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L R+G V+EA +++  M   E D ++  ALLGACR+H +V +A+    +L  L P   G 
Sbjct: 267 LGRSGHVEEARQLIRSM-TFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGH 325

Query: 449 YVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTL-----LAPMREMG 502
           YVL +N++A    W+  A++RK + R  ++++   S IE   K H       L P  +  
Sbjct: 326 YVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEI 385

Query: 503 YVVLKEV 509
           Y VL+E+
Sbjct: 386 YRVLEEM 392



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 21/249 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+V  A   FDE    D   C  M+  ++   ++ +A  +F  MP   R++V+ + 
Sbjct: 2   YAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMP--MRDLVSWNT 59

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           MI GY   G V  AR++FD   + + +SW+S+IS Y K+R+  E   L+  M     + +
Sbjct: 60  MIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPD 119

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            ++  +VV  C+  G +A            G E +   +  R   +++   D+    A+I
Sbjct: 120 CITLVSVVSACSDLGALA-----------VGAEVHRFVESNR---IEL---DLKLGTALI 162

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++  A  +F+ MP+++V TW++MI   A +G    ++ L + M      PN  
Sbjct: 163 DMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGV 222

Query: 242 TCTSILTSC 250
           T   +L +C
Sbjct: 223 TFVGVLIAC 231



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 149/367 (40%), Gaps = 56/367 (15%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRN 57
           +   G+V  A ++FD     D  S +SMI+ + ++    +A  L+R M      P+    
Sbjct: 64  YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITL 123

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   SA  D    A   +  R V     E ++   T+LI  Y K   ++  +R+FDRMP 
Sbjct: 124 VSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMP- 182

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
             K+V +W+++++G A++GL  +   +    +  G++ N +T      FV          
Sbjct: 183 -EKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVT------FV---------- 225

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRN-----VWTWNAMIDRYARNGPEGAAMKLLNLMF 232
             ++ A    G +++  + F  M + +     V  +  M+D   R+G    A +L+  M 
Sbjct: 226 -GVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSM- 283

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF-------- 284
              F P+     ++L +C       +A     +L       L      HYV         
Sbjct: 284 --TFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRV-----LDPLGDGHYVLLSNIYAQA 336

Query: 285 --WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN----HGHGFQVFRLFARML--- 335
             W+   ++     R   +R+  +  + W   I  + +    H    +++R+   M+   
Sbjct: 337 NSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRL 396

Query: 336 -KSGTKP 341
            ++G KP
Sbjct: 397 KQAGYKP 403


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAMIDGYVKAG 72
           ++  E+  PD  +   +  V ++ HD+     L  F        +    S ++D Y + G
Sbjct: 148 RMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCG 207

Query: 73  RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
            V+ AR+VF  +   ++  W  +IS Y      +E   +F        N++ W       
Sbjct: 208 LVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMF--------NLMRWDGA---- 255

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMA 191
             NG   +    +  ++C  LE     K    + +++  + D++  +A+I  Y    N+ 
Sbjct: 256 --NG--DEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIV 311

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC- 250
            A  LF+ M  RNV  WN +I  Y         MKLL  M +  F P+E T +S ++ C 
Sbjct: 312 DAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCG 371

Query: 251 --EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
               + E M AHA A++  F++  S+       Y          + SA   F      D+
Sbjct: 372 YVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCG-----SITSACKCFRLTREPDL 426

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           VSWT++I AY+ HG   +   +F +ML  G  PD+I+F+GVLS CSH GLV KG   FNL
Sbjct: 427 VSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNL 486

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M+  Y   P + HY+CL D+L R G + EA   +  M P E +   LGA + +C LH ++
Sbjct: 487 MTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSM-PMEAESNTLGAFVASCNLHANI 545

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK-KVASFSQIEV 487
            +A +  E+L  ++P  +  Y + +N++A+   W +  +VR+ M  +   +V   S IE+
Sbjct: 546 GLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEI 605

Query: 488 KGKDHTLLA 496
             + H+ ++
Sbjct: 606 TNQVHSFVS 614



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 185/451 (41%), Gaps = 49/451 (10%)

Query: 10  VKEATKLFDEMSQPDP----VSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESA 63
           ++ +  + DE    DP    + CA+ + V  +   LP+ + L   + +      +  ++ 
Sbjct: 31  IRASVPVPDETHFRDPHTVHLFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQ 90

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR-------LFDRMP 116
           ++  Y+K    D+A K+F+E+   NV SW  LI G       +E           F RM 
Sbjct: 91  ILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRML 150

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV 175
           L+L  VV  +T       NGL           +C       M      + V++  + D  
Sbjct: 151 LEL--VVPDSTTF-----NGLFG---------VCVKFHDIDMGFQLHCFAVKLGLDLDCF 194

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             + ++  Y   G +  A  +F ++  R++  WN MI  YA N     A  + NLM    
Sbjct: 195 VGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDG 254

Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +E T +++L+ C+ +         H   +RL F+ +  +       Y         +
Sbjct: 255 ANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMY-----AKNEN 309

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A   F+ +  ++VV+W  +I+ Y N   G +V +L   ML+ G  PDE+T    +S 
Sbjct: 310 IVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISL 369

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAMRVVSKMPPH 408
           C +   +     T  + + A+  K   + +  +A+ L     + G +  A +        
Sbjct: 370 CGYVSAI-----TETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRL--TR 422

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           E D V   +L+ A   HG  + A  + E+++
Sbjct: 423 EPDLVSWTSLINAYAFHGLAKEATEVFEKML 453


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 231/479 (48%), Gaps = 60/479 (12%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFK-ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
           A K F ++   N +S+ +L++   +    + +  RLFD MP   +N+VS+ T++   AH+
Sbjct: 86  AVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHH 145

Query: 136 G-------LIAKL---------------EVISWTTMCTGLER------------------ 155
           G       ++A+L                V+S  T C G+                    
Sbjct: 146 GRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEF 205

Query: 156 ---------NAMTKL-----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
                    NA +K      AR  F Q+  +D V W +MI+ Y     + +A ++F++MP
Sbjct: 206 TVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMP 265

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            ++   W A+I  + +NG E  A++L   M      P      S L +C  +        
Sbjct: 266 DKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKE 325

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
           L   +      S+ +    H    D   +  D+ +A   F+ +  +D +SW +M+  +S+
Sbjct: 326 LHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSH 385

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F  ML +G +P  +TF+ VL+ CSH+GLV  GR     M   +G +PRAE
Sbjct: 386 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAE 444

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA   +  +P           GALLGACRLHG++ +A+ + E L
Sbjct: 445 HYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFL 504

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             L+P +SG YV+ +N++AA G+WD+  +VR  M E+ +KK  ++S IEV+   H  +A
Sbjct: 505 FRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVA 563



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 27/224 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM++ Y KA RV++AR +FD++   +  +WTS+ISGY + +++ E  ++FD MP
Sbjct: 206 TVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMP 265

Query: 117 LKLKNVVSWTTVVLGCAHNG-----------LIAK------LEVISWTTMCTGLERNAMT 159
              K+ ++WT ++ G   NG           ++AK        ++S    C  L      
Sbjct: 266 --DKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRG 323

Query: 160 K-----LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDR 214
           K     + R     +P  +I   NA++  Y   G+M  A  +F+ MP+R+  +WN+M+  
Sbjct: 324 KELHCFILRRNIGSVP-FNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTG 382

Query: 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN 256
           ++ NG    ++ +   M  +   P   T  ++LT+C   G++ N
Sbjct: 383 FSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSN 426



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 22/196 (11%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
           +V++A  LFD++S  D V+  SMI+ + +   L +A  +F  MP+  R  +A +A+I G+
Sbjct: 222 RVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDR--IAWTALISGH 279

Query: 69  VKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
            + G  D A ++F+++    V    +   S +    K   V  G+ L   +  +    V 
Sbjct: 280 EQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVP 339

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           +   +    HN L      +   + C  +    M  +A   F  MP +D ++WN+M+T +
Sbjct: 340 FNIFI----HNAL------VDMYSKCGDM----MAAMA--VFDWMPERDFISWNSMVTGF 383

Query: 185 VDAGNMAQASELFNLM 200
              G   Q+  +F  M
Sbjct: 384 SHNGLGKQSLAIFEEM 399


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 263/543 (48%), Gaps = 61/543 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++ A KLFD + Q D VS   +I+ +++N  + +AE LFR M  +   I  +S     ++
Sbjct: 210 LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISA--GIKPDSITFASFL 267

Query: 70  KAGRVDEARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                  + K   EI+          +V+  ++LI  YFK R V+  ++  +       +
Sbjct: 268 PCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQK--NLCQSSSFD 325

Query: 122 VVSWTTVVLGCAHNGLIAK-LEVISW-------------TTMCTGLERNAMTKLAREYF- 166
            V  TT++ G   NG   + LE   W             +++       A   L +E   
Sbjct: 326 TVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHG 385

Query: 167 ----VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                ++  K  V  +A++  Y   G +  A  +FN + +++   WN+MI   ++NG  G
Sbjct: 386 SIIKTKLDEKCHVG-SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI----RLGFEQETSLT 275
            A+ L   M       +  + +  L++C  +         H L I    R     E+SL 
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 276 ---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
               KC             ++N +R  F+R++ K+ VSW ++I AY NHG   +   LF 
Sbjct: 505 DMYAKCG------------NLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFH 552

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML++G +PD +TF+G++S C HAG V++G + ++LM+  YG   R EHY+C+AD+  RA
Sbjct: 553 EMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRA 612

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++ EA   ++ M P   D  V G LLGAC +HG+V +A+   + L +L P +SG YVL 
Sbjct: 613 GRLHEAFETINSM-PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLL 671

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVL 506
           ANV A  G+W +  +VR  M ER V+KV  +S IEV    H  +A     P+    Y VL
Sbjct: 672 ANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVL 731

Query: 507 KEV 509
             +
Sbjct: 732 DSL 734



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 129/294 (43%), Gaps = 39/294 (13%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G + +A+ +F  +  G   +W  +I G+    Q +     + +M            
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKM------------ 49

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVD 186
             LG   +    K         C GL+   M K+  E    M  K D+   +++I  Y +
Sbjct: 50  --LGAGVSP--DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAE 105

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G+++ A  LF+ +PQ++   WN M++ Y +NG  G A+K+   M  S   PN  T   +
Sbjct: 106 NGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACV 165

Query: 247 LTSC--EGMLE-NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSA 296
           L+ C  E ML+     H +A+  G E ++       ++  KC C            + +A
Sbjct: 166 LSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQC------------LQAA 213

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           R  F+ L   D+VSW  +I  Y  +G   +   LF  M+ +G KPD ITF   L
Sbjct: 214 RKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 40/382 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   S++I  Y + G + +A+ +FD I + +   W  +++GY K        ++F  
Sbjct: 90  KEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLE 149

Query: 115 M---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           M    +K  N V++  V+  CA   ++     +    +  GLE ++              
Sbjct: 150 MRHSEIK-PNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVA----------- 197

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                 N ++  Y     +  A +LF+ +PQ ++ +WN +I  Y +NG  G A  L   M
Sbjct: 198 ------NTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +   P+  T  S L     +L   L H   I  G+    ++           D  F+ 
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLS--LKHCKEIH-GYIIRHAVVLDVFLKSALIDIYFKC 308

Query: 292 -DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            DV  A+    +  + D V  T MI  Y  +G   +    F  +++   KP  +TF  + 
Sbjct: 309 RDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYG------FKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
              + AGL        NL    +G         +    S + D+  + G++  A RV ++
Sbjct: 369 P--AFAGLA-----ALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 405 MPPHERDHVVLGALLGACRLHG 426
           +   E+D +   +++ +C  +G
Sbjct: 422 IT--EKDAICWNSMITSCSQNG 441



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           YV  G++  A  LF  +       WN MI  +   G    A+     M  +   P++ T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 244 TSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
             ++ +C G+       + H     +G +++  +       Y   + G   D   A+  F
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYA--ENGHLSD---AQYLF 116

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           + +  KD V W  M+  Y  +G      ++F  M  S  KP+ +TF  VLS C+   +++
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176

Query: 361 KGRK 364
            G +
Sbjct: 177 LGTQ 180



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 45/173 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQR---------- 56
           G++  A ++F+ +++ D +   SMIT   +N    +A  LFR M  E  R          
Sbjct: 410 GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGAL 469

Query: 57  --------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++ AES++ID Y K G ++ +R+VFD + E N  
Sbjct: 470 SACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEV 529

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNV-----VSWTTVVLGCAHNGLI 138
           SW S+IS Y     + E   LF  M   L+N      V++  ++  C H G +
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEM---LRNGIQPDHVTFLGIISACGHAGQV 579



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A+  F  L+     +W  MI  ++  G        + +ML +G  PD+ TF  V+  
Sbjct: 8   LKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKA 67

Query: 353 CSHAGLVEKGR---KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           C     V+ G+   +T NLM    G K      S L  +    G + +A  +   +P  +
Sbjct: 68  CCGLKSVKMGKIVHETVNLM----GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP--Q 121

Query: 410 RDHVVLGALLGACRLHGDVRMA--DYIGERLIELQPSS 445
           +D V+   +L     +GD   A   ++  R  E++P+S
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNS 159


>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
 gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
 gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
          Length = 493

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 194/353 (54%), Gaps = 10/353 (2%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +V++WTTM TG       + AR +F  MP K++V+WN M+ AY  AG + +A +LF+ MP
Sbjct: 138 DVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMP 197

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            RN  TW +MI    ++     A+++ + M  S  +PNE    S +++C  +    + H 
Sbjct: 198 SRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQL--RWMEHG 255

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
             +    E+E +            D +G    +  A   F  +  +++ SW +MI   + 
Sbjct: 256 TWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAM 315

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G   Q   LF +M  +G +P++ITF+G+LS CSH+GLV++GR  F  M   +G +P  E
Sbjct: 316 NGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPE 375

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           HY  + D+L R+G V+EA+  V  MP  PH     + GAL GAC++HG+V + + + ++L
Sbjct: 376 HYGLMVDLLGRSGHVREAVDFVKSMPVEPHPG---LWGALAGACKIHGEVELGEEVAKKL 432

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKGKD 491
           IEL+P     Y+L +N++A    WD+ A VR+ ++ R  KV   +   + G D
Sbjct: 433 IELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDR--KVPKGTGNAIVGND 483



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 22/246 (8%)

Query: 10  VKEATKLFDEMSQ--PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           V  A +LF E S+   D V+  +M+T      D+ +A   F AMPE  +N+V+ + M+  
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPE--KNVVSWNTMLGA 179

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y +AG + +ARK+FD +   N  +W S+I+G  ++   +E  R+F  M            
Sbjct: 180 YARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDM------------ 227

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI--VAWNAMITAYV 185
           V  G   N    +  ++S  + CT L           Y  +  N  +  V   A++  Y 
Sbjct: 228 VASGVVPN----EPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYG 283

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G++  A  +F  MP RN+++WN+MI   A NG E  A+ L   M  +   PN+ T   
Sbjct: 284 KCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIG 343

Query: 246 ILTSCE 251
           +L++C 
Sbjct: 344 LLSACS 349


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 243/483 (50%), Gaps = 33/483 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
            +++V  +A+ID + K   V+ AR VFD++   +V SWTS+   Y       +G  LF  
Sbjct: 109 NKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFRE 168

Query: 115 MPLK--LKNVVSWTTVVLGCAH--------NGLIAKLEVISWTTMCTGLERNAMTKL--- 161
           M L     N ++ ++++  CA         +G I + E+     + + L     + L   
Sbjct: 169 MGLNGIRANSLTVSSILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLK 228

Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYA 216
            AR  F  M ++DIV+WN M+TAY       +   LF+ M +     N  +WNA I    
Sbjct: 229 QARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCM 288

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS 273
           +NG    A+ +L  M  S   PN  T  S L  C   E +      H    R  F ++ +
Sbjct: 289 QNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVT 348

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +T      Y         D+  +R  F  +  KDVV+W  MI+A S HG G +   LF +
Sbjct: 349 ITTALVLLYAKCG-----DLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNK 403

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           ML SG +P+ +TF+GVLS CSH+ L ++G   FN MS  +   P A+HYSC+ D+L RAG
Sbjct: 404 MLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAG 463

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           +++EA   + KMP  E      GALLGACR++ +V +      +L E++P ++G YVL +
Sbjct: 464 RLEEAYDFIRKMPI-EPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLS 522

Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           N+     +W E +++RK M ++ + K    S ++VK K ++ +        ++M Y  L 
Sbjct: 523 NILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLD 582

Query: 508 EVD 510
           E+D
Sbjct: 583 EID 585



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 34/272 (12%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           G  ++   LF EM     + + ++ +S++        L +    F    E + N+   SA
Sbjct: 157 GMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILRNEMEGNVYVSSA 216

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLK 120
           +++ Y  +  + +AR VFD +Y  ++ SW  +++ YF  ++ + G  LF +M    +KL 
Sbjct: 217 LVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKL- 275

Query: 121 NVVSWTTVVLGCAHN-------GLIAKLE----------VISWTTMCTGLE-----RNAM 158
           N  SW   + GC  N       G++ K++          ++S    CT LE     +   
Sbjct: 276 NQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIH 335

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
             + R +F++    D+    A++  Y   G++  +  +FN MP+++V  WN MI   + +
Sbjct: 336 GYVFRHWFIE----DVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMH 391

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           G  G ++ L N M  S   PN  T   +L+ C
Sbjct: 392 GKGGESLILFNKMLDSGVEPNSVTFIGVLSGC 423



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 155/403 (38%), Gaps = 67/403 (16%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY----FKARQVDEGRRLFDRMPLKL 119
           +I   + +G +  A  +FD+I E ++ +WT LISG+    F  + +D    L  R     
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           K V+   +V   CA +G +   + I    +  G                  NKD+V  NA
Sbjct: 77  KFVL--LSVAKACAASGDLVVAKKIHDDAIQFGF-----------------NKDLVLGNA 117

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  +     +  A  +F+ M  ++V +W +M   Y   G     + L   M  +    N
Sbjct: 118 LIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRAN 177

Query: 240 ETTCTSILTSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
             T +SIL +C   ++     H   +R   E    ++      Y        L +  ARL
Sbjct: 178 SLTVSSILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMY-----ASSLGLKQARL 232

Query: 299 AFERLEAKDVVSWTAMILAY---SNHGHGFQVFR-------------------------- 329
            F+ +  +D+VSW  M+ AY     +  G  +F                           
Sbjct: 233 VFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQ 292

Query: 330 ------LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
                 +  +M  SG KP+ IT V  L  C++   +  G++    + R + F       +
Sbjct: 293 HELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHW-FIEDVTITT 351

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            L  +  + G ++ +  V + MP   +D V    ++ A  +HG
Sbjct: 352 ALVLLYAKCGDLELSRHVFNTMP--RKDVVAWNTMIMANSMHG 392


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 213/422 (50%), Gaps = 34/422 (8%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E +++  T+LI  Y     V+  R++FD M     N+V+W  V+  C     +A      
Sbjct: 138 ESHLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAVITACFRGNDVAG----- 190

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           ARE F +M  ++  +WN M+  Y+ AG +  A  +F+ MP R+ 
Sbjct: 191 ----------------AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDD 234

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHAL 262
            +W+ MI   A NG    +      + ++   PNE + T +L++C   G  E   + H  
Sbjct: 235 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 294

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD-VVSWTAMILAYSNH 321
             + G+    S+       Y         +V  ARL FE ++ K  +VSWT+MI   + H
Sbjct: 295 VEKAGYSWIVSVNNALIDMYSRCG-----NVPMARLVFEGMQEKRCIVSWTSMIAGLAMH 349

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G G +  RLF  M   G  PD I+F+ +L  CSHAGL+E+G   F+ M R Y  +P  EH
Sbjct: 350 GQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEH 409

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y C+ D+  R+G++++A   + +MP      +V   LLGAC  HG++ +A+ + +RL EL
Sbjct: 410 YGCMVDLYGRSGKLQKAYDFICQMPI-PPTAIVWRTLLGACSSHGNIELAEQVKQRLNEL 468

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
            P++SG  VL +N +A  G+W + A +RK M  +R+KK  ++S +EV    +   A  ++
Sbjct: 469 DPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKK 528

Query: 501 MG 502
            G
Sbjct: 529 KG 530



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 24/257 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G V+ A K+FDEM QP+ V+  ++IT   R +D+  A  +F  M    RN  + + 
Sbjct: 151 YGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKML--VRNHTSWNV 208

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           M+ GY+KAG ++ A+++F E+   +  SW+++I G       +E    F  +       N
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 268

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            VS T V+  C+ +G     +++             + K    + V +        NA+I
Sbjct: 269 EVSLTGVLSACSQSGSFEFGKIL----------HGFVEKAGYSWIVSVN-------NALI 311

Query: 182 TAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
             Y   GN+  A  +F  M + R + +W +MI   A +G    A++L N M      P+ 
Sbjct: 312 DMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDG 371

Query: 241 TTCTSILTSCE--GMLE 255
            +  S+L +C   G++E
Sbjct: 372 ISFISLLHACSHAGLIE 388


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 264/534 (49%), Gaps = 45/534 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA---M 64
           G V+EA  +F  M   D VS  +++   + N    +A  LF     S   ++ ES    +
Sbjct: 206 GLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHD-SRSSITMLTESTYSTV 264

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSW----TSLISGYFKARQVDEGRRLFDRMPLKLK 120
           I+       +  AR++   + +   +S+    T+L+  Y KA Q+D+   +F  M    +
Sbjct: 265 INLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGS-Q 323

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT-----KLAREYFVQMPNKDIV 175
           NVVSWT ++ GC  NG I     +       G+  N +T      ++   F    +  ++
Sbjct: 324 NVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVI 383

Query: 176 AWN---------AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
             N         A++ +Y    +  +A  +F ++ Q++V +W+AM+  YA+ G    A  
Sbjct: 384 KTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATN 443

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
               M      PNE T +S + +C        + A  + LG  Q  +++ K  CH     
Sbjct: 444 AFIKMTMHGLKPNEFTISSAIDACA-------SPAAGVDLG-RQFHAISIKHRCHDALCV 495

Query: 287 -------WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
                  +  +  + +A+  FER   +D++SW +M+  Y+ HG+  +   +F +M   G 
Sbjct: 496 SSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGI 555

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
             D +TF+ V+  C+HAGLVE+G++ F+LM R YG  P  +HY+C+ D+  RAG++ E M
Sbjct: 556 DMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETM 615

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++  M P      +  ALLGACR+H +V +     E+L+ L+P  S  YVL +N+++A 
Sbjct: 616 SLIEGM-PFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAA 674

Query: 460 GEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           G+W E  +VRK M+ ++V+K A  S I++K K H  +A     P+ E  Y  L+
Sbjct: 675 GKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLR 728



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 141/300 (47%), Gaps = 26/300 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   ++++D Y+    V + RKVF+ + + NV +WTSL++GY +A  + +   LF RM 
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            +    N  ++++V+   A  G++   + +   ++  G                     +
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGC-----------------CSTV 192

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+++  Y   G + +A  +F  M  R++ +WN ++     NG +  A++L +    S
Sbjct: 193 FVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSS 252

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             M  E+T ++++  C  +    LA   H+  ++ GF    ++    T     ++   QL
Sbjct: 253 ITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM---TALMDAYNKAGQL 309

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D  +  +      +++VVSWTAMI     +G       LF+RM + G  P+++T+  +L+
Sbjct: 310 D-KALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           HAL +R G +    +    +   ++ +W   LD    R  FE +  ++VV+WT+++  Y 
Sbjct: 78  HALCVRCGHDH-GDIRVGTSLVDMYMNWHSVLD---GRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
             G    V  LF RM   G  P+  TF  VLS  +  G+V+ G+   ++ +++  F   +
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ---HVHAQSIKFGCCS 190

Query: 380 EHYSC--LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             + C  L ++  + G V+EA  V  +M    RD V    L+    L+G
Sbjct: 191 TVFVCNSLMNMYAKCGLVEEARVVFCRM--ETRDMVSWNTLMAGLVLNG 237


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 240/457 (52%), Gaps = 47/457 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+  +SA++D Y K G +  A+ + + + + +V SW SL+ G+ +    +E  RLF  M 
Sbjct: 299 NVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMH 358

Query: 117 LKLKNVVSWT-TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            +   +  +T   VL C   G I   + +    + TG E                N  +V
Sbjct: 359 GRNMKIDDYTFPSVLNCCVVGSINP-KSVHGLIIKTGFE----------------NYKLV 401

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           + NA++  Y   G+M  A  +F  M +++V +W +++  YA+N     ++K+   M  + 
Sbjct: 402 S-NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG 460

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE------------TSLTYKCTCHYV 283
             P++    SIL++C  +   +L     + L F +              ++  KC C   
Sbjct: 461 VNPDQFIVASILSACAEL--TLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGC--- 515

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    ++ A   F  ++ KDV++WTA+I+ Y+ +G G    + +  M+ SGT+PD 
Sbjct: 516 ---------LDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDF 566

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF+G+L  CSHAGLV++GRK F  M++ YG KP  EHY+C+ D+  R+G++ EA +++ 
Sbjct: 567 ITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLD 626

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
           +M   + D  V  +LL ACR+H ++ +A+     L EL+P ++  YV+ +N+++A  +W+
Sbjct: 627 QMDV-KPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWN 685

Query: 464 EFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
           + A++RK M+ + + K    S +E+  + +T ++  R
Sbjct: 686 DVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDR 722



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 194/462 (41%), Gaps = 66/462 (14%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           +Q   +G+V +A KLFD+M Q D  S  +MI+ ++    L +A  LF     S ++ +  
Sbjct: 73  NQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC--SCKSSITW 130

Query: 62  SAMIDGYVKAGRVDEARKVFDEI------------------------------------- 84
           S++I GY K G   EA  +F  +                                     
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK 190

Query: 85  --YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
             +EGNV+  T L+  Y K + V E   LF  +    KN V WT +V G A NG   K  
Sbjct: 191 NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 143 VISWTTMCTGLERNAMT----------KLAREYFVQMP--------NKDIVAWNAMITAY 184
                    G+E N  T           LAR +  Q+           ++   +A++  Y
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMY 310

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G++  A  +   M   +V +WN+++  + R+G E  A++L   M       ++ T  
Sbjct: 311 AKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP 370

Query: 245 SILTSC-EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303
           S+L  C  G +     H L I+ GFE      YK   + +   +    D++ A   FE++
Sbjct: 371 SVLNCCVVGSINPKSVHGLIIKTGFEN-----YKLVSNALVDMYAKTGDMDCAYTVFEKM 425

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
             KDV+SWT+++  Y+ +    +  ++F  M  +G  PD+     +LS C+   L+E G+
Sbjct: 426 LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGK 485

Query: 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +  +L     G +     Y+ L  +  + G + +A  +   M
Sbjct: 486 QV-HLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 164/401 (40%), Gaps = 51/401 (12%)

Query: 39  HDLPKAEALFRAM----PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
           H+  K  A  R++      S  +I   + +++   K+G+V++ARK+FD++ + + YSW +
Sbjct: 42  HNPCKFMAFLRSIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNT 101

Query: 95  LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT---VVLGCAHNG--LIAKLEVISWTT- 148
           +IS Y    ++ E R LFD    K     S         GC      L   + +  W   
Sbjct: 102 MISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKAS 161

Query: 149 ---------MCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFN 198
                    +C+ L      ++   + V+     ++     ++  Y     +++A  LF 
Sbjct: 162 QFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFK 221

Query: 199 LM--PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
            +   ++N   W AM+  YA+NG    A++    M       N+ T  +ILT+C  +L  
Sbjct: 222 GLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLAR 281

Query: 257 MLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
                 H   ++ GF     +       Y         D+ +A+   E +E  DVVSW +
Sbjct: 282 CFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG-----DLKNAKNMLETMEDDDVVSWNS 336

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC---------SHAGLVEKGRK 364
           +++ +  HG   +  RLF  M     K D+ TF  VL+ C          H  +++ G +
Sbjct: 337 LMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFE 396

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + L+S A            L D+  + G +  A  V  KM
Sbjct: 397 NYKLVSNA------------LVDMYAKTGDMDCAYTVFEKM 425



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 149/349 (42%), Gaps = 31/349 (8%)

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           K F   Y  N+  W + I+     +QV   +  F    L   +        L   H    
Sbjct: 2   KPFHAFYYCNLLPWLNKITDERTVQQVIMHK--FSSKVLSFPHNPCKFMAFLRSIHTTTA 59

Query: 139 AKLEVISWTT-MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
           A  E I  T  +   L ++     AR+ F +MP KD  +WN MI++YV+ G + +A ELF
Sbjct: 60  ASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELF 119

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           +    ++  TW+++I  Y + G +  A  L   M    +  ++ T  S+L  C   G+++
Sbjct: 120 DGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQ 179

Query: 256 N-MLAHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE--A 305
              + H   ++ GFE           +  KC C            V+ A   F+ LE   
Sbjct: 180 TGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKC------------VSEAEFLFKGLEFDR 227

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           K+ V WTAM+  Y+ +G G++    F  M   G + ++ TF  +L+ CS       G + 
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
              + ++ GF       S L D+  + G +K A  ++  M   E D VV
Sbjct: 288 HGFIVKS-GFGSNVYVQSALVDMYAKCGDLKNAKNMLETM---EDDDVV 332



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 119/280 (42%), Gaps = 54/280 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G +K A  + + M   D VS  S++  F+R+    +A  LF+ M                
Sbjct: 314 GDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL 373

Query: 52  ---------PESQRNIVAES----------AMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                    P+S   ++ ++          A++D Y K G +D A  VF+++ E +V SW
Sbjct: 374 NCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISW 433

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW--TTVVLGCAHNGLIAKLEVISWTTMC 150
           TSL++GY +    +E  ++F  M +   N   +   +++  CA   L+   + +    + 
Sbjct: 434 TSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIK 493

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
           +GL  +                    +N+++  Y   G +  A  +F  M  ++V TW A
Sbjct: 494 SGLRWSQSV-----------------YNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTA 536

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           +I  YA+NG    ++K  + M  S   P+  T   +L +C
Sbjct: 537 IIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFAC 576


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 213/422 (50%), Gaps = 34/422 (8%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E +++  T+LI  Y     V+  R++FD M     N+V+W  V+  C     +A      
Sbjct: 130 ESHLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAVITACFRGNDVAG----- 182

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
                           ARE F +M  ++  +WN M+  Y+ AG +  A  +F+ MP R+ 
Sbjct: 183 ----------------AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDD 226

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHAL 262
            +W+ MI   A NG    +      + ++   PNE + T +L++C   G  E   + H  
Sbjct: 227 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 286

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD-VVSWTAMILAYSNH 321
             + G+    S+       Y         +V  ARL FE ++ K  +VSWT+MI   + H
Sbjct: 287 VEKAGYSWIVSVNNALIDMYSRCG-----NVPMARLVFEGMQEKRCIVSWTSMIAGLAMH 341

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G G +  RLF  M   G  PD I+F+ +L  CSHAGL+E+G   F+ M R Y  +P  EH
Sbjct: 342 GQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEH 401

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y C+ D+  R+G++++A   + +MP      +V   LLGAC  HG++ +A+ + +RL EL
Sbjct: 402 YGCMVDLYGRSGKLQKAYDFICQMPI-PPTAIVWRTLLGACSSHGNIELAEQVKQRLNEL 460

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
            P++SG  VL +N +A  G+W + A +RK M  +R+KK  ++S +EV    +   A  ++
Sbjct: 461 DPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKK 520

Query: 501 MG 502
            G
Sbjct: 521 KG 522



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 24/257 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  G V+ A K+FDEM QP+ V+  ++IT   R +D+  A  +F  M    RN  + + 
Sbjct: 143 YGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKML--VRNHTSWNV 200

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           M+ GY+KAG ++ A+++F E+   +  SW+++I G       +E    F  +       N
Sbjct: 201 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 260

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            VS T V+  C+ +G     +++             + K    + V +        NA+I
Sbjct: 261 EVSLTGVLSACSQSGSFEFGKIL----------HGFVEKAGYSWIVSVN-------NALI 303

Query: 182 TAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
             Y   GN+  A  +F  M + R + +W +MI   A +G    A++L N M      P+ 
Sbjct: 304 DMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDG 363

Query: 241 TTCTSILTSCE--GMLE 255
            +  S+L +C   G++E
Sbjct: 364 ISFISLLHACSHAGLIE 380


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/352 (36%), Positives = 192/352 (54%), Gaps = 26/352 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-P 220
           A++ F +MP + +V+  AMIT Y   GN+  A  LF+ M +R++ +WN MID YA++G P
Sbjct: 180 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFP 239

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLGFEQETS 273
             A M    L+ + +  P+E T  + L++C   G LE     ++   +  IRL  +  T 
Sbjct: 240 NDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTG 299

Query: 274 LT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           L     KC              +  A L F     KD+V+W AMI  Y+ HG+     RL
Sbjct: 300 LIDMYSKCG------------SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347

Query: 331 FARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           F  M   +G +P +ITF+G L  C+HAGLV +G + F  M + YG KP+ EHY CL  +L
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            RAGQ+K A   +  M   + D V+  ++LG+C+LHGD  +   I E LI L   +SG Y
Sbjct: 408 GRAGQLKRAYETIKNM-NMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466

Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           VL +N++A+ G+++  A+VR  M E+ + K    S IE++ K H   A  RE
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP     ++ V+ +  D+  A+ +F  MPE  R++V+ +AMI  Y K G V+ AR +FD 
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPE--RSLVSSTAMITCYAKQGNVEAARALFDS 217

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E ++ SW  +I GY +    ++   LF ++  + K      TVV   +    I  LE 
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277

Query: 144 ISW-------------TTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
             W               +CTGL     +    + A   F   P KDIVAWNAMI  Y  
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337

Query: 187 AGNMAQASELFNLM 200
            G    A  LFN M
Sbjct: 338 HGYSQDALRLFNEM 351



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 41/276 (14%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           AY   G +  +  LF+     +++ + A I+  + NG +  A  L   +  S   PNE T
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 243 CTSILTSCEGMLENML-AHALAIRLGFE---------------------------QETSL 274
            +S+L SC      ++  H L   LG +                            E SL
Sbjct: 133 FSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSL 192

Query: 275 ---TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
              T   TC      +  Q +V +AR  F+ +  +D+VSW  MI  Y+ HG       LF
Sbjct: 193 VSSTAMITC------YAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246

Query: 332 ARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
            ++L  G  KPDEIT V  LS CS  G +E GR   ++  ++   +   +  + L D+  
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGR-WIHVFVKSSRIRLNVKVCTGLIDMYS 305

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           + G ++EA+ V +  P   +D V   A++    +HG
Sbjct: 306 KCGSLEEAVLVFNDTP--RKDIVAWNAMIAGYAMHG 339



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F +    D+  +TA I   S +G   Q F L+ ++L S   P+E TF  +L  CS     
Sbjct: 87  FHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----- 141

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
            K  K  +     +G        + L D+  + G V  A +V  +MP  ER  V   A++
Sbjct: 142 TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP--ERSLVSSTAMI 199

Query: 420 GACRLHGDVRMADYIGERLIE 440
                 G+V  A  + + + E
Sbjct: 200 TCYAKQGNVEAARALFDSMCE 220


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 259/548 (47%), Gaps = 69/548 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-EALFRAMPESQRN---------- 57
           ++ +A K+FD M + D VS  ++I  F +N    KA E + R   E QR           
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 58  --------------------------IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                     +   +A+ D Y K G V+ AR +FD + +  V S
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151
           W S++ GY +  + ++   +F++M   L+  +  T V +          +E +       
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKM---LEEGIDPTGVTI----------MEALHACADLG 363

Query: 152 GLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            LER    K   ++  Q+    DI   N++I+ Y     +  AS++FN +  R   +WNA
Sbjct: 364 DLERG---KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG 267
           MI  YA+NG    A+   + M      P+  T  S++ +   +     A   H L IR  
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            ++   +T      Y          ++ AR  F+ +  + V++W AMI  Y  HG G   
Sbjct: 481 LDKNIFVTTALVDMYSKCGA-----IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAA 535

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF +M K   +P++IT++ V+S CSH+GLV++G + F  M + YG +P  +HY  + D
Sbjct: 536 LDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           +L RAG++KEA   +  MP       V GA  GAC++H ++ + +   ++L EL P   G
Sbjct: 596 LLGRAGRIKEAWDFIENMPI-SPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREM 501
            +VL AN++A+  +W + A+VRK ME++ +KK    S +E++ + H+  +     P  + 
Sbjct: 655 YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKR 714

Query: 502 GYVVLKEV 509
            Y  L+E+
Sbjct: 715 IYAFLEEL 722



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 28/295 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V+ A  +FD M Q   VS  SM+  +++N +  KA A+F  M E   +    + M   
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356

Query: 68  YVKAGRVDEAR-----KVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +  A   D  R     K  D++  G ++    SLIS Y K ++VD    +F+   L  + 
Sbjct: 357 HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNN--LNGRT 414

Query: 122 VVSWTTVVLGCAHNGLIA--------------KLEVISWTTMCTGLERNAMTKLAR---- 163
            VSW  ++LG A NG ++              K +  +  ++   L   ++T+ A+    
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
                  +K+I    A++  Y   G +  A +LF+++  R+V TWNAMID Y  +G   A
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTY 276
           A+ L + M +    PN+ T  S++++C   G+++  L H  +++  +  E S+ +
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 48/389 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK-----------ARQV 105
           N+ A + +++ Y K  ++D+A K+FD + E ++ SW ++I+G+ +            R  
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 106 DEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREY 165
           DEG+R          + ++  TV+   A  GL+   + I    +  G             
Sbjct: 241 DEGQR---------PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG------------- 278

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           F ++ N       A+   Y   G++  A  +F+ M Q+ V +WN+M+D Y +NG    A+
Sbjct: 279 FAKLVNIS----TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHY 282
            +   M +    P   T    L +C   G LE     H    +L    + S+       Y
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V+ A   F  L  +  VSW AMIL Y+ +G   +    F+ M   G KPD
Sbjct: 395 SKCK-----RVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPD 449

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             T V V+   +   +    +    L+ R+          + L D+  + G +  A ++ 
Sbjct: 450 SFTMVSVIPALAELSVTRHAKWIHGLIIRSC-LDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMA 431
             +   +R  +   A++     HG  R A
Sbjct: 509 DMIS--DRHVITWNAMIDGYGTHGLGRAA 535



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 140/308 (45%), Gaps = 27/308 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
           ++ ++  + K G ++EA +VF+ I +     + +++ GY K   ++       RM    +
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 120 KNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           K VV ++T ++  C  N  + + + I    +      N                 + A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN-----------------VFAMT 186

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            ++  Y     +  A ++F+ MP+R++ +WN +I  +++NG    A++L+  M      P
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +  T  ++L +   +   M+    H  AIR GF +  +++      Y          V +
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG-----SVET 301

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           ARL F+ ++ K VVSW +M+  Y  +G   +   +F +ML+ G  P  +T +  L  C+ 
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 356 AGLVEKGR 363
            G +E+G+
Sbjct: 362 LGDLERGK 369


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/489 (31%), Positives = 236/489 (48%), Gaps = 36/489 (7%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR-VDEARKVFDEIYEGNVYSWTSLISG 98
           +L +  AL   +  SQ   +    ++   +   R +D + K+   +     ++W +LI  
Sbjct: 28  ELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRA 87

Query: 99  YFKARQVDEGRRLFDRMPLKLKNVVS----------WTTVVLGCAHNGLIAKLEVISWTT 148
           +   +  +    +F +M   L+N VS            T  L     G+   + ++    
Sbjct: 88  FSNTKNPNPSITVFIKM---LQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGH 144

Query: 149 MCTGLERNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
                 +N++  +         AR+ F +MP K++V WNAM+  Y   G++  A E+FNL
Sbjct: 145 EIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNL 204

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
           MP+++V +W+++ID Y +    G AM L   M     M NE T  S L +C  +    L 
Sbjct: 205 MPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHL--GALE 262

Query: 260 HA-LAIRLGFEQETSLTYKCTCHYV--FWDWGFQLDVNSARLAFE--RLEAKDVVSWTAM 314
           H  +  R   E E  LT       V  +   G    ++ A   F    L+  DV+ W A+
Sbjct: 263 HGRMMHRYIVENELPLTIVLQTSLVDMYAKCG---AIHEALTVFRACSLQEADVLIWNAI 319

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I   + HG   +   LF  M   G  PDEIT++ +LS C+H GLVE+    F+ + R +G
Sbjct: 320 IGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCL-RKHG 378

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
             P+ EHY+C+ D L RAGQV EA + + +MP       +LGALL  C  HG + +A  +
Sbjct: 379 MIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSS-MLGALLSGCMKHGKLDIAKVV 437

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHT 493
           G RL+EL P+  G YV  +N++AA   WD+   +R+ MER+ VKK   FS IEV G  H 
Sbjct: 438 GRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHR 497

Query: 494 LLAPMREMG 502
            +A  +  G
Sbjct: 498 FMAHDKTHG 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 29/234 (12%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+I ++    D+  A  +F  MP  ++N+V  +AM+DGY K G ++ AR+VF+ + E +V
Sbjct: 153 SLIHMYASCRDIASARKVFDEMP--RKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDV 210

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW+SLI GY K R   E   LF+RM     + N V+  + +  CAH G           
Sbjct: 211 VSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLG----------- 259

Query: 148 TMCTGLERNAMTKLAREYFV--QMPNKDIVAWNAMITAYVDAGNMAQASELFNL--MPQR 203
                LE     ++   Y V  ++P   IV   +++  Y   G + +A  +F    + + 
Sbjct: 260 ----ALEHG---RMMHRYIVENELP-LTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEA 311

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
           +V  WNA+I   A +G    AM L   M     +P+E T   +L+ C   G++E
Sbjct: 312 DVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVE 365


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 247/506 (48%), Gaps = 29/506 (5%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G + +A ++FD     D VS  +++  ++   D+ +A  +F  MP  +RN  A S+
Sbjct: 148 YSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMP--KRNATAVSS 205

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV- 122
           M+  + + G V+EAR VFDE    ++++WT++IS + +     E   +F  M  ++  V 
Sbjct: 206 MVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVD 265

Query: 123 -VSWTTVVLGCAHNGLIAKLEVISWTTMCTGL-----ERNAMTKL---------AREYFV 167
                +VV  CA + +I   E+     +  GL      +N +  +         AR  F 
Sbjct: 266 EALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFD 325

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
                D  +WN+MI  Y+  G++  A  LF+ MP ++  +W+ MI    +N     A+ +
Sbjct: 326 SGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTV 385

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE---TSLTYKCTCHYVF 284
            + M      P+E T  S++++C  +  + L    ++     Q     +L    +   ++
Sbjct: 386 FDNMRAQGVRPDEVTIVSVISACTNL--SALEKGKSVHDYVRQNKCYITLVLGTSLIDMY 443

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDE 343
              G+   + +A   F  +E K    W A+I+  + +G   +   +F+ M  S T  P+E
Sbjct: 444 MKCGY---LEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNE 500

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           ITF GVLS C HAGLVE+GR  F LM   Y   P   HY C+ D+L RAG VKEA  ++ 
Sbjct: 501 ITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIE 560

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P   D    GALLGAC  HG+  + + +G +L+ L P   G   + +N++A  G W 
Sbjct: 561 SM-PMSPDVPAWGALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQ 619

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVK 488
               +R  M +R V KV+ +S +E+ 
Sbjct: 620 SVNDLRDSMKQRHVPKVSGYSVVEMS 645


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/551 (29%), Positives = 260/551 (47%), Gaps = 68/551 (12%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNH--------------------------D 40
           +G ++ A  LFD++ QPD  +   +I+   ++                            
Sbjct: 24  SGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLS 83

Query: 41  LPKAEALFRAMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           + KA A  R +  ++R            +++  +A+ID Y K    + AR VF+ +   +
Sbjct: 84  VAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRD 143

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPL--KLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SWTS+ S Y     + E    F +M L  +  N V+ ++++  C     +     +  
Sbjct: 144 VISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHG 203

Query: 147 TTMCTGLERNAMT--------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
             +  G+  N                 + A+  F  M  +D V+WN +ITAY       +
Sbjct: 204 FVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEK 263

Query: 193 ASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
              +F  M       N  +WNA+I    +NG    A+++L+ M  S F PN+ T TS+L 
Sbjct: 264 GLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLP 323

Query: 249 SC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C   E +      H    R  F Q+  LT      +++   G   D+  +R  F  +  
Sbjct: 324 ACTNLESLRGGKQIHGYIFRHWFFQD--LTTTTALVFMYAKCG---DLELSRRVFSMMTK 378

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +D VSW  MI+A S HG+G +   LF  M+ SG +P+ +TF GVLS CSH+ LV++G   
Sbjct: 379 RDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLI 438

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F+ MSR +  +P A+H+SC+ D+L RAG+++EA   + KMP  E      GALLG CR++
Sbjct: 439 FDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPI-EPTAGAWGALLGGCRVY 497

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
            +V +      RL E++  + G YVL +N+  +   W E ++ RK M +R V K    S 
Sbjct: 498 KNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSW 557

Query: 485 IEVKGKDHTLL 495
           I+V+ + HT +
Sbjct: 558 IQVRNRVHTFV 568



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 171/435 (39%), Gaps = 65/435 (14%)

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           I  Y  +G +  AR +FD+I + ++ +WT LIS   K  +  E  + ++    + KN V 
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYN--DFRHKNCVE 75

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITA 183
                          KL ++S    C  L      K   E  ++     D++  NA+I  
Sbjct: 76  -------------PDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDM 122

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y        A  +F  MP R+V +W +M   Y   G    A+     M  +   PN  T 
Sbjct: 123 YGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTV 182

Query: 244 TSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
           +SIL +C  + +       H   +R G      ++      Y        L +  A+L F
Sbjct: 183 SSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASC-----LSIRQAQLVF 237

Query: 301 ERLEAKDVVSWTAMILAY-----------------------------------SNHGHGF 325
           + +  +D VSW  +I AY                                     +G   
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   + +RM  SG KP++IT   VL  C++   +  G++    + R + F+      + L
Sbjct: 298 KALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTT-TTAL 356

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQP 443
             +  + G ++ + RV S M   +RD V    ++ A  +HG+   A  +   +++  ++P
Sbjct: 357 VFMYAKCGDLELSRRVFSMMT--KRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRP 414

Query: 444 SS-SGAYVLSANVHA 457
           +S +   VLS   H+
Sbjct: 415 NSVTFTGVLSGCSHS 429


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/472 (30%), Positives = 230/472 (48%), Gaps = 48/472 (10%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGY-FKARQVD---------EGRRLFDRM---PLK 118
           G +  AR +F  I + +++   +LI  Y F    +D         E   +F  +   PL 
Sbjct: 83  GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLL 142

Query: 119 LKNVVSWTTVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           LK      ++ LG A +  + KL    EV     +        + + A   F + P  D 
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
            +WN MI  Y+  G    A  +F  MP R+V +W+ MI+ Y +       + L   M   
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE 262

Query: 235 RFMPNETTCTSILTSCEGM--------LENMLAHA---LAIRLGFEQETSLTYKCTCHYV 283
           +  PNE+   + L++C  +        +E  +      L +RLG      +  KC     
Sbjct: 263 KIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLG-TALIDMYSKCG---- 317

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    V  A   F +++ K+V++W+AMI   + +G G     LF++M   G KP+E
Sbjct: 318 --------SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNE 369

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TF+G+L+ CSH+ LV++G   F+ M+  YG KP A H+ C+ D+  RAG + +A  V+ 
Sbjct: 370 VTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIK 429

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            M P + +  + GALL ACR+HGD  + + +G+RL+EL P+  G YVL +N++AA G WD
Sbjct: 430 SM-PFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWD 488

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
             A++R+ M ER+V K    S I++    H  +A     P  EM Y  L E+
Sbjct: 489 RVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEM 540



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 19/189 (10%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-N 121
           MI GY+K G    AR++F+ + + +V SW+ +I+GY +  +  EG  LF D M  K++ N
Sbjct: 208 MIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPN 267

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                  +  CAH G    +E   W      +ER    K  R          +    A+I
Sbjct: 268 ESVLVNALSACAHLG---AMEQGQW------IERYMERKNVR--------LTVRLGTALI 310

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++ +A E+F+ M ++NV  W+AMI+  A NG    A+ L + M      PNE 
Sbjct: 311 DMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370

Query: 242 TCTSILTSC 250
           T   IL +C
Sbjct: 371 TFIGILNAC 379



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 21/156 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A+ID Y K G V+ A +VF ++ E NV +W+++I+G     Q  +   LF +M ++   
Sbjct: 307 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 366

Query: 120 KNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            N V++  ++  C+H+ L+ +        T   GL+ NA                     
Sbjct: 367 PNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHC----------------- 409

Query: 179 AMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMID 213
            M+  Y  AG + QA  +   MP + N   W A+++
Sbjct: 410 CMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLN 445


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 235/468 (50%), Gaps = 28/468 (5%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++  Y    RV EAR+VFD + E ++ +W  ++  YF  +   E   L ++M     +
Sbjct: 32  TALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVV 91

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM--------------TKLAREY 165
            + V   TV+  C H   +   + I      + +  +A                ++A + 
Sbjct: 92  PDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKI 151

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           +  M  KD+V+  AM+  Y   G +  A  +FN M +++V +W+AMI  YA N      +
Sbjct: 152 YSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVL 211

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCE--GMLENM-LAHALAIRLGFEQETSLTYKCTCHY 282
            L N M      P+E T  S++++C   G L+     H++    GF +  S+     C+ 
Sbjct: 212 NLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSI-----CNA 266

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
           +   +     +  A   F  +  K+V++WT+MI A++ HG G     LF +M   G +P+
Sbjct: 267 LIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPN 326

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            +TF+ +L  C HAGLV +GR  F  M + Y  +P+ EHY C+ D++ RA  ++EA+ ++
Sbjct: 327 GVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLI 386

Query: 403 SKMPPHERDHVVL-GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
             M  H R +V + G+LL AC +HGD+ + ++  ++++EL P+  GAYVL +N+HA  G 
Sbjct: 387 ESM--HIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGN 444

Query: 462 WDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMREMGYVVLKE 508
           W+   ++R  M+   V K   +S +E+    H       +   +VL E
Sbjct: 445 WNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGFQLETHDCAILVLSE 492



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D     A++ AY     +A+A  +F+ MP+R++  W  M+D Y         + LLN 
Sbjct: 25  DEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84

Query: 231 MFQSRFMPNETTCTSILTSC---------------------------EGMLENMLAHALA 263
           M +SR +P++    ++L++C                              L NM A  + 
Sbjct: 85  MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEAKDVVSWTAMILAYSNH 321
           + +  +  + +  K          G+  +  +  AR  F  +  KDVVSW+AMI AY+ +
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
               +V  LF +M   G  PDEIT + V+S C++ G ++K R   +++   +GF      
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGN-HGFYKILSI 263

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
            + L D+  + G +  A+ + + MP   ++ +   +++ A  +HGD
Sbjct: 264 CNALIDMFSKCGSLTLALNMFNAMP--RKNVITWTSMIAAFAMHGD 307



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 21/224 (9%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           +++I ++    D+  A+ ++  M   ++++V+ +AM+ GY K G+++ AR +F+ + E +
Sbjct: 133 SALINMYASCMDMEMADKIYSGM--QRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKD 190

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMP--LKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V SW+++IS Y +  Q  E   LF++M       + ++  +V+  CA+   I  L+   W
Sbjct: 191 VVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACAN---IGSLDKARW 247

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                G   +   K+            +   NA+I  +   G++  A  +FN MP++NV 
Sbjct: 248 IHSIVG--NHGFYKI------------LSICNALIDMFSKCGSLTLALNMFNAMPRKNVI 293

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           TW +MI  +A +G   +A+ L   M      PN  T   +L +C
Sbjct: 294 TWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYAC 337


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 240/470 (51%), Gaps = 28/470 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  + +N D+  A ++F  MP   ++ +  + +I GY KAG VD+AR++FD +     
Sbjct: 159 ALVDFYAKNGDMESAVSVFDEMP--VKDPIPINCLITGYSKAGDVDKARRLFDGMERRTS 216

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW S+I+ Y    +  E   LFDRM  +    N ++ T+V   CA +G           
Sbjct: 217 ASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSG----------- 265

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            + TG       K  R+   +   ++++   A++  YV    +  A   F+ M QR+V  
Sbjct: 266 DLDTG-------KRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVA 318

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W+ MI  YA+NG    +++L   M  +   PNE T   ++++C  +  + L   +     
Sbjct: 319 WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIG---N 375

Query: 268 FEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           + +   L           D   +   V  AR  F R+E K V++W +MI   + +G    
Sbjct: 376 YAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAED 435

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              L+ +M ++G +P+EITFV +L+ C+HAGLV++G   F  M R +   P+ EH +C+ 
Sbjct: 436 AISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIV 495

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L ++G + EA + +  M   E + V+   LL +CR H DV +A     +L+ ++P +S
Sbjct: 496 DLLCKSGGLWEAYKFICDMEV-EPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNS 554

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
             YVL +N++A  G W +  ++R  M  + V+K++++S I++ G+ H  L
Sbjct: 555 SIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFL 604



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 157/354 (44%), Gaps = 47/354 (13%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +V   T +     +N   + A   F +MP KD +  N +IT Y  AG++ +A  LF+ M 
Sbjct: 153 DVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGME 212

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC----------- 250
           +R   +WN+MI  YA  G    A+ L + M      PN  T TS+ + C           
Sbjct: 213 RRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKR 272

Query: 251 ------EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
                 E  L+N++ H   +         +  KC              ++ AR  F+R+ 
Sbjct: 273 VRDLIGEDDLQNVIVHTALME--------MYVKCRA------------IDDARREFDRMS 312

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +DVV+W+ MI  Y+ +G   +   LF RM  +  +P+E+T VGV+S C+  G  E   +
Sbjct: 313 QRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQ 372

Query: 365 TFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
             N         P   +  S L D+  R G V  A  V S+M   ++  +   +++    
Sbjct: 373 IGNYAENQR--LPLTSYLGSALIDMYTRCGHVGRARSVFSRM--EQKGVITWNSMIRGLA 428

Query: 424 LHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGEWDEFAQVRKKMER 474
           ++G    A  + E++ E  +QP+  +   +L+A  HA  G  D+     ++M+R
Sbjct: 429 MNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHA--GLVDQGMAFFEEMKR 480



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 64/312 (20%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
            G ++ A  +FDEM   DP+    +IT + +  D+ KA  LF  M   +R   + ++MI 
Sbjct: 167 NGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGM--ERRTSASWNSMIA 224

Query: 67  GYVKAGRVDEARKVFDE-IYEG-------------------------------------N 88
            Y   G   EA  +FD  + EG                                     N
Sbjct: 225 CYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN 284

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAKL 141
           V   T+L+  Y K R +D+ RR FDRM    ++VV+W+T++ G A NG       L  ++
Sbjct: 285 VIVHTALMEMYVKCRAIDDARREFDRM--SQRDVVAWSTMIAGYAQNGRPLESLELFERM 342

Query: 142 E----------VISWTTMCTGLERNAMTKLAREYF--VQMPNKDIVAWNAMITAYVDAGN 189
           +          ++   + C  L  + + +    Y    ++P    +  +A+I  Y   G+
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLG-SALIDMYTRCGH 401

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           + +A  +F+ M Q+ V TWN+MI   A NG    A+ L   M ++   PNE T  ++L +
Sbjct: 402 VGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAA 461

Query: 250 CE--GMLENMLA 259
           C   G+++  +A
Sbjct: 462 CTHAGLVDQGMA 473


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 235/465 (50%), Gaps = 34/465 (7%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R++   +A++  Y +   V+ AR VFD++ E +V SW+++I    + ++ D    L   M
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 216

Query: 116 P-----------LKLKNVVSWT-TVVLGCAHNGLIAK------LEVISWTTMCTGLERNA 157
                       + + N+ + T  + +G A +  + +      + V + T +     +  
Sbjct: 217 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 276

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
              LAR+ F  +  K +V+W AMI   + +  + +A  LF+    R+V  W AM+  YA+
Sbjct: 277 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQ 336

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQET 272
                 A  L + M  S   P + T  S+L+ C        A A A+ LG     +  + 
Sbjct: 337 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC--------AVAGALDLGKWVHSYIDKE 388

Query: 273 SLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
            +   C  +    D   +  D+N+A   F    ++D+  W A+I  ++ HG+G +   +F
Sbjct: 389 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 448

Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
           A M + G KP++ITF+G+L  CSHAGLV +G+K F  M   +G  P+ EHY C+ D+L R
Sbjct: 449 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 508

Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
           AG + EA  ++  MP  + + +V GAL+ ACRLH + ++ +    +L+E++P + G  VL
Sbjct: 509 AGLLDEAHEMIKSMPI-KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVL 567

Query: 452 SANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLL 495
            +N++AA   W + A VRK M+   +KK    S IEV G  H  L
Sbjct: 568 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFL 612



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 28/264 (10%)

Query: 13  ATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN----IVAESAM 64
           A +L  EM+    +P  V+  SM+ +F    ++   +A+   +  +  N    +   +A+
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 268

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           +D Y K G +  AR++F+ + +  V SWT++I+G  ++ +++E R LFD    + ++V+ 
Sbjct: 269 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDST--QNRDVMI 326

Query: 125 WTTVVLGCAHNGLI-----------------AKLEVISWTTMCTGLERNAMTKLAREYF- 166
           WT ++   A    I                  K+ ++S  ++C       + K    Y  
Sbjct: 327 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID 386

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
            +    D +   A++  Y   G++  A  LF     R++  WNA+I  +A +G    A+ 
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 446

Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
           +   M +    PN+ T   +L +C
Sbjct: 447 IFAEMERQGVKPNDITFIGLLHAC 470



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 65/374 (17%)

Query: 92  WTSLISGYFKARQVDEGRRLF---DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           W  +I+ Y K  Q      ++    +M  ++ N ++  +V+  C           +SWT 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMA-PSVLKACGQ---------VSWTQ 141

Query: 149 MCTGLERNAMTK-LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           +   +    + K L R+ FV          NA++  Y +   +  A  +F+ M +R+V +
Sbjct: 142 LGKEIHGFVLKKGLDRDVFVG---------NALMLMYGECACVEYARLVFDKMMERDVVS 192

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT---SCEGMLENMLAHALAI 264
           W+ MI   +RN     A++L+  M   +  P+E    S++        M      HA  I
Sbjct: 193 WSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVI 252

Query: 265 R------LGFEQETSL--TYKCTCHY---------------VFWDWGFQLDVNSARLA-- 299
           R      +G    T+L   Y    H                V W       + S RL   
Sbjct: 253 RNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEA 312

Query: 300 ---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F+  + +DV+ WTAM+ AY+      Q F LF +M  SG +P ++T V +LS C+ A
Sbjct: 313 RALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVA 372

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAE----HYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           G ++ G+        +Y  K R E      + L D+  + G +  A R+   +    RD 
Sbjct: 373 GALDLGKWV-----HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLF--IEAISRDI 425

Query: 413 VVLGALLGACRLHG 426
            +  A++    +HG
Sbjct: 426 CMWNAIITGFAMHG 439


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/504 (31%), Positives = 237/504 (47%), Gaps = 71/504 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +  A KLF  +  PD     ++   F      P    LF +    Q  +   +     
Sbjct: 50  GDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSH-MLQHCVTPNAFTFPS 108

Query: 68  YVKAGRVDEARK-----VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            ++A +++E  K     V    + G+ Y+  +LI  YF    +D+ RR+F  M     NV
Sbjct: 109 LIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTM--SDPNV 166

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMI 181
           VSWT++V G +  GL+ +                     A   F  MP  K+ V+WNAMI
Sbjct: 167 VSWTSLVSGYSQWGLVDE---------------------AFRVFELMPCKKNSVSWNAMI 205

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             +V      +A  LF  M           +DR+       AA  L             +
Sbjct: 206 ACFVKGNRFREAFALFRRMRVEK----KMELDRFV------AATML-------------S 242

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLT---YKCTCHYVFWDWGFQLDVNSARL 298
            CT +    +GM  +       I L  +  T++     KC C            ++ A  
Sbjct: 243 ACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGC------------LDKAFH 290

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAG 357
            F  L+ K V SW  MI  ++ HG G    RLF  M +     PD ITFV VL+ C+H+G
Sbjct: 291 VFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSG 350

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+G   F  M   +G  P  EHY C+ D+L RAG+++EA +V+ +M P   D  VLGA
Sbjct: 351 LVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEM-PMSPDAAVLGA 409

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-V 476
           LLGACR+HG++ + + +G R+IEL P +SG YV+  N++A+ G+W++ A VRK M+ R V
Sbjct: 410 LLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGV 469

Query: 477 KKVASFSQIEVKGKDHTLLAPMRE 500
           KK   FS IE++G  +  +A  R+
Sbjct: 470 KKEPGFSMIEMEGVVNEFVAGGRD 493


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 233/457 (50%), Gaps = 29/457 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + +++  + +I+ Y K G VD AR+VFDE+   ++ SW ++I    +  + +E   L  +
Sbjct: 96  KTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQ 155

Query: 115 MPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +      +T  +V+  CA    +++ +++    +   ++ N                
Sbjct: 156 MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN---------------- 199

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +    A++  Y   G M  A  +F  MP R+V TW++M   Y +N     A+ L    +
Sbjct: 200 -VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAW 258

Query: 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           ++    ++   +S++ +C G   M+E    +AL  + GF     +       Y       
Sbjct: 259 ETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCG--- 315

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  +   F  +E ++VV W AMI   S H    +V  LF +M + G  P+++TFV V
Sbjct: 316 --GIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C H GLV+KG+K F+LM++ +   P   HYSC+ D L RAGQ+ EA  ++SK+ P  
Sbjct: 374 LSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL-PFN 432

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
               + G+LL +CR HG++ +A+   ++L +++P +SG Y+L +N++AA G+WDE A++R
Sbjct: 433 ASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMR 492

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVV 505
           K + E  VKK    S IE+K K H  +   R    +V
Sbjct: 493 KLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIV 529



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 24/231 (10%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V CA      L    L  A A+  AM     N+   +A++D Y K G + +A  VF+ + 
Sbjct: 171 VLCACAAKCALSECQLLHAFAIKAAM---DLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDR---MPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           + +V +W+S+ +GY +    ++   LF +     LK    +  ++V+  CA  GL A +E
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL-MSSVICACA--GLAAMIE 284

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                    G + NA+  L++  F      +I   +++I  Y   G + ++ ++F  + +
Sbjct: 285 ---------GKQVNAL--LSKSGFCS----NIFVASSLIDMYAKCGGIEESYKVFRDVEK 329

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
           RNV  WNAMI   +R+      M L   M Q    PN+ T  S+L++C  M
Sbjct: 330 RNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHM 380



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 60/286 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------------------ 49
           G +K+A  +F+ M     V+ +SM   +++N    +A ALFR                  
Sbjct: 214 GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVI 273

Query: 50  -------AMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                  AM E ++            NI   S++ID Y K G ++E+ KVF ++ + NV 
Sbjct: 274 CACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVV 333

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLE------ 142
            W ++ISG  +  +  E   LF++M  + L  N V++ +V+  C H GL+ K +      
Sbjct: 334 LWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLM 393

Query: 143 ---------VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNM-- 190
                    V  ++ M   L R      A +   ++P N     W +++ +    GN+  
Sbjct: 394 TKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLEL 453

Query: 191 --AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               A +LF++ P  N   +  + + YA NG      K+  L+ +S
Sbjct: 454 AEVAAKKLFDIEPH-NSGNYLLLSNMYAANGKWDEVAKMRKLLKES 498


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 230/452 (50%), Gaps = 33/452 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           + V  + +I+ Y K G+ D AR+VFD +   ++ SW ++I+GY   R+  E  +LF RM 
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +   +  +T     CA     AK  +I     C  L   A+ KLA      + +   V 
Sbjct: 150 REGTQMTEFTLSSTLCA---CAAKYAIIE----CKQLHTIAI-KLA------LDSSSFVG 195

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             A +  Y     +  A  +F  MP++   TW+++   + +NG     + L     +   
Sbjct: 196 -TAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGM 254

Query: 237 MPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGF 289
              E T +SIL++C  +   +E    HA+ ++ GF +     TSL        V+   G 
Sbjct: 255 QLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVD------VYAKCG- 307

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  +   F  +E K+VV W AMI ++S H H ++   LF +M + G  P+E+T++ +
Sbjct: 308 --QIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSI 365

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSH GLVE+GR  FNL+      +P   HYSC+ D+L R+G+  EA +++ KM P E
Sbjct: 366 LSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKM-PFE 424

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
               + G+LLG+ R+H ++R+A    E+L  L+P + G +VL +NV+AA G W+     R
Sbjct: 425 PTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVAR 484

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           K + +   KK    S IE KGK H  +A  RE
Sbjct: 485 KYLRDSGAKKEMGRSWIEAKGKIHVFVAGERE 516



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 37/259 (14%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA----------- 60
           EA KLF  M +       + +T F  +  L    A +  +   Q + +A           
Sbjct: 140 EALKLFSRMHRE-----GTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFV 194

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A +D Y K   + +A  VF+ + E    +W+SL +G+ +    +E   LF     +  
Sbjct: 195 GTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGM 254

Query: 121 NVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            +  +T  +++  CA   LI +   +    +  G  RN                 +    
Sbjct: 255 QLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRN-----------------LFVAT 297

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           +++  Y   G + ++ E+F  M ++NV  WNAMI  ++R+     AM L   M Q    P
Sbjct: 298 SLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFP 357

Query: 239 NETTCTSILTSCE--GMLE 255
           NE T  SIL++C   G++E
Sbjct: 358 NEVTYLSILSACSHTGLVE 376



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 22/170 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
            RN+   ++++D Y K G+++++ +VF ++ E NV  W ++I+ + +     E   LF++
Sbjct: 290 HRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEK 349

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNA 157
           M       N V++ +++  C+H GL+               A+  V+ ++ M   L R+ 
Sbjct: 350 MQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSG 409

Query: 158 MTKLAREYFVQMPNKDIVA-WNAMITAYVDAGNM----AQASELFNLMPQ 202
            T  A +   +MP +   + W +++ +     N+      A +LF L P+
Sbjct: 410 KTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPE 459


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 235/492 (47%), Gaps = 35/492 (7%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVK 70
           ++ +E  +PD ++  S++        L    ++     RA  ES  N+   +A++D Y K
Sbjct: 266 RMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNV--STALVDMYSK 323

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV-V 129
            G V  AR +FD +    V SW S+I GY +         +F +M   +   V  T V V
Sbjct: 324 CGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM---MDEQVEMTNVTV 380

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAG 188
           +G  H               C  L      +   +   Q+    D+   N++I+ Y    
Sbjct: 381 MGALH--------------ACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCK 426

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI-- 246
            +  A+E+F  +  + + +WNAMI  YA+NG    A+     M      P+  T  S+  
Sbjct: 427 RVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIP 486

Query: 247 -LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            L     + +    H L IR   ++   +       Y          V++AR  F+ ++ 
Sbjct: 487 ALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCG-----AVHTARKLFDMMDE 541

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           + V +W AMI  Y  HG G     LF +M K   KP+E+TF+ VLS CSH+GLVE+G + 
Sbjct: 542 RHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQY 601

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M + YG +P  +HY  + D+L RA ++ EA   + KMP  E    V GA+LGACR+H
Sbjct: 602 FGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPI-EPAISVFGAMLGACRIH 660

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQ 484
            +V + +    R+ +L P   G +VL AN++A    WD+ A+VR  ME++ ++K   +S 
Sbjct: 661 KNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSV 720

Query: 485 IEVKGKDHTLLA 496
           +E++ + HT  +
Sbjct: 721 VELQNEVHTFYS 732



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 179/424 (42%), Gaps = 35/424 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+ A + +++ Y K   V+EA K+FD + E ++  W ++ISGY +         L  RM 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 117 LKLK--NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            + K  + ++  +++   A  G +     I   +M  G E           FV +     
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFES----------FVNVS---- 314

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               A++  Y   G++  A  +F+ M  + V +WN+MID Y +NG  GAAM++   M   
Sbjct: 315 ---TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDE 371

Query: 235 RFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
           +      T    L +C  +    +    H L  +L    + S+       Y         
Sbjct: 372 QVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCK----- 426

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            V+ A   FE L+ K +VSW AMIL Y+ +G   +    F +M     KPD  T V V+ 
Sbjct: 427 RVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIP 486

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             +   ++ + +    L+ R           + L D+  + G V  A ++   M   ER 
Sbjct: 487 ALAELSVLPQAKWIHGLVIRT-CLDKNVFVATALVDMYAKCGAVHTARKLFDMMD--ERH 543

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGE--WDEFA 466
                A++     HG  + A  + E++ +  ++P+  +   VLSA  H+   E  +  F 
Sbjct: 544 VTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFG 603

Query: 467 QVRK 470
            ++K
Sbjct: 604 SMKK 607



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 27/316 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
           ++ ++  + K G + EA +VF  I +     + +++ GY +   +D+    F RM    +
Sbjct: 112 QTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGV 171

Query: 120 KNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           + VV ++T ++  C  N  + K + I    +  G   N                 + A  
Sbjct: 172 RPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASN-----------------VFAMT 214

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
            ++  Y     + +A ++F+ MP+R++  WN +I  YA+NG    A++L+  M +    P
Sbjct: 215 GVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRP 274

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
           +  T  SIL +   +    +    H  ++R GFE   +++      Y          V +
Sbjct: 275 DSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCG-----SVGT 329

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           ARL F+R+  K VVSW +MI  Y  +G       +F +M+    +   +T +G L  C+ 
Sbjct: 330 ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389

Query: 356 AGLVEKGRKTFNLMSR 371
            G VE+GR    L+ +
Sbjct: 390 LGDVEQGRFVHKLLDQ 405



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 28/274 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM--I 65
           G V  A  +FD M+    VS  SMI  +++N D   A  +F+ M + Q  +   + M  +
Sbjct: 325 GSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGAL 384

Query: 66  DGYVKAGRVDEAR---KVFDEIYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                 G V++ R   K+ D++  G +V    SLIS Y K ++VD    +F+   L+ K 
Sbjct: 385 HACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFEN--LQHKT 442

Query: 122 VVSWTTVVLGCAHNGLI---------AKLEVI---SWTTMCTGLERNAMTKLAREYFVQ- 168
           +VSW  ++LG A NG I          +L+ I   S+T +        ++ L +  ++  
Sbjct: 443 LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 169 -----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
                  +K++    A++  Y   G +  A +LF++M +R+V TWNAMID Y  +G   A
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKA 562

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           A++L   M +    PNE T   +L++C   G++E
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVE 596


>gi|222637655|gb|EEE67787.1| hypothetical protein OsJ_25518 [Oryza sativa Japonica Group]
          Length = 588

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 248/497 (49%), Gaps = 35/497 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLP-KAEALFRAM---PESQRNIVAESA 63
           G + EA  +FD+M   D VS  ++I    ++ D P +   +F  M    + Q + ++  +
Sbjct: 60  GSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCS 119

Query: 64  MIDGYVKAGRVDEARKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +I      G+++  R+V         EG V     L++ Y+K       RRLFD M    
Sbjct: 120 VIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAM--SE 177

Query: 120 KNVVSWTTVVLGCAHNGLI---------AKLEVISWTTMCTGLERNAMTKLAR----EYF 166
           ++VVSWTT +     + L               +++  + + L  +   + A+       
Sbjct: 178 RDVVSWTTAISMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACL 237

Query: 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
               + +  A N++IT Y  A  M  A  +F+LMP+R +  WNA+I  YA+NG    A++
Sbjct: 238 KAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALE 297

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEG-----MLENMLAHALAIRLGFEQETSLTYKCTCH 281
           L + M +    PNETT  S+L++        M    + H+ A+ +GF     +       
Sbjct: 298 LFSSMARC-LTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDM 356

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
           Y       + ++  +R AF   E + +++WTA+I A + HG    V  LF  M +SG  P
Sbjct: 357 YAK-----RGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAP 411

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           D +  + VL+ C + G+V+ GR  F+ M+   G +   EHYSC+ D+L RAG++ EA  +
Sbjct: 412 DGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEEL 471

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
           + +MP        L +LLGACR+HGD  + + I   L E +P+ SGAYVL +N++A  G+
Sbjct: 472 MMRMPAGP-SVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGD 530

Query: 462 WDEFAQVRKKMERRVKK 478
           WD  A+VR+KM  + ++
Sbjct: 531 WDGVAKVRRKMRDKRRQ 547



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 33/201 (16%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNL 230
           D+   NA++TAY   G++ +A  +F+ MP R++ +WNA+I   A++G  P       L +
Sbjct: 45  DVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRM 104

Query: 231 MFQSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLT-------YKCTC 280
           +      P+  +  S++ +C  EG LE     H  A++LG E   S+        YKC  
Sbjct: 105 LRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGA 164

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                         SAR  F+ +  +DVVSWT  I        G     LF  M + G  
Sbjct: 165 P------------GSARRLFDAMSERDVVSWTTAI-----SMDGEDALTLFNGMRRDGVP 207

Query: 341 PDEITFVGVLS----DCSHAG 357
           P+E+TFV ++S    DC   G
Sbjct: 208 PNEVTFVALMSALPADCPARG 228



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 165/384 (42%), Gaps = 50/384 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD-EGRRLFDRM 115
           ++   +A++  Y + G + EAR VFD++   ++ SW +LI G  +      E   +F RM
Sbjct: 45  DVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRM 104

Query: 116 PLKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM-TKLAREYFVQMP 170
            L+  +V    +S  +V+  C   G   KLE+        G + +    KL  E +V + 
Sbjct: 105 -LRDGDVQPDRISVCSVIPACGGEG---KLEL--------GRQVHGFAVKLGVEGYVSIG 152

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                  N ++  Y   G    A  LF+ M +R+V +W   I     +     A+ L N 
Sbjct: 153 -------NVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMDGED-----ALTLFNG 200

Query: 231 MFQSRFMPNETTCTSILTS----CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           M +    PNE T  +++++    C      M+ HA  ++     E + +      Y    
Sbjct: 201 MRRDGVPPNEVTFVALMSALPADCPARGAQMV-HAACLKAAVSGEAAASNSLITMYA--- 256

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 ++ AR+ F+ +  +++++W A+I  Y+ +G       LF+ M +  T P+E TF
Sbjct: 257 --KARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARCLT-PNETTF 313

Query: 347 VGVLSDCSHAGLVEKGRKTFNLM--SRAY--GFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             VLS  +    VE     +  M  SRA   GF         L D+  + G ++E+ +  
Sbjct: 314 ASVLSAVTA---VETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAF 370

Query: 403 SKMPPHERDHVVLGALLGACRLHG 426
            +    +R  +   A++ A   HG
Sbjct: 371 HET--EQRSLIAWTAIISANARHG 392


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 232/475 (48%), Gaps = 37/475 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-------IV 59
           T   + A ++F ++ QPD     + I    ++HD   A AL+  M             +V
Sbjct: 54  TAVTQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLV 113

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            ++     +V  G V   R VF   +  NV    +L+  + K   +     +FD      
Sbjct: 114 LKACTKLFWVNTGSVVHGR-VFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSD--- 169

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
                               K +V++W+ +  G  +     +AR+ F +MP +D+V+WN 
Sbjct: 170 --------------------KGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNV 209

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           MITAY   G M  A  LF+  P ++V +WNAM+  Y  +     A++L + M +    P+
Sbjct: 210 MITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPD 269

Query: 240 ETTCTSILTSCEGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           E T  S+L++C  + +     HA  + L   + ++L        ++   G   ++     
Sbjct: 270 EVTMLSLLSACADLGDXGEKVHAKIMELNKGKLSTLLGNALVD-MYAKCG---NIGKGVC 325

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F  +  KD+VSW ++I   + HGH  +   LF  M ++   PDEITFVGVL+ CSH G 
Sbjct: 326 VFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGN 385

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V++G + F LM   Y  +P   H  C+ D+L RAG +KEA   ++ M   E + +V  +L
Sbjct: 386 VDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKI-EPNAIVWRSL 444

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           LGAC++HGDV +A    E+L+ ++   SG YVL +NV+A+ GEWD    VRK M+
Sbjct: 445 LGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENVRKLMD 499


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/499 (29%), Positives = 241/499 (48%), Gaps = 64/499 (12%)

Query: 8   GKVKEATKLFDEMS------QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIV 59
           G   +A  LF  M       QPD  +  +++T+     +  +   +   +  +   +NI+
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 314

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
            E+ ++  Y + GR++ A+++F+ + E N YSW S+I GY +  +  E  RLF +M L  
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQL-- 372

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTM---CTGLERNAMTKLAREYFVQ--MPNKDI 174
                          NG+  K +  S ++M   C  L  +   +    + V+  M  + I
Sbjct: 373 ---------------NGI--KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 415

Query: 175 VAWNAMITAYVDAGNMAQASELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +    ++  Y   G+M  A ++++  +   RN   WN+++  YA  G +  +      M 
Sbjct: 416 LQV-VLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEML 474

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
           +S    +  T  +I+        N+L    A+         +  KC              
Sbjct: 475 ESDIEYDVLTMVTIV--------NLLVLETAL-------VDMYSKCGA------------ 507

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  AR  F+ +  K++VSW AMI  YS HG   +   L+  M K G  P+E+TF+ +LS 
Sbjct: 508 ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 567

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH GLVE+G + F  M   Y  + +AEHY+C+ D+L RAG++++A   V KMP  E + 
Sbjct: 568 CSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPI-EPEV 626

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
              GALLGACR+H D+ M     +RL EL P + G YV+ +N++AA G W E   +R+ M
Sbjct: 627 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 686

Query: 473 ERR-VKKVASFSQIEVKGK 490
           + + VKK    S IE+  +
Sbjct: 687 KMKGVKKDPGVSWIEINSE 705



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 179/416 (43%), Gaps = 41/416 (9%)

Query: 21  SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMIDGYVKAGRVDE-- 76
           S  +P+  +S+I   + ++   + +++   M  +  N  A   + ++  Y ++G +D+  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 77  -ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
            ARK+F+E+ E N+ +W ++I  Y +     E   +FDRM   LK  V        C  N
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRM---LKIGV--------CPDN 175

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQAS 194
              A     S   +C  L      K      +    K D    NA+I  Y    +     
Sbjct: 176 FTFA-----SALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 230

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEG 252
           ++F+ M +RN  TWN++I   A+ G    A+ L   M +S     P++ T T++LT C  
Sbjct: 231 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290

Query: 253 MLENMLA---HALAIRLGFEQ----ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
              +      HA  IR    +    ET L       +++ + G    +N A+  F R+  
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELV------HMYSECG---RLNYAKEIFNRMAE 341

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++  SW +MI  Y  +G   +  RLF +M  +G KPD  +   +LS C      +KGR+ 
Sbjct: 342 RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 401

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
            N + R    +        L D+  + G +  A +V  +    +R+  +  ++L  
Sbjct: 402 HNFIVRN-TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG 456


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 255/528 (48%), Gaps = 65/528 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-EALFRAMPES------------ 54
           G +  A ++F  M  PD V   S+++   RN DL +A E L + M +             
Sbjct: 159 GSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSML 218

Query: 55  --------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                                +++ A +A+ID Y + G  D A  VF+ +   NV SW S
Sbjct: 219 AECPRMIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCS 278

Query: 95  LISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           ++    +  ++++  R+F  M  +    N  +++  +  C    L  ++        C+ 
Sbjct: 279 MMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVCLGRQIH-------CSA 331

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           ++ N MT             DI   NA+++ Y  +G +++   +   +   ++ +W A I
Sbjct: 332 IKCNLMT-------------DIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAI 378

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFE 269
               +NG    A+ LL  M    F PN+   +S L+SC  +    +    H LA++LG +
Sbjct: 379 SANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCD 438

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
            +      CT + +   +     + SARLAF+ +   DV+SW ++I   + HG    V  
Sbjct: 439 FKV-----CTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLE 493

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            F+ M  SG +PD+ TF+ VL  C+HAGLV++G   F LM+  YG  P   HY+C+ D+L
Sbjct: 494 AFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDML 553

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            R G+  EA+ ++  M P E D ++   LL +C+LH ++ +     ++L+EL    S +Y
Sbjct: 554 GRNGRFDEALHMIKNM-PFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASY 612

Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           VL +N++A   EW +  +VR++M E  VKK A +S IEVK +  T +A
Sbjct: 613 VLMSNLYAMHEEWQDAERVRRRMDEIGVKKDAGWSWIEVKNEVSTFVA 660



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 134/338 (39%), Gaps = 43/338 (12%)

Query: 48  FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107
            R +P    +++A        V+ G       V D             +    K+ ++ +
Sbjct: 11  LRLLPAPTSHVIARPPTAAANVRLGAPPPPDVVLD----------CKRLDALMKSGRLSD 60

Query: 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
              LFDRMP   KNVV+WTT + GC  NG       +    + +G+  N     A     
Sbjct: 61  ALDLFDRMP--RKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAALAAC 118

Query: 168 QMPNKDIV------------------AW--NAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                  +                  AW  + +I  Y   G+M  A E+F  M   +V  
Sbjct: 119 AAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVG 178

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           + +++    RNG    A+++L  M +    PNE T TS+L  C  M+   + H   +++ 
Sbjct: 179 YTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMIGEQI-HGYMLKVM 237

Query: 268 FEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
             Q     Y  T    F+  +G   D + A   FE L++K+VVSW +M+      G    
Sbjct: 238 GSQS---VYASTALIDFYSRYG---DFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLED 291

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
             R+F+ M+    +P+E  F   L  C   G V  GR+
Sbjct: 292 ALRVFSEMISEAVEPNEFAFSIALGAC---GSVCLGRQ 326



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 175/425 (41%), Gaps = 30/425 (7%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
           +G++ +A  LFD M + + V+  + I+   RN     A A+F  M ES       +    
Sbjct: 55  SGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAA 114

Query: 67  GYVKAGRVDEARKVFDEI--------YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
               A     A  + +++        +  + +  + LI  Y +   +     +F RM  +
Sbjct: 115 LAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRM--E 172

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN--AMTKLARE-----------Y 165
             +VV +T++V     NG +A+   +    M  GL+ N   MT +  E           Y
Sbjct: 173 APDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMIGEQIHGY 232

Query: 166 FVQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            ++ M ++ + A  A+I  Y   G+   A  +F  +  +NV +W +M+    R+G    A
Sbjct: 233 MLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDA 292

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284
           +++ + M      PNE   +  L +C  +      H  AI+     +  ++      Y  
Sbjct: 293 LRVFSEMISEAVEPNEFAFSIALGACGSVCLGRQIHCSAIKCNLMTDIRVSNALLSMY-- 350

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
              G    V+       ++E  D+VSWTA I A   +G   +   L  +M   G  P++ 
Sbjct: 351 ---GRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDY 407

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            F   LS C+   L+++GR+  + ++   G   +    + L ++  + GQ+  A      
Sbjct: 408 AFSSGLSSCADLALLDQGRQ-LHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDV 466

Query: 405 MPPHE 409
           M  H+
Sbjct: 467 MNLHD 471


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 266/525 (50%), Gaps = 39/525 (7%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           V  A K+F+ M + D  +  +M++ F ++    KA +LFR M  ++  I  +S  +   +
Sbjct: 103 VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNE--ITPDSVTVMTLI 160

Query: 70  KAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           ++   +++ K+ + ++        +  V    + IS Y K   +D  + +F+ +    + 
Sbjct: 161 QSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRT 220

Query: 122 VVSWTTV-----VLGCAHNG-----LIAKLEV-------ISWTTMCTGLERNAMTKLARE 164
           VVSW ++     V G A +      L+ + E        I+    C   E     +L   
Sbjct: 221 VVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHS 280

Query: 165 YFVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           + + +  ++DI A N  I+ Y  + +   A  LF++M  R   +W  MI  YA  G    
Sbjct: 281 HAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDE 340

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTC 280
           A+ L + M +S   P+  T  S+++ C   G LE      A A   G +++  +     C
Sbjct: 341 ALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMI----C 396

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
           + +   +     ++ AR  F+    K VV+WT MI  Y+ +G   +  +LF++M+    K
Sbjct: 397 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 456

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P+ ITF+ VL  C+H+G +EKG + F++M + Y   P  +HYSC+ D+L R G+++EA+ 
Sbjct: 457 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALE 516

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
           ++  M   + D  + GALL AC++H +V++A+   E L  L+P  +  YV  AN++AA G
Sbjct: 517 LIRNMSA-KPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAG 575

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMREMGYV 504
            WD FA++R  M++R +KK    S I+V GK+H+    + E G+V
Sbjct: 576 MWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSF--TVGEHGHV 618



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 193/428 (45%), Gaps = 40/428 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A +D +VK   VD A KVF+ + E +  +W +++SG+ ++   D+   LF  M 
Sbjct: 86  DVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMR 145

Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L     + V+  T++   +    +  LE +    +  G++            VQ     +
Sbjct: 146 LNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVD------------VQ-----V 188

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
              N  I+ Y   G++  A  +F  + +  R V +WN+M   Y+  G    A  L  LM 
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248

Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +  F P+ +T  ++  SC   E + +  L H+ AI LG +Q+          Y       
Sbjct: 249 REEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMY-----SK 303

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             D  SARL F+ + ++  VSWT MI  Y+  G   +   LF  M+KSG KPD +T + +
Sbjct: 304 SEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSL 363

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPP 407
           +S C   G +E G K  +  +  YG K R     C  L D+  + G + EA  +    P 
Sbjct: 364 ISGCGKFGSLETG-KWIDARADIYGCK-RDNVMICNALIDMYSKCGSIHEARDIFDNTP- 420

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIEL--QPSS-SGAYVLSANVHAARGE--W 462
            E+  V    ++    L+G    A  +  ++I+L  +P+  +   VL A  H+   E  W
Sbjct: 421 -EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479

Query: 463 DEFAQVRK 470
           + F  +++
Sbjct: 480 EYFHIMKQ 487



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 150 CTGLERNAMTKLAREYFVQMPN-KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C  L      ++   + ++ P   D+    A +  +V   ++  A+++F  MP+R+  TW
Sbjct: 62  CARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTW 121

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-----GMLENMLAHALA 263
           NAM+  + ++G    A  L   M  +   P+  T  +++ S        +LE M  HA+ 
Sbjct: 122 NAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAM--HAVG 179

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD--VVSWTAMILAYSNH 321
           IRLG + + ++       Y     G   D++SA+L FE ++  D  VVSW +M  AYS  
Sbjct: 180 IRLGVDVQVTVANTWISTY-----GKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVF 234

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
           G  F  F L+  ML+   KPD  TF+ + + C +   + +GR
Sbjct: 235 GEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGR 276



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 10/163 (6%)

Query: 196 LFNLMPQRNVWTWNAMI-DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           L+ +    +V  WN  I +   RN P   ++ L   M +  F PN  T   +  +C  + 
Sbjct: 8   LYRISGLSSVNAWNLQIREAVNRNDPV-ESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66

Query: 255 E---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
           +     + HA  I+  F  +  +       +V  +      V+ A   FER+  +D  +W
Sbjct: 67  DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCN-----SVDYAAKVFERMPERDATTW 121

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            AM+  +   GH  + F LF  M  +   PD +T + ++   S
Sbjct: 122 NAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSAS 164


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 234/476 (49%), Gaps = 66/476 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEG--NVYSWTSLISGYFKARQVDEGRRLFDR 114
           N    SA++D Y    RV  AR VFD +  G   +  W ++I GY +A   ++   LF R
Sbjct: 304 NSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFAR 363

Query: 115 MPLKLKNVVSWTT---VVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL----- 161
           M  +   V S TT   V+  CA +   A  E +    +  G+      +NA+  L     
Sbjct: 364 METEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLG 423

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               AR  F  +  +D+V+WN +IT  V  G++  A +L   M Q+  +T     D    
Sbjct: 424 DMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFT-----DAATE 478

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA--------HALAIRLGFE 269
           +G  GA         +   +PN  T  ++L  C      MLA        H  A+R   +
Sbjct: 479 DGIAGAD--------EEPVVPNNITLMTLLPGCA-----MLAAPARGKEIHGYAVRHALD 525

Query: 270 QETS-------LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            + +       +  KC C            +  +R  F+RL  ++V++W  +I+AY  HG
Sbjct: 526 SDVAVGSALVDMYAKCGC------------LALSRAVFDRLPRRNVITWNVLIMAYGMHG 573

Query: 323 HGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
            G +   LF RM+ S   KP+E+TF+  L+ CSH+G+V++G + F  M R +G +P  + 
Sbjct: 574 LGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDL 633

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           ++C  DIL RAG++ EA R++S M P E+      + LGACRLH +V + +   ERL EL
Sbjct: 634 HACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAAERLFEL 693

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +P  +  YVL  N+++A G W++ ++VR +M +R V K    S IE+ G  H  +A
Sbjct: 694 EPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELDGVIHRFMA 749



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/498 (21%), Positives = 195/498 (39%), Gaps = 100/498 (20%)

Query: 18  DEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP------------------------E 53
           D +  P P    +++T + R  DL  A ALF AMP                        +
Sbjct: 87  DLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALD 146

Query: 54  SQRNIVAESAMIDGY---------------VKAGRVDEARKVFDEIYEGNV-YSWTSLIS 97
           + R+++ E   +  +               ++ GR   A  + +   +G+  +++ +L+S
Sbjct: 147 ALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLS 206

Query: 98  GYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAK-LEVI--------- 144
            Y +   VD+ + LF  +    +    VV+W T+V     +G   + +EV+         
Sbjct: 207 MYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVR 266

Query: 145 -------SWTTMCTGLERNAMTKLARE-YFVQMPNKDIVA----WNAMITAYVDAGNMAQ 192
                  S    C+ LE   M  L RE +   + + D+ A     +A++  Y     +  
Sbjct: 267 PDGVTFASALPACSQLE---MLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGA 323

Query: 193 ASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTS 249
           A  +F+++P  +R +  WNAMI  YA+ G +  A++L   M  ++  +P+ETT   +L S
Sbjct: 324 ARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPS 383

Query: 250 C---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           C   E        H   ++ G      +       Y         D+++AR  F  +E +
Sbjct: 384 CARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLG-----DMDAARWIFATIEPR 438

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSG------------------TKPDEITFVG 348
           DVVSW  +I      GH    F+L   M + G                    P+ IT + 
Sbjct: 439 DVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMT 498

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +L  C+      +G++      R +         S L D+  + G +  +  V  ++P  
Sbjct: 499 LLPGCAMLAAPARGKEIHGYAVR-HALDSDVAVGSALVDMYAKCGCLALSRAVFDRLP-- 555

Query: 409 ERDHVVLGALLGACRLHG 426
            R+ +    L+ A  +HG
Sbjct: 556 RRNVITWNVLIMAYGMHG 573


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/585 (27%), Positives = 267/585 (45%), Gaps = 111/585 (18%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D  S A+++  + +      A  +F  MPE   ++V+ +A+I  Y   G VDEA   F  
Sbjct: 86  DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGR 145

Query: 84  I-----YEG------NVYSWTSLISG---------------------------------- 98
           +     ++G      +V S  +L+S                                   
Sbjct: 146 MRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNS 205

Query: 99  ----YFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LIA---- 139
               Y   + V    R+F+ +P++ ++VVSW +++ G   NG           +++    
Sbjct: 206 MVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTS 265

Query: 140 -----KLEVISWTTMCTGLERNAMTKLAREYFVQ-----MPNKDIVAWNAMITAYVDAGN 189
                ++ VI+    C  L     +    EY        +  KD+V   A++  +   GN
Sbjct: 266 AVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM------PNETTC 243
           +A A E+F+ +  +NV  W+AMI  Y +      A++L   M     M      PN  T 
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 244 TSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDV 293
            S++ +C  +  +  A   H  A+  G +Q+         +  KC             D+
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCG------------DI 433

Query: 294 NSARLAFERLE--AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
              R  F  ++   + VVSW++MI A   HG G +   LF+ M   G +P+EIT++ VLS
Sbjct: 434 EHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLS 493

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLVE+G+  FN M + YG  P  +HY+CL D+L RAG + EA  V+  MP  + D
Sbjct: 494 ACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPI-KAD 552

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             + G+LL AC LHG+ ++ + + ++++ L  +S G +VL AN++   G WD+  ++R +
Sbjct: 553 LALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVE 612

Query: 472 MERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           + R  ++K+   S IE+  + ++ +A     P  EM Y  L  +D
Sbjct: 613 LRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLD 657



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LEN 256
           +  ++ + WN++I + A   P+  A+     M       N  T  ++L +C  +   L  
Sbjct: 13  ISHKDTFHWNSLIAKNATQNPQ-TALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 257 MLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVS 310
           +  HA   RLG     F     +     C + ++         +A++  E  E   DVVS
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYY---------AAQVFDEMPEGSVDVVS 122

Query: 311 WTAMILAYSNHGHGFQVFRLFARML-------KSGTKPDEITFVGVLSDCS---HAGLVE 360
           WTA+I AYS++G   + F  F RM              D ++   ++S C+    +  + 
Sbjct: 123 WTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLR 182

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G     L+ + YGF       + +  +      V  A RV + +P  +RD V   +L+ 
Sbjct: 183 RGSAVHGLVVK-YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 421 ACRLHGDVRMA-----DYIGERLIELQPS 444
              L+G+   A     D + E    ++P+
Sbjct: 242 GFXLNGEAERALRTFEDMVSEGTSAVEPN 270


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 263/543 (48%), Gaps = 61/543 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++ A KLFD   Q D VS   +I+ +++N  + +AE LFR M  +   I  +S     ++
Sbjct: 210 LQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISA--GIKPDSITFASFL 267

Query: 70  KAGRVDEARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                  + K   EI+          +V+  ++LI  YFK R V+  +++  +      +
Sbjct: 268 PCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQS--SSFD 325

Query: 122 VVSWTTVVLGCAHNGLIAK-LEVISW-------------TTMCTGLERNAMTKLAREYF- 166
            V  TT++ G   NG   + LE   W             +++       A   L +E   
Sbjct: 326 TVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHG 385

Query: 167 ----VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                ++  K  V  +A++  Y   G +  A  +FN + +++   WN+MI   ++NG  G
Sbjct: 386 SIIKTKLDEKCHVG-SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI----RLGFEQETSLT 275
            A+ L   M       +  + +  L++C  +         H L I    R     E+SL 
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 276 ---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
               KC             ++N +R  F+R++ ++ VSW ++I AY NHG   +   LF 
Sbjct: 505 DMYAKCG------------NLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFH 552

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML++G +PD +TF+G++S C HAG V++G + ++LM+  YG   R EHY+C+AD+  RA
Sbjct: 553 EMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRA 612

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++ EA   ++ M P   D  V G LLGAC +HG+V +A+   + L +L P +SG YVL 
Sbjct: 613 GRLDEAFETINSM-PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLL 671

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVL 506
           ANV A  G+W +  +VR  M ER V+KV  +S IEV    H  +A     P+    Y VL
Sbjct: 672 ANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVL 731

Query: 507 KEV 509
             +
Sbjct: 732 DSL 734



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 128/294 (43%), Gaps = 39/294 (13%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV+ G + +A+ +F  +  G   +W  +I G+    Q +     + +M            
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKM------------ 49

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVD 186
             LG   +    K         C GL+   M K+  E    M  K D+   +++I  Y +
Sbjct: 50  --LGAGVSP--DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAE 105

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
            G+++ A  LF+ +PQ++   WN M++ Y +NG  G A+K+   M  S   PN  T   +
Sbjct: 106 NGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACV 165

Query: 247 LTSC--EGMLE-NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSA 296
           L+ C  E ML+     H +A+  G E ++       ++  KC C            + +A
Sbjct: 166 LSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQC------------LQAA 213

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           R  F+     D+VSW  +I  Y  +G   +   LF  M+ +G KPD ITF   L
Sbjct: 214 RKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 154/382 (40%), Gaps = 40/382 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   S++I  Y + G + +A+ +FD I + +   W  +++GY K        ++F  
Sbjct: 90  KEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLE 149

Query: 115 M---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           M    +K  N V++  V+  CA   ++     +    +  GLE ++              
Sbjct: 150 MRHSEIK-PNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVA----------- 197

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                 N ++  Y     +  A +LF+  PQ ++ +WN +I  Y +NG  G A  L   M
Sbjct: 198 ------NTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
             +   P+  T  S L     +L   L H   I  G+    ++           D  F+ 
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLS--LKHCKEIH-GYIIRHAVVLDVFLKSALIDIYFKC 308

Query: 292 -DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            DV  A+    +  + D V  T MI  Y  +G   +    F  +++   KP  +TF  + 
Sbjct: 309 RDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIF 368

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYG------FKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
              + AGL        NL    +G         +    S + D+  + G++  A RV ++
Sbjct: 369 P--AFAGLA-----ALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 405 MPPHERDHVVLGALLGACRLHG 426
           +   E+D +   +++ +C  +G
Sbjct: 422 IT--EKDAICWNSMITSCSQNG 441



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           YV  G++  A  LF  +       WN MI  +   G    A+     M  +   P++ T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 244 TSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
             ++ +C G+       + H     +G +++  +       Y   + G   D   A+  F
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYA--ENGHLSD---AQYLF 116

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           + +  KD V W  M+  Y  +G      ++F  M  S  KP+ +TF  VLS C+   +++
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176

Query: 361 KGRK 364
            G +
Sbjct: 177 LGTQ 180



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 45/173 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP-ESQR---------- 56
           G++  A ++F+ +++ D +   SMIT   +N    +A  LFR M  E  R          
Sbjct: 410 GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGAL 469

Query: 57  --------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++ AES++ID Y K G ++ +R+VFD + E N  
Sbjct: 470 SACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEV 529

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNV-----VSWTTVVLGCAHNGLI 138
           SW S+IS Y     + E   LF  M   L+N      V++  ++  C H G +
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEM---LRNGIQPDHVTFLGIISACGHAGQV 579



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +  A+  F  L+     +W  MI  ++  G        + +ML +G  PD+ TF  V+  
Sbjct: 8   LKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKA 67

Query: 353 CSHAGLVEKGR---KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           C     V+ G+   +T NLM    G K      S L  +    G + +A  +   +P  +
Sbjct: 68  CCGLKSVKMGKIVHETVNLM----GLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP--Q 121

Query: 410 RDHVVLGALLGACRLHGDVRMA--DYIGERLIELQPSS 445
           +D V+   +L     +GD   A   ++  R  E++P+S
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNS 159


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 255/531 (48%), Gaps = 90/531 (16%)

Query: 5   GCTGKVKE-ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           G  GK  E A +LFD++   D +S  SMI+ ++ N    +   +++ M            
Sbjct: 195 GIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 52  -------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       +R I   + ++D Y K G +D A +VF+++ E
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            NV SWTS+I+GY +  + D   +L  +M    +KL +VV+ T+++  CA +G +   + 
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL-DVVAITSILHACARSGSLDNGKD 373

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +        +E N                 +   NA++  Y   G+M  A+ +F+ M  +
Sbjct: 374 VHDYIKANNMESN-----------------LFVCNALMDMYAKCGSMEAANSVFSTMVVK 416

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAH 260
           ++ +WN MI                         P+  T   +L +C  +  LE     H
Sbjct: 417 DIISWNTMI---------------------GELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              +R G+  +  +       YV    G    +  ARL F+ + +KD+VSWT MI  Y  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYV--KCGV---LGLARLLFDMIPSKDLVSWTVMIAGYGM 510

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +    F  M  +G +PDE++F+ +L  CSH+GL+E+G + F +M   +  +P+ E
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R G + +A   +  +P    D  + GALL  CR + D+ +A+ + ER+ E
Sbjct: 571 HYACMVDLLSRTGNLSKAYEFMETLPIAP-DATIWGALLCGCRNYHDIELAEKVAERVFE 629

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           L+P ++G YVL AN++A   +W+E  ++R+K+ ++ ++K    S IE+KGK
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 181/433 (41%), Gaps = 68/433 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G +KE  ++FD M + +      M++ + +  D  ++  LF+ M E       
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG----- 195

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----- 115
                   ++  R + A ++FD++ + +V SW S+ISGY      + G  ++ +M     
Sbjct: 196 --------IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 247

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            + L  ++S   V++GCA++G ++  + +    + +  ER                  I 
Sbjct: 248 DVDLATIIS---VLVGCANSGTLSLGKAVHSLAIKSSFERR-----------------IN 287

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N ++  Y   G++  A  +F  M +RNV +W +MI  Y R+G    A+KLL  M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 236 FMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
              +    TSIL +C   G L+N       I+     E++L     C+ +   +     +
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLF---VCNALMDMYAKCGSM 403

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +A   F  +  KD++SW  MI                        KPD  T   VL  C
Sbjct: 404 EAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACVLPAC 442

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +E+G++    + R  G+       + L D+  + G +  A R++  M P  +D V
Sbjct: 443 ASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIP-SKDLV 499

Query: 414 VLGALLGACRLHG 426
               ++    +HG
Sbjct: 500 SWTVMIAGYGMHG 512



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 60/280 (21%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ------ 233
           +++ Y   G++ +   +F+ M ++NV+ WN M+  YA+ G    ++ L  +M +      
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 234 ------------------------SRFMPNE---------------------TTCTSILT 248
                                   S ++ N                       T  S+L 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 249 SC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
            C   G L      H+LAI+  FE+   + +  T   ++   G   D++ A   FE++  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERR--INFSNTLLDMYSKCG---DLDGALRVFEKMGE 314

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           ++VVSWT+MI  Y+  G      +L  +M K G K D +    +L  C+ +G ++ G+  
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            + + +A   +      + L D+  + G ++ A  V S M
Sbjct: 375 HDYI-KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 185/348 (53%), Gaps = 14/348 (4%)

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
           +  LA + F  MP + +V +N M++  +  G +  A E+F+ MP  +  +W A+ID + +
Sbjct: 122 LPHLALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVK 181

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSL 274
           NG    A+     M      P+  T  +++++C   G L   M  H L +R G E+   +
Sbjct: 182 NGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRV 241

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
                  Y          V  A   F  +  + VVSW +MI+  + +G   +   LF  M
Sbjct: 242 ANSLIDMYARCG-----QVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEM 296

Query: 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394
            + G KPD +T  GVL+ CSHAGL E G + ++LM+  YG   R EHY C+ D+L RAG+
Sbjct: 297 RRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGR 356

Query: 395 VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           + EAM VV  MP  P+E   VVLGALL  CR+HGD+ MA+ + + L EL P     YVL 
Sbjct: 357 LDEAMHVVETMPMRPNE---VVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLL 413

Query: 453 ANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMR 499
           +N++AA G+WD   +VR  M+ R VKK    S +E+ G  H  ++  R
Sbjct: 414 SNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVEIDGDVHEFVSSDR 461



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 29/251 (11%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPK-AEALFRAMPESQRNIVAESAMIDGYVKA 71
           A KLF     P  +  ++ +  F     LP  A  LF  MP   R++V  + M+ G ++ 
Sbjct: 99  ALKLF-----PSHLLLSTCLARFYLASRLPHLALQLFDTMP--VRSVVTYNTMVSGLMRN 151

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVV 129
           G VD A +VFD +   +  SWT+LI G+ K  + DE    F  M L     + V+   VV
Sbjct: 152 GLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVV 211

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
             CA  G +     +    +  GLERN                 +   N++I  Y   G 
Sbjct: 212 SACAEVGALGLGMWVHRLVLRQGLERN-----------------VRVANSLIDMYARCGQ 254

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A+++F+ + +R V +WN+MI   A NG    A++L   M +  F P+  T T +LT+
Sbjct: 255 VKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTA 314

Query: 250 CE--GMLENML 258
           C   G+ E+ L
Sbjct: 315 CSHAGLTEHGL 325



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 35/233 (15%)

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP--NETTCTSILTSCEGMLENMLAH 260
           R+V +W + I R AR G   AA   L  M  S   P  N+ T  ++L++C     + LA 
Sbjct: 30  RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89

Query: 261 ALAIRL---GFEQETSLTYKCTCHYVFW------DWGFQL-------------------- 291
            LA+ L     +   S     TC   F+          QL                    
Sbjct: 90  PLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGLM 149

Query: 292 ---DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V++A   F+ +   D VSWTA+I  +  +G   +    F  ML    +PD +T + 
Sbjct: 150 RNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIA 209

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           V+S C+  G +  G     L+ R  G +      + L D+  R GQVK A +V
Sbjct: 210 VVSACAEVGALGLGMWVHRLVLR-QGLERNVRVANSLIDMYARCGQVKLAAQV 261



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 38/295 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAESAMI 65
           G V  A ++FD M  PD VS  ++I  F++N    +A   FRAM     + + V   A++
Sbjct: 152 GLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVV 211

Query: 66  DGYVKAGRVDEA----RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +       R V  +  E NV    SLI  Y +  QV    ++F    ++ + 
Sbjct: 212 SACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHS--IRKRT 269

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           VVSW ++++G A NGL            CT        +L  E   Q    D V    ++
Sbjct: 270 VVSWNSMIVGLAANGL------------CT-----EAIELFEEMRRQGFKPDAVTLTGVL 312

Query: 182 TAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
           TA   AG        ++LM         +  +  ++D   R G    AM ++  M     
Sbjct: 313 TACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETM---PM 369

Query: 237 MPNETTCTSILTSCE-----GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
            PNE    ++L  C       M E ++ H   +  G +    L          WD
Sbjct: 370 RPNEVVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWD 424


>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
 gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
          Length = 537

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%)

Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
           G ++ L V++  ++  G   + M+  A + F + P +D+V++N +I  +V AG++ +A E
Sbjct: 154 GFLSDLYVMN--SLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARE 211

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GM 253
           LF+LMP R+  +WN +I   A+      A++L + M      P+     S L++C   G 
Sbjct: 212 LFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGE 271

Query: 254 LE-NMLAHALAIRLGFEQETSLTY-------KCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           LE     H    R   + +T L+        KC C            V+ A   F+    
Sbjct: 272 LEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGC------------VDIALKIFDSSSD 319

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           K++ +W AM++  + HG+G  +   F+RM+++G KPD I+ +GVL  CSH+GLV++ RK 
Sbjct: 320 KNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKL 379

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F+ M   YG     +HY C+AD+L RAG +K+ M ++  M P   D  V   LLG CR+H
Sbjct: 380 FDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDM-PRGGDMSVWSGLLGGCRIH 438

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM--ERRVKKVASFS 483
           GDV +A+   + L+EL+P   G Y + ANV+A    W++   +R+ +   R V K+A FS
Sbjct: 439 GDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFS 498

Query: 484 QIEVKGKDHTLLA 496
            I++ G  H  +A
Sbjct: 499 LIQLDGVAHEFIA 511



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 20/207 (9%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +++I GY+ +   ++A KVFDE  + +V S+  LI G+ KA  V + R LFD MP  +++
Sbjct: 163 NSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMP--VRD 220

Query: 122 VVSWTTVVLGCAHN----------GLIAKLEV-------ISWTTMCTGLERNAMTKLARE 164
            VSW T++ GCA              +  LE+       +S  + C  L      K   +
Sbjct: 221 SVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHD 280

Query: 165 YFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y  +   K D      ++  Y   G +  A ++F+    +N++TWNAM+   A +G    
Sbjct: 281 YIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGEL 340

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
            ++  + M ++   P+  +   +L  C
Sbjct: 341 LLEYFSRMIEAGVKPDGISILGVLVGC 367



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK 70
            +A K+FDE  Q D VS   +I  F++  D+ KA  LF  MP   R+ V+ + +I G  K
Sbjct: 176 NDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMP--VRDSVSWNTIIAGCAK 233

Query: 71  AGRVDEARKVFD-----EIYEGNVYSWTSLISGYFKARQVDEGRRLFD---RMPLKLKNV 122
               +EA ++FD     EI   NV +  S +S   +  ++++G+++ D   R  +K+   
Sbjct: 234 GDYCEEAIELFDFMMDLEIRPDNV-ALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTF 292

Query: 123 VSWTTVVL----GCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLAREYFVQM---- 169
           +S   V      GC    L      +   + +W  M  GL  +   +L  EYF +M    
Sbjct: 293 LSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAG 352

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVWTWNAMIDRYARNGPEGAA 224
              D ++   ++     +G + +A +LF+ M       R    +  M D   R G     
Sbjct: 353 VKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKV 412

Query: 225 MKLLNLM 231
           M+++  M
Sbjct: 413 MEMIKDM 419


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 250/533 (46%), Gaps = 77/533 (14%)

Query: 8   GKVKEATK-LFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAM-------PESQR 56
           G+  EA + L+D +S   +PD V+ AS +    R   L    AL R M        +   
Sbjct: 261 GRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEML----ALGREMHAVVLKDADLAA 316

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN--VYSWTSLISGYFKARQVDEGRRLFDR 114
           N    SA++D Y    +V  AR+VFD + E +  +  W ++I GY +A   +E   LF R
Sbjct: 317 NSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSR 376

Query: 115 MPLKLKNVVSWTT---VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           M  +     S TT   V+  CA +   A  E +    +  G+  N         FVQ   
Sbjct: 377 MEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGN--------RFVQ--- 425

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                 NA++  Y   G M  A  +F ++  R+V +WN +I      G    A +L+  M
Sbjct: 426 ------NALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEM 479

Query: 232 F----------------QSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET 272
                              R MPN  T  ++L  C  +         H  A+R   E + 
Sbjct: 480 QLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDI 539

Query: 273 S-------LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           +       +  KC C            + ++R  F+RL  ++V++W  +I+AY  HG G 
Sbjct: 540 AVGSALVDMYAKCGC------------LAASRAVFDRLPRRNVITWNVLIMAYGMHGLGD 587

Query: 326 QVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
           +   LF  M   G   P+E+TF+  L+ CSH+GLV++G + F+ M R +G KP  + ++C
Sbjct: 588 EAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHAC 647

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L RAG++ EA  +++ M P E+      +LLGACRLH +V + +   ERL EL+P 
Sbjct: 648 VVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPG 707

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            +  YVL  N+++A G WD+   VR +M R+ V K    S IE+ G  H  +A
Sbjct: 708 EASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMA 760



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 21/264 (7%)

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGP 220
           R   +  P+  +   NA++TAY   G++  A  LF       R+  ++N++I        
Sbjct: 91  RRALLHRPSPAV--GNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQ 148

Query: 221 -EGAAMKLLNLMFQSRFMPNETTCTSILTSC------EGMLENMLAHALAIRLGFEQETS 273
            E A   L +++ + R   +  T  S+L +C      +G      AHA A++ GF  E  
Sbjct: 149 WERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGR 208

Query: 274 LTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAK------DVVSWTAMILAYSNHGHGFQ 326
             +       ++   G    V+ A+  F    A       DVV+W  MI      G   +
Sbjct: 209 ERFPFNALLSMYARLGL---VDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAE 265

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              +   M+  G +PD +TF   L  CS   ++  GR+   ++ +       +   S L 
Sbjct: 266 AVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALV 325

Query: 387 DILRRAGQVKEAMRVVSKMPPHER 410
           D+     +V  A RV   +P   R
Sbjct: 326 DMYAGNEKVASARRVFDMVPEPSR 349


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 229/465 (49%), Gaps = 37/465 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           + V  + +++ Y     +  AR +FD I + N++ W  LI GY      +   +L+ +M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
              L   N  ++  V+  CA    I     I    + TG E                 KD
Sbjct: 169 DYGLVPDNF-TFPFVLKACAALSAIEHGREIHEHVVQTGWE-----------------KD 210

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +    A+I  Y   G +  A E+F+ +  R+   WN+M+  Y++NG   A + L + M  
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270

Query: 234 SRFMPNETT-CTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           +   P E T  T+I  S +   + +    H L+ R  FE    +       Y        
Sbjct: 271 TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCG---- 326

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             V  AR  FERL  K VVSW AMI  Y+ HGH  +   LF  M +   KPD ITFVGVL
Sbjct: 327 -SVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVL 384

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S CSH GL+E+G   F  M R Y   P  +HY+C+ D+L  +G++ EA  ++ +M     
Sbjct: 385 SACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLP- 443

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  V GALL +C++H +V + +   ERLIEL+P  +G YV+ +N++A  G+W+  A++RK
Sbjct: 444 DSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRK 503

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
            M +RR+KK  + S IEVK K H  L+     P+ +  Y  L+ V
Sbjct: 504 LMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERV 548



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           ++++   +A+ID Y K G V  AR+VFD+I   +   W S+++ Y +    D    L   
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSE 267

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAK---LEVISW-----------TTMCTGLERNAM 158
           M L        +  T +   A N  + +   L  +SW           T +     +   
Sbjct: 268 MVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGS 327

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            ++AR  F ++  K +V+WNAMIT Y   G+  +A +LF  M
Sbjct: 328 VRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM 369



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEAL----FRAMPESQRNIVAESAMIDGYVKAGRVDEA 77
           +P   +  + I+    N  LP+   L    +R   ES   +  ++A++D Y K G V  A
Sbjct: 274 RPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV--KTALVDMYAKCGSVRVA 331

Query: 78  RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGCAHNG 136
           R +F+ +    V SW ++I+GY       E   LF+ M    K + +++  V+  C+H G
Sbjct: 332 RNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGG 391

Query: 137 LIA-------------KLE--VISWTTMCTGLERNAMTKLAREYFVQM---PNKDIVAWN 178
           L+              K++  V  +T M   L  +     A    +QM   P+  +  W 
Sbjct: 392 LLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGV--WG 449

Query: 179 AM-----ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           A+     I A V+ G +A    L  L P  +   +  + + YA+ G      KL  LM  
Sbjct: 450 ALLNSCKIHANVELGEIA-LERLIELEPD-DAGNYVILSNIYAQAGKWEGVAKLRKLMTD 507

Query: 234 SRF 236
            R 
Sbjct: 508 RRL 510


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 147/471 (31%), Positives = 231/471 (49%), Gaps = 35/471 (7%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGR 109
           S+++  + +AMI GY + G + +A+++FD + +  V     SW S+ISGY      DE  
Sbjct: 195 SRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAY 254

Query: 110 RLFDRMPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK------- 160
            LF  +  +     S+T  +V+ GCA    I + +      +  GL+ N++         
Sbjct: 255 SLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMY 314

Query: 161 -------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP----QRNVWTWN 209
                   A+  F  +  +D+  WNA+I+ Y       +  EL   M     + NV+TWN
Sbjct: 315 SKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWN 374

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRL 266
            +I  Y  N    +AM+L   M  +   P+  T   IL +C  +         HA +IR 
Sbjct: 375 GIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRA 434

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G + +  +       Y         DV      +  +   ++VS  AM+ AY+ HGHG +
Sbjct: 435 GHDSDVHIGAALVDMYAKCG-----DVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEE 489

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF RML S  +PD +TF+ VLS C HAG +E G +   LM  AY   P  +HY+C+ 
Sbjct: 490 GIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMV-AYNVMPSLKHYTCMV 548

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAGQ+ EA  ++  +P  E D V   ALLG C +H +V + +   E+LIEL+P++ 
Sbjct: 549 DLLSRAGQLYEAYELIKNLPT-EADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNP 607

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           G YV+ AN++A+ G+W    Q R+ M +  ++K    S IE +   H  +A
Sbjct: 608 GNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFVA 658



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 185/467 (39%), Gaps = 97/467 (20%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK-----------ARQVDEGRR 110
           + ++  Y +    + A  VFD +   N++SWT+L+  Y +            + + EG R
Sbjct: 87  TKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVR 146

Query: 111 L---FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
           +   F   P+ LK       V LG   +G+               L+ +   K A E F 
Sbjct: 147 VRLDFFVFPVVLKICCGLCAVELGRQMHGM--------------ALKHDGDMKSAFEMFS 192

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW----TWNAMIDRYARNGPEGA 223
           +   K   ++NAMI  Y + GN+ +A ELF+ M Q  V     +WN+MI  Y        
Sbjct: 193 RFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDE 252

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------S 273
           A  L   + +    P+  T  S+L  C  M        AH+LAI  G +  +        
Sbjct: 253 AYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVE 312

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +  KC             D+ +A++AF+ +  +D+ +W A+I  Y+      ++  L  +
Sbjct: 313 MYSKCQ------------DIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQK 360

Query: 334 MLKSGTKPDEITFVG-----------------------------------VLSDCSHAGL 358
           M + G +P+  T+ G                                   +L+ CS    
Sbjct: 361 MRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLAT 420

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP-PHERDHVVLGA 417
           +++G++      RA G        + L D+  + G VK   RV + +  P+   H    A
Sbjct: 421 IQRGKQVHAYSIRA-GHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSH---NA 476

Query: 418 LLGACRLHGDVRMADYIGERLI--ELQPSS-SGAYVLSANVHAARGE 461
           +L A  +HG       +  R++  +++P   +   VLS+ VHA   E
Sbjct: 477 MLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLE 523



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
           P+ TT  SIL SC   +     HA +I+ GF     +T K     +   +       +A 
Sbjct: 49  PSSTTYASILDSCGSPILGKQLHAHSIKSGFNAHEFVTTK-----LLQMYARNCSFENAC 103

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP--DEITFVGVLSDCSH 355
             F+ +  +++ SWTA++  Y   G   + F LF ++L  G +   D   F  VL  C  
Sbjct: 104 HVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCG 163

Query: 356 AGLVEKGRK 364
              VE GR+
Sbjct: 164 LCAVELGRQ 172


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/450 (32%), Positives = 219/450 (48%), Gaps = 51/450 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +I  + K G V+ AR +F EI + ++ S  ++ISG+    + ++  RLF  +    + 
Sbjct: 70  TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER 129

Query: 122 VVSWTTVVL-------------GCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
           V S T V L              C H G   KL ++S +++ T                 
Sbjct: 130 VSSSTIVGLIPVYSPFGHSYLCNCIH-GFCVKLGIVSHSSVST----------------- 171

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
                     A+ T Y     M  A +LF+   ++ + +WNAMI    +NG   AA+ L 
Sbjct: 172 ----------ALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLF 221

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFW 285
             M ++   PN  T TSIL++C  +    L    H+L     FE    ++      Y   
Sbjct: 222 QTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKC 281

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                  +  AR  F+ +  K+ V+W AMI  Y  HGHG +  +LF  ML S  KP  +T
Sbjct: 282 G-----SITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLT 336

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+ VL  CSHAGLV++G   F+ M   +GF+P AEHY+C+ DIL RAGQ+K+A+  +  M
Sbjct: 337 FLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAM 396

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
           P  E    V GALLGAC +H D  +A    E+L EL P + G YVL +N+++   ++ + 
Sbjct: 397 PV-EPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQA 455

Query: 466 AQVRK-KMERRVKKVASFSQIEVKGKDHTL 494
           A VR+   ++R+ K    + IE+    H  
Sbjct: 456 ASVRQVAKKKRLAKTPGCTLIEIGQVPHVF 485



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 135/311 (43%), Gaps = 60/311 (19%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           S F   G+V+ A  LF E+ + D +SC +MI+ F  N +   +  LF+ +  S   + + 
Sbjct: 74  SLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSS 133

Query: 62  SAM-----------------IDGY-VKAG----------------RVDE---ARKVFDEI 84
           + +                 I G+ VK G                R++E   AR++FDE 
Sbjct: 134 TIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDES 193

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE 142
            E  + SW ++ISG  +    D    LF  M       N V+ T+++  CA    I  L 
Sbjct: 194 AEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQ---IGALS 250

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
           +  W         +++ K  R         ++    A+I  Y   G++  A ELF+LMP+
Sbjct: 251 LGEWV--------HSLIKSNRF------ESNVYVSTALIDMYAKCGSITVARELFDLMPE 296

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE--NML 258
           +N  TWNAMI  Y  +G    A+KL   M  S   P   T  S+L +C   G+++  + +
Sbjct: 297 KNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356

Query: 259 AHALAIRLGFE 269
            H +    GFE
Sbjct: 357 FHTMVHDFGFE 367



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 115/254 (45%), Gaps = 33/254 (12%)

Query: 5   GCT--GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QR 56
           GCT  G    A  LF  M +    P+PV+  S+++   +   L   E +   +  +  + 
Sbjct: 207 GCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFES 266

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRM 115
           N+   +A+ID Y K G +  AR++FD + E N  +W ++ISGY       E  +LF D +
Sbjct: 267 NVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDML 326

Query: 116 PLKLKNV-VSWTTVVLGCAHNGLIAKLEVI---------------SWTTMCTGLERNAMT 159
              +K   +++ +V+  C+H GL+ + + I                +  M   L R    
Sbjct: 327 SSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQL 386

Query: 160 KLAREYFVQMP-NKDIVAWNAMITA---YVDAGNMAQASE-LFNLMPQRNVWTWNAMIDR 214
           K A E+   MP       W A++ A   + D      ASE LF L P+ N+  +  M + 
Sbjct: 387 KKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPE-NIGYYVLMSNI 445

Query: 215 YA--RNGPEGAAMK 226
           Y+  R  P+ A+++
Sbjct: 446 YSVERKYPQAASVR 459


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 240/451 (53%), Gaps = 31/451 (6%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R +  ++A++D Y K G +  A+KVFDE+ E NV SW S++SGY K   + + ++LFD M
Sbjct: 137 RCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLFDEM 196

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVI----------SWTTMCTGLERNAMTKLAREY 165
           P  +K+ +SW +++ G +++G + +   +          SW  M  G       K AR  
Sbjct: 197 P--VKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNL 254

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM--PQRNVWTWNAMIDRYARNGPEGA 223
           F  MPN++ V    +I  Y   G +  A ELF+ M   ++ + ++NAMI  Y++N     
Sbjct: 255 FDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNK 314

Query: 224 AMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALAI-----RLGFEQETSLTY 276
           A++L NLM Q      P+E T  S++++C  +    L++   I     +LG E +  L  
Sbjct: 315 ALELFNLMLQPHVNIQPDEMTFASVISACTQL--GNLSYGTWIESYMEKLGIELDDHLAT 372

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y         ++N A   F  L+ +D+V+++AMI     +    +  RLF  ML+
Sbjct: 373 ALVDLY-----AKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLR 427

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
               P+ +T+ G+L+  +HAGLV++G   F+ M + +G  P A+HY  + D+L RAG+++
Sbjct: 428 VNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSM-KDHGLAPLADHYGIMVDLLGRAGRLE 486

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA  ++  MP  + +  V GALL AC+LH +V + +       +L   ++G   L AN++
Sbjct: 487 EAYELIHSMPV-QPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIY 545

Query: 457 AARGEWDEFAQVRKKMERRV-KKVASFSQIE 486
           ++   WD+  ++RK M  ++  K++  S +E
Sbjct: 546 SSMERWDDAKRMRKAMGNKIFAKISGCSWME 576



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 22/262 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A KLFDEM   D +S  SM+T F  + ++ +A  LF+ M E  ++  + +AMI G
Sbjct: 184 GNLVDAQKLFDEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGE--KSSASWNAMIGG 241

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           YV  G +  AR +FD +   N  +  +LI+GY K  +V+    LFD+M    K ++S+  
Sbjct: 242 YVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNA 301

Query: 128 VVLGCAHNGLIAK-LEVI------------------SWTTMCTGLERNAMTKLAREYFVQ 168
           ++   + N +  K LE+                   S  + CT L   +       Y  +
Sbjct: 302 MIACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEK 361

Query: 169 MPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +  + D     A++  Y  +GN+ +A ELFN + +R++  ++AMI     N     A++L
Sbjct: 362 LGIELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRL 421

Query: 228 LNLMFQSRFMPNETTCTSILTS 249
              M +    PN  T   +LT+
Sbjct: 422 FKEMLRVNICPNLVTYAGLLTA 443


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/496 (30%), Positives = 244/496 (49%), Gaps = 49/496 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           +I   +A+I  Y +   V  AR VFD + E ++ +W ++I GY + R  DE +RL+  M 
Sbjct: 173 DIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEML 232

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL------- 161
                  NVV+  +V+  C  +  +A    +      +G+E      NA+  +       
Sbjct: 233 NVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRL 292

Query: 162 --AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
             ARE F  M  KD V + A+I+ Y+D G +  A  +F  +    +  WNA+I    +N 
Sbjct: 293 DYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNK 352

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA----HALAIRLGFEQETSLT 275
                  L+  M  S   PN  T  SIL S      N+      H  AIR G+EQ   ++
Sbjct: 353 QFEGVFDLVRQMQGSGLSPNAVTLASILPSFS-YFSNLRGGKEVHGYAIRRGYEQNVYVS 411

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                 Y     G    +  AR  F+  +++ ++ WT++I AY+ HG       L+A+ML
Sbjct: 412 TSIIDAY-----GKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQML 466

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
             G +PD +T   VL+ C+H+GLV++    FN M   YG +P  EHY+C+  +L RAG++
Sbjct: 467 DKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKL 526

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            EA++ +S+MP  E    V G LL    + GDV +  +  + L E++P ++G Y++ AN+
Sbjct: 527 SEAVQFISEMPI-EPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNYIIMANL 585

Query: 456 HAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKG-------KD-------------HTL 494
           +A  G+W++  +VR++M+   ++K+   S IE  G       KD               L
Sbjct: 586 YAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEIYALLEGL 645

Query: 495 LAPMREMGYVVLKEVD 510
           L  MRE G V+ +E+D
Sbjct: 646 LGLMREEGCVLQEELD 661



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 155/409 (37%), Gaps = 62/409 (15%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I  Y K+     ARKVFD     N ++W +++ GY           LF         
Sbjct: 73  SKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTP 132

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK----DIVAW 177
             S     + C    L         ++ C+        +LA+E    +  +    DI   
Sbjct: 133 NASPDNFTISCVLKALA--------SSFCS-------PELAKEVHCLILRRGLYSDIFVL 177

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL-LNLMFQSRF 236
           NA+IT Y     +  A  +F+ M +R++ TWNAMI  Y++        +L L ++  S  
Sbjct: 178 NALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAV 237

Query: 237 MPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            PN  T  S++ +C   ++    M  H      G E + SL+      Y       +LD 
Sbjct: 238 APNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCG---RLDY 294

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHG---------HGFQ------------------ 326
             AR  FE +  KD V++ A+I  Y ++G          G +                  
Sbjct: 295 --AREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNK 352

Query: 327 ----VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
               VF L  +M  SG  P+ +T   +L   S+   +  G++      R  G++      
Sbjct: 353 QFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRR-GYEQNVYVS 411

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
           + + D   + G +  A  V        R  ++  +++ A   HGD  +A
Sbjct: 412 TSIIDAYGKLGCICGARWVFDL--SQSRSLIIWTSIISAYAAHGDAGLA 458



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++ +   L  A  +F  M E  ++ V   A+I GY+  G VD+A  VF  +    +
Sbjct: 281 AVVAMYAKCGRLDYAREMFEGMRE--KDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGL 338

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
             W ++ISG  + +Q  EG  +FD +     + +S   V L        + L   S+ + 
Sbjct: 339 NMWNAVISGMVQNKQF-EG--VFDLVRQMQGSGLSPNAVTLA-------SILPSFSYFSN 388

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             G +      + R Y      +++    ++I AY   G +  A  +F+L   R++  W 
Sbjct: 389 LRGGKEVHGYAIRRGY-----EQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWT 443

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++I  YA +G  G A+ L   M      P+  T TS+LT+C
Sbjct: 444 SIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTAC 484



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 33/205 (16%)

Query: 11  KEATKLFDEMSQ-------PDPVSCASMITVF-----LRNHDLPKAEALFRAMPESQRNI 58
           K+   +FD + Q       P+ V+ AS++  F     LR        A+ R     ++N+
Sbjct: 352 KQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGY---EQNV 408

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              +++ID Y K G +  AR VFD     ++  WTS+IS Y           L+ +M  K
Sbjct: 409 YVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDK 468

Query: 119 --LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               + V+ T+V+  CAH+GL+ +    +W         N    +  +Y +Q     +  
Sbjct: 469 GIRPDPVTLTSVLTACAHSGLVDE----AW---------NIFNSMPSKYGIQ---PLVEH 512

Query: 177 WNAMITAYVDAGNMAQASELFNLMP 201
           +  M+     AG +++A +  + MP
Sbjct: 513 YACMVGVLSRAGKLSEAVQFISEMP 537


>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 629

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 222/451 (49%), Gaps = 36/451 (7%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTV 128
           G    A  +F  +   N++ + S+I+ Y    Q D+   +F +M L +    N  ++TT+
Sbjct: 72  GDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKM-LNMNIRPNSHTFTTL 130

Query: 129 VLGCAHNGLIAKLEVISWTTMCTG--------------LERNAMTKLAREYFVQMPNKDI 174
           V  C     ++ LE +   TM +G                ++    LAR+ F +  N+++
Sbjct: 131 VKSCV---TLSSLEQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNV 187

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ- 233
           V W ++++ Y   G + +  ++F+ MPQRN  + +AM+  Y RN      ++L   + + 
Sbjct: 188 VCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKK 247

Query: 234 ----SRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
               +R   N     S+L +C  M    E    H+     G E +  L       Y    
Sbjct: 248 DKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCG 307

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
           W     V  A   F+++  KDV +W+AMIL  + +G+      LF +M K G KP+E+TF
Sbjct: 308 W-----VKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTF 362

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           VGVL+ C+H  L  +  + F +MS  Y   P  EHY C+ DIL R+GQVK+A+  ++ M 
Sbjct: 363 VGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMH 422

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             E D  + G+LL  C +HG   +   +G+ LIE  P  SG YVL AN++A  G+W+  +
Sbjct: 423 I-EPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFDPEHSGRYVLLANMYANMGKWEGVS 481

Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           +VRK M +R V  V  +S IE+    H   A
Sbjct: 482 EVRKLMKDRGVVIVYGWSFIEIDQTLHKFSA 512



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 26/229 (11%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           +S+I VF ++  +  A  +F     S RN+V  ++++ GY   G V+E R VFD++ + N
Sbjct: 160 SSVINVFSKHGAIHLARQVFD--ESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRN 217

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-------NVVSWTTVVLGCAHNGLIAKL 141
             S ++++SGY +     EG +LF  +  K K       N     +V+  C    ++   
Sbjct: 218 EASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACT---VMGAF 274

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E   W  + + +E N +     EY       D+    A+I  Y   G +  A ++F+ M 
Sbjct: 275 EEGKW--IHSYVEENGL-----EY-------DLELGTALIDFYAKCGWVKDAEKVFDKML 320

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            ++V TW+AMI   A NG    A++L   M +    PNE T   +LT+C
Sbjct: 321 VKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTAC 369



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 113/269 (42%), Gaps = 46/269 (17%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +   G V E   +FD+M Q +  S ++M++ ++RN    +   LFR + +  +     
Sbjct: 195 SGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARV 254

Query: 57  --NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV-YSW---TSLISGYFKARQVDEGRR 110
             N     ++++     G  +E + +   + E  + Y     T+LI  Y K   V +  +
Sbjct: 255 KFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEK 314

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM- 169
           +FD+M +K                       +V +W+ M  GL  N   K+A E F +M 
Sbjct: 315 VFDKMLVK-----------------------DVATWSAMILGLAINGNNKMALELFEKME 351

Query: 170 ---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPE 221
              P  + V +  ++TA        ++S LF +M ++     ++  +  ++D  AR+G  
Sbjct: 352 KVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQV 411

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A+  +N M      P+     S+L  C
Sbjct: 412 KKALIFINSM---HIEPDGAIWGSLLNGC 437


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 239/470 (50%), Gaps = 28/470 (5%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  + +N D+  A + F  MP   ++ +  + +I GY KAG VD+AR++FD +     
Sbjct: 110 ALVDFYAKNGDMESAVSAFDEMP--VKDPIPINCLITGYSKAGDVDKARRLFDGMERRTS 167

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW S+I+ Y    +  E   LFDRM  +    N ++ T+V   CA +G           
Sbjct: 168 ASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSG----------- 216

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            + TG       K  R+   +   ++++   A++  YV    +  A   F+ M QR+V  
Sbjct: 217 DLDTG-------KRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVA 269

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W+ MI  YA+NG    +++L   M  +   PNE T   ++++C  +  + L   +     
Sbjct: 270 WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIG---N 326

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           + +   L           D   +   V  AR  F R+E K V++W +MI   + +G    
Sbjct: 327 YAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAED 386

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              L+ +M ++G +P+EITFV +L+ C+HAGLV++G   F  M R +   P+ EH +C+ 
Sbjct: 387 AISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIV 446

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L ++G + EA + +  M   E + V+   LL +CR H DV +A     +L+ ++P +S
Sbjct: 447 DLLCKSGGLWEAYKFICDMEV-EPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNS 505

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
             YVL +N++A  G W +  ++R  M  + V+K++++S I++ G+ H  L
Sbjct: 506 SIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFL 555



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 157/354 (44%), Gaps = 47/354 (13%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +V   T +     +N   + A   F +MP KD +  N +IT Y  AG++ +A  LF+ M 
Sbjct: 104 DVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGME 163

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC----------- 250
           +R   +WN+MI  YA  G    A+ L + M      PN  T TS+ + C           
Sbjct: 164 RRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKR 223

Query: 251 ------EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
                 E  L+N++ H   +         +  KC              ++ AR  F+R+ 
Sbjct: 224 VRDLIGEDDLQNVIVHTALME--------MYVKCRA------------IDDARREFDRMS 263

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            +DVV+W+ MI  Y+ +G   +   LF RM  +  +P+E+T VGV+S C+  G  E   +
Sbjct: 264 QRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQ 323

Query: 365 TFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423
             N         P   +  S L D+  R G V  A  V S+M   ++  +   +++    
Sbjct: 324 IGNYAENQR--LPLTSYLGSALIDMYTRCGHVGRARSVFSRM--EQKGVITWNSMIRGLA 379

Query: 424 LHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAARGEWDEFAQVRKKMER 474
           ++G    A  + E++ E  +QP+  +   +L+A  HA  G  D+     ++M+R
Sbjct: 380 MNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHA--GLVDQGMAFFEEMKR 431



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 26/261 (9%)

Query: 8   GKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-RNIVAES 62
           G+ +EA  LFD M    ++P+ ++  S+ ++  ++ DL   + +   + E   +N++  +
Sbjct: 181 GEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHT 240

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LK 120
           A+++ YVK   +D+AR+ FD + + +V +W+++I+GY +  +  E   LF+RM       
Sbjct: 241 ALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRP 300

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N V+   V+  CA  G    +E I           N    L   Y            +A+
Sbjct: 301 NEVTLVGVISACAQLGSDELVEQIG------NYAENQRLPLT-SYL----------GSAL 343

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G++ +A  +F+ M Q+ V TWN+MI   A NG    A+ L   M ++   PNE
Sbjct: 344 IDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNE 403

Query: 241 TTCTSILTSCE--GMLENMLA 259
            T  ++L +C   G+++  +A
Sbjct: 404 ITFVALLAACTHAGLVDQGMA 424


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 228/447 (51%), Gaps = 37/447 (8%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I+ Y K GR D AR VFD ++  ++ SW ++I+GY  + +  +  +LF RM  +  ++ 
Sbjct: 98  LINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMS 157

Query: 124 SWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            +T  + +  CA    I + + +    +   L+ N+                     A++
Sbjct: 158 EFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVG-----------------TAIL 200

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y     +  A  +F  MP+R + TW+++   Y +NG    A+ L     +      E 
Sbjct: 201 DVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEF 260

Query: 242 TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV-------N 294
           T ++IL++C          +LA+++   Q  ++  KC  H  F+     +DV        
Sbjct: 261 TLSAILSACA---------SLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIE 311

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F  +E K+VV W AMI ++S H H ++   LF +M + G  P+E+T++ VLS CS
Sbjct: 312 KAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCS 371

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAGLVEKGR  F+L+      +P   HYSC+ D+L R+G+  EA  +++KM P E    +
Sbjct: 372 HAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKM-PFEPTASM 430

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            G+LLG+CR + ++R+A    E+L +L+P + G +VL +NV+AA G W+     RK + +
Sbjct: 431 WGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKD 490

Query: 474 RRVKKVASFSQIEVKGKDHTLLAPMRE 500
              KK    S IE KGK H  +   R+
Sbjct: 491 SGAKKEMGRSWIEAKGKVHVFVVGERK 517



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D +  N +I  Y   G    A  +F++M  R++ +WN MI  Y  +G +  A+KL + M 
Sbjct: 91  DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMH 150

Query: 233 QSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +     +E T +S + +C     + E    H +A++L  +  + +       Y   +   
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNM-- 208

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A   FE++  + +V+W+++   Y  +G   +   LF    + G +  E T   +
Sbjct: 209 ---IKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAI 265

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C+   L  +G +   ++ +  GF       + L D+  R GQ+++A  + + M    
Sbjct: 266 LSACASLALKIEGIQLHAVILKC-GFHGNFFVAASLVDVYARCGQIEKAYALFAYME--H 322

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           ++ V+  A++ +   H     A  + E++ +L
Sbjct: 323 KNVVIWNAMIASFSRHAHSWEAMILFEKMQQL 354



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 21/203 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    +A++D Y K   + +A  VF+++ E  + +W+SL +GY +    +E   LF    
Sbjct: 192 NSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQ 251

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISW--TTMCTGLERNAMTKLAREYFVQMPNKDI 174
            +   +  +T   +  A   L  K+E I      +  G   N        +FV       
Sbjct: 252 REGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGN--------FFVAA----- 298

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               +++  Y   G + +A  LF  M  +NV  WNAMI  ++R+     AM L   M Q 
Sbjct: 299 ----SLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQL 354

Query: 235 RFMPNETTCTSILTSCE--GMLE 255
              PNE T  S+L+ C   G++E
Sbjct: 355 GIFPNEVTYLSVLSVCSHAGLVE 377


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/475 (30%), Positives = 236/475 (49%), Gaps = 41/475 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           ++ A ++F ++ QPD     + I    ++HD   A AL+  M   QR++  ++      +
Sbjct: 57  IRYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQM--DQRSVKPDNFTFPFVL 114

Query: 70  KAGR----VDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           KA      V+    V   +    +  NV    +L+  + K   +     +FD        
Sbjct: 115 KACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSD----- 169

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                             K +V++W+ +  G  +     +AR+ F +MP +D+V+WN MI
Sbjct: 170 ------------------KGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMI 211

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
           T Y   G M  A  LF+  P +++ +WNA+I  Y        A++L + M      P+E 
Sbjct: 212 TVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEV 271

Query: 242 TCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T  S+L++C   G LE+    HA  I +   + ++L        ++   G   ++  A  
Sbjct: 272 TMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVD-MYAKCG---NIGKAVR 327

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F  +  KDVVSW ++I   + HGH  +   LF  M  +   PDE+TFVGVL+ CSHAG 
Sbjct: 328 VFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGN 387

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           V++G + F+LM   Y  +P   H  C+ D+L RAG +KEA   ++ M   E + +V  +L
Sbjct: 388 VDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKI-EPNAIVWRSL 446

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           LGAC++HGDV +A    E+L+ ++   SG YVL +NV+A++GEWD    VRK M+
Sbjct: 447 LGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMD 501



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 20/245 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G +K AT +FD+  + D V+ +++I  + +  DL  A  LF  MP  +R++V+ + MI  
Sbjct: 156 GDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP--KRDLVSWNVMITV 213

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y K G ++ AR++FDE    ++ SW +LI GY       E   LFD M            
Sbjct: 214 YTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEM------------ 261

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI--VAWNAMITAYV 185
               C       ++ ++S  + C  L      +      ++M    +  +  NA++  Y 
Sbjct: 262 ----CGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYA 317

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             GN+ +A  +F L+  ++V +WN++I   A +G    ++ L   M  ++  P+E T   
Sbjct: 318 KCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVG 377

Query: 246 ILTSC 250
           +L +C
Sbjct: 378 VLAAC 382


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 238/490 (48%), Gaps = 38/490 (7%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
           + D V C+S++  + +  DL  A  +   + E      + SA++ GY  AGR+ +ARKVF
Sbjct: 195 EQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDD--FSLSALVSGYANAGRMSDARKVF 252

Query: 82  DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--------LKNVVSWTTVVLGCA 133
           D   +     W S+ISGY    +  E   LF++M           + N++S ++ +L   
Sbjct: 253 DNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSLLNVE 312

Query: 134 -----HN---GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
                H+    + A  +++  +T+     +      + + F ++   D +  N MIT Y 
Sbjct: 313 LVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMITVYC 372

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
           + G +  A E+FN MP + + +WN+++    +N     A+   ++M +     ++ +  S
Sbjct: 373 NCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFAS 432

Query: 246 ILTSCEGMLENMLAHAL---AIRLGFEQE----TSLT-YKCTCHYVFWDWGFQLDVNSAR 297
           ++++C       L   L   AI LG E +    TSL  + C C  V             R
Sbjct: 433 VISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLV----------EMGR 482

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
             F+ +   D VSW  M++ Y+ +G+G +   LF  M  SG +P  ITF G+LS C H G
Sbjct: 483 KVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCG 542

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           LVE+GR  F  M   Y   P  EHYSC+ D+  R G   EAM ++ +MP     ++ L  
Sbjct: 543 LVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSV 602

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
           L G C  HG+  +     E++I+L P +SGAY+  +N+ A   +W+  A+VR+ M  + V
Sbjct: 603 LRG-CVSHGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILATSEDWEGSAEVRELMRNKNV 661

Query: 477 KKVASFSQIE 486
           +K+   S ++
Sbjct: 662 QKIPGCSWMD 671



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 184/455 (40%), Gaps = 67/455 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G + +A+KLFDEM QP+P S  ++I   +      K+  LF AMP   +   + + ++  
Sbjct: 44  GSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHAMP--HKTHYSWNLIVST 101

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKL--KNV 122
             K+G + +A+ +F+ +   N   W S+I GY +         LF  M   PL+   ++ 
Sbjct: 102 LSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDA 161

Query: 123 VSWTTVVLGCAH------------NGLIAKLEVISWTTMCTGL-----ERNAMTKLAREY 165
              +TV   CA                I   E      +C+ +     +   +   AR  
Sbjct: 162 FVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVV 221

Query: 166 -FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            FV+    D  + +A+++ Y +AG M+ A ++F+         WN++I  Y  NG E  A
Sbjct: 222 GFVK--EVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEA 279

Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-----TSLTY 276
           + L N M ++    + +   +IL+    +L   L    H  A ++G   +     T L  
Sbjct: 280 LALFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDA 339

Query: 277 KCTCHY------------------------VFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
              C +                        V+ + G    V  A+  F  +  K ++SW 
Sbjct: 340 YSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCG---RVEDAKEVFNSMPNKTLISWN 396

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           ++++  + +    +    F+ M K   K D+ +F  V+S C+    +E G + F    +A
Sbjct: 397 SILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLF---GKA 453

Query: 373 YGFKPRAEHYSC--LADILRRAGQVKEAMRVVSKM 405
                 ++   C  L D   + G V+   +V   M
Sbjct: 454 ITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGM 488



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 146/364 (40%), Gaps = 72/364 (19%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------- 53
            S +   G++ +A K+FD    P  V   S+I+ ++ N +  +A ALF  M         
Sbjct: 236 VSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDF 295

Query: 54  ------------------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                         +  +IV  S ++D Y K     ++ K+F E
Sbjct: 296 SAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHE 355

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------- 136
           +   +     ++I+ Y    +V++ + +F+ MP   K ++SW ++++G   N        
Sbjct: 356 LKVYDAILLNTMITVYCNCGRVEDAKEVFNSMP--NKTLISWNSILVGLTQNACPSEALD 413

Query: 137 -------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN----KDIVAWNAMITAYV 185
                  L  K++  S+ ++ +     +  +L  + F +        D +   +++  Y 
Sbjct: 414 TFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYC 473

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G +    ++F+ M + +  +WN M+  YA NG    A+ L N M  S   P+  T T 
Sbjct: 474 KCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTG 533

Query: 246 ILTSCE--GMLEN------MLAHALAIRLGFEQET---SLTYKCTCH----YVFWDWGFQ 290
           IL++C+  G++E        + H   I  G E  +    L  +  C     Y+  +  FQ
Sbjct: 534 ILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQ 593

Query: 291 LDVN 294
            D N
Sbjct: 594 ADAN 597



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 162/393 (41%), Gaps = 72/393 (18%)

Query: 74  VDEARKVFDEIYE-GNVYS----WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
           + EAR++   + + GN++S       L+  Y +   + +  +LFD MP    N  SW T+
Sbjct: 10  IREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQP--NPFSWNTL 67

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
           +    + G                  RN     + E F  MP+K   +WN +++    +G
Sbjct: 68  IEAHINLG-----------------HRNK----SLELFHAMPHKTHYSWNLIVSTLSKSG 106

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS--I 246
           ++ QA  LFN MP +N   WN+MI  Y+R+G    ++ L   M      P ET      +
Sbjct: 107 DLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEM---NLDPLETVHRDAFV 163

Query: 247 LTSCEGMLENMLA-------HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
           L++  G   ++ A       HA     GFE E     K  C  +   +G   D++SA   
Sbjct: 164 LSTVFGACADLFALDCGKQVHARVFIDGFEFEQD---KVLCSSIVNFYGKCGDLDSAARV 220

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
              ++  D  S +A++  Y+N G      ++F     +   P  + +  ++S     G  
Sbjct: 221 VGFVKEVDDFSLSALVSGYANAGRMSDARKVF----DNKVDPCSVLWNSIISGYVSNGEE 276

Query: 360 EKGRKTFNLMSR--AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH------ERD 411
            +    FN M R   +G       +S +A+IL  +  +   + +V +M  H        D
Sbjct: 277 MEALALFNKMRRNGVWG------DFSAVANILSISSSLLN-VELVKQMHDHAFKIGATHD 329

Query: 412 HVVLGALLGA----------CRLHGDVRMADYI 434
            VV   LL A          C+L  ++++ D I
Sbjct: 330 IVVASTLLDAYSKCQHPHDSCKLFHELKVYDAI 362



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 138/349 (39%), Gaps = 47/349 (13%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             +++  + ++  Y + G + +A K+FDE+ + N +SW +LI  +      ++   LF  
Sbjct: 27  HSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHA 86

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           MP K                          SW  + + L ++   + A+  F  MP K+ 
Sbjct: 87  MPHKTH-----------------------YSWNLIVSTLSKSGDLQQAQALFNAMPMKNP 123

Query: 175 VAWNAMITAYVDAGNMAQASELF---NLMPQRNVW--------TWNAMIDRYARNGPEGA 223
           + WN+MI  Y   G    +  LF   NL P   V          + A  D +A +  +  
Sbjct: 124 LVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQV 183

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
             ++    F+  F  ++  C+SI+ +  G   ++ + A  +  GF +E            
Sbjct: 184 HARVFIDGFE--FEQDKVLCSSIV-NFYGKCGDLDSAARVV--GFVKEVDDFSLSALVSG 238

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
           + + G   D   AR  F+       V W ++I  Y ++G   +   LF +M ++G   D 
Sbjct: 239 YANAGRMSD---ARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDF 295

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
                +LS  S    VE  ++  +     + FK  A H   +A  L  A
Sbjct: 296 SAVANILSISSSLLNVELVKQMHD-----HAFKIGATHDIVVASTLLDA 339


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/437 (31%), Positives = 221/437 (50%), Gaps = 28/437 (6%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVV 123
           ARK+FD       + +  LI  Y+   Q  E   L++ +              +   +  
Sbjct: 28  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 87

Query: 124 SWTTVVLGCAHNGLI-AKLEVISW--TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
             +   L   H+    +  E  S+  TT+ T   +      AR  F +M  +D+  WNAM
Sbjct: 88  FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 147

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PN 239
           IT Y   G+M  A ELF+ MP++NV +W  +I  +++NG    A+K+   M + + + PN
Sbjct: 148 ITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 207

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL---TYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L +C  + E  +   L    G+ +E       Y C      +     +DV  A
Sbjct: 208 HITVVSVLPACANLGELEIGRRLE---GYARENGFFDNIYVCNATIEMYSKCGMIDV--A 262

Query: 297 RLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           +  FE L   +++ SW +MI + + HG   +   LFA+ML+ G KPD +TFVG+L  C H
Sbjct: 263 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 322

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            G+V KG++ F  M   +   P+ EHY C+ D+L R G+++EA  ++  M P + D VV 
Sbjct: 323 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM-PMKPDAVVW 381

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           G LLGAC  HG+V +A+   E L +L+P++ G  V+ +N++AA  +WD   ++RK M++ 
Sbjct: 382 GTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKE 441

Query: 476 -VKKVASFSQIEVKGKD 491
            + K A +S     G D
Sbjct: 442 TMTKAAGYSYFVEVGVD 458



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR 73
           ++ F    + D   C ++IT + +   L  A  +F  M  S+R++   +AMI GY + G 
Sbjct: 99  SQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEM--SKRDVPVWNAMITGYQRRGD 156

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVV 129
           +  A ++FD +   NV SWT++ISG+ +     E  ++F  M  K K+V    ++  +V+
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCME-KDKSVKPNHITVVSVL 215

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE--YFVQMPNKDIVAWNAMITAYVDA 187
             CA+ G   +LE+              +   ARE  +F      +I   NA I  Y   
Sbjct: 216 PACANLG---ELEI-----------GRRLEGYARENGFF-----DNIYVCNATIEMYSKC 256

Query: 188 GNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           G +  A  LF  L  QRN+ +WN+MI   A +G    A+ L   M +    P+  T   +
Sbjct: 257 GMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGL 316

Query: 247 LTSC 250
           L +C
Sbjct: 317 LLAC 320



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A ++FDEMS+ D     +MIT + R  D+  A  LF +MP  ++N+ + + +I G+ + G
Sbjct: 129 ARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP--RKNVTSWTTVISGFSQNG 186

Query: 73  RVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRL--FDRMPLKLKNVVSW 125
              EA K+F     D+  + N  +  S++       +++ GRRL  + R      N+   
Sbjct: 187 NYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVC 246

Query: 126 TTVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQM----P 170
              +   +  G+I            +  + SW +M   L  +     A   F QM     
Sbjct: 247 NATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGE 306

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAM 225
             D V +  ++ A V  G + +  ELF  M + +  +     +  MID   R G    A 
Sbjct: 307 KPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAY 366

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
            L+  M      P+     ++L +C
Sbjct: 367 DLIKTM---PMKPDAVVWGTLLGAC 388


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 193/342 (56%), Gaps = 16/342 (4%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A++ AYV  G + +A+++F+ +  +++  W+AM+  YA+ G   AA+K+   + +    
Sbjct: 36  TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 95

Query: 238 PNETTCTSILTSCEG----MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           PNE T +SIL  C      M +    H  AI+   +  +SL   C    +   +  + ++
Sbjct: 96  PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD--SSL---CVSSALLTMYAKKGNI 150

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            SA   F+R   KD+VSW +MI  Y+ HG   +   +F  M K   K D +TF+GV + C
Sbjct: 151 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 210

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +HAGLVE+G K F++M R     P  EH SC+ D+  RAGQ+++AM+V+  M P+     
Sbjct: 211 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAGST 269

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
           +   +L ACR+H    +     E++I ++P  S AYVL +N++A  G+W E A+VRK M 
Sbjct: 270 IWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMN 329

Query: 473 ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           ER VKK   +S IEVK K ++ LA     P+++  Y+ L+++
Sbjct: 330 ERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 371



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 103/206 (50%), Gaps = 22/206 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +R+    +A++D YVK G+V+EA KVF  I + ++ +W+++++GY +  + +   ++F  
Sbjct: 29  ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 88

Query: 115 MP---LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           +    +K  N  ++++++  CA              +M  G + +     +R       +
Sbjct: 89  LTKGGIK-PNEFTFSSILNVCAATN----------ASMGQGKQFHGFAIKSR------LD 131

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
             +   +A++T Y   GN+  A E+F    ++++ +WN+MI  YA++G    A+ +   M
Sbjct: 132 SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 191

Query: 232 FQSRFMPNETTCTSILTSCE--GMLE 255
            + +   +  T   +  +C   G++E
Sbjct: 192 KKRKVKMDGVTFIGVFAACTHAGLVE 217



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 90/288 (31%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-----------SQR 56
           GKV+EA K+F  +   D V+ ++M+  + +  +   A  +F  + +           S  
Sbjct: 46  GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSIL 105

Query: 57  NIVA---------------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           N+ A                            SA++  Y K G ++ A +VF    E ++
Sbjct: 106 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDL 165

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAK------- 140
            SW S+ISGY +  Q  +   +F  M   K+K + V++  V   C H GL+ +       
Sbjct: 166 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 225

Query: 141 ------------------------------LEVIS----------WTTM---CTGLERNA 157
                                         ++VI           W T+   C   ++  
Sbjct: 226 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 285

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           + +LA E  + M  +D  A+  +   Y ++G+  + +++  LM +RNV
Sbjct: 286 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 333


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 244/515 (47%), Gaps = 57/515 (11%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +   G+      +FDE+ + + V    MI  ++ NH    A  +F+ M  +   I  +  
Sbjct: 81  YAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM--AGHGIDPDHY 138

Query: 64  MIDGYVKAGRVDEARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRM 115
                +KA    E   V  +I+          NV+    LIS Y K   + E  R+ D+M
Sbjct: 139 TYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQM 198

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           P +  +VVSW ++V GCA NG     LEV      C  +E   +   A      +P    
Sbjct: 199 PCR--DVVSWNSLVAGCARNGQFDDALEV------CKEMELLGLKPDAGTMASLLP---- 246

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               A+    +D  N++   E+F  +  +++ +WN MI  Y  N     A+ +   M   
Sbjct: 247 ----AVTNTCLD--NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 300

Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVF 284
              P+  +  S+L +C  +   +L    H   +R   +           +  KC C    
Sbjct: 301 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC---- 356

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                   +  AR  F++++ +DVVSWT+MI AY  +G G     LF+RM   G  PD I
Sbjct: 357 --------LEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSI 408

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
            FV VLS CSHAGL+++GR  F LM+      PR EH+ C+ D+L RAGQV EA   + +
Sbjct: 409 AFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQ 468

Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
           MP  P+ER   V GALL ACR++ ++ +     ++L +L P  SG YVL +N++A  G W
Sbjct: 469 MPMEPNER---VWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRW 525

Query: 463 DEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           ++   VR  M+ + +KK+   S  E+  + HT LA
Sbjct: 526 EDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLA 560



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++ AY   G       +F+ +P++NV  +N MI  Y  N     A+ +   M      P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 240 ETTCTSILTSCEG---MLENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
             T   +L +  G   +   M  HA  +R+G +          S+  KC C         
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL-------- 188

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V + R+  +++  +DVVSW +++   + +G       +   M   G KPD  T   +
Sbjct: 189 ---VEACRV-LDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASL 244

Query: 350 LSDCSHAGL 358
           L   ++  L
Sbjct: 245 LPAVTNTCL 253


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 228/449 (50%), Gaps = 50/449 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++  Y   GRV++ARKVFD + + ++ +W  ++  Y +AR  +E   LF  M     +
Sbjct: 108 TALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167

Query: 120 KNVVSWTTVVLGCAH-----------NGLIAKLEVISWTTMCTGLERNAMT---KLAREY 165
            + V   TV+  CAH           + ++    +I     C  +   A     ++A + 
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKL 227

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
           + ++  KDIV    M+  Y   G +  A  +FN MP+++V +W+AMI  YA +     A+
Sbjct: 228 YNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEAL 287

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
            L + M +S   P+E T  SIL     +++            F +  SLT          
Sbjct: 288 NLFHDMQRSGVQPDEITMLSILPIGNALIDM-----------FSKCGSLT---------- 326

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
                LDV      F  +  K+VV+WT++I A + HG G     LF  M   G +P+ +T
Sbjct: 327 ---LALDV------FNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVT 377

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F+G+L  C HAGLVE+GR  F +M + Y  +P  EHY C+ D+L RA  + +A  ++  M
Sbjct: 378 FLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSM 437

Query: 406 PPHERDHVVL-GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
             H R +VV+ G+LL ACR+HGD+ +  +  ++++EL P+  GA VL +N++A  G W++
Sbjct: 438 --HLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWND 495

Query: 465 FAQVRKKME-RRVKKVASFSQIEVKGKDH 492
             +VR  M+ +   K    S +E+ G  H
Sbjct: 496 VKEVRGVMKVQGTWKKKGCSWMELNGSVH 524



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 51/291 (17%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-------- 55
           +   G+V++A K+FD M   D V+   M+  + +  +  +A  LF +M  S+        
Sbjct: 114 YAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVII 173

Query: 56  ----------RNI----------VAESAMIDG---------YVKAGRVDEARKVFDEIYE 86
                     RN+          +   A+ID          Y     ++ A K+++ + E
Sbjct: 174 ATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSE 233

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++   T+++ GY K  +V+    +F+ MP   K+VVSW+ ++ G A +    +   +  
Sbjct: 234 KDIVLSTTMVYGYAKNGKVEIAHSIFNGMP--EKDVVSWSAMIAGYAESSKPMEALNLFH 291

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
               +G++ + +T L+           +   NA+I  +   G++  A ++FN MPQ+NV 
Sbjct: 292 DMQRSGVQPDEITMLS----------ILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVV 341

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           TW ++I   A +G   +A+ L   M      PN  T   +L +C   G++E
Sbjct: 342 TWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVE 392



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 40/265 (15%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +     ++ A KL++ +S+ D V   +M+  + +N  +  A ++F  MPE  +++V+ 
Sbjct: 213 NMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPE--KDVVSW 270

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYS-----------WTSLISGYFKARQVDEGRR 110
           SAMI GY ++ +  EA  +F ++    V               +LI  + K   +     
Sbjct: 271 SAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSILPIGNALIDMFSKCGSLTLALD 330

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           +F+ MP   KNVV+WT+++   A +G       +       G++ N +T L   Y     
Sbjct: 331 VFNAMP--QKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLY----- 383

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAM 225
                       A   AG + +   LF +M Q+         +  M+D   R    G A 
Sbjct: 384 ------------ACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAA 431

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
            L+  M      PN     S+L +C
Sbjct: 432 DLIQSM---HLRPNVVIWGSLLAAC 453


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 257/531 (48%), Gaps = 90/531 (16%)

Query: 5   GCTGKVKE-ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           G  GK  E A++LFD++   D +S  SMI+ ++ N    +   +++ M            
Sbjct: 57  GIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATI 116

Query: 52  -------------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                       +R I   + ++D Y K G +D A +VF+++ E
Sbjct: 117 ISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 176

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMP---LKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            NV SWTS+I+GY +    D    L  +M    +KL +VV+ T+++  CA +G +   + 
Sbjct: 177 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKL-DVVAITSILHACARSGSLDNGKD 235

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           +         +      +A   FV          NA++  Y   G+M  A+ +F+ M  +
Sbjct: 236 VH--------DYIKANNMASNLFV---------CNALMDMYAKCGSMEGANSVFSTMVVK 278

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAH 260
           ++ +WN M+                         P+  T   IL +C  +  LE     H
Sbjct: 279 DIISWNTMV---------------------GELKPDSRTMACILPACASLSALERGKEIH 317

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              +R G+  +  +       YV    G    +  ARL F+ + +KD+VSWT MI  Y  
Sbjct: 318 GYILRNGYSSDRHVANALVDLYV--KCGV---LGLARLLFDMIPSKDLVSWTVMIAGYGM 372

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG+G +    F  M  +G +PDE++F+ +L  CSH+GL+E+G + F +M   +  +P+ E
Sbjct: 373 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 432

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R G + +A + +  +P    D  + GALL  CR++ D+ +A+ + ER+ E
Sbjct: 433 HYACMVDLLSRTGNLSKAYKFIETLPIAP-DATIWGALLCGCRIYHDIELAEKVAERVFE 491

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGK 490
           L+P ++G YVL AN++A   +W+E  ++R+K+ ++ ++K    S IE+KG+
Sbjct: 492 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGR 542



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 175/433 (40%), Gaps = 68/433 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            S +   G +KE  ++FD M + +      M++ + +  D  ++  LF+ M E       
Sbjct: 3   VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG----- 57

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM----- 115
                   ++  R + A ++FD++ + +V SW S+ISGY      + G  ++ +M     
Sbjct: 58  --------IEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 109

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
            + L  ++S   V++GCA +G ++  + +    + +  ER                  I 
Sbjct: 110 DVDLATIIS---VLVGCAKSGTLSLGKAVHSLAIKSSFERR-----------------IN 149

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N ++  Y   G++  A  +F  M +RNV +W +MI  Y R+G    A+ LL  M +  
Sbjct: 150 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 209

Query: 236 FMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
              +    TSIL +C   G L+N       +    +     +    C+ +   +     +
Sbjct: 210 VKLDVVAITSILHACARSGSLDN----GKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 265

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A   F  +  KD++SW  M+                        KPD  T   +L  C
Sbjct: 266 EGANSVFSTMVVKDIISWNTMV---------------------GELKPDSRTMACILPAC 304

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +E+G++    + R  G+       + L D+  + G +  A R++  M P  +D V
Sbjct: 305 ASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIP-SKDLV 361

Query: 414 VLGALLGACRLHG 426
               ++    +HG
Sbjct: 362 SWTVMIAGYGMHG 374



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 35/287 (12%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ--------- 192
           +++S+   C  L      K  R  F  M  K++  WN M++ Y   G+  +         
Sbjct: 1   KLVSFYATCGDL------KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMV 54

Query: 193 -----------ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
                      ASELF+ +  R+V +WN+MI  Y  NG     + +   M       +  
Sbjct: 55  EKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLA 114

Query: 242 TCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T  S+L  C   G L      H+LAI+  FE+   + +  T   ++   G   D++ A  
Sbjct: 115 TIISVLVGCAKSGTLSLGKAVHSLAIKSSFERR--INFSNTLLDMYSKCG---DLDGALR 169

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            FE++  ++VVSWT+MI  Y+  G       L  +M K G K D +    +L  C+ +G 
Sbjct: 170 VFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGS 229

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           ++ G+   + + +A          + L D+  + G ++ A  V S M
Sbjct: 230 LDNGKDVHDYI-KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 275


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 218/439 (49%), Gaps = 29/439 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D Y K G +  AR VFD +   N  SW ++I GY +     E   LF+RM  +  +
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 122 V--VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           V  VS    +  C   G + +   +    +  GL+ N                 +   NA
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSN-----------------VSVMNA 302

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +IT Y     +  AS +F+ + +R   +WNAMI   A+NG    A++L   M      P+
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S++ +   + + + A   H  +IRL  +Q+  +       Y          VN A
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG-----RVNIA 417

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R+ F     + V++W AMI  Y +HG G     LF  M   G  P+E TF+ VLS CSHA
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV++GR+ F  M   YG +P  EHY  + D+L RAG++ EA   + KM P +    V G
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM-PMDPGLSVYG 536

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           A+LGAC+LH +V +A+   +++ EL P     +VL AN++A    W + A+VR  ME+  
Sbjct: 537 AMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNG 596

Query: 476 VKKVASFSQIEVKGKDHTL 494
           ++K   +S I++K + HT 
Sbjct: 597 LQKTPGWSIIQLKNEIHTF 615



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 24/296 (8%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +A +A+ + Y K  R  +AR+VFD +   +  +W +L++GY         R    RM ++
Sbjct: 95  LAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGY--------ARNGLARMAME 146

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV-AW 177
           +        V +          + ++S    C      A  + A  + ++   +++V   
Sbjct: 147 M-------VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVA 199

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A++ AY   G++  A  +F+ MP +N  +WNAMID YA+NG    A+ L N M +    
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 238 PNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
             + +  + L +C   G L E M  H L +R+G +   S+       Y          V+
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK-----RVD 314

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            A   F+ L+ +  VSW AMIL  + +G      RLF RM     KPD  T V V+
Sbjct: 315 LASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI 370



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 34/291 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G ++ A  +FD M   + VS  +MI  + +N D  +A ALF  M E   ++  V+  A +
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +DE  +V + +     + NV    +LI+ Y K ++VD    +FD   L  + 
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE--LDRRT 327

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLARE 164
            VSW  ++LGCA NG       L  +++          ++S       +      +    
Sbjct: 328 QVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHG 387

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y +++  ++D+    A+I  Y   G +  A  LFN   +R+V TWNAMI  Y  +G   A
Sbjct: 388 YSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKA 447

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL 274
           A++L   M     +PNETT  S+L++C        +HA  +  G E  TS+
Sbjct: 448 AVELFEEMKSIGIVPNETTFLSVLSAC--------SHAGLVDEGREYFTSM 490



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 22/265 (8%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + + +A  A+   Y      A A  +F+ MP R+   WNA++  YARNG    AM+++  
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 231 MFQSRF-MPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETS-----LTYKCTCH 281
           M +     P+  T  S+L +C           AHA AIR G E+  +     L   C C 
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                     D+ +AR+ F+ +  K+ VSW AMI  Y+ +G   +   LF RM++ G   
Sbjct: 211 ----------DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDV 260

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            +++ +  L  C   G +++G +   L+ R  G        + L  +  +  +V  A  V
Sbjct: 261 TDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 402 VSKMPPHERDHVVLGALLGACRLHG 426
             ++    R  V   A++  C  +G
Sbjct: 320 FDELD--RRTQVSWNAMILGCAQNG 342


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 233/466 (50%), Gaps = 60/466 (12%)

Query: 60  AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---- 115
           A + ++  Y K+  + + R +FDE    +++ ++SL++    +   +    L  RM    
Sbjct: 40  APALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSAD 99

Query: 116 -----PLKLKNVVSWT----TVVLGCAHNGL----------IAKLEVISWTTMCTGLERN 156
                   L ++ S T    ++ LG   +G           + K  +I     C      
Sbjct: 100 ALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKC------ 153

Query: 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
            +   AR+ F  +  K+ V W A+I+ YV  G   +A ELF  MP R ++ W A+I  + 
Sbjct: 154 GVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFV 213

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH-------ALAIRLGFE 269
           R+G   +A+KL   M +     ++     +L+S  G   ++ AH       +L +RLGF 
Sbjct: 214 RSGESVSAVKLFVDMRRDGVSIDDAF---VLSSAIGGAADLAAHVLGRQLHSLTMRLGFS 270

Query: 270 QE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                      +  KC+            D++SAR  FE +  +D++SWT M++  + HG
Sbjct: 271 SSMIVGNAVVDMYSKCS------------DIHSAREVFEEITGRDIISWTTMLVGEAQHG 318

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              + F L+ RM+ +G KP+E+TFVG++  CSHAGLV+KGR+ F+ M   YG  PR +HY
Sbjct: 319 RAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHY 378

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
           +C  D+L R+G + EA  +++ M P+  D     +LL AC+ + +  M+  + + L+EL+
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTM-PYVPDEATWASLLSACKKYNNAEMSIRVADNLLELR 437

Query: 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEV 487
           P     YVL +NV+A  G+WD    VRK M +  ++K   +S IEV
Sbjct: 438 PKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEV 483



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 35/256 (13%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEAL---FRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
           +PD    AS+ +   R   L   + L   F A P S  ++V +S++ID Y K G  D+AR
Sbjct: 102 RPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVV-KSSLIDMYCKCGVPDDAR 160

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           KVFD I   N   WT+LISGY    + DE   LF  MP   + + +WT ++ G   +G  
Sbjct: 161 KVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMP--GRTLFAWTALISGFVRSG-- 216

Query: 139 AKLEVISWTTMCTGLERNAMT--------------------KLARE-YFVQMP---NKDI 174
              E +S   +   + R+ ++                     L R+ + + M    +  +
Sbjct: 217 ---ESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSM 273

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           +  NA++  Y    ++  A E+F  +  R++ +W  M+   A++G    A  L + M  +
Sbjct: 274 IVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLA 333

Query: 235 RFMPNETTCTSILTSC 250
              PNE T   ++ +C
Sbjct: 334 GVKPNEVTFVGLIYAC 349



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 35/272 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   +A K+FD +   + V   ++I+ ++ N    +A  LFR+MP   R + A +A+I G
Sbjct: 154 GVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMP--GRTLFAWTALISG 211

Query: 68  YVKAGRVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFD---RMPLKL 119
           +V++G    A K+F     D +   + +  +S I G         GR+L     R+    
Sbjct: 212 FVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSS 271

Query: 120 KNVVSWTTVVLGCAHNGL---------IAKLEVISWTTMCTGLERNAMTKLAREYFVQM- 169
             +V    V +    + +         I   ++ISWTTM  G  ++   + A   + +M 
Sbjct: 272 SMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMV 331

Query: 170 -----PNKDIVAWNAMITAYVDAGNMAQASELFNLMP-----QRNVWTWNAMIDRYARNG 219
                PN+  V +  +I A   AG + +  +LF+ M         +  +   +D  +R+G
Sbjct: 332 LAGVKPNE--VTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSG 389

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
               A +L+  M    ++P+E T  S+L++C+
Sbjct: 390 HLAEAEELITTM---PYVPDEATWASLLSACK 418


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 160/557 (28%), Positives = 265/557 (47%), Gaps = 91/557 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRN----------------------------- 38
           G++  A K+FDEMS+ + VS  SMI  + R                              
Sbjct: 183 GELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCV 242

Query: 39  -------HDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                   DL   E ++  +  S  + N +  SA++D Y+K   +D A+++FDE    N+
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTT------VVLGCAHNGL 137
               ++ S Y +     E   +F+ M      P ++  + + ++      ++ G + +G 
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362

Query: 138 IAKLEVISWTTMCTGLERNAM----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           + +    SW  +C  L    M       A   F +M NK +V WN+++  YV+ G +  A
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSRFMPNETTCTSILTSCEG 252
            E F  MP++N+ +WN +I    +      A+++  ++  Q     +  T  SI ++C  
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC-- 480

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----------------NSA 296
                  H  A+ L          K   +Y+  + G QLDV                 SA
Sbjct: 481 ------GHLGALDLA---------KWIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESA 524

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
              F  L  +DV +WTA I A +  G+  +   LF  M++ G KPD + FVG L+ CSH 
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV++G++ F  M + +G  P   HY C+ D+L RAG ++EA++++  MP    D V+  
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND-VIWN 643

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
           +LL ACR+ G+V MA Y  E++  L P  +G+YVL +NV+A+ G W++ A+VR  M E+ 
Sbjct: 644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 703

Query: 476 VKKVASFSQIEVKGKDH 492
           ++K    S I+++GK H
Sbjct: 704 LRKPPGTSSIQIRGKTH 720



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 160/384 (41%), Gaps = 53/384 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++  +++++  Y + G +D ARKVFDE+ E NV SWTS+I GY +     +   LF RM
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 116 PLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
                   N V+   V+  C      AKLE +          RN+  ++           
Sbjct: 227 VRDEEVTPNSVTMVCVISAC------AKLEDLETGEKVYAFIRNSGIEV----------N 270

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D++  +A++  Y+    +  A  LF+     N+   NAM   Y R G    A+ + NLM 
Sbjct: 271 DLMV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 233 QSRFMPNETTCTSILTSCEGMLENML----AHALAIRLGFEQETSLTYKCT-----CH-- 281
            S   P+  +  S ++SC   L N+L     H   +R GFE   ++          CH  
Sbjct: 330 DSGVRPDRISMLSAISSCS-QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388

Query: 282 --------------YVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                          V W+     +    +V++A   FE +  K++VSW  +I       
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGS 448

Query: 323 HGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
              +   +F  M  + G   D +T + + S C H G ++  +  +  + +  G +     
Sbjct: 449 LFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDVRL 507

Query: 382 YSCLADILRRAGQVKEAMRVVSKM 405
            + L D+  R G  + AM + + +
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSL 531



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 239 NETTCT----SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           N++ CT    S L +C+ + E  + H    + G + + S   K        + G +  ++
Sbjct: 27  NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSC--ELGTRESLS 84

Query: 295 SARLAFERLEAKDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            A+  FE  E+      + ++I  Y++ G   +   LF RM+ SG  PD+ TF   LS C
Sbjct: 85  FAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSAC 144

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           + +     G +   L+ +  G+       + L       G++  A +V  +M
Sbjct: 145 AKSRAKGNGIQIHGLIVK-MGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 157/530 (29%), Positives = 246/530 (46%), Gaps = 69/530 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN---- 57
           S FG  G + EA  LFDEM + D V+   MI  +   ++   A  +F  M   + +    
Sbjct: 52  SYFG-KGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAF 110

Query: 58  ---------------------------------IVAESAMIDGYVKAG-RVDEARKVFDE 83
                                            I  ++A++D Y      +D+A  VF  
Sbjct: 111 TISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRG 170

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--NVVSWTTVVLGCAHNGLIAKL 141
           I+  N  SWT+LI+GY        G R+F +M L+    N  S++  V  C   G     
Sbjct: 171 IHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFG 230

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E +       G E N                 +   N+++  Y      ++A+  F  M 
Sbjct: 231 EQLHAAVTKHGFESN-----------------LPVMNSILDMYCRCSCFSEANRYFYEMN 273

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NML 258
           QR++ TWN +I  Y R+ P   ++ + ++M    F PN  T TSI+ +C  +        
Sbjct: 274 QRDLITWNTLIAGYERSNPT-ESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQ 332

Query: 259 AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            H   IR G +   +L+      Y         ++  +   F  +  +D+VSWTAM++ Y
Sbjct: 333 IHGRIIRRGLDGNLALSNALIDMYSKCG-----NIADSHQVFGGMSRRDLVSWTAMMIGY 387

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
             HG+G +   LF +M++SG +PD + F+ +LS CSHAGLV++G + F LM   Y   P 
Sbjct: 388 GTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPD 447

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            E Y C+ D+L RAG+V+EA  ++  M P + D  V G  LGAC+ H    +      R+
Sbjct: 448 QEIYGCVVDLLGRAGKVEEAYELIESM-PFKPDECVWGPFLGACKAHTFPNLGKLAAHRI 506

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEV 487
           ++L+P  +G YV+ +N++AA G+W EFA++RK M+R   KK    S +EV
Sbjct: 507 LDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEV 556



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 20/261 (7%)

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
           +P    V    +I +Y   G + +A  LF+ MP+R+V  W  MI  Y        A  + 
Sbjct: 38  IPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVF 97

Query: 229 NLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFE-----QETSLTYKCTC 280
             M      PN  T +S+L +C+GM       L H LAI+ G +         +    TC
Sbjct: 98  CEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC 157

Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
                     + ++ A + F  +  K+ VSWT +I  Y++   G+   R+F +ML    +
Sbjct: 158 ---------CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVE 208

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
            +  +F   +  C+  G    G +    +++ +GF+      + + D+  R     EA R
Sbjct: 209 LNPFSFSIAVRACTSIGSHTFGEQLHAAVTK-HGFESNLPVMNSILDMYCRCSCFSEANR 267

Query: 401 VVSKMPPHERDHVVLGALLGA 421
              +M  ++RD +    L+  
Sbjct: 268 YFYEM--NQRDLITWNTLIAG 286



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 154/398 (38%), Gaps = 57/398 (14%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRMPL 117
           V  + +I  Y   G + EAR +FDE+ E +V +WT +I+GY           +F + M  
Sbjct: 44  VLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNE 103

Query: 118 KLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           +L  N  + ++V+  C        ++ +S+  +  GL      K   + F+ +       
Sbjct: 104 ELDPNAFTISSVLKAC------KGMKCLSYGRLVHGLA----IKHGLDGFIYVD------ 147

Query: 177 WNAMITAYVDAG-NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            NA++  Y     +M  A  +F  +  +N  +W  +I  Y         +++   M    
Sbjct: 148 -NALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEE 206

Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVFW 285
              N  + +  + +C  +  +      HA   + GFE           +  +C+C     
Sbjct: 207 VELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSC----- 261

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAY--SNHGHGFQVFRLFARMLKSGTKPDE 343
                   + A   F  +  +D+++W  +I  Y  SN      VF +   M   G  P+ 
Sbjct: 262 -------FSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLYVFSM---MESEGFSPNC 311

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            TF  +++ C+    +  G++    + R  G        + L D+  + G + ++ +V  
Sbjct: 312 FTFTSIMAACATLAFLNCGQQIHGRIIRR-GLDGNLALSNALIDMYSKCGNIADSHQVFG 370

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
            M    RD V   A++     HG        GE  +EL
Sbjct: 371 GMS--RRDLVSWTAMMIGYGTHG-------YGEEAVEL 399


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 232/457 (50%), Gaps = 29/457 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + +++  + +I+ Y K G VD AR+VFDE+   ++ SW ++I    +  + +E   L  +
Sbjct: 96  KTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQ 155

Query: 115 MPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +      +T  +V+  CA    +++ +++    +   ++ N                
Sbjct: 156 MQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN---------------- 199

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +    A++  Y   G M  A  +F  MP R+V TW++M   Y +N     A+ L    +
Sbjct: 200 -VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAW 258

Query: 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           ++    ++   +S++ +C G   M+E    +AL  + GF     +       Y       
Sbjct: 259 ETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCG--- 315

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  +   F  +E ++VV W AMI   S H    +V  LF +M + G  P+++TFV V
Sbjct: 316 --GIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C H GLV KG+K F+LM++ +   P   HYSC+ D L RAGQ+ EA  ++SK+ P  
Sbjct: 374 LSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL-PFN 432

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
               + G+LL +CR HG++ +A+   ++L +++P +SG Y+L +N++AA G+WDE A++R
Sbjct: 433 ASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMR 492

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTLLAPMREMGYVV 505
           K + E  VKK    S IE+K K H  +   R    +V
Sbjct: 493 KLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIV 529



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 24/231 (10%)

Query: 26  VSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
           V CA      L    L  A A+  AM     N+   +A++D Y K G + +A  VF+ + 
Sbjct: 171 VLCACAAKCALSECQLLHAFAIKAAM---DLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDR---MPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           + +V +W+S+ +GY +    ++   LF +     LK    +  ++V+  CA  GL A +E
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL-MSSVICACA--GLAAMIE 284

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                    G + NA+  L++  F      +I   +++I  Y   G + ++ ++F  + +
Sbjct: 285 ---------GKQMNAL--LSKSGFCS----NIFVASSLIDMYAKCGGIEESYKVFRDVEK 329

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
           RNV  WNAMI   +R+      M L   M Q    PN+ T  S+L++C  M
Sbjct: 330 RNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHM 380



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 60/286 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFR------------------ 49
           G +K+A  +F+ M     V+ +SM   +++N    +A ALFR                  
Sbjct: 214 GLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVI 273

Query: 50  -------AMPESQR------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                  AM E ++            NI   S++ID Y K G ++E+ KVF ++ + NV 
Sbjct: 274 CACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVV 333

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLE------ 142
            W ++ISG  +  +  E   LF++M  + L  N V++ +V+  C H GL+ K +      
Sbjct: 334 LWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLM 393

Query: 143 ---------VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNM-- 190
                    V  ++ M   L R      A +   ++P N     W +++ +    GN+  
Sbjct: 394 TKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLEL 453

Query: 191 --AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
               A +LF++ P  N   +  + + YA NG      K+  L+ +S
Sbjct: 454 AEVAAKKLFDIEPH-NSGNYLLLSNMYAANGKWDEVAKMRKLLKES 498


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 246/476 (51%), Gaps = 43/476 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           Q +I   SA+I  Y   G++++ARKVFDEI + ++ SWTS+I GY       +   LF  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
           + +   +                +  + ++S  + C+ +    +T+    + ++   ++ 
Sbjct: 168 LLVDENDDDDAM----------FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRG 217

Query: 174 IVAWNAMITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
           +   N ++ AY     G +A A ++F+ +  ++  ++N+++  YA++G    A ++   +
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277

Query: 232 FQSRFMP-NETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQE-----TSLTYKCTCHY 282
            +++ +  N  T +++L   S  G L      H   IR+G E +     + +   C C  
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                     V +AR AF+R++ K+V SWTAMI  Y  HGH  +   LF  M+ SG +P+
Sbjct: 338 ----------VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
            ITFV VL+ CSHAGL  +G + FN M   +G +P  EHY C+ D+L RAG +++A  ++
Sbjct: 388 YITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 403 S--KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
              KM P   D ++  +LL ACR+H +V +A+    RL EL  S+ G Y+L ++++A  G
Sbjct: 448 QRMKMKP---DSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            W +  +VR  M+ R + K   FS +E+ G+ H  L      P RE  Y  L E++
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELN 560



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 67/296 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF--------------- 48
           +   GK+++A K+FDE+ + D VS  SMI  +  N +   A +LF               
Sbjct: 121 YSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180

Query: 49  ------------------RAMPES----------QRNIVAESAMIDGYVKAGR--VDEAR 78
                             + + ES           R +   + ++D Y K G   V  AR
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAH 134
           K+FD+I + +  S+ S++S Y ++   +E   +F R+ +K K    N ++ +TV+L  +H
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL-VKNKVVTFNAITLSTVLLAVSH 299

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           +G +   + I    +  GLE                  D++   ++I  Y   G +  A 
Sbjct: 300 SGALRIGKCIHDQVIRMGLE-----------------DDVIVGTSIIDMYCKCGRVETAR 342

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + F+ M  +NV +W AMI  Y  +G    A++L   M  S   PN  T  S+L +C
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 149/326 (45%), Gaps = 39/326 (11%)

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTG 152
           LF+R   K  +V SW +V+   A +G  A+  ++++++M                  C+ 
Sbjct: 31  LFNRYVDK-TDVFSWNSVIADLARSGDSAE-ALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 153 L-ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
           L +  +  +  ++ FV     DI   +A+I  Y   G +  A ++F+ +P+R++ +W +M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSM 148

Query: 212 IDRYARNGPEGAAMKLLNLMF------QSRFMPNETTCTSILTSC-----EGMLENMLAH 260
           I  Y  NG    A+ L   +             +     S++++C     +G+ E++  H
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI--H 206

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           +  I+ GF++  S+       Y     G +  V  AR  F+++  KD VS+ +++  Y+ 
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYA---KGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263

Query: 321 HGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            G   + F +F R++K+     + IT   VL   SH+G +  G+   + + R  G +   
Sbjct: 264 SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDV 322

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKM 405
              + + D+  + G+V+ A +   +M
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRM 348



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 18/180 (10%)

Query: 194 SELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
           + LFN  + + +V++WN++I   AR+G    A+   + M +    P  ++    + +C  
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 253 MLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
           + +       H  A   G++ +  ++      Y          +  AR  F+ +  +D+V
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-----KLEDARKVFDEIPKRDIV 143

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF------VGVLSDCSHA---GLVE 360
           SWT+MI  Y  +G+      LF  +L      D+  F      V V+S CS     GL E
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/472 (30%), Positives = 241/472 (51%), Gaps = 46/472 (9%)

Query: 71  AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWT 126
            G ++ A  VF +I+  N++SW ++I G+ ++        LF  M L + +V    +++ 
Sbjct: 71  GGDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDM-LIVSSVQPHRLTYP 129

Query: 127 TVV-----LGCAHNGLIAKLEVISWTTMCTGLERNA----------MTKLAREYFVQMPN 171
           +V      LG AH G      VI          RN           ++++ + ++ +M +
Sbjct: 130 SVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERM-D 188

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            DIVAWN+MI      G + ++ +LF+ MP RN  +WN+MI  Y RNG    A+ L   M
Sbjct: 189 FDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQM 248

Query: 232 FQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYK-----CTCHYV 283
            + R  P+E T  S+L +      + +    H    +  FE    +T       C C   
Sbjct: 249 QEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCG-- 306

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    +  A   FE    K + SW  MIL  + +G   +  +LF+R+  S  +PD+
Sbjct: 307 --------SIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDD 358

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +TFVGVL+ C+++GLV+K ++ F+LMS+ Y  +P  +HYSC+ D L RAG ++EA  ++ 
Sbjct: 359 VTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIR 418

Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
            MP +  D ++  +LL ACR HG+V +A    + +++L  + S  YVL +N++AA  +++
Sbjct: 419 NMPVNP-DAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFE 477

Query: 464 EFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           E  + R  M E++++K    S IEV G+ H  +A     P  +  Y +L E+
Sbjct: 478 EAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEVYSLLNEL 529



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 24/209 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +I  Y   G + E  K F E  + ++ +W S+I G  K  +VDE R+LFD MP  L+N
Sbjct: 164 NTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMP--LRN 221

Query: 122 VVSWTTVVLGCAHNG-LIAKLEVI----------SWTTMCTGLERNAMTKLAR----EYF 166
            VSW +++ G   NG L   L++           S  TM + L  NA  +L      E+ 
Sbjct: 222 TVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLL--NASARLGALKQGEWI 279

Query: 167 VQMPNKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
                K+    N ++TA     Y   G++ +A ++F + P + + +WN MI   A NG E
Sbjct: 280 HDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCE 339

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             A++L + +  S   P++ T   +LT+C
Sbjct: 340 NEAIQLFSRLECSNLRPDDVTFVGVLTAC 368



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 30/239 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI-- 65
           G+V E+ KLFDEM   + VS  SMI+ ++RN  L +A  LF  M E +R   +E  M+  
Sbjct: 205 GEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQE-ERIKPSEFTMVSL 263

Query: 66  -DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +   + G + +   + D I    +E NV    S+I  Y K   + E  ++F+  P  LK
Sbjct: 264 LNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAP--LK 321

Query: 121 NVVSWTTVVLGCAHNG-------LIAKLEV-------ISWTTMCTGLERNAMTKLAREYF 166
            + SW T++LG A NG       L ++LE        +++  + T    + +   A+EYF
Sbjct: 322 GLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYF 381

Query: 167 VQMPN-----KDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNG 219
             M         I  ++ M+     AG + +A EL   MP   +   W++++    ++G
Sbjct: 382 SLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHG 440


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 233/479 (48%), Gaps = 67/479 (13%)

Query: 81  FDEIYEGNVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG--- 136
           FD++   N +S+ SL++   + R  + +  RL D MP   +NVVS+ TV+   A +G   
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146

Query: 137 --------------------LIAKLEVISWTTMCTGLER--------------------- 155
                                I +  V+S  + C GL                       
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206

Query: 156 --NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
             NAM            AR  F QM  +D V+W +MI  Y  A  +  A ++F++MP ++
Sbjct: 207 MANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQD 266

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
              W A+I  + +NG E  A++L   M     +P      S L +C  +   ++A    +
Sbjct: 267 AIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKV--GLVARGKEV 324

Query: 265 RLGFEQETSL---TYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
             GF    S+    +    H    D   +  D+ +A   F+R+  +D++SW +M+  +S+
Sbjct: 325 H-GFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F RMLK   +P  +TF+ VL+ CSHAGLV  GR+    M + +G +PRAE
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAE 442

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA   +  +            GALLGAC +HG++ +A+ + E L
Sbjct: 443 HYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEAL 502

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
            +L+P +SG YV+ +N+++A G+WD+  QVR  M+ + ++K  ++S IEV+   H  +A
Sbjct: 503 FQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVA 561



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 23/215 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM+D Y KAGRV++AR VFD++   +  SWTS+I+GY +A  +D+  ++FD MP
Sbjct: 204 TVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263

Query: 117 LKLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMT 159
              ++ ++WT ++ G   NG                 +     ++S    C  +   A  
Sbjct: 264 --AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 160 KLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           K    + ++        ++   NA+I  Y   G+M  A  +F+ M +R++ +WN+M+  +
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGF 381

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + NG    ++ +   M +    P   T  ++LT+C
Sbjct: 382 SHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 41/235 (17%)

Query: 7   TGKVKEATKLFDEMSQ----PDP---VSC---ASMITVFLRNHDLPKAEALFRAMPESQR 56
            G+ + A +LF+ M+     P P   VSC    + + +  R  ++     L R++     
Sbjct: 280 NGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV-HGFILRRSIGSDPF 338

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A+ID Y K G +  A  VFD + E ++ SW S+++G+    Q  +   +F+RM 
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERM- 397

Query: 117 LKLKN-----VVSWTTVVLGCAHNGLIAK----LEVIS----------WTTMCTGLERNA 157
             LK+      V++  V+  C+H GL++     LE +           +      L RN 
Sbjct: 398 --LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNR 455

Query: 158 MTKLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASE----LFNLMPQRN 204
             + A E+   + +K       +W A++ A    GN+  A E    LF L P+ +
Sbjct: 456 QLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENS 510


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 43/452 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           NI  E++++  Y    R  +A +VFDE+   +V SWT +ISGY +A   DE   LF RM 
Sbjct: 68  NIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD 127

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           ++  N  ++ +V++ C   G ++  + I       GL   +   +  E            
Sbjct: 128 VE-PNAATFVSVLVACGRKGYLSVGKGIH------GLSFKSAFGVGLE-----------V 169

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            NA++  YV  G +  A ++F+ + ++++ +W ++I    +      A++L   M  S  
Sbjct: 170 SNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGI 229

Query: 237 MPNETTCTSILTSCE--GMLE-----NMLAHALAIRLGFEQETSLT---YKCTCHYVFWD 286
            P+    TS+L++C   G L+     +      AI+   +  T++     KC C      
Sbjct: 230 EPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGC------ 283

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 +  +   F  +  K+V++W A++   + HGH ++V  LF  M++ G +P+E+TF
Sbjct: 284 ------IEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTF 337

Query: 347 VGVLSDCSHAGLVEKGRKTFNLM-SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           + +L+ C H GLV +GR+ FN M  + Y   PR EHY C+ D+L RA  + EA+ +   M
Sbjct: 338 LAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAM 397

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            P   D  ++GALL AC+ +G+  +   I +R +EL    SG YVL +N+HA    WD+ 
Sbjct: 398 -PMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDV 456

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            ++R+ M E+ +KK    + IE+ GK H  + 
Sbjct: 457 TRIRRLMKEKGIKKPPGSTVIELDGKAHEFIV 488



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 52/247 (21%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLI-----SGYFKARQVDEGR 109
           R++V+ + +I GYV+AG  DEA  +F  +  E N  ++ S++      GY    +   G 
Sbjct: 98  RDVVSWTGVISGYVRAGLFDEAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGL 157

Query: 110 RLFDR--MPLKLKNVVSWTTVVLGCAHNGL-----IAKLEVISWTTMCTGLERNAMTKLA 162
                  + L++ N +    V  GC          +A+ +++SWT++ +GL +    K A
Sbjct: 158 SFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEA 217

Query: 163 REYFVQMPNKDI----------------------------------VAWN-----AMITA 183
            E F  M +  I                                  + W+     AM+  
Sbjct: 218 LELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDM 277

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y   G +  + ++FN MP +NV TWNA+++  A +G     ++L   M +    PNE T 
Sbjct: 278 YAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTF 337

Query: 244 TSILTSC 250
            +ILT+C
Sbjct: 338 LAILTAC 344



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAI 264
           +NA++  YA       A  +   + +  F+P+  T  ++L SC    G+ E    H + I
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 265 RLGF----EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           ++GF      E SL +  +    F D         A   F+ +  +DVVSWT +I  Y  
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGD---------ASRVFDEMLVRDVVSWTGVISGYVR 112

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
            G   +   LF RM     +P+  TFV VL  C   G +  G+    L  ++  F    E
Sbjct: 113 AGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKS-AFGVGLE 168

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
             + L D+  + G +  A +V  ++   E+D V
Sbjct: 169 VSNALMDMYVKCGCLPGAKQVFDELA--EKDIV 199



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 117/257 (45%), Gaps = 36/257 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +  A ++FDE+++ D VS  S+I+  ++ +   +A  LF+ M  S  + + +  ++++
Sbjct: 181 GCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVL 240

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +D  R V + I     + ++   T+++  Y K   ++   ++F+ MP   KN
Sbjct: 241 SACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMP--HKN 298

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           V++W  ++ G A +G   K+  +    +  G+  N +T L                 A++
Sbjct: 299 VLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFL-----------------AIL 341

Query: 182 TAYVDAGNMAQASELFNLM-------PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           TA    G + +  + FN M       P R +  +  M+D   R      A++L   M  S
Sbjct: 342 TACCHCGLVNEGRQYFNWMKGQQYNLPPR-LEHYGCMVDLLCRARLLDEALELTKAMPMS 400

Query: 235 RFMPNETTCTSILTSCE 251
              P+     ++L++C+
Sbjct: 401 ---PDVRIMGALLSACK 414


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 218/439 (49%), Gaps = 29/439 (6%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++D Y K G +  AR VFD +   N  SW ++I GY +     E   LF+RM  +  +
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 122 V--VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           V  VS    +  C   G + +   +    +  GL+ N                 +   NA
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSN-----------------VSVMNA 302

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +IT Y     +  AS +F+ + +R   +WNAMI   A+NG    A++L   M      P+
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S++ +   + + + A   H  +IRL  +Q+  +       Y          VN A
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG-----RVNIA 417

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R+ F     + V++W AMI  Y +HG G     LF  M   G  P+E TF+ VLS CSHA
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GLV++GR+ F  M   YG +P  EHY  + D+L RAG++ EA   + KM P +    V G
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM-PMDPGLSVYG 536

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           A+LGAC+LH +V +A+   +++ EL P     +VL AN++A    W + A+VR  ME+  
Sbjct: 537 AMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNG 596

Query: 476 VKKVASFSQIEVKGKDHTL 494
           ++K   +S I++K + HT 
Sbjct: 597 LQKTPGWSIIQLKNEIHTF 615



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 24/296 (8%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
           +A +A+ + Y K  R  +AR+VFD +   +  +W +L++GY         R    RM ++
Sbjct: 95  LAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGY--------ARNGLARMAME 146

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV-AW 177
           +        V +          + ++S    C      A  + A  + ++   +++V   
Sbjct: 147 M-------VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVA 199

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A++ AY   G++  A  +F+ MP +N  +WNAMID YA+NG    A+ L N M +    
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 238 PNETTCTSILTSCE--GML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
             + +  + L +C   G L E M  H L +R+G +   S+       Y          V+
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK-----RVD 314

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
            A   F+ L+ +  VSW AMIL  + +G      RLF RM     KPD  T V V+
Sbjct: 315 LASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI 370



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 34/291 (11%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMI 65
           G ++ A  +FD M   + VS  +MI  + +N D  +A ALF  M E   ++  V+  A +
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 66  DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
               + G +DE  +V + +     + NV    +LI+ Y K ++VD    +FD   L  + 
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE--LDRRT 327

Query: 122 VVSWTTVVLGCAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLARE 164
            VSW  ++LGCA NG       L  +++          ++S       +      +    
Sbjct: 328 QVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHG 387

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y +++  ++D+    A+I  Y   G +  A  LFN   +R+V TWNAMI  Y  +G   A
Sbjct: 388 YSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKA 447

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL 274
           A++L   M     +PNETT  S+L++C        +HA  +  G E  TS+
Sbjct: 448 AVELFEEMKSIGIVPNETTFLSVLSAC--------SHAGLVDEGREYFTSM 490



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 22/265 (8%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           + + +A  A+   Y      A A  +F+ MP R+   WNA++  YARNG    AM+++  
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 231 MFQSRF-MPNETTCTSILTSCEGMLENML---AHALAIRLGFEQETS-----LTYKCTCH 281
           M +     P+  T  S+L +C           AHA AIR G E+  +     L   C C 
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                     D+ +AR+ F+ +  K+ VSW AMI  Y+ +G   +   LF RM++ G   
Sbjct: 211 ----------DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDV 260

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
            +++ +  L  C   G +++G +   L+ R  G        + L  +  +  +V  A  V
Sbjct: 261 TDVSVLAALQACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 402 VSKMPPHERDHVVLGALLGACRLHG 426
             ++    R  V   A++  C  +G
Sbjct: 320 FDELD--RRTQVSWNAMILGCAQNG 342


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 233/479 (48%), Gaps = 67/479 (13%)

Query: 81  FDEIYEGNVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG--- 136
           FD++   N +S+ SL++   + R  + +  RL D MP   +NVVS+ TV+   A +G   
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146

Query: 137 --------------------LIAKLEVISWTTMCTGLER--------------------- 155
                                I +  V+S  + C GL                       
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206

Query: 156 --NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
             NAM            AR  F QM  +D V+W +MI  Y  A  +  A ++F++MP ++
Sbjct: 207 MANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQD 266

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
              W A+I  + +NG E  A++L   M     +P      S L +C  +   ++A    +
Sbjct: 267 AIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKV--GLVARGKEV 324

Query: 265 RLGFEQETSL---TYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
             GF    S+    +    H    D   +  D+ +A   F+R+  +D++SW +M+  +S+
Sbjct: 325 H-GFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F RMLK   +P  +TF+ VL+ CSHAGLV  GR+    M + +G +PRAE
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAE 442

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA   +  +            GALLGAC +HG++ +A+ + E L
Sbjct: 443 HYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEAL 502

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
            +L+P +SG YV+ +N+++A G+WD+  QVR  M+ + ++K  ++S IEV+   H  +A
Sbjct: 503 FQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVA 561



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 23/215 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM+D Y KAGRV++AR +FD++   +  SWTS+I+GY +A  +D+  ++FD MP
Sbjct: 204 TVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263

Query: 117 LKLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMT 159
              ++ ++WT ++ G   NG                 +     ++S    C  +   A  
Sbjct: 264 --AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 160 KLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           K    + ++        ++   NA+I  Y   G+M  A  +F+ M +R++ +WN+M+  +
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGF 381

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + NG    ++ +   M +    P   T  ++LT+C
Sbjct: 382 SHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 41/235 (17%)

Query: 7   TGKVKEATKLFDEMSQ----PDP---VSC---ASMITVFLRNHDLPKAEALFRAMPESQR 56
            G+ + A +LF+ M+     P P   VSC    + + +  R  ++     L R++     
Sbjct: 280 NGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV-HGFILRRSIGSDPF 338

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A+ID Y K G +  A  VFD + E ++ SW S+++G+    Q  +   +F+RM 
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERM- 397

Query: 117 LKLKN-----VVSWTTVVLGCAHNGLIAK----LEVIS----------WTTMCTGLERNA 157
             LK+      V++  V+  C+H GL++     LE +           +      L RN 
Sbjct: 398 --LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNH 455

Query: 158 MTKLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASE----LFNLMPQRN 204
             + A E+   + +K       +W A++ A    GN+  A E    LF L P+ +
Sbjct: 456 QLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENS 510


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 232/453 (51%), Gaps = 49/453 (10%)

Query: 55  QRNIVAE----SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110
           +R +VA+    S++I  Y   G V  AR VFD   E  V  W ++++ Y K     E   
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 111 LFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167
           +F  M L++    + V+  +VV  C   G I   ++  W       E      LAR    
Sbjct: 208 MFKGM-LEVGVAFDEVTLVSVVTAC---GRIGDAKLGKWVAGHVDEE-----GLAR---- 254

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
              N  +V   A++  Y   G + +A  LF+ M  R+V  W+AMI  Y +      A+ L
Sbjct: 255 ---NPKLV--TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGL 309

Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTY-------K 277
            + M  +R  PN+ T  S+L++C   G LE     H+   R      T L         K
Sbjct: 310 FSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAK 369

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
           C C            ++ A  AFE +  K+  +WTA+I   + +G G +   LF+ M ++
Sbjct: 370 CGC------------IDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREA 417

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G +P ++TF+GVL  CSH+ LVE+GR+ F+ M+R YG KPR EHY C+ D+L RAG V E
Sbjct: 418 GIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDE 477

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A + +  MP  E + V+  ALL +C +H +V + +   +++I L PS SG YVL +N++A
Sbjct: 478 AYQFIRTMPI-EPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYA 536

Query: 458 ARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
           + G+W + A VRK+M +R ++K    S IE+ G
Sbjct: 537 SAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDG 569



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 117/286 (40%), Gaps = 56/286 (19%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           +   G V  A  +FD   +   V   +++  +L+N D  +   +F+ M E          
Sbjct: 165 YASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTL 224

Query: 55  ----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                                        RN    +A++D Y K G + +AR++FD +  
Sbjct: 225 VSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQS 284

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEVI 144
            +V +W+++ISGY +A Q  E   LF  M L     N V+  +V+  CA   ++  LE  
Sbjct: 285 RDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACA---VLGALETG 341

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
            W       +R ++T               +   A++  Y   G +  A E F  MP +N
Sbjct: 342 KWVHSYVRRKRLSLTT--------------ILGTALVDFYAKCGCIDDAVEAFESMPVKN 387

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            WTW A+I   A NG    A++L + M ++   P + T   +L +C
Sbjct: 388 SWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMAC 433


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 218/432 (50%), Gaps = 35/432 (8%)

Query: 90  YSWTSLISGYFKARQVDEGR-----RLFDRM------------PLKLKNVVSWTTVVLGC 132
           + W +LI  + +AR    G       +F RM            P  L++  S + + LG 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 133 AHNGLIAK----LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
           + +  I +    ++    T++ +          AR+ F ++P  D+ +WN++I A   AG
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAG 144

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL---LNLMFQSRFMPNETTCTS 245
            +  A  LF +MP+RNV +W+ MI+ Y R G    A+ L   + ++  +   PNE T + 
Sbjct: 145 LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSG 204

Query: 246 ILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
           +L +C   G LE+   AHA   + G   +  L       Y          V  A   F  
Sbjct: 205 VLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG-----SVEKATWVFSN 259

Query: 303 L-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           L   KDV++W+AMI   + HG   +   LF++M+  G +P+ +TF+ V   C H GLV +
Sbjct: 260 LGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSE 319

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           G+     M+  Y   P  +HY C+ D+  RAG++KEA  VV  M P E D +V GALL  
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM-PMEPDVLVWGALLSG 378

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVA 480
            R+HGD+   +   ++LIEL+P++SGAYVL +NV+A RG W++   VR  ME   +KKV 
Sbjct: 379 SRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVP 438

Query: 481 SFSQIEVKGKDH 492
             S IEV G  H
Sbjct: 439 GCSLIEVGGVLH 450



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 19/230 (8%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP    S+I+++    +L  A  +F  +P  Q ++ + +++I+   +AG VD AR +F  
Sbjct: 98  DPFVQTSLISMYSSCGNLGFARQVFDEIP--QPDLPSWNSIINANFQAGLVDMARNLFAV 155

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E NV SW+ +I+GY +  Q  E   LF  M +   N V      +    +G++A    
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM----SGVLAA--- 208

Query: 144 ISWTTMCTGLERNAMTKLAREYF--VQMPNKDIVAWNAMITAYVDAGNMAQASELF-NLM 200
                 C  L      K A  Y     MP  D+V   A+I  Y   G++ +A+ +F NL 
Sbjct: 209 ------CGRLGALEHGKWAHAYIDKCGMP-VDVVLGTALIDMYAKCGSVEKATWVFSNLG 261

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           P ++V  W+AMI   A +G     + L + M      PN  T  ++  +C
Sbjct: 262 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCAC 311


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 261/507 (51%), Gaps = 47/507 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G++ +A K+FD MS+ D V+C++++  + R   L +   +   M +S  + NIV+ + ++
Sbjct: 165 GRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGIL 224

Query: 66  DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRL----FDRMPL 117
            G+ ++G   EA  +F +++      +  + +S++     +  ++ GR++      +  L
Sbjct: 225 SGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLL 284

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           K K V+S              A L++   +    G+      KL  E+  +M    +   
Sbjct: 285 KDKCVIS--------------AMLDMYGKSGHVYGI-----IKLFDEF--EMMETGVC-- 321

Query: 178 NAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           NA IT     G + +A E+F L  ++    NV +W ++I   A+NG +  A++L   M  
Sbjct: 322 NAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQV 381

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           +   PN  T  S+L +C     +      H  A+R+    +  +       Y        
Sbjct: 382 AGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCG---- 437

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             +  +++ F  +  K++V W +++  YS HG   +V  +F  ++++  KPD I+F  +L
Sbjct: 438 -RIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLL 496

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           S C   GL ++G K FN+MS  YG KPR EHYSC+ ++L RAG+++EA  ++ ++ P E 
Sbjct: 497 SACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEI-PFEP 555

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  V GALL +CRL  +V +A+   ++L  L+P + G YVL +N++AA+G W E   +R 
Sbjct: 556 DSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRN 615

Query: 471 KMERR-VKKVASFSQIEVKGKDHTLLA 496
           KME   +KK    S I+VK K +TLLA
Sbjct: 616 KMESLGLKKNPGCSWIQVKNKVYTLLA 642



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 53  ESQRNIVAESAMIDGYVKAGRV---------DEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           ++   I+   A  DGY+ A  +         ++A  +   I +  VYS++SLI    KA+
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLG-----CAHNGLIAKLEVISWTTMCTGLERNAM 158
              +   +F RM     + +   T VL      CA        + I      +GL+ +A 
Sbjct: 96  LFSQSIGVFSRM---FSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 159 TKL--------------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR- 203
            +               AR+ F +M  KD+V  +A++  Y   G + +   + + M +  
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 204 ---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM--- 257
              N+ +WN ++  + R+G    A+ +   M    F P++ T +S+L S  G  EN+   
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSV-GDSENLNMG 271

Query: 258 -LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
              H   I+ G                                   L+ K V+S  AM+ 
Sbjct: 272 RQIHGYVIKQGL----------------------------------LKDKCVIS--AMLD 295

Query: 317 AYSNHGHGFQVFRLFA--RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
            Y   GH + + +LF    M+++G     IT +      S  GLV+K  + F L
Sbjct: 296 MYGKSGHVYGIIKLFDEFEMMETGVCNAYITGL------SRNGLVDKALEMFGL 343



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 91/201 (45%), Gaps = 9/201 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I +Y +      A  +   +P   V++++++I    +      ++ + + MF    +P+
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 240 ETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
                ++   C            H +A   G + +  +  + +  +++   G   D   A
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFV--QGSLFHMYMRCGRMGD---A 170

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+R+  KDVV+ +A++  Y+  G   +V R+ + M KSG +P+ +++ G+LS  + +
Sbjct: 171 RKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRS 230

Query: 357 GLVEKGRKTFNLMSRAYGFKP 377
           G  ++    F  M    GF P
Sbjct: 231 GYHKEAVIMFQKMHH-LGFCP 250



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 138/350 (39%), Gaps = 70/350 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G +G V    KLFDE    +   C + IT   RN  + KA  +F    E   + N+V+ 
Sbjct: 297 YGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSW 356

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEG---------------------------------- 87
           +++I G  + G+  EA ++F E+                                     
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 88  -----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
                +V+  ++LI  Y K  ++   + +F+ MP   KN+V W +++ G + +G   ++ 
Sbjct: 417 VHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP--TKNLVCWNSLMNGYSMHGKAKEVM 474

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
            I  + M T L+                  D +++ ++++A    G   +  + FN+M +
Sbjct: 475 SIFESLMRTRLK-----------------PDFISFTSLLSACGQVGLTDEGWKYFNMMSE 517

Query: 203 R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
                  +  ++ M++   R G    A  L+    +  F P+     ++L SC       
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK---EIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 258 LAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
           LA   A +L   E E   TY    + ++   G   +V+S R   E L  K
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSN-IYAAKGMWTEVDSIRNKMESLGLK 623


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 255/509 (50%), Gaps = 37/509 (7%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ- 55
           T  +  +G  +E+ K +  M Q    P  ++  ++++       L K + +   + ES+ 
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY 261

Query: 56  -RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             ++   +A+   Y+K G   +AR+VF+ +   +V +W ++I G+  + Q++E    F R
Sbjct: 262 HSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHR 321

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +    +  ++TTV+  CA  G +A+           G E +A  + A++  V     
Sbjct: 322 MLEEGVAPDRATYTTVLSACARPGGLAR-----------GKEIHA--RAAKDGLVS---- 364

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+   NA+I  Y  AG+M  A ++F+ MP+R+V +W  ++ RYA       +      M 
Sbjct: 365 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQML 424

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           Q     N+ T   +L +C   +        HA  ++ G   + ++T      Y      F
Sbjct: 425 QQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMY------F 478

Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           +   V  A   FE +  +DVV+W  +I     +G G +  + +  M   G +P+  TFV 
Sbjct: 479 KCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVN 538

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS C    LVE+GR+ F  MS+ YG  P  +HY+C+ DIL RAG ++EA  V+  +P  
Sbjct: 539 VLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPL- 597

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           +    + GALL ACR+H +V + +   E  ++L+P ++G YV  + ++AA G W + A++
Sbjct: 598 KPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKL 657

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           RK M ER VKK    S IE+ G+ H+ +A
Sbjct: 658 RKFMKERGVKKEPGRSWIEIAGEVHSFVA 686



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 163/373 (43%), Gaps = 38/373 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   + ++  Y   G V+EAR++FD+    +V SW  +ISGY       E   LF  M 
Sbjct: 62  NVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 117 LKL--KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            +    +  ++ +++  C+   ++     I    M  GL                   D 
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLA-----------------NDT 164

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              NA+I+ Y   G++  A  +F+ M  R+  +W  +   YA +G    ++K  + M Q 
Sbjct: 165 TVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQE 224

Query: 235 RFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYV----FWDW 287
           R  P+  T  ++L++C  +    +    HA  +   +  +  ++   T  Y+    F D 
Sbjct: 225 RVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKD- 283

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                   AR  FE L  +DV++W  MI  + + G   +    F RML+ G  PD  T+ 
Sbjct: 284 --------AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYT 335

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VLS C+  G + +G++     ++  G        + L ++  +AG +K+A +V  +MP 
Sbjct: 336 TVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP- 393

Query: 408 HERDHVVLGALLG 420
            +RD V    LLG
Sbjct: 394 -KRDVVSWTTLLG 405



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 9/219 (4%)

Query: 150 CTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C   +  A+ K   E+ ++   K ++   N ++  Y   G++ +A +LF+    ++V +W
Sbjct: 38  CVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSW 97

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL-- 266
           N MI  YA  G    A  L  LM Q R  P++ T  SIL++C           + +R+  
Sbjct: 98  NVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVME 157

Query: 267 -GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G   +T++       Y          V  AR  F+ + ++D VSWT +  AY+  G+G 
Sbjct: 158 AGLANDTTVGNALISMYAKCG-----SVRDARRVFDAMASRDEVSWTTLTGAYAESGYGE 212

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
           +  + +  ML+   +P  IT++ VLS C     +EKG++
Sbjct: 213 ESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQ 251



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           VN AR  F++   K VVSW  MI  Y++ G   + F LF  M +   +PD+ TFV +LS 
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CS   ++  GR+    +  A G        + L  +  + G V++A RV   M    RD 
Sbjct: 139 CSSPAVLNWGREIHVRVMEA-GLANDTTVGNALISMYAKCGSVRDARRVFDAMA--SRDE 195

Query: 413 VVLGALLGA 421
           V    L GA
Sbjct: 196 VSWTTLTGA 204


>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
          Length = 493

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 193/353 (54%), Gaps = 10/353 (2%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           +V++WTTM TG       + AR +F  MP K++V+WN M+ AY  AG + +A +LF+ MP
Sbjct: 138 DVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMP 197

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            RN  TW +MI    ++     A+++ + M     +PNE    S +++C  +    + H 
Sbjct: 198 SRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQL--RWMEHG 255

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
             +    E+E +            D +G    +  A   F  +  +++ SW +MI   + 
Sbjct: 256 TWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAM 315

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G   Q   LF +M  +G +P++ITF+G+LS CSH+GLV++GR  F  M   +G +P  E
Sbjct: 316 NGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPE 375

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERL 438
           HY  + D+L R+G V+EA+  V  MP  PH     + GAL GAC++HG+V + + + ++L
Sbjct: 376 HYGLMVDLLGRSGHVREAVDFVKSMPVEPHPG---LWGALAGACKIHGEVELGEEVAKKL 432

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKGKD 491
           IEL+P     Y+L +N++A    WD+ A VR+ ++ R  KV   +   + G D
Sbjct: 433 IELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDR--KVPKGTGNAIVGND 483



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 22/246 (8%)

Query: 10  VKEATKLFDEMSQ--PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           V  A +LF E S+   D V+  +M+T      D+ +A   F AMPE  +N+V+ + M+  
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPE--KNVVSWNTMLGA 179

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y +AG + +ARK+FD +   N  +W S+I+G  ++   +E  R+F  M            
Sbjct: 180 YARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDM------------ 227

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI--VAWNAMITAYV 185
           V  G   N    +  ++S  + CT L           Y  +  N  +  V   A++  Y 
Sbjct: 228 VACGVVPN----EPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYG 283

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G++  A  +F  MP RN+++WN+MI   A NG E  A+ L   M  +   PN+ T   
Sbjct: 284 KCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIG 343

Query: 246 ILTSCE 251
           +L++C 
Sbjct: 344 LLSACS 349


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 226/436 (51%), Gaps = 29/436 (6%)

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LK 120
           A+++ Y K+G + +A+++F+E+ + ++  W+ +I+ Y ++ +  E   LF RM     + 
Sbjct: 277 ALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVP 336

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           N  ++ +V+  CA +  +   + I    +  GL                 N ++   NA+
Sbjct: 337 NNFTFASVLQACASSVSLDLGKQIHSCVLKFGL-----------------NSNVFVSNAI 379

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G +  + +LF  +P RN  TWN +I  Y + G    AM L   M +    P E
Sbjct: 380 MDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTE 439

Query: 241 TTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T +S+L    S   +   +  H+L I+  + ++T +       Y          +N AR
Sbjct: 440 VTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCG-----RINDAR 494

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
           L F+++  +D VSW AMI  YS HG   +   LF  M  +  KP+++TFVGVLS CS+AG
Sbjct: 495 LTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAG 554

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
           L+ KG+  F  MS+ Y  KP  EHY+C+  +L R G+  EAM+++ ++  ++   +V  A
Sbjct: 555 LLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEI-AYQPSVMVWRA 613

Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRV 476
           LLGAC +H  V +     + ++E++P     +VL +N++A  G WD  A VRK M+ ++V
Sbjct: 614 LLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKV 673

Query: 477 KKVASFSQIEVKGKDH 492
           +K    S +E +G  H
Sbjct: 674 RKEPGLSWVENQGVVH 689



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 194/461 (42%), Gaps = 65/461 (14%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-EALFRAMPESQR--------- 56
           +  +++A+KLFDEM Q + +S  ++   + R+H   +A   + R   E            
Sbjct: 83  SNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTL 142

Query: 57  ---------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      +    +A+ID Y   G VD AR VFD+I   ++
Sbjct: 143 LKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDM 202

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
            SWT +++ Y +    +E  +LF++M             ++G   N       + S    
Sbjct: 203 VSWTGMVACYAENCFYEESLQLFNQMR------------IMGYKPNNFTISGALKS---- 246

Query: 150 CTGLERNAMTKLAREYFVQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           C GLE   + K      ++   + D+    A++  Y  +G +  A  LF  MP+ ++  W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIR 265
           + MI RYA++     A+ L   M Q+  +PN  T  S+L +C   +   L    H+  ++
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK 366

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
            G      ++       V+   G   ++ ++   FE L  ++ V+W  +I+ Y   G G 
Sbjct: 367 FGLNSNVFVSNAIM--DVYAKCG---EIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGE 421

Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
           +   LF  ML+   +P E+T+  VL   +    +E G +  +L  +    K      S L
Sbjct: 422 RAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS-L 480

Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            D+  + G++ +A     KM  ++RD V   A++    +HG
Sbjct: 481 IDMYAKCGRINDARLTFDKM--NKRDEVSWNAMICGYSMHG 519



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 184/433 (42%), Gaps = 46/433 (10%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMP---ESQRNIVAESAMIDGYVKAGRVDE 76
           +S  D  S A M+   +RN   P A            +  ++ A++ +++ YV++  + +
Sbjct: 29  LSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQD 88

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           A K+FDE+ + N  S+ +L  GY +  Q  +      R+  +   V  +    L      
Sbjct: 89  ASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTL------ 142

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
            +  L  +    +C  L    + KL         + D     A+I AY   GN+  A  +
Sbjct: 143 -LKLLVSMDLAHLCWTLHA-CVYKLGH-------HADAFVGTALIDAYSVRGNVDVARHV 193

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F+ +  +++ +W  M+  YA N     +++L N M    + PN  T +  L SC G+   
Sbjct: 194 FDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGL--- 250

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL--------DVNSARLAFERLEAKDV 308
                 A  +G          C  H +F   G  L        ++  A+  FE +   D+
Sbjct: 251 -----EAFNVGKSVHGCALKGCYDHDLF--VGIALLELYAKSGEIIDAQRLFEEMPKTDL 303

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           + W+ MI  Y+      +   LF RM ++   P+  TF  VL  C+ +  ++ G++  + 
Sbjct: 304 IPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSC 363

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           + + +G        + + D+  + G+++ +M++  ++P  +R+ V    ++      G V
Sbjct: 364 VLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP--DRNDVTWNTIIV-----GYV 415

Query: 429 RMADYIGERLIEL 441
           ++ D  GER + L
Sbjct: 416 QLGD--GERAMNL 426



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 71/326 (21%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------ 54
           +G++ +A +LF+EM + D +  + MI  + ++    +A  LF  M ++            
Sbjct: 285 SGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASV 344

Query: 55  -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                      N+   +A++D Y K G ++ + K+F+E+ + N 
Sbjct: 345 LQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND 404

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
            +W ++I GY +    +    LF  M      P +    V++++V+   A    +A LE 
Sbjct: 405 VTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTE----VTYSSVLRASAS---LAALE- 456

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                   GL+ +++T         M NKD V  N++I  Y   G +  A   F+ M +R
Sbjct: 457 -------PGLQIHSLT------IKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKR 503

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHA 261
           +  +WNAMI  Y+ +G    A+ L ++M  +   PN+ T   +L++C   G+L    AH 
Sbjct: 504 DEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHF 563

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDW 287
            ++   ++ +      C  HY    W
Sbjct: 564 ESMSKDYDIK-----PCIEHYTCMVW 584



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 127/287 (44%), Gaps = 26/287 (9%)

Query: 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYF-----VQMPNKDIVAWNAMITAYVDAG 188
           H   ++ L+  S+  M   + RN    +A ++       +  + D+ A N ++  YV + 
Sbjct: 25  HQQCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSN 84

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++  AS+LF+ MPQ N  ++  +   Y+R+     A+  +  +F+     N    T++L 
Sbjct: 85  SLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLK 144

Query: 249 SCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
               M    L    HA   +LG   +  +        +   +  + +V+ AR  F+ +  
Sbjct: 145 LLVSMDLAHLCWTLHACVYKLGHHADAFVGTA-----LIDAYSVRGNVDVARHVFDDICC 199

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           KD+VSWT M+  Y+ +    +  +LF +M   G KP+  T  G L  C        G + 
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC-------LGLEA 252

Query: 366 FNLMSRAYG--FKPRAEHY----SCLADILRRAGQVKEAMRVVSKMP 406
           FN+    +G   K   +H       L ++  ++G++ +A R+  +MP
Sbjct: 253 FNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP 299


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/437 (31%), Positives = 221/437 (50%), Gaps = 28/437 (6%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVV 123
           ARK+FD       + +  LI  Y+   Q  E   L++ +              +   +  
Sbjct: 35  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94

Query: 124 SWTTVVLGCAHNGLI-AKLEVISW--TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
             +   L   H+    +  E  S+  TT+ T   +      AR  F +M  +D+  WNAM
Sbjct: 95  FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PN 239
           IT Y   G+M  A ELF+ MP++NV +W  +I  +++NG    A+K+   M + + + PN
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214

Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL---TYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L +C  + E  +   L    G+ +E       Y C      +     +DV  A
Sbjct: 215 HITVVSVLPACANLGELEIGRRLE---GYARENGFFDNIYVCNATIEMYSKCGMIDV--A 269

Query: 297 RLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           +  FE L   +++ SW +MI + + HG   +   LFA+ML+ G KPD +TFVG+L  C H
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
            G+V KG++ F  M   +   P+ EHY C+ D+L R G+++EA  ++  M P + D VV 
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM-PMKPDAVVW 388

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
           G LLGAC  HG+V +A+   E L +L+P++ G  V+ +N++AA  +WD   ++RK M++ 
Sbjct: 389 GTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKE 448

Query: 476 -VKKVASFSQIEVKGKD 491
            + K A +S     G D
Sbjct: 449 TMTKAAGYSYFVEVGVD 465



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR 73
           ++ F    + D   C ++IT + +   L  A  +F  M  S+R++   +AMI GY + G 
Sbjct: 106 SQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEM--SKRDVPVWNAMITGYQRRGD 163

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVV 129
           +  A ++FD +   NV SWT++ISG+ +     E  ++F  M  K K+V    ++  +V+
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCME-KDKSVKPNHITVVSVL 222

Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE--YFVQMPNKDIVAWNAMITAYVDA 187
             CA+ G   +LE+              +   ARE  +F      +I   NA I  Y   
Sbjct: 223 PACANLG---ELEI-----------GRRLEGYARENGFF-----DNIYVCNATIEMYSKC 263

Query: 188 GNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
           G +  A  LF  L  QRN+ +WN+MI   A +G    A+ L   M +    P+  T   +
Sbjct: 264 GMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGL 323

Query: 247 LTSC 250
           L +C
Sbjct: 324 LLAC 327



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)

Query: 13  ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
           A ++FDEMS+ D     +MIT + R  D+  A  LF +MP  ++N+ + + +I G+ + G
Sbjct: 136 ARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP--RKNVTSWTTVISGFSQNG 193

Query: 73  RVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRL--FDRMPLKLKNVVSW 125
              EA K+F     D+  + N  +  S++       +++ GRRL  + R      N+   
Sbjct: 194 NYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVC 253

Query: 126 TTVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQM----P 170
              +   +  G+I            +  + SW +M   L  +     A   F QM     
Sbjct: 254 NATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGE 313

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAM 225
             D V +  ++ A V  G + +  ELF  M + +  +     +  MID   R G    A 
Sbjct: 314 KPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAY 373

Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
            L+  M      P+     ++L +C
Sbjct: 374 DLIKTM---PMKPDAVVWGTLLGAC 395


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 233/479 (48%), Gaps = 67/479 (13%)

Query: 81  FDEIYEGNVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG--- 136
           FD++   N +S+ SL++   + R  + +  RL D MP   +NVVS+ TV+   A +G   
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146

Query: 137 --------------------LIAKLEVISWTTMCTGLER--------------------- 155
                                I +  V+S  + C GL                       
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206

Query: 156 --NAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
             NAM            AR  F QM  +D V+W +MI  Y  A  +  A ++F++MP ++
Sbjct: 207 MANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQD 266

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
              W A+I  + +NG E  A++L   M     +P      S L +C  +   ++A    +
Sbjct: 267 AIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKV--GLVARGKEV 324

Query: 265 RLGFEQETSL---TYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
             GF    S+    +    H    D   +  D+ +A   F+R+  +D++SW +M+  +S+
Sbjct: 325 H-GFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           +G G Q   +F RMLK   +P  +TF+ VL+ CSHAGLV  GR+    M + +G +PRAE
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAE 442

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV--LGALLGACRLHGDVRMADYIGERL 438
           HY+   D L R  Q++EA   +  +            GALLGAC +HG++ +A+ + E L
Sbjct: 443 HYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEAL 502

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
            +L+P +SG YV+ +N+++A G+WD+  QVR  M+ + ++K  ++S IEV+   H  +A
Sbjct: 503 FQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVA 561



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 23/215 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            ++  +AM+D Y KAGRV++AR VFD++   +  SWTS+I+GY +A  +D+  ++FD MP
Sbjct: 204 TVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263

Query: 117 LKLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMT 159
              ++ ++WT ++ G   NG                 +     ++S    C  +   A  
Sbjct: 264 --AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321

Query: 160 KLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
           K    + ++        ++   NA+I  Y   G+M  A  +F+ M +R++ +WN+M+  +
Sbjct: 322 KEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGF 381

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           + NG    ++ +   M +    P   T  ++LT+C
Sbjct: 382 SHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 41/235 (17%)

Query: 7   TGKVKEATKLFDEMSQ----PDP---VSC---ASMITVFLRNHDLPKAEALFRAMPESQR 56
            G+ + A +LF+ M+     P P   VSC    + + +  R  ++     L R++     
Sbjct: 280 NGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV-HGFILRRSIGSDPF 338

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   +A+ID Y K G +  A  VFD + E ++ SW S+++G+    Q  +   +F+RM 
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERM- 397

Query: 117 LKLKN-----VVSWTTVVLGCAHNGLIAK----LEVIS----------WTTMCTGLERNA 157
             LK+      V++  V+  C+H GL++     LE +           +      L RN 
Sbjct: 398 --LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRNR 455

Query: 158 MTKLAREYFVQMPNK----DIVAWNAMITAYVDAGNMAQASE----LFNLMPQRN 204
             + A E+   + +K       +W A++ A    GN+  A E    LF L P+ +
Sbjct: 456 QLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENS 510


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 152/496 (30%), Positives = 239/496 (48%), Gaps = 46/496 (9%)

Query: 40  DLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99
           DL +  A+F    + Q  + A   +      +  +D AR VF ++ E N + W +++   
Sbjct: 34  DLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRIL 93

Query: 100 FKARQ---VDEGRRLFDRMPLKLK---NVVSWTTVVLGCAH----------NGLIAKL-- 141
            +        E   LF  M    +   N  ++ +V+  CA           +GLI K   
Sbjct: 94  AETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGF 153

Query: 142 --------EVISWTTMCTGLE-------RNAMT---KLAREYFVQMPNKDIVAWNAMITA 183
                    ++    MC  +E       +N +        E   +  + ++V WN MI  
Sbjct: 154 HEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDG 213

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
            V  G++  A  LF+ MP R+V +WN MI  YA+NG    A+ L   M  S   PN  T 
Sbjct: 214 QVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTL 273

Query: 244 TSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
            S+L +    G LE     H  A +   E +  L       Y          ++ A   F
Sbjct: 274 VSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCG-----SIDKALQVF 328

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
           E L  ++ ++W+A+I A++ HG        F  M K+G  P+++ ++G+LS CSHAGLVE
Sbjct: 329 ETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVE 388

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +GR  F+ M +  G +PR EHY C+ D+L RAG ++EA  ++  MP  E D V+  ALLG
Sbjct: 389 EGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI-EPDDVIWKALLG 447

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKV 479
           AC++H +++M + + E L+EL P  SG+YV  +N++A+ G W+  A+VR KM+   ++K 
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507

Query: 480 ASFSQIEVKGKDHTLL 495
              S IE+ G  H  L
Sbjct: 508 PGCSWIEIHGIIHEFL 523



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLR--NHDLPKAEALFRAMPESQ 55
           S +   G   EA  LF EM      P+ V+  S++    R    +L K   L+    + +
Sbjct: 243 SGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVE 302

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            + V  SA++D Y K G +D+A +VF+ + + N  +W+++I  +    + ++    F  M
Sbjct: 303 IDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM 362

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAK--------LEVIS-------WTTMCTGLERNAM 158
                  N V++  ++  C+H GL+ +        ++V+        +  M   L R   
Sbjct: 363 GKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGH 422

Query: 159 TKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQ----ASELFNLMPQRNVWTWNAMID 213
            + A E    MP   D V W A++ A     N+      A  L  L P  +  ++ A+ +
Sbjct: 423 LEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH-DSGSYVALSN 481

Query: 214 RYARNG 219
            YA  G
Sbjct: 482 LYASLG 487



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
            TSC+   +    HA+ I+ G  Q+  LT      +  +      D++ AR  F ++   
Sbjct: 26  FTSCKTPRDLKQLHAIFIKTGQIQDP-LTAAEVIKFCAFS---SRDIDYARAVFRQMPEP 81

Query: 307 DVVSWTAM--ILAYSNHGH-GFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKG 362
           +   W  +  ILA +N  H   +   LF+ ML  G  KP+  TF  VL  C+ A  + +G
Sbjct: 82  NCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREG 141

Query: 363 RKTFNLMSRAYGF 375
           ++   L+ + +GF
Sbjct: 142 KQIHGLIVK-FGF 153


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 236/492 (47%), Gaps = 28/492 (5%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAM 64
           +G  KEA  L D +   D V+  S+++      D  +   +  +      +  +   + +
Sbjct: 229 SGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           ID Y + G + + +KVFD +Y  ++ SW S+I  Y    Q      LF  M L       
Sbjct: 289 IDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDC 348

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            T + L      ++++L  I       G        L + +F++    DI   NA++  Y
Sbjct: 349 LTLISLA----SILSQLGEIRACRSVQGF------TLRKGWFLE----DITIGNAVVVMY 394

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ--SRFMPNETT 242
              G +  A  +FN +P ++V +WN +I  YA+NG    A+++ N+M +       N+ T
Sbjct: 395 AKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGT 454

Query: 243 CTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
             S+L +C     + + M  H   ++ G   +  +       Y     G    ++ A   
Sbjct: 455 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMY-----GKCGRLDDALSL 509

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           F ++   + V W  +I  +  HGHG +   LF  ML  G KPD ITFV +LS CSH+GLV
Sbjct: 510 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 569

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
           ++G   F +M   YG  P  +HY C+ D+  RAGQ++ A+  +  MP  + D  + GALL
Sbjct: 570 DEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPL-QPDASIWGALL 628

Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
            ACR+HG+V +     E L E++P   G +VL +N++A+ G+W+   ++R     + ++K
Sbjct: 629 SACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRK 688

Query: 479 VASFSQIEVKGK 490
              +S +EV  K
Sbjct: 689 TPGWSSMEVDNK 700



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 184/417 (44%), Gaps = 37/417 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +++I  Y + G V  AR +FDE+   ++ SW ++ISGY ++    E   L D   
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSD--G 241

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           L+  + V+  +++  C   G   +   I   ++  GLE         E FV         
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE--------SELFVS-------- 285

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N +I  Y + G++    ++F+ M  R++ +WN++I  Y  N     A+ L   M  SR 
Sbjct: 286 -NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRI 344

Query: 237 MPNETT---CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            P+  T     SIL+    +          +R G+  E  +T       ++   G    V
Sbjct: 345 QPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLE-DITIGNAVVVMYAKLGL---V 400

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLS 351
           +SAR  F  L  KDV+SW  +I  Y+ +G   +   ++  M + G     ++ T+V VL 
Sbjct: 401 DSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLP 460

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CS AG + +G K    + +  G        + LAD+  + G++ +A+ +  ++P    +
Sbjct: 461 ACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP--RVN 517

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANVHAA---RGEW 462
            V    L+     HG    A  + + +++  ++P   +   +LSA  H+     GEW
Sbjct: 518 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEW 574



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 125/268 (46%), Gaps = 17/268 (6%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL-MFQSRFMP 238
           ++  Y   GN+A A   F+ +  R+V+ WN MI  Y R G     ++  +L M  S   P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           +  T  S+L +C  + +    H LA++ GF  +  +       +++  +G    V +AR+
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLI--HLYCRYG---AVVNARI 206

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAG 357
            F+ +  +D+ SW AMI  Y   G+  +     A  L  G +  D +T V +LS C+ AG
Sbjct: 207 LFDEMPTRDMGSWNAMISGYCQSGNAKE-----ALTLSDGLRAMDSVTVVSLLSACTEAG 261

Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
              +G  T +  S  +G +      + L D+    G +K+  +V  +M  + RD +   +
Sbjct: 262 DFNRG-VTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM--YVRDLISWNS 318

Query: 418 LLGACRLHGDVRMADYIGE--RLIELQP 443
           ++ A  L+     A  + +  RL  +QP
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQP 346



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 154/393 (39%), Gaps = 59/393 (15%)

Query: 33  TVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           T+F    +L  A+ L   +  S   +N+   + +++ Y   G V  AR  FD I+  +VY
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVY 118

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVIS-- 145
           +W  +ISGY +A    E  R F    L      +  ++ +V+  C +     K+  ++  
Sbjct: 119 AWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALK 178

Query: 146 ----WTTMCTG-----LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
               W             R      AR  F +MP +D+ +WNAMI+ Y  +GN  +A   
Sbjct: 179 FGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEA--- 235

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GM 253
                                          L L    R M +  T  S+L++C      
Sbjct: 236 -------------------------------LTLSDGLRAM-DSVTVVSLLSACTEAGDF 263

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
              +  H+ +I+ G E E  ++ K    Y   ++G    +   +  F+R+  +D++SW +
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYA--EFG---SLKDCQKVFDRMYVRDLISWNS 318

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I AY  +    +   LF  M  S  +PD +T + + S  S  G +   R       R  
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            F       + +  +  + G V  A  V + +P
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 159/548 (29%), Positives = 265/548 (48%), Gaps = 73/548 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRN----------------------------- 38
           G++  A K+FDEMS+ + VS  SMI  + R                              
Sbjct: 183 GELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCV 242

Query: 39  -------HDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                   DL   E ++  +  S  + N +  SA++D Y+K   +D A+++FDE    N+
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTT------VVLGCAHNGL 137
               ++ S Y +     E   +F+ M      P ++  + + ++      ++ G + +G 
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362

Query: 138 IAKLEVISWTTMCTGLERNAM----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
           + +    SW  +C  L    M       A   F +M NK +V WN+++  YV+ G +  A
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSRFMPNETTCTSILTSCEG 252
            E F  MP++N+ +WN +I    +      A+++  ++  Q     +  T  SI ++C  
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGH 482

Query: 253 MLENMLAHAL-------AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +    LA  +        I+L     T+L        +F   G   D  SA   F  L  
Sbjct: 483 LGALDLAKWIYYYIEKNGIQLDVRLGTTLV------DMFSRCG---DPESAMSIFNSLTN 533

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +DV +WTA I A +  G+  +   LF  M++ G KPD + FVG L+ CSH GLV++G++ 
Sbjct: 534 RDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEI 593

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F  M + +G  P   HY C+ D+L RAG ++EA++++  MP    D V+  +LL ACR+ 
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND-VIWNSLLAACRVQ 652

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
           G+V MA Y  E++  L P  +G+YVL +NV+A+ G W++ A+VR  M E+ ++K    S 
Sbjct: 653 GNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSS 712

Query: 485 IEVKGKDH 492
           I+++GK H
Sbjct: 713 IQIRGKTH 720



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 160/384 (41%), Gaps = 53/384 (13%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++  +++++  Y + G +D ARKVFDE+ E NV SWTS+I GY +     +   LF RM
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 116 PLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
                   N V+   V+  C      AKLE +          RN+  ++           
Sbjct: 227 VRDEEVTPNSVTMVCVISAC------AKLEDLETGEKVYAFIRNSGIEV----------N 270

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D++  +A++  Y+    +  A  LF+     N+   NAM   Y R G    A+ + NLM 
Sbjct: 271 DLMV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 233 QSRFMPNETTCTSILTSCEGMLENML----AHALAIRLGFEQETSLTYKCT-----CH-- 281
            S   P+  +  S ++SC   L N+L     H   +R GFE   ++          CH  
Sbjct: 330 DSGVRPDRISMLSAISSCS-QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388

Query: 282 --------------YVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
                          V W+     +    +V++A   FE +  K++VSW  +I       
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGS 448

Query: 323 HGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
              +   +F  M  + G   D +T + + S C H G ++  +  +  + +  G +     
Sbjct: 449 LFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDVRL 507

Query: 382 YSCLADILRRAGQVKEAMRVVSKM 405
            + L D+  R G  + AM + + +
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSL 531



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 239 NETTCT----SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           N++ CT    S L +C+ + E  + H    + G + + S   K        + G +  ++
Sbjct: 27  NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSC--ELGTRESLS 84

Query: 295 SARLAFERLEAKDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            A+  FE  E+      + ++I  Y++ G   +   LF RM+ SG  PD+ TF   LS C
Sbjct: 85  FAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSAC 144

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           + +     G +   L+ +  G+       + L       G++  A +V  +M
Sbjct: 145 AKSRAKGNGIQIHGLIVK-MGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 228/467 (48%), Gaps = 34/467 (7%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++     +ID Y K   +D+ARK+ + + + +V SWTS+I+GY +    +E    F  
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMPNK 172
           M    ++   W               + + S  + C G++  R  +   AR Y V     
Sbjct: 438 M----QDCGVWPD------------NIGLASAASACAGIKAMRQGLQIHARVY-VSGYAA 480

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           DI  WN ++  Y   G   +A  LF  +  ++  TWN +I  + ++     A+ +   M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 233 QSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           Q+    N  T  S +++   +    +    H  A++ G   ET +       Y     G 
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLY-----GK 595

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A++ F  +  ++ VSW  +I + S HG G +   LF +M + G KP+++TF+GV
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGV 655

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ CSH GLVE+G   F  MS  YG  P  +HY+C+ DIL RAGQ+  A R V +MP   
Sbjct: 656 LAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI-T 714

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + ++   LL AC++H ++ + +   + L+EL+P  S +YVL +N +A  G+W    QVR
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVR 774

Query: 470 KKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
           K M +R ++K    S IEVK   H       L P+ +  Y  L E++
Sbjct: 775 KMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 112/510 (21%), Positives = 212/510 (41%), Gaps = 65/510 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ-- 55
           S +   G  KEA +L+ +M      P P   +S+++   +     +   +   + +    
Sbjct: 117 SGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFC 176

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
                 +A+I  Y+  G    A +VF ++   +  ++ +LISG+ +    +   ++FD M
Sbjct: 177 SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM 236

Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
            L     + V+  +++  CA  G + K + +    +  G+  + +T+             
Sbjct: 237 QLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE------------- 283

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
                +++  YV  G++  A ++FNL  + NV  WN M+  Y +      + ++   M  
Sbjct: 284 ----GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 234 SRFMPNETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQETSLT---------YKCTCH 281
           +   PN+ T   IL   +C G +E     H+L+I+ GFE +  ++         Y+C   
Sbjct: 340 TGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC--- 396

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
                      ++ AR   E LE +DVVSWT+MI  Y  H    +    F  M   G  P
Sbjct: 397 -----------LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY--GFKPRAEHYSCLADILRRAGQVKEAM 399
           D I      S C  AG ++  R+   + +R Y  G+      ++ L ++  R G+ +EA 
Sbjct: 446 DNIGLASAASAC--AG-IKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            +  ++    +D +    L+      G  R+  Y    ++ ++ S +GA        +A 
Sbjct: 503 SLFREID--HKDEITWNGLISG---FGQSRL--YEQALMVFMKMSQAGAKYNVFTFISAI 555

Query: 460 GEWDEFAQVR--KKMERRVKKVASFSQIEV 487
                 A ++  K++  R  K    S+ EV
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEV 585



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 152/353 (43%), Gaps = 40/353 (11%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +ID Y K G V +AR+VF E+   +  SW +++SGY +     E  RL+ +M        
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQM-------- 135

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR-EYFVQMPNKDIVAWNAMIT 182
            WT V+             + S  + CT  +  A  ++   + + Q    +    NA+I 
Sbjct: 136 HWTAVI--------PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIA 187

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y+  G+   A  +F  M   +  T+N +I  +A+ G    A+++ + M  S   P+  T
Sbjct: 188 LYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 243 CTSILTSCEGMLE-----NMLAHALAIRLGFEQET-----SLTYKCTCHYVFWDWGFQLD 292
             S+L +C  + +      + ++ L   + F+  T      L  KC             D
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCG------------D 295

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           + +A   F   +  +VV W  M++AY       + F +F +M  +G  P++ T+  +L  
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRT 355

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           C+  G +E G +  +L S   GF+        L D+  +   + +A +++  +
Sbjct: 356 CTCTGQIELGEQIHSL-SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEML 407



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 12/250 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D +  N +I  Y   G + QA ++F  +  R+  +W AM+  YA+ G    A +L + M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMH 136

Query: 233 QSRFMPNETTCTSILTSC-EGML--ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
            +  +P     +S+L++C +G L  +  + HA   +  F  ET +       Y+ +   F
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG-SF 195

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
           +L    A   F  +   D V++  +I  ++  GHG    ++F  M  SG +PD +T   +
Sbjct: 196 KL----AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+ C+  G ++KG++  + + +A G          L D+  + G ++ A  + +     +
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKA-GMSFDYITEGSLLDLYVKCGDIETAHDIFN---LGD 307

Query: 410 RDHVVLGALL 419
           R +VVL  L+
Sbjct: 308 RTNVVLWNLM 317


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 216/427 (50%), Gaps = 33/427 (7%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           AR +       +++  T+L+  Y KA + D  R  FD  P +  +V     ++      G
Sbjct: 63  ARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRR--DVFLCNVMLAAYVTRG 120

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
            +A+                     AR  F  M  +D+V+WN MI  Y   G +  A E+
Sbjct: 121 EVAE---------------------ARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREV 159

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           FN M  R+ ++W++M+  Y +      A++L   M  +   P+ TT  S+L++C  M   
Sbjct: 160 FNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGAL 219

Query: 257 MLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            +    H      G E +  L       Y         D+ ++   F  +  KDV++W++
Sbjct: 220 AVGAEVHQFVESNGVELDVKLGTALIDMYAKCG-----DIENSVRVFHSMPVKDVLTWSS 274

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           MI+  +NHG G     LF+RML  G +P+E+TF+GVL  C+H GLV  G+K F+ MS  +
Sbjct: 275 MIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVH 334

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
           G  P+ +HY C+ D+L R+G ++EA +++  M P E D V+  ALLGACR++ +V +A+ 
Sbjct: 335 GVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM-PFEPDAVIWRALLGACRIYKNVEVAEE 393

Query: 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDH 492
              +L  L P + G YVL +N++A    W+  A++R+ + R R++++   S IE +   H
Sbjct: 394 AMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIH 453

Query: 493 TLLAPMR 499
             ++  R
Sbjct: 454 EFISGDR 460



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 52/245 (21%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G+V EA ++FD M + D VS  +M                                 I G
Sbjct: 120 GEVAEARRVFDGMRERDMVSWNTM---------------------------------IHG 146

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN--VVSW 125
           Y   G VD AR+VF+ + + + +SW+S++S Y K R+  +   L+  M     N    + 
Sbjct: 147 YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTM 206

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
            +V+  C+  G +A    +       G+E                  D+    A+I  Y 
Sbjct: 207 VSVLSACSDMGALAVGAEVHQFVESNGVE-----------------LDVKLGTALIDMYA 249

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G++  +  +F+ MP ++V TW++MI   A +G    A+ L + M      PNE T   
Sbjct: 250 KCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIG 309

Query: 246 ILTSC 250
           +L SC
Sbjct: 310 VLISC 314


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 231/454 (50%), Gaps = 28/454 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
           +I+  ++   +  A  +FD+I + +VY +   I  +           L+ +M  +    N
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPN 81

Query: 122 VVSWTTVVLGCA-----------HNGLIAK---LEVISWTTMCTGLERNAMTKLAREYFV 167
             S+T +   CA           H+         ++ + T +     +  M + AR+ F 
Sbjct: 82  QYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFD 141

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +MP +DI  WN++I  Y  +G+M  A ELFN MP RNV +W A+I  YA+NG    A+++
Sbjct: 142 EMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEM 201

Query: 228 -LNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYV 283
            + L  +    PNE +  S+L +C   G L+      A A   GF +   ++     + V
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVS-----NAV 256

Query: 284 FWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                   ++  A+  F+ + +K ++ SW  MI+  + HG      +L+ +ML    +PD
Sbjct: 257 LELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           ++TFVG+L  C+H G+V +GR+ F  M   +   P+ EHY CL D+L RAG+++EA  ++
Sbjct: 317 DVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
             M P   D V+ G LLGAC  HG+V + +   E L +L+P + G YV+ +N++A  G+W
Sbjct: 377 QNM-PMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDW 435

Query: 463 DEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLL 495
              A++RK M+   + K A +S IEV    H  +
Sbjct: 436 SGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFI 469



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 55/349 (15%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVF----LRNHDLPKAEALFRAMPESQRNIVA 60
           GC+      T LF         +CAS+  V+    L +H      A          ++ A
Sbjct: 77  GCSPNQYSFTFLFP--------ACASLFNVYPGQMLHSHFCKSGFA---------SDMFA 119

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++D Y K G +  AR++FDE+   ++ +W SLI+GY ++  ++    LF++MP  ++
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP--VR 177

Query: 121 NVVSWTTVVLGCAHNGLIAK------------------LEVISWTTMCTGLERNAMTKLA 162
           NV+SWT ++ G A NG  AK                  + + S    C+ L    + K  
Sbjct: 178 NVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRI 237

Query: 163 REY-----FVQMPNKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYA 216
             Y     F     K+    NA++  +   GN+ +A ++F+ +  +RN+ +WN MI   A
Sbjct: 238 EAYARNNGFF----KNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLA 293

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276
            +G    A++L + M   +  P++ T   +L +C      M+A    +    E +  +  
Sbjct: 294 VHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTH--GGMVAEGRQLFESMESKFQVAP 351

Query: 277 KCTCHYVFWD-WGFQLDVNSARLAFERLE-AKDVVSWTAMILAYSNHGH 323
           K   +    D  G   ++  A    + +  A D V W  ++ A S HG+
Sbjct: 352 KLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGN 400


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 225/442 (50%), Gaps = 35/442 (7%)

Query: 57   NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            N+   + ++  YV    + +A  +FDE+ + N  SW+ +I G+ K  +  +  + F  + 
Sbjct: 1114 NLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKEL- 1172

Query: 117  LKLKNVV-----SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
              ++N V     +   V+  C     +    +I    +  GL  +        +FV    
Sbjct: 1173 --IRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLD--------HFV---- 1218

Query: 172  KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
                   A++  Y     +  A  LF++MP +++ TW  MI  YA  G    ++ L + +
Sbjct: 1219 -----CAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHL 1273

Query: 232  FQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
             +  F+P++    SI+ +C     M +    H    R  F  +  L       Y      
Sbjct: 1274 REEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCG-- 1331

Query: 289  FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               DV+SAR  F+ +  K+V+SW+AMI AY  HG G +   LF  ML SG  P+ ITFV 
Sbjct: 1332 ---DVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVS 1388

Query: 349  VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            +L  CSHAGLVE G    +LM  ++G +P  +H++C+ D+L RAGQ+ EA R +  M   
Sbjct: 1389 LLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTV- 1447

Query: 409  ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
            E+D  +  +LLGACR+H  + +A+   + L+ELQP + G Y+L +N++A  G+W + A++
Sbjct: 1448 EKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANAGQWKDVAKI 1507

Query: 469  RKKM-ERRVKKVASFSQIEVKG 489
            R  M +R++KK+  ++ IE+K 
Sbjct: 1508 RDLMTKRKLKKIPGYTWIELKS 1529



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 63/287 (21%)

Query: 31   MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV- 89
            ++ V++ +  L  A ALF  MP  Q+N V+ S MI G+VK G   +  K F E+    V 
Sbjct: 1121 LLYVYVHHKCLTDAYALFDEMP--QKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQ 1178

Query: 90   --------------------------------------YSWTSLISGYFKARQVDEGRRL 111
                                                  +   +L+  Y K + +++ + L
Sbjct: 1179 PDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLL 1238

Query: 112  FDRMPLKLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLE 154
            FD MP K  ++V+WT ++ G A  G                 +  K+ ++S    C  L 
Sbjct: 1239 FDVMPSK--DLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLG 1296

Query: 155  RNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
                 +   EY  +   + D++   AMI  Y   G++  A E+F+ M  +NV +W+AMI 
Sbjct: 1297 AMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIA 1356

Query: 214  RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
             Y  +G    A++L  +M  S  +PN  T  S+L +C   G++E+ L
Sbjct: 1357 AYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGL 1403



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 13/204 (6%)

Query: 220  PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279
            P    +K+ N  F     PN     S L +C+ + +    HAL I        +LT    
Sbjct: 1064 PVTQILKISNPDFSFFMDPN--CLISTLLNCKNICQIKQLHAL-ITTNSVLYNNLTVANK 1120

Query: 280  CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
              YV+       D   A   F+ +  K+ VSW+ MI  +   G   Q ++ F  ++++G 
Sbjct: 1121 LLYVYVHHKCLTD---AYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGV 1177

Query: 340  KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKE 397
            +PD  T   V+  C     ++ GR   + +   YG     +H+ C  L D+  +   +++
Sbjct: 1178 QPDNYTLPFVIKACRDTVALDMGR-LIHCVVLKYGL--HLDHFVCAALVDMYAKCKVIED 1234

Query: 398  AMRVVSKMPPHERDHVVLGALLGA 421
            A  +   MP   +D V    ++G 
Sbjct: 1235 AKLLFDVMPS--KDLVTWTVMIGG 1256


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 230/484 (47%), Gaps = 53/484 (10%)

Query: 37  RNHDL----PKAEALFRAMP------ESQRNIVAE---------SAMIDGYVKAGRVDEA 77
           RN D     P  EAL R+ P      +   +I+           + +I     AG +  A
Sbjct: 19  RNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYA 78

Query: 78  RKVFDEIYEGNVYSWTSLIS-----GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
           R++F  +   + + + SL+      G+     +   R LF   P   ++  ++T+V+  C
Sbjct: 79  RRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP---QSNYTFTSVIKAC 135

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           A    +   + I    M  G                    D+    A+I  Y  A +M  
Sbjct: 136 ADLSALRLGKEIHSHVMVCGY-----------------GSDMYVQAALIALYAKASDMKV 178

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE- 251
           A ++F+ MPQR +  WN++I  Y +NG    ++ L +LM +S F P+  T  S+L+SC  
Sbjct: 179 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 238

Query: 252 -GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            G L+     H  A   GF+    L       Y         +V+ AR  F+ ++ ++VV
Sbjct: 239 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG-----NVSKAREVFDSMKERNVV 293

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +WTAMI  Y  HG+G Q   LF  M   G +P+ ITFV VLS C+H+GL++ GR+ F+ M
Sbjct: 294 TWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 353

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
             AYG  P  EH  C+ D+  RAG + +A + + K  P E    V  ++LGACR+H +  
Sbjct: 354 KEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFD 413

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +   + E ++ ++P + G YV+ +N++A  G  D    VR  M  RR+KK   +S IE+ 
Sbjct: 414 LGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEIN 473

Query: 489 GKDH 492
            K +
Sbjct: 474 RKTY 477



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY---- 85
           S+I ++ R  ++ KA  +F +M E  RN+V  +AMI GY   G   +A ++F E+     
Sbjct: 266 SLINMYTRCGNVSKAREVFDSMKE--RNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGP 323

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             N  ++ +++S    +  +D+GRR+F  M
Sbjct: 324 RPNNITFVAVLSACAHSGLIDDGRRVFSSM 353


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 235/455 (51%), Gaps = 36/455 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +++I  Y   G +  AR VFDE+   +V SW SLI GY +  +  +   LF  M 
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180

Query: 117 LK--LKNVVSWTTVVLGCAHNG--------------LIAKLEVISWTTMCTGLERNAMTK 160
            +    + V+   VV  C   G                 +++V    T+     R    +
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            A + F  M  ++IV  NAMI AY    ++  A ++F+ +P++++ +W++MI  Y++   
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLT 275
              A+++   M +++  P+     S+++SC        AH  A+ LG     + +  ++ 
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSC--------AHLGALDLGKWVHEYVRRNNIK 352

Query: 276 YKCTCHYVFWDWGFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
                     D    +   SA+ A   F+ ++ KD +SW ++I+  +N+G   +   LF 
Sbjct: 353 ADTIMENSLID--MYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQ 410

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML  G +P+ +TF+GVL  C++A LVE+G   F  M R Y  +P+ +HY C+ D+L RA
Sbjct: 411 AMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRA 470

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           GQ+++A+R +++MP  + D VV   LLG+C  HGDV +A+ + ++L EL+PS+SG Y L 
Sbjct: 471 GQLEKALRFITEMPI-DPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLL 529

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           +N +A+   W E   VR+ M +  V+K    S +E
Sbjct: 530 SNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 27/298 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  F R   L  AE +F  M    RNIV  +AMI  Y K   +  ARK+FD+I + ++
Sbjct: 228 TLVDYFGRRGQLQSAEKVFFNM--KVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 285

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW+S+ISGY +A    +   +F +M   K+K + +   +VV  CAH G    L++  W 
Sbjct: 286 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLG---ALDLGKWV 342

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                + RN +              D +  N++I  Y+  G+  +A ++F  M +++  +
Sbjct: 343 H--EYVRRNNI------------KADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLS 388

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG--MLENMLAHALAIR 265
           WN++I   A NG E  ++ L   M    F PN  T   +L +C    ++E  L H  +++
Sbjct: 389 WNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMK 448

Query: 266 LGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
             +  E  +  Y C    +      QL+  + R   E     D V W  ++ + + HG
Sbjct: 449 RLYSLEPQMKHYGCVVDLL--GRAGQLE-KALRFITEMPIDPDPVVWRILLGSCNTHG 503



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 43/198 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G+++ A K+F  M   + V+  +MI  + +  D+  A  +F  +P  ++++++ S+
Sbjct: 233 FGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP--KKDLISWSS 290

Query: 64  MIDGYVKAGRVDEARKVF----------DEIYEGNVYS------------W--------- 92
           MI GY +A    +A ++F          D I   +V S            W         
Sbjct: 291 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 350

Query: 93  --------TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
                    SLI  Y K     E  ++F  M  K K+ +SW ++++G A+NG   +   +
Sbjct: 351 IKADTIMENSLIDMYMKCGSAKEALQVFKEM--KEKDTLSWNSIIIGLANNGFEKESLNL 408

Query: 145 SWTTMCTGLERNAMTKLA 162
               +  G   N +T L 
Sbjct: 409 FQAMLTEGFRPNGVTFLG 426


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 195/362 (53%), Gaps = 19/362 (5%)

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            AR+ F ++   D+ +WNA+I A   AG +  A +LF+ MP++NV +W+ MI  Y   G 
Sbjct: 113 FARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172

Query: 221 EGAAMKL---LNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSL 274
             AA+ L   L  +  S+  PNE T +S+L++C   G L++    HA   + G + +  L
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
                  Y          +  A+  F+ L   KDV++W+AMI A+S HG   +   LFAR
Sbjct: 233 GTSLIDMYAKCG-----SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFAR 287

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M+  G +P+ +TFV VL  C H GLV +G + F  M   YG  P  +HY C+ D+  RAG
Sbjct: 288 MVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAG 347

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
           ++++A  VV  M P E D ++ GALL   R+HGDV   +    +L+EL P++S AYVL +
Sbjct: 348 RIEDAWNVVKSM-PMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLS 406

Query: 454 NVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           NV+A  G W E   +R  ME R +KK+   S +EV G      A     P     YV+L 
Sbjct: 407 NVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLD 466

Query: 508 EV 509
           E+
Sbjct: 467 EI 468



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 24/212 (11%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++++I+ Y   G    AR+ FDEI + ++ SW ++I    KA  +   R+LFD+MP   K
Sbjct: 98  QTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMP--EK 155

Query: 121 NVVSWTTVVLGCAHNG-------LIAKLEVI-------------SWTTMCTGLERNAMTK 160
           NV+SW+ ++ G    G       L   L+ +             S  + C  L      K
Sbjct: 156 NVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGK 215

Query: 161 LAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELF-NLMPQRNVWTWNAMIDRYARN 218
               Y  +   K D+V   ++I  Y   G++ +A  +F NL P+++V  W+AMI  ++ +
Sbjct: 216 WVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMH 275

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           G     ++L   M      PN  T  ++L +C
Sbjct: 276 GLSEECLELFARMVNDGVRPNAVTFVAVLCAC 307



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 31/247 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +   G    A + FDE++QPD  S  ++I    +   +  A  LF  MPE  +N+++ 
Sbjct: 103 NMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPE--KNVISW 160

Query: 62  SAMIDGYVKAGRVDEARKVFDEI--YEG-----NVYSWTSLISGYFKARQVDEGRRL--- 111
           S MI GYV  G    A  +F  +   EG     N ++ +S++S   +   +  G+ +   
Sbjct: 161 SCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAY 220

Query: 112 FDRMPLKLKNVVSWTTVVL----------GCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
            D+  +K+  V+  + + +           C  + L  + +V++W+ M T    + +++ 
Sbjct: 221 IDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEE 280

Query: 162 AREYFVQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMPQRN-----VWTWNAMI 212
             E F +M N  +    V + A++ A V  G +++ +E F  M         +  +  M+
Sbjct: 281 CLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMV 340

Query: 213 DRYARNG 219
           D Y+R G
Sbjct: 341 DLYSRAG 347



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 74/276 (26%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------PES---- 54
           G +  A KLFD+M + + +S + MI  ++   +   A +LFR++         P      
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199

Query: 55  ---------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEI-YE 86
                                      + ++V  +++ID Y K G ++ A+ +FD +  E
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVI 144
            +V +W+++I+ +      +E   LF RM       N V++  V+  C H GL+++    
Sbjct: 260 KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSE---- 315

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDAGNMAQASELFNL 199
                              EYF +M N+  V+     +  M+  Y  AG +  A  +   
Sbjct: 316 -----------------GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKS 358

Query: 200 MP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
           MP + +V  W A+++    +G     E A  KLL L
Sbjct: 359 MPMEPDVMIWGALLNGARIHGDVETCEIAITKLLEL 394


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 211/414 (50%), Gaps = 46/414 (11%)

Query: 110 RLFDRMP------LKLKNVVSWTTVVLGCAHNGLIAKLE----------VISWTTMCTGL 153
           RLFD +P        LK  +  + VV G   +GL  KL           +++   +C G 
Sbjct: 2   RLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC-GE 60

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
             +AM       F +MP +D V WN +I      G++  A   F  MP +NV +W +MI 
Sbjct: 61  MGDAML-----LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMIS 115

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQ 270
            + + G    A+ L   +      PNE T  S+L +C  + +     + H  + + GF++
Sbjct: 116 GFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR 175

Query: 271 ET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
                     +  KC C            + +AR  F  +E + VVSW+AMI   + HG 
Sbjct: 176 NVHVCNTLIDMYVKCGC------------LENARRVFYEMEERTVVSWSAMIAGLAMHGQ 223

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
             +   LF+ M+K G KP+ +TF+G+L  CSH GL+++GR+ F  M+  YG  P+ EHY 
Sbjct: 224 AEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYG 283

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+  RAG ++EA   +  MP  + + VV GALLG C++H ++ +A+   + L EL P
Sbjct: 284 CVVDLFSRAGLLEEAHEFILSMPI-KPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDP 342

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
            + G YV+ +N++A    W++ A+VRK M +R VKK + +S I V G  H  +A
Sbjct: 343 LNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVA 396



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 26/260 (10%)

Query: 15  KLFDEMSQPDPVSCASMITVFLRNHDLPKAE---ALFRAMPESQRNIVAESAMIDGYVKA 71
           +LFD +  PD  +C+ ++   L+  D+   +    LF+ +     N+  ++ +++ Y   
Sbjct: 2   RLFDVL--PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGS-NLFLQNMILNLYGLC 58

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG 131
           G + +A  +F+++ + +  +W  +I+   K   +D     F RMP   KNV SWT+++ G
Sbjct: 59  GEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMP--NKNVRSWTSMISG 116

Query: 132 CAHNG-------LIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNK-D 173
               G       L  KLE          V+S    C  L    + ++  EY  +   K +
Sbjct: 117 FVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRN 176

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   N +I  YV  G +  A  +F  M +R V +W+AMI   A +G    A+ L + M +
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236

Query: 234 SRFMPNETTCTSILTSCEGM 253
               PN  T   +L +C  M
Sbjct: 237 LGVKPNGVTFIGLLHACSHM 256



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 26/219 (11%)

Query: 2   SQFGCTGKVKEATKLF----DEMSQPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQ 55
           S F   GK  EA  LF    DE  +P+ V+  S++     L + DL +    +      +
Sbjct: 115 SGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK 174

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           RN+   + +ID YVK G ++ AR+VF E+ E  V SW+++I+G     Q +E   LF  M
Sbjct: 175 RNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234

Query: 116 PLKL---KNVVSWTTVVLGCAHNGLI-----------AKLEVIS----WTTMCTGLERNA 157
            +KL    N V++  ++  C+H GLI           A   VI     +  +     R  
Sbjct: 235 -IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAG 293

Query: 158 MTKLAREYFVQMPNK-DIVAWNAMITAYVDAGNMAQASE 195
           + + A E+ + MP K + V W A++       N+  A E
Sbjct: 294 LLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEE 332


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 261/539 (48%), Gaps = 44/539 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ EA ++F+E+ +PD V+ +SM++ F +N    +A   FR M  +         +I  
Sbjct: 91  GRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITL 150

Query: 68  YVKAGRVDEARK-------VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
                ++  +R        V    +  ++    SL++ Y K+R   E   LF  M  K  
Sbjct: 151 VSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEK-- 208

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-------- 172
           +V+SW+TV+     NG  A+   +    +  G E N  T L         N         
Sbjct: 209 DVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTH 268

Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                     ++    A++  Y+   +  +A  +F+ +P+++V +W A+I  +  NG   
Sbjct: 269 ELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAH 328

Query: 223 AAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYKC 278
            +++  ++M  ++   P+      +L SC   G L+     H+  I+ GF+    +    
Sbjct: 329 RSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASL 388

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
              Y          + +A   F  +  KD V WT++I  Y  HG G +    F  M++S 
Sbjct: 389 VELYSRCG-----SLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSS 443

Query: 339 -TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
             KP+E+TF+ +LS CSHAGL+ +G + F LM   Y   P  EHY+ L D+L R G++  
Sbjct: 444 EVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDT 503

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+ +  +MP       +LG LLGACR+H +  MA+ + ++L EL+ + +G Y+L +N++ 
Sbjct: 504 AIEITKRMPFSPTPQ-ILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYMLMSNMYG 562

Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
            +GEW+   ++R  +++R +KK  + S IE++ K H  +A     P +E  Y +LKE+D
Sbjct: 563 VKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVADDDLHPEKEPVYGLLKELD 621



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 28/370 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S++I  YVK GR+ EA ++F+E+ + ++ +W+S++SG+ K     +    F RM      
Sbjct: 81  SSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRM------ 134

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
                      A +    ++ +I+  + CT L  + + +    + ++   + D+   N++
Sbjct: 135 ---------ATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSL 185

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y  +    +A  LF +M +++V +W+ +I  Y +NG    A+++ N M      PN 
Sbjct: 186 LNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNV 245

Query: 241 TTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T   +L +C     + +    H LAIR G E E  ++      Y+            A 
Sbjct: 246 ATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC-----FSPEEAY 300

Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHA 356
             F R+  KDVVSW A+I  ++ +G   +    F+ M L++ T+PD I  + VL  CS  
Sbjct: 301 AVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSEL 360

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           G +++  + F+     YGF       + L ++  R G +  A +V +++    +D VV  
Sbjct: 361 GFLKQA-ECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIAL--KDTVVWT 417

Query: 417 ALLGACRLHG 426
           +L+    +HG
Sbjct: 418 SLITGYGIHG 427



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 13/283 (4%)

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---N 256
           M +R ++ WN ++   +R+      M   + MF+    P+  T    L +C  + E    
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
            + H   ++      + L    +  Y++   G    +  A   F  LE  D+V+W++M+ 
Sbjct: 61  EMIHGF-LKKNVTLGSDLYVGSSLIYMYVKCG---RMTEALRMFNELEKPDIVTWSSMVS 116

Query: 317 AYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375
            +  +G  +Q    F RM   S   PD +T + ++S C+       GR     + R  GF
Sbjct: 117 GFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRR-GF 175

Query: 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
                  + L +   ++   KEA+ +   M   E+D +    ++     +G    A  + 
Sbjct: 176 SNDLSLVNSLLNCYAKSRAFKEAVNLFKMMA--EKDVISWSTVIACYVQNGAAAEALRVF 233

Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478
             +I+     + A VL   V  A    ++  Q RK  E  ++K
Sbjct: 234 NEMIDDGTEPNVATVLC--VLQACAAANDLEQGRKTHELAIRK 274


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 229/458 (50%), Gaps = 48/458 (10%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSW 125
           Y K G+ D   ++F+++   +V SWT+LIS Y +  + +     F RM       N  ++
Sbjct: 270 YNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTF 329

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYV 185
             V+  CA+       E I    +  GL  NA++               VA N++IT Y 
Sbjct: 330 AAVISSCANLAAAKWGEQIHGHVLRLGL-VNALS---------------VA-NSIITLYS 372

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
             G +  AS +F+ + ++++ +W+ +I  Y++ G    A   L+ M +    PNE   +S
Sbjct: 373 KCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSS 432

Query: 246 ILTSCEGML---ENMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNS 295
           +L+ C  M    +    HA  + +G + E        S+  KC              V  
Sbjct: 433 VLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCG------------SVQE 480

Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
           A   F  ++  D++SWTAMI  Y+ HG+  +   LF ++   G KPD + F+GVL+ C+H
Sbjct: 481 ASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNH 540

Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
           AG+V+ G   F LM+  Y   P  EHY CL D+L RAG++ EA  ++  MP H  D VV 
Sbjct: 541 AGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDD-VVW 599

Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
             LL ACR+HGDV    +  E+L++L P+S+G ++  AN++AA+G W E A +RK M+ +
Sbjct: 600 STLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSK 659

Query: 476 -VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
            V K   +S + V  + +  +A     P  E    VLK
Sbjct: 660 GVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLK 697



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 208/475 (43%), Gaps = 58/475 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQRNIVAESAM 64
           G++ +A  +FD+M+  D +S  ++I  ++   D  +A  LF  M   P  QR    +  M
Sbjct: 71  GQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQR----DQFM 126

Query: 65  IDGYVKAGRVDEARKVFDEIYEG---------NVYSWTSLISGYFKARQVDEGRRLFDRM 115
           I   +KA  +      F E+  G         +V+  ++LI  Y K  ++++G R+F++M
Sbjct: 127 ISVALKACALG-VNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKM 185

Query: 116 PLKLKNVVSWTTVVLGCAH-----NGLIAKLEVISWT--------TMCTGLERNAMTKLA 162
               +NVVSWT ++ G  H      GL+   E+  W         T    L+ +A + L 
Sbjct: 186 --MTRNVVSWTAIIAGLVHAGYNMEGLLYFSEM--WRSKVGYDSHTFAIALKASADSSLL 241

Query: 163 R-------EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
                   +   Q  ++     N + T Y   G       LF  M   +V +W  +I  Y
Sbjct: 242 HHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTY 301

Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML-----ENMLAHALAIRLGFEQ 270
            + G E  A++    M +S   PN+ T  ++++SC  +      E +  H L  RLG   
Sbjct: 302 VQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVL--RLGLVN 359

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
             S+       Y     G    + SA L F  +  KD++SW+ +I  YS  G+  + F  
Sbjct: 360 ALSVANSIITLYS--KCGL---LKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDY 414

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
            + M + G KP+E     VLS C    L+E+G++    +    G    A  +S +  +  
Sbjct: 415 LSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHL-LCIGIDHEAMVHSAIISMYS 473

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL--IELQP 443
           + G V+EA ++ + M  +  D +   A++     HG  + A  + E++  + L+P
Sbjct: 474 KCGSVQEASKIFNGMKIN--DIISWTAMINGYAEHGYSQEAINLFEKISSVGLKP 526



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 34/320 (10%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  N++  ++ +   VK G++ +AR +FD++   +  SWT+LI+GY  A    E   LF 
Sbjct: 53  SVHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFS 112

Query: 114 RM---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
            M   P   ++    +  +  CA    I   E++   ++ +GL  +              
Sbjct: 113 NMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVS---------- 162

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
                  +A+I  Y+  G + Q   +F  M  RNV +W A+I      G     +   + 
Sbjct: 163 -------SALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSE 215

Query: 231 MFQSRF-MPNETTCTSILTSCEGML--ENMLAHALAIRLGFEQETSLTYKCTCHYVFW-- 285
           M++S+    + T   ++  S +  L       H   I+ GF++ + +       Y     
Sbjct: 216 MWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGK 275

Query: 286 -DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
            D+  +L        FE++   DVVSWT +I  Y   G        F RM KS   P++ 
Sbjct: 276 PDYVMRL--------FEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKY 327

Query: 345 TFVGVLSDCSHAGLVEKGRK 364
           TF  V+S C++    + G +
Sbjct: 328 TFAAVISSCANLAAAKWGEQ 347



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 70/303 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVF---------------LRNHDLPKAEALFRAMP 52
           GK     +LF++M  PD VS  ++I+ +               +R   +   +  F A+ 
Sbjct: 274 GKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVI 333

Query: 53  ESQRNIVA----------------------ESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
            S  N+ A                       +++I  Y K G +  A  VF  I   ++ 
Sbjct: 334 SSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDII 393

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIAKLEVIS 145
           SW+++IS Y +     E    FD +    +     N  + ++V+  C    L+ + + + 
Sbjct: 394 SWSTIISVYSQGGYAKEA---FDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVH 450

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
              +C G++  AM                   +A+I+ Y   G++ +AS++FN M   ++
Sbjct: 451 AHLLCIGIDHEAMVH-----------------SAIISMYSKCGSVQEASKIFNGMKINDI 493

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
            +W AMI+ YA +G    A+ L   +      P+      +LT+C         HA  + 
Sbjct: 494 ISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACN--------HAGMVD 545

Query: 266 LGF 268
           LGF
Sbjct: 546 LGF 548



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 28/150 (18%)

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PL 117
           +  SA+I  Y K G V EA K+F+ +   ++ SWT++I+GY +     E   LF+++  +
Sbjct: 463 MVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSV 522

Query: 118 KLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            LK + V +  V+  C H G                     M  L   YF+ M N   ++
Sbjct: 523 GLKPDYVMFIGVLTACNHAG---------------------MVDLGFYYFMLMTNVYRIS 561

Query: 177 -----WNAMITAYVDAGNMAQASELFNLMP 201
                +  +I     AG +++A  +   MP
Sbjct: 562 PSKEHYGCLIDLLCRAGRLSEAEHIIRSMP 591


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 156/516 (30%), Positives = 252/516 (48%), Gaps = 41/516 (7%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRNIVAES 62
           ++  A K+F+ M   D VS  +++  + +N    +A  L   M      P+S   +    
Sbjct: 195 QIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILP 254

Query: 63  AMIDGYVKAGRVDEARK--VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           A+ D  +KA R+  +     F   +E  V    +L+  YFK       R +F  M  + K
Sbjct: 255 AVAD--MKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM--RSK 310

Query: 121 NVVSWTTVVLGCAHNG-----------LIAKLEVISWTTMCTGLERNA-MTKLAREYFVQ 168
            VVSW T++ GCA NG           ++ + EV +  TM   L   A +  L R +FV 
Sbjct: 311 TVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVH 370

Query: 169 MP------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                   + ++   N++I+ Y     +  A+ +FN + + NV TWNAMI  YA+NG   
Sbjct: 371 KLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVK 429

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCT 279
            A+ L  +M       +  T   ++T+      N  A   H LA+R   +    ++    
Sbjct: 430 EALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALV 489

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
             Y          + +AR  F+ ++ + V++W AMI  Y  HG G +   LF  M K   
Sbjct: 490 DMYAKCG-----AIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAV 544

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           KP++ITF+ V+S CSH+G VE+G   F  M   Y  +P  +HYS + D+L RAGQ+ +A 
Sbjct: 545 KPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAW 604

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
             + +MP  +    VLGA+LGAC++H +V + +   ++L +L P   G +VL AN++A+ 
Sbjct: 605 NFIQEMPI-KPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASN 663

Query: 460 GEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
             WD+ A+VR  ME + + K    S +E++ + HT 
Sbjct: 664 SMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTF 699



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 29/317 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           ++ +I  + K G   EA +VF+ +       +  ++ GY K   + +    F RM     
Sbjct: 82  QTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV 141

Query: 121 NVV--SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
            +V   +  ++  C  N  + K   I    +  G E N                 +    
Sbjct: 142 RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESN-----------------LFVMT 184

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+++ Y     +  A ++F  M  +++ +W  ++  YA+NG    A++L+  M ++   P
Sbjct: 185 AVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKP 244

Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVN 294
           +  T  SIL +   M    +    H  A R GFE   ++T          D  F+     
Sbjct: 245 DSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT------NALLDMYFKCGSAR 298

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            ARL F+ + +K VVSW  MI   + +G   + F  F +ML  G  P  +T +GVL  C+
Sbjct: 299 IARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 355 HAGLVEKGRKTFNLMSR 371
           + G +E+G     L+ +
Sbjct: 359 NLGDLERGWFVHKLLDK 375


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 230/484 (47%), Gaps = 53/484 (10%)

Query: 37  RNHDL----PKAEALFRAMP------ESQRNIVAE---------SAMIDGYVKAGRVDEA 77
           RN D     P  EAL R+ P      +   +I+           + +I     AG +  A
Sbjct: 83  RNFDTQSHSPVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYA 142

Query: 78  RKVFDEIYEGNVYSWTSLIS-----GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132
           R++F  +   + + + SL+      G+     +   R LF   P   ++  ++T+V+  C
Sbjct: 143 RRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP---QSNYTFTSVIKAC 199

Query: 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
           A    +   + I    M  G                    D+    A+I  Y  A +M  
Sbjct: 200 ADLSALRLGKEIHSHVMVCGY-----------------GSDMYVQAALIALYAKASDMKV 242

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE- 251
           A ++F+ MPQR +  WN++I  Y +NG    ++ L +LM +S F P+  T  S+L+SC  
Sbjct: 243 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 302

Query: 252 -GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
            G L+     H  A   GF+    L       Y         +V+ AR  F+ ++ ++VV
Sbjct: 303 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG-----NVSKAREVFDSMKERNVV 357

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +WTAMI  Y  HG+G Q   LF  M   G +P+ ITFV VLS C+H+GL++ GR+ F+ M
Sbjct: 358 TWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 417

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
             AYG  P  EH  C+ D+  RAG + +A + + K  P E    V  ++LGACR+H +  
Sbjct: 418 KEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFD 477

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
           +   + E ++ ++P + G YV+ +N++A  G  D    VR  M  RR+KK   +S IE+ 
Sbjct: 478 LGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEIN 537

Query: 489 GKDH 492
            K +
Sbjct: 538 RKTY 541



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY--- 85
            S+I ++ R  ++ KA  +F +M E  RN+V  +AMI GY   G   +A ++F E+    
Sbjct: 329 TSLINMYTRCGNVSKAREVFDSMKE--RNVVTWTAMISGYGMHGYGRQAMELFTEMRAYG 386

Query: 86  -EGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
              N  ++ +++S    +  +D+GRR+F  M
Sbjct: 387 PRPNNITFVAVLSACAHSGLIDDGRRVFSSM 417


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 249/517 (48%), Gaps = 56/517 (10%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA--EALFRAMPESQ---- 55
           S F   G V EA  L  EM        A+ +T+    + LP    +   R++ E      
Sbjct: 322 SAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTIL---NVLPACLDKLQLRSLKELHGYSF 378

Query: 56  ----RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
               +++   +A I  Y K G ++ A KVF  I +  V SW +LI G+ +     +   L
Sbjct: 379 RHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHL 438

Query: 112 FDRMPLKLKNVVSWTTV---VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
             +M    +    W T+   +L CAH   +   + I    +  GLE              
Sbjct: 439 LFQMTYSGQQP-DWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLE-------------- 483

Query: 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
               D     ++++ Y+  G  + A  LF+ M  +N+ +WNAMI  Y++NG    ++ L 
Sbjct: 484 ---TDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALF 540

Query: 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE---------QETSLTYKCT 279
                     +E    S+  +C        +   A+RLG E         Q       C+
Sbjct: 541 RKSLSEGIQSHEIAIVSVFGAC--------SQLSALRLGKEAHGYVLKALQTEDAFVGCS 592

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
              ++   G    +  +R  F+ L+ K+V SW A+I+A+  HGHG +   L+ RM K G 
Sbjct: 593 IIDMYAKSGC---IKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQ 649

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
            PD  T++G+L  C HAGLVE+G K F  M      +P+ EHY+CL D+L RAG++ +A+
Sbjct: 650 MPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDAL 709

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
           R+V++M P E D+ +  +LL +CR  G + + + + ++L+EL+P  +  YVL +N++A  
Sbjct: 710 RLVNEM-PEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGL 768

Query: 460 GEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           G+WD   +VR+ M E  ++K A  S IEV G+ ++ +
Sbjct: 769 GKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFV 805



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 193/475 (40%), Gaps = 103/475 (21%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY----FKARQVDEGRRLF 112
           ++   +A++  Y K G VDEA KVFD + E N+ SW S+I  +    F     D    + 
Sbjct: 180 DVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEML 239

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREY------- 165
               L L +VV+  T++  CA  G +     I    +  GL    M   A  Y       
Sbjct: 240 GEEGL-LPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 166 -------FVQMPNKDIVAWNAMITAYVDAGNMAQASEL------------------FNLM 200
                  FV+  NK++V+WN MI+A+   G++ +A  L                   N++
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358

Query: 201 PQ----------------------RNVWTWNAMIDRYARNGPEGAAMKL----------- 227
           P                       ++V   NA I  YA+ G   +A K+           
Sbjct: 359 PACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSS 418

Query: 228 -----------------LNLMFQSRF---MPNETTCTSILTSC---EGMLENMLAHALAI 264
                            L+L+FQ  +    P+  T +S+L +C   + +      H   +
Sbjct: 419 WNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVL 478

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R G E +  +      HY+          +SAR+ F+R++ K++VSW AMI  YS +G  
Sbjct: 479 RNGLETDFFVGTSLLSHYIHCG-----KASSARVLFDRMKDKNLVSWNAMISGYSQNGLP 533

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
           ++   LF + L  G +  EI  V V   CS    +  G++    + +A   +       C
Sbjct: 534 YESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKA--LQTEDAFVGC 591

Query: 385 -LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            + D+  ++G +KE+ +V   +   +++     A++ A  +HG  + A  + ER+
Sbjct: 592 SIIDMYAKSGCIKESRKVFDGLK--DKNVASWNAIIVAHGIHGHGKEAIELYERM 644



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 42/330 (12%)

Query: 40  DLPKAEALFRAMPES---QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLI 96
           D+     L + + +S   + + V  + +I  Y   G   ++R VFD +   N+  W +L+
Sbjct: 58  DIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALV 117

Query: 97  SGYFKARQVDEGRRLF-------DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           SGY +     +  ++F       D  P    +  ++ +V+  C     +   EVI    +
Sbjct: 118 SGYTRNGLYGDVVKVFMDLVSDTDFQP----DNFTFPSVIKACGGILDVRLGEVIHGMVI 173

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
             GL                   D+   NA++  Y   G + +A ++F+ MP+ N+ +WN
Sbjct: 174 KMGLVL-----------------DVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWN 216

Query: 210 AMIDRYARNGPEGAAMKLL-NLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIR 265
           +MI  ++ NG    +  LL  ++ +   +P+  T  +IL  C G  E    M  H LA++
Sbjct: 217 SMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK 276

Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
           LG  +E  +       Y++   G+   +N A+++F +   K+VVSW  MI A+S  G   
Sbjct: 277 LGLSEEVMVNNAMV--YMYSKCGY---LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVN 331

Query: 326 QVFRLFARMLKSG--TKPDEITFVGVLSDC 353
           + F L   M   G   K +E+T + VL  C
Sbjct: 332 EAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 13/264 (4%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL-LNLM 231
           D V    +I  Y   G+   +  +F+ M  +N+  WNA++  Y RNG  G  +K+ ++L+
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWG 288
             + F P+  T  S++ +C G+L+  L    H + I++G   +  +       Y     G
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMY-----G 192

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFV 347
               V+ A   F+ +   ++VSW +MI A+S +G     F L   ML + G  PD +T V
Sbjct: 193 KCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVV 252

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            +L  C+  G V+ G     L  +  G        + +  +  + G + EA   +S +  
Sbjct: 253 TILPVCAGEGEVDIGMGIHGLAVK-LGLSEEVMVNNAMVYMYSKCGYLNEAQ--MSFVKN 309

Query: 408 HERDHVVLGALLGACRLHGDVRMA 431
           + ++ V    ++ A  L GDV  A
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEA 333


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 240/455 (52%), Gaps = 31/455 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++V  + +++ Y K G ++EA+ +FD++   ++ SWT LISGY ++ Q  E   LF +
Sbjct: 137 EDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK 196

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M            + LG   N       + +  T  +      +   + +Y   M   ++
Sbjct: 197 M------------LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM---NV 241

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              ++++  Y    +M +A  +FN +  +NV +WNA+I  +AR G     M+L   M + 
Sbjct: 242 HVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQ 301

Query: 235 RFMPNETTCTSILTSC--EGMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            F P   T +S+ T+C   G LE     HA  I+ G +    +       Y         
Sbjct: 302 GFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMY-----AKSG 356

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            +  A+  F RL  +D+VSW ++I  Y+ HG G +  +LF +MLK+  +P+EITF+ VL+
Sbjct: 357 SIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 416

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSH+GL+++G+  F LM + +  + +  H+  + D+L RAG++ EA + + +MP  +  
Sbjct: 417 ACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPI-KPT 474

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V GALLG+CR+H ++ +  Y  E++ EL P  SG +VL +N++A+ G   + A+VRK 
Sbjct: 475 AAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKM 534

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMRE 500
           M E  VKK  + S +E++ + H  +A     PMRE
Sbjct: 535 MKESGVKKEPACSWVEIENEVHVFVANDDSHPMRE 569



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 130/289 (44%), Gaps = 58/289 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G ++EA  LFD+M   D VS   +I+ + ++    +A ALF  M                
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213

Query: 52  ------PESQR---------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                 P                   N+   S+++D Y +   + EA+ +F+ +   NV 
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148
           SW +LI+G+ +  + +   RLF +M  +       ++++V   CA +G + + + +    
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV 333

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           + +G +  A                    N +I  Y  +G++  A ++F  + ++++ +W
Sbjct: 334 IKSGGQPIAYIG-----------------NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSW 376

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           N++I  YA++G    A++L   M +++  PNE T  S+LT+C   G+L+
Sbjct: 377 NSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLD 425


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 243/478 (50%), Gaps = 47/478 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+IT++LR  D   A  +F  M    R++V+ +A++D Y + G ++ AR+V D + E N 
Sbjct: 292 SLITLYLRMGDAAAAHRVFDDM--EVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNE 349

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH------------N 135
            SW++LI+ + +     E  +L+ +M  +    N+  +++V+  CA             N
Sbjct: 350 VSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTRIHAN 409

Query: 136 GL-----------IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            L            + +++      CT  +R          F  +P K+ V WN++I+ Y
Sbjct: 410 ALKMGFSSSLFVSSSLIDMYCKCKQCTDAQR---------IFNSLPEKNTVCWNSLISGY 460

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G M +A ELF  MP RN  +WN MI  YA N   G A+     M  S  +P E T +
Sbjct: 461 SWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLS 520

Query: 245 SILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           S+L +C  +       + HA  ++LG E    +    +  Y         D++S+R  F 
Sbjct: 521 SVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMY-----AKSGDLDSSRRMFY 575

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           ++  K+ ++WTAM+   + +G   +   LF  M+ +   P+E TF+ +L  CSH GLVE+
Sbjct: 576 QMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQ 635

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
               F  M +A+G  P+ +HY+C+ D+L RAG++ EA  ++ K+ P + D     +LL A
Sbjct: 636 AIHYFETM-QAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKV-PSKLDTSSWSSLLSA 693

Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
           C  + +  + +   ++L EL+  ++  YVL +N++A+ G+W + A+ R  M+  R+KK
Sbjct: 694 CNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGPRLKK 751



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 199/437 (45%), Gaps = 55/437 (12%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           M++  ++  D+  A  LF  MPE  +++V+ + M+D  +K G V +A K+++     +V 
Sbjct: 160 MVSEHVKAGDIASARRLFDGMPE--KSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVA 217

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGL------IAKL 141
            +T++I+G+ +     +   +F +M L+     NVV+   V+  C   G       +  L
Sbjct: 218 FFTAMIAGFVRNELHKDAFPVFRKM-LRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGL 276

Query: 142 EVISWTTMCTGLE-RNAMTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMA 191
             I W      +E  N++  L         A   F  M  +D+V+W A++  Y + G++ 
Sbjct: 277 -AIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLE 335

Query: 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
            A  + + MP+RN  +W+ +I R+ + G    A+KL + M      PN +  +S+L++C 
Sbjct: 336 GARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACA 395

Query: 252 GMLE---NMLAHALAIRLG-----FEQETSLTYKCTC----------------HYVFWD- 286
            + +       HA A+++G     F   + +   C C                + V W+ 
Sbjct: 396 TLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNS 455

Query: 287 ----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
               + +   +  A   F+++ A++  SW  MI  Y+ +         F  ML SG  P 
Sbjct: 456 LISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPG 515

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           EIT   VL  C++   +E G+     + +  G +      + L+D+  ++G +  + R+ 
Sbjct: 516 EITLSSVLLACANLCSLEMGKMVHAEIVK-LGIEDNIFMGTALSDMYAKSGDLDSSRRMF 574

Query: 403 SKMPPHERDHVVLGALL 419
            +MP  E++++   A++
Sbjct: 575 YQMP--EKNNITWTAMV 589



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 131/317 (41%), Gaps = 37/317 (11%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR  F  MP K +V++  M+ A +  G++  A +L+   P  +V  + AMI  + RN   
Sbjct: 173 ARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELH 232

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH---ALAIRLGF-----EQETS 273
             A  +   M +    PN  T   ++ +C G  E  LA     LAI+        E   S
Sbjct: 233 KDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVHNS 292

Query: 274 LTY-------KCTCHYVFWD--------WGFQLDV-------NSARLAFERLEAKDVVSW 311
           L             H VF D        W   LDV         AR   + +  ++ VSW
Sbjct: 293 LITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEVSW 352

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           + +I  +   G   +  +L+++ML  G +P+   F  VLS C+    +  G +  +  + 
Sbjct: 353 STLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGGTR-IHANAL 411

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             GF       S L D+  +  Q  +A R+ + +P  E++ V   +L+     +G +  A
Sbjct: 412 KMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLP--EKNTVCWNSLISGYSWNGKMVEA 469

Query: 432 DYIGERLIELQPSSSGA 448
               E L +  P+ + A
Sbjct: 470 ----EELFKKMPARNAA 482



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 29/237 (12%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIV 59
           S +   GK+ EA +LF +M   +  S  +MI+ +  N     A   F AM  S +    +
Sbjct: 458 SGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEI 517

Query: 60  AESAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
             S+++        ++  + V  EI     E N++  T+L   Y K+  +D  RR+F +M
Sbjct: 518 TLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQM 577

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL-------------- 161
           P   KN ++WT +V G A NG   +  ++    +   +  N  T L              
Sbjct: 578 P--EKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQ 635

Query: 162 AREYFVQM-----PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWNAMI 212
           A  YF  M     P KD   +  M+     AG + +A EL   +P + +  +W++++
Sbjct: 636 AIHYFETMQAHGIPPKD-KHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLL 691


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 164/540 (30%), Positives = 255/540 (47%), Gaps = 55/540 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE-SAMIDG 67
           +V  A K+FD +  PD V   +++        L  +EA+     ES   +V + S   D 
Sbjct: 164 RVDHARKVFDTVPSPDTVLWNTLLA------GLSGSEAV-----ESFARMVCDGSVRPDA 212

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSW-------------TSLISGYFKARQVDEGRRLFDR 114
              A  +  A +V D      V+S+             T LIS Y K   V+  R LFD 
Sbjct: 213 TTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDM 272

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M  +  ++V++  ++ G + NG++     +    M  GL  N+ T +A          D+
Sbjct: 273 M--EKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDL 330

Query: 175 VAW------------------NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
           +A                    A+ T +    +M  A + F+ MP++ + +WNAMI  YA
Sbjct: 331 LAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYA 390

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276
           +NG    A+ L   M +    PN  T +S L++C  +    L   L   +  E      Y
Sbjct: 391 QNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVY 450

Query: 277 KCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
             T    ++   G    ++ AR  F  ++ K+VVSW AMI  Y  HG G +  +L+  ML
Sbjct: 451 VMTALIDMYAKCG---SISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDML 507

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
            +   P   TF+ VL  CSH GLVE+G K F  M+  Y   P  EH +C+ D+L RAGQ+
Sbjct: 508 DAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQL 567

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           KEA  ++S+ P       V GALLGAC +H D  +A    ++L EL P +SG YVL +N+
Sbjct: 568 KEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNL 627

Query: 456 HAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           H ++ ++ E A VR++ + R++ K   ++ IE+  K H  +A     P  E  Y  L+++
Sbjct: 628 HTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKL 687



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 156/362 (43%), Gaps = 38/362 (10%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           + +  ++L   YF   +VD  R++FD +P    + V W T++      GL     V S+ 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVP--SPDTVLWNTLL-----AGLSGSEAVESFA 200

Query: 148 TM-CTGLERNAMTKLAREYFVQMPNKDIV-------------------AWNAMITAYVDA 187
            M C G  R   T LA          D+                        +I+ Y   
Sbjct: 201 RMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKC 260

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G++  A  LF++M + ++  +NA+I  Y+ NG  G+++ L   +      PN +T  +++
Sbjct: 261 GDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALI 320

Query: 248 TSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
                   ++LA   H   ++ GF   + ++   T  +   +     D+ SAR AF+ + 
Sbjct: 321 PVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLN-----DMESARKAFDTMP 375

Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
            K + SW AMI  Y+ +G       LF +M+K   +P+ IT    LS C+  G +  G+ 
Sbjct: 376 EKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKW 435

Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
              +++     +P     + L D+  + G + EA R+ + M    ++ V   A++    L
Sbjct: 436 LHRIITEE-DLEPNVYVMTALIDMYAKCGSISEARRIFNTM--DNKNVVSWNAMIAGYGL 492

Query: 425 HG 426
           HG
Sbjct: 493 HG 494


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 223/449 (49%), Gaps = 65/449 (14%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           ++ +V+  T+L+  Y  A ++ E RR+FD M                       ++ +V 
Sbjct: 41  FDSHVFVQTALVDFYGNAGKIVEARRVFDEM-----------------------SERDVF 77

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           +WTTM +   R      AR+ F +MP ++  +WNAMI  Y    N+  A  LF+ MP R+
Sbjct: 78  AWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRD 137

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAI 264
           + +W  MI  Y++N     A+ + N M  +   P+E T  +I+++C        AH  A+
Sbjct: 138 IISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISAC--------AHLGAL 189

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDV----------------NSARLAFERLEAKDV 308
            LG E           H    + GF LDV                + + + F +L  K++
Sbjct: 190 DLGKE----------IHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNL 239

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
             W ++I   + HG+  +   +F+RM +   KP+ +TF+ VL  C+HAGLVE+GRK F  
Sbjct: 240 FCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLS 299

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           MSR +   P  EHY C+ D+L +AG +++A+ +V  M   E + V+ GALLG C+LH ++
Sbjct: 300 MSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSM-RMEPNSVIWGALLGGCKLHRNL 358

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ-IE 486
           ++A         L+P++SG Y L  N++A    W E A +R  M E  V+K +  S  IE
Sbjct: 359 KIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIE 418

Query: 487 VKGKDHTLLAPMR-----EMGYVVLKEVD 510
           +  K H   A  +     +  Y +L E+D
Sbjct: 419 MDRKIHQFAASDKSHLASDEIYTLLVELD 447



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 21/249 (8%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           +G  GK+ EA ++FDEMS+ D  +  +MI+V  R  D+  A  LF  MP   RN  + +A
Sbjct: 55  YGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMP--VRNTASWNA 112

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KN 121
           MIDGY +   V+ A  +F ++   ++ SWT++I+ Y + +Q  E   +F+ M       +
Sbjct: 113 MIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPD 172

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            V+  T++  CAH G +   + I    M  G +                  D+   +A+I
Sbjct: 173 EVTMATIISACAHLGALDLGKEIHLYAMEMGFDL-----------------DVYIGSALI 215

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G++ ++  +F  + ++N++ WN++I+  A +G    A+ + + M + +  PN  
Sbjct: 216 DMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGV 275

Query: 242 TCTSILTSC 250
           T  S+L +C
Sbjct: 276 TFISVLGAC 284


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 251/501 (50%), Gaps = 35/501 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G++ +A K+FD MS  D V+C++++  + R   L +   +   M  S  + NIV+ + ++
Sbjct: 165 GRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGIL 224

Query: 66  DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            G+ ++G   EA  +F +I+      +  + +S++     +  ++ GR +   +      
Sbjct: 225 SGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV------ 278

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                         GL+    VIS      G   +    ++   F Q    +    NA I
Sbjct: 279 -----------IKQGLLKDKCVISAMIDMYGKSGHVYGIIS--LFNQFEMMEAGVCNAYI 325

Query: 182 TAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           T     G + +A E+F L  ++    NV +W ++I   A+NG +  A++L   M  +   
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSA 296
           PN  T  S+L +C  +    L H  +   GF     L           D   +   +N +
Sbjct: 386 PNHVTIPSMLPACGNIAA--LGHGRSTH-GFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           ++ F  +  K++V W +++  +S HG   +V  +F  ++++  KPD I+F  +LS C   
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL ++G K F +MS  YG KPR EHYSC+ ++L RAG+++EA  ++ +M P E D  V G
Sbjct: 503 GLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM-PFEPDSCVWG 561

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL +CRL  +V +A+   E+L  L+P + G YVL +N++AA+G W E   +R KME   
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           +KK    S I+VK + +TLLA
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLA 642



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 178/477 (37%), Gaps = 111/477 (23%)

Query: 53  ESQRNIVAESAMIDGYVKAGRV---------DEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           ++   I+   A  DGY+ A  +         ++A  V   I +  +YS++SLI    KA+
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
              +   +F RM     + +      +   CA        + I   +  +GL+ +A    
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDA---- 151

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
               FVQ          +M   Y+  G M  A ++F+ M  ++V T +A++  YAR G  
Sbjct: 152 ----FVQ---------GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198

Query: 222 GAAMKLLN-------------------------------LMFQS----RFMPNETTCTSI 246
              +++L+                               +MFQ      F P++ T +S+
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSV 258

Query: 247 LTSC-EGMLENM--LAHALAIRLGFEQETSLTYKCTCHY---VFWDWGFQLDVNSARLAF 300
           L S  +  + NM  L H   I+ G      L  KC       ++   G    + S    F
Sbjct: 259 LPSVGDSEMLNMGRLIHGYVIKQGL-----LKDKCVISAMIDMYGKSGHVYGIISLFNQF 313

Query: 301 ERLEAK--------------------------------DVVSWTAMILAYSNHGHGFQVF 328
           E +EA                                 +VVSWT++I   + +G   +  
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M  +G KP+ +T   +L  C +   +  GR T     R +         S L D+
Sbjct: 374 ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDM 432

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQP 443
             + G++  +  V + MP   ++ V   +L+    +HG  +    I E L+   L+P
Sbjct: 433 YAKCGRINLSQIVFNMMP--TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP 487



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 5   GC--TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQR 56
           GC   GK  EA +LF EM     +P+ V+  SM+        L    +   F        
Sbjct: 362 GCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD 421

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR-M 115
           N+   SA+ID Y K GR++ ++ VF+ +   N+  W SL++G+    +  E   +F+  M
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 116 PLKLK-NVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMT 159
             +LK + +S+T+++  C   GL                 K  +  ++ M   L R    
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 160 KLAREYFVQMP-NKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           + A +   +MP   D   W A++ +      VD   +A A +LF+L P+ N  T+  + +
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIA-AEKLFHLEPE-NPGTYVLLSN 599

Query: 214 RYARNG 219
            YA  G
Sbjct: 600 IYAAKG 605


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 198/371 (53%), Gaps = 26/371 (7%)

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           ++ + T +     +  M + AR+ F +MP +DI  WN++I  Y  +G+M  A ELFN MP
Sbjct: 116 DMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP 175

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKL-LNLMFQSRFMPNETTCTSILTSCE--GMLE-NM 257
            RNV +W A+I  YA+NG    A+++ + L  +    PNE +  S+L +C   G L+   
Sbjct: 176 VRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235

Query: 258 LAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVV 309
              A A   GF +          L  +C             ++  A+  F+ + +K ++ 
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCG------------NIEEAQQVFDEIGSKRNLC 283

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           SW  MI+  + HG      +L+ +ML    +PD++TFVG+L  C+H G+V +GR+ F  M
Sbjct: 284 SWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESM 343

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              +   P+ EHY CL D+L RAG+++EA  ++  M P   D V+ G LLGAC  HG+V 
Sbjct: 344 ESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNM-PMAPDSVIWGTLLGACSFHGNVE 402

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVK 488
           + +   E L +L+P + G YV+ +N++A  G+W   A++RK M+   + K A +S IEV 
Sbjct: 403 LGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVG 462

Query: 489 GKDHTLLAPMR 499
              H  +   R
Sbjct: 463 DGIHEFIVEDR 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 43/270 (15%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVF----LRNHDLPKAEALFRAMPESQRNIVA 60
           GC+      T LF         +CAS+  V+    L +H      A          ++ A
Sbjct: 77  GCSPNQYSFTFLFP--------ACASLFNVYPGQMLHSHFCKSGFA---------SDMFA 119

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++D Y K G +  AR++FDE+   ++ +W SLI+GY ++  ++    LF++MP  ++
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMP--VR 177

Query: 121 NVVSWTTVVLGCAHNGLIAK------------------LEVISWTTMCTGLERNAMTKLA 162
           NV+SWT ++ G A NG  AK                  + + S    C+ L    + K  
Sbjct: 178 NVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRI 237

Query: 163 REYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGP 220
             Y       K+    NA++  +   GN+ +A ++F+ +  +RN+ +WN MI   A +G 
Sbjct: 238 EAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGR 297

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              A++L + M   +  P++ T   +L +C
Sbjct: 298 CIDALQLYDQMLIRKMRPDDVTFVGLLLAC 327


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 149/497 (29%), Positives = 245/497 (49%), Gaps = 40/497 (8%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEA--LFRAMPESQRNIVA 60
            G   +A  + DEM       D V+ AS++ V  +  D+  A    L+      +  +  
Sbjct: 251 NGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFV 310

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A+I+ Y K G + +A+KVF +++  +V SW S+I+ Y +       R  F +M L   
Sbjct: 311 SNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL--- 367

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN---KDIVAW 177
                         NGL   L  +          R+     +   F+       + +V  
Sbjct: 368 --------------NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           NA++  Y   G +  A ++FNL+P ++V +WN +I  Y +NG    A+++  +M + R +
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 238 P-NETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLD 292
             N+ T  SIL +      + + M  H   I+     +    +  TC   ++   G  +D
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDV---FVGTCLIDLYGKCGRLVD 530

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
              A   F ++  +  V W A+I  +  HGHG +  +LF  M   G KPD +TF+ +LS 
Sbjct: 531 ---AMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSA 587

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+GLV++G+  F+LM + YG KP  +HY C+ D+L RAG ++ A   +  MP H  D 
Sbjct: 588 CSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHP-DA 645

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-K 471
            + GALLGACR+HG++ +  +  +RL E+   + G YVL +N++A  G+W+   +VR   
Sbjct: 646 SIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLA 705

Query: 472 MERRVKKVASFSQIEVK 488
            ER +KK   +S IEV 
Sbjct: 706 RERGLKKTPGWSSIEVN 722



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 191/466 (40%), Gaps = 69/466 (14%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKA-------------EALFRA 50
           +   G V  +   FD++ + D  +  SMI+ ++RN    +A             +A F  
Sbjct: 118 YASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYT 177

Query: 51  MPES----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
            P                        Q ++   +++I  Y + G V  AR +FD++   +
Sbjct: 178 FPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRD 237

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISW 146
           + SW ++ISG  +     +   + D M L+  N+ S T  +++  CA  G I+   +I  
Sbjct: 238 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHL 297

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
             +  GLE         E FV          NA+I  Y   GN+  A ++F  M  R+V 
Sbjct: 298 YVIKHGLE--------FELFVS---------NALINMYAKFGNLGDAQKVFQQMFLRDVV 340

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT---SILTSCEGMLENMLAHALA 263
           +WN++I  Y +N     A      M  +   P+  T     SI         +   H   
Sbjct: 341 SWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFI 400

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDV-NSARLAFERLEAKDVVSWTAMILAYSNHG 322
           +R G+  E  +           D   +L V +SA   F  +  KDVVSW  +I  Y+ +G
Sbjct: 401 MRRGWLMEAVVIGNAVM-----DMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNG 455

Query: 323 HGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
              +   ++ RM++     K ++ T+V +L+  +H G +++G +    + +         
Sbjct: 456 LASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-NLHLDVF 513

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             +CL D+  + G++ +AM +  ++P      V   A++    +HG
Sbjct: 514 VGTCLIDLYGKCGRLVDAMCLFYQVP--RESSVPWNAIISCHGIHG 557



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 32/370 (8%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKA 102
           +  AL     + Q N ++   +++ Y   G V  +R  FD+I   +VY+W S+IS Y + 
Sbjct: 94  RLHALLVVSGKIQSNFIS-IRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 103 RQVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159
               E    F ++ L  K   +  ++  V+  C    L+   ++  W           + 
Sbjct: 153 GHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC--QTLVDGRKIHCW-----------VF 199

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           KL  ++       D+    ++I  Y   G +  A  LF+ MP R++ +WNAMI    +NG
Sbjct: 200 KLGFQW-------DVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTY 276
               A+ +L+ M       +  T  SIL  C  + +     L H   I+ G E E  ++ 
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSN 312

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y  +      ++  A+  F+++  +DVVSW ++I AY  +         F +M  
Sbjct: 313 ALINMYAKFG-----NLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL 367

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G +PD +T V + S  + +   +  R     + R           + + D+  + G + 
Sbjct: 368 NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVID 427

Query: 397 EAMRVVSKMP 406
            A +V + +P
Sbjct: 428 SAHKVFNLIP 437


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 152/534 (28%), Positives = 257/534 (48%), Gaps = 69/534 (12%)

Query: 10  VKEATKLFDEMSQPDPVSCASMIT-----------------VFLRNHDLPKAEALFRAMP 52
           +  A  +FD M   D +S  S+I+                 ++++ H+L  +  L   +P
Sbjct: 461 IDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL-DSTTLLSVLP 519

Query: 53  ESQRN-----------------IVAES----AMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
              R+                 ++ E+    A++D Y          ++F  + + NV S
Sbjct: 520 ACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVS 579

Query: 92  WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           WT++I+ Y +A   D+   L   M L     +V + T+V+ G A +  + + + +    +
Sbjct: 580 WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAI 639

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
                RN M KL            +   NA++  YV+  NM +A  +F+ +  +++ +WN
Sbjct: 640 -----RNGMEKL------------LPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWN 682

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRL 266
            +I  Y+RN     +  L + M   +F PN  T T IL    S   +      HA A+R 
Sbjct: 683 TLIGGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERGREIHAYALRR 741

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           GF +++  +      YV    G  L    AR+ F+RL  K+++SWT MI  Y  HG G  
Sbjct: 742 GFLEDSYTSNALVDMYV--KCGALL---VARVLFDRLTKKNLISWTIMIAGYGMHGCGKD 796

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF +M  SG +PD  +F  +L  C H+GL  +G K FN M + Y  +P+ +HY+C+ 
Sbjct: 797 AVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIV 856

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L   G +KEA   +  MP  E D  +  +LL  CR+H DV++A+ + +R+ +L+P ++
Sbjct: 857 DLLSHTGNLKEAFEFIESMPI-EPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENT 915

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMR 499
           G YVL AN++A    W+   +++ K+  R +++    S IEV+GK H  +A  R
Sbjct: 916 GYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNR 969



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 30/296 (10%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKL 119
           S ++  YVK G +  AR+VFD +  +GNV+ W  ++ GY KA + +E   LF++M  L +
Sbjct: 347 SKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGI 406

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWN 178
                  + +L C                 C    R+ +  +A  Y V++         N
Sbjct: 407 TPDEHALSCLLKC---------------ITCLSCARDGL--VAHGYLVKLGFGTQCAVCN 449

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I+ Y  +  +  A  +F+ MP ++  +WN++I     NG    A++L   M+      
Sbjct: 450 ALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 239 NETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYV-FWDWGFQLDVN 294
           + TT  S+L +C          + H  +++ G   ETSL       Y    DW      +
Sbjct: 510 DSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDW------H 563

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           S    F  +  K+VVSWTAMI +Y+  G   +V  L   M+  G KPD      VL
Sbjct: 564 STNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 157/396 (39%), Gaps = 77/396 (19%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE------- 83
           ++  +L+  DL  A  +F  MP    ++   ++++  Y KAG   E   +F +       
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 84  ------------------IYEGNVYSW--------------TSLISGYFKARQVDEGRRL 111
                             I EG V                  +LI+ Y +   +++  ++
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLE 154
           FD M    ++ +SW + + G   NG                  I+ + V+S    C  L 
Sbjct: 256 FDSM--HARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313

Query: 155 RNAMTKLAREYFVQ----------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR- 203
              + K+   Y ++              D    + ++  YV  G+M  A  +F+ MP + 
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAH 260
           NV  WN ++  YA+      ++ L   M +    P+E   + +L   T      + ++AH
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              ++LGF  + ++   C     F+     +D  +A L F+R+  +D +SW ++I   ++
Sbjct: 434 GYLVKLGFGTQCAV---CNALISFYAKSNMID--NAVLVFDRMPHQDTISWNSVISGCTS 488

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           +G   +   LF RM   G + D  T + VL  C+ +
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 163/405 (40%), Gaps = 50/405 (12%)

Query: 43  KAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISGYF 100
           +A AL RA        V    ++  Y+K G +  AR VFDE+     +V  WTSL+S Y 
Sbjct: 115 RAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYA 174

Query: 101 KARQVDEGRRLFDRMPL-KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159
           KA    EG  LF +M    +       + VL C     IA L  I+   +  GL    + 
Sbjct: 175 KAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKC-----IASLGSITEGEVIHGL----LE 225

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           KL          +     NA+I  Y   G M  A ++F+ M  R+  +WN+ I  Y  NG
Sbjct: 226 KLGL-------GEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGF-------- 268
               A+ L + M+      +  T  S+L +C  +   L   + H  +++ G         
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 269 -EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQ 326
              + +L  K    YV        D+ SAR  F+ + +K +V  W  ++  Y+      +
Sbjct: 339 SGIDEALGSKLVFMYVKCG-----DMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEE 393

Query: 327 VFRLFARMLKSGTKPDEITFVGVLS-----DCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
              LF +M + G  PDE     +L       C+  GLV  G           GF  +   
Sbjct: 394 SLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV------KLGFGTQCAV 447

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
            + L     ++  +  A+ V  +MP   +D +   +++  C  +G
Sbjct: 448 CNALISFYAKSNMIDNAVLVFDRMP--HQDTISWNSVISGCTSNG 490


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 251/501 (50%), Gaps = 35/501 (6%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G++ +A K+FD MS  D V+C++++  + R   L +   +   M  S  + NIV+ + ++
Sbjct: 165 GRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGIL 224

Query: 66  DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
            G+ ++G   EA  +F +I+      +  + +S++     +  ++ GR +   +      
Sbjct: 225 SGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV------ 278

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
                         GL+    VIS      G   +    ++   F Q    +    NA I
Sbjct: 279 -----------IKQGLLKDKCVISAMIDMYGKSGHVYGIIS--LFNQFEMMEAGVCNAYI 325

Query: 182 TAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           T     G + +A E+F L  ++    NV +W ++I   A+NG +  A++L   M  +   
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSA 296
           PN  T  S+L +C  +    L H  +   GF     L           D   +   +N +
Sbjct: 386 PNHVTIPSMLPACGNIAA--LGHGRSTH-GFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           ++ F  +  K++V W +++  +S HG   +V  +F  ++++  KPD I+F  +LS C   
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL ++G K F +MS  YG KPR EHYSC+ ++L RAG+++EA  ++ +M P E D  V G
Sbjct: 503 GLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM-PFEPDSCVWG 561

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           ALL +CRL  +V +A+   E+L  L+P + G YVL +N++AA+G W E   +R KME   
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           +KK    S I+VK + +TLLA
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLA 642



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 178/477 (37%), Gaps = 111/477 (23%)

Query: 53  ESQRNIVAESAMIDGYVKAGRV---------DEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           ++   I+   A  DGY+ A  +         ++A  V   I +  +YS++SLI    KA+
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
              +   +F RM     + +      +   CA        + I   +  +GL+ +A    
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDA---- 151

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
               FVQ          +M   Y+  G M  A ++F+ M  ++V T +A++  YAR G  
Sbjct: 152 ----FVQ---------GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198

Query: 222 GAAMKLLN-------------------------------LMFQS----RFMPNETTCTSI 246
              +++L+                               +MFQ      F P++ T +S+
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSV 258

Query: 247 LTSC-EGMLENM--LAHALAIRLGFEQETSLTYKCTCHY---VFWDWGFQLDVNSARLAF 300
           L S  +  + NM  L H   I+ G      L  KC       ++   G    + S    F
Sbjct: 259 LPSVGDSEMLNMGRLIHGYVIKQGL-----LKDKCVISAMIDMYGKSGHVYGIISLFNQF 313

Query: 301 ERLEAK--------------------------------DVVSWTAMILAYSNHGHGFQVF 328
           E +EA                                 +VVSWT++I   + +G   +  
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            LF  M  +G KP+ +T   +L  C +   +  GR T     R +         S L D+
Sbjct: 374 ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDM 432

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQP 443
             + G++  +  V + MP   ++ V   +L+    +HG  +    I E L+   L+P
Sbjct: 433 YAKCGRINLSQIVFNMMP--TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP 487



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 5   GC--TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQR 56
           GC   GK  EA +LF EM     +P+ V+  SM+        L    +   F        
Sbjct: 362 GCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD 421

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR-M 115
           N+   SA+ID Y K GR++ ++ VF+ +   N+  W SL++G+    +  E   +F+  M
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 116 PLKLK-NVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMT 159
             +LK + +S+T+++  C   GL                 K  +  ++ M   L R    
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 160 KLAREYFVQMP-NKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           + A +   +MP   D   W A++ +      VD   +A A +LF+L P+ N  T+  + +
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIA-AEKLFHLEPE-NPGTYVLLSN 599

Query: 214 RYARNG 219
            YA  G
Sbjct: 600 IYAAKG 605


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 245/513 (47%), Gaps = 72/513 (14%)

Query: 10  VKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           + EA  +++EM     DPV   +++  +LR  +L  A  +F  M  + R++++ SAM+DG
Sbjct: 147 LHEAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM--TVRDVISWSAMVDG 204

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
             K G V EAR+VFD + E NV SWTS+I GY K     +G  LF  M  +    N  + 
Sbjct: 205 LCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTL 264

Query: 126 TTVVLGCA-----------HNGLIA----------------------------------K 140
           +  +  CA           HN +I+                                  +
Sbjct: 265 SVALDACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQ 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +++SW ++ TG  ++ M + A   F  M  KD V+W +M+  + + G M ++ ELF  M
Sbjct: 325 KDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM 384

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENM 257
           P ++   W A+I  +  NG   +A++    M Q    PN    + +L++   +    +  
Sbjct: 385 PVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGR 444

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWT 312
            AHA +I +G+  ++++       Y              RLA     F  +    +++  
Sbjct: 445 QAHAYSINMGWVFDSAVHTSLVSMYA----------KCGRLAEAYHVFSSISNPSLIAIN 494

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           +MI A+  HG      +LF +M  +G KP+ +TF+G+L+ C+ AG V++G   F  M   
Sbjct: 495 SMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPV 554

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMA 431
           YG +P  EHY+C+ D+L RAG + EA+ +++ MP  + DH     ALL A  LH ++  A
Sbjct: 555 YGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP--QNDHSDAWAALLSASSLHSNLAFA 612

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
               ++L+E  P  + AY + + + ++ G  DE
Sbjct: 613 KIAAQKLLEKDPYDATAYTVLSRMFSSAGMEDE 645



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 204/471 (43%), Gaps = 79/471 (16%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + R   L  A+ LF  MP   R++++ +A++  Y   G +  AR VFD++   N 
Sbjct: 43  ALLTSYGRRGRLRDAQLLFDQMPS--RDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----- 144
            SW +L+S Y +A +      LF +MP   KN VS+  ++ G A   ++ + E++     
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMP--AKNAVSYGAIISGLAKAEMLHEAELVYEEMP 158

Query: 145 -SW------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
             W        +  G  R     +A   F  M  +D+++W+AM+      G++++A  +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGML 254
           + MP+RNV +W +MI  Y + G     + L   M +     N TT +  L +C       
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLAR 278

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW------------------------GF- 289
           E +  H L I +GFE +  L       Y  + W                        G+ 
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYV 338

Query: 290 QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF----------------- 328
           Q D V  A + F+ +  KD VSWT+M++ ++N G      ++F                 
Sbjct: 339 QHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISS 398

Query: 329 -----------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
                      R F RM + G KP+ I F  +LS  +   ++ +GR+  +  S   G+  
Sbjct: 399 FITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQA-HAYSINMGWVF 457

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
            +  ++ L  +  + G++ EA  V S +       + + +++ A   HG V
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSIS--NPSLIAINSMITAFVQHGFV 506



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
            S +   G++ EA  +F  +S P  ++  SMIT F+++  +  A  LF  M  +  + N 
Sbjct: 466 VSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNH 525

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           V    ++ G  +AG V +    F+ +      E N   +T ++    +A  + E   + +
Sbjct: 526 VTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMIN 585

Query: 114 RMP 116
            MP
Sbjct: 586 SMP 588


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/505 (29%), Positives = 241/505 (47%), Gaps = 52/505 (10%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------PESQR 56
           +V  A +LFDE+  P  +    +I  +  N     A  L+ +M            P   +
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
                 A+ DG      +    K+F    E +V+  T+L+  Y K   + E +RLF  M 
Sbjct: 118 ACSGLLAIEDGV----EIHSHAKMFG--LESDVFVCTALVDFYAKCGILVEAQRLFSSM- 170

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
              ++VV+W  ++ GC+  GL                        A +  +QM  + I  
Sbjct: 171 -SHRDVVAWNAMIAGCSLYGLCDD---------------------AVQLIMQMQEEGICP 208

Query: 177 WNAMITAYVDAGN-MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            ++ I   +     +  A ++F++M  RN  +W+AMI  Y  +     A+ +  +M  S 
Sbjct: 209 NSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSG 268

Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
             P+ TT   +L +C     +     +H   I  GF  +T +     C+ +   +     
Sbjct: 269 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI-----CNALIDMYSKCGK 323

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ AR  F R++  D+VSW AMI+ Y  HG G +   LF  +L  G KPD+ITF+ +LS 
Sbjct: 324 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 383

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+GLV +GR  F+ MSR +   PR EH  C+ DIL RAG + EA   +  M P E D 
Sbjct: 384 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM-PFEPDV 442

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KK 471
            +  ALL ACR+H ++ + + + +++  L P S+G +VL +N+++A G WD+ A +R  +
Sbjct: 443 RIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQ 502

Query: 472 MERRVKKVASFSQIEVKGKDHTLLA 496
            +  +KK+   S IE+ G  H  + 
Sbjct: 503 KDWGLKKIPGCSWIEINGIVHAFVG 527



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 11/213 (5%)

Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
           K+ + +     N D    + +   Y+    +  A  LF+ +P  +V  WN +I  YA NG
Sbjct: 29  KIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNG 88

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTY 276
           P   A+ L + M      PN+ T   +L +C G+L   + +  H+ A   G E +    +
Sbjct: 89  PFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD---VF 145

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
            CT    F+     L V + RL F  +  +DVV+W AMI   S +G      +L  +M +
Sbjct: 146 VCTALVDFYAKCGIL-VEAQRL-FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
            G  P+  T VGVL  C     +   RK F++M
Sbjct: 204 EGICPNSSTIVGVLPTCQ---CLLYARKIFDVM 233


>gi|119638460|gb|ABL85051.1| hypothetical protein 57h21.26 [Brachypodium sylvaticum]
          Length = 753

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 237/466 (50%), Gaps = 37/466 (7%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
           AS++ ++  + D+ +A   F  M   Q  + + +A+I GY+ A ++DEA  +F+ +   +
Sbjct: 293 ASLVAMYCNSLDIDEARLEFDKMDRKQ--VGSWNAIIRGYIYAEKIDEAENIFESMTYRD 350

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-------- 140
             SW S+I+GY +  ++ +   L+ +MP K  NV + T ++     NG + K        
Sbjct: 351 KVSWNSMINGYIRDGRIADATELYSKMPEK--NVEAATALMSWFIDNGKLGKARDMFYSL 408

Query: 141 --LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
             ++V+S T +  G  +      A + F +M  +  V +N MI  ++  G +A+A +LFN
Sbjct: 409 PQVDVMSCTALLFGYMKEGYLDDALDLFHRMHKRTAVTYNVMIAGFLHQGKVAEAYKLFN 468

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLE 255
             P  +  T +  +   A+NG    A+KL   M  S    +E+  +S+++ C     ++ 
Sbjct: 469 ESPAHDATTCSCFVTGLAQNGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMIVH 528

Query: 256 NMLAHALAIRLGFE-------QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
            +  HA  I+LGFE          SL  KC             ++ +A+  F+++  +DV
Sbjct: 529 GLQLHATTIKLGFELYLIIQNSLISLYSKCG------------EMVAAQNIFDQMVKRDV 576

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           V+W  +I  Y+ +  G     +F  M  +   PDEITF+GVLS C+H  L+E+ +  F++
Sbjct: 577 VTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDPDEITFLGVLSACNHMSLLEEAKHFFDV 636

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           M+  YG  P   HY+C+ D+L R G V+EA  ++  M P E D  +  +LL +CRL G  
Sbjct: 637 MTCDYGIAPNMMHYACMVDLLCRRGMVEEAEGLMKSM-PFEPDSAIWTSLLSSCRLSGSD 695

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
           ++A++   +LI + P +   Y+   NVH +  +W     +R ++ R
Sbjct: 696 KLAEHAASQLIAINPCTKMPYLHLINVHGSMDKWAVIDSLRSQITR 741



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 193/469 (41%), Gaps = 68/469 (14%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
            + +   G V    ++FD++  P+     ++++  + NH +  A  +F  MP   RN+V+
Sbjct: 133 VTMYASCGVVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMP--ARNVVS 190

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +AM+ G+V    V +A ++F+ +   N  SW  +I G    +Q  E   LF+ +   ++
Sbjct: 191 WTAMVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSL---MR 247

Query: 121 NVVSWTTVVL--------------------------GCAHNGLI---------------- 138
           N    T V+L                          G  H+ +I                
Sbjct: 248 NGDEVTNVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDE 307

Query: 139 AKLE--------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
           A+LE        V SW  +  G         A   F  M  +D V+WN+MI  Y+  G +
Sbjct: 308 ARLEFDKMDRKQVGSWNAIIRGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRI 367

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           A A+EL++ MP++NV    A++  +  NG  G A      MF S    +  +CT++L   
Sbjct: 368 ADATELYSKMPEKNVEAATALMSWFIDNGKLGKARD----MFYSLPQVDVMSCTALLFGY 423

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
             M E  L  AL +     + T++TY    + +   +  Q  V  A   F    A D  +
Sbjct: 424 --MKEGYLDDALDLFHRMHKRTAVTY----NVMIAGFLHQGKVAEAYKLFNESPAHDATT 477

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
            +  +   + +G      +L+ +ML S     E     ++S CSH  ++  G +  +  +
Sbjct: 478 CSCFVTGLAQNGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMIVHGLQ-LHATT 536

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
              GF+      + L  +  + G++  A  +  +M   +RD V    L+
Sbjct: 537 IKLGFELYLIIQNSLISLYSKCGEMVAAQNIFDQMV--KRDVVTWNTLI 583



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 138/271 (50%), Gaps = 36/271 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G++ +AT+L+ +M + +  +  ++++ F+ N  L KA  +F ++P  Q ++++ +A++ G
Sbjct: 365 GRIADATELYSKMPEKNVEAATALMSWFIDNGKLGKARDMFYSLP--QVDVMSCTALLFG 422

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
           Y+K G +D+A  +F  +++    ++  +I+G+    +V E  +LF+  P    +  + + 
Sbjct: 423 YMKEGYLDDALDLFHRMHKRTAVTYNVMIAGFLHQGKVAEAYKLFNESP--AHDATTCSC 480

Query: 128 VVLGCAHNGLI-----------------AKLEVISWTTMCT-------GLERNAMT-KLA 162
            V G A NGLI                 ++  V S  + C+       GL+ +A T KL 
Sbjct: 481 FVTGLAQNGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMIVHGLQLHATTIKLG 540

Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            E +       ++  N++I+ Y   G M  A  +F+ M +R+V TWN +I  YA N    
Sbjct: 541 FELY-------LIIQNSLISLYSKCGEMVAAQNIFDQMVKRDVVTWNTLIHGYAFNSLGQ 593

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253
            A+++   M  ++  P+E T   +L++C  M
Sbjct: 594 NAIEMFKNMKIAQVDPDEITFLGVLSACNHM 624



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 132/313 (42%), Gaps = 59/313 (18%)

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +V+ + ++  +++AGR D AR+VFD +   +V SW S +S + ++        LF  + L
Sbjct: 25  VVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLF--LEL 82

Query: 118 KLKNV----VSWTTVVLGCAH-----------------------------------NGLI 138
           + + V     S +TV+  CA                                     G++
Sbjct: 83  RRRGVRPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGVV 142

Query: 139 AKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG 188
             LE          V  W  + +GL  N     AR  F +MP +++V+W AM+  +V   
Sbjct: 143 DCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHVSVH 202

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           ++ QA ELFNLMP +N  +W  MI           A++L N + ++           ++ 
Sbjct: 203 DVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVTNVILVKVVN 262

Query: 249 SCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +  G+         H  +++ GF  +  +       Y        LD++ ARL F++++ 
Sbjct: 263 AYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYC-----NSLDIDEARLEFDKMDR 317

Query: 306 KDVVSWTAMILAY 318
           K V SW A+I  Y
Sbjct: 318 KQVGSWNAIIRGY 330



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 32/190 (16%)

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +V+ N ++ A++ AG    A E+F+ MP+R+V +WN+ +  +AR+G    A  L   + +
Sbjct: 25  VVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRR 84

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYV-- 283
               P+ T+ +++L++C   E +      H LA+R       F   + +T   +C  V  
Sbjct: 85  RGVRPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGVVDC 144

Query: 284 --------------FWDW---GFQLD--VNSARLAFERLEAKDVVSWTAMI---LAYSNH 321
                          W+    G  ++  V  AR  F R+ A++VVSWTAM+   ++  + 
Sbjct: 145 LERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHVSVHDV 204

Query: 322 GHGFQVFRLF 331
           G   ++F L 
Sbjct: 205 GQAVELFNLM 214



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
           ++AR  F+ +  +DVVSW + + A++  G       LF  + + G +PD  +   VLS C
Sbjct: 42  DAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRRRGVRPDGTSLSTVLSAC 101

Query: 354 SHAGLVEKGRKTFNLMSRA 372
           +    +E GR    L  R+
Sbjct: 102 ARLEALELGRCVHGLALRS 120


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/554 (27%), Positives = 254/554 (45%), Gaps = 74/554 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------- 51
           S +   GK+ +A KLFDEM   D +S   +   FLRN +      L + M          
Sbjct: 98  SLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDHAT 157

Query: 52  ----------PE----------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                     PE                  + I   + +I  Y K G     R VFD + 
Sbjct: 158 LTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMS 217

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEV 143
             NV + T++ISG  +    ++G RLF  M   L   N V++ + +  C+ +  I     
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRI----- 272

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
                    +E   +  L  +Y ++    ++   +A++  Y   G++  A  +F    + 
Sbjct: 273 ---------VEGQQIHALLWKYGIE---SELCIESALMDMYSKCGSIEDAWTIFESTTEV 320

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---- 259
           +  +   ++   A+NG E  A++    M Q+    +    +++L      ++N L     
Sbjct: 321 DEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGV--SFIDNSLGLGKQ 378

Query: 260 -HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            H+L I+  F   T +       Y         D+  ++  F R+  ++ VSW +MI A+
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCG-----DLTDSQTVFRRMPKRNYVSWNSMIAAF 433

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HGHG    +L+  M     KP ++TF+ +L  CSH GL++KGR+  N M   +G +PR
Sbjct: 434 ARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPR 493

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            EHY+C+ D+L RAG +KEA   +  +P  + D  +  ALLGAC  HGD  + +Y  E+L
Sbjct: 494 TEHYTCIIDMLGRAGLLKEAKSFIDSLPL-KPDCKIWQALLGACSFHGDTEVGEYAAEQL 552

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL--- 494
            +  P SS A++L AN++++RG+W E A+  K+M+   V K    S IE++ K H+    
Sbjct: 553 FQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVE 612

Query: 495 --LAPMREMGYVVL 506
             L P  E  Y VL
Sbjct: 613 DKLHPQAEAIYDVL 626



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 169/405 (41%), Gaps = 34/405 (8%)

Query: 55  QRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
            RN +V  ++++  Y K G++ +A K+FDE+   +V S   +  G+ + R+ + G  L  
Sbjct: 86  HRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLK 145

Query: 114 RMPLKLKNVVSWTTVVLGCA---HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           RM              LG     H  L   L V      C  L    +  LA    +   
Sbjct: 146 RM--------------LGSGGFDHATLTIVLSVCDTPEFC--LVTKMIHALA---ILSGY 186

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +K+I   N +IT+Y   G       +F+ M  RNV T  A+I     N      ++L +L
Sbjct: 187 DKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSL 246

Query: 231 MFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +    PN  T  S L +C G   ++E    HAL  + G E E  L  +     ++   
Sbjct: 247 MRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESE--LCIESALMDMYSKC 304

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G    +  A   FE     D VS T +++  + +G   +  + F RML++G + D     
Sbjct: 305 G---SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVS 361

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL        +  G++  +L+ +   F       + L ++  + G + ++  V  +MP 
Sbjct: 362 AVLGVSFIDNSLGLGKQLHSLVIKR-KFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP- 419

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
            +R++V   +++ A   HG    A  + E +  L+   +    LS
Sbjct: 420 -KRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLS 463


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/519 (28%), Positives = 245/519 (47%), Gaps = 44/519 (8%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + EA  LFD+  + + VS  SMI  + R  D+ +   L + M      + A+   I   +
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTI---L 311

Query: 70  KAGRVDEARKVFDEIYEGNVYSW-----------TSLISGYFKARQVDEGRRLFDRMPLK 118
               V   R     + E + YSW            + I+ Y +   +    R+FD M   
Sbjct: 312 NVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM--D 369

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN---------AMTKLAREYFVQM 169
            K V SW  ++ G A N    K   +      +GL+ +         A +++   ++ + 
Sbjct: 370 TKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE 429

Query: 170 PNK---------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            +          D     ++++ Y+  G    A  LF+ M  R++ +WN MI  Y++NG 
Sbjct: 430 IHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL 489

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYK 277
              A+ L   M      P E     +  +C  +    L    H  A++    ++  ++  
Sbjct: 490 PDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSS 549

Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
               Y          +  ++  F+RL  KDV SW  +I  Y  HG G +   LF +ML+ 
Sbjct: 550 IIDMYAKGGC-----IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRL 604

Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
           G KPD+ TF G+L  CSHAGLVE G + FN M   +  +P+ EHY+C+ D+L RAG++ +
Sbjct: 605 GLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDD 664

Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
           A+R++ +MP  + D  +  +LL +CR+HG++ + + +  +L+EL+P     YVL +N+ A
Sbjct: 665 ALRLIEEMPG-DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 723

Query: 458 ARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLL 495
             G+WD+  +VR +M+   ++K A  S IEV GK H  L
Sbjct: 724 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 762



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 209/479 (43%), Gaps = 57/479 (11%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
           + +G  G V+EA K+F+ M + + VS  S+I  F  N  L ++   FR M   + + V +
Sbjct: 144 AMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPD 203

Query: 62  SAMIDGY--VKAGRVDEARK-----------VFDEIYEGNVYSWTSLISGYFKARQVDEG 108
            A +     V AG  D  +            + +E+   N     SLI  Y K R + E 
Sbjct: 204 VATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN-----SLIDMYSKCRFLSEA 258

Query: 109 RRLFDRMPLKLKNVVSWTTVVLG-------CAHNGLIAKLE------------VISWTTM 149
           + LFD+     KN+VSW +++ G       C    L+ K++            +++   +
Sbjct: 259 QLLFDKN--DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPV 316

Query: 150 CTGLERNAMTKLAREYFVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           C  LER+ +  L   +       + + ++VA NA I AY   G +  +  +F+LM  + V
Sbjct: 317 C--LERSELQSLKELHGYSWRHGLQSNELVA-NAFIAAYTRCGALCSSERVFDLMDTKTV 373

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HAL 262
            +WNA++  YA+N     A+ L   M  S   P+  T  S+L +C  M         H  
Sbjct: 374 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF 433

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
           A+R G   +  +       Y+     F     +A++ F+ +E + +VSW  MI  YS +G
Sbjct: 434 ALRNGLAVDPFIGISLLSLYICCGKPF-----AAQVLFDGMEHRSLVSWNVMIAGYSQNG 488

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
              +   LF +ML  G +P EI  + V   CS    +  G++      +A+         
Sbjct: 489 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVS 547

Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           S + D+  + G +  + R+  ++   E+D      ++    +HG  + A  + E+++ L
Sbjct: 548 SSIIDMYAKGGCIGLSQRIFDRL--REKDVASWNVIIAGYGIHGRGKEALELFEKMLRL 604



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 145/342 (42%), Gaps = 58/342 (16%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I V  R H++  A   F        + V  + +I  Y   G   ++R VFD++   N++ 
Sbjct: 14  IEVGRRLHEMVSASTQF------CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 92  WTSLISGYFKARQVDEGRRLFDRM-------------PLKLKNVVSWTTVVLGCAHNGLI 138
           W +++S Y +    ++   +F  +             P  +K       + LG   +G+ 
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
            K++++S                           D+   NA+I  Y   G + +A ++F 
Sbjct: 128 TKMDLVS---------------------------DVFVGNALIAMYGKCGLVEEAVKVFE 160

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF--QSRFMPNETTCTSILTSCEG---M 253
            MP+RN+ +WN++I  ++ NG    +      M   +  F+P+  T  ++L  C G   +
Sbjct: 161 HMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDI 220

Query: 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
            + M  H LA++LG  +E  +       Y    +     ++ A+L F++ + K++VSW +
Sbjct: 221 EKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF-----LSEAQLLFDKNDKKNIVSWNS 275

Query: 314 MILAYSNHGHGFQVFRLFARML--KSGTKPDEITFVGVLSDC 353
           MI  Y+      + F L  +M    +  K DE T + VL  C
Sbjct: 276 MIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 31/307 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A+I  Y K G V+EA KVF+ + E N+ SW S+I G+ +   + E    F  M 
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 117 LK----LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +     + +V +  TV+  CA    I K   +    +  GL                 N+
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL-----------------NE 237

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           +++  N++I  Y     +++A  LF+   ++N+ +WN+MI  YAR         LL  M 
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 233 --QSRFMPNETTCTSILTSC--EGMLENMLA-HALAIRLGFEQETSLTYKCTCHYVFWDW 287
              ++   +E T  ++L  C     L+++   H  + R G +    +       Y     
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCG- 356

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
                + S+   F+ ++ K V SW A++  Y+ +    +   L+ +M  SG  PD  T  
Sbjct: 357 ----ALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 412

Query: 348 GVLSDCS 354
            +L  CS
Sbjct: 413 SLLLACS 419



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN-L 230
            D V    +IT Y   G+ + +  +F+ + ++N++ WNA++  Y RN     AM + + L
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 231 MFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           +  +   P+  T   ++ +C G+L+     + H +A ++    +  +       Y     
Sbjct: 92  ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMY----- 146

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML--KSGTKPDEIT 345
           G    V  A   FE +  +++VSW ++I  +S +G   + F  F  ML  +    PD  T
Sbjct: 147 GKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVAT 206

Query: 346 FVGVLSDCSHAGLVEKGRKTFNL 368
            V VL  C+    +EKG     L
Sbjct: 207 LVTVLPVCAGEEDIEKGMAVHGL 229


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/554 (27%), Positives = 252/554 (45%), Gaps = 74/554 (13%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------- 51
           S +   GK+ +A KLFDEM   D +S   +   FLRN +      L + M          
Sbjct: 98  SLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDHAT 157

Query: 52  ----------PE----------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                     PE                  + I   + +I  Y K G     R VFD + 
Sbjct: 158 LTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMS 217

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEV 143
             NV + T++ISG  +    ++G RLF  M   L   N V++ + +  C+ +  I + + 
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQ 277

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
           I       G+E                  ++   +A++  Y   G++  A  +F    + 
Sbjct: 278 IHALLWKYGIE-----------------SELCIESALMDMYSKCGSIEDAWTIFESTTEV 320

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---- 259
           +  +   ++   A+NG E  A++    M Q+    +    +++L      ++N L     
Sbjct: 321 DEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGV--SFIDNSLGLGKQ 378

Query: 260 -HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
            H+L I+  F   T +       Y         D+  ++  F R+  ++ VSW +MI A+
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCG-----DLTDSQTVFRRMPKRNYVSWNSMIAAF 433

Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
           + HGHG    +L+  M     KP ++TF+ +L  CSH GL++KGR+  N M   +G +PR
Sbjct: 434 ARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPR 493

Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
            EHY+C+ D+L RAG +KEA   +  +P  + D  +  ALLGAC  HGD  + +Y  E+L
Sbjct: 494 TEHYTCIIDMLGRAGLLKEAKSFIDSLPL-KPDCKIWQALLGACSFHGDTEVGEYAAEQL 552

Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL--- 494
            +  P SS A++L AN++++RG+W E A+  K+M+   V K    S IE++ K H+    
Sbjct: 553 FQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVE 612

Query: 495 --LAPMREMGYVVL 506
             L P  E  Y VL
Sbjct: 613 DKLHPQAEAIYDVL 626



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 169/405 (41%), Gaps = 34/405 (8%)

Query: 55  QRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
            RN +V  ++++  Y K G++ +A K+FDE+   +V S   +  G+ + R+ + G  L  
Sbjct: 86  HRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLK 145

Query: 114 RMPLKLKNVVSWTTVVLGCA---HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
           RM              LG     H  L   L V      C  L    +  LA    +   
Sbjct: 146 RM--------------LGSGGFDHATLTIVLSVCDTPEFC--LVTKMIHALA---ILSGY 186

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +K+I   N +IT+Y   G       +F+ M  RNV T  A+I     N      ++L +L
Sbjct: 187 DKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSL 246

Query: 231 MFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
           M +    PN  T  S L +C G   ++E    HAL  + G E E  L  +     ++   
Sbjct: 247 MRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESE--LCIESALMDMYSKC 304

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
           G    +  A   FE     D VS T +++  + +G   +  + F RML++G + D     
Sbjct: 305 G---SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVS 361

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            VL        +  G++  +L+ +   F       + L ++  + G + ++  V  +MP 
Sbjct: 362 AVLGVSFIDNSLGLGKQLHSLVIKR-KFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP- 419

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
            +R++V   +++ A   HG    A  + E +  L+   +    LS
Sbjct: 420 -KRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLS 463


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 245/513 (47%), Gaps = 72/513 (14%)

Query: 10  VKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           + EA  +++EM     DPV   +++  +LR  +L  A  +F  M  + R++++ SAM+DG
Sbjct: 147 LHEAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM--TVRDVISWSAMVDG 204

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
             K G V EAR+VFD + E NV SWTS+I GY K     +G  LF  M  +    N  + 
Sbjct: 205 LCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTL 264

Query: 126 TTVVLGCA-----------HNGLIA----------------------------------K 140
           +  +  CA           HN +I+                                  +
Sbjct: 265 SVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQ 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +++SW ++ TG  ++ M + A   F  M  KD V+W +M+  + + G M ++ ELF  M
Sbjct: 325 KDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM 384

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENM 257
           P ++   W A+I  +  NG   +A++    M Q    PN    + +L++   +    +  
Sbjct: 385 PVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGR 444

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWT 312
            AHA +I +G+  ++++       Y              RLA     F  +    +++  
Sbjct: 445 QAHAYSINMGWVFDSAVHTSLVSMYA----------KCGRLAEAYHVFSSISNPSLIAIN 494

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           +MI A+  HG      +LF +M  +G KP+ +TF+G+L+ C+ AG V++G   F  M   
Sbjct: 495 SMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPV 554

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMA 431
           YG +P  EHY+C+ D+L RAG + EA+ +++ MP  + DH     ALL A  LH ++  A
Sbjct: 555 YGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP--QNDHSDAWAALLSASSLHSNLAFA 612

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
               ++L+E  P  + AY + + + ++ G  DE
Sbjct: 613 KIAAQKLLEKDPYDATAYTVLSRMFSSAGMEDE 645



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 195/448 (43%), Gaps = 77/448 (17%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + R   L  A+ LF  MP   R++++ +A++  Y   G +  AR VFD++   N 
Sbjct: 43  ALLTSYGRRGRLRDAQLLFDQMP--SRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----- 144
            SW +L+S Y +A +      LF +MP   KN VS+  ++ G A   ++ + E++     
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMP--AKNAVSYGAIISGLAKAEMLHEAELVYEEMP 158

Query: 145 -SW------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
             W        +  G  R     +A   F  M  +D+++W+AM+      G++++A  +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---ML 254
           + MP+RNV +W +MI  Y + G     + L   M +     N TT +  L +C       
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW------------------------GF- 289
           E +  H L I +GFE +  L       Y  + W                        G+ 
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYV 338

Query: 290 QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF----------------- 328
           Q D V  A + F+ +  KD VSWT+M++ ++N G      ++F                 
Sbjct: 339 QHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISS 398

Query: 329 -----------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
                      R F RM + G KP+ I F  +LS  +   ++ +GR+  +  S   G+  
Sbjct: 399 FITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQA-HAYSINMGWVF 457

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKM 405
            +  ++ L  +  + G++ EA  V S +
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSI 485



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
            S +   G++ EA  +F  +S P  ++  SMIT F+++  +  A  LF  M  +  + N 
Sbjct: 466 VSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNH 525

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           V    ++ G  +AG V +    F+ +      E N   +T ++    +A  + E   + +
Sbjct: 526 VTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMIN 585

Query: 114 RMP 116
            MP
Sbjct: 586 SMP 588


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 222/418 (53%), Gaps = 26/418 (6%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           +E N+Y  T L+  Y    +V+ G R+F+ +P KL NVV+W +++ G  +N   +     
Sbjct: 137 FEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIP-KL-NVVAWGSLISGFVNNNRFSDAIEA 194

Query: 145 SWTTMCTGLERN---------AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
                  G++ N         A  +    Y       +++   ++I  Y   G+M  A  
Sbjct: 195 FREMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARY 254

Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS-----C 250
           LF+ MP+RN+ +WN++I  Y++NG    AM + + M      P++ T  S++ +     C
Sbjct: 255 LFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGC 314

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
             + + +  HA   + GF ++ ++   C    ++   G   +  SA+  FE LE KD ++
Sbjct: 315 SQLGQTI--HAYVSKTGFVKDAAIV--CALVNMYAKTG---NAESAKKMFEDLEKKDTIA 367

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           WT +I+  ++HGHG +   +F RM + G   PD IT++GVL  CSH GLVE+G++ F  M
Sbjct: 368 WTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEM 427

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
              YG +P  EHY C+ DIL RAG+ +EA R+V  MP     + + GALL  C +H ++ 
Sbjct: 428 RDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTAN-IWGALLNGCEIHENLD 486

Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
           +AD I   + E +   SG YVL +N++A  G W +   +R+ M+ +RV K+ + S +E
Sbjct: 487 LADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSVE 544



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 122/285 (42%), Gaps = 50/285 (17%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
           + C G+V    ++F+++ + + V+  S+I+ F+ N+    A   FR M            
Sbjct: 151 YMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIM 210

Query: 52  ------------PESQR----NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
                       P  Q     N++  +++ID Y K G +  AR +FD + E N+ SW S+
Sbjct: 211 VDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSI 270

Query: 96  ISGYFKARQVDEGRRLF-DRMPLKL-KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
           I+GY +    +E   +F D + L +  + V++ +V+      G             C+ L
Sbjct: 271 ITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQG-------------CSQL 317

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
            +     +++  FV    KD     A++  Y   GN   A ++F  + +++   W  +I 
Sbjct: 318 GQTIHAYVSKTGFV----KDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVII 373

Query: 214 RYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLE 255
             A +G    A+ +   M  +    P+  T   +L +C   G++E
Sbjct: 374 GLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVE 418



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 28/260 (10%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N++ A  +F  +   +V+ WN+MI  Y+ +     A+     M +  + P+  T   +L 
Sbjct: 55  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 114

Query: 249 SCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFW----DWGFQLDVNSARLAFE 301
           +C G+ +       H   ++ GFE    ++  C  H        +WG ++        FE
Sbjct: 115 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVS-TCLLHMYMCCGEVNWGLRV--------FE 165

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
            +   +VV+W ++I  + N+         F  M   G KP+E   V +L  C        
Sbjct: 166 DIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACG------- 218

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
             + F+   ++  F+      + L D+  + G ++ A  +   MP  ER+ V   +++  
Sbjct: 219 --RCFDPYCQS-KFEFNVILATSLIDMYAKCGDMRTARYLFDGMP--ERNLVSWNSIITG 273

Query: 422 CRLHGDVRMADYIGERLIEL 441
              +GD   A  +   +++L
Sbjct: 274 YSQNGDAEEAMCMFSDMLDL 293



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           ++++ AR  FE ++   V  W +MI  YSN  +  +    +  ML+ G  PD  TF  VL
Sbjct: 54  MNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVL 113

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             CS    ++ G      + +  GF+      +CL  +    G+V   +RV   +P
Sbjct: 114 KACSGLRDIQFGSCVHGFVVKT-GFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIP 168


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 245/513 (47%), Gaps = 72/513 (14%)

Query: 10  VKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           + EA  +++EM     DPV   +++  +LR  +L  A  +F  M  + R++++ SAM+DG
Sbjct: 147 LHEAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM--TVRDVISWSAMVDG 204

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
             K G V EAR+VFD + E NV SWTS+I GY K     +G  LF  M  +    N  + 
Sbjct: 205 LCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTL 264

Query: 126 TTVVLGCA-----------HNGLIA----------------------------------K 140
           +  +  CA           HN +I+                                  +
Sbjct: 265 SVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQ 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +++SW ++ TG  ++ M + A   F  M  KD V+W +M+  + + G M ++ ELF  M
Sbjct: 325 KDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM 384

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENM 257
           P ++   W A+I  +  NG   +A++    M Q    PN    + +L++   +    +  
Sbjct: 385 PVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGR 444

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWT 312
            AHA +I +G+  ++++       Y              RLA     F  +    +++  
Sbjct: 445 QAHAYSINMGWVFDSAVHTSLVSMYA----------KCGRLAEAYHVFSSISNPSLIAIN 494

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           +MI A+  HG      +LF +M  +G KP+ +TF+G+L+ C+ AG V++G   F  M   
Sbjct: 495 SMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPV 554

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMA 431
           YG +P  EHY+C+ D+L RAG + EA+ +++ MP  + DH     ALL A  LH ++  A
Sbjct: 555 YGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP--QNDHSDAWAALLSASSLHSNLAFA 612

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
               ++L+E  P  + AY + + + ++ G  DE
Sbjct: 613 KIAAQKLLEKDPYDATAYTVLSRMFSSAGMEDE 645



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 204/471 (43%), Gaps = 79/471 (16%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + R   L  A+ LF  MP   R++++ +A++  Y   G +  AR VFD++   N 
Sbjct: 43  ALLTSYGRRGRLRDAQLLFDQMPS--RDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----- 144
            SW +L+S Y +A +      LF +MP   KN VS+  ++ G A   ++ + E++     
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMP--AKNAVSYGAIISGLAKAEMLHEAELVYEEMP 158

Query: 145 -SW------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
             W        +  G  R     +A   F  M  +D+++W+AM+      G++++A  +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML--- 254
           + MP+RNV +W +MI  Y + G     + L   M +     N TT +  L +C       
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW------------------------GF- 289
           E +  H L I +GFE +  L       Y  + W                        G+ 
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYV 338

Query: 290 QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF----------------- 328
           Q D V  A + F+ +  KD VSWT+M++ ++N G      ++F                 
Sbjct: 339 QHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISS 398

Query: 329 -----------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
                      R F RM + G KP+ I F  +LS  +   ++ +GR+  +  S   G+  
Sbjct: 399 FITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQA-HAYSINMGWVF 457

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
            +  ++ L  +  + G++ EA  V S +       + + +++ A   HG V
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSIS--NPSLIAINSMITAFVQHGFV 506



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
            S +   G++ EA  +F  +S P  ++  SMIT F+++  +  A  LF  M  +  + N 
Sbjct: 466 VSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNH 525

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           V    ++ G  +AG V +    F+ +      E N   +T ++    +A  + E   + +
Sbjct: 526 VTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMIN 585

Query: 114 RMP 116
            MP
Sbjct: 586 SMP 588


>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 523

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 239/460 (51%), Gaps = 38/460 (8%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           D +  +S+I+++ +   +  A  +F  MPE  RN+   +AMI GY+  G    A  +F+E
Sbjct: 80  DVMVGSSLISMYGKWGCVVSARKVFDEMPE--RNVATWNAMIGGYMGNGDAVSASGLFEE 137

Query: 84  IYEG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           I    N  +W  ++ GY K +++++ R LF+RMP +LKNV +W+ V+LG           
Sbjct: 138 ISVCRNTVTWIEMMKGYGKRKEIEKARELFERMPFELKNVKAWS-VMLGV---------- 186

Query: 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
            +S   M          + AR++F  +P K+   W+ MI+ Y   G++ +A+ +F  +  
Sbjct: 187 YVSHRKM----------EDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFA 236

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE-NMLA 259
           R++  WN +I  YA+NG  G A+     M    + P+  T +S+L++C   G L+     
Sbjct: 237 RDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREV 296

Query: 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYS 319
           H+L  R G E    ++      Y         D+ +A   FE L  + +  W +MI   +
Sbjct: 297 HSLINRKGIELNQFVSNALIDMYAKCG-----DLENATSVFESLSLRSLACWNSMISCLA 351

Query: 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
            HG G +   +F  M     KPDEITF+ VL+ C H G + +G K F+ M +    KP  
Sbjct: 352 IHGKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEM-KTQDVKPNV 410

Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
           +H+ CL  +L R+G++KEA R+V +MP    D  VLGALLGAC++H D  +A+ + + ++
Sbjct: 411 KHFGCLIHLLGRSGKLKEAYRLVREMPVKPND-TVLGALLGACKVHMDTEIAEQVMKIIV 469

Query: 440 ---ELQPSSSGAYVLS-ANVHAARGEWDEFAQVRKKMERR 475
               +  S    ++ S +N++A    W+    +R +ME+R
Sbjct: 470 TVGSITNSDCENHLASISNLYAHTERWETAEALRVEMEKR 509



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 7   TGKVKEATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMI 65
            G    A+ LF+E+S   + V+   M+  + +  ++ KA  LF  MP   +N+ A S M+
Sbjct: 125 NGDAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFERMPFELKNVKAWSVML 184

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSW 125
             YV   ++++ARK F++I E N + W+ +ISGYF+   V E   +F R  +  +++V W
Sbjct: 185 GVYVSHRKMEDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYR--VFARDLVIW 242

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--------------KLAREYFVQMPN 171
            T++ G A NG         +     G E +A+T               + RE    +  
Sbjct: 243 NTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINR 302

Query: 172 KDI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           K I       NA+I  Y   G++  A+ +F  +  R++  WN+MI   A +G    A+++
Sbjct: 303 KGIELNQFVSNALIDMYAKCGDLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEM 362

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
              M      P+E T  ++LT+C
Sbjct: 363 FRTMGSLDLKPDEITFLAVLTAC 385


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 220/462 (47%), Gaps = 59/462 (12%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +I   +A+I   V  G +D ARK+FD+    ++ SW S+I+GY +     E    +  M 
Sbjct: 113 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 172

Query: 117 LK--LKNVVSWTTVVLGCAH----------------NGLIAKLEVISWTTMCTGLERNAM 158
           ++    + V+   VV  CA                 NGL  KL V     +     +   
Sbjct: 173 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGL--KLTVPLANALMDMYMKCGN 230

Query: 159 TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
            + AR+ F  M NK +V+W  M               LF+ MP ++V  WNAMI  Y   
Sbjct: 231 LESARKLFDSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHA 275

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-------AHALAIRLGFE 269
                A+ L N M      P+E T  S L++C   G L+  +        H L++ +   
Sbjct: 276 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALG 335

Query: 270 QETSLTY-KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                 Y KC              +  A   F+ L  ++ ++WTA+I   + HG+     
Sbjct: 336 TALIDMYAKCG------------KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 383

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
             F+ M+ +   PDE+TF+G+LS C H GLVE+GRK F+ MS  +   P+ +HYSC+ D+
Sbjct: 384 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 443

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
           L RAG ++EA  ++  MP  E D VV GAL  ACR+HG+V M +    +L+++ P  SG 
Sbjct: 444 LGRAGLLEEAEELIKSMPI-EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI 502

Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           YVL AN++     W E  + RK M +R V+K    S IEV G
Sbjct: 503 YVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNG 544



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 41/363 (11%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           N +SW   I G+  +    E   L+ R              VL C       K +  ++ 
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKR--------------VLQCDG----TKPDNYTYP 83

Query: 148 TMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +     R ++ ++  E    +     + DI   NA+I   V  G++  A ++F+    R
Sbjct: 84  LLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVR 143

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LA 259
           ++ +WN+MI+ Y R G    A+     M      P+E T   +++SC   LE++     +
Sbjct: 144 DLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSC-AQLEDLDLGRES 202

Query: 260 HALAIRLGFEQETSLT-------YKC----TCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
           H      G +    L         KC    +   +F     +  V+   + F+ +  KDV
Sbjct: 203 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDV 262

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           V W AMI  Y +   G +   LF  M      PDE+T V  LS CS  G ++ G    + 
Sbjct: 263 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 322

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
           + + +         + L D+  + G++ +A++V  ++P   R+ +   A++    LHG+ 
Sbjct: 323 IEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPG--RNSLTWTAIISGLALHGNA 379

Query: 429 RMA 431
             A
Sbjct: 380 HGA 382



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 76/386 (19%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES------- 54
           G +  A K+FD+    D VS  SMI  ++R     +A   +R M      P+        
Sbjct: 128 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 187

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   +  +   +A++D Y+K G ++ ARK+FD +    + 
Sbjct: 188 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 247

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH-----------NGLIA 139
           SWT++               LFD MP   K+VV W  ++ G  H           N + A
Sbjct: 248 SWTTM---------------LFDEMP--DKDVVPWNAMIGGYVHANRGKEALALFNEMQA 290

Query: 140 ------KLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQ 192
                 ++ ++S  + C+ L    +      Y  +   + ++    A+I  Y   G + +
Sbjct: 291 MNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITK 350

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC-- 250
           A ++F  +P RN  TW A+I   A +G    A+   + M  +  MP+E T   +L++C  
Sbjct: 351 AIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 410

Query: 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
            G++E    +   +   F     L +  +C          L+     +    +EA D V 
Sbjct: 411 GGLVEEGRKYFSQMSSKFNLSPKLKHY-SCMVDLLGRAGLLEEAEELIKSMPIEA-DAVV 468

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK 336
           W A+  A   HG+     R  +++L+
Sbjct: 469 WGALFFACRIHGNVLMGERAASKLLQ 494



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 39/238 (16%)

Query: 11  KEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRNIVAESAM 64
           KEA  LF+EM      PD V+  S ++    L   D+      +    E   N+   +A+
Sbjct: 279 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTAL 338

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           ID Y K G++ +A +VF E+   N  +WT++ISG             F  M     + + 
Sbjct: 339 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 398

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-----DIVAW 177
           V++  ++  C H GL+ +                      R+YF QM +K      +  +
Sbjct: 399 VTFLGLLSACCHGGLVEE---------------------GRKYFSQMSSKFNLSPKLKHY 437

Query: 178 NAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNL 230
           + M+     AG + +A EL   MP + +   W A+      +G     E AA KLL +
Sbjct: 438 SCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM 495


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 192/352 (54%), Gaps = 26/352 (7%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-P 220
           A++ F +MP + +V+  AMIT Y   GN+  A  LF+ M +R++ +WN MID Y+++G P
Sbjct: 178 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFP 237

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLGFEQETS 273
             A M    L+   +  P+E T  + L++C   G LE     ++  ++  IRL  +  T+
Sbjct: 238 SDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTA 297

Query: 274 LT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           L     KC              +  A L F     KD+V+W AMI  Y+ HG+     RL
Sbjct: 298 LIDMYSKCG------------SLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRL 345

Query: 331 FARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           F  M   +G +P +ITF+G L  C+HAGLV +G + F  M + YG KP+ EHY CL  +L
Sbjct: 346 FDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLL 405

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            RAGQ+K A  ++  M   E D V+  ++LG+C+LHG+  +   I E LI    S+SG Y
Sbjct: 406 GRAGQLKRAYEIIKNM-NMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIY 464

Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           VL +N++A  G+++  A+VR  M E+ + K    S IE+  K H   A  RE
Sbjct: 465 VLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDRE 516



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 143/327 (43%), Gaps = 49/327 (14%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           AY   G +  +  LF+     +++ + A I+  + NG +  A  L   +  S+  PNE T
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 243 CTSILTSCEGMLENML-AHALAIRLGFE---------------------------QETSL 274
            +SIL SC      ++  H L   LG +                            E SL
Sbjct: 131 FSSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSL 190

Query: 275 ---TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
              T   TC      +  Q +V +AR  F+R+  +D+VSW  MI  YS HG       LF
Sbjct: 191 VSSTAMITC------YAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLF 244

Query: 332 ARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
            ++L  G  KPDEIT V  LS CS  G +E GR   ++   +   +   +  + L D+  
Sbjct: 245 QKLLADGKPKPDEITVVAALSACSQIGALETGR-WIHVFVNSSRIRLNVKVCTALIDMYS 303

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG----DVRMADYIGERLIELQPSS- 445
           + G ++EA+ V +  P   +D V   A++    +HG     +R+ D + + +  LQP+  
Sbjct: 304 KCGSLEEAVLVFNDTP--RKDIVAWNAMITGYAMHGYSQDALRLFDEM-QGITGLQPTDI 360

Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM 472
           +    L A  HA  G  +E  Q+ + M
Sbjct: 361 TFIGTLQACAHA--GLVNEGIQIFESM 385



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 87/194 (44%), Gaps = 19/194 (9%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP     ++ ++ +  D+  A+ +F  MPE  R++V+ +AMI  Y K G V+ AR +FD 
Sbjct: 158 DPYVATGLVDIYAKGGDVVSAQKVFDRMPE--RSLVSSTAMITCYAKQGNVEAARALFDR 215

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E ++ SW  +I GY +     +   LF ++    K      TVV   +    I  LE 
Sbjct: 216 MCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALET 275

Query: 144 ISW-------------TTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
             W               +CT L     +    + A   F   P KDIVAWNAMIT Y  
Sbjct: 276 GRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAM 335

Query: 187 AGNMAQASELFNLM 200
            G    A  LF+ M
Sbjct: 336 HGYSQDALRLFDEM 349


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 197/360 (54%), Gaps = 17/360 (4%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNG 219
           AR+ F +M  +D+  WNA++  Y   G M +A  L  +MP   RN  +W  +I  YAR+G
Sbjct: 170 ARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSG 229

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTY 276
               A+++   M      P+E T  ++L++C  +    L   +   +   G  +  SL  
Sbjct: 230 RASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNN 289

Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
                Y         ++  A   FE +  ++VV+WT +I   + HGHG +   +F RM+K
Sbjct: 290 AVIDMY-----AKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVK 344

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G KP+++TF+ +LS CSH G V+ G + FN M   YG  P  EHY C+ D+L RAG+++
Sbjct: 345 AGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLR 404

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA  V+  M P E +  + G+LL A  +H D+ + +    +LI+L+P++SG Y+L AN++
Sbjct: 405 EAEEVIKSM-PFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLY 463

Query: 457 AARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
           +  G WDE   +RK M+   VKK+A  S IEV+ + +  ++     P  E  + +L+E+D
Sbjct: 464 SNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDLSHPQVEKIHELLQEMD 523



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           + +I  Y   G + +ARKVFDE+   +V  W +L++GY K  ++DE R L + MP  ++N
Sbjct: 155 TGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRN 214

Query: 122 VVSWTTVVLGCAHNGLIAK-LEVISWTTM----------------CTGLERNAMTKLARE 164
            VSWT V+ G A +G  ++ +EV     M                C  L    + +    
Sbjct: 215 AVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICS 274

Query: 165 YFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           Y      N+ +   NA+I  Y  +GN+ +A E+F  + +RNV TW  +I   A +G    
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAE 334

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
           A+ + + M ++   PN+ T  +IL++C
Sbjct: 335 ALVMFDRMVKAGVKPNDVTFIAILSAC 361



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 25/220 (11%)

Query: 2   SQFGCTGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--Q 55
           S +  +G+  EA ++F  M      PD V+  ++++       L   E +   +      
Sbjct: 223 SGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMN 282

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           R +   +A+ID Y K+G + +A +VF+ + E NV +WT++I+G        E   +FDRM
Sbjct: 283 RAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRM 342

Query: 116 -PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
               +K N V++  ++  C+H G         W  +      +  +K          N +
Sbjct: 343 VKAGVKPNDVTFIAILSACSHVG---------WVDLGNRFFNSMRSKYG-------INPN 386

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
           I  +  MI     AG + +A E+   MP + N   W +++
Sbjct: 387 IEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLL 426


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 242/486 (49%), Gaps = 31/486 (6%)

Query: 19  EMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDE 76
           EM  P+ ++   ++   +  +D+     L   + +S    N    SA++D Y K G VDE
Sbjct: 172 EMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDE 231

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAH 134
           A+  FDE+   ++  W  ++S Y       +   +F  M L+    +  ++T+++  C  
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSC-- 289

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
            G++             GL +     + R  F    + D++  +A++  Y    N+  A 
Sbjct: 290 -GVLGS----------CGLGKQVHGLIIRLSF----DLDVLVASALVDMYSKNENIEDAR 334

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
           + F+ M  +N+ +W  M   Y ++G     M+LL  M +    P+E    SIL+SC  + 
Sbjct: 335 KAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLS 394

Query: 255 ---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
              E +  HA  +  GFE   S+       Y          + SA  +F  +   D++SW
Sbjct: 395 ATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCG-----SIGSAFQSFSSVAEPDIISW 449

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           T+++ AY+ HG   Q   +F ++L S  +PD++ F+GVLS C+H G V +G   FNLM  
Sbjct: 450 TSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMIN 509

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            Y   P +EHY+ + D+L RAG + EA+ +++ MP   R    LGA LGAC+++ +V +A
Sbjct: 510 VYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSD-TLGAFLGACKVYRNVGLA 568

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK-KVASFSQIEVKGK 490
            +  E+L  ++P+  G Y L +N++A+ G W + A+VRK M  R   KV   S +E  G+
Sbjct: 569 RWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMETAGE 628

Query: 491 DHTLLA 496
            HT ++
Sbjct: 629 VHTFVS 634



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 179/414 (43%), Gaps = 59/414 (14%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF----KARQVDEGRRLFDRMPLKLKNVV 123
           YVK    ++  K+FDE+   NV SW +LI G      K   V  G   F +M L++   +
Sbjct: 118 YVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEM---M 174

Query: 124 SWTTVVLGCAHNGLI-AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
           +   + L    NGL+ A +E+        G+ R     + +  F    + +    +A++ 
Sbjct: 175 APNCITL----NGLLRASIELND-----VGICRQLHCFILKSGF----DSNCFVGSALVD 221

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           +Y   G + +A   F+ +  R++  WN M+  YA NG +G A  +  LM       +  T
Sbjct: 222 SYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFT 281

Query: 243 CTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
            TS++ SC G+L +       H L IRL F+ +  +       Y         ++  AR 
Sbjct: 282 FTSMINSC-GVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMY-----SKNENIEDARK 335

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS---- 354
           AF+ +  K++VSWT M + Y  HG G +  RL   M++  T PDE+    +LS C     
Sbjct: 336 AFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSA 395

Query: 355 -------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
                  HA +VE G + F  ++ A            L     + G +  A +  S +  
Sbjct: 396 TSEVVQVHAYVVENGFEAFLSIANA------------LVSAYSKCGSIGSAFQSFSSVA- 442

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSSSGAY-VLSANVHAA 458
            E D +   +L+GA   HG  +    + E+++   ++P       VLSA  H  
Sbjct: 443 -EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGG 495


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 224/451 (49%), Gaps = 29/451 (6%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + + +  + +++ Y K G +  A KVFDEI E ++ SW  +I    +  + ++   +F  
Sbjct: 30  ETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLE 89

Query: 115 MPLKLKNVVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +      +T  +VV  CA  G +           C  L   A+  +         + 
Sbjct: 90  MQREGSPCSEFTVSSVVCACAAKGDV---------FFCRQLHAFAIKAVV--------DA 132

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+    A+I  Y   G++  AS +F  MP+RN  TW++++  + +N      + L     
Sbjct: 133 DVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGK 192

Query: 233 QSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +     N+   +S++ +C G+   +E    HA+  R GF     +       Y       
Sbjct: 193 EMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCG--- 249

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              +  A + F  +E K+VV W A+I  ++ H    +V  LF  M ++G +PDE+T+V V
Sbjct: 250 --SIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAV 307

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS C H GLV+KGR  F+LM+R +   P   HYSC+ DIL R G V EA  +++KM P  
Sbjct: 308 LSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKM-PFA 366

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
               + G+LL +CR+HG++ +A+   + L E++P   G YVL AN +AA  +W+E A+ R
Sbjct: 367 ATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKAR 426

Query: 470 KKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
           K ++   + K    S IE+K K HT +A  R
Sbjct: 427 KSLKGSEILKERGKSWIEIKDKVHTFMAGER 457



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 58/283 (20%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-----PESQ------- 55
           G ++ A K+FDE+ +   VS   MI   ++N +  KA  +F  M     P S+       
Sbjct: 47  GLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVV 106

Query: 56  -------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                     ++   +A+ID Y K G +++A  VF+ + E N  
Sbjct: 107 CACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDV 166

Query: 91  SWTSLISGYFKARQVDEGRRLFDR---MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +W+S+++G+ +    +EG  LF R   M L+  N    ++V+  CA  GL A +E     
Sbjct: 167 TWSSIVAGFVQNELYEEGLVLFARGKEMGLE-NNQFMISSVIRACA--GLAALIE----- 218

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                  R     + R  F   PN  + +  A++  Y   G++ +A  LF  + ++NV  
Sbjct: 219 ------GRQVHAIVCRTGF--GPNNFVAS--ALVDMYAKCGSIEEAYVLFCNIEKKNVVL 268

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           WNA+I  +A++      M L   M Q+   P+E T  ++L++C
Sbjct: 269 WNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSAC 311


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 218/442 (49%), Gaps = 41/442 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   +A++D Y K G +  ARKVF+++ + ++ SWT+LI GY +   +     LF  MP
Sbjct: 136 DMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMP 195

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
            +                       +  ++  +  G  +    + AR  F +MP +++++
Sbjct: 196 GR-----------------------DSAAFNLLIDGYVKVGDMESARSLFDEMPERNVIS 232

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSR 235
           W +MI  Y + G++  A  LF+ MP++N+ +WNAMI  Y +N     A+KL   L   + 
Sbjct: 233 WTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTV 292

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQ 290
           F PNE T  SIL +        +A   A+ LG     F Q   L           D   +
Sbjct: 293 FEPNEVTVVSILPA--------IATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLK 344

Query: 291 L-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +++ AR  F  +  K+  +W A+I  ++ +G   +    F+ M + G KP++IT  GV
Sbjct: 345 CGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGV 404

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           LS CSH GLVE+G+  F  M  + G  P+ EHY CL D+L RAG + EA  ++  M P E
Sbjct: 405 LSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLDEAENLIKSM-PFE 462

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
            + ++L +   AC    DV  A  +  + + ++P ++G YV+  N++A    W +  ++ 
Sbjct: 463 ANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEIN 522

Query: 470 KKMERR-VKKVASFSQIEVKGK 490
             M RR  KK    S IEV  +
Sbjct: 523 GLMRRRGAKKEVGSSAIEVDSR 544


>gi|302787216|ref|XP_002975378.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
 gi|300156952|gb|EFJ23579.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
          Length = 561

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 234/502 (46%), Gaps = 61/502 (12%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
           + +AT++F  M + D +S   M+  F +N DL  A + F  MPE  R+IV  + ++ G+V
Sbjct: 65  LAQATEIFGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPE--RDIVPWTGILQGFV 122

Query: 70  KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
             G+ DEA+ VFD + + +V  W++++    +  +VD+ + LFDR P    NVVSWT ++
Sbjct: 123 DTGQPDEAKSVFDRMPQQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQL--NVVSWTAML 180

Query: 130 LGCAHNGLIAKLEVI------------------SWTTMCTGLERNAMTKLAREYFVQMPN 171
            G AH+G I + E++                   + TM + L      K AR    +MP 
Sbjct: 181 GGYAHSGRIREAELLFRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARALLEKMPE 240

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV-------------------------- 205
           +  VAW  ++ +Y  AG+M +A EL+  MP +NV                          
Sbjct: 241 QSPVAWTIVLASYAQAGHMYEARELYVAMPAKNVVASTAMVQGYAQGGHIRDCEELFFET 300

Query: 206 ------WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
                   WN+++  Y++NG    A  + + + Q   M + ++    ++ C  +  N + 
Sbjct: 301 MAERDSMAWNSLLGAYSQNGLASNAEAVFSRIPQYDSMEDASSVLERMSHCSLISWNTML 360

Query: 260 HALAIRLGFEQETSLTYKCTCHYVF-WDWGFQLDVNSARLA-----FERLEAKDVVSWTA 313
              A      +  +L        +F W+       +   LA     FE + +K++ SWT 
Sbjct: 361 GGFAQSKMVAEARALFQTMPVQDIFSWNAMVAAHAHVGHLADAMRTFEAMASKNLFSWTI 420

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I  Y+  GH      LF  M   G +PD I F+ V+  CSH GLVE+  + F  M   Y
Sbjct: 421 LIAGYALAGHQSSAISLFQSMQLEGERPDGIVFMCVIHACSHLGLVEEALQNFYQMRADY 480

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
             +P   H+ C+ D+  RAGQ ++A  ++  M P   D +    LLG+C++  D+++  +
Sbjct: 481 QIQPDENHFYCMVDLFARAGQQQDARELIESM-PFVPDSLAWQTLLGSCKVSRDIQLGKH 539

Query: 434 IGERLIELQPSSSGAYVLSANV 455
              +   + P  +  YVL +N+
Sbjct: 540 AANQASVISPEKAATYVLLSNI 561



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 143/322 (44%), Gaps = 32/322 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWT-SLISGYFKARQVDEGRRLFDRMPLKLKNV 122
           +I  Y + G++DEA+ VFD I   N YS+   L+    +   + +   +F RMP   ++V
Sbjct: 23  LIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDLAQATEIFGRMP--ERDV 80

Query: 123 VSWTTVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           +SWT +VL  A NG +           + +++ WT +  G         A+  F +MP +
Sbjct: 81  LSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVDTGQPDEAKSVFDRMPQQ 140

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+V W+AM+ A      + QA  LF+  PQ NV +W AM+  YA +G    A  L   M 
Sbjct: 141 DVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREAELLFRKMP 200

Query: 233 Q-------SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285
           Q        R M +  T  S L   + + +   A AL  ++  +   + T       V  
Sbjct: 201 QHDAISRPERDMGDYITMLSALAETKRLKD---ARALLEKMPEQSPVAWT------IVLA 251

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
            +     +  AR  +  + AK+VV+ TAM+  Y+  GH      LF    ++  + D + 
Sbjct: 252 SYAQAGHMYEARELYVAMPAKNVVASTAMVQGYAQGGHIRDCEELF---FETMAERDSMA 308

Query: 346 FVGVLSDCSHAGLVEKGRKTFN 367
           +  +L   S  GL       F+
Sbjct: 309 WNSLLGAYSQNGLASNAEAVFS 330



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 17/150 (11%)

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           D+  A   F R+  +DV+SWT M+LA++ +G     +  F  M     + D + + G+L 
Sbjct: 64  DLAQATEIFGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEM----PERDIVPWTGILQ 119

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR---RAGQVKEAMRVVSKMPPH 408
                G  ++ +  F+ M +        +   C + +L+   R  +V +A  +  + P  
Sbjct: 120 GFVDTGQPDEAKSVFDRMPQ--------QDVVCWSAMLQAQARNDRVDQAKLLFDRFP-- 169

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERL 438
           + + V   A+LG     G +R A+ +  ++
Sbjct: 170 QLNVVSWTAMLGGYAHSGRIREAELLFRKM 199


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/499 (29%), Positives = 245/499 (49%), Gaps = 40/499 (8%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEA--LFRAMPESQRNIVA 60
            G   +A  + DEM     + + V+  S++ V  +  D+  A    L+      + ++  
Sbjct: 294 NGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFV 353

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A+I+ Y K G +++ARK F +++  +V SW S+I+ Y +          F +M L   
Sbjct: 354 SNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL--- 410

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN---KDIVAW 177
                         NG    L  +          R+     +   F+       +D+V  
Sbjct: 411 --------------NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-F 236
           NA++  Y   G +  A ++F ++  ++V +WN +I  YA+NG    A+++  +M + +  
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 237 MPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLD 292
           +PN+ T  SIL +      + + M  H   I+     +    +  TC   V+   G  +D
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDV---FVATCLIDVYGKCGRLVD 573

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
             S    F ++  +  V+W A+I  +  HGH  +  +LF  ML  G KPD +TFV +LS 
Sbjct: 574 AMSL---FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 630

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSH+G VE+G+  F LM + YG KP  +HY C+ D+L RAG ++ A   +  MP  + D 
Sbjct: 631 CSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPL-QPDA 688

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK-K 471
            + GALLGACR+HG++ +  +  +RL E+   + G YVL +N++A  G+W+   +VR   
Sbjct: 689 SIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLA 748

Query: 472 MERRVKKVASFSQIEVKGK 490
            ER +KK   +S IEV  K
Sbjct: 749 RERGLKKTPGWSTIEVNRK 767



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 204/488 (41%), Gaps = 43/488 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  +   FD++ Q D  +  SMI+ ++ N    +A   F  +      I  +      
Sbjct: 165 GDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSE-IRPDFYTFPP 223

Query: 68  YVKA-GRVDEARKV----FDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
            +KA G + + R++    F   ++ NV+   SLI  Y +       R LFD MP   +++
Sbjct: 224 VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMP--FRDM 281

Query: 123 VSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMTKLAREY 165
            SW  ++ G   NG  A+                 + V+S   +C  L   +   L   Y
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 166 FVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
            ++   + D+   NA+I  Y   GN+  A + F  M   +V +WN++I  Y +N     A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 225 MKLLNLMFQSRFMPNETTCT---SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
                 M  + F P+  T     SI+        +   H   +R G+  E  +       
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TK 340
            ++   G    ++SA   FE +  KDV+SW  +I  Y+ +G   +   ++  M +     
Sbjct: 462 -MYAKLGL---LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII 517

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           P++ T+V +L   +H G +++G +    + +           +CL D+  + G++ +AM 
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDV-RMADYIGERLIE-LQPSS-SGAYVLSANVHA 457
           +  ++P  +   V   A++    +HG   +     GE L E ++P   +   +LSA  H+
Sbjct: 577 LFYQVP--QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 458 A---RGEW 462
                G+W
Sbjct: 635 GFVEEGKW 642



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 7/227 (3%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK-LLNLMFQSRFMP 238
           ++  Y + G+++ +   F+ +PQ++V+TWN+MI  Y  NG    A+     L+  S   P
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 239 NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           +  T   +L +C  +++    H  A +LGF+    +       +++  +GF      AR 
Sbjct: 217 DFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLI--HMYSRFGF---TGIARS 271

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+ +  +D+ SW AMI     +G+  Q   +   M   G K + +T V +L  C   G 
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           +       +L    +G +      + L ++  + G +++A +   +M
Sbjct: 332 ISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/528 (28%), Positives = 253/528 (47%), Gaps = 65/528 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDL----------------PKAEALFRAM 51
           G ++ A ++F  M  PD V   S+++   RN +L                P    +   +
Sbjct: 185 GSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSML 244

Query: 52  PESQRNI-----------------VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
            E  R I                  A +A+ID Y + G    A+ VF+ +   NV SW S
Sbjct: 245 AECPRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCS 304

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           ++    +  ++D+  R+F  M  +    N  +++  +  C    L  ++        C+ 
Sbjct: 305 MMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQIH-------CSA 357

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           ++R+ MT             DI   NA+++ Y  +G +++   +   +   ++ +W A I
Sbjct: 358 IKRDLMT-------------DIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAI 404

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAHALAIRLGFE 269
               +NG    A+ LL  M    F PN+   +S L+SC  +    +    H LA++LG +
Sbjct: 405 SANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCD 464

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
            +      CT + +   +     + SARLAF+ ++  DV+SW ++I   + HG       
Sbjct: 465 FKV-----CTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALE 519

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
            F+ M  S  +PD+ TF+ VL  C+HAGLV++G   F  M+  YG  P   HY+C+ D+L
Sbjct: 520 TFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDML 579

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
            R G+  EA+R++  M P E D ++   LL +C+LH ++ +     ++L+EL    S +Y
Sbjct: 580 GRNGRFAEALRMIENM-PFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASY 638

Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
           VL +N++A   EW +  +VR++M E  VKK A +S IEVK + +T +A
Sbjct: 639 VLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKNEVNTFVA 686



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 142/325 (43%), Gaps = 28/325 (8%)

Query: 42  PKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK 101
           P A A+  +      ++V +   +DG +K+GR+ +A  +FD +   NV +WT+ ISG  +
Sbjct: 54  PTAAAVNVSHAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTR 113

Query: 102 ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
             + +    +F  M            +  G A N       + +            +  L
Sbjct: 114 NGRPEAAATMFADM------------LESGVAPNDFACNAALAACAAAGALGLGEQVHSL 161

Query: 162 A-REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           A R  F      D    + +I  Y   G++  A E+F  M   +V  + +++    RNG 
Sbjct: 162 AVRAGFA----ADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGE 217

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC-EGMLENMLAHALAIRLGFEQETSLTYKCT 279
              A+ +L  M +    PNE T TS+L  C  G+ E +  + L + +G +   + T    
Sbjct: 218 LARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGYMLKV-MGSQSVYASTALID 276

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
            +  + D+G      +A+  FE LE+K+VVSW +M+      G      R+F+ M+  G 
Sbjct: 277 FYSRYGDFG------TAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGV 330

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRK 364
           +P+E  F   LS C   G V  GR+
Sbjct: 331 QPNEFAFSIALSAC---GSVCLGRQ 352



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 103/463 (22%), Positives = 186/463 (40%), Gaps = 67/463 (14%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           PD V     +   +++  L  A  LF  MP  ++N+VA +  I G  + GR + A  +F 
Sbjct: 68  PDVVLDCKRLDGLMKSGRLGDALDLFDRMP--RKNVVAWTTAISGCTRNGRPEAAATMFA 125

Query: 83  EIYEGNVY-------------------------------------SW--TSLISGYFKAR 103
           ++ E  V                                      +W  + LI  Y +  
Sbjct: 126 DMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERN--AMTK 160
            +     +F RM  +  +VV +T++V     NG +A+ ++V+   T   GL+ N   MT 
Sbjct: 186 SLRAAEEVFRRM--EAPDVVGYTSLVSALCRNGELARAVDVLCQMTR-QGLQPNEHTMTS 242

Query: 161 LARE-----------YFVQ-MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
           +  E           Y ++ M ++ + A  A+I  Y   G+   A  +F  +  +NV +W
Sbjct: 243 MLAECPRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF 268
            +M+    R+G    A+++ + M      PNE   +  L++C  +      H  AI+   
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDL 362

Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
             +  ++      Y     G    V+       ++E  D+VSWTA I A   +G   +  
Sbjct: 363 MTDIRVSNALLSMY-----GRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 417

Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
            L  +M   G  P++  F   LS C+   L+ +GR+  + ++   G   +    + L ++
Sbjct: 418 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQ-LHCLALKLGCDFKVCTGNALINM 476

Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
             + G++  A      M  H  D +   +L+     HGD  +A
Sbjct: 477 YSKCGRIGSARLAFDVMDTH--DVMSWNSLIHGLAQHGDANLA 517


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 249/531 (46%), Gaps = 56/531 (10%)

Query: 7   TGKVKEATKLFDEMS----QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQRNIVA 60
           TG  +EA  LF EM     +P+ V+  S++     L    L K+   F    +   ++  
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLST 467

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A++  Y K G    A   F+ +   ++ +W SLI+GY +         +F ++ L   
Sbjct: 468 GTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAI 527

Query: 121 NVVSWTTV--VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
           N  + T V  V  CA       L  +   T   GL    + KL  E        D    N
Sbjct: 528 NPDAGTMVGVVPACA------LLNDLDQGTCIHGL----IVKLGFE-------SDCHVKN 570

Query: 179 AMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           A+I  Y   G++  A  LFN     ++  TWN +I  Y +NG    A+   + M    F 
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 238 PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN  T  S+L +        E M  HA  I++GF   T +       Y       QL   
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG---QLXY- 686

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
           S +L F  ++ KD VSW AM+  Y+ HGHG +   LF+ M +S  + D ++FV VLS C 
Sbjct: 687 SEKL-FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 745

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           H GLVE+GRK F+ MS  Y  KP  EHY+C+ D+L RAG   E +  +  MP  E D  V
Sbjct: 746 HXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPV-EPDAGV 804

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            GALLG+CR+H +V++ +   + L++L+P +   +V+ ++++A  G W +  + R KM +
Sbjct: 805 WGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMND 864

Query: 474 RRVKKVASFSQIEVKGKDH--------------------TLLAPMREMGYV 504
             +KK    S +E+K K H                    TLL  M ++GYV
Sbjct: 865 LGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYV 915



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 198/465 (42%), Gaps = 36/465 (7%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAMI 65
           G +K A ++FD+M + D V+  +MI    ++ D  +A   FR+M     + + V+   + 
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTS--LISGYFKARQVDEGRRLFDRMPLKLKNVV 123
            G  K   ++  R +   ++  +  S  S  LI  Y K   VD  RR+FD+M    ++ V
Sbjct: 238 PGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMV--DQDDV 295

Query: 124 SWTTVVLGCAHNGL-----------------IAKLEVIS-WTTMCTGLERNAMTKLAREY 165
           SW T++ G AHNG                  I K+  +S +      ++     ++    
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355

Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
             Q  + DI+    ++  Y   G   +A +LF  +  R++  W+A+I    + G    A+
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHY 282
            L   M   +  PN  T  SIL +C  +    L    H   ++   + + S        Y
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMY 475

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                GF     +A   F R+ ++D+V+W ++I  Y+  G  +    +F ++  S   PD
Sbjct: 476 A--KCGF---FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPD 530

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             T VGV+  C+    +++G     L+ +  GF+      + L D+  + G +  A  + 
Sbjct: 531 AGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 403 SKMPPHERDHVVLGALLGACRLHGDVR--MADYIGERLIELQPSS 445
           +K     +D V    ++ A   +G  +  ++ +   RL    P+S
Sbjct: 590 NK-TDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS 633



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/378 (19%), Positives = 151/378 (39%), Gaps = 32/378 (8%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           +R++   + ++D Y K G +  AR+VFD++ + +V +W ++I+G  ++    E    F  
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRS 220

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M L                   +  +   +S   +  G+ + +  +L R     +  +D 
Sbjct: 221 MQL-------------------VGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF 261

Query: 175 --VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                N +I  Y   G++  A  +F+ M  ++  +W  M+  YA NG     ++L + M 
Sbjct: 262 SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 321

Query: 233 QSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
                 N+ +  S   +    ++       H  A++   + +  +       Y       
Sbjct: 322 LGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG--- 378

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +   A+  F  L+ +D+V+W+A+I A    G+  +   LF  M     KP+ +T + +
Sbjct: 379 --ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L  C+   L++ G+       +A          + L  +  + G    A+   ++M    
Sbjct: 437 LPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS--S 493

Query: 410 RDHVVLGALLGACRLHGD 427
           RD V   +L+      GD
Sbjct: 494 RDIVTWNSLINGYAQIGD 511



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 127/322 (39%), Gaps = 61/322 (18%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           +I+ Y    + D AR VFD     +   W S+I  Y +++Q +E   ++  M  K     
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCT--GLERNAMT--------------KLAREYFV 167
            +T   +  A  G +   E + +       GLER+                 K ARE F 
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
           +MP +D+VAWNAMI     + +  +A + F  M                  G E +++ L
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV---------------GVEPSSVSL 233

Query: 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETS-----LTYKCTCHY 282
           LNL      + N   C SI             H    R  F    S     L  KC    
Sbjct: 234 LNLFPGICKLSNIELCRSI-------------HGYVFRRDFSSAVSNGLIDLYSKCG--- 277

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                    DV+ AR  F+++  +D VSW  M+  Y+++G   +V  LF +M     + +
Sbjct: 278 ---------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 343 EITFVGVLSDCSHAGLVEKGRK 364
           +++ V      +    +EKG++
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKE 350



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 11/202 (5%)

Query: 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +L+SC+ +   +  HA  I  GF+   S+T+    + +F         + AR  F+    
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH------KCDLARSVFDSTPN 91

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
              + W +MI AY+      +   ++  M++ G +PD+ TF  VL  C+ A  +++G   
Sbjct: 92  PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL-GACRL 424
              + R  G +      + L D+  + G +K A  V  KMP  +RD V   A++ G  + 
Sbjct: 152 HGEIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP--KRDVVAWNAMIAGLSQS 208

Query: 425 HGDVRMADYI-GERLIELQPSS 445
                  D+    +L+ ++PSS
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSS 230


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 245/513 (47%), Gaps = 72/513 (14%)

Query: 10  VKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           + EA  +++EM     DPV   +++  +LR  +L  A  +F  M  + R++++ SAM+DG
Sbjct: 147 LHEAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGM--TVRDVISWSAMVDG 204

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSW 125
             K G V EAR+VFD + E NV SWTS+I GY K     +G  LF  M  +    N  + 
Sbjct: 205 LCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTL 264

Query: 126 TTVVLGCA-----------HNGLIA----------------------------------K 140
           +  +  CA           HN +I+                                  +
Sbjct: 265 SVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQ 324

Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
            +++SW ++ TG  ++ M + A   F  M  KD V+W +M+  + + G M ++ ELF  M
Sbjct: 325 KDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM 384

Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENM 257
           P ++   W A+I  +  NG   +A++    M Q    PN    + +L++   +    +  
Sbjct: 385 PVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGR 444

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAKDVVSWT 312
            AHA +I +G+  ++++       Y              RLA     F  +    +++  
Sbjct: 445 QAHAYSINMGWVFDSAVHTSLVSMYA----------KCGRLAEAYHVFSSISNPSLIAIN 494

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
           +MI A+  HG      +LF +M  +G KP+ +TF+G+L+ C+ AG V++G   F  M   
Sbjct: 495 SMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPV 554

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMA 431
           YG +P  EHY+C+ D+L RAG + EA+ +++ MP  + DH     ALL A  LH ++  A
Sbjct: 555 YGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP--QNDHSDAWAALLSASSLHSNLAFA 612

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
               ++L+E  P  + AY + + + ++ G  DE
Sbjct: 613 KIAAQKLLEKDPYDATAYTVLSRMFSSAGMEDE 645



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 193/448 (43%), Gaps = 77/448 (17%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++T + R   L  A+ LF  MP   R++++ +A++  Y   G +  AR VFD++   N 
Sbjct: 43  ALLTSYGRRGRLRDAQLLFDQMP--SRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI----- 144
            SW +L+S Y +A +      LF +MP   KN VS+  ++ G A   ++ + E++     
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMP--AKNAVSYGAIISGLAKAEMLHEAELVYEEMP 158

Query: 145 -SW------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
             W        +  G  R     +A   F  M  +D+++W+AM+      G++++A  +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---ML 254
           + MP+RNV +W +MI  Y + G     + L   M +     N TT +  L +C       
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 255 ENMLAHALAIRLGFEQETSL-------------------TYKCTCHYVFWDWG------F 289
           E +  H L I +GFE +  L                    + C        W        
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYV 338

Query: 290 QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVF----------------- 328
           Q D V  A + F+ +  KD VSWT+M++ ++N G      ++F                 
Sbjct: 339 QHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISS 398

Query: 329 -----------RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
                      R F RM + G KP+ I F  +LS  +   ++ +GR+  +  S   G+  
Sbjct: 399 FITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQA-HAYSINMGWVF 457

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKM 405
            +  ++ L  +  + G++ EA  V S +
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSI 485



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNI 58
            S +   G++ EA  +F  +S P  ++  SMIT F+++  +  A  LF  M  +  + N 
Sbjct: 466 VSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNH 525

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           V    ++ G  +AG V +    F+ +      E N   +T ++    +A  + E   + +
Sbjct: 526 VTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMIN 585

Query: 114 RMP 116
            MP
Sbjct: 586 SMP 588


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 229/450 (50%), Gaps = 38/450 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEA-RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           ++   +A+I  Y K G V+EA ++VFD +    V SW +L+ GY    Q  + R+  D +
Sbjct: 242 DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGY---AQNSDPRKALD-L 297

Query: 116 PLKLKNV---VSWTTV---VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
            L++ +      W T+   +L C+    +   E I    +  GL        A + F+ +
Sbjct: 298 YLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL--------AVDPFIGI 349

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
                    ++++ Y+  G    A  LF+ M  R++ +WN MI  Y++NG    A+ L  
Sbjct: 350 ---------SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 400

Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
            M      P E     +  +C  +    L    H  A++    ++  ++      Y    
Sbjct: 401 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGG 460

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                 +  ++  F+RL  KDV SW  +I  Y  HG G +   LF +ML+ G KPD+ TF
Sbjct: 461 C-----IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTF 515

Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
            G+L  CSHAGLVE G + FN M   +  +P+ EHY+C+ D+L RAG++ +A+R++ +MP
Sbjct: 516 TGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 575

Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
             + D  +  +LL +CR+HG++ + + +  +L+EL+P     YVL +N+ A  G+WD+  
Sbjct: 576 G-DPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVR 634

Query: 467 QVRKKMER-RVKKVASFSQIEVKGKDHTLL 495
           +VR +M+   ++K A  S IEV GK H  L
Sbjct: 635 RVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 664



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 174/427 (40%), Gaps = 58/427 (13%)

Query: 32  ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
           I V  R H++  A   F        + V  + +I  Y   G   ++R VFD++   N++ 
Sbjct: 121 IEVGRRLHEMVSASTQF------CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 174

Query: 92  WTSLISGYFKARQVDEGRRLFDR-------------MPLKLKNVVSWTTVVLGCAHNGLI 138
           W +++S Y +    ++   +F               +P  +K       + LG   +G+ 
Sbjct: 175 WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 234

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA-SELF 197
            K++++S                           D+   NA+I  Y   G + +A   +F
Sbjct: 235 TKMDLVS---------------------------DVFVGNALIAMYGKCGLVEEAVKRVF 267

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257
           +LM  + V +WNA++  YA+N     A+ L   M  S   P+  T  S+L +C  M    
Sbjct: 268 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLH 327

Query: 258 LA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
                H  A+R G   +  +       Y+     F     +A++ F+ +E + +VSW  M
Sbjct: 328 YGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPF-----AAQVLFDGMEHRSLVSWNVM 382

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
           I  YS +G   +   LF +ML  G +P EI  + V   CS    +  G++      +A+ 
Sbjct: 383 IAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH- 441

Query: 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYI 434
                   S + D+  + G +  + R+  ++   E+D      ++    +HG  + A  +
Sbjct: 442 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL--REKDVASWNVIIAGYGIHGRGKEALEL 499

Query: 435 GERLIEL 441
            E+++ L
Sbjct: 500 FEKMLRL 506


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 243/501 (48%), Gaps = 36/501 (7%)

Query: 24  DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
           DP   +S++  ++R      A ++F  MPE  +N+V  SA+I GY   G  + A  + ++
Sbjct: 51  DPFVASSLLHSYIRLGATGAARSVFDRMPE--KNVVGWSALIAGYSARGDAEAAWGLLEQ 108

Query: 84  I----YEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTT 127
           +     E NV +W  L+SG  ++ +  +      RM               L  V     
Sbjct: 109 MRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKE 168

Query: 128 VVLGCAHNGLIAK----LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           V +G   +G + K    L+    T +     +          F +  + D+ + NA++  
Sbjct: 169 VSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAG 228

Query: 184 YVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
                 +++A  LF     R    NV +W +++    +NG +  A+ L   M      PN
Sbjct: 229 LSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPN 288

Query: 240 ETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T   +L    +   ++    AH  ++R GF  +  +       Y             A
Sbjct: 289 SVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCG-----KARHA 343

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ + +++VVSW AMI  Y+ HG      +LF  M K   KPD +TF  VL  CS A
Sbjct: 344 RTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQA 403

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
           GL E+GR+ FN M + +G  PR EHY+C+  +L R+G++ EA  ++++M P E D  + G
Sbjct: 404 GLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEM-PFEPDSCIWG 462

Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
           +LLG+CR++G+V +A+   E+L +L+P ++G YVL +N++A++  WD   +VR +M+   
Sbjct: 463 SLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMG 522

Query: 476 VKKVASFSQIEVKGKDHTLLA 496
           +KK    S IE+K K H LLA
Sbjct: 523 LKKEKGCSWIEIKNKVHMLLA 543



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 44/252 (17%)

Query: 1   TSQFGC---TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDL--PKAEALFRAM 51
           TS   C    G+  EA  LF  M     +P+ V+   ++  F     L   ++   F   
Sbjct: 258 TSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLR 317

Query: 52  PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
                ++   SA++D Y K G+   AR +FD +   NV SW ++I GY          +L
Sbjct: 318 KGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQL 377

Query: 112 FDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168
           F  M  K K   ++V++T V+  C+  GL                     T+  R YF +
Sbjct: 378 FCSMQ-KCKQKPDLVTFTCVLGACSQAGL---------------------TEEGRRYFNE 415

Query: 169 MPNKDIVA-----WNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMIDRYARNG--- 219
           M     ++     +  M+T    +G + +A +L N MP + +   W +++      G   
Sbjct: 416 MQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVL 475

Query: 220 -PEGAAMKLLNL 230
             E AA KL  L
Sbjct: 476 LAEVAAEKLFQL 487



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
           L + +    F P+     S L SC         HA A+  G  ++  +       Y+   
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLG 66

Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
                   +AR  F+R+  K+VV W+A+I  YS  G     + L  +M  +G +P+ IT+
Sbjct: 67  -----ATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITW 121

Query: 347 VGVLSDCSHAGLVEKGRK----TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
            G++S     GL   GR     T  +   + GF P A   SC    L   G VKE
Sbjct: 122 NGLVS-----GLNRSGRALDAVTALVRMHSEGFFPDATGVSC---ALSAVGDVKE 168


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 236/438 (53%), Gaps = 25/438 (5%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +++  +A++  Y K   + +ARK+FD++ E +   W  +I+ Y +  +  E   LF  M 
Sbjct: 145 DLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMA 204

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNKDIV 175
                   +T + +  +    IA+L+ + W       + RN              +  + 
Sbjct: 205 RSGIRSDLFTALPVISS----IAQLKCVDWGKQTHAHILRNG------------SDSQVS 248

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N++I  Y +   +  A ++FN M  ++V +W+AMI  Y +NG    A+ L + M    
Sbjct: 249 VHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDG 308

Query: 236 FMPNETTCTSILTSCE--GMLENM-LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +     +IL +    G LEN+   H  +++LG    TSL    T   + +     ++
Sbjct: 309 IQADFVIMINILPAFVHIGALENVKYLHGYSMKLGL---TSLPSLNTALLITYAKCGSIE 365

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +       E+++ KD++ W +MI A++NHG   Q F+L+ RM  S +KPD++TF+G+L+ 
Sbjct: 366 MAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTA 425

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C ++GLVEKG++ F  M+ +YG +P  EHY+C+ ++L RAG + EA  +V  MP  + D 
Sbjct: 426 CVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPI-KPDA 484

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V G LL AC++H   ++A++  E+LI ++P ++G Y+L +N++AA G+WD  A++R  +
Sbjct: 485 RVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFL 544

Query: 473 ERR-VKKVASFSQIEVKG 489
             + +KK+   S +E+ G
Sbjct: 545 RNKGLKKIPGCSWLEING 562



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 60/287 (20%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------------------ 53
           +A KLFD+M + D V    MI  + R     +   LF++M                    
Sbjct: 164 DARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIA 223

Query: 54  -------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                              S   +   +++ID Y +   +D A K+F+ + + +V SW++
Sbjct: 224 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 283

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           +I GY K  Q      LF +M       + V    ++    H G +  ++ +   +M  G
Sbjct: 284 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 343

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF--NLMPQRNVWTWNA 210
           L               +P+ +     A++  Y   G++  A  LF    +  +++  WN+
Sbjct: 344 L-------------TSLPSLN----TALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNS 386

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           MI  +A +G      KL N M  S   P++ T   +LT+C   G++E
Sbjct: 387 MISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 433


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/482 (29%), Positives = 241/482 (50%), Gaps = 43/482 (8%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAM 64
           +G V    ++FDEM + D +S  SMI+ ++ N  L  +  L  +M     + ++V  + +
Sbjct: 172 SGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTV 231

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKN 121
           +D Y + G  DEA ++F++I E N+ S T+L+SGY +    ++   +F  M    +   +
Sbjct: 232 MDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPD 291

Query: 122 VVSWTTVVLGCAHNG-LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           + S ++V++ C H G L+   E+  +     G+     +   +            A  A+
Sbjct: 292 LDSLSSVLVSCRHLGALVCGQEIHGY-----GIRSVDSSSFYKS-----------AGAAL 335

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +T YV    +  A  +F LM + +V TWNAMI  +        A++  + M +S  M N+
Sbjct: 336 LTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQ 395

Query: 241 TTCTSILTSCEGMLENMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQLDV 293
            T +++L +C+ +      HA   +  F            +  KC C            +
Sbjct: 396 ITISTVLPACD-LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGC------------I 442

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +A   F  + ++D+VSW  MI  +  HG G    +L   M  S   P+ +TF   LS C
Sbjct: 443 GTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSAC 502

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           SH+GLV++G + F+ M+R +GF P  EH+SC+ D+L RA ++++A+  + KMP     H 
Sbjct: 503 SHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKH- 561

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473
           +  ALL ACR   +V +A    E+L +L+P  +G YV  +N++A  G WD+   VRK ME
Sbjct: 562 IWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLME 621

Query: 474 RR 475
            R
Sbjct: 622 DR 623



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 72/365 (19%)

Query: 16  LFDEMSQPDPVSCASMITVFLRNHDL---PKAEALFRAMPESQRNIVAE--------SAM 64
           LF       P S  ++++ F  NH L     ++AL +     Q  I+          + +
Sbjct: 5   LFKRAISSLPTSNPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKL 64

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           +  Y   G +  A+ +FD++ + NV++WT+++  Y +    DE  R +  M LK  L + 
Sbjct: 65  VQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDK 124

Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
             +  V   C   G +  LEV        G++      + ++  +     D+   N++I 
Sbjct: 125 YVFPKVFRAC---GQLLWLEV--------GIQ------VHKDVVICGCEFDLQVCNSLID 167

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y  +G++     +F+ M +R+V +WN+MI  Y  NG    +++LL  M    F P+  T
Sbjct: 168 MYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVT 227

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
             +++ +               R+G   E             W+             FE+
Sbjct: 228 WNTVMDA-------------YCRMGLCDEA------------WE------------IFEQ 250

Query: 303 LEAKDVVSWTAMILAYS---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
           ++  +++S T ++  YS   NH     +FR    M +    PD  +   VL  C H G +
Sbjct: 251 IKEPNIISLTTLVSGYSRIGNHEKSLGIFR--EMMSRRVAFPDLDSLSSVLVSCRHLGAL 308

Query: 360 EKGRK 364
             G++
Sbjct: 309 VCGQE 313



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 21/291 (7%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y D G++  A  LF+ + Q NV+ W A++  Y+RNG     ++  + M     +P+
Sbjct: 64  LVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPD 123

Query: 240 ETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           +     +  +C  +L     +  H   +  G E +  +     C+ +   +    DV S 
Sbjct: 124 KYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQV-----CNSLIDMYSKSGDVGSG 178

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  +DV+SW +MI  Y  +G       L A M   G +PD +T+  V+      
Sbjct: 179 RRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRM 238

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE---RDHV 413
           GL ++  + F  +      +P     + L     R G  ++++ +  +M        D  
Sbjct: 239 GLCDEAWEIFEQIK-----EPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLD 293

Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSS-----GAYVLSANVHAAR 459
            L ++L +CR  G +     I    I    SSS     GA +L+  V   R
Sbjct: 294 SLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKR 344


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 243/497 (48%), Gaps = 36/497 (7%)

Query: 12  EATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAMI 65
           EA KLF EM+    +PD  +C S++T       L +   +  +      + N   ++ +I
Sbjct: 222 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLI 281

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVV 123
           D Y K+  + +A+KVFD + E NV S+ ++I GY    ++ E   LF  M ++L   +++
Sbjct: 282 DMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL 341

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
           ++ +++      G+ A L  +  +    GL       L           D+ A +A+I  
Sbjct: 342 TFVSLL------GVSASLFALELSKQIHGLIIKXGVSL-----------DLFAGSALIDV 384

Query: 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243
           Y     +  A  +F  M ++++  WNAM   Y ++     A+KL + +  SR  PNE T 
Sbjct: 385 YSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTF 444

Query: 244 TSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
            +++T+   +         H   +++G +    +T      Y          +  AR  F
Sbjct: 445 AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCG-----SIEEARKMF 499

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
                +DVV W +MI  ++ HG   +   +F  M+K G +P+ +TFV VLS CSHAG VE
Sbjct: 500 NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVE 559

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            G   FN M   +G KP  EHY+C+  +L R+G++ EA   + KMP  E   +V  +LL 
Sbjct: 560 DGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPI-EPAAIVWRSLLS 617

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKV 479
           ACR+ G+V +  Y  E  I   P  SG+Y+L +N+ A++G W +  +VR +M+   V K 
Sbjct: 618 ACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKE 677

Query: 480 ASFSQIEVKGKDHTLLA 496
              S IEV  K +  +A
Sbjct: 678 PGRSWIEVNNKVNVFIA 694



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 207/477 (43%), Gaps = 57/477 (11%)

Query: 8   GKVKEATKLFDEMSQ----PDPVSCASMITV-----FLRNHDLPKAEALFRAMPESQRNI 58
           G+   + +LF +M +    PD    +S+++      FL       A  L R    ++ ++
Sbjct: 117 GRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRG---TEMDV 173

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
              + +ID Y K  RV   RK+FD++   N+ SWT++ISGY +     E  +LF  M   
Sbjct: 174 SVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEM--- 230

Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ--MPNKDIVA 176
             N + W      C            S  T C  LE     +    Y ++  + + + V 
Sbjct: 231 --NRLGWKPDGFACT-----------SVLTSCGSLEALEQGRQVHAYTIKANLESNEFVK 277

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            N +I  Y  +  +  A ++F++M ++NV ++NAMI+ Y+       A++L + M    F
Sbjct: 278 -NGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLF 336

Query: 237 MPNETTCTSILTSCEGMLENMLA---HALAIRLG-----FEQETSLTYKCTCHYVFWDWG 288
            P+  T  S+L     +    L+   H L I+ G     F     +     C Y      
Sbjct: 337 PPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSY------ 390

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V  AR  FE +  KD+V W AM   Y+ H    +  +L++ +  S  KP+E TF  
Sbjct: 391 ----VKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAA 446

Query: 349 VLSDCSHAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           +++  S+   +  G++  N L+     F P   +   L D+  + G ++EA ++ +    
Sbjct: 447 LITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFN--SS 502

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPS-SSGAYVLSANVHAARGE 461
             RD V   +++     HG+   A  +   +++  +QP+  +   VLSA  HA   E
Sbjct: 503 IWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVE 559



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 28/368 (7%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++   +++ID Y K G ++ AR VFD++ E    +WT++I+GY K  +      LF +M
Sbjct: 70  QDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DI 174
             +  NVV    V              V S  + C+ LE     K    Y ++   + D+
Sbjct: 130 --RETNVVPDRYV--------------VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 173

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N +I  Y     +    +LF+ M  +N+ +W  MI  Y +N  +  AMKL   M + 
Sbjct: 174 SVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRL 233

Query: 235 RFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            + P+   CTS+LTSC   E + +    HA  I+   E    +       Y   +     
Sbjct: 234 GWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNL---- 289

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            +  A+  F+ +  ++V+S+ AMI  YS+     +   LF  M      P  +TFV +L 
Sbjct: 290 -LXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLG 348

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
             +    +E  ++   L+ +  G        S L D+  +   VK+A  V  +M  +E+D
Sbjct: 349 VSASLFALELSKQIHGLIIKX-GVSLDLFAGSALIDVYSKCSYVKDARHVFEEM--NEKD 405

Query: 412 HVVLGALL 419
            VV  A+ 
Sbjct: 406 IVVWNAMF 413



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 115/244 (47%), Gaps = 21/244 (8%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           ++D+    ++I  Y   GB+  A  +F+ + ++   TW  +I  Y + G    +++L   
Sbjct: 69  DQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQ 128

Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLA----HALAIRLGFEQETSLTYKCTCHYVFWD 286
           M ++  +P+    +S+L++C  MLE +      HA  +R G E + S+        V  D
Sbjct: 129 MRETNVVPDRYVVSSVLSAC-SMLEFLEGGKQIHAYVLRRGTEMDVSVVN------VLID 181

Query: 287 WGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
           +  + + V + R  F+++  K+++SWT MI  Y  +   ++  +LF  M + G KPD   
Sbjct: 182 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFA 241

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKEAMRV 401
              VL+ C     +E+GR+       AY  K   E      + L D+  ++  + +A +V
Sbjct: 242 CTSVLTSCGSLEALEQGRQV-----HAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKV 296

Query: 402 VSKM 405
              M
Sbjct: 297 FDVM 300


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 222/437 (50%), Gaps = 39/437 (8%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   + ++  Y+  G V+   +VF++I + NV +W SLISG+    +  +    F  M 
Sbjct: 141 NMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREM- 199

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
                             NG+ A   ++    +  G       +    YF      +++ 
Sbjct: 200 ----------------QSNGVKANETIMVDLLVACG-------RCFDPYFQSKVGFNVIL 236

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
             ++I  Y   G++  A  LF+ MP+R + +WN++I  Y++NG    A+ +   M     
Sbjct: 237 ATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI 296

Query: 237 MPNETTCTSILTS-----CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            P++ T  S++ +     C  + +++  HA   + GF ++ ++   C    ++   G   
Sbjct: 297 APDKVTFLSVIRASMIQGCSQLGQSI--HAYVSKTGFVKDAAIV--CALVNMYAKTG--- 349

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVL 350
           D  SA+ AFE LE KD ++WT +I+  ++HGHG +   +F RM + G   PD IT++GVL
Sbjct: 350 DAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVL 409

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
             CSH GLVE+G++ F  M   +G +P  EHY C+ DIL RAG+ +EA R+V  MP    
Sbjct: 410 YACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPN 469

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
            + + GALL  C +H ++ + D I   + E +   SG YVL +N++A  G W +   +R+
Sbjct: 470 VN-IWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRE 528

Query: 471 KME-RRVKKVASFSQIE 486
            M+ +RV KV   S +E
Sbjct: 529 SMKSKRVDKVLGHSSVE 545



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 20/246 (8%)

Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
           N++ A  +F  +   +V+ WN+MI  Y+ +     A+     M +  + P+  T   +L 
Sbjct: 56  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 115

Query: 249 SCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +C G+ +       H   ++ GFE    ++  C  H ++   G   +VN     FE +  
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVS-TCLLH-MYMCCG---EVNYGLRVFEDIPQ 170

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
            +VV+W ++I  + N+         F  M  +G K +E   V +L  C        GR  
Sbjct: 171 WNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVAC--------GRCF 222

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
                   GF       + L D+  + G ++ A  +   MP  ER  V   +++     +
Sbjct: 223 DPYFQSKVGFNVILA--TSLIDMYAKCGDLRTARYLFDGMP--ERTLVSWNSIITGYSQN 278

Query: 426 GDVRMA 431
           GD   A
Sbjct: 279 GDAEEA 284



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
           ++++ AR  FE ++   V  W +MI  YSN  +  +    +  ML+ G  PD  TF  VL
Sbjct: 55  MNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVL 114

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             CS    ++ G      + +  GF+      +CL  +    G+V   +RV   +P
Sbjct: 115 KACSGLRDIQFGSCVHGFVVKT-GFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIP 169



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 98/244 (40%), Gaps = 64/244 (26%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--- 86
           S+I ++ +  DL  A  LF  MPE  R +V+ +++I GY + G  +EA  +F ++ +   
Sbjct: 239 SLIDMYAKCGDLRTARYLFDGMPE--RTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI 296

Query: 87  -----------------------GNVYSWTS-------------LISGYFKARQVDEGRR 110
                                   +++++ S             L++ Y K    +  ++
Sbjct: 297 APDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKK 356

Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGL---------------IAKLEVISWTTMCTGLER 155
            F+   L+ K+ ++WT V++G A +G                 A  + I++  +      
Sbjct: 357 AFE--DLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSH 414

Query: 156 NAMTKLAREYFVQMPN-----KDIVAWNAMITAYVDAGNMAQASELFNLMPQR-NVWTWN 209
             + +  + YF +M +       +  +  M+     AG   +A  L   MP + NV  W 
Sbjct: 415 IGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWG 474

Query: 210 AMID 213
           A+++
Sbjct: 475 ALLN 478


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 210/415 (50%), Gaps = 33/415 (7%)

Query: 77  ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
           A KVF E+ E NV  WTS+I+GY   + +   RR FD  P +  ++V W T+V G    G
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPER--DIVLWNTMVAGYIEMG 101

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                              N M   AR  F QMP +D+++WN ++  Y + G+M     +
Sbjct: 102 -------------------NMME--ARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERV 140

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCE--GM 253
           F+ M +RNV++WN +I  YA+NG     +     M  +    PN+ T T +L++C   G 
Sbjct: 141 FDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGA 200

Query: 254 LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
            +     H     LG+ +   +  K     ++   G    +  A   F+ ++ +D++SW 
Sbjct: 201 FDFGKRVHKYGENLGYNK-VDVNVKNALIDMYGKCG---AIEIAMEVFKGIKRRDLISWN 256

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            MI   + HGHG +   LF  M   G  PD++TFVGVL  C H GLVE G   FN M   
Sbjct: 257 TMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTD 316

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           +   P+ EH  C+ D+L RAG + +A+  ++KMP  + D V+   LLGA +++  V   +
Sbjct: 317 FSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPV-KADAVIWATLLGASKVYKKVDTGE 375

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
              + LI+L+P +   +V+ +N++   G +D+ A+++  M +   KK A  S IE
Sbjct: 376 LALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGISWIE 430



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 145/300 (48%), Gaps = 29/300 (9%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG    +  A K+F EM + + V   SMI  +L N DL  A   F   PE  R+IV  + 
Sbjct: 35  FGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPE--RDIVLWNT 92

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           M+ GY++ G + EAR +FD++   +V SW +++ GY     ++   R+FD M    +NV 
Sbjct: 93  MVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEML--ERNVF 150

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCT-----------GLERNAMTKLAREYFVQMPNK 172
           SW  ++ G A NG ++++ + S+  M              L  +A  KL    F +  +K
Sbjct: 151 SWNGLIKGYAQNGRVSEV-LGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHK 209

Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
                     D+   NA+I  Y   G +  A E+F  + +R++ +WN MI+  A +G   
Sbjct: 210 YGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGT 269

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTC 280
            A+ L + M      P++ T   +L +C+  G++E+ LA+  ++   F     + + C C
Sbjct: 270 EALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEH-CGC 328


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 215/451 (47%), Gaps = 62/451 (13%)

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLK 120
           +D A++VFD+I   N+Y+W +LI  Y  +    +   +F RM             P  +K
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
                  +  G A +G++ K+                           +   D+   N++
Sbjct: 145 AASELEELFTGKAFHGMVIKV---------------------------LLGSDVFILNSL 177

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           I  Y   G +     +F   P+R+V +WN+MI  + + G    A++L   M      PN 
Sbjct: 178 IHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 241 TTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
            T   +L++C    +       H+   R    +  SLT       ++   G    V  A+
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIXE--SLTLSNAMLDMYTKCG---SVEDAK 292

Query: 298 LAFERLEAKDVVSWTAMILAYSN------------HGHGFQVFRLFARMLKSGTKPDEIT 345
             F+++  KD+VSWT M++ Y+             HGHG     LF++M +   KP+ +T
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVT 352

Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           F  +L  CSH GLVE+GR  FN M   YG  P  +HY+C+ DIL RAG ++EA+ ++ KM
Sbjct: 353 FTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 412

Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
            P      V GALLGAC +H +V +A+    +LIEL+P + GAYVL +N++A  G+WD  
Sbjct: 413 -PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 471

Query: 466 AQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           + +RK M +  +KK    S IEV G  H  L
Sbjct: 472 SGLRKLMRDVGLKKEPGCSSIEVDGIVHEFL 502



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 53/299 (17%)

Query: 3   QFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI 58
           Q GC    +EA +LF EM     +P+ ++   +++   +  D      +   +   +RN 
Sbjct: 214 QGGCP---EEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI---ERNR 267

Query: 59  VAES-----AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGR---- 109
           + ES     AM+D Y K G V++A+++FD++ E ++ SWT+++ GY K  + D  +    
Sbjct: 268 IXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAM 327

Query: 110 --------RLFDRMPL-KLK-NVVSWTTVVLGCAHNGLIA-------KLEVI-------- 144
                    LF +M   K+K N V++T ++  C+H GL+        ++E++        
Sbjct: 328 HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVK 387

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-WNAMITAYVDAGNMAQA----SELFNL 199
            +  M   L R  + + A E   +MP     + W A++ A     N+  A    S+L  L
Sbjct: 388 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL 447

Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
            P  N   +  + + YA+ G       L  LM +   +  E  C+SI    +G++   L
Sbjct: 448 EPG-NHGAYVLLSNIYAKAGKWDRVSGLRKLM-RDVGLKKEPGCSSI--EVDGIVHEFL 502



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 33/210 (15%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +++I  Y K G +    +VF      +V SW S+I+ + +    +E   LF  M  +   
Sbjct: 175 NSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVK 234

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
            N ++   V+  CA     +  E   W    + +ERN +             + +   NA
Sbjct: 235 PNGITMVGVLSACAKK---SDFEFGRWVH--SYIERNRIX------------ESLTLSNA 277

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA------------AMKL 227
           M+  Y   G++  A  LF+ MP++++ +W  M+  YA+ G   A            A+ L
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIAL 337

Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLE 255
            + M + +  PN  T T+IL +C   G++E
Sbjct: 338 FSKMQEDKVKPNAVTFTNILCACSHVGLVE 367


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 254/533 (47%), Gaps = 51/533 (9%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR----- 56
           S +   G+ + A  +FD M   D VS  +MI+ FLRN D   +   F+ M ES R     
Sbjct: 85  SMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRF 144

Query: 57  NIVAESAMIDGY--VKAGRVDEARK-----VFDEIYEGNVYSWTSLISGYFKARQVDEGR 109
           +    + M+ G   ++ G      +     VF   +E  +    +LI+ YFK     +GR
Sbjct: 145 DKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGR 204

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNG-------LIAK-----------LEVISWTTMCT 151
           ++FD M  +  NVV+WT V+ G A N        L A+           L  +S    C+
Sbjct: 205 KVFDEMIER--NVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACS 262

Query: 152 GLE--RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           GL+  R+        + + M   D+   +A++  Y   G++  A ++F    + +  +  
Sbjct: 263 GLQVLRDGQKIHGLLWKLGM-QSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLT 321

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269
            ++  +A+NG E  A+++   M       +    +++L         +      + LG +
Sbjct: 322 VILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVL--------GVFGVGTYLALGKQ 373

Query: 270 QETSLTYKCTCHYVFWDWGFQL------DVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
             + +  K  C   F   G         D++ + L F ++  K+ VSW ++I A++ HG 
Sbjct: 374 IHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGD 433

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           GF+  + +  M   G  P ++TF+ +L  CSHAGLVEKG +    M+  +G  PR+EHY+
Sbjct: 434 GFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYA 493

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           C+ D+L RAG + EA + +  +P H    +V  ALLGAC +HGD  M  Y  +RL    P
Sbjct: 494 CVVDMLGRAGHLNEAKKFIEGLPEH-GGVLVWQALLGACSIHGDSEMGKYAADRLFSAAP 552

Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           +S   YVL AN++++ G W E A   K+M E  V K    S IE++ K ++ +
Sbjct: 553 ASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFV 605



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 47/334 (14%)

Query: 137 LIAKLEVISWTTMCTGLERNAM--TKLAREYFVQMPNKD--------IVAWNAMITAYVD 186
           L+   ++ S  T+C G +RN    + +      Q P+ D        +  WN++++ Y  
Sbjct: 31  LLNHADLTSLLTLC-GRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSK 89

Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-----RFMPNET 241
            G    A  +F+ MP R+  +WN MI  + RNG    + K    M +S     RF  ++ 
Sbjct: 90  CGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRF--DKA 147

Query: 242 TCTSILTSCEGMLENM------LAHALAIRLGFEQETSLT-------YKCTCHYVFWDWG 288
           T T++L+ C+G+   +      + H L    GFE+E ++        +KC C        
Sbjct: 148 TLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCEC-------- 199

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFV 347
                +  R  F+ +  ++VV+WTA+I   + +       RLFA+M   G+  P+ +T++
Sbjct: 200 ----FSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYL 255

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
             L  CS   ++  G+K   L+ +  G +      S L D+  + G +  A ++      
Sbjct: 256 SSLMACSGLQVLRDGQKIHGLLWK-LGMQSDLCIESALMDLYSKCGSLDAAWQIFES--A 312

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
            E D V L  +L A   +G    A  I  +++ L
Sbjct: 313 EELDGVSLTVILVAFAQNGFEEEAIQIFTKMVAL 346



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 183/426 (42%), Gaps = 50/426 (11%)

Query: 42  PKAEALFRAMPESQRNIVAESAMI-----DGYVKAGRVDEARKV-------FDEIYEGNV 89
           P ++ LF +  +S  N    ++++     D  +  G    AR +       FD      +
Sbjct: 18  PHSQYLFPSTTKSLLNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNAL 77

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG------------- 136
           + W SL+S Y K  +      +FD MP  +++ VSW T++ G   NG             
Sbjct: 78  FIWNSLLSMYSKCGEFRNAGNVFDYMP--VRDTVSWNTMISGFLRNGDFDTSFKFFKQMT 135

Query: 137 ----LIAKLEVISWTTM---CTGLERNAMTKLAREY----FVQMPNKDIVAWNAMITAYV 185
               +  + +  + TTM   C GL     T + +      FV    ++I   NA+IT+Y 
Sbjct: 136 ESNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYF 195

Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCT 244
                +Q  ++F+ M +RNV TW A+I   A+N     +++L   M       PN  T  
Sbjct: 196 KCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYL 255

Query: 245 SILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           S L +C G+    +    H L  +LG + +  L  +     ++   G    +++A   FE
Sbjct: 256 SSLMACSGLQVLRDGQKIHGLLWKLGMQSD--LCIESALMDLYSKCG---SLDAAWQIFE 310

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
             E  D VS T +++A++ +G   +  ++F +M+  G + D      VL        +  
Sbjct: 311 SAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLAL 370

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
           G++  +L+ +   F       + L ++  + G + +++ V  +M   +++ V   +++ A
Sbjct: 371 GKQIHSLIIKK-NFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMT--QKNSVSWNSVIAA 427

Query: 422 CRLHGD 427
              HGD
Sbjct: 428 FARHGD 433


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 247/478 (51%), Gaps = 66/478 (13%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----P 116
           +A+ID Y K G +++A KVF+ +   +V SW ++++GY ++        LF+ M     P
Sbjct: 298 NALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIP 357

Query: 117 LKLKNVVSWTTVVLG-----CAHNGLIA------------KLEVISWTTMCT-------G 152
           L   +V++W+ V+ G     C+   L A             + +IS  + C        G
Sbjct: 358 L---DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 153 LE------RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP--QRN 204
           +E      +  +  L  ++      +D++ +NA+I  Y    +   A  +F+ +P  +RN
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERN 474

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM--PNETTCTSILTSCEGMLENMLAHAL 262
           V TW  MI  YA+ G    A+K+ + M    +   PN  T + IL +C        AH  
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMAC--------AHLA 526

Query: 263 AIRLG----------FEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSW 311
           A+R+G           E E S+ +   C   ++   G   DV++AR  F+ +  ++ VSW
Sbjct: 527 ALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG---DVDTARNVFDSMPKRNEVSW 583

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           T+M+  Y  HG G +   +F +M K+G  PD+I+F+ +L  CSH+G+V++G   F++M R
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
            Y     AEHY+C+ D+L R G++ +A + + +M P E   V+  ALL ACR+H +V +A
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM-PMEPSAVIWVALLSACRVHSNVELA 702

Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVK 488
           +Y   +L+ ++  + G+Y L +N++A    W + A++R+ M++  +KK    S ++ K
Sbjct: 703 EYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGK 760



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 174/426 (40%), Gaps = 66/426 (15%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRL 111
           + N+   +A++  Y + G +++A  VFDEI      +V SW S+++ + K         L
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
           F  M +          +V   A N     + +++    C  L+     K    Y ++   
Sbjct: 241 FSEMSM----------IVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGT 290

Query: 172 -KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             D    NA+I  Y   G+M  A ++FN+M  ++V +WNAM+  Y ++G  GAA +L   
Sbjct: 291 FADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFEN 350

Query: 231 M-------------------------------FQSRFM----PNETTCTSILTSCE---G 252
           M                               FQ   +    PN  T  S+L++C     
Sbjct: 351 MRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGA 410

Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS-------ARLAFERL-- 303
           + + M  HA +++       +             +   +D+ S       AR  F+ +  
Sbjct: 411 LSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPR 470

Query: 304 EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEK 361
             ++VV+WT MI  Y+ +G      ++F+ M+       P+  T   +L  C+H   +  
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRM 530

Query: 362 GRKTFNLMSRAYGFKPRAEHYS-CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           G++    ++R + ++P     + CL D+  + G V  A  V   MP  +R+ V   +++ 
Sbjct: 531 GKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP--KRNEVSWTSMMS 588

Query: 421 ACRLHG 426
              +HG
Sbjct: 589 GYGMHG 594



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 139/340 (40%), Gaps = 79/340 (23%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMI 65
           G + +A K+F+ M   D VS  +M+T + ++ +   A  LF  M +     +++  SA+I
Sbjct: 308 GSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVI 367

Query: 66  DGYVKAGRVDEARKVFDEIY----------------------------EGNVYS------ 91
            GY + G   EA   F ++                             E + YS      
Sbjct: 368 AGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLL 427

Query: 92  -----------------WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134
                            + +LI  Y K R     R +FD +P + +NVV+WT ++ G A 
Sbjct: 428 SLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQ 487

Query: 135 NG-----------LIAK-------LEVISWTTM-CTGLERNAMTKLAREYFVQM----PN 171
            G           +I+K          IS   M C  L    M K    Y  +     P+
Sbjct: 488 YGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPS 547

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
              VA N +I  Y   G++  A  +F+ MP+RN  +W +M+  Y  +G    A+ + + M
Sbjct: 548 VYFVA-NCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606

Query: 232 FQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFE 269
            ++ F+P++ +   +L +C   GM++  L +   +R  ++
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYD 646



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 26/243 (10%)

Query: 179 AMITAYVDAGNMAQA-SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            ++ +Y+  G    A S L  + P   VW WN ++  + + G    A+ +   M ++   
Sbjct: 88  GVVASYLACGATKDALSVLERVTPSPAVW-WNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 238 PNETTCTSILTSCEGMLENMLA----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
           P+  T    L +C G L +       H L    GFE    +     C+ +   +     +
Sbjct: 147 PDHFTLPYALKAC-GELPSYCCGRALHGLICCNGFESNVFV-----CNALVAMYSRCGSL 200

Query: 294 NSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARML------KSGTKPDEI 344
             A L F+ +  K   DV+SW +++ A+    +      LF+ M        +  + D I
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVV 402
           + V +L  C+    + + ++  +   R   F   A+ + C  L D   + G + +A++V 
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTF---ADAFVCNALIDTYAKCGSMNDAVKVF 317

Query: 403 SKM 405
           + M
Sbjct: 318 NVM 320



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%)

Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
            ER+     V W  ++  +   GH  +   +  RML++GTKPD  T    L  C      
Sbjct: 106 LERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSY 165

Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
             GR    L+    GF+      + L  +  R G +++A  V  ++     D V+
Sbjct: 166 CCGRALHGLIC-CNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVI 219


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 231/449 (51%), Gaps = 33/449 (7%)

Query: 85  YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           YE +V+   SL++ Y +    D  R++F+RMP +  NVVSW+++V   AHNG   +  ++
Sbjct: 131 YESDVFVANSLMAMYGRFGCFDFSRQVFERMPER--NVVSWSSMVGAYAHNGRYEEGLLL 188

Query: 145 SWTTMCTGLERN------AMTKLAREY----FVQMP-----NKDIVAWNAMITAYVDAGN 189
            W  +  G+  N      AM  + RE+    F ++      + D    NA +  Y   G 
Sbjct: 189 FWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGR 248

Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           +  A   F  +  +++  W +MI+ Y +      A++L   M     +P+  T  S++ +
Sbjct: 249 IDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHA 308

Query: 250 CEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
              +    LA   H +  R  F+   +L       YV        ++  AR  F+R+ A+
Sbjct: 309 VSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCG-----NLEYARKCFDRMSAR 363

Query: 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366
           +++SW+ MI  Y  HGHG +   LF +M K+  KPD I FV VLS CSH GL+ +G + F
Sbjct: 364 NLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECF 422

Query: 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             M+R +G  PR EHY+C+ D+L RAG++ EA   + +MP    D  V GALLGACR+H 
Sbjct: 423 KAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPI-TPDAGVWGALLGACRIHS 481

Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
           ++  A+     L  L   + G Y+L +N++A+ G+  E   +R  M+ R V+K    + I
Sbjct: 482 NLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTII 541

Query: 486 EVKGKDHTLLA-----PMREMGYVVLKEV 509
           E+K K +T +A     P  ++ Y  L+++
Sbjct: 542 EIKNKVYTFVAGDTSNPQTDLIYSELRKL 570



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 25/253 (9%)

Query: 4   FGCTGKVKEATKLF----DEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           +   G+ +E   LF    +E   P+  S  + +    R H+   A+   R + ++    +
Sbjct: 176 YAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHE---ADDFCRVVIDNGLDSD 232

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
              ++A +  Y + GR+D AR+ F  I + ++ +WTS+I  Y +A        LF +M  
Sbjct: 233 QSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQM-- 290

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
           KL  +V  +  +L   H   ++ L          G+       + R +F       I   
Sbjct: 291 KLLGIVPDSVTLLSLIH--AVSNLASFQLARFVHGV-------ITRSFF----KNHIALD 337

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A+I  YV  GN+  A + F+ M  RN+ +W+ MI  Y  +G    A+ L + M ++   
Sbjct: 338 TAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KASIK 396

Query: 238 PNETTCTSILTSC 250
           P+      +L++C
Sbjct: 397 PDHIAFVMVLSAC 409



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           ++I  Y   G+++ A  LF+     NV+ WN +I  ++       +++L + M Q     
Sbjct: 39  SLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQA 98

Query: 239 NETTCTSILTSCEGMLENML---AHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDVN 294
              T   +L +C  + +  L   AHA  +  G+E +  +       Y  F  + F     
Sbjct: 99  TNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDF----- 153

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            +R  FER+  ++VVSW++M+ AY+++G   +   LF RML  G  P+  + V  ++ C 
Sbjct: 154 -SRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMA-CI 211

Query: 355 H 355
           H
Sbjct: 212 H 212



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 28/247 (11%)

Query: 12  EATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
            A +LF +M      PD V+  S+I           A  +   +  S  + +I  ++A+I
Sbjct: 282 NALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVI 341

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVS 124
           D YVK G ++ ARK FD +   N+ SW+++ISGY       E   LFD+M   +K + ++
Sbjct: 342 DLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIA 401

Query: 125 WTTVVLGCAHNGLIAK---------------LEVISWTTMCTGLERNAMTKLAREYFVQM 169
           +  V+  C+H GLIA+                    +  M   L R      A+ +  +M
Sbjct: 402 FVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERM 461

Query: 170 P-NKDIVAWNAMITAYVDAGNMAQAS----ELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
           P   D   W A++ A     N+  A      LFNL  + N   +  + + YA +G    A
Sbjct: 462 PITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAE-NPGRYILLSNIYASSGKRKEA 520

Query: 225 MKLLNLM 231
             +  LM
Sbjct: 521 DDIRALM 527



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           ++ A   F    + +V  W  +I A+SN  H     RL++RML+ G +    TF  +L  
Sbjct: 50  ISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKA 109

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C      E G +  +     +G++      + L  +  R G    + +V  +MP  ER+ 
Sbjct: 110 CGCLADFELGARA-HAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMP--ERNV 166

Query: 413 VVLGALLGA 421
           V   +++GA
Sbjct: 167 VSWSSMVGA 175


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 235/455 (51%), Gaps = 36/455 (7%)

Query: 57   NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
            +I   +++I  Y   G +  AR VFDE+   +V SW SLI GY +  +  +   LF  M 
Sbjct: 586  DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 117  LK--LKNVVSWTTVVLGCAHNG--------------LIAKLEVISWTTMCTGLERNAMTK 160
             +    + V+   VV  C   G                 +++V    T+     R    +
Sbjct: 646  NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 161  LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
             A + F  M  ++IV  NAMI AY    ++  A ++F+ +P++++ +W++MI  Y++   
Sbjct: 706  SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765

Query: 221  EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLT 275
               A+++   M +++  P+     S+++SC        AH  A+ LG     + +  ++ 
Sbjct: 766  FSDALEIFRQMQRAKVKPDAIVIASVVSSC--------AHLGALDLGKWVHEYVRRNNIK 817

Query: 276  YKCTCHYVFWDWGFQLDVNSARLA---FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
                      D    +   SA+ A   F+ ++ KD +SW ++I+  +N+G   +   LF 
Sbjct: 818  ADTIMENSLID--MYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQ 875

Query: 333  RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
             ML  G +P+ +TF+GVL  C++A LVE+G   F  M R Y  +P+ +HY C+ D+L RA
Sbjct: 876  AMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRA 935

Query: 393  GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
            GQ+++A+R +++MP  + D VV   LLG+C  HGDV +A+ + ++L EL+PS+SG Y L 
Sbjct: 936  GQLEKALRFITEMPI-DPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLL 994

Query: 453  ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
            +N +A+   W E   VR+ M +  V+K    S +E
Sbjct: 995  SNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 171/326 (52%), Gaps = 7/326 (2%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           +R  F +MP K+ V+WN +IT +   G +  A  LF  MP RNV +W+ MID Y R    
Sbjct: 143 SRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRP 202

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
             A+ L   M      P+E T  +++ +   + + ++  AL    G+ ++  L +     
Sbjct: 203 VEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALH---GYCEKEGLVWDVRVG 259

Query: 282 YVFWDWGFQLDV--NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
               D   ++    NS R+  E L+ +++VSWT++I  ++ HG   +   LFA M ++G 
Sbjct: 260 NSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGI 319

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           +P+ ITF+ VL  CSH GLVE+G   F  M   Y   P  +H+ C+ D+L RAG+++EA 
Sbjct: 320 RPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAE 379

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
           +++   P  E +  V   LLG C  +G+V M +   ++++ L+    G +V+ +N+    
Sbjct: 380 QIIRDFPV-EVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTEL 438

Query: 460 GEWDEFAQVRKKMERRVKKVASFSQI 485
             + +   VRK +++R   V SF  I
Sbjct: 439 RRFSDAEIVRKLVDQR-NSVKSFFNI 463



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 27/298 (9%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++  F R   L  AE +F  M    RNIV  +AMI  Y K   +  ARK+FD+I + ++
Sbjct: 693 TLVDYFGRRGQLQSAEKVFFNM--KVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 750

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW+S+ISGY +A    +   +F +M   K+K + +   +VV  CAH G    L++  W 
Sbjct: 751 ISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLG---ALDLGKWV 807

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
                + RN +              D +  N++I  Y+  G+  +A ++F  M +++  +
Sbjct: 808 H--EYVRRNNI------------KADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLS 853

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG--MLENMLAHALAIR 265
           WN++I   A NG E  ++ L   M    F PN  T   +L +C    ++E  L H  +++
Sbjct: 854 WNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMK 913

Query: 266 LGFEQETSLT-YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
             +  E  +  Y C    +      QL+  + R   E     D V W  ++ + + HG
Sbjct: 914 RLYSLEPQMKHYGCVVDLL--GRAGQLE-KALRFITEMPIDPDPVVWRILLGSCNTHG 968



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 23/220 (10%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            +A+++ Y+  G + ++R  F+E+   N  SW  +I+G+    +V+  R LF+RMP   +
Sbjct: 127 HTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMP--CR 184

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA-------------REYFV 167
           NVVSW+ ++ G        +   +    M  G+  + +T LA              E   
Sbjct: 185 NVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALH 244

Query: 168 QMPNKDIVAW-----NAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPE 221
               K+ + W     N++I  Y   G++  +  +F+ ++ +RN+ +W ++I  +A +G  
Sbjct: 245 GYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLS 304

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA 259
             A++L   M ++   PN  T  S+L +C   G++E  +A
Sbjct: 305 VKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVA 344



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 169/451 (37%), Gaps = 92/451 (20%)

Query: 5   GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
           GC    + A   F+EM   + VS   +IT F    ++  A  LF  MP   RN+V+ S M
Sbjct: 138 GCLADSRMA---FEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMP--CRNVVSWSGM 192

Query: 65  IDGYVKAGRVDEARKVFDEIY------------------------------------EGN 88
           IDGY +A R  EA  +F  +                                     EG 
Sbjct: 193 IDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGL 252

Query: 89  VYS---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEV- 143
           V+      SLI  Y K   +    R+FD M L  +N+VSWT+++ G A +GL  K +E+ 
Sbjct: 253 VWDVRVGNSLIDLYAKIGSIQNSLRVFDEM-LDRRNLVSWTSIISGFAMHGLSVKAVELF 311

Query: 144 ------------ISWTTMCTGLERNAMTKLAREYFVQM-----PNKDIVAWNAMITAYVD 186
                       I++ ++        + +    +F  M      N D+  +  +I     
Sbjct: 312 ADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGR 371

Query: 187 AGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGP----EGAAMKLLNLMFQSRFMPNET 241
           AG + +A ++    P + N   W  ++   ++ G     E    K+L L  +  F  +  
Sbjct: 372 AGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILAL--EREFGGDFV 429

Query: 242 TCTSILTSCEGMLENMLAHALA------------IRLGFEQETSLTYKCT----CHY--- 282
             +++LT      +  +   L             +R+   +     Y  +    CHY   
Sbjct: 430 VLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMS 489

Query: 283 -VFWDWG-FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
            V   +   Q D+  A   F+++EA     W  +I   +           + +    G  
Sbjct: 490 KVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV 549

Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           PD +TF  +L  C+    + +G +  N +++
Sbjct: 550 PDNLTFPFILKACARINALNEGEQMHNHITK 580



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 46/268 (17%)

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT--CTSILTSC 250
           A ++F+  P      W+A++  Y+ +GP       L L   +R+   + T   T  L +C
Sbjct: 47  AHQVFDRRPT----PWHALLKAYS-HGPH--PQDALQLFRHARWHAADDTYAFTFALKAC 99

Query: 251 EGM---LENMLAHALAIRLGFEQET-------SLTYKCTC--------------HYVFWD 286
            G+      M  H L +R GFE +T       ++   C C              + V W+
Sbjct: 100 AGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWN 159

Query: 287 --------WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
                   WG   +V  ARL FER+  ++VVSW+ MI  Y+      +   LF RM+  G
Sbjct: 160 VVITGFAGWG---EVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEG 216

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
             P EIT + V+   S+ G +  G        +  G        + L D+  + G ++ +
Sbjct: 217 ISPSEITVLAVVPALSNVGKILIGEALHGYCEKE-GLVWDVRVGNSLIDLYAKIGSIQNS 275

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHG 426
           +RV  +M    R+ V   +++    +HG
Sbjct: 276 LRVFDEM-LDRRNLVSWTSIISGFAMHG 302



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 58/286 (20%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
           FG  G+++ A K+F  M   + V+  +MI  + +  D+  A  +F  +P  ++++++ S+
Sbjct: 698 FGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP--KKDLISWSS 755

Query: 64  MIDGYVKAGRVDEARKVF----------DEIYEGNVYS------------WT-------- 93
           MI GY +A    +A ++F          D I   +V S            W         
Sbjct: 756 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 815

Query: 94  ---------SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
                    SLI  Y K     E  ++F  M  K K+ +SW ++++G A+NG   +   +
Sbjct: 816 IKADTIMENSLIDMYMKCGSAKEALQVFKEM--KEKDTLSWNSIIIGLANNGFEKESLNL 873

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
               +  G   N +T L     +   N  +V             +      L++L PQ  
Sbjct: 874 FQAMLTEGFRPNGVTFLG--VLIACANAKLVEEG--------LDHFESMKRLYSLEPQMK 923

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              +  ++D   R G    A++ +  M      P+      +L SC
Sbjct: 924 --HYGCVVDLLGRAGQLEKALRFITEM---PIDPDPVVWRILLGSC 964


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 236/438 (53%), Gaps = 25/438 (5%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           +++  +A++  Y K   + +ARK+FD++ E +   W  +I+ Y +  +  E   LF  M 
Sbjct: 260 DLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMA 319

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNKDIV 175
                   +T + +  +    IA+L+ + W       + RN              +  + 
Sbjct: 320 RSGIRSDLFTALPVISS----IAQLKCVDWGKQTHAHILRNG------------SDSQVS 363

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N++I  Y +   +  A ++FN M  ++V +W+AMI  Y +NG    A+ L + M    
Sbjct: 364 VHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDG 423

Query: 236 FMPNETTCTSILTSCE--GMLENM-LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +     +IL +    G LEN+   H  +++LG    TSL    T   + +     ++
Sbjct: 424 IQADFVIMINILPAFVHIGALENVKYLHGYSMKLGL---TSLPSLNTALLITYAKCGSIE 480

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +       E+++ KD++ W +MI A++NHG   Q F+L+ RM  S +KPD++TF+G+L+ 
Sbjct: 481 MAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTA 540

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           C ++GLVEKG++ F  M+ +YG +P  EHY+C+ ++L RAG + EA  +V  MP  + D 
Sbjct: 541 CVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPI-KPDA 599

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V G LL AC++H   ++A++  E+LI ++P ++G Y+L +N++AA G+WD  A++R  +
Sbjct: 600 RVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFL 659

Query: 473 ERR-VKKVASFSQIEVKG 489
             + +KK+   S +E+ G
Sbjct: 660 RNKGLKKIPGCSWLEING 677



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 60/287 (20%)

Query: 12  EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE------------------ 53
           +A KLFD+M + D V    MI  + R     +   LF++M                    
Sbjct: 279 DARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIA 338

Query: 54  -------------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTS 94
                              S   +   +++ID Y +   +D A K+F+ + + +V SW++
Sbjct: 339 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 398

Query: 95  LISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152
           +I GY K  Q      LF +M       + V    ++    H G +  ++ +   +M  G
Sbjct: 399 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 458

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF--NLMPQRNVWTWNA 210
           L               +P+ +     A++  Y   G++  A  LF    +  +++  WN+
Sbjct: 459 L-------------TSLPSLN----TALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNS 501

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           MI  +A +G      KL N M  S   P++ T   +LT+C   G++E
Sbjct: 502 MISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 548



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 8/174 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I  Y + G +  + ++F  +   N+  +NA++    R G     + +   M      P+
Sbjct: 65  LIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPD 124

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           E T   +L SC            H   ++LGF+      +      +   +   ++  +A
Sbjct: 125 EETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFD-----LFDVVATALAEMYEECIEFENA 179

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
              F++   KD+   +++      + +G  +FR+F RM+     PD  TF  +L
Sbjct: 180 HQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLL 233


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/537 (28%), Positives = 262/537 (48%), Gaps = 70/537 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMIT-------------VFLR------------- 37
           F C G+V+ A  LFDE+S  D VS  SMI+              F++             
Sbjct: 204 FKC-GEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATL 262

Query: 38  -----------NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
                      N  L +A   +         ++  + ++D Y K G ++ A +VF ++ E
Sbjct: 263 VNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGE 322

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCA-HNGLIAKLEV 143
             + SWTS+I+ + +     E   LFD M  K    ++ + T+VV  CA  N L    EV
Sbjct: 323 TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREV 382

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
            +       +++N M              ++   NA++  Y   G+M +A+ +F+ +P +
Sbjct: 383 HNH------IKKNNM------------GSNLPVSNALMNMYAKCGSMEEANLIFSQLPVK 424

Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENMLAH 260
           N+ +WN MI  Y++N     A++L  L  Q +  P++ T   +L +C G+    +    H
Sbjct: 425 NIVSWNTMIGGYSQNSLPNEALQLF-LDMQKQLKPDDVTMACVLPACAGLAALEKGREIH 483

Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
              +R G+  +  L   C    ++   G  +    A+  F+ +  KD++ WT MI  Y  
Sbjct: 484 GHILRKGYFSD--LHVACALVDMYVKCGLLV---LAQQLFDMIPKKDMILWTVMIAGYGM 538

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
           HG G +    F +M  +G +P+E +F  +L  C+H+GL+++G K F+ M      +P+ E
Sbjct: 539 HGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLE 598

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           HY+C+ D+L R+G +  A + +  MP  + D  + GALL  CR+H DV +A+ + E + E
Sbjct: 599 HYACMVDLLIRSGNLSRAYKFIETMPI-KPDAAIWGALLSGCRIHHDVELAEKVAEHIFE 657

Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
           L+P ++  YVL ANV+A   +W+E  ++++++ +  +K     S IEV+GK +   A
Sbjct: 658 LEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFA 714



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 202/484 (41%), Gaps = 38/484 (7%)

Query: 2   SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRN-------HDLPKAEALFRAMPES 54
           S++   G  +E+  LF++M +      +   T  L+         +  +       +   
Sbjct: 131 SEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFG 190

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
             N V  S +I  Y K G V+ AR +FDE+ + +V SW S+ISG         G   F +
Sbjct: 191 SYNAVVNS-LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQ 249

Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           M L L   V   T+V     N L+A          C  +    + +    Y V+      
Sbjct: 250 M-LNLGVDVDSATLV-----NVLVA----------CANVGNLTLGRALHAYGVKAGFSGG 293

Query: 175 VAW-NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           V + N ++  Y   GN+  A+E+F  M +  + +W ++I  + R G    A+ L + M  
Sbjct: 294 VMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQS 353

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
               P+    TS++ +C     N L     +    ++    +     + +   +     +
Sbjct: 354 KGLRPDIYAVTSVVHACA--CSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSM 411

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A L F +L  K++VSW  MI  YS +    +  +LF  M K   KPD++T   VL  C
Sbjct: 412 EEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPAC 470

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC-LADILRRAGQVKEAMRVVSKMPPHERDH 412
           +    +EKGR+    + R   F     H +C L D+  + G +  A ++   +P  ++D 
Sbjct: 471 AGLAALEKGREIHGHILRKGYFSDL--HVACALVDMYVKCGLLVLAQQLFDMIP--KKDM 526

Query: 413 VVLGALLGACRLHGDVRMADYIGE--RLIELQP-SSSGAYVLSANVHAA--RGEWDEFAQ 467
           ++   ++    +HG  + A    E  R+  ++P  SS   +L A  H+   +  W  F  
Sbjct: 527 ILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDS 586

Query: 468 VRKK 471
           ++ +
Sbjct: 587 MKSE 590



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 150/345 (43%), Gaps = 30/345 (8%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSW 125
           YV  G + + R++FD I    ++ W  L+S Y K     E   LF++M  L ++ +  ++
Sbjct: 102 YVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTF 161

Query: 126 TTVVLGCAHNGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
           T V+ G A +  + + + +    +  G    NA+                   N++I AY
Sbjct: 162 TCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVV------------------NSLIAAY 203

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
              G +  A  LF+ +  R+V +WN+MI     NG     ++    M       +  T  
Sbjct: 204 FKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLV 263

Query: 245 SILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
           ++L +C  +    L    HA  ++ GF     + +  T   ++   G   ++N A   F 
Sbjct: 264 NVLVACANVGNLTLGRALHAYGVKAGF--SGGVMFNNTLLDMYSKCG---NLNGANEVFV 318

Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
           ++    +VSWT++I A+   G  ++   LF  M   G +PD      V+  C+ +  ++K
Sbjct: 319 KMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDK 378

Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           GR+  N + +           + L ++  + G ++EA  + S++P
Sbjct: 379 GREVHNHIKKN-NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLP 422



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 9/236 (3%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D V    ++  YV+ G++ +   +F+ +    ++ WN ++  YA+ G    ++ L   M 
Sbjct: 91  DEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ 150

Query: 233 QSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
           +     +  T T +L    +   + E    H   ++LGF    ++       Y  +  G 
Sbjct: 151 ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAY--FKCG- 207

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
             +V SAR+ F+ L  +DVVSW +MI   + +G        F +ML  G   D  T V V
Sbjct: 208 --EVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNV 265

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
           L  C++ G +  GR       +A GF       + L D+  + G +  A  V  KM
Sbjct: 266 LVACANVGNLTLGRALHAYGVKA-GFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM 320


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 232/475 (48%), Gaps = 43/475 (9%)

Query: 25  PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84
           P + A++++ + ++  LP A  LF   P  +R+I   S+++     +   + A  +   +
Sbjct: 14  PPNPAALVSAYAKSRLLPDALHLFDETP--RRDIYIYSSLLTAISHSASPELALPILRCM 71

Query: 85  YEGNV-----YSWTSLISGYFKARQVDEGRRL---FDRMPLKLKNVVSWTTVVLGCAHNG 136
              +      +  +S+ S + + R    GR+L   F   P    +VV  + V + C    
Sbjct: 72  LSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCK--- 128

Query: 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196
                        C   +        R+ F  M  K+ V W A+++ Y   G   +A +L
Sbjct: 129 -------------CGSPDD------GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQL 169

Query: 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256
           F  MP RN++ W A+I      G    A++L   M +     ++    SI+      L  
Sbjct: 170 FRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAA 229

Query: 257 MLA----HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWT 312
            +     H  A+RLGF     L+     + +   +    D+ SAR  FE +  +DV+SWT
Sbjct: 230 FVLGRQLHGSAMRLGF-----LSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWT 284

Query: 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372
            M++  + HG   +   L+ RM+ +G KP+E+TFVG++  CSHAGLV+KGR+ F  M   
Sbjct: 285 TMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNE 344

Query: 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432
           YG  PR +HY+C  D+L R+G + EA  +++ M P+E D    GALL AC  + D  M  
Sbjct: 345 YGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM-PYEPDEATWGALLSACTKYKDAEMCI 403

Query: 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
            I ++L+EL+P  S  Y+L +NV+A  G+WD  A+VRK M    ++K   +S IE
Sbjct: 404 RISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIE 458



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 37/257 (14%)

Query: 22  QPDPVSCASMITVF--LRNHDLPKA-EALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78
            PD    +S+ +VF  LR+  L +   A F A P +  ++V +S+++D Y K G  D+ R
Sbjct: 78  HPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVV-KSSLVDMYCKCGSPDDGR 136

Query: 79  KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           KVFD +   N   WT+L+SGY    + +E  +LF  MP   +N+ +WT ++ G  + G  
Sbjct: 137 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP--GRNLFAWTALISGLVNTG-- 192

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQM---PNKDIVAW------------------ 177
              E +    +   + R+ + ++   + + +    + D+ A+                  
Sbjct: 193 ---ESVGAVELFVEMRRDGV-RIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSN 248

Query: 178 ----NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               NA+I  Y    ++  A E+F  +  R+V +W  M+   A++G    A+ L + M  
Sbjct: 249 MIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVL 308

Query: 234 SRFMPNETTCTSILTSC 250
           +   PNE T   ++ +C
Sbjct: 309 AGAKPNEVTFVGLIYAC 325



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 106/265 (40%), Gaps = 64/265 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   +  K+FD MS  + V   ++++ +  N    +A  LFR+MP   RN+ A +A+I G
Sbjct: 130 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP--GRNLFAWTALISG 187

Query: 68  YVKAGRVDEARKVFDEI----------------------------------------YEG 87
            V  G    A ++F E+                                        +  
Sbjct: 188 LVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLS 247

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI--------- 138
           N+    +LI  Y K   +   R +F+   +  ++V+SWTT+V+G A +G           
Sbjct: 248 NMIVGNALIDMYSKCSDILSAREVFE--GITFRDVISWTTMVVGEAQHGRAEEALALYDR 305

Query: 139 -----AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYVD----AG 188
                AK   +++  +        + +  R+ F  M N+  I       T Y+D    +G
Sbjct: 306 MVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSG 365

Query: 189 NMAQASELFNLMP-QRNVWTWNAMI 212
           ++ +A EL   MP + +  TW A++
Sbjct: 366 HLLEAEELMTTMPYEPDEATWGALL 390


>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 515

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 222/447 (49%), Gaps = 28/447 (6%)

Query: 72  GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVV 129
           G    A  +F  I   N++ + S+I+ Y    Q  +   +F +M    ++ N  ++TT+V
Sbjct: 36  GDFRYAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLV 95

Query: 130 LGCAHNGLIAKLEVISW-----------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
             C     + ++  +S            +++     +++   LAR+ F +  N+++V W 
Sbjct: 96  KACVSLSSLEQVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWT 155

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--- 235
           ++++ Y   G + +A ++F+ MP RN  +++AM+  Y RNG     ++L   + +     
Sbjct: 156 SLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGC 215

Query: 236 --FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
                N     S+L +C       E    H+     G E +  L       Y+   W   
Sbjct: 216 ACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGW--- 272

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
             V  A   F ++  KDV +W+AMIL  + +G+      LF +M K G KP+E+TFVGVL
Sbjct: 273 --VKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVL 330

Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
           + C+H  L  +  + F +MS  Y   P  EHY C+ D+L R+GQVK+A+  ++ M   E 
Sbjct: 331 TACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHI-EP 389

Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
           D  + G+LL  C +HG   +   +G+ LIE +P  SG YVL AN++A  G+W+  ++VRK
Sbjct: 390 DGAIWGSLLNGCLMHGHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRK 449

Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLLA 496
            M +R V  V+ +S IE+    H   A
Sbjct: 450 LMKDRGVMIVSGWSFIEIDQTIHKFFA 476



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 32/263 (12%)

Query: 14  TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR 73
           TK+ +   +P+  +  +++   +    L +   L   +  S  ++   S++I+ + K   
Sbjct: 77  TKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLSMKLGNSS-DVYFVSSVINAFSKHSA 135

Query: 74  VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133
           +  AR+VFDE    NV  WTSL+SGY     V+E R +FD+MP  L+N  S++ +V G  
Sbjct: 136 IHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMP--LRNEASYSAMVSGYV 193

Query: 134 HNGLIAK-------------------------LEVISWTTMCTGLERNAMTKLAREYFVQ 168
            NG  ++                         + V++  TM    E     K    Y  +
Sbjct: 194 RNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEEG---KWIHSYVEE 250

Query: 169 MP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
                D+    A+I  Y+  G +  A ++FN MP ++V TW+AMI   A NG    A++L
Sbjct: 251 NGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALEL 310

Query: 228 LNLMFQSRFMPNETTCTSILTSC 250
              M +    PNE T   +LT+C
Sbjct: 311 FEKMEKVGPKPNEVTFVGVLTAC 333



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 46/270 (17%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR---- 56
            S +   G V EA  +FD+M   +  S ++M++ ++RN    +   LFR + +  +    
Sbjct: 158 VSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCAC 217

Query: 57  ---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV-YSW---TSLISGYFKARQVDEGR 109
              N     ++++     G  +E + +   + E  + Y     T+LI  Y K   V    
Sbjct: 218 LKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAE 277

Query: 110 RLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           ++F++MP+K                       +V +W+ M  GL  N   K+A E F +M
Sbjct: 278 KVFNKMPVK-----------------------DVATWSAMILGLAINGNNKMALELFEKM 314

Query: 170 ----PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGP 220
               P  + V +  ++TA        +++ LF +M ++     ++  +  ++D  AR+G 
Sbjct: 315 EKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQ 374

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
              A+  +N M      P+     S+L  C
Sbjct: 375 VKKALTFINSM---HIEPDGAIWGSLLNGC 401


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 248/534 (46%), Gaps = 88/534 (16%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV--------- 59
           K++EA ++FDEMS+ + VS ++MI+ + +  +   A  LF     S+ NIV         
Sbjct: 53  KLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLF-----SKLNIVPNEYVYASV 107

Query: 60  ------------------------------AESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
                                           +A+I  Y+K G+  +A   ++E  E N 
Sbjct: 108 ISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNP 167

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            ++ +LI+G+ + +Q D+G  +   M       +  ++  ++  C     + + E++   
Sbjct: 168 VAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQ 227

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           T+   L   A                    N +IT Y     + +A + F  + ++++ +
Sbjct: 228 TIKLKLNSTAFIG-----------------NLIITMYSKLNLLEEAEKAFRSIEEKDLIS 270

Query: 208 WNAMIDRYAR-NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALA 263
           WN  I   +  N  E A      ++ + R  P+E T  S L +C G   M      H   
Sbjct: 271 WNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHL 330

Query: 264 IRLGFEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
           IR    Q+        ++  KC C            +  A   F ++E +++VSW  MI 
Sbjct: 331 IRTRLYQDVGAGNALINMYAKCGC------------IAKAYYIFSKMEHQNLVSWNTMIA 378

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            + NHG G + F LFA+M   G KPD +TFVG+L+  +HAGLV++G   FN M   YG  
Sbjct: 379 GFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGIS 438

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
           P  EH+SCL D+L RAG++ EA   + K  P   D VVLG+LL ACRLHGDV        
Sbjct: 439 PEIEHFSCLIDLLGRAGRLNEAKEYMKKF-PFGHDTVVLGSLLSACRLHGDVDTGKCFAR 497

Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKG 489
           +L++LQP+++  YVL +N++A+   WD  A+  K ++   +KK    S IEV G
Sbjct: 498 QLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEVNG 551



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 163/379 (43%), Gaps = 36/379 (9%)

Query: 39  HDLPKAEALFRAMP--------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           H   K +AL + +P         ++ +++  + +++ Y K  ++ EAR+VFDE+ E N+ 
Sbjct: 11  HQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLV 70

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           SW+++ISGY +  +      LF ++ + + N   + +V+  CA    + + + I    + 
Sbjct: 71  SWSAMISGYEQIGEPISALGLFSKLNI-VPNEYVYASVISACASLKGLVQGKQIHGQALK 129

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            GL+  +                    NA+IT Y+  G  + A   +N   + N   +NA
Sbjct: 130 FGLDSVSFVS-----------------NALITMYMKCGKCSDALLAYNEALELNPVAYNA 172

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLG 267
           +I  +  N       ++L +M+Q  F P+  T   +L +C   + +    L H   I+L 
Sbjct: 173 LITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLK 232

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
                 +       Y   +      +  A  AF  +E KD++SW   I + S+     + 
Sbjct: 233 LNSTAFIGNLIITMYSKLNL-----LEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKA 287

Query: 328 FRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              F  ML     +PDE TF   L+ CS    +  G++    + R   ++      + L 
Sbjct: 288 LEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAG-NALI 346

Query: 387 DILRRAGQVKEAMRVVSKM 405
           ++  + G + +A  + SKM
Sbjct: 347 NMYAKCGCIAKAYYIFSKM 365


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 230/445 (51%), Gaps = 39/445 (8%)

Query: 76  EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVL 130
            A+ +F ++   NV+SW ++I  +      +     F+R  L L      N   +T+++ 
Sbjct: 63  HAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQ-LSLPSAPNPNEYIYTSLIK 121

Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAM--TKLAREYFV------------QMPNKDIVA 176
            CA    IA    +    + +GL+ N    T L   YF             +MP +D+V+
Sbjct: 122 ACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVS 181

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SR 235
           WN M++ Y   G++  A  +F+ M +R+V +WNAMI  Y +NG    A+++ + M +   
Sbjct: 182 WNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGG 241

Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD--- 292
            +P++ T  S+L++C        AH  A+  G   +  + ++     ++      +D   
Sbjct: 242 VVPDDVTLVSVLSAC--------AHVGALDFGRWIDRFVGWRGRGLNLYLGNAL-IDMYA 292

Query: 293 ----VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  AR  F+ +  +DV+SW+ MI     HG   + F  +++ML+ G KP+E+TF+G
Sbjct: 293 KCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMG 352

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           +LS CSHAGLV+KG + F+ M + Y   P+  HY C+ D+L RAG++ EA  +++ MP  
Sbjct: 353 LLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPI- 411

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E + +V GALLG CR+H D R  + + + L+EL    +G+YV  A   A+ G  D+ A  
Sbjct: 412 EPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANC 471

Query: 469 RKKMERR-VKKVASFSQIEVKGKDH 492
             +M+ + + K    S+IEV    H
Sbjct: 472 WLRMQHKGIIKDPGCSKIEVHNTVH 496



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 155/347 (44%), Gaps = 49/347 (14%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN--LMFQSRFM 237
           +I A     N+  A  +F  +P  NV++WNA+I  +   G    A+   N  L   S   
Sbjct: 51  LIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPN 110

Query: 238 PNETTCTSILTSCEGM---LENMLAHALAIRLGFEQETSLTYKCTCHY------------ 282
           PNE   TS++ +C G+    + +  HA+ I+ G +    L       Y            
Sbjct: 111 PNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQV 170

Query: 283 ---------VFWDW---GFQL--DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
                    V W+    G+ L  D+ SAR  F+++  +DV+SW AMI  Y  +G      
Sbjct: 171 FDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAI 230

Query: 329 RLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY---SC 384
            +F  M K  G  PD++T V VLS C+H G ++ GR     + R  G++ R  +    + 
Sbjct: 231 EVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGR----WIDRFVGWRGRGLNLYLGNA 286

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQ 442
           L D+  + G ++EA R+   M   ERD +    ++     HGD   A     +++E  ++
Sbjct: 287 LIDMYAKCGTMEEARRIFDGM--RERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVK 344

Query: 443 PSS-SGAYVLSANVHAARGEWDEFAQVRKKM---ERRVKKVASFSQI 485
           P+  +   +LSA  HA  G  D+  ++  +M    R V KV  +  +
Sbjct: 345 PNEVTFMGLLSACSHA--GLVDKGIELFSRMIQEYRIVPKVGHYGCV 389



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 24/225 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S++ ++ +  +   A  +F  MP   R++V+ + M+ GY   G ++ AR+VFD++ E +V
Sbjct: 153 SLVDMYFKFREPASAGQVFDEMP--LRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDV 210

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVIS 145
            SW ++I GY +  +  +   +F  M  K+  V    V+  +V+  CAH   +  L+   
Sbjct: 211 ISWNAMIGGYVQNGKYSDAIEVFHEMQ-KVGGVVPDDVTLVSVLSACAH---VGALDFGR 266

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W     G     +              ++   NA+I  Y   G M +A  +F+ M +R+V
Sbjct: 267 WIDRFVGWRGRGL--------------NLYLGNALIDMYAKCGTMEEARRIFDGMRERDV 312

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            +W+ MI     +G    A    + M +    PNE T   +L++C
Sbjct: 313 ISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSAC 357


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 243/515 (47%), Gaps = 57/515 (11%)

Query: 4    FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
            +   G+      +FDE+ + + V    MI  ++ NH    A  +F+ M  +   I  +  
Sbjct: 1070 YAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM--AGHGIDPDHY 1127

Query: 64   MIDGYVKAGRVDEARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRM 115
                 +KA    E   V  +I+          NV+    LIS Y K   + E  R+ D M
Sbjct: 1128 TYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZM 1187

Query: 116  PLKLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
            P +  +VVSW ++V GCA NG     LEV      C  +E   +   A      +P    
Sbjct: 1188 PCR--DVVSWNSLVAGCARNGQFDDALEV------CKEMELLGLKPDAGTMASLLP---- 1235

Query: 175  VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
                A+    +D  N++   E+F  +  +++ +WN MI  Y  N     A+ +   M   
Sbjct: 1236 ----AVTNTCLD--NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 1289

Query: 235  RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKCTCHYVF 284
               P+  +  S+L +C  +   +L    H   +R   +           +  KC C    
Sbjct: 1290 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGC---- 1345

Query: 285  WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
                    +  AR  F++++ +DVVSWT+MI AY  +G G     LF+RM   G  PD I
Sbjct: 1346 --------LEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSI 1397

Query: 345  TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
             FV VLS CSHAGL+++GR  F LM+      PR EH+ C+ D+L RAGQV EA   + +
Sbjct: 1398 AFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQ 1457

Query: 405  MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462
            MP  P+ER   V GALL ACR++ ++ +     ++L +L P  SG YVL +N++A  G W
Sbjct: 1458 MPMEPNER---VWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRW 1514

Query: 463  DEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            ++   VR  M+ + +KK+   S  E+  + HT LA
Sbjct: 1515 EDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLA 1549



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 22/181 (12%)

Query: 180  MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
            ++ AY   G       +F+ +P++NV  +N MI  Y  N     A+ +   M      P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 240  ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
              T   +L +  G  +    M  HA  +R+G +          S+  KC C         
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCL-------- 1177

Query: 290  QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
               V + R+  + +  +DVVSW +++   + +G       +   M   G KPD  T   +
Sbjct: 1178 ---VEACRV-LDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASL 1233

Query: 350  L 350
            L
Sbjct: 1234 L 1234


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 221/449 (49%), Gaps = 34/449 (7%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           + V  + ++D Y   G V  AR+VFDE+  +GNV+ W  LI  Y +    +    L+  M
Sbjct: 102 DAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAM 161

Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
                +K  N  ++  V+  CA     A L++ +         R    ++ R  +     
Sbjct: 162 LAYGSMKPDN-FTYPPVLKACA-----ALLDLSA--------GREVHDRVMRTNWAT--- 204

Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
            D+     +I  Y   G M +A  +FN    R+   WN+MI    +NG    A+ L   M
Sbjct: 205 -DVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNM 263

Query: 232 FQSRFMPNETTC---TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288
                 P   T     S       +      H    R GF  +  L       Y    W 
Sbjct: 264 AAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGW- 322

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFV 347
               V  A + FE+L  ++++SW AMI  +  HGH    F LF+RM  ++   PD ITFV
Sbjct: 323 ----VMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFV 378

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
           GVLS C+H G+V++ ++ F+LM   Y  KP  +HY+CL D+L  +G+ KEA  V+  M  
Sbjct: 379 GVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLV 438

Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
            + D  + GALL  C++H +V +A+   ++LIEL+P  +G YVL +N++A  G+W+E A+
Sbjct: 439 -KPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAAR 497

Query: 468 VRKKMERR-VKKVASFSQIEVKGKDHTLL 495
           VRK M  R +KK+ + S IE+KGK H  L
Sbjct: 498 VRKLMTNRGLKKIIACSWIELKGKFHGFL 526


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 232/495 (46%), Gaps = 66/495 (13%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S +  +  + +A  LFDE  + D    +S++T    +     A  + R M  +      
Sbjct: 45  VSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPD 104

Query: 56  RNIVAESAMIDGYVKA---GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
             +++  A +   +++   GR   A  V    Y G+    +SL+  Y K    D+GR++F
Sbjct: 105 HFVISSVASVFARLRSRRLGRQLHAHFVVSP-YNGDDVVKSSLVDMYCKCGSPDDGRKVF 163

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           D M    KN V WT +V G A NG                      ++ A + F  MP +
Sbjct: 164 DSM--SAKNSVVWTALVSGYASNG---------------------RSEEALQLFRSMPGR 200

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           ++ AW A+I+  V+ G    A ELF  M +  V   +A +      G    A  +L    
Sbjct: 201 NLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQL 260

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
               M              G L NM+     I         +  KC+            D
Sbjct: 261 HGSTMR------------LGFLSNMIVGNALI--------DMYSKCS------------D 288

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           + SAR  FE +  +DV+SWT M++  + HG   +   L+ RM+ +G KP+E+TFVG++  
Sbjct: 289 ILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYA 348

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGLV+KGR+ F  M   YG  PR +HY+C  D+L R+G + EA  +++ M P+E D 
Sbjct: 349 CSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM-PYEPDE 407

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
              GALL AC  + D  M   I ++L+EL+P  S  Y+L +NV+A  G+WD  A+VRK M
Sbjct: 408 ATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCM 467

Query: 473 -ERRVKKVASFSQIE 486
               ++K   +S IE
Sbjct: 468 IGLEIRKEPGYSWIE 482


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 256/515 (49%), Gaps = 50/515 (9%)

Query: 11  KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI--- 65
           ++A  LF E+ + D VS  S+I  + R     KA  LF  M ES  Q + V  S ++   
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 66  --DGYVKAGRVDEA----RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
             D  V+ G+   A    R   D +  GN     +LIS Y K +QVD    +F RM L  
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGN-----ALISMYAKCKQVDIAATVF-RM-LHQ 379

Query: 120 KNVVSWTTVVLGCAHNGLIAK-LEV-----------ISWTTMCTGLERNAMTKLAREYFV 167
           ++  SW+++V+     GL  K LE+             + T       ++ ++L R    
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLG 439

Query: 168 Q---------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           Q         +  ++    NA+I+ Y   GN   A ++F ++  ++V TW+A+I  Y+  
Sbjct: 440 QSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHL 499

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LEN-MLAHALAIRLGFEQETSLT 275
           G    A+ L + M      PN  T  S+++SC  +  LE+  L H+    +G E + S+ 
Sbjct: 500 GHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI- 558

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
             CT     +    QL +  AR  F+ +  +DVV+W  MI  Y  HG   Q  +LF+ M 
Sbjct: 559 --CTALVDMYMKCGQLGI--ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMME 614

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           +   KP+ +TF+ +LS C HAGLV+KGR+ F  M   Y  +P  +HY+C+ D+L ++G +
Sbjct: 615 RGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHL 673

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
           +EA  VVS MP  E D  + G LLGAC++H +  M   + ++     P + G Y+L +N 
Sbjct: 674 QEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNS 732

Query: 456 HAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           + +  +W+E  ++R  M+   V+K   +S I++ G
Sbjct: 733 YGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 200/475 (42%), Gaps = 78/475 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----------PESQR- 56
           G V++A +LFDEM + D V+  ++I+  + N    +  +    M          P S+  
Sbjct: 159 GSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTM 218

Query: 57  -------NIVAE-----------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
                   ++ E                       S++   Y K    ++AR +F E+ E
Sbjct: 219 ESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPE 278

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++ SWTSLI  Y +A   ++   LF                 LG   +GL     VIS 
Sbjct: 279 KDLVSWTSLIGAYCRAGHAEKAVELF-----------------LGMEESGLQPDEVVIS- 320

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKD----IVAWNAMITAYVDAGNMAQASELFNLMPQ 202
             +  GL  +A  +  + +   +  ++    ++  NA+I+ Y     +  A+ +F ++ Q
Sbjct: 321 -CLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR----FMPNETTCTSILTSCEGMLE-N 256
           R+  +W++M+  Y + G +   ++L   M F+ +    +  N         S  G L   
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLG 439

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             AH  +I+    + +S+       Y     G   + + AR  F  ++ KDVV+W+A+I 
Sbjct: 440 QSAHCYSIKHLAGENSSVANALISMY-----GRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           +YS+ GH      L+ +ML  G KP+  T V V+S C++   +E G    + + +  G +
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV-KDVGLE 553

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
                 + L D+  + GQ+  A ++   M   ERD V    ++    +HG+   A
Sbjct: 554 CDLSICTALVDMYMKCGQLGIARKMFDSML--ERDVVTWNVMISGYGMHGEAIQA 606



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 17/249 (6%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +  +   ++++  Y   G++  A  LF+ MP+R+V  W A+I     NG  G  +  L  
Sbjct: 142 DGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVR 201

Query: 231 MFQSR----FMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHY 282
           M +S       PN  T  S L +C G+L  +      H   ++ G     S+       Y
Sbjct: 202 MVRSAGDGGARPNSRTMESGLEAC-GVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMY 260

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
              D         AR+ F  L  KD+VSWT++I AY   GH  +   LF  M +SG +PD
Sbjct: 261 TKCD-----STEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPD 315

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
           E+    +L+   +   V +G KTF+       F       + L  +  +  QV  A  V 
Sbjct: 316 EVVISCLLAGLGNDAKV-RGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 403 SKMPPHERD 411
             +  H+RD
Sbjct: 375 RML--HQRD 381



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 118/307 (38%), Gaps = 63/307 (20%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++   S+++  Y + G V +A ++FDE+ E +V +WT++ISG     Q  EG    
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYL 199

Query: 113 DRM------------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL- 153
            RM                   L+   V+   +V  G   +G   K  V    ++ + L 
Sbjct: 200 VRMVRSAGDGGARPNSRTMESGLEACGVLGELSV--GTCLHGFGVKAGVGHCPSVVSSLF 257

Query: 154 ---ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
               +   T+ AR  F ++P KD+V+W ++I AY  AG+  +A ELF  M          
Sbjct: 258 SMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--------- 308

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLG 267
                                 +S   P+E   + +L        +      HA  +R  
Sbjct: 309 ----------------------ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F     +       Y       Q+D+  A   F  L  +D  SW++M++AY   G   + 
Sbjct: 347 FGDSVLIGNALISMYAKCK---QVDI--AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKC 401

Query: 328 FRLFARM 334
             L+  M
Sbjct: 402 LELYREM 408



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P  D  A   +++AY  AG  A A+  F   P  + + WN+++    R     + +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLG-FEQETSLTYKCTCHYVFW 285
            M  S   P+  T   + ++    G L      HA ++R G  E + S+    +  Y++ 
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKP 341
             G    V  A   F+ +  +DVV+WTA+I     +G   +      RM++S    G +P
Sbjct: 157 RCG---SVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKE 397
           +  T    L  C   G +  G          +G K    H     S L  +  +    ++
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCL-----HGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 398 AMRVVSKMPPHERDHVVLGALLGA-CRL-HGDVRMADYIGERLIELQP 443
           A  +  ++P  E+D V   +L+GA CR  H +  +  ++G     LQP
Sbjct: 269 ARILFPELP--EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 251/523 (47%), Gaps = 66/523 (12%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-------------- 54
           +V+++ ++FDE+   + V   SMI  +++N  L +   LF  M E               
Sbjct: 187 EVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVT 246

Query: 55  -----------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91
                                    N    + ++D Y K G + +A  VFDE+   ++ S
Sbjct: 247 ACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVS 306

Query: 92  WTSLISGYFKARQVDEGRRLF--DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
           WT++I GY +     E  +LF  +R    L N V+ ++V+  CA  G +     +  +  
Sbjct: 307 WTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN----MGRSVH 362

Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
           C G              +++ ++D    NA++  Y     +  A  +F  +  ++V  WN
Sbjct: 363 CLG--------------IKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWN 408

Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRL 266
           ++I  Y +NG    A++L + M      P+  T  S+L++C  +    +    H  AI+ 
Sbjct: 409 SIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKA 468

Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
           G    +   Y  T    F  +    D  SAR+ F+ +  K+ ++W+AMI  Y   G   +
Sbjct: 469 GLLSGS--VYVGTALLNF--YAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSR 524

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF  MLK   +P+E+ F  +LS CSH+G++ +G + FN M + Y F P  +HY+C+ 
Sbjct: 525 SLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMV 584

Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
           D+L RAG+++EA+  + K+P  + D  +LGA L  CRLH    + +    R++EL P  +
Sbjct: 585 DLLARAGRLEEALDFIEKIPI-QPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKA 643

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVK 488
             YVL +N++A+ G W +  QV + M++R + K+  +S ++++
Sbjct: 644 CYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIE 686



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 213/508 (41%), Gaps = 80/508 (15%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHD-------------------- 40
            S +G  G V+ A  +FD +  PD  S   MI  +  N                      
Sbjct: 78  VSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYD 137

Query: 41  ------LPKAEALFRAMPESQR-----------NIVAESAMIDGYVKAGRVDEARKVFDE 83
                 + KA +  R   E ++           +    + ++D Y K   V+++R+VFDE
Sbjct: 138 NVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDE 197

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKL 141
           I + NV  WTS+I GY +   + EG  LF+RM   L   N  +  ++V  C   G + + 
Sbjct: 198 ILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQG 257

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           + +    + +G + N+        F+  P  D+         Y   G++  A  +F+ + 
Sbjct: 258 KWVHGYVIKSGFDLNS--------FLVTPLLDL---------YFKCGDIRDAFSVFDELS 300

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENM-- 257
             ++ +W AMI  YA+ G    A+KL         +PN  T +S+L++C   G L NM  
Sbjct: 301 TIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSL-NMGR 359

Query: 258 LAHALAIRLGFEQETS----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
             H L I+LG E  T     +     CH           +  AR  FE +  KDV++W +
Sbjct: 360 SVHCLGIKLGSEDATFENALVDMYAKCHM----------IGDARYVFETVFDKDVIAWNS 409

Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
           +I  Y+ +G+ ++   LF +M      PD IT V VLS C+  G    G        +A 
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 469

Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV-RMAD 432
                    + L +   + G  + A  +  +M   E++ +   A++G   + GD  R  +
Sbjct: 470 LLSGSVYVGTALLNFYAKCGDAESARVIFDEMG--EKNTITWSAMIGGYGIQGDCSRSLE 527

Query: 433 YIGERLIE-LQPSSS-GAYVLSANVHAA 458
             G+ L E L+P+      +LSA  H+ 
Sbjct: 528 LFGDMLKEKLEPNEVIFTTILSACSHSG 555



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 26/345 (7%)

Query: 28  CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
           C S++ +      L K  AL      S+ +++ E+ ++  Y   G V+ AR +FD I   
Sbjct: 42  CFSLLGICKTVSSLRKIHALLVVHGLSE-DLLCETKLVSLYGSFGHVECARLMFDRIRNP 100

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           ++YSW  +I  YF      E  + ++    K  N   +  VV       ++ K       
Sbjct: 101 DLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLN--EYDNVVFS-----IVLK------- 146

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
             C+ L      +      V++ + D      ++  Y     +  +  +F+ +  RNV  
Sbjct: 147 -ACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVC 205

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAI 264
           W +MI  Y +N      + L N M +     N+ T  S++T+C     + +    H   I
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVI 265

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
           + GF+  + L           D  F+  D+  A   F+ L   D+VSWTAMI+ Y+  G+
Sbjct: 266 KSGFDLNSFLVTP------LLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGY 319

Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
             +  +LF         P+ +T   VLS C+  G +  GR    L
Sbjct: 320 PREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCL 364



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 25/256 (9%)

Query: 8   GKVKEATKLF-DEMSQ---PDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNIVAES 62
           G  +EA KLF DE  +   P+ V+ +S+++   +   L    ++    +     +   E+
Sbjct: 318 GYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFEN 377

Query: 63  AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LK 120
           A++D Y K   + +AR VF+ +++ +V +W S+ISGY +     E   LFD+M       
Sbjct: 378 ALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYP 437

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
           + ++  +V+  CA  G       +    +  GL   +                +    A+
Sbjct: 438 DAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGS----------------VYVGTAL 481

Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
           +  Y   G+   A  +F+ M ++N  TW+AMI  Y   G    +++L   M + +  PNE
Sbjct: 482 LNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNE 541

Query: 241 TTCTSILTSC--EGML 254
              T+IL++C   GML
Sbjct: 542 VIFTTILSACSHSGML 557


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 246/533 (46%), Gaps = 70/533 (13%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRN--------------------------HDLP 42
           +V EA K+FD M + D VS  +++  + +N                            LP
Sbjct: 185 QVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLP 244

Query: 43  KAEAL-------------FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
              AL              RA  +S  NI   +A++D Y K G +  AR +FD + E NV
Sbjct: 245 AVSALRLIRIGKEIHGYAMRAGFDSLVNIA--TALVDMYAKCGSLKTARLLFDGMLERNV 302

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV-VLGCAHNGLIAKLEVISWTT 148
            SW S+I  Y +     E   +F +M   L   V  T V V+G  H              
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKM---LDEGVKPTDVSVMGALH-------------- 345

Query: 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
            C  L      +   +  V++  ++++   N++I+ Y     +  A+ +F  +  R + +
Sbjct: 346 ACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVS 405

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAI 264
           WNAMI  +A+NG    A+   + M      P+  T  S++T+   +     A   H + +
Sbjct: 406 WNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
           R   ++   +T      Y          +  ARL F+ +  + V +W AMI  Y  HG G
Sbjct: 466 RNCLDKNVFVTTALVDMYAKCG-----AIMIARLIFDMMSERHVTTWNAMIDGYGTHGIG 520

Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
                LF  M K   +P+ +TF+ V+S CSH+GLVE G K F++M   Y  +P  +HY  
Sbjct: 521 KAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGA 580

Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           + D+L RAG++ EA   + +MP     + V GA+LGAC++H +V  A+ + ERL EL P 
Sbjct: 581 MVDLLGRAGRLNEAWDFIMQMPVKPAVN-VYGAMLGACQIHKNVNFAEKVAERLFELNPE 639

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
             G +VL AN++ A   W++  QVR  M R+ ++K    S +E+K + H+  +
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 167/397 (42%), Gaps = 72/397 (18%)

Query: 1   TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----- 55
            S F   G V EA ++F+ + +   V   +M+  F +  DL KA   F  M + +     
Sbjct: 76  VSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVV 135

Query: 56  --------------------------------RNIVAESAMIDGYVKAGRVDEARKVFDE 83
                                            ++ A + + + Y K  +V EARKVFD 
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDR 195

Query: 84  IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           + E ++ SW ++++GY         +    RM L++ N        L C  N   + + +
Sbjct: 196 MPERDLVSWNTIVAGY--------SQNGMARMALEMVN--------LMCEENLKPSFITI 239

Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW-NAMITAYVDAGNMAQASELFNLMPQ 202
           +S     + L    + K    Y ++     +V    A++  Y   G++  A  LF+ M +
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE 299

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLA 259
           RNV +WN+MID Y +N     AM +   M      P + +    L +C   G LE     
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359

Query: 260 HALAIRLGFEQETS-----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314
           H L++ L  ++  S     ++  C C           +V++A   F +L+++ +VSW AM
Sbjct: 360 HKLSVELELDRNVSVVNSLISMYCKCK----------EVDTAASMFGKLQSRTIVSWNAM 409

Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           IL ++ +G   +    F++M     KPD  T+V V++
Sbjct: 410 ILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 152/307 (49%), Gaps = 25/307 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKL 119
           ++ ++  + + G VDEA +VF+ I +     + +++ G+ K   +D+  + F RM   ++
Sbjct: 72  QTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV 131

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           + VV   T +L     G  A+L V        G E + +  L +  F    + D+ A   
Sbjct: 132 EPVVYNFTYLLKVC--GDEAELRV--------GKEIHGL--LVKSGF----SLDLFAMTG 175

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +   Y     + +A ++F+ MP+R++ +WN ++  Y++NG    A++++NLM +    P+
Sbjct: 176 LENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPS 235

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L +   +    +    H  A+R GF+   ++       Y          + +A
Sbjct: 236 FITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCG-----SLKTA 290

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           RL F+ +  ++VVSW +MI AY  + +  +   +F +ML  G KP +++ +G L  C+  
Sbjct: 291 RLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADL 350

Query: 357 GLVEKGR 363
           G +E+GR
Sbjct: 351 GDLERGR 357



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 30/275 (10%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRNIVAE 61
           G +K A  LFD M + + VS  SMI  +++N +  +A  +F+ M      P     + A 
Sbjct: 285 GSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344

Query: 62  SAMID-GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
            A  D G ++ GR      V  E+ + NV    SLIS Y K ++VD    +F +  L+ +
Sbjct: 345 HACADLGDLERGRFIHKLSVELEL-DRNVSVVNSLISMYCKCKEVDTAASMFGK--LQSR 401

Query: 121 NVVSWTTVVLGCAHNG--------------LIAKLEVISWTTMCTGLERNAMTKLAR-EY 165
            +VSW  ++LG A NG                 K +  ++ ++ T +   ++T  A+  +
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIH 461

Query: 166 FVQMPN---KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            V M N   K++    A++  Y   G +  A  +F++M +R+V TWNAMID Y  +G   
Sbjct: 462 GVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGK 521

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           AA++L   M +    PN  T  S++++C   G++E
Sbjct: 522 AALELFEEMQKGTIRPNGVTFLSVISACSHSGLVE 556



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 33/336 (9%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +++ +   G++ +A+ +F  + ++    +  M+  +A+      A+K    M      P 
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
               T +L  C    E  +    H L ++ GF  +        ++  KC           
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR---------- 184

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
              V+ AR  F+R+  +D+VSW  ++  YS +G       +   M +   KP  IT V V
Sbjct: 185 --QVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSV 242

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L   S   L+  G++      RA GF       + L D+  + G +K A  +   M   E
Sbjct: 243 LPAVSALRLIRIGKEIHGYAMRA-GFDSLVNIATALVDMYAKCGSLKTARLLFDGML--E 299

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA-------RGEW 462
           R+ V   +++ A   + + + A  I +++++     +   V+ A +HA        RG +
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGA-LHACADLGDLERGRF 358

Query: 463 DEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLAPM 498
                V  +++R V  V S   +  K K+    A M
Sbjct: 359 IHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASM 394



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 28/227 (12%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           F   G+  EA   F +M     +PD  +  S+IT          A+ +   +  +   +N
Sbjct: 413 FAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKN 472

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   +A++D Y K G +  AR +FD + E +V +W ++I GY           LF+ M  
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQK 532

Query: 118 KL--KNVVSWTTVVLGCAHNGLI-AKLEVI--------------SWTTMCTGLERNAMTK 160
                N V++ +V+  C+H+GL+ A L+                 +  M   L R     
Sbjct: 533 GTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLN 592

Query: 161 LAREYFVQMPNKDIV-AWNAMITAYVDAGNM----AQASELFNLMPQ 202
            A ++ +QMP K  V  + AM+ A     N+      A  LF L P+
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPE 639


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 214/427 (50%), Gaps = 30/427 (7%)

Query: 58  IVAESAMIDGYVKAG-RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           I  ++A++D Y      +D+A  VF  I+  N  SWT+LI+GY        G R+F +M 
Sbjct: 128 IYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQML 187

Query: 117 LKLK--NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
           L+    N  S++  V  C   G     E +       G E N                 +
Sbjct: 188 LEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESN-----------------L 230

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
              N+++  Y      ++A+  F  M QR++ TWN +I  Y R+ P   ++ + ++M   
Sbjct: 231 PVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPT-ESLYVFSMMESE 289

Query: 235 RFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
            F PN  T TSI+ +C  +         H   IR G +   +L+      Y         
Sbjct: 290 GFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCG----- 344

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++  +   F  +  +D+VSWTAM++ Y  HG+G +   LF +M++SG +PD + F+ +LS
Sbjct: 345 NIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILS 404

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSHAGLV++G + F LM   Y   P  E Y C+ D+L RAG+V+EA  ++  M P + D
Sbjct: 405 ACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESM-PFKPD 463

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
             V G  LGAC+ H    +      R+++L+P  +G YV+ +N++AA G+W EFA++RK 
Sbjct: 464 ECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKL 523

Query: 472 MERRVKK 478
           M+R   K
Sbjct: 524 MKRMGNK 530



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 94/198 (47%), Gaps = 20/198 (10%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + N+   ++++D Y +     EA + F E+ + ++ +W +LI+GY ++    E   +F  
Sbjct: 227 ESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPT-ESLYVFSM 285

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M  +    N  ++T+++  CA    +   + I    +  GL+ N                
Sbjct: 286 MESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGN---------------- 329

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
            +   NA+I  Y   GN+A + ++F  M +R++ +W AM+  Y  +G    A++L + M 
Sbjct: 330 -LALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 388

Query: 233 QSRFMPNETTCTSILTSC 250
           +S   P+     +IL++C
Sbjct: 389 RSGIRPDRVVFMAILSAC 406



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 20/199 (10%)

Query: 231 MFQSRFMPNETTCTSILTSCEGM---LENMLAHALAIRLGFE-----QETSLTYKCTCHY 282
           M      PN  T +S+L +C+GM       L H LAI+ G +         +    TC  
Sbjct: 84  MMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-- 141

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                   + ++ A + F  +  K+ VSWT +I  Y++   G+   R+F +ML    + +
Sbjct: 142 -------CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELN 194

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
             +F   +  C+  G    G +    +++ +GF+      + + D+  R     EA R  
Sbjct: 195 PFSFSIAVRACTSIGSHTFGEQLHAAVTK-HGFESNLPVMNSILDMYCRCSCFSEANRYF 253

Query: 403 SKMPPHERDHVVLGALLGA 421
            +M  ++RD +    L+  
Sbjct: 254 YEM--NQRDLITWNTLIAG 270



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 31/201 (15%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           N+   +A+ID Y K G + ++ +VF  +   ++ SWT+++ GY      +E   LFD+M 
Sbjct: 329 NLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 388

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-----------------LERN 156
              ++   VV +  ++  C+H GL+   E + +  +  G                 L R 
Sbjct: 389 RSGIRPDRVV-FMAILSACSHAGLVD--EGLRYFKLMVGDYNISPDQEIYGCVVDLLGRA 445

Query: 157 AMTKLAREYFVQMPNK-DIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNA 210
              + A E    MP K D   W   + A     + + G +A A  + +L P     T+  
Sbjct: 446 GKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLA-AHRILDLRPHM-AGTYVM 503

Query: 211 MIDRYARNGPEGAAMKLLNLM 231
           + + YA +G  G   +L  LM
Sbjct: 504 LSNIYAADGKWGEFARLRKLM 524


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/491 (28%), Positives = 236/491 (48%), Gaps = 27/491 (5%)

Query: 7   TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAM 64
           +G  KEA  L + +   D V+  S+++      D  +   +  +      +  +   + +
Sbjct: 229 SGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           ID Y + GR+ + +KVFD +Y  ++ SW S+I  Y    Q      LF  M L       
Sbjct: 289 IDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC 348

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
            T + L      ++++L  I       G        L + +F++    DI   NA++  Y
Sbjct: 349 LTLISLA----SILSQLGDIRACRSVQGF------TLRKGWFLE----DITIGNAVVVMY 394

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTC 243
              G +  A  +FN +P  +V +WN +I  YA+NG    A+++ N+M +      N+ T 
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454

Query: 244 TSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
            S+L +C     + + M  H   ++ G   +  +       Y     G    +  A   F
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY-----GKCGRLEDALSLF 509

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
            ++   + V W  +I  +  HGHG +   LF  ML  G KPD ITFV +LS CSH+GLV+
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
           +G+  F +M   YG  P  +HY C+ D+  RAGQ++ A++ +  M   + D  + GALL 
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL-QPDASIWGALLS 628

Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKV 479
           ACR+HG+V +     E L E++P   G +VL +N++A+ G+W+   ++R     + ++K 
Sbjct: 629 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688

Query: 480 ASFSQIEVKGK 490
             +S +EV  K
Sbjct: 689 PGWSSMEVDNK 699



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 155/396 (39%), Gaps = 65/396 (16%)

Query: 33  TVFLRNHDLPKAEALFRAMPESQR--NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           T+F    +L  A+ L   +  S++  N+   + +++ Y   G V  AR  FD I   +VY
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query: 91  SWTSLISGYFKARQVDEGRRLFD-------------RMPLKLKNVVSWTTVVLGCAHNGL 137
           +W  +ISGY +A    E  R F                P  LK   +  TV+ G   + L
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLK---ACRTVIDGNKIHCL 175

Query: 138 IAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
             K     +V    ++     R      AR  F +MP +D+ +WNAMI+ Y  +GN  +A
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
             L N +         AM                           +  T  S+L++C   
Sbjct: 236 LTLSNGL--------RAM---------------------------DSVTVVSLLSACTEA 260

Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
                 +  H+ +I+ G E E  ++ K    Y   ++G   D       F+R+  +D++S
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA--EFGRLRDCQK---VFDRMYVRDLIS 315

Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
           W ++I AY  +    +   LF  M  S  +PD +T + + S  S  G +   R       
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375

Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
           R   F       + +  +  + G V  A  V + +P
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/505 (29%), Positives = 253/505 (50%), Gaps = 41/505 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G +K+A +L      P   +   +I   +  + L     +   +  S   ++    + +I
Sbjct: 57  GNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLI 116

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-----PLKLK 120
           + Y   G VD A KVFDE  E  ++ W ++      A + ++   L+ +M     P    
Sbjct: 117 NMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIP---S 173

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCT---GLERNAMTKLAREYFVQMPNKDIVAW 177
           N  ++T V+  C          V+S  ++C    G E +A   + R  +       +   
Sbjct: 174 NRFTYTYVLKAC----------VVSELSICPLRKGKEIHA--HILRHGY----EGHVHVM 217

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF--QSR 235
             ++  Y   G ++ AS +F  MP +N+ +W+AMI  YA+N     A++L  +M      
Sbjct: 218 TTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACD 277

Query: 236 FMPNETTCTSILTSCEGM--LEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
            +PN  T  S+L +C  +  LE+  L HA  +R G +    +       Y     G   +
Sbjct: 278 TVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMY-----GRCGE 332

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
           +++ +  F+ ++ +DV+SW ++I  Y  HG G +  ++F  M+  G  P  ITF+ VL  
Sbjct: 333 ISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCA 392

Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
           CSHAGLVE+ +  F  M   Y   PR EHY+C+ DIL RA ++ EA+ ++  M   +   
Sbjct: 393 CSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNM-DFKPGP 451

Query: 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            V G+LLG+CR+H +V +A+     L EL+P ++G YVL ++++A    W++  +VRK++
Sbjct: 452 TVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQL 511

Query: 473 ERR-VKKVASFSQIEVKGKDHTLLA 496
           E R ++K+ S S IEVK K ++L++
Sbjct: 512 ESRGLQKIPSCSWIEVKRKIYSLVS 536


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 227/462 (49%), Gaps = 43/462 (9%)

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVS 124
           Y   G +  +  +F      NV+ WT +I+ +            + +M   P++  N  +
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQ-PNAFT 123

Query: 125 WTTVVLGCA-------HNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKD 173
            ++++  C        H+  I K  + S   + TGL     R      A++ F  MP + 
Sbjct: 124 LSSLLKACTLHPARAVHSHAI-KFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERS 182

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN---- 229
           +V++ AM+T Y   G + +A  LF  M  ++V  WN MID YA++G    A+        
Sbjct: 183 LVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMM 242

Query: 230 ---LMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHAL----AIRLGFEQETSLT-YKC 278
                   +  PNE T  ++L+SC   G LE     H+      I++     T+L    C
Sbjct: 243 MMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYC 302

Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
            C            +  AR  F+ +E KDVV+W +MI+ Y  HG   +  +LF  M   G
Sbjct: 303 KCG----------SLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIG 352

Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
            KP +ITFV VL+ C+HAGLV KG + F+ M   YG +P+ EHY C+ ++L RAG+++EA
Sbjct: 353 VKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEA 412

Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
             +V  M   E D V+ G LL ACR+H +V + + I E L+    +SSG YVL +N++AA
Sbjct: 413 YDLVRSMEV-EPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAA 471

Query: 459 RGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPMR 499
              W   A+VR  M+   V+K    S IEVK + H  +A  R
Sbjct: 472 ARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDR 513



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 36/248 (14%)

Query: 31  MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
           ++  + R  D+  A+ LF AMPE  R++V+ +AM+  Y K G + EAR +F+ +   +V 
Sbjct: 158 LVDAYARGGDVASAQKLFDAMPE--RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVV 215

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKL---------KNVVSWTTVVLGCAHNGLIAKL 141
            W  +I GY +    +E    F +M + +          N ++   V+  C   G +  L
Sbjct: 216 CWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSC---GQVGAL 272

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
           E   W    + +E N +    R               A++  Y   G++  A ++F++M 
Sbjct: 273 ECGKWVH--SYVENNGIKVNVR------------VGTALVDMYCKCGSLEDARKVFDVME 318

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261
            ++V  WN+MI  Y  +G    A++L + M      P++ T  ++LT+C        AHA
Sbjct: 319 GKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTAC--------AHA 370

Query: 262 LAIRLGFE 269
             +  G+E
Sbjct: 371 GLVSKGWE 378



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 137/342 (40%), Gaps = 58/342 (16%)

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
           +Y   G++  +  LF+  P  NV+ W  +I+ +A       A+   + M      PN  T
Sbjct: 64  SYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFT 123

Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQE------------------------------- 271
            +S+L +C  +      H+ AI+ G                                   
Sbjct: 124 LSSLLKACT-LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERS 182

Query: 272 -TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
             S T   TC      +     +  AR+ FE +  KDVV W  MI  Y+ HG   +    
Sbjct: 183 LVSYTAMLTC------YAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVF 236

Query: 331 FARMLKSG-------TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
           F +M+           +P+EIT V VLS C   G +E G+   + +    G K      +
Sbjct: 237 FRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENN-GIKVNVRVGT 295

Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG--DVRMADYIGERLIEL 441
            L D+  + G +++A +V   M    +D V   +++    +HG  D  +  +     I +
Sbjct: 296 ALVDMYCKCGSLEDARKVFDVMEG--KDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGV 353

Query: 442 QPSS-SGAYVLSANVHA---ARGEWDEFAQVRK--KMERRVK 477
           +PS  +   VL+A  HA   ++G W+ F  ++    ME +V+
Sbjct: 354 KPSDITFVAVLTACAHAGLVSKG-WEVFDSMKDGYGMEPKVE 394



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 75/294 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G V  A KLFD M +   VS  +M+T + ++  LP+A  LF  M    +++V  + MIDG
Sbjct: 166 GDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGM--GMKDVVCWNVMIDG 223

Query: 68  YVKAGRVDEARKVF-----------------DEI-------------------------- 84
           Y + G  +EA   F                 +EI                          
Sbjct: 224 YAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVE 283

Query: 85  ---YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL 141
               + NV   T+L+  Y K   +++ R++FD M  + K+VV+W ++++G   +G   + 
Sbjct: 284 NNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVM--EGKDVVAWNSMIMGYGIHGFSDEA 341

Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
             +     C G++ + +T      FV           A++TA   AG +++  E+F+ M 
Sbjct: 342 LQLFHEMCCIGVKPSDIT------FV-----------AVLTACAHAGLVSKGWEVFDSMK 384

Query: 202 -----QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
                +  V  +  M++   R G    A  L+  M      P+     ++L +C
Sbjct: 385 DGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSM---EVEPDPVLWGTLLWAC 435


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 224/449 (49%), Gaps = 42/449 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +++++  +   G VD +R++F E  + +V SWT+LI+G  +  +  E    F  M     
Sbjct: 141 QNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGV 200

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK--DIVAWN 178
            V   T V + CA     A +    W             +    ++V+      D+   +
Sbjct: 201 EVDEVTVVSVLCA-----AAMLRDVW-----------FGRWVHGFYVESGRVIWDVYVGS 244

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y   G    A ++FN MP RN+ +W A+I  Y +      A+K+   M      P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 239 NETTCTSILTSCE--GMLEN---MLAHALAIRLGFEQE-----TSLTYKCTCHYVFWDWG 288
           N++T TS LT+C   G L+    +  +    +LG   +       +  KC C        
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGC-------- 356

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V+ A L FE+L AKDV  WTAMI   +  G       LF++M++S  +P+ +TF+G
Sbjct: 357 ----VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLG 412

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS C+H GLV++G + F LM   Y  +P  +HY C+ D+L RAG+++EA++ +  M P 
Sbjct: 413 VLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM-PM 471

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E    V GAL   C +H    + ++IG  LI+LQP  SG Y+L AN+++   +W+  A V
Sbjct: 472 EPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANV 531

Query: 469 RKKME-RRVKKVASFSQIEVKGKDHTLLA 496
           R+ M+ + V K  + S IEV G  H  +A
Sbjct: 532 RRLMKGKGVDKSPACSWIEVNGVIHEFIA 560



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 34/260 (13%)

Query: 5   GC--TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-- 56
           GC   G+  EA + F EM     + D V+  S++       D+     +     ES R  
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 57  -NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            ++   SA++D Y K G  D+A KVF+E+   N+ SW +LI+GY +  +  E  ++F  M
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEM 297

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
                       ++ G   N    +  V S  T C  L      +   EY     ++  +
Sbjct: 298 ------------IIEGIEPN----QSTVTSALTACAQLGSLDQGRWLHEYV----DRSKL 337

Query: 176 AWN-----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             N     A++  Y   G + +A  +F  +P ++V+ W AMI+  A  G   +++ L + 
Sbjct: 338 GLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQ 397

Query: 231 MFQSRFMPNETTCTSILTSC 250
           M +SR  PN  T   +L++C
Sbjct: 398 MIRSRVQPNGVTFLGVLSAC 417



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 125/300 (41%), Gaps = 29/300 (9%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D    N++++A+   G +  +  LF    +++V +W A+I+   RNG    A++    M 
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196

Query: 233 QSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLG------FEQETSLTYKCTCHY 282
            S    +E T  S+L +   ML ++      H   +  G      +     +     C Y
Sbjct: 197 SSGVEVDEVTVVSVLCA-AAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                      + A   F  +  +++VSW A+I  Y       +  ++F  M+  G +P+
Sbjct: 256 ----------CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPN 305

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRA-YGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           + T    L+ C+  G +++GR     + R+  G   +    + L D+  + G V EA+ V
Sbjct: 306 QSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLG--TALVDMYSKCGCVDEALLV 363

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY---VLSANVHAA 458
             K+P   +D     A++    + GD   +  +  ++I  +   +G     VLSA  H  
Sbjct: 364 FEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 256/517 (49%), Gaps = 50/517 (9%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI- 65
             ++A  LF E+ + D VS  S+I  + R     KA  LF  M ES  Q + V  S ++ 
Sbjct: 265 STEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLA 324

Query: 66  ----DGYVKAGRVDEA----RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               D  V+ G+   A    R   D +  GN     +LIS Y K +QVD    +F RM L
Sbjct: 325 GLGNDAKVRGGKTFHAAIVRRNFGDSVLIGN-----ALISMYAKCKQVDIAATVF-RM-L 377

Query: 118 KLKNVVSWTTVVLGCAHNGLIAK-LEV-----------ISWTTMCTGLERNAMTKLAREY 165
             ++  SW+++V+     GL  K LE+             + T       ++ ++L R  
Sbjct: 378 HQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLR 437

Query: 166 FVQ---------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             Q         +  ++    NA+I+ Y   GN   A ++F ++  ++V TW+A+I  Y+
Sbjct: 438 LGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYS 497

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LEN-MLAHALAIRLGFEQETS 273
             G    A+ L + M      PN  T  S+++SC  +  LE+  L H+    +G E + S
Sbjct: 498 HLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLS 557

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +   CT     +    QL +  AR  F+ +  +DVV+W  MI  Y  HG   Q  +LF+ 
Sbjct: 558 I---CTALVDMYMKCGQLGI--ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSM 612

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M +   KP+ +TF+ +LS C HAGLV+KGR+ F  M   Y  +P  +HY+C+ D+L ++G
Sbjct: 613 MERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSG 671

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EA  VVS MP  E D  + G LLGAC++H +  M   + ++     P + G Y+L +
Sbjct: 672 HLQEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMS 730

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           N + +  +W+E  ++R  M+   V+K   +S I++ G
Sbjct: 731 NSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 200/475 (42%), Gaps = 78/475 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----------PESQR- 56
           G V++A +LFDEM + D V+  ++I+  + N    +  +    M          P S+  
Sbjct: 159 GSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTM 218

Query: 57  -------NIVAE-----------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
                   ++ E                       S++   Y K    ++AR +F E+ E
Sbjct: 219 ESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPE 278

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++ SWTSLI  Y +A   ++   LF                 LG   +GL     VIS 
Sbjct: 279 KDLVSWTSLIGAYCRAGHAEKAVELF-----------------LGMEESGLQPDEVVIS- 320

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKD----IVAWNAMITAYVDAGNMAQASELFNLMPQ 202
             +  GL  +A  +  + +   +  ++    ++  NA+I+ Y     +  A+ +F ++ Q
Sbjct: 321 -CLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR----FMPNETTCTSILTSCEGMLE-N 256
           R+  +W++M+  Y + G +   ++L   M F+ +    +  N         S  G L   
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLG 439

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             AH  +I+    + +S+       Y     G   + + AR  F  ++ KDVV+W+A+I 
Sbjct: 440 QSAHCYSIKHLAGENSSVANALISMY-----GRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           +YS+ GH      L+ +ML  G KP+  T V V+S C++   +E G    + + +  G +
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV-KDVGLE 553

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
                 + L D+  + GQ+  A ++   M   ERD V    ++    +HG+   A
Sbjct: 554 CDLSICTALVDMYMKCGQLGIARKMFDSML--ERDVVTWNVMISGYGMHGEAIQA 606



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 17/242 (7%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-- 235
           ++++  Y   G++  A  LF+ MP+R+V  W A+I     NG  G  +  L  M +S   
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208

Query: 236 --FMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
               PN  T  S L +C G+L  +      H   ++ G     S+       Y   D   
Sbjct: 209 GGARPNSRTMESGLEAC-GVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCD--- 264

Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
                 AR+ F  L  KD+VSWT++I AY   GH  +   LF  M +SG +PDE+    +
Sbjct: 265 --STEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCL 322

Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           L+   +   V +G KTF+       F       + L  +  +  QV  A  V   +  H+
Sbjct: 323 LAGLGNDAKV-RGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRML--HQ 379

Query: 410 RD 411
           RD
Sbjct: 380 RD 381



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 120/314 (38%), Gaps = 77/314 (24%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++   S+++  Y + G V +A ++FDE+ E +V +WT++ISG     Q  EG    
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYL 199

Query: 113 DRM------------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL- 153
            RM                   L+   V+   +V  G   +G   K  V    ++ + L 
Sbjct: 200 VRMVRSAGDGGARPNSRTMESGLEACGVLGELSV--GTCLHGFGVKAGVGHCPSVVSSLF 257

Query: 154 ---ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
               +   T+ AR  F ++P KD+V+W ++I AY  AG+  +A ELF  M          
Sbjct: 258 SMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--------- 308

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLG 267
                                 +S   P+E   + +L        +      HA  +R  
Sbjct: 309 ----------------------ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346

Query: 268 FEQET-------SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
           F           S+  KC           Q+D+  A   F  L  +D  SW++M++AY  
Sbjct: 347 FGDSVLIGNALISMYAKCK----------QVDI--AATVFRMLHQRDTDSWSSMVVAYCK 394

Query: 321 HGHGFQVFRLFARM 334
            G   +   L+  M
Sbjct: 395 AGLDLKCLELYREM 408



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P  D  A   +++AY  AG  A A+  F   P  + + WN+++    R     + +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLG-FEQETSLTYKCTCHYVFW 285
            M  S   P+  T   + ++    G L      HA ++R G  E + S+    +  Y++ 
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKP 341
             G    V  A   F+ +  +DVV+WTA+I     +G   +      RM++S    G +P
Sbjct: 157 RCG---SVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKE 397
           +  T    L  C   G +  G          +G K    H     S L  +  +    ++
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCL-----HGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 398 AMRVVSKMPPHERDHVVLGALLGA-CRL-HGDVRMADYIGERLIELQP 443
           A  +  ++P  E+D V   +L+GA CR  H +  +  ++G     LQP
Sbjct: 269 ARILFPELP--EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    SA++D Y    +V   R+VFD +++  +  W ++I+GY +     E   LF  M 
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 117 LK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK------------- 160
                L N  +   VV  C  +G  ++ E I    +  GL+R+   +             
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 161 -LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            +A   F +M ++D+V WN MIT YV + +   A  L + M           ++R    G
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN---------LERKVSKG 507

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS--- 273
               ++K           PN  T  +IL SC     + +    HA AI+     + +   
Sbjct: 508 ASRVSLK-----------PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 556

Query: 274 ----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
               +  KC C            +  +R  F+++  K+V++W  +I+AY  HG+G +   
Sbjct: 557 ALVDMYAKCGC------------LQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           L   M+  G KP+E+TF+ V + CSH+G+V++G + F +M   YG +P ++HY+C+ D+L
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGA---LLGACRLHGDVRMADYIGERLIELQPSSS 446
            RAG++KEA ++++ MP   RD    GA   LLGA R+H ++ + +   + LI+L+P+ +
Sbjct: 665 GRAGRIKEAYQLMNMMP---RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 721

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             YVL AN++++ G WD+  +VR+ M E+ V+K    S IE   + H  +A
Sbjct: 722 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVA 772



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 145/376 (38%), Gaps = 42/376 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + +++ Y K G      KVFD I E N  SW SLIS      + +     F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM- 190

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL---ERNAMTKLAREYFVQMPNKD 173
             L   V  ++  L             +S  T C+ L   E   M K    Y ++    +
Sbjct: 191 --LDENVEPSSFTL-------------VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               N ++  Y   G +A +  L      R++ TWN ++    +N     A++ L  M  
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT------YKCTCHYVF 284
               P+E T +S+L +C   E +      HA A++ G   E S          C C  V 
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE 343
                     S R  F+ +  + +  W AMI  YS + H  +   LF  M +S G   + 
Sbjct: 356 ----------SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            T  GV+  C  +G   +       + +  G        + L D+  R G++  AMR+  
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 404 KMPPHERDHVVLGALL 419
           KM   +RD V    ++
Sbjct: 465 KM--EDRDLVTWNTMI 478



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 15/258 (5%)

Query: 11  KEATKLFDEMSQP-----DPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESA 63
           KEA  LF  M +      +  + A ++   +R+    + EA+  F       R+   ++ 
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++D Y + G++D A ++F ++ + ++ +W ++I+GY  +   ++   L  +M   L+  V
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ-NLERKV 504

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
           S     +    N     + +++    C  L   A  K    Y ++     D+   +A++ 
Sbjct: 505 SKGASRVSLKPN----SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  + ++F+ +PQ+NV TWN +I  Y  +G    A+ LL +M      PNE T
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 243 CTSILTSC--EGMLENML 258
             S+  +C   GM++  L
Sbjct: 621 FISVFAACSHSGMVDEGL 638



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/468 (20%), Positives = 192/468 (41%), Gaps = 64/468 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G      K+FD +S+ + VS  S+I+          A   FR M +   N+   S  +  
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD--ENVEPSSFTLVS 204

Query: 68  YVKAGR---VDEARKVFDEIY-------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            V A     + E   +  +++       E N +   +L++ Y K  ++   + L      
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS--F 262

Query: 118 KLKNVVSWTTVVLG-CAHNGLIAKLEVI----------------SWTTMCTGLERNAMTK 160
             +++V+W TV+   C +  L+  LE +                S    C+ LE     K
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 161 LAREYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
               Y ++  + D  ++  +A++  Y +   +     +F+ M  R +  WNAMI  Y++N
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 219 GPEGAAMKLLNLMFQSR-FMPNETTCTSILTSC--EGMLENMLA-HALAIRLGFEQETSL 274
             +  A+ L   M +S   + N TT   ++ +C   G      A H   ++ G +++  +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             + T   ++   G ++D+  A   F ++E +D+V+W  MI  Y    H      L  +M
Sbjct: 443 --QNTLMDMYSRLG-KIDI--AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 335 L-----------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH-- 381
                       +   KP+ IT + +L  C+    + KG++       AY  K       
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-----HAYAIKNNLATDV 552

Query: 382 --YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
              S L D+  + G ++ + +V  ++P  +++ +    ++ A  +HG+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGN 598



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 74/249 (29%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT--VFLRNHD------------------------- 40
           GK+  A ++F +M   D V+  +MIT  VF  +H+                         
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 41  LPKAEALFRAMPES---------------------QRNIVAESAMIDGYVKAGRVDEARK 79
            P +  L   +P                         ++   SA++D Y K G +  +RK
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL 137
           VFD+I + NV +W  +I  Y       E   L   M ++    N V++ +V   C+H+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----AGNMAQA 193
           + +           GL         R ++V  P+  +   +      VD    AG + +A
Sbjct: 634 VDE-----------GL---------RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673

Query: 194 SELFNLMPQ 202
            +L N+MP+
Sbjct: 674 YQLMNMMPR 682


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 221/423 (52%), Gaps = 56/423 (13%)

Query: 109 RRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK-LEVIS--WTTMCT-------------- 151
           R++FD MP K  +VVSW T+VLGCA +G   + L ++   W   C               
Sbjct: 127 RKVFDEMPEK--DVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFA 184

Query: 152 -------GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
                  G+E +      R  F    + D+   +++I  Y +      + ++F+ +P R+
Sbjct: 185 EGADVRRGMELHGFA--TRNGF----HDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HA 261
              WN+M+   A+NG    A+ L   M  S   P   T +S++ +C  +   +L    HA
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 262 LAIRLGFEQETSLTYK-----CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             IR GF+    ++       C C           +V+ AR  F+R+++ D+VSWTAMI+
Sbjct: 299 YVIRGGFDGNVFISSSLIDMYCKCG----------NVSIARRIFDRIQSPDIVSWTAMIM 348

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
            ++ HG   +   LF RM     KP+ ITF+ VL+ CSHAGLV+KG K FN MS  YG  
Sbjct: 349 GHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIV 408

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVS--KMPPHERDHVVLGALLGACRLHGDVRMADYI 434
           P  EH++ LAD L R G+++EA   +S  K+ P      V   LL AC++H +  +A+ +
Sbjct: 409 PSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTAS---VWSTLLRACKVHKNTVLAEEV 465

Query: 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHT 493
            +++ +L+P S G++++ +N +++ G W+E A +RK M ++ ++K  + S IEVK K H 
Sbjct: 466 AKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHV 525

Query: 494 LLA 496
            +A
Sbjct: 526 FVA 528



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 31/263 (11%)

Query: 1   TSQFGC--TGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEAL--FRAMP 52
           T   GC  +G+  EA  L  EM     +PD  + +S++ +F    D+ +   L  F    
Sbjct: 143 TLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRN 202

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
               ++   S++ID Y    R D + KVFD +   +   W S+++G  +   VDE   LF
Sbjct: 203 GFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLF 262

Query: 113 DRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM---CTGLERNAMTKLAREYFVQM 169
            RM                  H+G+  K   ++++++   C  L    + K    Y ++ 
Sbjct: 263 RRM-----------------LHSGI--KPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG 303

Query: 170 P-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228
             + ++   +++I  Y   GN++ A  +F+ +   ++ +W AMI  +A +GP   A+ L 
Sbjct: 304 GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLF 363

Query: 229 NLMFQSRFMPNETTCTSILTSCE 251
           + M      PN  T  ++LT+C 
Sbjct: 364 DRMELGNLKPNHITFLAVLTACS 386



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 5   GC--TGKVKEATKLFDEM----SQPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR 56
           GC   G V EA  LF  M     +P PV+ +S+I     L +  L K    +        
Sbjct: 248 GCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDG 307

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N+   S++ID Y K G V  AR++FD I   ++ SWT++I G+       E   LFDRM 
Sbjct: 308 NVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRME 367

Query: 117 L-KLK-NVVSWTTVVLGCAHNGLIAK 140
           L  LK N +++  V+  C+H GL+ K
Sbjct: 368 LGNLKPNHITFLAVLTACSHAGLVDK 393



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 24/240 (10%)

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA----------HALAIRLG--- 267
           +G     + L  + R       C+S+LTS  G L++  A          HALA+R G   
Sbjct: 32  QGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFA 91

Query: 268 --FEQETSLTYKC-----TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
             F     L   C       H    D G  + + S R  F+ +  KDVVSW  ++L  + 
Sbjct: 92  DRFAANALLNLYCKLPAPPSHSPEMD-GSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAE 150

Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
            G   +   L   M + G KPD  T   VL   +    V +G +     +R  GF     
Sbjct: 151 SGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATR-NGFHDDVF 209

Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
             S L D+     +   +++V   +P   RD ++  ++L  C  +G V  A  +  R++ 
Sbjct: 210 VGSSLIDMYANCTRTDYSVKVFDNLP--VRDAILWNSMLAGCAQNGSVDEALGLFRRMLH 267



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 123/273 (45%), Gaps = 36/273 (13%)

Query: 6   CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESA 63
           CT +   + K+FD +   D +   SM+    +N  + +A  LFR M  S  +   V  S+
Sbjct: 221 CT-RTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSS 279

Query: 64  MIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
           +I        +   +++   +    ++GNV+  +SLI  Y K   V   RR+FDR  ++ 
Sbjct: 280 LIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDR--IQS 337

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNKDIVAWN 178
            ++VSWT +++G A +G  A+  ++ +  M  G L+ N +T L                 
Sbjct: 338 PDIVSWTAMIMGHALHG-PAREALVLFDRMELGNLKPNHITFL----------------- 379

Query: 179 AMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           A++TA   AG + +  + FN M        ++    A+ D   R G    A   ++ M  
Sbjct: 380 AVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGM-- 437

Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
            +  P  +  +++L +C+     +LA  +A ++
Sbjct: 438 -KIKPTASVWSTLLRACKVHKNTVLAEEVAKKI 469


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    SA++D Y    +V   R+VFD +++  +  W ++I+GY +     E   LF  M 
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 117 LK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK------------- 160
                L N  +   VV  C  +G  ++ E I    +  GL+R+   +             
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 161 -LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            +A   F +M ++D+V WN MIT YV + +   A  L + M           ++R    G
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN---------LERKVSKG 507

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS--- 273
               ++K           PN  T  +IL SC     + +    HA AI+     + +   
Sbjct: 508 ASRVSLK-----------PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 556

Query: 274 ----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
               +  KC C            +  +R  F+++  K+V++W  +I+AY  HG+G +   
Sbjct: 557 ALVDMYAKCGC------------LQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           L   M+  G KP+E+TF+ V + CSH+G+V++G + F +M   YG +P ++HY+C+ D+L
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGA---LLGACRLHGDVRMADYIGERLIELQPSSS 446
            RAG++KEA ++++ MP   RD    GA   LLGA R+H ++ + +   + LI+L+P+ +
Sbjct: 665 GRAGRIKEAYQLMNMMP---RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 721

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             YVL AN++++ G WD+  +VR+ M E+ V+K    S IE   + H  +A
Sbjct: 722 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVA 772



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 145/376 (38%), Gaps = 42/376 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + +++ Y K G      KVFD I E N  SW SLIS      + +     F  M 
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM- 190

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL---ERNAMTKLAREYFVQMPNKD 173
             L   V  ++  L             +S  T C+ L   E   M K    Y ++    +
Sbjct: 191 --LDENVEPSSFTL-------------VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               N ++  Y   G +A +  L      R++ TWN ++    +N     A++ L  M  
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT------YKCTCHYVF 284
               P+E T +S+L +C   E +      HA A++ G   E S          C C  V 
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE 343
                     S R  F+ +  + +  W AMI  YS + H  +   LF  M +S G   + 
Sbjct: 356 ----------SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            T  GV+  C  +G   +       + +  G        + L D+  R G++  AMR+  
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 404 KMPPHERDHVVLGALL 419
           KM   +RD V    ++
Sbjct: 465 KM--EDRDLVTWNTMI 478



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 15/258 (5%)

Query: 11  KEATKLFDEMSQP-----DPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESA 63
           KEA  LF  M +      +  + A ++   +R+    + EA+  F       R+   ++ 
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++D Y + G++D A ++F ++ + ++ +W ++I+GY  +   ++   L  +M   L+  V
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ-NLERKV 504

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
           S     +    N     + +++    C  L   A  K    Y ++     D+   +A++ 
Sbjct: 505 SKGASRVSLKPN----SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  + ++F+ +PQ+NV TWN +I  Y  +G    A+ LL +M      PNE T
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 243 CTSILTSC--EGMLENML 258
             S+  +C   GM++  L
Sbjct: 621 FISVFAACSHSGMVDEGL 638



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/468 (20%), Positives = 192/468 (41%), Gaps = 64/468 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G      K+FD +S+ + VS  S+I+          A   FR M +   N+   S  +  
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD--ENVEPSSFTLVS 204

Query: 68  YVKAGR---VDEARKVFDEIY-------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            V A     + E   +  +++       E N +   +L++ Y K  ++   + L      
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS--F 262

Query: 118 KLKNVVSWTTVVLG-CAHNGLIAKLEVI----------------SWTTMCTGLERNAMTK 160
             +++V+W TV+   C +  L+  LE +                S    C+ LE     K
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 161 LAREYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
               Y ++  + D  ++  +A++  Y +   +     +F+ M  R +  WNAMI  Y++N
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 219 GPEGAAMKLLNLMFQSR-FMPNETTCTSILTSC--EGMLENMLA-HALAIRLGFEQETSL 274
             +  A+ L   M +S   + N TT   ++ +C   G      A H   ++ G +++  +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             + T   ++   G ++D+  A   F ++E +D+V+W  MI  Y    H      L  +M
Sbjct: 443 --QNTLMDMYSRLG-KIDI--AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 335 L-----------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH-- 381
                       +   KP+ IT + +L  C+    + KG++       AY  K       
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-----HAYAIKNNLATDV 552

Query: 382 --YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
              S L D+  + G ++ + +V  ++P  +++ +    ++ A  +HG+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGN 598



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 74/249 (29%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT--VFLRNHD------------------------- 40
           GK+  A ++F +M   D V+  +MIT  VF  +H+                         
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 41  LPKAEALFRAMPES---------------------QRNIVAESAMIDGYVKAGRVDEARK 79
            P +  L   +P                         ++   SA++D Y K G +  +RK
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL 137
           VFD+I + NV +W  +I  Y       E   L   M ++    N V++ +V   C+H+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----AGNMAQA 193
           + +           GL         R ++V  P+  +   +      VD    AG + +A
Sbjct: 634 VDE-----------GL---------RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673

Query: 194 SELFNLMPQ 202
            +L N+MP+
Sbjct: 674 YQLMNMMPR 682


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 235/476 (49%), Gaps = 66/476 (13%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN--VYSWTSLISGYFKARQVDEGRRLFDR 114
           N    SA++D Y    RV  AR+VFD +  G+  +  W +++ GY +A   +E   LF R
Sbjct: 306 NSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFAR 365

Query: 115 MPLKLKNVVSWTT---VVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKL----- 161
           M  +   V S TT   V+  CA +   A  E +    +  G+      +NA+  L     
Sbjct: 366 MEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLG 425

Query: 162 ----AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
               AR  F  +  +D+V+WN +IT  V  G++  A +L   M Q+  +T     D    
Sbjct: 426 DMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFT-----DATTE 480

Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA--------HALAIRLGFE 269
           +G  G          +   +PN  T  ++L  C      MLA        H  A+R   +
Sbjct: 481 DGIAGTD--------EEPVVPNNVTLMTLLPGCA-----MLAAPAKGKEIHGYAMRHALD 527

Query: 270 QETS-------LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            + +       +  KC C            +  +R  F+RL  ++V++W  +I+AY  HG
Sbjct: 528 SDIAVGSALVDMYAKCGC------------LALSRAVFDRLPKRNVITWNVLIMAYGMHG 575

Query: 323 HGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
            G +   LF RM+ S   KP+E+TF+  L+ CSH+G+V++G + F+ M R +G +P  + 
Sbjct: 576 LGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDL 635

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           ++C  DIL RAG++ EA  +++ M P E+      + LGACRLH +V + +   ERL +L
Sbjct: 636 HACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQL 695

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
           +P  +  YVL  N+++A G W++ ++VR +M +R V K    S IE+ G  H  +A
Sbjct: 696 EPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMA 751



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 12/242 (4%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           NA++TAY   G++  A  LFN MP R+  T+N++I           A+  L  M      
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHP 159

Query: 238 PNETTCTSILTSCEGMLENML----AHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
            +  T  S+L +C  + E++     AHA A++ GF              ++   G    V
Sbjct: 160 LSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL---V 216

Query: 294 NSARLAFERLEAKD-----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           + A++ F  ++  D     VV+W  M+      G   +   +   M+  G +PD ITF  
Sbjct: 217 DDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFAS 276

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
            L  CS   ++  GR+    + +       +   S L D+     +V  A RV   +P  
Sbjct: 277 ALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGG 336

Query: 409 ER 410
            R
Sbjct: 337 HR 338


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 153/534 (28%), Positives = 261/534 (48%), Gaps = 45/534 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE--SAMI 65
           G V+EA  +F +M   D VS  +++   L N    +A  LF     S   +     S +I
Sbjct: 250 GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVI 309

Query: 66  DGYVKAGRVDEARKVFDEIYEGNVYS----WTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                  ++  AR++   + +   +S     T+++  Y K  ++D+   +F  MP   +N
Sbjct: 310 KLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGS-QN 368

Query: 122 VVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTG----LERNAMTKLAR 163
           VVSWT ++ GC  N  I               K    +++T+ T     L      ++ +
Sbjct: 369 VVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIK 428

Query: 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
             +   P+       A++ +Y   GN  +A  +F ++  ++V  W+AM+  Y++ G    
Sbjct: 429 TNYQHAPS----VGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDG 484

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE----GMLENMLAHALAIRLGFEQETSLTYKCT 279
           A  +   M      PNE T +S + +C     G+ +    HA++I+  ++        C 
Sbjct: 485 ATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAI-----CV 539

Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
              +   +  +  ++SAR+ FER   +D+VSW +MI  Y+ HG+  +    F +M   G 
Sbjct: 540 GSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGI 599

Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
           + D  TF+ V+  C+HAGLV++G++ F+ M   +   P  EHYSC+ D+  RAG++ E M
Sbjct: 600 EMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETM 659

Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
            ++  M P     +V   LLGACR+H +V +     ++L+ L+P  S  YVL +N++AA 
Sbjct: 660 NLIEGM-PFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAA 718

Query: 460 GEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLK 507
           G W E  +VRK M+ ++VKK A  S I++K K H+ +A     P+ E  Y  LK
Sbjct: 719 GRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLK 772



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 136/299 (45%), Gaps = 34/299 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +A++D Y+K G V++ R VF+ + + NV +WTSL++GY + R   +   LF RM  +   
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN----KDIV 175
            N  ++T+V+   A  G +                      L R    Q         + 
Sbjct: 199 PNPFTFTSVLSAVASQGAV---------------------DLGRRVHAQSVKFGCRSTVF 237

Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
             N++I  Y   G + +A  +F  M  R++ +WN ++     N  +  A++L +    S 
Sbjct: 238 VCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASM 297

Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              +++T ++++  C  + +  LA   H+  ++ GF  + ++    T     +    +LD
Sbjct: 298 AKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM---TAIMDAYSKCGELD 354

Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
            ++  +      +++VVSWTAMI     +        LF+RM +   KP+E T+  VL+
Sbjct: 355 -DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLT 412



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 131/285 (45%), Gaps = 15/285 (5%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
            A++  Y+  G +     +F  MP+RNV TW +++  Y +       M L   M      
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 238 PNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHY-VFWDWGFQLDV 293
           PN  T TS+L++   +G ++     HA +++ G     S  + C     ++   G    V
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCR---STVFVCNSLINMYSKCGL---V 252

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
             A+  F ++E +D+VSW  ++     + H  +  +LF     S  K  + T+  V+  C
Sbjct: 253 EEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLC 312

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           ++   +   R+  + + + +GF       + + D   + G++ +A  +   MP   ++ V
Sbjct: 313 ANLKQLALARQLHSCVLK-HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPG-SQNVV 370

Query: 414 VLGALLGACRLHGDVRMADYIGERLIE--LQPSS-SGAYVLSANV 455
              A++G C  + D+ +A  +  R+ E  ++P+  + + VL+A++
Sbjct: 371 SWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASI 415


>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Brachypodium distachyon]
          Length = 656

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 221/451 (49%), Gaps = 30/451 (6%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A A+F  MP+  +N V  +AM++GYVKAG +D A ++F+ I E +V SW  +I GY +A 
Sbjct: 198 ARAVFEWMPD--KNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRAD 255

Query: 104 QVDEGRRLFDRMPLKLK---NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160
            + E  R +  M  ++    NV         CA +  + + + +    +  G + +   +
Sbjct: 256 CISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDTHLFVQ 315

Query: 161 --------------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
                         LA+  F       I +WNA +   V    M +A +LF+ MP+++  
Sbjct: 316 ATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTI 375

Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLEN-MLAHALA 263
           +W+ ++  Y ++G    A++L  LM  +   PN  T  S L++    G LE     H   
Sbjct: 376 SWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANSGTLEQGRWIHDYI 435

Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMILAYSNH 321
           I        +L       Y          V  A L F  ++ K   +  W AMI + + H
Sbjct: 436 ISKSIHLTDNLIAGLIDMYAKCG-----SVADAVLLFNHVKEKLSSLSPWNAMICSLAIH 490

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           GH      LF+++  S  KP+ IT++GVL+ C HAG+V +G+  F  M R YG  P  +H
Sbjct: 491 GHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESMRREYGIPPTIKH 550

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y C+ D+L RAG ++EA R++  MP  + D V+ G++L A R HG+V + +   E L +L
Sbjct: 551 YGCMVDLLGRAGYLEEAERLIKTMPV-KSDVVIWGSILAAARSHGNVALGEKAAEELAKL 609

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472
            P+   + V   N++A  G W+  + VRK++
Sbjct: 610 DPNHGASKVALCNIYADAGRWNNVSVVRKEL 640



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 209/471 (44%), Gaps = 54/471 (11%)

Query: 38  NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLIS 97
           +H    A  LF  +P + R+  A + ++    + G +D A+++  E+ + +  S+T++++
Sbjct: 58  SHAPALAHHLFDEIPLALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLT 117

Query: 98  GYFKARQVDEGRRLFDRM--------PLKLKNVVS-----WTTVVLGCAHNGLIAK-LE- 142
              +A   ++   +F  M         + L  V++     W    LG  H   + + L+ 
Sbjct: 118 ALARAGHAEDAMAVFRGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDG 177

Query: 143 -VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
            VI  T +       A    AR  F  MP+K+ V WNAM+  YV AG +  A+E+F  +P
Sbjct: 178 FVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIP 237

Query: 202 QRNVWTWNAMIDRYARNGPEGAAMK-LLNLMFQSRFMPNETTCTSILTSC---EGMLENM 257
           +R+V +W  MID Y R      A++  + +M +     N         +C     +LE  
Sbjct: 238 ERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQ 297

Query: 258 LAHALAIRLGFE-----QETSLTYKCTC----------------HYVFWDWGFQLDV--- 293
             H + ++ GF+     Q T + +  +C                H   W+  F   +   
Sbjct: 298 QLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWN-AFMAGIVRK 356

Query: 294 ---NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
              + AR  F+ +  KD +SW+ ++  Y   GH     +LF  ML +G KP+ IT    L
Sbjct: 357 NLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTL 416

Query: 351 SDCSHAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
           S  +++G +E+GR   + ++S++          + L D+  + G V +A+ + + +    
Sbjct: 417 SAVANSGTLEQGRWIHDYIISKSIHLTDNL--IAGLIDMYAKCGSVADAVLLFNHVKEKL 474

Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERL--IELQPSS-SGAYVLSANVHA 457
                  A++ +  +HG   M+  +  +L    ++P+S +   VL+A  HA
Sbjct: 475 SSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHA 525



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 26/229 (11%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDG 67
           + EA +LFD M + D +S +++++ ++++     A  LF  M  +  + N +  ++ +  
Sbjct: 359 MHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSA 418

Query: 68  YVKAGRVDEARKVFDEIYEGNVYSWTSLISG----YFKARQVDEGRRLFDRMPLKLKNVV 123
              +G +++ R + D I   +++   +LI+G    Y K   V +   LF+ +  KL ++ 
Sbjct: 419 VANSGTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLS 478

Query: 124 SWTTVVLGCAHNG-------LIAKLE-------VISWTTMCTGLERNAMTKLAREYFVQM 169
            W  ++   A +G       L ++L+        I++  +        M    + +F  M
Sbjct: 479 PWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESM 538

Query: 170 PNK-----DIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
             +      I  +  M+     AG + +A  L   MP + +V  W +++
Sbjct: 539 RREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSDVVIWGSIL 587


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 252/534 (47%), Gaps = 72/534 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
           G ++ A  +FDEM   D V+  +M++ +  N     A  LFR M                
Sbjct: 17  GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVL 76

Query: 52  -------------PESQRNIVAE----------SAMIDGYVKAGR---VDEARKVFDEIY 85
                        P S   +             +A+I+ Y        V+E+RK+FD + 
Sbjct: 77  TACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALG 136

Query: 86  EG-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
            G    SWTS+++GY +  Q   G +LF  M      +  +T     C+    IA     
Sbjct: 137 SGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFT-----CS----IALHACA 187

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
           S   +C G + + +    R+ F    N ++   N++I  Y    N+  A  LF+ +P+RN
Sbjct: 188 SIANLCVGQQLHVLC--LRKAF----NANLTVANSLIDMYCSCANLLDARRLFDEIPERN 241

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHA 261
           + TWN MI  Y++       +  L L+ +    PN  T TSI ++C G+         H 
Sbjct: 242 LVTWNTMIAWYSQCNH----LMALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHG 297

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
            A+R  + ++  +     C+ +   +     + +A+  F  ++ KD +SWT+MI  Y  +
Sbjct: 298 AALRRNYGKDLQM-----CNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMN 352

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G+  +  +LF  M+ +G  PD + F+G++  C+H GLV++G   F  M+  Y  +P  E 
Sbjct: 353 GYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEI 412

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y C+ ++L RAG+++EA  ++ +M P   D  V GALLGAC++H +V +      ++IE+
Sbjct: 413 YGCVTNLLARAGRLREAFDLIHRM-PFAPDETVWGALLGACKMHKNVELGRLAARKIIEI 471

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTL 494
            P  +  YVL AN++AA  +W E+A  R+ +     +K A  S I+V  K ++ 
Sbjct: 472 NPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIYSF 525



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 11/246 (4%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I +    G +  A  +F+ MP R+V  W AM+  YA NG    A+ L   M  +   PN
Sbjct: 9   LIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPN 68

Query: 240 ETTCTSILTSC-----EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           E T +S+LT+C     +G  E    HA+A+R G +    +       Y   + G  + V 
Sbjct: 69  EFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEG--VGVE 126

Query: 295 SARLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
            +R  F+ L   +   SWT+M+  YS  G      +LF  M++ G +    T    L  C
Sbjct: 127 ESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHAC 186

Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
           +    +  G++   L  R   F       + L D+      + +A R+  ++P  ER+ V
Sbjct: 187 ASIANLCVGQQLHVLCLRK-AFNANLTVANSLIDMYCSCANLLDARRLFDEIP--ERNLV 243

Query: 414 VLGALL 419
               ++
Sbjct: 244 TWNTMI 249


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 256/517 (49%), Gaps = 50/517 (9%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI- 65
             ++A  LF E+ + D VS  S+I  + R     KA  LF  M ES  Q + V  S ++ 
Sbjct: 265 STEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLA 324

Query: 66  ----DGYVKAGRVDEA----RKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
               D  V+ G+   A    R   D +  GN     +LIS Y K +QVD    +F RM L
Sbjct: 325 GLGNDAKVRGGKTFHAAIVRRNFGDSVLIGN-----ALISMYAKCKQVDIAATVF-RM-L 377

Query: 118 KLKNVVSWTTVVLGCAHNGLIAK-LEV-----------ISWTTMCTGLERNAMTKLAREY 165
             ++  SW+++V+     GL  K LE+             + T       ++ ++L R  
Sbjct: 378 HQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLR 437

Query: 166 FVQ---------MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
             Q         +  ++    NA+I+ Y   GN   A ++F ++  ++V TW+A+I  Y+
Sbjct: 438 LGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYS 497

Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LEN-MLAHALAIRLGFEQETS 273
             G    A+ L + M      PN  T  S+++SC  +  LE+  L H+    +G E + S
Sbjct: 498 HLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLS 557

Query: 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
           +   CT     +    QL +  AR  F+ +  +DVV+W  MI  Y  HG   Q  +LF+ 
Sbjct: 558 I---CTALVDMYMKCGQLGI--ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSM 612

Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
           M +   KP+ +TF+ +LS C HAGLV+KGR+ F  M   Y  +P  +HY+C+ D+L ++G
Sbjct: 613 MERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSG 671

Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
            ++EA  VVS MP  E D  + G LLGAC++H +  M   + ++     P + G Y+L +
Sbjct: 672 HLQEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMS 730

Query: 454 NVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKG 489
           N + +  +W+E  ++R  M+   V+K   +S I++ G
Sbjct: 731 NSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG 767



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 200/475 (42%), Gaps = 78/475 (16%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM----------PESQR- 56
           G V++A +LFDEM + D V+  ++I+  + N    +  +    M          P S+  
Sbjct: 159 GSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTM 218

Query: 57  -------NIVAE-----------------------SAMIDGYVKAGRVDEARKVFDEIYE 86
                   ++ E                       S++   Y K    ++AR +F E+ E
Sbjct: 219 ESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPE 278

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
            ++ SWTSLI  Y +A   ++   LF                 LG   +GL     VIS 
Sbjct: 279 KDLVSWTSLIGAYCRAGHAEKAVELF-----------------LGMEESGLQPDEVVIS- 320

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKD----IVAWNAMITAYVDAGNMAQASELFNLMPQ 202
             +  GL  +A  +  + +   +  ++    ++  NA+I+ Y     +  A+ +F ++ Q
Sbjct: 321 -CLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSR----FMPNETTCTSILTSCEGMLE-N 256
           R+  +W++M+  Y + G +   ++L   M F+ +    +  N         S  G L   
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLG 439

Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
             AH  +I+    + +S+       Y     G   + + AR  F  ++ KDVV+W+A+I 
Sbjct: 440 QSAHCYSIKHLAGENSSVANALISMY-----GRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
           +YS+ GH      L+ +ML  G KP+  T V V+S C++   +E G    + + +  G +
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV-KDVGLE 553

Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
                 + L D+  + GQ+  A ++   M   ERD V    ++    +HG+   A
Sbjct: 554 CDLSICTALVDMYMKCGQLGIARKMFDSML--ERDVVTWNVMISGYGMHGEAIQA 606



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
           +  +   ++++  Y   G++  A  LF+ MP+R+V  W A+I     NG  G  +  L  
Sbjct: 142 DGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVR 201

Query: 231 MFQSR----FMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHY 282
           M +S       PN  T  S L +C G+L  +      H   ++ G     S+       Y
Sbjct: 202 MVRSAGDGGARPNSRTMESGLEAC-GVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMY 260

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
              D         AR+ F  L  KD+VSWT++I AY   GH  +   LF  M +SG +PD
Sbjct: 261 TKCD-----STEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPD 315

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFN--LMSRAYG 374
           E+    +L+   +   V +G KTF+  ++ R +G
Sbjct: 316 EVVISCLLAGLGNDAKV-RGGKTFHAAIVRRNFG 348



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 118/307 (38%), Gaps = 63/307 (20%)

Query: 53  ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF 112
           E   ++   S+++  Y + G V +A ++FDE+ E +V +WT++ISG     Q  EG    
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYL 199

Query: 113 DRM------------------PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL- 153
            RM                   L+   V+   +V  G   +G   K  V    ++ + L 
Sbjct: 200 VRMVRSAGDGGARPNSRTMESGLEACGVLGELSV--GTCLHGFGVKAGVGHCPSVVSSLF 257

Query: 154 ---ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
               +   T+ AR  F ++P KD+V+W ++I AY  AG+  +A ELF  M          
Sbjct: 258 SMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--------- 308

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLG 267
                                 +S   P+E   + +L        +      HA  +R  
Sbjct: 309 ----------------------ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           F     +       Y       Q+D+  A   F  L  +D  SW++M++AY   G   + 
Sbjct: 347 FGDSVLIGNALISMYAKCK---QVDI--AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKC 401

Query: 328 FRLFARM 334
             L+  M
Sbjct: 402 LELYREM 408



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P  D  A   +++AY  AG  A A+  F   P  + + WN+++    R     + +    
Sbjct: 39  PRPDFAA--KLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHR 96

Query: 230 LMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLG-FEQETSLTYKCTCHYVFW 285
            M  S   P+  T   + ++    G L      HA ++R G  E + S+    +  Y++ 
Sbjct: 97  RMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYA 156

Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKP 341
             G    V  A   F+ +  +DVV+WTA+I     +G   +      RM++S    G +P
Sbjct: 157 RCG---SVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARP 213

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH----YSCLADILRRAGQVKE 397
           +  T    L  C   G +  G          +G K    H     S L  +  +    ++
Sbjct: 214 NSRTMESGLEACGVLGELSVGTCL-----HGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 398 AMRVVSKMPPHERDHVVLGALLGA-CRL-HGDVRMADYIGERLIELQP 443
           A  +  ++P  E+D V   +L+GA CR  H +  +  ++G     LQP
Sbjct: 269 ARILFPELP--EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 153/528 (28%), Positives = 242/528 (45%), Gaps = 96/528 (18%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           N    +A+ID Y  +G V  AR+VFDEI   ++ SWT +I+ Y +     E    F +M 
Sbjct: 80  NTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR 139

Query: 116 -----------------PLKLKNVVSWTTV---VLG-------------------CAHN- 135
                             L L+N  +  TV   VL                    C  N 
Sbjct: 140 VAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDND 199

Query: 136 ------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------PNK----------- 172
                 G + K +VI W+ M +   ++  ++ A E F QM      PN+           
Sbjct: 200 DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259

Query: 173 ----------------------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
                                 D+   NA++  Y   G + Q+ ELF  +  RN  +WN 
Sbjct: 260 DIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNT 319

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM--LE-NMLAHALAIRLG 267
           +I  Y + G    A+ L + M + +    E T +SIL +C  +  LE  +  H L  +  
Sbjct: 320 IIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI 379

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
           + Q+ ++       Y          +  AR  F+ L+ +D VSW A+I  YS HG G + 
Sbjct: 380 YGQDVAVGNALIDMYAKCG-----SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEA 434

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
            ++F  M ++  KPDE+TFVGVLS CS+ G +++G++ F  M + YG +P  EHY+C+  
Sbjct: 435 IKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVW 494

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
           ++ R+G + +A++ +  + P E   ++  ALLGAC +H DV +     +R++EL+P    
Sbjct: 495 LMGRSGNLDQAVKFIEDI-PFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEA 553

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
           ++VL +N++A    W   A VRK M+R+ VKK    S IE +G  H  
Sbjct: 554 SHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCF 601



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 170/443 (38%), Gaps = 111/443 (25%)

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTT 127
           VFDE+ E N  S+ +LI GY ++ +  E   LF R+               LK +VS   
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
             LG   +G + K+   S T + T L      +    +ARE F ++ +KD+V+W  MI +
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 184 YVDAGNMAQASELFNLMP---------------------------------------QRN 204
           Y +    ++A E F+ M                                        +R+
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 205 VWTWNAMIDRYARNGPE----------------------------GAAMKLLNLMFQSR- 235
           ++    +++ Y R G                              G + K L +  Q R 
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 236 --FMPNETTCTSILTS---CEGMLENMLAHALAIRLGFEQETSLT-------YKCTCHYV 283
              +PN+ T +S+L +    E +  +   H  A++ G   +  ++        KC C   
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGC--- 298

Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
                    +  +   FE L  ++ VSW  +I++Y   G G +   LF+ ML+   +  E
Sbjct: 299 ---------IEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATE 349

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
           +T+  +L  C+    +E G +   L ++   +       + L D+  + G +K+A  +  
Sbjct: 350 VTYSSILRACATLAALELGLQVHCLTAKTI-YGQDVAVGNALIDMYAKCGSIKDARFMFD 408

Query: 404 KMPPHERDHVVLGALLGACRLHG 426
            +    RD V   A++    +HG
Sbjct: 409 MLDL--RDKVSWNAIICGYSMHG 429



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP--ESQRNIVAESAMI 65
           G ++++ +LF+ +S  + VS  ++I  +++  D  +A +LF  M   + Q   V  S+++
Sbjct: 297 GCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSIL 356

Query: 66  DGYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                   ++   +V       IY  +V    +LI  Y K   + + R +FD   L L++
Sbjct: 357 RACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDM--LDLRD 414

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
            VSW  ++ G + +GL              G+E   M  L +E        D + +  ++
Sbjct: 415 KVSWNAIICGYSMHGL--------------GVEAIKMFNLMKE---TKCKPDELTFVGVL 457

Query: 182 TAYVDAGNMAQASELFNLMPQ 202
           +A  + G + +  + F  M Q
Sbjct: 458 SACSNTGRLDEGKQYFTSMKQ 478


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 152/547 (27%), Positives = 263/547 (48%), Gaps = 81/547 (14%)

Query: 7   TGKVKEATKLFDEMSQP--DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
            G ++EA  ++ EM     DPV   +MI  +LR  +L  A  +F  M  + R++++ SAM
Sbjct: 147 AGMLREAQAVYWEMPPRWRDPVGSNAMIWGYLRGGELGMALRVFDGM--AARDVISWSAM 204

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNV 122
           +DG  K G V EAR++F+ + E NV SWTS+I GY K     +G  LF  M  +    N+
Sbjct: 205 VDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNM 264

Query: 123 VSWTTVVLGCAHNGLI-------------------------------------------- 138
           ++ + V+ GCA   L+                                            
Sbjct: 265 ITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSF 324

Query: 139 -AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197
             + +++SW ++ TG  +N M + A   F  MP KD ++W +M+  + + G M ++ ELF
Sbjct: 325 MNQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELF 384

Query: 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML--- 254
             MP ++   W A++     NG   +A++    M Q    PN    + +L++   +    
Sbjct: 385 EQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLN 444

Query: 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA-----FERLEAKDVV 309
           + + AHA A+ +G+  ++++       Y              RLA     F  +    ++
Sbjct: 445 QGLQAHAYAVNMGWIFDSAVHASLVTMYA----------KCGRLAEAHRVFSCISHPSLI 494

Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
           +  +MI A++ HG     F+LF RM   G +P+ +TF+G+L+ C+ AGLV+ G   F  M
Sbjct: 495 ATNSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESM 554

Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDV 428
              YG +P  +HY+C+ D+L RAG + EA+ + + MP  ++D+     ALL +  LH ++
Sbjct: 555 RSVYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNSMP--QKDYPDAWKALLSSSSLHSNL 612

Query: 429 RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVK 488
            +A    +RL+E+ P  + AY + +N+ ++ G          K +  + KVA  S +  K
Sbjct: 613 DLAKLAAQRLLEIDPYDATAYTVLSNMFSSAG---------MKEDEEMVKVAQLSNMASK 663

Query: 489 GKDHTLL 495
              ++L+
Sbjct: 664 SPGYSLI 670



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 184/419 (43%), Gaps = 50/419 (11%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
           P+     +++T + R   +  A+ LF  MP   R++++ +A++  Y   G +  AR VFD
Sbjct: 39  PNRAHLNALLTSYGRRGRIQDAQQLFDRMP--HRDVISWTALLTAYADVGNLASARFVFD 96

Query: 83  EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142
           ++   N  SW +L+S Y +A +      LF + P K  N VS+  ++ G A  G++ + +
Sbjct: 97  DMPLRNAASWNALVSLYLRAGRPAAAHALFCKAPAK--NAVSYGAIITGLARAGMLREAQ 154

Query: 143 VISW------------TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNM 190
            + W              M  G  R     +A   F  M  +D+++W+AM+      G +
Sbjct: 155 AVYWEMPPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTV 214

Query: 191 AQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
           ++A  LF  MP+RNV +W +MI  Y ++G     + L   M +     N  T + +L  C
Sbjct: 215 SEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGC 274

Query: 251 EG---MLENMLAHALAIRLGFEQETSLTYKCTCHY---------------------VFWD 286
                + E    H L IR+GF ++  L       Y                     V W+
Sbjct: 275 AQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWN 334

Query: 287 ---WGF-QLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
               G+ Q D +  A + F+ +  KD +SWT+M++ ++N G   +   LF +M       
Sbjct: 335 SLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQM----PVK 390

Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
           DEI +  V+S     G      + F  MS+  G +P    +SCL   L     + + ++
Sbjct: 391 DEIAWAAVMSSLVANGNYVSAVRWFCQMSQE-GCRPNTVAFSCLLSALASLAMLNQGLQ 448


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 238/448 (53%), Gaps = 50/448 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           + +I+ YVK   +++A ++FD++ + NV SWT++IS Y K +     ++  + + L L+ 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKI---HQKALELLVLMLRD 156

Query: 121 ----NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               NV ++++V+  C  NG+ + + ++    +  GLE                  D+  
Sbjct: 157 NVRPNVYTYSSVLRSC--NGM-SDVRMLHCGIIKEGLE-----------------SDVFV 196

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I  +   G    A  +F+ M   +   WN++I  +A+N     A++L   M ++ F
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGF 256

Query: 237 MPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYK-----CTCHYVFWDWG 288
           +  + T TS+L +C G+  LE  M AH   ++  ++Q+  L        C C        
Sbjct: 257 IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCG------- 307

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  A   F +++ +DV++W+ MI   + +G+  +  +LF RM  SGTKP+ IT VG
Sbjct: 308 ---SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VL  CSHAGL+E G   F  M + YG  P  EHY C+ D+L +AG++ +A++++++M   
Sbjct: 365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC- 423

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D V    LLGACR+  ++ +A+Y  +++I L P  +G Y L +N++A   +WD   ++
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           R +M +R +KK    S IEV  + H  +
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFI 511



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 59/286 (20%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------------- 54
           + +A +LFD+M Q + +S  +MI+ + +     KA  L   M                  
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 55  -------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
                              + ++   SA+ID + K G  ++A  VFDE+  G+   W S+
Sbjct: 172 CNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI-SWTTMCTGLE 154
           I G+ +  + D    LF RM                    G IA+   + S    CTGL 
Sbjct: 232 IGGFAQNSRSDVALELFKRMK-----------------RAGFIAEQATLTSVLRACTGL- 273

Query: 155 RNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
             A+ +L  +  V +   ++D++  NA++  Y   G++  A  +FN M +R+V TW+ MI
Sbjct: 274 --ALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
              A+NG    A+KL   M  S   PN  T   +L +C   G+LE+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 58/269 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           F   G+ ++A  +FDEM   D +   S+I  F +N     A  LF+ M  +         
Sbjct: 204 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 263

Query: 55  --------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                      ++++  +A++D Y K G +++A +VF+++ E +
Sbjct: 264 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD 323

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V +W+++ISG  +     E  +LF+RM       N ++   V+  C+H GL+       W
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED----GW 379

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNV 205
                     +M KL   Y +  P ++   +  MI     AG +  A +L N M  + + 
Sbjct: 380 YYF------RSMKKL---YGID-PVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427

Query: 206 WTWNAMID--RYARNG--PEGAAMKLLNL 230
            TW  ++   R  RN    E AA K++ L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIAL 456


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 223/449 (49%), Gaps = 42/449 (9%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
           +++++  +   G VD +R++F E  + +V SWT+LI+G  +  +  E    F  M     
Sbjct: 141 QNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGV 200

Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK--DIVAWN 178
            V   T V + CA     A +    W             +    ++V+      D+   +
Sbjct: 201 EVDEVTIVSVLCA-----AAMLRDVW-----------FGRWVHGFYVESGRVIWDVYVGS 244

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A++  Y   G    A ++FN MP RN+ +W A+I  Y +      A+K+   M      P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 239 NETTCTSILTSCE--GMLEN---MLAHALAIRLGFEQE-----TSLTYKCTCHYVFWDWG 288
           N++T TS LT+C   G L+    +  +    +LG   +       +  KC C        
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGC-------- 356

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               V+ A L FE+L AKDV  WTAMI   +  G       LF++M++S  +P+ +TF+G
Sbjct: 357 ----VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLG 412

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VLS C+H GLV++G + F LM   Y  +P  +HY C+ D+L RAG+++EA++ +  M P 
Sbjct: 413 VLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM-PM 471

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E    V GAL   C +H    + ++IG  LI+LQP  SG Y+L AN+++   +W+  A V
Sbjct: 472 EPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANV 531

Query: 469 RKKME-RRVKKVASFSQIEVKGKDHTLLA 496
           R+ M+ + V K    S IEV G  H  +A
Sbjct: 532 RRLMKGKGVDKSPGCSWIEVNGVIHEFIA 560



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 34/260 (13%)

Query: 5   GC--TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-- 56
           GC   G+  EA + F EM     + D V+  S++       D+     +     ES R  
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 57  -NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
            ++   SA++D Y K G  D+A KVF+E+   N+ SW +LI+GY +  +  E  ++F  M
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEM 297

Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
                       ++ G   N    +  V S  T C  L      +   EY     ++  +
Sbjct: 298 ------------IIEGIEPN----QSTVTSALTACAQLGSLDQGRWLHEYV----DRSKL 337

Query: 176 AWN-----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
             N     A++  Y   G + +A  +F  +P ++V+ W AMI+  A  G   +++ L + 
Sbjct: 338 GLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQ 397

Query: 231 MFQSRFMPNETTCTSILTSC 250
           M +SR  PN  T   +L++C
Sbjct: 398 MIRSRVQPNGVTFLGVLSAC 417



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 125/300 (41%), Gaps = 29/300 (9%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D    N++++A+   G +  +  LF    +++V +W A+I+   RNG    A++    M 
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196

Query: 233 QSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLG------FEQETSLTYKCTCHY 282
            S    +E T  S+L +   ML ++      H   +  G      +     +     C Y
Sbjct: 197 SSGVEVDEVTIVSVLCA-AAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255

Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
                      + A   F  +  +++VSW A+I  Y       +  ++F  M+  G +P+
Sbjct: 256 ----------CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPN 305

Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRA-YGFKPRAEHYSCLADILRRAGQVKEAMRV 401
           + T    L+ C+  G +++GR     + R+  G   +    + L D+  + G V EA+ V
Sbjct: 306 QSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLG--TALVDMYSKCGCVDEALLV 363

Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY---VLSANVHAA 458
             K+P   +D     A++    + GD   +  +  ++I  +   +G     VLSA  H  
Sbjct: 364 FEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 204/406 (50%), Gaps = 33/406 (8%)

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
           E NV  WTS+I+GY   + +   RR FD  P +                       +++ 
Sbjct: 3   EKNVVLWTSMINGYLLNKDLVSARRYFDLSPER-----------------------DIVL 39

Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
           W TM +G         AR  F QMP +D+++WN ++  Y + G+M     +F+ MP+RNV
Sbjct: 40  WNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNV 99

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLE-NMLAHA 261
           ++WN +I  YA+NG     +     M  +   +PN+ T T +L++C   G  +     H 
Sbjct: 100 FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHK 159

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
               LG+ +   +  K     ++   G    +  A   F+ ++ +D++SW  MI   + H
Sbjct: 160 YGETLGYNK-VDVNVKNALIDMYGKCG---AIEIAMEVFKGIKRRDLISWNTMINGLAAH 215

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           GHG +   LF  M  SG  PD++TFVGVL  C H GLVE G   FN M   +   P  EH
Sbjct: 216 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH 275

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
             C+ D+L RAG + +A+  ++KMP  + D V+   LLGA +++  V + +   E LI+L
Sbjct: 276 CGCVVDLLSRAGFLTQAVEFINKMPV-KADAVIWATLLGASKVYKKVDIGEVALEELIKL 334

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
           +P +   +V+ +N++   G +D+ A+++  M +   KK A  S IE
Sbjct: 335 EPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIE 380



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 29/284 (10%)

Query: 20  MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
           M + + V   SMI  +L N DL  A   F   PE  R+IV  + MI GY++ G + EAR 
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPE--RDIVLWNTMISGYIEMGNMLEARS 58

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA 139
           +FD++   +V SW +++ GY     ++   R+FD MP   +NV SW  ++ G A NG ++
Sbjct: 59  LFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP--ERNVFSWNGLIKGYAQNGRVS 116

Query: 140 KL-----------EVISWTTMCTGLERNAMTKLAREYFVQMPNK----------DIVAWN 178
           ++            V+      T L  +A  KL    F +  +K          D+   N
Sbjct: 117 EVLGSFKRMVDEGSVVPNDATMT-LVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKN 175

Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
           A+I  Y   G +  A E+F  + +R++ +WN MI+  A +G    A+ L + M  S   P
Sbjct: 176 ALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISP 235

Query: 239 NETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTC 280
           ++ T   +L +C+  G++E+ LA+  ++   F     + + C C
Sbjct: 236 DKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH-CGC 278


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 258/516 (50%), Gaps = 45/516 (8%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMPES---QRNI 58
           G +  A ++FD++ +P      ++I  + RN+    A  ++      R  P+S      +
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 59  VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118
            A S +   +++ GR   A +VF   ++ +V+    LI+ Y K R++   R +F+ +PL 
Sbjct: 127 KACSGL--SHLQMGRFVHA-QVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLP 183

Query: 119 LKNVVSWTTVVLGCAHNG-LIAKLEVIS----------WTTMCTGLERNAMTKLAREYFV 167
            + +VSWT +V   A NG  +  LE+ S          W  + + L  NA T L      
Sbjct: 184 ERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVL--NAFTCLQDLKQG 241

Query: 168 QMPNKDIVAWNAMI---------TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           +  +  +V     I         T Y   G +A A  LF+ M   N+  WNAMI  YA+N
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLT 275
           G    A+ + + M      P+  + TS +++C   G LE   + +    R  +  +  ++
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361

Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
                  +F   G    V  ARL F+R   +DVV W+AMI+ Y  HG   +   L+  M 
Sbjct: 362 SALI--DMFAKCG---SVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
           + G  P+++TF+G+L  C+H+G+V +G   FNLM+  +   P+ +HY+C+ D+L RAG +
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHL 475

Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
            +A  V+  MP  +    V GALL AC+ H  V + +Y  ++L  + PS++G YV  +N+
Sbjct: 476 DQAYEVIKCMPV-QPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNL 534

Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
           +AA   WD  A+VR +M E+ + K    S +EV+G+
Sbjct: 535 YAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +I A    G++  A ++F+ +P+  ++ WNA+I  Y+RN     A+ + + M  +R  P+
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET-------SLTYKCTCHYVFWDWGF 289
             T   +L +C G+         HA   RLGF+ +        +L  KC           
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR---------- 168

Query: 290 QLDVNSARLAFE--RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
              + SAR  FE   L  + +VSWTA++ AY+ +G   +   +F+ M K   KPD +  V
Sbjct: 169 --RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALV 226

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
            VL+  +    +++GR     + +  G +   +    L  +  + GQV  A  +  KM
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVK-MGLEIEPDLLISLNTMYAKCGQVATAKILFDKM 283


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 238/448 (53%), Gaps = 50/448 (11%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
           + +I+ YVK   +++A ++FD++ + NV SWT++IS Y K +     ++  + + L L+ 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKI---HQKALELLVLMLRD 156

Query: 121 ----NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
               NV ++++V+  C  NG+ + + ++    +  GLE                  D+  
Sbjct: 157 NVRPNVYTYSSVLRSC--NGM-SDVRMLHCGIIKEGLE-----------------SDVFV 196

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
            +A+I  +   G    A  +F+ M   +   WN++I  +A+N     A++L   M ++ F
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGF 256

Query: 237 MPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYK-----CTCHYVFWDWG 288
           +  + T TS+L +C G+  LE  M AH   ++  ++Q+  L        C C        
Sbjct: 257 IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCG------- 307

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
               +  A   F +++ +DV++W+ MI   + +G+  +  +LF RM  SGTKP+ IT VG
Sbjct: 308 ---SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
           VL  CSHAGL+E G   F  M + YG  P  EHY C+ D+L +AG++ +A++++++M   
Sbjct: 365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC- 423

Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
           E D V    LLGACR+  ++ +A+Y  +++I L P  +G Y L +N++A   +WD   ++
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483

Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLL 495
           R +M +R +KK    S IEV  + H  +
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFI 511



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 59/286 (20%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------------- 54
           + +A +LFD+M Q + +S  +MI+ + +     KA  L   M                  
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 55  -------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
                              + ++   SA+ID + K G  ++A  VFDE+  G+   W S+
Sbjct: 172 CNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 96  ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI-SWTTMCTGLE 154
           I G+ +  + D    LF RM                    G IA+   + S    CTGL 
Sbjct: 232 IGGFAQNSRSDVALELFKRMK-----------------RAGFIAEQATLTSVLRACTGL- 273

Query: 155 RNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
             A+ +L  +  V +   ++D++  NA++  Y   G++  A  +FN M +R+V TW+ MI
Sbjct: 274 --ALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
              A+NG    A+KL   M  S   PN  T   +L +C   G+LE+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 58/269 (21%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
           F   G+ ++A  +FDEM   D +   S+I  F +N     A  LF+ M  +         
Sbjct: 204 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 263

Query: 55  --------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
                                      ++++  +A++D Y K G +++A +VF+++ E +
Sbjct: 264 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD 323

Query: 89  VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
           V +W+++ISG  +     E  +LF+RM       N ++   V+  C+H GL+       W
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED----GW 379

Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNV 205
                     +M KL   Y +  P ++   +  MI     AG +  A +L N M  + + 
Sbjct: 380 YYF------RSMKKL---YGID-PVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427

Query: 206 WTWNAMID--RYARNG--PEGAAMKLLNL 230
            TW  ++   R  RN    E AA K++ L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIAL 456


>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 501

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 186/327 (56%), Gaps = 11/327 (3%)

Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
           +++IT Y   G +  A +LF+ MP RNV TW A+I  +A+       ++L ++M  S   
Sbjct: 145 SSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCLELFSVMRNSTLK 204

Query: 238 PNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
           PN+ T TS+L++C G   + +   AH   I++GF      +Y    + +   +     V+
Sbjct: 205 PNDFTFTSLLSACTGSGALGQGTSAHCQIIQMGFH-----SYLHVANALISMYCKSGSVH 259

Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
            A   F  + +KD+VSW +MI  Y+ HG   Q   LF +M K G KPD ITF+GVLS C 
Sbjct: 260 DAFYIFNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFEKMTKLGVKPDSITFLGVLSACR 319

Query: 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414
           HAG V+ GR  FN M   Y  +P+ +HYSCL D+L RAG ++EA+ ++ +MP    + V+
Sbjct: 320 HAGFVQGGRNYFNSMVE-YHLRPQLDHYSCLVDLLGRAGLIEEALDIILRMPILP-NAVI 377

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-E 473
            G+LL +CRLHG V +     E+ + L+P+ +  +V  AN++A+   WD+ A+VRK M +
Sbjct: 378 WGSLLSSCRLHGSVWIGIQAAEQRLLLEPACAATHVQLANLYASVRYWDKAAKVRKVMKD 437

Query: 474 RRVKKVASFSQIEVKGKDHTLLAPMRE 500
             +K    +S IE+K K H   A  R 
Sbjct: 438 TGLKTNPGYSWIEIKNKVHRFRAEDRS 464



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           N    S++I  Y K G++D A K+F E+   NV +WT++ISG+ +  QVD    LF  M 
Sbjct: 140 NSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCLELFSVMR 199

Query: 116 --PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
              LK  N  ++T+++  C  +G +             G   +A  ++ +  F    +  
Sbjct: 200 NSTLK-PNDFTFTSLLSACTGSGAL-------------GQGTSAHCQIIQMGF----HSY 241

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
           +   NA+I+ Y  +G++  A  +FN +  +++ +WN+MI  YA++G    A+ L   M +
Sbjct: 242 LHVANALISMYCKSGSVHDAFYIFNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFEKMTK 301

Query: 234 SRFMPNETTCTSILTSC 250
               P+  T   +L++C
Sbjct: 302 LGVKPDSITFLGVLSAC 318



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 116/259 (44%), Gaps = 36/259 (13%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           +G  GK+  A KLF EM   + V+  ++I+ F +   +     LF  M  S  + N    
Sbjct: 151 YGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCLELFSVMRNSTLKPNDFTF 210

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSW----TSLISGYFKARQVDEGRRLFDRMPL 117
           ++++     +G + +      +I +   +S+     +LIS Y K+  V +   +F+   +
Sbjct: 211 TSLLSACTGSGALGQGTSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYIFNN--I 268

Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
             K++VSW +++ G A +GL   ++ I         E+  MTKL  +        D + +
Sbjct: 269 YSKDIVSWNSMISGYAQHGL--AMQAIDL------FEK--MTKLGVK-------PDSITF 311

Query: 178 NAMITAYVDAGNMAQASELFNLM------PQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
             +++A   AG +      FN M      PQ +   ++ ++D   R G    A   L+++
Sbjct: 312 LGVLSACRHAGFVQGGRNYFNSMVEYHLRPQLD--HYSCLVDLLGRAGLIEEA---LDII 366

Query: 232 FQSRFMPNETTCTSILTSC 250
            +   +PN     S+L+SC
Sbjct: 367 LRMPILPNAVIWGSLLSSC 385


>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
 gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
          Length = 451

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 200/413 (48%), Gaps = 33/413 (7%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +V+   +L+  Y     V + RR+FD MP+K         VV+G                
Sbjct: 45  SVHVGAALLDLYGNIGLVGDARRVFDEMPVK--------NVVVG---------------N 81

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           TM     R      ARE F  M  +D ++WN +++ Y+  G+ A   ELF+ M  RNV +
Sbjct: 82  TMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNS 141

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           WN MI   +  G     +K+ N M  + F P+  T   ++++C  +    +A  +    G
Sbjct: 142 WNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVH---G 198

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
             Q++ +   C       D   +   ++ A+  F     KD VS+  MI+A++ HGH   
Sbjct: 199 LLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARD 258

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              LF  M+ SG +PD +TF+GVLS C+HAGLVE G+  F LM   Y  +   +HY+C+ 
Sbjct: 259 ALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVV 318

Query: 387 DILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
           D+  RAG ++EA   V  MP  PH     V GALL ACR H  V + +   + LI ++P 
Sbjct: 319 DLYGRAGLIEEAHCFVKTMPVKPHAG---VWGALLNACRKHCHVDVGEIAAKELIRIEPK 375

Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERRV-KKVASFSQIEVKGKDHTLLA 496
           + G YVL  N  A   +WD    V+  M R+V  K A  S +EV    H  LA
Sbjct: 376 NPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVDSVVHEFLA 428



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 30/235 (12%)

Query: 44  AEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103
           A  +F  MP   +N+V  + M+   V+AG +  AR+VFD + E +  SW +L+SGY    
Sbjct: 65  ARRVFDEMP--VKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLG 122

Query: 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT---- 159
                R LFD M   ++NV SW T++  C+  G +A    +      TG E +A T    
Sbjct: 123 DTATVRELFDEM--TVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVL 180

Query: 160 -----------------KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
                             L ++  V+M   +    N++I  Y   G ++QA  LF     
Sbjct: 181 MSACAQLGSLTIAGQVHGLLQKSCVEM---NCHVQNSLIDMYAKCGCISQAQFLFTETYP 237

Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE 255
           ++  ++N MI  +A++G    A+ L N M  S   P+  T   +L++C   G++E
Sbjct: 238 KDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVE 292



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 32/266 (12%)

Query: 8   GKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
           G + +  K+F+ M     +PD  + A +++   +   L  A  +   + +S  + N   +
Sbjct: 153 GSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQ 212

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
           +++ID Y K G + +A+ +F E Y  +  S+  +I  + +     +   LF+ M      
Sbjct: 213 NSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQ 272

Query: 120 KNVVSWTTVVLGCAHNGLIA----KLEVISWT-----------TMCTGLERNAMTKLARE 164
            + V++  V+  CAH GL+       E++  T            +     R  + + A  
Sbjct: 273 PDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHC 332

Query: 165 YFVQMPNKDIVA-WNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
           +   MP K     W A++ A     +VD G +A A EL  + P +N   +  + +  AR 
Sbjct: 333 FVKTMPVKPHAGVWGALLNACRKHCHVDVGEIA-AKELIRIEP-KNPGNYVLLRNTLAR- 389

Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCT 244
           G +  A++ + L  + + +     C+
Sbjct: 390 GQQWDAVEDVQLSMRRKVIDKTAGCS 415


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 238/464 (51%), Gaps = 46/464 (9%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKN 121
           +I  Y K   +  AR VFDE+ E NV SWT++ISGY +     E   LF +M       N
Sbjct: 51  LIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPN 110

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             ++ TV+  C               T  +G E     ++    F +     I   ++++
Sbjct: 111 EFTFATVLSSC---------------TGFSGFELG--RQIHSHIFKRNYENHIFVGSSLL 153

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y  AG + +A  +F  +P+R+V +  A+I  YA+ G +  A++L   + +     N  
Sbjct: 154 DMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYV 213

Query: 242 TCTSILTSCEGML-----ENMLAHALAIRLGFE---QETSLTYKCTCHYVFWDWGFQLDV 293
           T  S+LT+  G+      + + +H L   L F    Q + +     C           ++
Sbjct: 214 TYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCG----------NL 263

Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSD 352
           N AR  F  +  + V+SW AM++ YS HG G +V +LF  M +    KPD +TF+ VLS 
Sbjct: 264 NYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSG 323

Query: 353 CSHAGLVEKGRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
           CSH GL +KG + F+ +M+     +   EHY C+ D+L RAG+V+EA  ++ KM P E  
Sbjct: 324 CSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKM-PFEPT 382

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK- 470
             + G+LLGACR+H +  + +++G RL+E++P ++G YV+ +N++A+ G W++   VR+ 
Sbjct: 383 AAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVREL 442

Query: 471 KMERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
            ME+ V K    S IE+    HT  A     P RE  ++ ++E+
Sbjct: 443 MMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVREL 486



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 27/209 (12%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + +I   S+++D Y KAGR+ EAR VF+ + E +V S T++ISGY +    +E   LF R
Sbjct: 143 ENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCR 202

Query: 115 MPLK--LKNVVSWTTVVLGCAHNGLIA---KLEVISWTTMCTGLERNAMTKLAREYFVQM 169
           +  +    N V++ +++   A +GL A     +V S    C                 ++
Sbjct: 203 LQREGMSSNYVTYASLLT--ALSGLAALDHGKQVHSHVLRC-----------------EL 243

Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
           P   +V  N++I  Y   GN+  A ++FN MP R V +WNAM+  Y+++G     +KL  
Sbjct: 244 PFY-VVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFK 302

Query: 230 LMF-QSRFMPNETTCTSILTSC-EGMLEN 256
           LM  +++  P+  T  ++L+ C  G LE+
Sbjct: 303 LMREENKVKPDSVTFLAVLSGCSHGGLED 331



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 33/255 (12%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLR-NHDLPKAEALFRAMPES-QRNIVAESAMI 65
           G++ EA  +F+ + + D VSC ++I+ + +   D    E   R   E    N V  ++++
Sbjct: 160 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLL 219

Query: 66  DGYVKAGRVDEARKVFDEIYEGN----VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                   +D  ++V   +        V    SLI  Y K   ++  R++F+ MP  ++ 
Sbjct: 220 TALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP--VRT 277

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
           V+SW  +++G + +G               G+E   + KL RE     P  D V + A++
Sbjct: 278 VISWNAMLVGYSKHG--------------KGIEVVKLFKLMREENKVKP--DSVTFLAVL 321

Query: 182 TAYVDAGNMAQASELFNLM------PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           +     G   +  E+F+ M       +  +  +  +ID   R G    A +L+  M    
Sbjct: 322 SGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKM---P 378

Query: 236 FMPNETTCTSILTSC 250
           F P      S+L +C
Sbjct: 379 FEPTAAIWGSLLGAC 393


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/536 (29%), Positives = 247/536 (46%), Gaps = 76/536 (14%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRN--------------------------HDLP 42
           +V EA K+FD M + D VS  +++  + +N                            LP
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244

Query: 43  KAEAL-------------FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
              AL              R+  +S  NI   +A++D Y K G ++ AR++FD + E NV
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNI--STALVDMYAKCGSLETARQLFDGMLERNV 302

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV-VLG----CAHNGLIAKLEVI 144
            SW S+I  Y +     E   +F +M   L   V  T V V+G    CA  G + +   I
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKM---LDEGVKPTDVSVMGALHACADLGDLERGRFI 359

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
              ++  GL+RN                 +   N++I+ Y     +  A+ +F  +  R 
Sbjct: 360 HKLSVELGLDRN-----------------VSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402

Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HA 261
           + +WNAMI  +A+NG    A+   + M      P+  T  S++T+   +     A   H 
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
           + +R   ++   +T      Y          +  ARL F+ +  + V +W AMI  Y  H
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCG-----AIMIARLIFDMMSERHVTTWNAMIDGYGTH 517

Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
           G G     LF  M K   KP+ +TF+ V+S CSH+GLVE G K F +M   Y  +   +H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577

Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
           Y  + D+L RAG++ EA   + +MP     + V GA+LGAC++H +V  A+   ERL EL
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN-VYGAMLGACQIHKNVNFAEKAAERLFEL 636

Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
            P   G +VL AN++ A   W++  QVR  M R+ ++K    S +E+K + H+  +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 38/379 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++ A + + + Y K  +V+EARKVFD + E ++ SW ++++GY         +    RM 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY--------SQNGMARMA 220

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
           L++   +        C  N   + + ++S     + L   ++ K    Y ++     +V 
Sbjct: 221 LEMVKSM--------CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 177 WN-AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
            + A++  Y   G++  A +LF+ M +RNV +WN+MID Y +N     AM +   M    
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 236 FMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDW 287
             P + +    L +C   G LE     H L++ LG ++  S     ++  C C       
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK------ 386

Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
               +V++A   F +L+++ +VSW AMIL ++ +G        F++M     KPD  T+V
Sbjct: 387 ----EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442

Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
            V++  +   +    +    ++ R+          + L D+  + G +  A  +   M  
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS- 500

Query: 408 HERDHVVLGALLGACRLHG 426
            ER      A++     HG
Sbjct: 501 -ERHVTTWNAMIDGYGTHG 518



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 148/307 (48%), Gaps = 25/307 (8%)

Query: 61  ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
           ++ ++  + + G VDEA +VF+ I       + +++ G+ K   +D+  + F RM    +
Sbjct: 72  QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131

Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
           + VV   T +L     G  A+L V        G E + +  L +  F    + D+ A   
Sbjct: 132 EPVVYNFTYLLKVC--GDEAELRV--------GKEIHGL--LVKSGF----SLDLFAMTG 175

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           +   Y     + +A ++F+ MP+R++ +WN ++  Y++NG    A++++  M +    P+
Sbjct: 176 LENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPS 235

Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
             T  S+L +   +    +    H  A+R GF+   +++      Y          + +A
Sbjct: 236 FITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-----SLETA 290

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
           R  F+ +  ++VVSW +MI AY  + +  +   +F +ML  G KP +++ +G L  C+  
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350

Query: 357 GLVEKGR 363
           G +E+GR
Sbjct: 351 GDLERGR 357



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 28/295 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM--I 65
           G ++ A +LFD M + + VS  SMI  +++N +  +A  +F+ M +        S M  +
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344

Query: 66  DGYVKAGRVDEAR---KVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
                 G ++  R   K+  E+  + NV    SLIS Y K ++VD    +F +  L+ + 
Sbjct: 345 HACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQSRT 402

Query: 122 VVSWTTVVLGCAHNG--------------LIAKLEVISWTTMCTGLERNAMTKLAR-EYF 166
           +VSW  ++LG A NG                 K +  ++ ++ T +   ++T  A+  + 
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 167 VQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
           V M    +K++    A++  Y   G +  A  +F++M +R+V TWNAMID Y  +G   A
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522

Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTY 276
           A++L   M +    PN  T  S++++C   G++E  L     ++  +  E S+ +
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 142/355 (40%), Gaps = 42/355 (11%)

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
           L +E+F Q           +++ +   G++ +A+ +F  +  +    ++ M+  +A+   
Sbjct: 65  LYQEHFFQ---------TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSD 115

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET----- 272
              A++    M      P     T +L  C    E  +    H L ++ GF  +      
Sbjct: 116 LDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175

Query: 273 --SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
             ++  KC              VN AR  F+R+  +D+VSW  ++  YS +G       +
Sbjct: 176 LENMYAKCR------------QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
              M +   KP  IT V VL   S   L+  G++      R+ GF       + L D+  
Sbjct: 224 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS-GFDSLVNISTALVDMYA 282

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           + G ++ A ++   M   ER+ V   +++ A   + + + A  I +++++     +   V
Sbjct: 283 KCGSLETARQLFDGML--ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340

Query: 451 LSANVHAA-------RGEWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLAPM 498
           + A +HA        RG +     V   ++R V  V S   +  K K+    A M
Sbjct: 341 MGA-LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 28/226 (12%)

Query: 4   FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
           F   G+  +A   F +M     +PD  +  S+IT          A+ +   +  S   +N
Sbjct: 413 FAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKN 472

Query: 58  IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           +   +A++D Y K G +  AR +FD + E +V +W ++I GY           LF+ M  
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK 532

Query: 118 KL--KNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMTK 160
                N V++ +V+  C+H+GL+                +L +  +  M   L R     
Sbjct: 533 GTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLN 592

Query: 161 LAREYFVQMPNKDIV-AWNAMITAYVDAGNM----AQASELFNLMP 201
            A ++ +QMP K  V  + AM+ A     N+      A  LF L P
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 638


>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
 gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
          Length = 438

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 194/356 (54%), Gaps = 18/356 (5%)

Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
           AR+ F   P K++V+WN+M+  Y   G +  A  LF+LMP+R+V +W+ +ID YA++G  
Sbjct: 64  ARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNY 123

Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKC 278
           G AM +   M  S    NE T  S+L +C   G L+   + H   +  GF  E +L  + 
Sbjct: 124 GDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGF--ELNLVLRT 181

Query: 279 TCHYVFWDWGFQLDVNSARLAFE--RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
           +   ++   G    V  A   F    L   DV+ W AMI   + HG   +   L+  M  
Sbjct: 182 SLIDMYAKCG---AVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQI 238

Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
           +G KPDEITF+ +LS C+H GLV++    F  + +  G  P+ EHY+C+ D++ RAGQV 
Sbjct: 239 AGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKN-GMTPKTEHYACMVDVMARAGQVA 297

Query: 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456
           EA + + +MP  E    +LGALL  C  HG + +A+ IG++LIEL P   G YV  +NV+
Sbjct: 298 EAYQFLCQMPL-EPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVY 356

Query: 457 AARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVL 506
           A    WDE   +R+ MERR VKK   +S +E+ G  H  +A     P  E  Y +L
Sbjct: 357 AIGRRWDEARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSSEQIYTML 412



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 23/225 (10%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           S+I ++    D+  A  +F   P   +N+V+ ++M+DGY K G +D AR +FD + E +V
Sbjct: 50  SLIHMYGSCGDIVYARKVFDGTP--VKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDV 107

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
            SW+ LI GY K+    +   +F++M       N V+  +V+  CAH G + K  ++   
Sbjct: 108 RSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQY 167

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR--NV 205
            +  G E N                 +V   ++I  Y   G + +A  +F  +  R  +V
Sbjct: 168 LVDNGFELN-----------------LVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDV 210

Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
             WNAMI   A +G    ++ L   M  +   P+E T   +L++C
Sbjct: 211 LIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSAC 255


>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
 gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
          Length = 438

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 194/359 (54%), Gaps = 28/359 (7%)

Query: 88  NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
           +VY   + IS YF A  V    RLF    L   +V                   +V++WT
Sbjct: 100 DVYVANAAISSYFAASDVASADRLFAE--LSADDVA------------------DVVTWT 139

Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
           TM TG       + AR +F  MP++++V+WNAM+ AY  AG ++QA +LF+ MPQRN  T
Sbjct: 140 TMVTGHANATNLQRARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAAT 199

Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267
           W++M+     +G  G A+++ + M +S  +PNE    S++++C  +    L +   +   
Sbjct: 200 WSSMLTGLVLSGRCGEALRVFHDMVRSGAVPNEPALVSVVSACAQL--RSLEYGAWVHGY 257

Query: 268 FEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
            EQE              D +G    ++SA   F  +  ++V SW AMI   + +G   Q
Sbjct: 258 AEQELQGAMSVILASAIIDMYGKCGGIHSAVRVFAAMPVRNVYSWNAMIAGLAMNGGERQ 317

Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
              L  +M  +G +P++ITF+G+LS CSH+GLV +GR+ F+ M   +G +P   HY  + 
Sbjct: 318 ALSLLWKMQMAGVRPNDITFIGLLSACSHSGLVNEGRRLFDSMIEDFGIQPVQHHYGLMV 377

Query: 387 DILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
           D++ R+G+VKEA+  V  MP  PH     + GAL  AC++HG+V + + + ++LIEL+P
Sbjct: 378 DLIGRSGRVKEALFFVKSMPVEPHPG---LWGALASACKMHGEVELGEEVAKKLIELEP 433



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 99/247 (40%), Gaps = 55/247 (22%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
            ++ A   FD M   + VS  +M+  +     L +A  LF AMP  QRN    S+M+ G 
Sbjct: 150 NLQRARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMP--QRNAATWSSMLTGL 207

Query: 69  VKAGRVDEARKVF-DEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
           V +GR  EA +VF D +  G   N  +  S++S   + R ++ G  +      +L+  +S
Sbjct: 208 VLSGRCGEALRVFHDMVRSGAVPNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGAMS 267

Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
              V+L  A         +I     C G+        A   F  MP +++ +WNAMI   
Sbjct: 268 ---VILASA---------IIDMYGKCGGIHS------AVRVFAAMPVRNVYSWNAMIAG- 308

Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
                                          A NG E  A+ LL  M  +   PN+ T  
Sbjct: 309 ------------------------------LAMNGGERQALSLLWKMQMAGVRPNDITFI 338

Query: 245 SILTSCE 251
            +L++C 
Sbjct: 339 GLLSACS 345



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 40/175 (22%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMIT-------------VF---LRNHDLPKAEAL 47
           +   G + +A  LFD M Q +  + +SM+T             VF   +R+  +P   AL
Sbjct: 176 YASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLSGRCGEALRVFHDMVRSGAVPNEPAL 235

Query: 48  FRAMP----------------------ESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
              +                       +   +++  SA+ID Y K G +  A +VF  + 
Sbjct: 236 VSVVSACAQLRSLEYGAWVHGYAEQELQGAMSVILASAIIDMYGKCGGIHSAVRVFAAMP 295

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLI 138
             NVYSW ++I+G        +   L  +M +     N +++  ++  C+H+GL+
Sbjct: 296 VRNVYSWNAMIAGLAMNGGERQALSLLWKMQMAGVRPNDITFIGLLSACSHSGLV 350


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           N    SA++D Y    +V   R+VFD +++  +  W ++I+GY +     E   LF  M 
Sbjct: 250 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 309

Query: 117 LK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK------------- 160
                L N  +   VV  C  +G  ++ E I    +  GL+R+   +             
Sbjct: 310 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 369

Query: 161 -LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
            +A   F +M ++D+V WN MIT YV + +   A  L + M           ++R    G
Sbjct: 370 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN---------LERKVSKG 420

Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS--- 273
               ++K           PN  T  +IL SC     + +    HA AI+     + +   
Sbjct: 421 ASRVSLK-----------PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 469

Query: 274 ----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
               +  KC C            +  +R  F+++  K+V++W  +I+AY  HG+G +   
Sbjct: 470 ALVDMYAKCGC------------LQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 517

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           L   M+  G KP+E+TF+ V + CSH+G+V++G + F +M   YG +P ++HY+C+ D+L
Sbjct: 518 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 577

Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGA---LLGACRLHGDVRMADYIGERLIELQPSSS 446
            RAG++KEA ++++ MP   RD    GA   LLGA R+H ++ + +   + LI+L+P+ +
Sbjct: 578 GRAGRIKEAYQLMNMMP---RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 634

Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
             YVL AN++++ G WD+  +VR+ M E+ V+K    S IE   + H  +A
Sbjct: 635 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVA 685



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 145/376 (38%), Gaps = 42/376 (11%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
           ++   + +++ Y K G      KVFD I E N  SW SLIS      + +     F  M 
Sbjct: 45  SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM- 103

Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL---ERNAMTKLAREYFVQMPNKD 173
             L   V  ++  L             +S  T C+ L   E   M K    Y ++    +
Sbjct: 104 --LDENVEPSSFTL-------------VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 148

Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
               N ++  Y   G +A +  L      R++ TWN ++    +N     A++ L  M  
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT------YKCTCHYVF 284
               P+E T +S+L +C   E +      HA A++ G   E S          C C  V 
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 268

Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE 343
                     S R  F+ +  + +  W AMI  YS + H  +   LF  M +S G   + 
Sbjct: 269 ----------SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 318

Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
            T  GV+  C  +G   +       + +  G        + L D+  R G++  AMR+  
Sbjct: 319 TTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 377

Query: 404 KMPPHERDHVVLGALL 419
           KM   +RD V    ++
Sbjct: 378 KM--EDRDLVTWNTMI 391



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 15/258 (5%)

Query: 11  KEATKLFDEMSQP-----DPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESA 63
           KEA  LF  M +      +  + A ++   +R+    + EA+  F       R+   ++ 
Sbjct: 299 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 358

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           ++D Y + G++D A ++F ++ + ++ +W ++I+GY  +   ++   L  +M   L+  V
Sbjct: 359 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ-NLERKV 417

Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
           S     +    N     + +++    C  L   A  K    Y ++     D+   +A++ 
Sbjct: 418 SKGASRVSLKPN----SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 473

Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
            Y   G +  + ++F+ +PQ+NV TWN +I  Y  +G    A+ LL +M      PNE T
Sbjct: 474 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 533

Query: 243 CTSILTSC--EGMLENML 258
             S+  +C   GM++  L
Sbjct: 534 FISVFAACSHSGMVDEGL 551



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 98/468 (20%), Positives = 192/468 (41%), Gaps = 64/468 (13%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G      K+FD +S+ + VS  S+I+          A   FR M +   N+   S  +  
Sbjct: 60  GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD--ENVEPSSFTLVS 117

Query: 68  YVKAGR---VDEARKVFDEIY-------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
            V A     + E   +  +++       E N +   +L++ Y K  ++   + L      
Sbjct: 118 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLG--SF 175

Query: 118 KLKNVVSWTTVVLG-CAHNGLIAKLEVI----------------SWTTMCTGLERNAMTK 160
             +++V+W TV+   C +  L+  LE +                S    C+ LE     K
Sbjct: 176 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 235

Query: 161 LAREYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
               Y ++  + D  ++  +A++  Y +   +     +F+ M  R +  WNAMI  Y++N
Sbjct: 236 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 295

Query: 219 GPEGAAMKLLNLMFQSR-FMPNETTCTSILTSC--EGMLENMLA-HALAIRLGFEQETSL 274
             +  A+ L   M +S   + N TT   ++ +C   G      A H   ++ G +++  +
Sbjct: 296 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 355

Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
             + T   ++   G ++D+  A   F ++E +D+V+W  MI  Y    H      L  +M
Sbjct: 356 --QNTLMDMYSRLG-KIDI--AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 410

Query: 335 L-----------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH-- 381
                       +   KP+ IT + +L  C+    + KG++       AY  K       
Sbjct: 411 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-----HAYAIKNNLATDV 465

Query: 382 --YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
              S L D+  + G ++ + +V  ++P  +++ +    ++ A  +HG+
Sbjct: 466 AVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGN 511



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 101/261 (38%), Gaps = 76/261 (29%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMIT--VFLRNHD------------------------- 40
           GK+  A ++F +M   D V+  +MIT  VF  +H+                         
Sbjct: 367 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 426

Query: 41  LPKAEALFRAMPES---------------------QRNIVAESAMIDGYVKAGRVDEARK 79
            P +  L   +P                         ++   SA++D Y K G +  +RK
Sbjct: 427 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 486

Query: 80  VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL 137
           VFD+I + NV +W  +I  Y       E   L   M ++    N V++ +V   C+H+G+
Sbjct: 487 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 546

Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----AGNMAQA 193
           + +           GL         R ++V  P+  +   +      VD    AG + +A
Sbjct: 547 VDE-----------GL---------RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 586

Query: 194 SELFNLMPQ--RNVWTWNAMI 212
            +L N+MP+       W++++
Sbjct: 587 YQLMNMMPRDFNKAGAWSSLL 607


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 225/435 (51%), Gaps = 29/435 (6%)

Query: 64  MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM--PLKLKN 121
           +ID Y+K+G VD+A +VF+E+ + +V  W+ +I+ Y ++ Q +E   +F RM   L L N
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
             +  +++  CA    +     I    +  GL+ N                     NA++
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVS-----------------NALM 389

Query: 182 TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
             Y   G M  + +LF+  P     +WN +I  Y + G    A+ L   M + +    E 
Sbjct: 390 DMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEV 449

Query: 242 TCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
           T +S+L +C G+  LE     H+L+++  +++ T +       Y         ++  ARL
Sbjct: 450 TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCG-----NIKDARL 504

Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
            F+ L   D VSW AMI  YS HG   +  + F  ML++  KPD++TFVG+LS CS+AGL
Sbjct: 505 VFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGL 564

Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
           +++G+  F  M   Y  +P AEHY+C+  +L R+G + +A ++V ++ P E   +V  AL
Sbjct: 565 LDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEI-PFEPSVMVWRAL 623

Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VK 477
           L AC +H DV +     +R++E++P     +VL +N++A    W   A +R  M+R+ ++
Sbjct: 624 LSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIR 683

Query: 478 KVASFSQIEVKGKDH 492
           K    S IE +G+ H
Sbjct: 684 KEPGLSWIENQGRVH 698



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 192/459 (41%), Gaps = 67/459 (14%)

Query: 10  VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQR------------ 56
           + +A KLFDEM   + VS  ++I  + +     +A  LF R   E               
Sbjct: 95  LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKL 154

Query: 57  ------------------------NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSW 92
                                   +    +A+ID Y   G  + AR+VFD I   ++ SW
Sbjct: 155 LVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSW 214

Query: 93  TSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
           T +++ Y +    +E  +LF RM +     N  ++ +V+  C        LEV +     
Sbjct: 215 TGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC------VGLEVFNVGKAV 268

Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
            G      T    E FV +          +I  Y+ +G++  A ++F  MP+ +V  W+ 
Sbjct: 269 HGCAFK--TSYLEELFVGVE---------LIDLYIKSGDVDDALQVFEEMPKDDVIPWSF 317

Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLG 267
           MI RYA++     A+++   M +   +PN+ T  S+L +C  +++  L    H   +++G
Sbjct: 318 MIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVG 377

Query: 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQV 327
            +    ++      Y       +++ NS +L  E     D VSW  +I+ Y   G+G + 
Sbjct: 378 LDMNVFVSNALMDMYAKCG---RME-NSLQLFSESPNCTD-VSWNTVIVGYVQAGNGEKA 432

Query: 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387
             LF  ML+   +  E+T+  VL  C+    +E G +  +L  +   +       + L D
Sbjct: 433 LILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI-YDKNTVVGNALID 491

Query: 388 ILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
           +  + G +K+A  V   +  H  D V   A++    +HG
Sbjct: 492 MYAKCGNIKDARLVFDMLREH--DQVSWNAMISGYSVHG 528



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 165/395 (41%), Gaps = 50/395 (12%)

Query: 29  ASMITVFLRNHDLPKAEALFRAMPESQR--NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
            S++   +RN D    + L   + +     ++ A + +++ YVK   + +A K+FDE+ +
Sbjct: 48  GSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPD 107

Query: 87  GNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNVVSWTTVVLGCAH 134
            N  S+ +LI GY +  +  E   LF R+               LK +VS     LG + 
Sbjct: 108 RNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSV 167

Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
           +  + KL          G + +A                     A+I  Y   G    A 
Sbjct: 168 HACVYKL----------GFDSDAFVG-----------------TALIDCYSVCGYAECAR 200

Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM- 253
           ++F+ +  +++ +W  M+  Y  N     ++KL + M    F PN  T  S+L +C G+ 
Sbjct: 201 QVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLE 260

Query: 254 LENM--LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
           + N+    H  A +  + +E  +  +    Y+        DV+ A   FE +   DV+ W
Sbjct: 261 VFNVGKAVHGCAFKTSYLEELFVGVELIDLYI-----KSGDVDDALQVFEEMPKDDVIPW 315

Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
           + MI  Y+      +   +F RM +    P++ T   +L  C+    ++ G +    + +
Sbjct: 316 SFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK 375

Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
             G        + L D+  + G+++ ++++ S+ P
Sbjct: 376 V-GLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 32/299 (10%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF-DRM 115
           N+   +A++D Y K GR++ + ++F E       SW ++I GY +A   ++   LF D +
Sbjct: 381 NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDML 440

Query: 116 PLKLKNV-VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
             +++   V++++V+  CA    IA LE         G + ++++         + +K+ 
Sbjct: 441 ECQVQGTEVTYSSVLRACAG---IAALE--------PGSQIHSLS------VKTIYDKNT 483

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
           V  NA+I  Y   GN+  A  +F+++ + +  +WNAMI  Y+ +G  G A+K    M ++
Sbjct: 484 VVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLET 543

Query: 235 RFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF--- 289
              P++ T   IL++C   G+L+   A+  ++   ++ E      C  HY    W     
Sbjct: 544 ECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIE-----PCAEHYTCMVWLLGRS 598

Query: 290 -QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
             LD  +A+L  E      V+ W A++ A   H +  ++ R+ A+ +      DE T V
Sbjct: 599 GHLD-KAAKLVHEIPFEPSVMVWRALLSACVIH-NDVELGRISAQRVLEIEPEDEATHV 655



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 26/252 (10%)

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
           D+ A N ++  YV   ++  A++LF+ MP RN  ++  +I  Y++      A+ L + + 
Sbjct: 78  DLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQ 137

Query: 233 QSRFMPNE---TTCTSILTSCEGMLENMLAHALAIRLGFEQETSL-TYKCTCHYVFWDWG 288
                 N    +T   +L S E        HA   +LGF+ +  + T    C+ V    G
Sbjct: 138 GEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSV---CG 194

Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
           +      AR  F+ +E KD+VSWT M+  Y  +    +  +LF+RM   G KP+  TF  
Sbjct: 195 Y---AECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFAS 251

Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS------CLADILRRAGQVKEAMRVV 402
           VL  C        G + FN+    +G   +  +         L D+  ++G V +A++V 
Sbjct: 252 VLKACV-------GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304

Query: 403 SKMPPHERDHVV 414
            +MP   +D V+
Sbjct: 305 EEMP---KDDVI 313



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 64/249 (25%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ------------ 55
           G+++ + +LF E      VS  ++I  +++  +  KA  LF+ M E Q            
Sbjct: 396 GRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVL 455

Query: 56  -------------------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                    +N V  +A+ID Y K G + +AR VFD + E +  
Sbjct: 456 RACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQV 515

Query: 91  SWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
           SW ++ISGY       E  + F+ M      P K    V++  ++  C++ GL+ + +  
Sbjct: 516 SWNAMISGYSVHGLYGEALKTFESMLETECKPDK----VTFVGILSACSNAGLLDRGQAY 571

Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QR 203
                           +  EY ++ P  +   +  M+     +G++ +A++L + +P + 
Sbjct: 572 -------------FKSMVEEYDIE-PCAE--HYTCMVWLLGRSGHLDKAAKLVHEIPFEP 615

Query: 204 NVWTWNAMI 212
           +V  W A++
Sbjct: 616 SVMVWRALL 624


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 171/644 (26%), Positives = 273/644 (42%), Gaps = 146/644 (22%)

Query: 3   QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-------- 54
           +FG  G    A  LFDEM + D VS  +MI+ +     L  A  LF  M  S        
Sbjct: 47  KFGFLGY---ANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYS 103

Query: 55  -----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
                                        + N+   S+++D Y K  RV++A + F EI 
Sbjct: 104 FSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS 163

Query: 86  EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK------------------------LKN 121
           E N  SW +LI+G+ + R +     L   M +K                        L  
Sbjct: 164 EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLK 223

Query: 122 VVSWTTVVLGCAH-------------------------NGLIAKLEVISWTTMCTGLERN 156
            V    + LG  H                         +GL    ++ISW +M  G  ++
Sbjct: 224 QVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKH 283

Query: 157 AMTKLAREYFVQMP----NKDIVAW----------------------------------- 177
            + + A E F+QM       DI  +                                   
Sbjct: 284 ELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSAT 343

Query: 178 NAMITAYVD--AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
           NA+I+ Y+    G M  A  LF  +  +++ +WN++I  +A+ G    A+K  + +  S 
Sbjct: 344 NALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSE 403

Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
              ++   +++L SC  +    L    HALA + GF     +       Y     G    
Sbjct: 404 IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYS--KCGI--- 458

Query: 293 VNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           + SAR  F+++ +K   V+W AMIL Y+ HG G     LF++M     K D +TF  +L+
Sbjct: 459 IESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILT 518

Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
            CSH GL+++G +  NLM   Y  +PR EHY+   D+L RAG V +A  ++  MP +  D
Sbjct: 519 ACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNP-D 577

Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
            +VL   LG CR  G++ MA  +   L+E++P     YV  +++++   +W+E A V+K 
Sbjct: 578 PMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKM 637

Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
           M ER VKKV  +S IE++ +     A     P+ +  Y+++K++
Sbjct: 638 MKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDL 681



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 169/443 (38%), Gaps = 95/443 (21%)

Query: 54  SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
           S  +I   + ++D Y+K G +  A  +FDE+ + +  SW ++ISGY    ++++   LF 
Sbjct: 31  SISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT 90

Query: 114 RMPLK------------LKNVVSWTTVVLGCAHNGLIAK----LEVISWTTMCTGLERNA 157
            M               LK + S     LG   +GL+ K      V   +++     +  
Sbjct: 91  CMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCE 150

Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP---------------- 201
             + A E F ++   + V+WNA+I  +V   ++  A  L  LM                 
Sbjct: 151 RVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLL 210

Query: 202 ------------------------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-- 235
                                   Q  +   NAMI  YA  G    A ++ + +  S+  
Sbjct: 211 TLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDL 270

Query: 236 ---------FMPNET---------------------TCTSILTSCEGMLENMLA---HAL 262
                    F  +E                      T T +L++C G    +     H +
Sbjct: 271 ISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGM 330

Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
            I+ G EQ TS T      Y+ +  G   D  S    FE L++KD++SW ++I  ++  G
Sbjct: 331 VIKKGLEQVTSATNALISMYIQFPTGTMEDALS---LFESLKSKDLISWNSIITGFAQKG 387

Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
                 + F+ +  S  K D+  F  +L  CS    ++ G++   L +++ GF       
Sbjct: 388 LSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKS-GFVSNEFVI 446

Query: 383 SCLADILRRAGQVKEAMRVVSKM 405
           S L  +  + G ++ A +   ++
Sbjct: 447 SSLIVMYSKCGIIESARKCFQQI 469



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
           L H  AI+ G   +  ++ +    Y+   +GF   +  A + F+ +  +D VSW  MI  
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYI--KFGF---LGYANMLFDEMPKRDSVSWNTMISG 75

Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
           Y++ G     + LF  M +SG+  D  +F  +L   +     + G +   L+ +  G++ 
Sbjct: 76  YTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKG-GYEC 134

Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
                S L D+  +  +V++A     ++   E + V   AL+       D++ A
Sbjct: 135 NVYVGSSLVDMYAKCERVEDAFEAFKEIS--EPNSVSWNALIAGFVQVRDIKTA 186


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 219/442 (49%), Gaps = 33/442 (7%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           +A++  Y K G +D+A K F+   + +  +W+++I+GY +A    E   LF  M L    
Sbjct: 253 NALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNK 312

Query: 122 VVSWT--TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
              +T   V+  C+  G + + + I   ++  G E        + YF+           A
Sbjct: 313 PSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYE-------CQIYFM----------TA 355

Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
           ++  Y   G++  A + F+ + + ++  W +MI  YA+NG    A+ L   M   R MP+
Sbjct: 356 LVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPH 415

Query: 240 ETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
           E T  S+L +C  +    +    HA  I+ GF  E  +    +  Y          +   
Sbjct: 416 ELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG-----SLEDG 470

Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
            L F R+ ++D+++W AMI   S +G G +   LF  +    TKPD +TFV VLS CSH 
Sbjct: 471 NLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHM 530

Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH--VV 414
           GLVE+G+  F +M   +G  PR EHY+C+ DIL RAG++ E    +        DH   +
Sbjct: 531 GLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATI---DHGMCL 587

Query: 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474
              LLGACR + +  +  Y GE+L+EL    S AY+L ++++ A G  D+  +VR+ M+ 
Sbjct: 588 WRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKL 647

Query: 475 R-VKKVASFSQIEVKGKDHTLL 495
           R V K    S IE+K + H  +
Sbjct: 648 RGVNKEPGCSWIELKSQVHVFV 669



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 172/392 (43%), Gaps = 42/392 (10%)

Query: 23  PDPVSCASMITVFLRNHDLPKAEALFRAM--PESQRNIVAESAMIDGYVKAGRVDEARKV 80
           P   S   ++    R  DL K +A+   +    S  ++   +++++ Y K G + +A+ V
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 81  FDEIYEGNVYSWTSLISGYFKARQVDEG--RRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138
           F+ I   +V SW  LI+GY +   V       LF RM  +        T+  G   +G+ 
Sbjct: 68  FESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAE-------NTLPNGHTFSGVF 120

Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
                 S      GL+ +A+      ++      D+   +++I  Y   G M  A ++F+
Sbjct: 121 TAAS--SSPETFGGLQAHALAIKTSNFY------DVFVGSSLINMYCKIGCMLDARKVFD 172

Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLE 255
            +P+RN  +W  +I  YA       A +L  LM +     ++   TS+L++    + +  
Sbjct: 173 TIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHY 232

Query: 256 NMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV 308
               H LA++ G     S       +  KC C            ++ A   FE    KD 
Sbjct: 233 GKQIHCLALKNGLLSIASVGNALVTMYGKCGC------------LDDALKTFELSGDKDD 280

Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
           ++W+AMI  Y+  G   +   LF  M  +G KP E TFVGV++ CS  G +E+G++    
Sbjct: 281 ITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGY 340

Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
             +A G++ +    + L D+  + G + +A +
Sbjct: 341 SLKA-GYECQIYFMTALVDMYAKCGSLVDARK 371



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 39/175 (22%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------RAMP--------- 52
           G + +A K FD + +PD V   SMI+ + +N +   A  L+      R MP         
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 53  ---------ESQRNIVAE-------------SAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                    E  + I A+             SA+   Y K G +++   VF  +   ++ 
Sbjct: 424 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 483

Query: 91  SWTSLISGYFKARQVDEGRRLFD--RMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
           +W ++ISG  +  +  +   LF+  R      + V++  V+  C+H GL+ + +V
Sbjct: 484 TWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKV 538


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 231/470 (49%), Gaps = 45/470 (9%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           ++   + MI  Y K   ++ ARKVFDE+ E +V SW S+ISGY ++   ++ ++++  M 
Sbjct: 166 DVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAML 225

Query: 116 ---PLKLKNVVSWTTVVLGCAHNG-LIAKLEV-------------------ISWTTMCTG 152
                K  N V+  +V   C  +  LI  LEV                   I +   C  
Sbjct: 226 ACSDFK-PNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGS 284

Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
           L+       AR  F +M  KD V + A+I+ Y+  G + +A  LF+ M    + TWNAMI
Sbjct: 285 LD------YARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMI 338

Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFE 269
               +N      +     M +    PN  T +S+L   T    +      HA AIR G +
Sbjct: 339 SGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGAD 398

Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
               +T     +Y     GF L    A+  F+  + + +++WTA+I AY+ HG       
Sbjct: 399 NNIYVTTSIIDNYA--KLGFLL---GAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453

Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
           LF +M   GTKPD++T   VLS  +H+G  +  +  F+ M   Y  +P  EHY+C+  +L
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVL 513

Query: 390 RRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
            RAG++ +AM  +SKMP  P  +   V GALL    + GD+ +A +  +RL E++P ++G
Sbjct: 514 SRAGKLSDAMEFISKMPIDPIAK---VWGALLNGASVLGDLEIARFACDRLFEMEPENTG 570

Query: 448 AYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
            Y + AN++   G W+E   VR KM+R  +KK+   S IE +    + +A
Sbjct: 571 NYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIA 620



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 175/412 (42%), Gaps = 71/412 (17%)

Query: 62  SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
           S +I  Y +  R  +A  VFDEI   N +S+ +L+  Y  +R++      FD   L L  
Sbjct: 61  SKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAY-TSREM-----YFDAFSLFL-- 112

Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMC---TGLERNAMTKLAREY--FVQMP--NKDI 174
             SW   +    ++   A+ + IS + +    +G +   +  LAR+   FV     + D+
Sbjct: 113 --SW---IGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSDV 167

Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ- 233
              N MIT Y    N+  A ++F+ M +R+V +WN+MI  Y+++G      K+   M   
Sbjct: 168 FVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLAC 227

Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
           S F PN  T  S+  +C     ++  +  H   I    + + SL     C+ V   +   
Sbjct: 228 SDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSL-----CNAVIGFYAKC 282

Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHG---------------------------- 322
             ++ AR  F+ +  KD V++ A+I  Y  HG                            
Sbjct: 283 GSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLM 342

Query: 323 ---HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
              H  +V   F  M++ G++P+ +T   +L   +++  ++ G++       A+  +  A
Sbjct: 343 QNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEI-----HAFAIRNGA 397

Query: 380 EH----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
           ++     + + D   + G +  A RV       +R  +   A++ A  +HGD
Sbjct: 398 DNNIYVTTSIIDNYAKLGFLLGAQRVFDNCK--DRSLIAWTAIITAYAVHGD 447



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 58/297 (19%)

Query: 9   KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------PES------- 54
            ++ A K+FDEMS+ D VS  SMI+ + ++      + +++AM       P         
Sbjct: 182 NIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVF 241

Query: 55  ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
                                   Q ++   +A+I  Y K G +D AR +FDE+ E +  
Sbjct: 242 QACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSV 301

Query: 91  SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LI- 138
           ++ ++ISGY     V E   LF  M  +   + +W  ++ G   N            +I 
Sbjct: 302 TYGAIISGYMAHGLVKEAMALFSEM--ESIGLSTWNAMISGLMQNNHHEEVINSFREMIR 359

Query: 139 --AKLEVISWTTMCTGLERNAMTKLAREYFV----QMPNKDIVAWNAMITAYVDAGNMAQ 192
             ++   ++ +++   L  ++  K  +E          + +I    ++I  Y   G +  
Sbjct: 360 CGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLG 419

Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
           A  +F+    R++  W A+I  YA +G   +A  L + M      P++ T T++L++
Sbjct: 420 AQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSA 476



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 29/237 (12%)

Query: 11  KEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAM 64
           +E    F EM    S+P+ V+ +S++     + +L   + +  F     +  NI   +++
Sbjct: 348 EEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSI 407

Query: 65  IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NV 122
           ID Y K G +  A++VFD   + ++ +WT++I+ Y      D    LFD+M  L  K + 
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDD 467

Query: 123 VSWTTVVLGCAHNG-----------LIAKLE----VISWTTMCTGLERNAMTKLAREYFV 167
           V+ T V+   AH+G           ++ K +    V  +  M + L R      A E+  
Sbjct: 468 VTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFIS 527

Query: 168 QMPNKDIV-AWNAMITAYVDAGNMAQA----SELFNLMPQRNVWTWNAMIDRYARNG 219
           +MP   I   W A++      G++  A      LF + P+ N   +  M + Y + G
Sbjct: 528 KMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPE-NTGNYTIMANLYTQAG 583


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 226/460 (49%), Gaps = 38/460 (8%)

Query: 56  RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
           +++   + +I   V  G    A KVFDE    ++ SW SLI+GY + RQ  E   ++ +M
Sbjct: 187 KDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQM 246

Query: 116 PLK--LKNVVSWTTVVLGCAH----------------NGLIAKLEVIS----WTTMCTGL 153
             +    + V+   VV  CA                 +GL  K+ +++        C  L
Sbjct: 247 ITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDL 306

Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
           E        +  F  M  K +V+W  MI  Y   G +  A +LF+ MP++NV  WNAMI 
Sbjct: 307 EA------GKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIG 360

Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQ 270
              +      A++L   M  S   P++ T    L++C   G L+  M  H    +     
Sbjct: 361 SCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSL 420

Query: 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
           + +L       Y         ++  A   F  +  ++ ++WTA+I   + +G+       
Sbjct: 421 DVALGTALIDMYAKCG-----NMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFY 475

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F++M+ SG  PDEITF+GVL+ C H GLVE+GRK F+ M   +   P+ +HYSC+ ++L 
Sbjct: 476 FSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLG 535

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
           RAG ++EA  ++  M P E D +V GAL  AC +H ++ + +    +L++L P  SG YV
Sbjct: 536 RAGLLEEAEELIKTM-PMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYV 594

Query: 451 LSANVHAARGEWDEFAQVRK-KMERRVKKVASFSQIEVKG 489
           L AN++   G+W+E   +RK  MER V+K    S IEV G
Sbjct: 595 LLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNG 634



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 194/470 (41%), Gaps = 77/470 (16%)

Query: 22  QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAMIDGYV---------- 69
           + +P S  +  T  L N  L   E    F  + + Q  ++    ++DG+           
Sbjct: 38  KSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAI 97

Query: 70  -KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
            ++  +D   K+ + +   NV+SW ++I G  ++    +G  L+ RM  +          
Sbjct: 98  SESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRA--------- 148

Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDA 187
             GC  +             +C  L  + M        ++M  +KD+  +N +I   V  
Sbjct: 149 --GCRPDNYTYSF----LFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSV 202

Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
           G    A ++F+    R++ +WN++I+ Y R      AM +   M      P+E T   ++
Sbjct: 203 GESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVV 262

Query: 248 TSCEGMLENMLAHALAIRLGFE-----QETSLTYKCTCHYVFWDWGFQL-DVNSARLAFE 301
           ++C        A   +++LG E     +E+ L  K +      D   +  D+ + ++ F+
Sbjct: 263 SAC--------AQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFD 314

Query: 302 RLEAKDVVSWTAMILAYSNHG-------------------------------HGFQVFRL 330
            +  K VVSWT MI+ Y+ +G                                 F+   L
Sbjct: 315 NMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALEL 374

Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
           F  M  S  KPD++T +  LS CS  G ++ G  T N + + +         + L D+  
Sbjct: 375 FREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKK-HNLSLDVALGTALIDMYA 433

Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
           + G + +A++V ++MP   R+ +   A++G   L+G+V  A +   ++I+
Sbjct: 434 KCGNMTKALQVFNEMP--RRNSLTWTAIIGGLALYGNVNDAIFYFSKMID 481



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 19/222 (8%)

Query: 30  SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
           +++ ++++  DL   + LF  M   ++ +V+ + MI GY K G +D A K+F ++ E NV
Sbjct: 295 ALMDMYVKCGDLEAGKVLFDNM--RKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNV 352

Query: 90  YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC-AHNGLIAKLEVISWTT 148
            +W ++I    +A    E   LF  M  +  N+      +L C +    +  L+   WT 
Sbjct: 353 VAWNAMIGSCVQANLSFEALELFREM--QWSNMKPDKVTMLHCLSACSQLGALDTGMWT- 409

Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
                  N + K          + D+    A+I  Y   GNM +A ++FN MP+RN  TW
Sbjct: 410 ------HNYIKK-------HNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTW 456

Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
            A+I   A  G    A+   + M  S  MP+E T   +LT+C
Sbjct: 457 TAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTAC 498



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 69/287 (24%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G ++    LFD M +   VS  +MI  + +N  L  A  LF  MPE  +N+VA +AMI  
Sbjct: 304 GDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPE--KNVVAWNAMIGS 361

Query: 68  YVKAGRVDEARKVFDEIYEGNVYS----------------------W------------- 92
            V+A    EA ++F E+   N+                        W             
Sbjct: 362 CVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLD 421

Query: 93  ----TSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI-------AKL 141
               T+LI  Y K   + +  ++F+ MP   +N ++WT ++ G A  G +       +K+
Sbjct: 422 VALGTALIDMYAKCGNMTKALQVFNEMP--RRNSLTWTAIIGGLALYGNVNDAIFYFSKM 479

Query: 142 -------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA-----WNAMITAYVDAGN 189
                  + I++  + T      + +  R+YF QM ++  ++     ++ M+     AG 
Sbjct: 480 IDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGL 539

Query: 190 MAQASELFNLMP-QRNVWTWNAM-----IDRYARNGPEGAAMKLLNL 230
           + +A EL   MP + +   W A+     I R    G E AA KLL+L
Sbjct: 540 LEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIG-ERAASKLLDL 585


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 252/529 (47%), Gaps = 52/529 (9%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
           G + +A +LFD M + D V+   MI+ +++N  + +A  LF  M  +  + + +  S+ +
Sbjct: 297 GHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356

Query: 66  DGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFD-RMPLKLK 120
               +   + + +++   I       +V+  ++LI  YFK R V+  R++FD R P+   
Sbjct: 357 PLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPV--- 413

Query: 121 NVVSWTTVVLGCAHNGLIAK-LEVISWTTM----------------CTGLERNAMTKLAR 163
           ++V  T ++ G   NG+    LE+  W                   C GL    + K   
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH 473

Query: 164 EYFVQMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
            + ++  +       +A++  Y   G +  A + F  +  ++   WN+MI   ++NG   
Sbjct: 474 GHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPE 533

Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------T 272
            A+ L   M  +    +  + ++ L++C  +         HA  +R  F  +        
Sbjct: 534 EAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALI 593

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            +  KC             +++ A   F+ +E K+ VSW ++I AY NHG       LF 
Sbjct: 594 DMYSKCG------------NLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFH 641

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            ML  G +PD +TF+ ++S C HAG V++G   F  M+   G   R EHY+C+ D+  RA
Sbjct: 642 GMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRA 701

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
           G++ EA  +++ M P   D  V G LLGACRLHG+V +A+     L +L P +SG YVL 
Sbjct: 702 GRLNEAFGMINSM-PFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLL 760

Query: 453 ANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
           +NVHA  G+W+   ++R  M ER V+KV   S I+V    H  +A  R 
Sbjct: 761 SNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRS 809



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 160/381 (41%), Gaps = 38/381 (9%)

Query: 55  QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
           + ++   S++I  Y + G + +AR +FD +   +   W  +++GY K    D    +F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 115 M--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
           M       N V++  V+  CA   +I     +    + +GLE ++               
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA------------ 286

Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
                N ++  Y   G++  A  LF++MP+ ++ TWN MI  Y +NG    A  L + M 
Sbjct: 287 -----NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMI 341

Query: 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW-----DW 287
            +R  P+  T +S L         +L+    +R G E    +        VF      D 
Sbjct: 342 SARMKPDSITFSSFLP--------LLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDI 393

Query: 288 GFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
            F+  DV  AR  F++    D+V  TAMI  Y  +G       +F  +L+   + + +T 
Sbjct: 394 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 453

Query: 347 VGVLSDCSHAGLVEKGRKTF-NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
             VL  C+    +  G++   +++   +G        S + D+  + G++  A +    +
Sbjct: 454 ASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLAHQTFIGI 511

Query: 406 PPHERDHVVLGALLGACRLHG 426
              ++D V   +++ +C  +G
Sbjct: 512 S--DKDAVCWNSMITSCSQNG 530



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 147/394 (37%), Gaps = 68/394 (17%)

Query: 57  NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
           N +  + ++  YV  G   +A+ +F ++       W  +I G+    Q D     + +M 
Sbjct: 80  NGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKML 139

Query: 116 -----------PLKLKNVVSWTTVVLGCAHNGLIA----KLEVISWTTMCTGLERNAMTK 160
                      P  +K      +V LG   +  I     +L+V   +++      N    
Sbjct: 140 GCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIH 199

Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
            AR  F +MP+KD V WN M+  YV  G+   A+ +F  M  R   T             
Sbjct: 200 DARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVF--MEMRRTET------------- 244

Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQE-----T 272
                            PN  T   +L+ C  E M+      H L +  G E +     T
Sbjct: 245 ----------------NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 273 SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332
            L     C ++F           AR  F+ +   D+V+W  MI  Y  +G   +   LF 
Sbjct: 289 LLAMYAKCGHLF----------DARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFH 338

Query: 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392
            M+ +  KPD ITF   L   S    + +G++    + R  G        S L DI  + 
Sbjct: 339 EMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRN-GVSLDVFLKSALIDIYFKC 397

Query: 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
             V+ A ++  +  P   D VV  A++    L+G
Sbjct: 398 RDVEMARKIFDQRTP--VDIVVCTAMISGYVLNG 429



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 13/207 (6%)

Query: 244 TSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
            SIL +C    G+ +   AHA  +  G      L  K    YV    G  LD   A+  F
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC--GAFLD---AKNIF 104

Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
            +L       W  MI  ++  G        + +ML  GT PD+ TF  V+  C     V 
Sbjct: 105 YQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
            GR   + + +  GF+      S L       G + +A  +  +MP   +D V+   +L 
Sbjct: 165 LGRVVHDKI-QFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP--SKDGVLWNVMLN 221

Query: 421 ACRLHGDVRMAD--YIGERLIELQPSS 445
               +GD   A   ++  R  E  P+S
Sbjct: 222 GYVKNGDWDNATGVFMEMRRTETNPNS 248


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 265/544 (48%), Gaps = 77/544 (14%)

Query: 8   GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
           G   ++ ++F+++   + +S    +  F+R  +L +A  +F  MP  +R++V+ + MI G
Sbjct: 86  GTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMP--KRDVVSWNTMISG 143

Query: 68  YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
           YV  G  D+A + F E+ +  +    +++++L+S    A +   G+++   M   ++N V
Sbjct: 144 YVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASM---IRNGV 197

Query: 124 SWTTVVLGCAHNGLIAK----------------LEVISWTTMCTGLERNAMTKLAREYFV 167
             + VV+G +  G+  K                L++ SW ++     ++    LA   FV
Sbjct: 198 DLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFV 257

Query: 168 QMPN----KDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------------------- 202
            M +     D    + +IT   +  ++ +  ++F L  +                     
Sbjct: 258 LMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCN 317

Query: 203 ---------RNVWTW-----NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
                      ++ W     NAMI  YA +G    A++L  L  +    P E T + +L+
Sbjct: 318 RLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLS 377

Query: 249 SCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305
           +   +L   +    H+L ++ G E +  +       Y      F L ++SA   F ++ A
Sbjct: 378 AVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYA----KFGL-IDSAMKTFAKIGA 432

Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
           +D++SW  MI+  + +G   +   +F  +L  G  PDEIT  GVL  C+  GLV++G   
Sbjct: 433 RDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSI 492

Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
           F+ M + YG  P  EHY+C+ D++ R G++KEAM +V  M PHE   ++ G+LL AC ++
Sbjct: 493 FSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELM-PHEPSGLIWGSLLCACEIY 551

Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
           GD+R  + + ER++EL+P SS  Y++ A  +  RG W+   +VR+ M E+ V+KV   S 
Sbjct: 552 GDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSW 611

Query: 485 IEVK 488
           I +K
Sbjct: 612 IGIK 615



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 34/146 (23%)

Query: 258 LAHALAIRLGFEQETSLTYKCTCHY-----------VFWD--------WGFQL------- 291
             HA  I++GF   T L  +C   Y           VF D        W   L       
Sbjct: 58  FVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFG 117

Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
           ++  AR  F+ +  +DVVSW  MI  Y + G     FR F+ M K+G +P   T+  +LS
Sbjct: 118 ELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS 177

Query: 352 DCS--------HAGLVEKGRKTFNLM 369
             S        HA ++  G    N++
Sbjct: 178 FVSSACRGKQIHASMIRNGVDLSNVV 203



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 124/286 (43%), Gaps = 36/286 (12%)

Query: 4   FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF-RAMPESQRNI-VAE 61
           F    +++++ ++F+E+ Q D V C +MI+ +  +     A  LF   + E+ R      
Sbjct: 313 FSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTL 372

Query: 62  SAMIDGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
           S ++        VD+  ++   +     E +V   +SL+  Y K   +D   + F +  +
Sbjct: 373 SIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAK--I 430

Query: 118 KLKNVVSWTTVVLGCAHNGLIAK-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
             ++++SW T+++G A+NG ++K LE+                   +E  +  P  D + 
Sbjct: 431 GARDLISWNTMIMGLAYNGRVSKALEIF------------------KELLIGGPPPDEIT 472

Query: 177 WNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMKLLNLM 231
              ++ A    G + +   +F+ M +       +  +  ++D  +R G    AM ++ LM
Sbjct: 473 LAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELM 532

Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTY 276
                 P+     S+L +CE   +      +A R +  E ++SL Y
Sbjct: 533 PHE---PSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPY 575


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,643,430,133
Number of Sequences: 23463169
Number of extensions: 301477302
Number of successful extensions: 886343
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6565
Number of HSP's successfully gapped in prelim test: 3824
Number of HSP's that attempted gapping in prelim test: 703063
Number of HSP's gapped (non-prelim): 60427
length of query: 510
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 363
effective length of database: 8,910,109,524
effective search space: 3234369757212
effective search space used: 3234369757212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)