BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046354
(510 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 202/590 (34%), Positives = 303/590 (51%), Gaps = 101/590 (17%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G+ + A KLFDEM + D VS MI ++RN +L KA LF MPE R++ + + M+
Sbjct: 108 NGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLS 165
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY------------FKARQ---------- 104
GY + G VD+AR VFD + E N SW +L+S Y FK+R+
Sbjct: 166 GYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCL 225
Query: 105 ---------VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
+ E R+ FD M +++VVSW T++ G A +G I + +V +
Sbjct: 226 LGGFVKKKKIVEARQFFDSM--NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283
Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
WT M +G +N M + ARE F +MP ++ V+WNAM+ YV M A ELF++MP RNV
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV 343
Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLM---------------------FQSRFM------- 237
TWN MI YA+ G A L + M F++ +
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE 403
Query: 238 ---PNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ-----ETSLTYKCTCHYVFWD 286
N ++ +S L++C ++ L L RL G+E L C C
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG----- 458
Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
+ A F+ + KD+VSW MI YS HG G R F M + G KPD+ T
Sbjct: 459 -----SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
V VLS CSH GLV+KGR+ F M++ YG P ++HY+C+ D+L RAG +++A ++ M
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM- 572
Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
P E D + G LLGA R+HG+ +A+ +++ ++P +SG YVL +N++A+ G W +
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632
Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
++R +M ++ VKKV +S IE++ K HT P ++ + L+E+D
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 187/431 (43%), Gaps = 81/431 (18%)
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
I Y++ GR +EA +VF + + S+ +ISGY + + + R+LFD MP +++VS
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP--ERDLVS 128
Query: 125 WTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
W ++ G N + K +V SW TM +G +N AR F +MP K+
Sbjct: 129 WNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND 188
Query: 175 VAWNAMITAYVDAGNM-------------------------------AQASELFNLMPQR 203
V+WNA+++AYV M +A + F+ M R
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR 248
Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN------- 256
+V +WN +I YA++G A +L F + + T T++++ G ++N
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQL----FDESPVQDVFTWTAMVS---GYIQNRMVEEAR 301
Query: 257 ----------------MLA-HALAIRLGFEQETSLTYKC----TCHYVFWDWGFQLDVNS 295
MLA + R+ +E C T + + + ++
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361
Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
A+ F+++ +D VSW AMI YS GH F+ RLF +M + G + + +F LS C+
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421
Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
+E G++ + + G++ + L + + G ++EA + +M +D V
Sbjct: 422 VVALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG--KDIVSW 478
Query: 416 GALLGACRLHG 426
++ HG
Sbjct: 479 NTMIAGYSRHG 489
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 161/369 (43%), Gaps = 79/369 (21%)
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
+ ++ W IS Y + + +E R+F RMP W++V ++NG+I
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMP-------RWSSV----SYNGMI------- 102
Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
+G RN +LAR+ F +MP +D+V+WN MI YV N+ +A ELF +MP+R+V
Sbjct: 103 -----SGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157
Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIR 265
+WN M+ YA+NG A + + M + N+ + ++L++ ++
Sbjct: 158 CSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSA-------------YVQ 200
Query: 266 LGFEQETSLTYKCTCHYVFWDW-----GF--QLDVNSARLAFERLEAKDVVSWTAMILAY 318
+E + +K ++ W GF + + AR F+ + +DVVSW +I Y
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260
Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF-----------N 367
+ G + +LF D T+ ++S +VE+ R+ F N
Sbjct: 261 AQSGKIDEARQLF----DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN 316
Query: 368 LMSRAYGFKPRAEHYSCLADIL---------------RRAGQVKEAMRVVSKMPPHERDH 412
M Y R E L D++ + G++ EA + KMP +RD
Sbjct: 317 AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP--KRDP 374
Query: 413 VVLGALLGA 421
V A++
Sbjct: 375 VSWAAMIAG 383
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 183/526 (34%), Positives = 295/526 (56%), Gaps = 33/526 (6%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G++ EA K+FD M + + VS +++ ++ N + AE+LF MPE +N V+ + M+
Sbjct: 92 NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE--KNKVSWTVMLI 149
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
G+++ GR+D+A K+++ I + + + TS+I G K +VDE R +FD M ++V++WT
Sbjct: 150 GFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM--SERSVITWT 207
Query: 127 TVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
T+V G N + K EV SWT+M G +N + A E F MP K ++
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSMLMGYVQNGRIEDAEELFEVMPVKPVI 266
Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
A NAMI+ G +A+A +F+ M +RN +W +I + RNG E A+ L LM +
Sbjct: 267 ACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQG 326
Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
P T SIL+ C + HA +R F+ + + Y+ +
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG-----E 381
Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLS 351
+ ++L F+R +KD++ W ++I Y++HG G + ++F M SG TKP+E+TFV LS
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLS 441
Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
CS+AG+VE+G K + M +G KP HY+C+ D+L RAG+ EAM ++ M E D
Sbjct: 442 ACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPD 500
Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
V G+LLGACR H + +A++ ++LIE++P +SG Y+L +N++A++G W + A++RK
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560
Query: 472 MERR-VKKVASFSQIEVKGKDHTLL------APMREMGYVVLKEVD 510
M+ R V+K S EV+ K H P +E +L E+D
Sbjct: 561 MKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 177/400 (44%), Gaps = 60/400 (15%)
Query: 70 KAGRVDEARKVFDEIYEGNVYSWTSLISGYF----------------------------- 100
+ G++ EARK+FD ++ SW S+++GYF
Sbjct: 29 RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSG 88
Query: 101 --KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV----------ISWTT 148
K ++DE R++FD MP +NVVSWT +V G HNG + E +SWT
Sbjct: 89 YMKNGEIDEARKVFDLMP--ERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTV 146
Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
M G ++ A + + +P+KD +A +MI G + +A E+F+ M +R+V TW
Sbjct: 147 MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITW 206
Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRL 266
M+ Y +N A K+ ++M + E + TS+L G +E+ A L
Sbjct: 207 TTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIED--AEEL---- 256
Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
FE + C+ + G + ++ AR F+ ++ ++ SW +I + +G +
Sbjct: 257 -FEV-MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314
Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
LF M K G +P T + +LS C+ + G++ + R F S L
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLM 373
Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
+ + G++ ++ + + P +D ++ +++ HG
Sbjct: 374 TMYIKCGELVKSKLIFDRFP--SKDIIMWNSIISGYASHG 411
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 30/263 (11%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
+G +V +A K+FD M + VS SM+ +++N + AE LF MP + ++A +A
Sbjct: 213 YGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP--VKPVIACNA 270
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
MI G + G + +AR+VFD + E N SW ++I + + E LF M K V
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ---KQGV 327
Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLE-----RNAMTKLAREYFVQMPNKDIVAWN 178
T L IS ++C L + +L R F + D+ +
Sbjct: 328 RPTFPTL-------------ISILSVCASLASLHHGKQVHAQLVRCQF----DVDVYVAS 370
Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFM 237
++T Y+ G + ++ +F+ P +++ WN++I YA +G A+K+ M
Sbjct: 371 VLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTK 430
Query: 238 PNETTCTSILTSCE--GMLENML 258
PNE T + L++C GM+E L
Sbjct: 431 PNEVTFVATLSACSYAGMVEEGL 453
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 48/285 (16%)
Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
T L R AR+ F +K I +WN+M+ Y A +LF+ MP RN+ +WN
Sbjct: 25 THLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNG 84
Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM---LAHAL----- 262
++ Y +NG A K+ +LM + N + T+++ +G + N +A +L
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPER----NVVSWTALV---KGYVHNGKVDVAESLFWKMP 137
Query: 263 --------AIRLGFEQETSLTYKCTCHYVFWD----------WGF--QLDVNSARLAFER 302
+ +GF Q+ + C + + D G + V+ AR F+
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDE 197
Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
+ + V++WT M+ Y + ++F M + E+++ +L G +E
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDA 253
Query: 363 RKTFNLMSRAYGFKPRAEHYSCLADI--LRRAGQVKEAMRVVSKM 405
+ F +M P +C A I L + G++ +A RV M
Sbjct: 254 EELFEVM-------PVKPVIACNAMISGLGQKGEIAKARRVFDSM 291
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/506 (33%), Positives = 283/506 (55%), Gaps = 28/506 (5%)
Query: 8 GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G ++EA +LFD + S+ + V+ +M++ +LR+ L AE LF+ MPE RN+V+ + MID
Sbjct: 91 GDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE--RNVVSWNTMID 148
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
GY ++GR+D+A ++FDE+ E N+ SW S++ + ++DE LF+RMP + +VVSWT
Sbjct: 149 GYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR--DVVSWT 206
Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
+V G A NG + + +ISW M TG +N A + F MP +D +
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFAS 266
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-R 235
WN MIT ++ M +A LF+ MP++NV +W MI Y N A+ + + M +
Sbjct: 267 WNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGS 326
Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
PN T SIL++C G++E H L + ++ +T Y +
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMY-----SKSGE 381
Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
+ +AR F+ + +D++SW +MI Y++HGHG + ++ +M K G KP +T++ +L
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441
Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
CSHAGLVEKG + F + R R EHY+CL D+ RAG++K+ ++
Sbjct: 442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFIN-CDDARL 500
Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
GA+L AC +H +V +A + ++++E +G YVL +N++AA G+ +E A++R
Sbjct: 501 SRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRM 560
Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLL 495
KM E+ +KK S ++V ++H +
Sbjct: 561 KMKEKGLKKQPGCSWVKVGKQNHLFV 586
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 196/382 (51%), Gaps = 39/382 (10%)
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
+I K G++ EARK+FD + E +V +WT +I+GY K + E R LFDR+ + KNVV
Sbjct: 52 LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSR-KNVV 110
Query: 124 SWTTVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
+WT +V G + ++ E V+SW TM G ++ A E F +MP ++
Sbjct: 111 TWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERN 170
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
IV+WN+M+ A V G + +A LF MP+R+V +W AM+D A+NG A +L + M +
Sbjct: 171 IVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE 230
Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW-----G 288
N + +++T +A R+ E ++ F W G
Sbjct: 231 R----NIISWNAMIT----------GYAQNNRI---DEADQLFQVMPERDFASWNTMITG 273
Query: 289 F--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEIT 345
F ++N A F+R+ K+V+SWT MI Y + + +F++ML+ G+ KP+ T
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGT 333
Query: 346 FVGVLSDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
+V +LS CS AGLVE G++ L+S++ K S L ++ ++G++ A ++
Sbjct: 334 YVSILSACSDLAGLVE-GQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARKMFDN 391
Query: 405 MPPHERDHVVLGALLGACRLHG 426
+RD + +++ HG
Sbjct: 392 GLVCQRDLISWNSMIAVYAHHG 413
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 159/318 (50%), Gaps = 64/318 (20%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
+ +G++ +A +LFDEM + + VS SM+ ++ + +A LF MP +R++V+ +A
Sbjct: 150 YAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMP--RRDVVSWTA 207
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
M+DG K G+VDEAR++FD + E N+ SW ++I+GY + ++DE +LF MP ++
Sbjct: 208 MVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMP--ERDFA 265
Query: 124 SWTTVVLGCAHN-------GLIAKL---EVISWTTMCTGLERNAMTKLAREYFVQM---- 169
SW T++ G N GL ++ VISWTTM TG N + A F +M
Sbjct: 266 SWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDG 325
Query: 170 ---PN---------------------------------KDIVAWNAMITAYVDAGNMAQA 193
PN K+ + +A++ Y +G + A
Sbjct: 326 SVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAA 385
Query: 194 SELFN--LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
++F+ L+ QR++ +WN+MI YA +G A+++ N M + F P+ T ++L +C
Sbjct: 386 RKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFAC- 444
Query: 252 GMLENMLAHALAIRLGFE 269
+HA + G E
Sbjct: 445 -------SHAGLVEKGME 455
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 280/536 (52%), Gaps = 53/536 (9%)
Query: 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
S + G KEA +LFDEMS+ + VS +++ +++N + +A +F MPE RN+V+
Sbjct: 55 VSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE--RNVVS 112
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
+AM+ GY++ G V EA +F + E N SWT + G ++D+ R+L+D MP+K
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV 172
Query: 119 ---------------------------LKNVVSWTTVVLGCAHNGLI-----------AK 140
+NVV+WTT++ G N + K
Sbjct: 173 VASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK 232
Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
EV SWT+M G + + A E+F MP K ++A NAMI + + G +++A +F+LM
Sbjct: 233 TEV-SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLM 291
Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NM 257
R+ TW MI Y R G E A+ L M + P+ + SIL+ C +
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGR 351
Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
HA +R F+ + + YV ++ A+L F+R +KD++ W ++I
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCG-----ELVKAKLVFDRFSSKDIIMWNSIISG 406
Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
Y++HG G + ++F M SGT P+++T + +L+ CS+AG +E+G + F M + P
Sbjct: 407 YASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTP 466
Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
EHYSC D+L RAGQV +AM ++ M + D V GALLGAC+ H + +A+ ++
Sbjct: 467 TVEHYSCTVDMLGRAGQVDKAMELIESMTI-KPDATVWGALLGACKTHSRLDLAEVAAKK 525
Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
L E +P ++G YVL ++++A+R +W + A VRK M V K S IEV K H
Sbjct: 526 LFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVH 581
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 78/409 (19%)
Query: 70 KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
+ G+++EARK FD + + SW S++SGYF E R+LFD M +NVVSW
Sbjct: 29 RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM--SERNVVSW---- 82
Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
NGL+ +G +N M AR F MP +++V+W AM+ Y+ G
Sbjct: 83 -----NGLV------------SGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGM 125
Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM------------------ 231
+ +A LF MP+RN +W M +G A KL ++M
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCRE 185
Query: 232 ---------FQSRFMPNETTCTSILTS-------------CEGMLEN--------MLAHA 261
F N T T+++T E M E +L +
Sbjct: 186 GRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYT 245
Query: 262 LAIRL----GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
L+ R+ F + + C+ + +G +++ AR F+ +E +D +W MI A
Sbjct: 246 LSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKA 305
Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
Y G + LFA+M K G +P + + +LS C+ ++ GR+ + R F
Sbjct: 306 YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQ-FDD 364
Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
S L + + G++ +A V + +D ++ +++ HG
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLVFDRFS--SKDIIMWNSIISGYASHG 411
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352
+N AR F+ L+ K + SW +++ Y ++G + +LF M ++ + +++ G++S
Sbjct: 33 INEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM----SERNVVSWNGLVSG 88
Query: 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDH 412
++ + R F LM + ++ + + G V EA + +MP ER+
Sbjct: 89 YIKNRMIVEARNVFELMP-----ERNVVSWTAMVKGYMQEGMVGEAESLFWRMP--ERNE 141
Query: 413 ----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
V+ G L+ R+ ++ D + + + + G V AR +DE +
Sbjct: 142 VSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRE 200
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/468 (33%), Positives = 253/468 (54%), Gaps = 47/468 (10%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
SA++D Y K G V++A++VFDE+ + NV SW SLI+ + + E +F M
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 116 --PLKLKNVVS----WTTVVLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLARE 164
+ L +V+S + + +G +G + K + +I + + K AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
F MP ++++A +MI+ Y A + A +F M +RNV +WNA+I Y +NG A
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET--------- 272
+ L L+ + P + +IL +C + E M AH ++ GF+ ++
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
+ KC C V L F ++ +D VSW AMI+ ++ +G+G +
Sbjct: 431 NSLIDMYVKCGC------------VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
LF ML+SG KPD IT +GVLS C HAG VE+GR F+ M+R +G P +HY+C+ D+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
L RAG ++EA ++ +M P + D V+ G+LL AC++H ++ + Y+ E+L+E++PS+SG
Sbjct: 539 LGRAGFLEEAKSMIEEM-PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597
Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
YVL +N++A G+W++ VRK M + V K S I+++G DH +
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 188/429 (43%), Gaps = 85/429 (19%)
Query: 58 IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
I ++ +ID Y K G +++ R+VFD++ + N+Y+W S+++G K +DE LF MP
Sbjct: 55 IFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP- 113
Query: 118 KLKNVVSWTTVVLGCAHNG-----------------LIAKLEVISWTTMCTGLERNAMTK 160
++ +W ++V G A + ++ + S + C+GL N M K
Sbjct: 114 -ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGL--NDMNK 170
Query: 161 -------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
+A+ F+ D+ +A++ Y GN+ A +F+ M RNV +WN++I
Sbjct: 171 GVQVHSLIAKSPFLS----DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLIT 226
Query: 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE-- 271
+ +NGP A+ + +M +SR P+E T S++++C A AI++G E
Sbjct: 227 CFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISAC--------ASLSAIKVGQEVHGR 278
Query: 272 -----------------TSLTYKCT----CHYVF---------------WDWGFQLDVNS 295
+ KC+ ++F + +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
ARL F ++ ++VVSW A+I Y+ +G + LF + + P +F +L C+
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 356 AGLVEKGRKT-FNLMSRAYGFKPRAEHY----SCLADILRRAGQVKEAMRVVSKMPPHER 410
+ G + +++ + F+ E + L D+ + G V+E V KM ER
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM--MER 456
Query: 411 DHVVLGALL 419
D V A++
Sbjct: 457 DCVSWNAMI 465
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 131/275 (47%), Gaps = 14/275 (5%)
Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
N + + +I + C LE R+ F +MP ++I WN+++T G + +A
Sbjct: 53 NEIFIQNRLIDAYSKCGSLED------GRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEAD 106
Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-- 252
LF MP+R+ TWN+M+ +A++ A+ +M + F+ NE + S+L++C G
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166
Query: 253 -MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
M + + H+L + F + + Y +VN A+ F+ + ++VVSW
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-----NVNDAQRVFDEMGDRNVVSW 221
Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
++I + +G + +F ML+S +PDE+T V+S C+ ++ G++ + +
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
+ + D+ + ++KEA + MP
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 127/305 (41%), Gaps = 64/305 (20%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
G V +A ++FDEM + VS S+IT F +N +A +F+ M ES
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 55 -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
+ +I+ +A +D Y K R+ EAR +FD + NV
Sbjct: 261 SACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNV 320
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG---------LIAK 140
+ TS+ISGY A R +F +M +NVVSW ++ G NG + K
Sbjct: 321 IAETSMISGYAMAASTKAARLMFTKMA--ERNVVSWNALIAGYTQNGENEEALSLFCLLK 378
Query: 141 LEVISWTTMCTGLERNAMTKLAREY---------------FVQMPNKDIVAWNAMITAYV 185
E + T A LA + F DI N++I YV
Sbjct: 379 RESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438
Query: 186 DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
G + + +F M +R+ +WNAMI +A+NG A++L M +S P+ T
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIG 498
Query: 246 ILTSC 250
+L++C
Sbjct: 499 VLSAC 503
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 160/486 (32%), Positives = 256/486 (52%), Gaps = 42/486 (8%)
Query: 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFDEIYEGNV 89
+I +R+ D+ A +F M +N + ++++ G K R+ EA ++FDEI E +
Sbjct: 67 IIARCVRSGDIDGALRVFHGM--RAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-------- 141
+S+ ++S Y + ++ + FDRMP K + SW T++ G A G + K
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFK--DAASWNTMITGYARRGEMEKARELFYSMM 182
Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
+SW M +G + A +F P + +VAW AMIT Y+ A + A +F
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242
Query: 200 MP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
M +N+ TWNAMI Y N +KL M + PN + +S L C +
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS---- 298
Query: 259 AHALAIRLGFEQETSLTYKCTCHYV---------FWDWGFQLDVNSARLAFERLEAKDVV 309
A++LG + ++ C+ V + G ++ A FE ++ KDVV
Sbjct: 299 ----ALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCG---ELGDAWKLFEVMKKKDVV 351
Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
+W AMI Y+ HG+ + LF M+ + +PD ITFV VL C+HAGLV G F M
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESM 411
Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGD 427
R Y +P+ +HY+C+ D+L RAG+++EA++++ MP PH V G LLGACR+H +
Sbjct: 412 VRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA---AVFGTLLGACRVHKN 468
Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
V +A++ E+L++L ++ YV AN++A++ W++ A+VRK+M E V KV +S IE
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528
Query: 487 VKGKDH 492
++ K H
Sbjct: 529 IRNKVH 534
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 54/292 (18%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
++ EA +LFDE+ +PD S M++ ++RN + KA++ F MP ++ + + MI GY
Sbjct: 108 RMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP--FKDAASWNTMITGY 165
Query: 69 VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
+ G +++AR++F + E N SW ++ISGY + +++ F P ++ VV+WT +
Sbjct: 166 ARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAP--VRGVVAWTAM 223
Query: 129 VLG-----------CAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM------PN 171
+ G + +++W M +G N+ + + F M PN
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283
Query: 172 ---------------------------------KDIVAWNAMITAYVDAGNMAQASELFN 198
D+ A ++I+ Y G + A +LF
Sbjct: 284 SSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFE 343
Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
+M +++V WNAMI YA++G A+ L M ++ P+ T ++L +C
Sbjct: 344 VMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLAC 395
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 31/262 (11%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G +++A+ F V+ +MIT +++ + AEA+F+ M +N+V +AMI G
Sbjct: 200 GDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT-VNKNLVTWNAMISG 258
Query: 68 YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
YV+ R ++ K+F + E N +S + G + + GR ++ +V
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR--------QIHQIV 310
Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
S +T+ N + A +IS C L A + F M KD+VAWNAMI+
Sbjct: 311 SKSTLC-----NDVTALTSLISMYCKCGELGD------AWKLFEVMKKKDVVAWNAMISG 359
Query: 184 YVDAGNMAQASELFNLMPQRNV---W-TWNAMIDRYARNGPEGAAMKLLNLM---FQSRF 236
Y GN +A LF M + W T+ A++ G M M ++
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419
Query: 237 MPNETTCTSILTSCEGMLENML 258
P+ TC L G LE L
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEAL 441
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIV 59
S + G++ +A KLF+ M + D V+ +MI+ + ++ + KA LFR M +++ + +
Sbjct: 327 SMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWI 386
Query: 60 AESAMIDGYVKAGRVDEARKVFDEI-----YEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
A++ AG V+ F+ + E +T ++ +A +++E +L
Sbjct: 387 TFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRS 446
Query: 115 MPLK 118
MP +
Sbjct: 447 MPFR 450
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 276/542 (50%), Gaps = 64/542 (11%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
++ EA ++F+++ P MIT + R++ L A LF MP R++V+ ++MI G
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP--VRDVVSWNSMISGC 107
Query: 69 VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
V+ G ++ A K+FDE+ E +V SWT++++G F++ +VD+ RLF +MP +K+ +W ++
Sbjct: 108 VECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMP--VKDTAAWNSM 165
Query: 129 VLGCAHNGLI---AKL-------EVISWTTMCTGLERNAMTKLAREYFVQM--------- 169
V G G + KL VISWTTM GL++N + A + F M
Sbjct: 166 VHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTS 225
Query: 170 -PNKDIVAWNA-----------------------------MITAYVDAGNMAQASELFNL 199
P ++ A +IT Y + + + ++F+
Sbjct: 226 RPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDE 285
Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-N 256
V W A++ Y+ N A+ + + M ++ +PN++T S L SC G L+
Sbjct: 286 KVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG 345
Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
H +A++LG E + + Y D G +VN A F ++ K +VSW ++I+
Sbjct: 346 KEMHGVAVKLGLETDAFVGNSLVVMYS--DSG---NVNDAVSVFIKIFKKSIVSWNSIIV 400
Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
+ HG G F +F +M++ +PDEITF G+LS CSH G +EKGRK F MS
Sbjct: 401 GCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHI 460
Query: 377 PRA-EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
R +HY+C+ DIL R G++KEA ++ +M + V L ALL ACR+H DV +
Sbjct: 461 DRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWL-ALLSACRMHSDVDRGEKAA 519
Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
+ L SS AYVL +N++A+ G W +++R KM++ + K S + ++GK H
Sbjct: 520 AAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEF 579
Query: 495 LA 496
+
Sbjct: 580 FS 581
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 188/397 (47%), Gaps = 33/397 (8%)
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
+I ++ + R+DEAR+VF+++ +V +T +I+GY ++ ++ + LFD MP++ +VV
Sbjct: 41 LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVR--DVV 98
Query: 124 SWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
SW +++ GC G + + V+SWT M G R+ A F QMP KD
Sbjct: 99 SWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKD 158
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
AWN+M+ Y+ G + A +LF MP +NV +W MI +N G A+ L M +
Sbjct: 159 TAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLR 218
Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQE-----TSLTYKCTCHYVFW 285
T ++T+C + H L I+LGF E + +T+ C
Sbjct: 219 CCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCK---- 274
Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
+ +R F+ + V WTA++ YS + +F+ ML++ P++ T
Sbjct: 275 ------RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQST 328
Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
F L+ CS G ++ G++ + + G + A + L + +G V +A+ V K+
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI 387
Query: 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
++ V +++ C HG + A I ++I L
Sbjct: 388 --FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLN 422
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 172/538 (31%), Positives = 262/538 (48%), Gaps = 82/538 (15%)
Query: 10 VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
++EA KLFDEM D S +MI+ + +N + +A LF MPE RN V+ SAMI G+
Sbjct: 121 LEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPE--RNAVSWSAMITGFC 178
Query: 70 KAGRVDEARKVFDEI-------------------------------------YEGNVYSW 92
+ G VD A +F ++ E VY++
Sbjct: 179 QNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAY 238
Query: 93 TSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVVSWTTVVLGCAHNGLI- 138
+LI GY + QV+ R LFD++P KNVVSW +++ G +
Sbjct: 239 NTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVV 298
Query: 139 -AKL--------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
A+L + ISW TM G + + A F +MPN+D +WN M++ Y GN
Sbjct: 299 SARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGN 358
Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
+ A F P+++ +WN++I Y +N A+ L M P+ T TS+L++
Sbjct: 359 VELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSA 418
Query: 250 CEGMLE---NMLAHALAIRLGFE----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
G++ M H + ++ +T C ++ +R F+
Sbjct: 419 STGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG----------EIMESRRIFDE 468
Query: 303 LEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
++ K +V++W AMI Y+ HG+ + LF M +G P ITFV VL+ C+HAGLV++
Sbjct: 469 MKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDE 528
Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
+ F M Y +P+ EHYS L ++ GQ +EAM +++ M P E D V GALL A
Sbjct: 529 AKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSM-PFEPDKTVWGALLDA 587
Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
CR++ +V +A E + L+P SS YVL N++A G WDE +QVR ME +R+KK
Sbjct: 588 CRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKK 645
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 172/392 (43%), Gaps = 60/392 (15%)
Query: 60 AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
A + ++ +++G + EAR +F+++ N +W ++ISGY K R++++ R+LFD MP
Sbjct: 42 ATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP--K 99
Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
++VV+W T++ G G I LE AR+ F +MP++D +WN
Sbjct: 100 RDVVTWNTMISGYVSCGGIRFLEE------------------ARKLFDEMPSRDSFSWNT 141
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
MI+ Y + +A LF MP+RN +W+AMI + +NG +A+ L R MP
Sbjct: 142 MISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLF------RKMPV 195
Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLG-----FEQETSLTYKCTCHYVFWDWGFQLDVN 294
+ + + + G+++N A LG L Y V +G + V
Sbjct: 196 KDS-SPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIV--GYGQRGQVE 252
Query: 295 SARLAFERLE---------------AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
+AR F+++ K+VVSW +MI AY G LF +M
Sbjct: 253 AARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQM----K 308
Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
D I++ ++ H +E F+ M A ++ + G V+ A
Sbjct: 309 DRDTISWNTMIDGYVHVSRMEDAFALFSEMP-----NRDAHSWNMMVSGYASVGNVELAR 363
Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
K P E+ V +++ A + D + A
Sbjct: 364 HYFEKTP--EKHTVSWNSIIAAYEKNKDYKEA 393
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 19/245 (7%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G V A LFD+M D +S +MI ++ + A ALF MP R+ + + M+
Sbjct: 294 VGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMP--NRDAHSWNMMVS 351
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
GY G V+ AR F++ E + SW S+I+ Y K + E LF RM ++ + T
Sbjct: 352 GYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHT 411
Query: 127 TVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
L A GL+ + G++ + + V+ D+ NA+IT Y
Sbjct: 412 LTSLLSASTGLV---------NLRLGMQMHQIV-------VKTVIPDVPVHNALITMYSR 455
Query: 187 AGNMAQASELFNLMP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245
G + ++ +F+ M +R V TWNAMI YA +G A+ L M + P+ T S
Sbjct: 456 CGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
Query: 246 ILTSC 250
+L +C
Sbjct: 516 VLNAC 520
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 232/444 (52%), Gaps = 37/444 (8%)
Query: 57 NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
+I +A+ID Y + G V +A K+F+++ E + SW S++ G KA ++ + RRLFD
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210
Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
MP + ++ISW TM G R A E F +MP ++
Sbjct: 211 MPQR-----------------------DLISWNTMLDGYARCREMSKAFELFEKMPERNT 247
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
V+W+ M+ Y AG+M A +F+ MP +NV TW +I YA G A +L++ M
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
S + SIL +C G+L M H++ R + Y
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG--- 364
Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
++ A F + KD+VSW M+ HGHG + LF+RM + G +PD++TF+ V
Sbjct: 365 --NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAV 422
Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
L C+HAGL+++G F M + Y P+ EHY CL D+L R G++KEA++VV M P E
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM-PME 481
Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
+ V+ GALLGACR+H +V +A + + L++L P G Y L +N++AA +W+ A +R
Sbjct: 482 PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIR 541
Query: 470 KKMERR-VKKVASFSQIEVKGKDH 492
KM+ V+K + S +E++ H
Sbjct: 542 SKMKSMGVEKPSGASSVELEDGIH 565
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 147/264 (55%), Gaps = 21/264 (7%)
Query: 6 CTG-KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
C G V++A KLF++MS+ D VS SM+ ++ +L A LF MP QR++++ + M
Sbjct: 165 CGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP--QRDLISWNTM 222
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
+DGY + + +A ++F+++ E N SW++++ GY KA ++ R +FD+MPL KNVV+
Sbjct: 223 LDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVT 282
Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA----------------REYFVQ 168
WT ++ G A GL+ + + + + +GL+ +A ++ ++
Sbjct: 283 WTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK 342
Query: 169 MPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
N A+ NA++ Y GN+ +A ++FN +P++++ +WN M+ +G A++
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402
Query: 227 LLNLMFQSRFMPNETTCTSILTSC 250
L + M + P++ T ++L SC
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSC 426
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
N A F +++ +V ++I A++ + +Q F +F+ M + G D T+ +L C
Sbjct: 68 NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPPHERD 411
S + + N + + G + L D R G V++AM++ KM ERD
Sbjct: 128 SGQSWLPVVKMMHNHIEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM--SERD 184
Query: 412 HVVLGALLGACRLHGDVRMA 431
V ++LG G++R A
Sbjct: 185 TVSWNSMLGGLVKAGELRDA 204
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/577 (28%), Positives = 274/577 (47%), Gaps = 107/577 (18%)
Query: 12 EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE---------- 61
+A +LF ++ + + VS A+MIT F+R +AE L+ P R+ VA
Sbjct: 131 KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRA 190
Query: 62 ---------------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
S+M+ GY K GR+ +AR +FD + E NV +WT++I GYF
Sbjct: 191 GKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250
Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVL-------------GCAHNGLIAKL------ 141
KA ++G LF RM + V+ T+ + G +GL++++
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDL 310
Query: 142 -----------------------------EVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
+ +SW ++ TGL + A E F +MP K
Sbjct: 311 FLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK 370
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
D+V+W MI + G +++ ELF +MP+++ TW AMI + NG A+ + M
Sbjct: 371 DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKML 430
Query: 233 QSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSL-----TYKCTCHYVF 284
Q PN T +S+L+ S ++E + H +++ + S+ + C C
Sbjct: 431 QKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCG--- 487
Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
+ N A F + ++VS+ MI YS +G G + +LF+ + SG +P+ +
Sbjct: 488 -------NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGV 540
Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
TF+ +LS C H G V+ G K F M +Y +P +HY+C+ D+L R+G + +A ++S
Sbjct: 541 TFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIST 600
Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-- 460
MP PH V G+LL A + H V +A+ ++LIEL+P S+ YV+ + +++ G
Sbjct: 601 MPCKPHSG---VWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKN 657
Query: 461 -EWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
+ D ++K +R+KK S I +KG+ H LA
Sbjct: 658 RDCDRIMNIKK--SKRIKKDPGSSWIILKGEVHNFLA 692
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 175/412 (42%), Gaps = 59/412 (14%)
Query: 28 CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG 87
C S I+ RN +L +AEA+FR M S R+IV+ AMI Y + G++ +A +VFDE+
Sbjct: 53 CNSQISKHARNGNLQEAEAIFRQM--SNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVR 110
Query: 88 NVYSWTSLISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV--- 143
S+ ++I+ K + + + LF +P K N VS+ T++ G G + E
Sbjct: 111 VTTSYNAMITAMIKNKCDLGKAYELFCDIPEK--NAVSYATMITGFVRAGRFDEAEFLYA 168
Query: 144 ---------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
++ + +G R A F M K++V+ ++M+ Y G + A
Sbjct: 169 ETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228
Query: 195 ELFNLMPQRNVWTWNAMIDRYARNG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
LF+ M +RNV TW AMID Y + G +G + L + + N T + +C
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL-FLRMRQEGDVKVNSNTLAVMFKACRD 287
Query: 253 ML---ENMLAHALAIRLGFEQE-----------TSLTYKCTCHYVFW--------DWGFQ 290
+ E H L R+ E + + L Y VF W
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSL 347
Query: 291 L-------DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
+ ++ A FE++ KD+VSWT MI +S G + LF M + D
Sbjct: 348 ITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM----PEKDN 403
Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLM------SRAYGFKPRAEHYSCLADIL 389
IT+ ++S G E+ F+ M +Y F + LAD++
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLI 455
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 21/251 (8%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
S + G + EA +F M D VS S+IT ++ + +A LF MP +++V+
Sbjct: 318 SMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMP--GKDMVSW 375
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L 119
+ MI G+ G + + ++F + E + +WT++IS + +E F +M K
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVC 435
Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
N ++++V+ A S + GL+ + ++ + V D+ N+
Sbjct: 436 PNSYTFSSVLSATA-----------SLADLIEGLQIHG--RVVKMNIVN----DLSVQNS 478
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
+++ Y GN A ++F+ + + N+ ++N MI Y+ NG A+KL +++ S PN
Sbjct: 479 LVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPN 538
Query: 240 ETTCTSILTSC 250
T ++L++C
Sbjct: 539 GVTFLALLSAC 549
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 241 bits (616), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 235/458 (51%), Gaps = 30/458 (6%)
Query: 60 AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
E+ +D Y GR++ AR VFDE+ +V +W ++I Y + VDE +LF+ M K
Sbjct: 148 VETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEM--KD 205
Query: 120 KNVVS----WTTVVLGCAHNG-----------LI---AKLEVISWTTMCTGLERNAMTKL 161
NV+ +V C G LI +++ T + T +
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDM 265
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
ARE+F +M +++ AM++ Y G + A +F+ ++++ W MI Y +
Sbjct: 266 AREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYP 325
Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQETSLTYKC 278
A+++ M S P+ + S++++C G+L+ H+ G E E S+
Sbjct: 326 QEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNAL 385
Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
Y +++ R FE++ ++VVSW++MI A S HG LFARM +
Sbjct: 386 INMYAKCG-----GLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN 440
Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
+P+E+TFVGVL CSH+GLVE+G+K F M+ Y P+ EHY C+ D+ RA ++EA
Sbjct: 441 VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500
Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
+ V+ MP + V+ G+L+ ACR+HG++ + + +R++EL+P GA VL +N++A
Sbjct: 501 LEVIESMPV-ASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAR 559
Query: 459 RGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
W++ +R+ ME + V K S+I+ GK H L
Sbjct: 560 EQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFL 597
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 37/304 (12%)
Query: 29 ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
+++T++ + A FR M S RN+ +AM+ GY K GR+D+A+ +FD+ + +
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKM--SVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
+ WT++IS Y ++ E R+F+ M +VVS +V+ CA+ G++ K + +
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHS 368
Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
GLE ++ NA+I Y G + ++F MP+RNV
Sbjct: 369 CIHVNGLE-----------------SELSINNALINMYAKCGGLDATRDVFEKMPRRNVV 411
Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
+W++MI+ + +G A+ L M Q PNE T +L C +H+ +
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGC--------SHSGLVEE 463
Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLE----AKDVVSWTAMILAY 318
G + S+T + +G +D+ N R A E +E A +VV W +++ A
Sbjct: 464 GKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523
Query: 319 SNHG 322
HG
Sbjct: 524 RIHG 527
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
G + +F++M + + VS +SMI + + A +LF M + + N V ++
Sbjct: 393 GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVL 452
Query: 66 DGYVKAGRVDEARKVFDEIY-EGNVYS----WTSLISGYFKARQVDEGRRLFDRMPLKLK 120
G +G V+E +K+F + E N+ + ++ + +A + E + + MP+
Sbjct: 453 YGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVA-S 511
Query: 121 NVVSWTTVVLGCAHNG 136
NVV W +++ C +G
Sbjct: 512 NVVIWGSLMSACRIHG 527
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 241 bits (616), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 154/490 (31%), Positives = 245/490 (50%), Gaps = 64/490 (13%)
Query: 77 ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136
ARKVFDEI E + SWT++++GY K D G L + M +K +V++ ++ G + G
Sbjct: 207 ARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK-LVAYNAMISGYVNRG 265
Query: 137 LIAKLEVISWTTMCTGLE---------------------------------------RNA 157
+ + + +G+E N+
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNS 325
Query: 158 MTKL---------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
+ L AR F +MP KD+V+WNA+++ YV +G++ +A +F M ++N+ +W
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385
Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIR 265
MI A NG +KL + M + F P + + + SC HA ++
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK 445
Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
+GF+ +SL+ ++ G V AR F + D VSW A+I A HGHG
Sbjct: 446 IGFD--SSLSAGNALITMYAKCGV---VEEARQVFRTMPCLDSVSWNALIAALGQHGHGA 500
Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
+ ++ MLK G +PD IT + VL+ CSHAGLV++GRK F+ M Y P A+HY+ L
Sbjct: 501 EAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARL 560
Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
D+L R+G+ +A V+ + P + + ALL CR+HG++ + ++L L P
Sbjct: 561 IDLLCRSGKFSDAESVIESL-PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH 619
Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMR 499
G Y+L +N+HAA G+W+E A+VRK M +R VKK + S IE++ + HT L P
Sbjct: 620 DGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEA 679
Query: 500 EMGYVVLKEV 509
E Y+ L+++
Sbjct: 680 EAVYIYLQDL 689
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 198/453 (43%), Gaps = 50/453 (11%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
+ ++ A +LFDE+S+PD ++ +M++ + + D+ A +F P R+ V +AMI
Sbjct: 62 SSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMIT 121
Query: 67 GYVKAGRVDEARKVF----DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV 122
G+ A +F E ++ + +++ S+++G A D+ ++ LK+
Sbjct: 122 GFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL--ALVADDEKQCVQFHAAALKSG 179
Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
+ T V N L +S + C ++ AR+ F ++ KD +W M+T
Sbjct: 180 AGYITSV----SNAL------VSVYSKCA--SSPSLLHSARKVFDEILEKDERSWTTMMT 227
Query: 183 AYVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
YV G EL M + +NAMI Y G A++++ M S +E
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287
Query: 242 TCTSILTSC--EGMLE-NMLAHALAIR---LGFEQETSLT---YKC-------------- 278
T S++ +C G+L+ HA +R F + SL YKC
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP 347
Query: 279 TCHYVFWDWGFQLDVNS-----ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR 333
V W+ V+S A+L F+ ++ K+++SW MI + +G G + +LF+
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
M + G +P + F G + C+ G G++ ++ GF + L + + G
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-YHAQLLKIGFDSSLSAGNALITMYAKCG 466
Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
V+EA +V MP D V AL+ A HG
Sbjct: 467 VVEEARQVFRTMPC--LDSVSWNALIAALGQHG 497
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 17/221 (7%)
Query: 30 SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
S+++++ + +A A+F MP +++V+ +A++ GYV +G + EA+ +F E+ E N+
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMP--AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM 149
SW +ISG + +EG +LF M + + A +G I V+
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDY-------AFSGAIKSCAVLG--AY 433
Query: 150 CTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN 209
C G + +A +L + F + + A NA+IT Y G + +A ++F MP + +WN
Sbjct: 434 CNGQQYHA--QLLKIGF----DSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWN 487
Query: 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
A+I ++G A+ + M + P+ T ++LT+C
Sbjct: 488 ALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTAC 528
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 244/452 (53%), Gaps = 22/452 (4%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ ++ +I Y+K G + +R++FD + + + S+ S+I GY K + R LFD MP
Sbjct: 155 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 214
Query: 117 LKLKNVVSWTTVVLGCAHNG----LIAKL-------EVISWTTMCTGLERNAMTKLAREY 165
+++KN++SW +++ G A + +KL ++ISW +M G ++ + A+
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
F MP +D+V W MI Y G + A LF+ MP R+V +N+M+ Y +N A+
Sbjct: 275 FDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEAL 334
Query: 226 KLLNLM-FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGF-EQETSLTYKCTCHYV 283
++ + M +S +P++TT +L + + L+ A+ + L E++ L K +
Sbjct: 335 EIFSDMEKESHLLPDDTTLVIVLPAIAQL--GRLSKAIDMHLYIVEKQFYLGGKLGVALI 392
Query: 284 --FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
+ G + A L FE +E K + W AMI + HG G F + ++ + KP
Sbjct: 393 DMYSKCG---SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKP 449
Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
D+ITFVGVL+ CSH+GLV++G F LM R + +PR +HY C+ DIL R+G ++ A +
Sbjct: 450 DDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNL 509
Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461
+ +MP D V+ L AC H + + + + LI + +YVL +N++A+ G
Sbjct: 510 IEEMPVEPND-VIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGM 568
Query: 462 WDEFAQVRKKM-ERRVKKVASFSQIEVKGKDH 492
W + +VR M ER+++K+ S IE+ G+ H
Sbjct: 569 WKDVRRVRTMMKERKIEKIPGCSWIELDGRVH 600
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 172/363 (47%), Gaps = 39/363 (10%)
Query: 8 GKVKEATKLFD--EMSQPDPVSCASMITVFLRNHD-LPKAEALFRAMPESQRNIVAESAM 64
G + A +LFD M + +S SMI+ + + D + A LF MPE +++++ ++M
Sbjct: 201 GLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPE--KDLISWNSM 258
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
IDGYVK GR+++A+ +FD + +V +W ++I GY K V + LFD+MP ++VV+
Sbjct: 259 IDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMP--HRDVVA 316
Query: 125 WTTVVLGCAHNGL-IAKLEVIS-----------WTTMCTGLERNAMTKLAR-----EYFV 167
+ +++ G N + LE+ S TT+ L A+ +L R + +
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLP--AIAQLGRLSKAIDMHL 374
Query: 168 QMPNKDIVAWN----AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
+ K A+I Y G++ A +F + +++ WNAMI A +G +
Sbjct: 375 YIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 434
Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLT-YKCTC 280
A +L + + P++ T +L +C G+++ L +R + E L Y C
Sbjct: 435 AFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 494
Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFAR--MLKSG 338
+ +L N + +E DV+ W + A S+H F+ L A+ +L++G
Sbjct: 495 DILSRSGSIELAKN--LIEEMPVEPNDVI-WRTFLTACSHHKE-FETGELVAKHLILQAG 550
Query: 339 TKP 341
P
Sbjct: 551 YNP 553
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 238 bits (607), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 222/435 (51%), Gaps = 45/435 (10%)
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
+ + + SLISGY + D RLFD + K+VV+WT ++ G NG ++ V
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFD--GAEDKDVVTWTAMIDGFVRNGSASEAMVYF 192
Query: 146 WTTMCTGLERNAMT--------------KLARE----YFVQMPNK-DIVAWNAMITAYVD 186
TG+ N MT + R Y K D+ ++++ Y
Sbjct: 193 VEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGK 252
Query: 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
A ++F+ MP RNV TW A+I Y ++ M + M +S PNE T +S+
Sbjct: 253 CSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSV 312
Query: 247 LTSCE---GMLENMLAHALAIRLGFEQETS-------LTYKCTCHYVFWDWGFQLDVNSA 296
L++C + H I+ E T+ L KC C + A
Sbjct: 313 LSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGC------------LEEA 360
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
L FERL K+V +WTAMI ++ HG+ F LF ML S P+E+TF+ VLS C+H
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
GLVE+GR+ F M + +P+A+HY+C+ D+ R G ++EA ++ +M P E +VV G
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERM-PMEPTNVVWG 479
Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
AL G+C LH D + Y R+I+LQPS SG Y L AN+++ WDE A+VRK+M +++
Sbjct: 480 ALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539
Query: 476 VKKVASFSQIEVKGK 490
V K FS IEVKGK
Sbjct: 540 VVKSPGFSWIEVKGK 554
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 137/313 (43%), Gaps = 61/313 (19%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------- 54
S + +G A++LFD D V+ +MI F+RN +A F M ++
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205
Query: 55 -------------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDE 83
+ ++ S+++D Y K D+A+KVFDE
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDE 265
Query: 84 IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAK 140
+ NV +WT+LI+GY ++R D+G +F+ M LK N + ++V+ CAH G + +
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHR 324
Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
+ + +E N A +I YV G + +A +F +
Sbjct: 325 GRRVHCYMIKNSIEINT-----------------TAGTTLIDLYVKCGCLEEAILVFERL 367
Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
++NV+TW AMI+ +A +G A L M S PNE T ++L++C G++E
Sbjct: 368 HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR 427
Query: 259 AHALAIRLGFEQE 271
L+++ F E
Sbjct: 428 RLFLSMKGRFNME 440
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 244/466 (52%), Gaps = 38/466 (8%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
N+ ++A++ Y G +D AR VFD + +V+SW +ISGY + ++ +E L M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 117 LKLKNVVSWTTVVL-----GCAH---NGLIAKL-EVISWTTMCTGLE-RNAMTK------ 160
+N+VS T+V L C+ L ++ E +S L NA+
Sbjct: 229 ---RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACG 285
Query: 161 ---LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR 217
+A F M +D+++W +++ YV+ GN+ A F+ MP R+ +W MID Y R
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345
Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG-----FEQET 272
G ++++ M + +P+E T S+LT+C AH ++ +G + +
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTAC--------AHLGSLEIGEWIKTYIDKN 397
Query: 273 SLTYKCTCHYVFWDWGFQLDVN-SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
+ D F+ + A+ F ++ +D +WTAM++ +N+G G + ++F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
+M +PD+IT++GVLS C+H+G+V++ RK F M + +P HY C+ D+L R
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451
AG VKEA ++ KMP + + +V GALLGA RLH D MA+ ++++EL+P + Y L
Sbjct: 518 AGLVKEAYEILRKMPMNP-NSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576
Query: 452 SANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
N++A W + +VR+K+ + +KK FS IEV G H +A
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 29/295 (9%)
Query: 11 KEATKLFDEMSQP--DPVSCASMITVF----LRNHDLPKAEALFRAMPESQRNIVAESAM 64
+E+ +L EM + P S ++ + +++ DL K + + +++ ++ E+A+
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
++ Y G +D A ++F + +V SWTS++ GY + + R FD+MP +++ +S
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMP--VRDRIS 335
Query: 125 WTTVV-----LGCAHN-----------GLIA-KLEVISWTTMCTGLERNAMTKLAREYFV 167
WT ++ GC + G+I + ++S T C L + + + Y
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395
Query: 168 QMPNK-DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226
+ K D+V NA+I Y G +A ++F+ M QR+ +TW AM+ A NG A+K
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 227 LLNLMFQSRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLT-YKC 278
+ M P++ T +L++C GM++ +R E SL Y C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 47/323 (14%)
Query: 71 AGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL 130
G V A K+F +I E +V W ++I G+ K EG RL+ M LK V+ +
Sbjct: 81 GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM---LKEGVTPDSHTF 137
Query: 131 GCAHNGLIAKLEVISWTTMCTGLERNAMTK--LAREYFVQMPNKDIVAWNAMITAYVDAG 188
NGL ++ C + K L +VQ NA++ Y G
Sbjct: 138 PFLLNGLKRDGGALA----CGKKLHCHVVKFGLGSNLYVQ---------NALVKMYSLCG 184
Query: 189 NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248
M A +F+ + +V++WN MI Y R +++LL M ++ P T +L+
Sbjct: 185 LMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLS 244
Query: 249 SCEGM-----------------------LENMLAHALA----IRLGFEQETSLTYKCTCH 281
+C + LEN L +A A + + S+ +
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304
Query: 282 YVFWDWGF--QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
+ G+ + ++ AR F+++ +D +SWT MI Y G + +F M +G
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364
Query: 340 KPDEITFVGVLSDCSHAGLVEKG 362
PDE T V VL+ C+H G +E G
Sbjct: 365 IPDEFTMVSVLTACAHLGSLEIG 387
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 70/272 (25%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
G +K A FD+M D +S MI +LR ++ +FR M +
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 55 ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
+ ++V +A+ID Y K G ++A+KVF ++ + + +
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435
Query: 91 SWTSLISGYFKARQVDEGRRLFDRM-PLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTT 148
+WT+++ G Q E ++F +M + ++ + +++ V+ C H+G++ +
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ-------- 487
Query: 149 MCTGLERNAMTKLAREYFVQMPNK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
AR++F +M + +V + M+ AG + +A E+ MP
Sbjct: 488 -------------ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN 534
Query: 204 -NVWTWNAMI--DRYARNGP--EGAAMKLLNL 230
N W A++ R + P E AA K+L L
Sbjct: 535 PNSIVWGALLGASRLHNDEPMAELAAKKILEL 566
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 111/285 (38%), Gaps = 52/285 (18%)
Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
SIL C+ + H+ +I G + K +VFW V+ A F ++
Sbjct: 39 SILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKL---FVFWCSRLGGHVSYAYKLFVKIP 95
Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGR 363
DVV W MI +S + RL+ MLK G PD TF +L+ G + G+
Sbjct: 96 EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGK 155
Query: 364 K------TFNLMSRAYGFKPRAEHYS---------------CLADIL---------RRAG 393
K F L S Y + YS C D+ R
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215
Query: 394 QVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGD----VRMADYIGERLIELQPS 444
+ +E++ ++ +M ER+ V L +L AC D R+ +Y+ E E
Sbjct: 216 EYEESIELLVEM---ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVKG 489
A V N +AA GE D ++ + M+ R V S++ I VKG
Sbjct: 273 LENALV---NAYAACGEMDIAVRIFRSMKAR--DVISWTSI-VKG 311
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 161/533 (30%), Positives = 270/533 (50%), Gaps = 69/533 (12%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI---------- 58
+V A K+FDEM++ D +S S+I ++ N K ++F M S I
Sbjct: 245 RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFA 304
Query: 59 -VAESAMI--------------------------DGYVKAGRVDEARKVFDEIYEGNVYS 91
A+S +I D Y K G +D A+ VF E+ + +V S
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364
Query: 92 WTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLE-VISWTT 148
+TS+I+GY + E +LF+ M + +V + T V+ CA L+ + + V W
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW-- 422
Query: 149 MCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
++ N + DI NA++ Y G+M +A +F+ M +++ +W
Sbjct: 423 ----IKENDL------------GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 466
Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEGML---ENMLAHALAI 264
N +I Y++N A+ L NL+ + RF P+E T +L +C + + H +
Sbjct: 467 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526
Query: 265 RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
R G+ + + Y G L A + F+ + +KD+VSWT MI Y HG G
Sbjct: 527 RNGYFSDRHVANSLVDMYA--KCGALL---LAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
+ LF +M ++G + DEI+FV +L CSH+GLV++G + FN+M +P EHY+C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641
Query: 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444
+ D+L R G + +A R + MP D + GALL CR+H DV++A+ + E++ EL+P
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPP-DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700
Query: 445 SSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
++G YVL AN++A +W++ ++RK++ +R ++K S IE+KG+ + +A
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 190/467 (40%), Gaps = 78/467 (16%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES------------- 54
G +KEA+++FDE+ + ++ ++ D + LF+ M S
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202
Query: 55 -------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
+RN V S ++ Y+K RVD ARKVFDE+ E +V
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNS-LVAFYLKNQRVDSARKVFDEMTERDV 261
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRM-----PLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
SW S+I+GY ++G +F +M + L +VS V GCA + LI+
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS---VFAGCADSRLIS----- 313
Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
L R + + F +++ N ++ Y G++ A +F M R+
Sbjct: 314 --------LGRAVHSIGVKACF----SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361
Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHA 261
V ++ +MI YAR G G A+KL M + P+ T T++L C + E H
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421
Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSN 320
+ +E L + D + + A L F + KD++SW +I YS
Sbjct: 422 ------WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475
Query: 321 HGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
+ + + LF +L+ PDE T VL C+ +KGR+ + R F R
Sbjct: 476 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH 535
Query: 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
S L D+ + G + A + + +D V ++ +HG
Sbjct: 536 VANS-LVDMYAKCGALLLAHMLFDDIAS--KDLVSWTVMIAGYGMHG 579
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 151/345 (43%), Gaps = 32/345 (9%)
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
Y G + EA +VFDE+ W L++ K+ LF +M + S+T
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 128 VVLGCAHNGL--IAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
+ + + L + E + + +G ERN++ N+++ Y
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG------------------NSLVAFY 240
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
+ + A ++F+ M +R+V +WN++I+ Y NG + + M S + T
Sbjct: 241 LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300
Query: 245 SILTSC-EGMLENM--LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFE 301
S+ C + L ++ H++ ++ F +E C+ + + D++SA+ F
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRF-----CNTLLDMYSKCGDLDSAKAVFR 355
Query: 302 RLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
+ + VVS+T+MI Y+ G + +LF M + G PD T VL+ C+ L+++
Sbjct: 356 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415
Query: 362 GRKTFN-LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
G++ + GF + L D+ + G ++EA V S+M
Sbjct: 416 GKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEM 458
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 8 GKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR--NIVAE 61
G EA KLF+EM + PD + +++ R L + + + + E+ +I
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
+A++D Y K G + EA VF E+ ++ SW ++I GY K +E LF+ + + +
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495
Query: 121 --NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
+ + V+ CA K I M G YF D N
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNG------------YF-----SDRHVAN 538
Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
+++ Y G + A LF+ + +++ +W MI Y +G A+ L N M Q+
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 239 NETTCTSILTSC 250
+E + S+L +C
Sbjct: 599 DEISFVSLLYAC 610
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 243/492 (49%), Gaps = 58/492 (11%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ +++I Y G +D A KVF I E +V SW S+I+G+ + D+ LF +M
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN----------AMTKL--- 161
+ + V+ V+ CA I LE +C+ +E N AM +
Sbjct: 225 SEDVKASHVTMVGVLSACAK---IRNLEF--GRQVCSYIEENRVNVNLTLANAMLDMYTK 279
Query: 162 ------AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
A+ F M KD V W M+ Y + + A E+ N MPQ+++ WNA+I Y
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAY 339
Query: 216 ARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLG 267
+NG P A + L Q N+ T S L++C G LE + IR+
Sbjct: 340 EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMN 399
Query: 268 FEQETSLTY---KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG 324
F ++L + KC D+ +R F +E +DV W+AMI + HG G
Sbjct: 400 FHVTSALIHMYSKCG------------DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
+ +F +M ++ KP+ +TF V CSH GLV++ F+ M YG P +HY+C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 385 LADILRRAGQVKEAMRVVSKMP-PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
+ D+L R+G +++A++ + MP P V GALLGAC++H ++ +A+ RL+EL+P
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTS--VWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA-----P 497
+ GA+VL +N++A G+W+ +++RK M +KK S IE+ G H L+ P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 498 MREMGYVVLKEV 509
M E Y L EV
Sbjct: 626 MSEKVYGKLHEV 637
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 134/306 (43%), Gaps = 65/306 (21%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMP----------- 52
F C G + A K+F + + D VS SMI F++ KA LF+ M
Sbjct: 177 FSC-GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTM 235
Query: 53 -----------------------ESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYE 86
E R N+ +AM+D Y K G +++A+++FD + E
Sbjct: 236 VGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE 295
Query: 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----LIA-- 139
+ +WT+++ GY + + R + + MP K++V+W ++ NG LI
Sbjct: 296 KDNVTWTTMLDGYAISEDYEAAREVLNSMP--QKDIVAWNALISAYEQNGKPNEALIVFH 353
Query: 140 --------KLEVISWTTMCTGLERNAMTKLAR-------EYFVQMPNKDIVAWNAMITAY 184
KL I+ + + + +L R ++ ++M + +A+I Y
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM---NFHVTSALIHMY 410
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
G++ ++ E+FN + +R+V+ W+AMI A +G A+ + M ++ PN T T
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFT 470
Query: 245 SILTSC 250
++ +C
Sbjct: 471 NVFCAC 476
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 115/283 (40%), Gaps = 41/283 (14%)
Query: 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
L A + AR+ F ++P + AWN +I AY + P ++W +
Sbjct: 73 ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPD-----------PVLSIWAF--- 118
Query: 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGF 268
L+++ +S+ PN+ T ++ + + L H +A++
Sbjct: 119 ----------------LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
+ + + ++ G D++SA F ++ KDVVSW +MI + G +
Sbjct: 163 GSDVFVANSLI--HCYFSCG---DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
LF +M K +T VGVLS C+ +E GR+ + + + + D+
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR-VNVNLTLANAMLDM 276
Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
+ G +++A R+ M E+D+V +L + D A
Sbjct: 277 YTKCGSIEDAKRLFDAM--EEKDNVTWTTMLDGYAISEDYEAA 317
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 242/464 (52%), Gaps = 46/464 (9%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
+A++ Y K + +A ++F EI GNV SWT++ISG+ + +E LF M K
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393
Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWT-----TMCTGLERNAMTKLAREYFVQMPNKDIV 175
+T V+ + L VIS + + T ER++
Sbjct: 394 RPNEFTYSVI-------LTALPVISPSEVHAQVVKTNYERSS-----------------T 429
Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
A++ AYV G + +A+++F+ + +++ W+AM+ YA+ G AA+K+ + +
Sbjct: 430 VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGG 489
Query: 236 FMPNETTCTSILTSCEG----MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
PNE T +SIL C M + H AI+ + +SL C + + +
Sbjct: 490 IKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD--SSL---CVSSALLTMYAKKG 544
Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
++ SA F+R KD+VSW +MI Y+ HG + +F M K K D +TF+GV +
Sbjct: 545 NIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFA 604
Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
C+HAGLVE+G K F++M R P EH SC+ D+ RAGQ+++AM+V+ M P+
Sbjct: 605 ACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAG 663
Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
+ +L ACR+H + E++I ++P S AYVL +N++A G+W E A+VRK
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
M ER VKK +S IEVK K ++ LA P+++ Y+ L+++
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 173/394 (43%), Gaps = 61/394 (15%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ ++++D Y+K + RKVFDE+ E NV +WT+LISGY + DE LF RM
Sbjct: 127 DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQ 186
Query: 117 LKLKNVVSWT-TVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
+ S+T LG A G+ + + + GL+ K I
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD-----------------KTI 229
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
N++I Y+ GN+ +A LF+ ++V TWN+MI YA NG + A+ + M +
Sbjct: 230 PVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLN 289
Query: 235 RFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTY-------KCTCHYVF 284
+E++ S++ C + E H ++ GF + ++ KCT
Sbjct: 290 YVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAM--- 346
Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
+++ RL E +VVSWTAMI + + + LF+ M + G +P+E
Sbjct: 347 --------LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398
Query: 345 TFVGVLSDCS-------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
T+ +L+ HA +V KT S G + L D + G+V+E
Sbjct: 399 TYSVILTALPVISPSEVHAQVV----KTNYERSSTVG--------TALLDAYVKLGKVEE 446
Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
A +V S + ++D V A+L G+ A
Sbjct: 447 AAKVFSGI--DDKDIVAWSAMLAGYAQTGETEAA 478
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 194/447 (43%), Gaps = 47/447 (10%)
Query: 11 KEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMIDGY 68
K+ K+FDEM + + V+ ++I+ + RN + LF M +Q N +A +
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVL 204
Query: 69 VKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
+ G +V + + + SLI+ Y K V + R LFD+ ++K+VV+
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT--EVKSVVT 262
Query: 125 WTTVVLGCAHNGL-----------------IAKLEVISWTTMCTGLERNAMTKLAREYFV 167
W +++ G A NGL +++ S +C L+ T+ V
Sbjct: 263 WNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVV 322
Query: 168 Q---MPNKDIVAWNAMITAYVDAGNMAQASELFN-LMPQRNVWTWNAMIDRYARNGPEGA 223
+ + +++I A++ AY M A LF + NV +W AMI + +N +
Sbjct: 323 KYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380
Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283
A+ L + M + PNE T + ILT+ ++ HA ++ +E+ +++ YV
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTALP-VISPSEVHAQVVKTNYERSSTVGTALLDAYV 439
Query: 284 FWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343
V A F ++ KD+V+W+AM+ Y+ G ++F + K G KP+E
Sbjct: 440 KLG-----KVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494
Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL----RRAGQVKEAM 399
TF +L+ C+ K F+ + K R + C++ L + G ++ A
Sbjct: 495 FTFSSILNVCAATNASMGQGKQFH----GFAIKSRLDSSLCVSSALLTMYAKKGNIESAE 550
Query: 400 RVVSKMPPHERDHVVLGALLGACRLHG 426
V + E+D V +++ HG
Sbjct: 551 EVFKRQ--REKDLVSWNSMISGYAQHG 575
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 31/296 (10%)
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNVV 123
G V + R+ A +FD+ + S+ SL+ G+ + + E +RLF R+ +++
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMD--- 92
Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGL-ERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
C+ + K+ T+C L R + + F+ D+ +++
Sbjct: 93 --------CSIFSSVLKVS----ATLCDELFGRQLHCQCIKFGFLD----DVSVGTSLVD 136
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
Y+ N ++F+ M +RNV TW +I YARN + L M PN T
Sbjct: 137 TYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196
Query: 243 CTSIL--TSCEGM-LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
+ L + EG+ + H + ++ G ++ ++ Y+ +V AR+
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG-----NVRKARIL 251
Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
F++ E K VV+W +MI Y+ +G + +F M + + E +F V+ C++
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 230/438 (52%), Gaps = 40/438 (9%)
Query: 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
+++V ++ +D Y K + ARKVF E+ E N SWT+L+ Y K+ +++E + +FD M
Sbjct: 143 KDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLM 202
Query: 116 PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
P + N+ SW +V +GL+ ++++ A++ F +MP +DI+
Sbjct: 203 PER--NLGSWNALV-----DGLVKSGDLVN----------------AKKLFDEMPKRDII 239
Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
++ +MI Y G+M A +LF +V W+A+I YA+NG A K+ + M
Sbjct: 240 SYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKN 299
Query: 236 FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
P+E ++++C M L + L Q + K + HYV +D+N+
Sbjct: 300 VKPDEFIMVGLMSACSQMGCFELCEKVDSYL--HQRMN---KFSSHYVVPAL---IDMNA 351
Query: 296 -------ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
A FE + +D+VS+ +M+ + HG G + RLF +M+ G PDE+ F
Sbjct: 352 KCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTV 411
Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
+L C + LVE+G + F LM + Y +HYSC+ ++L R G++KEA ++ M P
Sbjct: 412 ILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSM-PF 470
Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
E G+LLG C LHG+ +A+ + L EL+P S+G+YVL +N++AA W + A +
Sbjct: 471 EAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHL 530
Query: 469 RKKM-ERRVKKVASFSQI 485
R KM E + K+ S I
Sbjct: 531 RDKMNENGITKICGRSWI 548
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 170/381 (44%), Gaps = 66/381 (17%)
Query: 80 VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------------PLKLKNVVSWT 126
VF+ + Y W LI GY E + RM PL +K +
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 127 TVVLGCAHNGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
V +G + +GL+ ++ +V+ T+ + AR+ F +MP ++ V+W A++
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
AYV +G + +A +F+LMP+RN+ +WNA++D ++G A KL + M + + +
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDII----S 240
Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
TS++ G+ + D+ SAR FE
Sbjct: 241 YTSMID------------------GYAKGG-------------------DMVSARDLFEE 263
Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG 362
DV +W+A+IL Y+ +G + F++F+ M KPDE VG++S CS G E
Sbjct: 264 ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELC 323
Query: 363 RKTFN-LMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
K + L R F + HY L D+ + G + A ++ +MP +RD V +++
Sbjct: 324 EKVDSYLHQRMNKF---SSHYVVPALIDMNAKCGHMDRAAKLFEEMP--QRDLVSYCSMM 378
Query: 420 GACRLHGDVRMADYIGERLIE 440
+HG A + E++++
Sbjct: 379 EGMAIHGCGSEAIRLFEKMVD 399
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 144/267 (53%), Gaps = 30/267 (11%)
Query: 8 GKVKE---ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64
GK K+ A K+F EM + + VS +++ ++++ +L +A+++F MPE RN+ + +A+
Sbjct: 156 GKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPE--RNLGSWNAL 213
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
+DG VK+G + A+K+FDE+ + ++ S+TS+I GY K + R LF+ + +V +
Sbjct: 214 VDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEA--RGVDVRA 271
Query: 125 WTTVVLGCAHNG-----------LIAK------LEVISWTTMCTGLERNAMTKLAREYFV 167
W+ ++LG A NG + AK ++ + C+ + + + Y
Sbjct: 272 WSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLH 331
Query: 168 QMPNKDIVAWNAMITAYVD----AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
Q NK + + ++ A +D G+M +A++LF MPQR++ ++ +M++ A +G
Sbjct: 332 QRMNK--FSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSE 389
Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC 250
A++L M +P+E T IL C
Sbjct: 390 AIRLFEKMVDEGIVPDEVAFTVILKVC 416
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 12/242 (4%)
Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
M Q P+ + ++ C+ + HA IR G EQ+ +L
Sbjct: 1 MIQRLSHPSLLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSS----SS 56
Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGV 349
++ + FER+ + W +I YSN F+ + RM+++G +PDE TF V
Sbjct: 57 SSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLV 116
Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
+ CS+ G V G L+ R GF + D + + A +V +MP E
Sbjct: 117 MKVCSNNGQVRVGSSVHGLVLRI-GFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMP--E 173
Query: 410 RDHVVLGALLGACRLHGDVR----MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465
R+ V AL+ A G++ M D + ER + + V S ++ A+ +DE
Sbjct: 174 RNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEM 233
Query: 466 AQ 467
+
Sbjct: 234 PK 235
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 262/517 (50%), Gaps = 53/517 (10%)
Query: 30 SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
S++ ++ + D A+ +F M R+I + +AMI +++ G++D A F+++ E ++
Sbjct: 186 SLLNMYAKCGDPMMAKFVFDRMV--VRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243
Query: 90 YSWTSLISGY----FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH----------- 134
+W S+ISG+ + R +D ++ R L + + +V+ CA+
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKML-RDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 135 ----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKD--IVAWNAMIT 182
+G++ +IS + C G+E AR Q KD I + A++
Sbjct: 303 SHIVTTGFDISGIVLN-ALISMYSRCGGVET------ARRLIEQRGTKDLKIEGFTALLD 355
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
Y+ G+M QA +F + R+V W AMI Y ++G G A+ L M PN T
Sbjct: 356 GYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT 415
Query: 243 CTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299
++L+ + H A++ G S++ Y ++ SA A
Sbjct: 416 LAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG-----NITSASRA 470
Query: 300 FERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
F+ + +D VSWT+MI+A + HGH + LF ML G +PD IT+VGV S C+HAGL
Sbjct: 471 FDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530
Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
V +GR+ F++M P HY+C+ D+ RAG ++EA + KMP E D V G+L
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI-EPDVVTWGSL 589
Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVK 477
L ACR+H ++ + ERL+ L+P +SGAY AN+++A G+W+E A++RK M + RVK
Sbjct: 590 LSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVK 649
Query: 478 KVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEV 509
K FS IEVK K H P + Y+ +K++
Sbjct: 650 KEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKI 686
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 130/538 (24%), Positives = 217/538 (40%), Gaps = 108/538 (20%)
Query: 20 MSQPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR--------NIVAESAMIDGYV 69
M P P+S ++++ + L + K+ F A R ++ + +++ Y
Sbjct: 1 MDAPVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYS 60
Query: 70 KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
K G ARK+FDE+ +SW +++S Y K +D FD++P ++ VSWTT++
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP--QRDSVSWTTMI 118
Query: 130 LGCAHNGLIAK------------LEVISWT----------TMCT-------------GLE 154
+G + G K +E +T T C GL
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 155 RNAMTK--------------LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
N +A+ F +M +DI +WNAMI ++ G M A F M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSC---EGMLEN 256
+R++ TWN+MI + + G + A+ + + M + + P+ T S+L++C E +
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298
Query: 257 MLAHALAIRLGF---------------------------EQETSLTYKCTCHYVFWDWGF 289
H+ + GF EQ + K D
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358
Query: 290 QL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
+L D+N A+ F L+ +DVV+WTAMI+ Y HG + LF M+ G +P+ T
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418
Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-----CLADILRRAGQVKEAMRVVS 403
+LS S + G++ ++ E YS L + +AG + A R
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKS------GEIYSVSVSNALITMYAKAGNITSASRAFD 472
Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQPSS-SGAYVLSANVHAA 458
+ ERD V +++ A HG A + E ++ L+P + V SA HA
Sbjct: 473 -LIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 31/330 (9%)
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
AR+ F +MP + +WN +++AY G+M E F+ +PQR+ +W MI Y G
Sbjct: 68 ARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQY 127
Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLT--- 275
A++++ M + P + T T++L S M H+ ++LG S++
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187
Query: 276 ----YKC----TCHYVF----------WD--WGFQLDVNSARLA---FERLEAKDVVSWT 312
KC +VF W+ + V LA FE++ +D+V+W
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 313 AMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
+MI ++ G+ + +F++ML+ S PD T VLS C++ + G++ + +
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307
Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
GF + L + R G V+ A R++ + + ALL GD+ A
Sbjct: 308 T-GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366
Query: 432 DYIGERLIELQPSSSGAYVLSANVHAARGE 461
I L + + A ++ H + GE
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGE 396
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 158/522 (30%), Positives = 254/522 (48%), Gaps = 80/522 (15%)
Query: 13 ATKLFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAM-------PE----------- 53
A KLFD+ Q D SMI +L P + AL+R + P+
Sbjct: 29 ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSC 88
Query: 54 -------------SQ-------RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWT 93
SQ ++ + ++D Y K G++ AR FDE+ + SWT
Sbjct: 89 SLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWT 148
Query: 94 SLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153
+LISGY + ++D +LFD+MP +K+VV + ++ G +G +
Sbjct: 149 ALISGYIRCGELDLASKLFDQMP-HVKDVVIYNAMMDGFVKSGDMTS------------- 194
Query: 154 ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMID 213
AR F +M +K ++ W MI Y + ++ A +LF+ MP+RN+ +WN MI
Sbjct: 195 --------ARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIG 246
Query: 214 RYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLG----- 267
Y +N ++L M + + P++ T S+L + ++ A+ LG
Sbjct: 247 GYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA--------ISDTGALSLGEWCHC 298
Query: 268 FEQETSLTYKC-TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
F Q L K C + + ++ A+ F+ + K V SW AMI Y+ +G+
Sbjct: 299 FVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358
Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
LF M+ KPDEIT + V++ C+H GLVE+GRK F++M R G + EHY C+
Sbjct: 359 ALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMV 416
Query: 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446
D+L RAG +KEA +++ MP E + ++L + L AC + D+ A+ I ++ +EL+P +
Sbjct: 417 DLLGRAGSLKEAEDLITNMP-FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475
Query: 447 GAYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEV 487
G YVL N++AA WD+F V+ M + + KK S IE+
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEI 517
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 144/270 (53%), Gaps = 27/270 (10%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
GK+ A FDEM VS ++I+ ++R +L A LF MP +++V +AM+DG
Sbjct: 127 GKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHV-KDVVIYNAMMDG 185
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
+VK+G + AR++FDE+ V +WT++I GY + +D R+LFD MP +N+VSW T
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMP--ERNLVSWNT 243
Query: 128 VVLG-CAHNGLIAKLEVISWTTMCTGLERNAMTKLAR----------------EYFVQMP 170
++ G C + + + T L+ + +T L+ FVQ
Sbjct: 244 MIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRK 303
Query: 171 --NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL- 227
+K + A++ Y G + +A +F+ MP++ V +WNAMI YA NG AA+ L
Sbjct: 304 KLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLF 363
Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLE 255
+ +M + + P+E T +++T+C G++E
Sbjct: 364 VTMMIEEK--PDEITMLAVITACNHGGLVE 391
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 75/291 (25%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
+G + A +LFDEM+ ++ +MI + D+ A LF AMPE RN+V+ + MI
Sbjct: 189 SGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE--RNLVSWNTMIG 246
Query: 67 GYVKAGRVDEARKVFDEI----------------------------------------YE 86
GY + + E ++F E+ +
Sbjct: 247 GYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLD 306
Query: 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISW 146
V T+++ Y K ++++ +R+FD MP K +V SW
Sbjct: 307 KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEK-----------------------QVASW 343
Query: 147 TTMCTGLERNAMTKLAREYFVQM---PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
M G N + A + FV M D + A+ITA G + + + F++M +
Sbjct: 344 NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREM 403
Query: 204 ----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
+ + M+D R G A L+ M F PN +S L++C
Sbjct: 404 GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM---PFEPNGIILSSFLSAC 451
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 231 bits (590), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 259/524 (49%), Gaps = 69/524 (13%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE------ 61
G++K A K+F++++ + V SMI +++N + LF M E+ N++
Sbjct: 190 GEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN--NVLGNEYTYGT 247
Query: 62 ---------------------------------SAMIDGYVKAGRVDEARKVFDEIYEGN 88
++++D YVK G + AR+VF+E +
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVD 307
Query: 89 VYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NVVSWTTVVLGCAHNGLIAKLEVISW 146
+ WT++I GY V+E LF +M +++K N V+ +V+ GC GLI LE+
Sbjct: 308 LVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC---GLIENLEL--- 361
Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
G + ++ +++ D NA++ Y A +F + ++++
Sbjct: 362 -----GRSVHGLS-------IKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIV 409
Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALA 263
WN++I +++NG A+ L + M PN T S+ ++C + + HA +
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYS 469
Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323
++LGF +S+ + G D SARL F+ +E K+ ++W+AMI Y G
Sbjct: 470 VKLGFLASSSVHVGTALLDFYAKCG---DPQSARLIFDTIEEKNTITWSAMIGGYGKQGD 526
Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
LF MLK KP+E TF +LS C H G+V +G+K F+ M + Y F P +HY+
Sbjct: 527 TIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYT 586
Query: 384 CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443
C+ D+L RAG++++A+ ++ KMP + D GA L C +H + + + +++++L P
Sbjct: 587 CMVDMLARAGELEQALDIIEKMPI-QPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHP 645
Query: 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE 486
+ YVL +N++A+ G W++ +VR M++R + K+A S +E
Sbjct: 646 DDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 208/510 (40%), Gaps = 86/510 (16%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF------------- 48
S +G G K+A +FD++ +PD M+ + N + + L+
Sbjct: 84 SLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDI 143
Query: 49 ------RAMPESQR-----------------NIVAESAMIDGYVKAGRVDEARKVFDEIY 85
+A E Q + V + ++D Y K G + A KVF++I
Sbjct: 144 VFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT 203
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEV 143
NV WTS+I+GY K +EG LF+RM L N ++ T+++ C ++ L
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK---LSALHQ 260
Query: 144 ISWTTMC---TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
W C +G+E ++ +++ YV G+++ A +FN
Sbjct: 261 GKWFHGCLVKSGIELSS-----------------CLVTSLLDMYVKCGDISNARRVFNEH 303
Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM--- 257
++ W AMI Y NG A+ L M PN T S+L+ C G++EN+
Sbjct: 304 SHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC-GLIENLELG 362
Query: 258 -LAHALAIRLGF---EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA 313
H L+I++G +L + Y D A+ FE KD+V+W +
Sbjct: 363 RSVHGLSIKVGIWDTNVANALVHMYAKCYQNRD---------AKYVFEMESEKDIVAWNS 413
Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
+I +S +G + LF RM P+ +T + S C+ G + G + + S
Sbjct: 414 IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVG-SSLHAYSVKL 472
Query: 374 GFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
GF + + + L D + G + A + + E++ + A++G GD +
Sbjct: 473 GFLASSSVHVGTALLDFYAKCGDPQSARLIFDTI--EEKNTITWSAMIGGYGKQGDTIGS 530
Query: 432 DYIGERLIELQP---SSSGAYVLSANVHAA 458
+ E +++ Q S+ +LSA H
Sbjct: 531 LELFEEMLKKQQKPNESTFTSILSACGHTG 560
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/399 (23%), Positives = 170/399 (42%), Gaps = 28/399 (7%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
+I + ++ Y G +AR VFD+I E + Y W ++ Y ++ E +L+D
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYD--- 131
Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
L +K+ + +V A CT L+ K V++P+ D V
Sbjct: 132 LLMKHGFRYDDIVFSKA-------------LKACTELQDLDNGKKIHCQLVKVPSFDNVV 178
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
++ Y G + A ++FN + RNV W +MI Y +N + L N M ++
Sbjct: 179 LTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNV 238
Query: 237 MPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
+ NE T +++ +C + + H ++ G E + L YV D+
Sbjct: 239 LGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCG-----DI 293
Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
++AR F D+V WTAMI+ Y+++G + LF +M KP+ +T VLS C
Sbjct: 294 SNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
+E GR L + + + L + + Q ++A + V +M E+D V
Sbjct: 354 GLIENLELGRSVHGLSIKVGIWDTNVA--NALVHMYAKCYQNRDA-KYVFEMES-EKDIV 409
Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
+++ +G + A ++ R+ + +G V S
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVAS 448
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 154/526 (29%), Positives = 268/526 (50%), Gaps = 50/526 (9%)
Query: 8 GKVKEATKLFDEMS-----QPDPVSCASMI--TVFLRNHDLPKAEALFRAMPESQRNIVA 60
GK K A ++F M+ +PD ++ +++ L H L K F E +N+
Sbjct: 207 GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFV 266
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-PLKL 119
+ ++D Y K G +DEA VF + +V SW ++++GY + + ++ RLF++M K+
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKI 326
Query: 120 K-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLA---------------- 162
K +VV+W+ + G A GL + + + +G++ N +T ++
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386
Query: 163 -REYFVQMP--------NKDIVAWNAMITAYVDAGNMAQASELFN-LMP-QRNVWTWNAM 211
Y ++ P + + N +I Y + A +F+ L P +R+V TW M
Sbjct: 387 IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVM 446
Query: 212 IDRYARNGPEGAAMKLLNLMFQ--SRFMPNETTCTSILTSCEGMLENMLA---HALAIRL 266
I Y+++G A++LL+ MF+ + PN T + L +C + + HA A+R
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR- 505
Query: 267 GFEQETSLTYKCTCHY-VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325
+Q + C ++ G ++ ARL F+ + AK+ V+WT+++ Y HG+G
Sbjct: 506 -NQQNAVPLFVSNCLIDMYAKCG---SISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGE 561
Query: 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385
+ +F M + G K D +T + VL CSH+G++++G + FN M +G P EHY+CL
Sbjct: 562 EALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACL 621
Query: 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445
D+L RAG++ A+R++ +M P E VV A L CR+HG V + +Y E++ EL +
Sbjct: 622 VDLLGRAGRLNAALRLIEEM-PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNH 680
Query: 446 SGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIE-VKG 489
G+Y L +N++A G W + ++R M + VKK S +E +KG
Sbjct: 681 DGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKG 726
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 170/417 (40%), Gaps = 66/417 (15%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
N+ +A++ Y + + +ARKVFDE+ +V SW S+I Y K + +F RM
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 117 LKL---KNVVSWTTVVLGCAHNG---LIAKLEVISWTT-----MCTG------LERNAMT 159
+ + ++ V+ CA G L +L + T+ M G + M
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280
Query: 160 KLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRY 215
A F M KD+V+WNAM+ Y G A LF M + +V TW+A I Y
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340
Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFE--- 269
A+ G A+ + M S PNE T S+L+ C ++ H AI+ +
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400
Query: 270 -----------QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--DVVSWTAMIL 316
Q + KC V++AR F+ L K DVV+WT MI
Sbjct: 401 NGHGDENMVINQLIDMYAKCK------------KVDTARAMFDSLSPKERDVVTWTVMIG 448
Query: 317 AYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG 374
YS HG + L + M + T+P+ T L C+ + G++ AY
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQI-----HAYA 503
Query: 375 FKPRAEHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
+ + +CL D+ + G + +A V M ++ V +L+ +HG
Sbjct: 504 LRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM--MAKNEVTWTSLMTGYGMHG 558
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 169/423 (39%), Gaps = 79/423 (18%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL 119
S +I Y+ G + A + + VY W SLI Y ++ LF M
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM---- 118
Query: 120 KNVVSWTT-------VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
+ +SWT V C + E ++ TG N
Sbjct: 119 -HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISN---------------- 161
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
+ NA++ Y +++ A ++F+ M +V +WN++I+ YA+ G A+++ + M
Sbjct: 162 -VFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 232 --FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQE-------TSLTYKC- 278
F R P+ T ++L C + + L H A+ Q + KC
Sbjct: 221 NEFGCR--PDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCG 278
Query: 279 ---TCHYVFWDWGFQLDV-----------------NSARLAFERLEAK----DVVSWTAM 314
+ VF + + DV ++ RL FE+++ + DVV+W+A
Sbjct: 279 MMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFEDAVRL-FEKMQEEKIKMDVVTWSAA 336
Query: 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT------FNL 368
I Y+ G G++ + +ML SG KP+E+T + VLS C+ G + G++ + +
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI 396
Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDV 428
R G + L D+ + +V A + + P ERD V ++G HGD
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 429 RMA 431
A
Sbjct: 457 NKA 459
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 249/481 (51%), Gaps = 32/481 (6%)
Query: 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82
P V ++ ++ + L A +F MP R++ + + M++GY + G ++EARK+FD
Sbjct: 118 PGIVIWNRLLRMYAKCGSLVDARKVFDEMP--NRDLCSWNVMVNGYAEVGLLEEARKLFD 175
Query: 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFD---RMPLKLKNVVSWTTVVLGCAHNGLIA 139
E+ E + YSWT++++GY K Q +E L+ R+P N+ + + V A I
Sbjct: 176 EMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIR 235
Query: 140 KLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
+ + I + GL + D V W++++ Y G + +A +F+
Sbjct: 236 RGKEIHGHIVRAGL-----------------DSDEVLWSSLMDMYGKCGCIDEARNIFDK 278
Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259
+ +++V +W +MIDRY ++ L + + S PNE T +L +C + L
Sbjct: 279 IVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELG 338
Query: 260 ---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
H R+GF+ + + Y ++ SA+ + D+VSWT++I
Sbjct: 339 KQVHGYMTRVGFDPYSFASSSLVDMYTKCG-----NIESAKHVVDGCPKPDLVSWTSLIG 393
Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
+ +G + + F +LKSGTKPD +TFV VLS C+HAGLVEKG + F ++ +
Sbjct: 394 GCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLS 453
Query: 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE 436
++HY+CL D+L R+G+ ++ V+S+M P + + ++LG C +G++ +A+ +
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512
Query: 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLL 495
L +++P + YV AN++AA G+W+E ++RK+M E V K S E+K K H +
Sbjct: 513 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFI 572
Query: 496 A 496
A
Sbjct: 573 A 573
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 184/439 (41%), Gaps = 96/439 (21%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---PESQRNI------ 58
G ++EA KLFDEM++ D S +M+T +++ +A L+ M P S+ NI
Sbjct: 165 GLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIA 224
Query: 59 -----------------------------VAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
V S+++D Y K G +DEAR +FD+I E +V
Sbjct: 225 VAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDV 284
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRM--PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147
SWTS+I YFK+ + EG LF + + N ++ V+ CA T
Sbjct: 285 VSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACA-----------DLT 333
Query: 148 TMCTGLERNA-MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW 206
T G + + MT++ + + A ++++ Y GN+ A + + P+ ++
Sbjct: 334 TEELGKQVHGYMTRVGFDPYS-------FASSSLVDMYTKCGNIESAKHVVDGCPKPDLV 386
Query: 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266
+W ++I A+NG A+K +L+ +S P+ T ++L++C HA +
Sbjct: 387 SWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSAC--------THAGLVEK 438
Query: 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQ 326
G E S+T K + + +D+ + FE+L K V+S M
Sbjct: 439 GLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQL--KSVISEMPM------------ 484
Query: 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386
KP + + VL CS G ++ + + + P Y +A
Sbjct: 485 -------------KPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVT--YVTMA 529
Query: 387 DILRRAGQVKEAMRVVSKM 405
+I AG+ +E ++ +M
Sbjct: 530 NIYAAAGKWEEEGKMRKRM 548
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 112/278 (40%), Gaps = 66/278 (23%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------------ 51
+G G + EA +FD++ + D VS SMI + ++ + +LF +
Sbjct: 263 YGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTF 322
Query: 52 ------------PESQRNI-------------VAESAMIDGYVKAGRVDEARKVFDEIYE 86
E + + A S+++D Y K G ++ A+ V D +
Sbjct: 323 AGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPK 382
Query: 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-----NVVSWTTVVLGCAHNGLIAK- 140
++ SWTSLI G + Q DE + FD L LK + V++ V+ C H GL+ K
Sbjct: 383 PDLVSWTSLIGGCAQNGQPDEALKYFD---LLLKSGTKPDHVTFVNVLSACTHAGLVEKG 439
Query: 141 LEVI--------------SWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNAMITAYV 185
LE +T + L R+ + + +MP K W +++
Sbjct: 440 LEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCS 499
Query: 186 DAGNM----AQASELFNLMPQRNVWTWNAMIDRYARNG 219
GN+ A ELF + P+ V T+ M + YA G
Sbjct: 500 TYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAAG 536
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383
G ++ R ++L KP T+ ++ CS +E+G+K + R GF P ++
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHI-RTSGFVPGIVIWN 124
Query: 384 CLADILRRAGQVKEAMRVVSKMP 406
L + + G + +A +V +MP
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMP 147
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 238/481 (49%), Gaps = 38/481 (7%)
Query: 58 IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
++ S ++ Y G + +A+KVF + + N + SL+ G +++ +LF M
Sbjct: 174 LLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME- 232
Query: 118 KLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTGLERNAMT 159
K+ VSW ++ G A NGL AK + + M C GL
Sbjct: 233 --KDSVSWAAMIKGLAQNGL-AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEG 289
Query: 160 KLAREYFVQMPNKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
K ++ +D I +A+I Y + A +F+ M Q+NV +W AM+ Y +
Sbjct: 290 KQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT 349
Query: 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT 275
G A+K+ M +S P+ T +++C + E H AI G +++
Sbjct: 350 GRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVS 409
Query: 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335
Y G D++ + F + +D VSWTAM+ AY+ G + +LF +M+
Sbjct: 410 NSLVTLY-----GKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMV 464
Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
+ G KPD +T GV+S CS AGLVEKG++ F LM+ YG P HYSC+ D+ R+G++
Sbjct: 465 QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRL 524
Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
+EAMR ++ M P D + LL ACR G++ + + E LIEL P Y L +++
Sbjct: 525 EEAMRFINGM-PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSI 583
Query: 456 HAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
+A++G+WD AQ+R+ M E+ VKK S I+ KGK H+ A P + Y L+E+
Sbjct: 584 YASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEEL 643
Query: 510 D 510
+
Sbjct: 644 N 644
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 184/436 (42%), Gaps = 82/436 (18%)
Query: 47 LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVD 106
+ RA+P + + + ++ Y AR+VFD I + N++SW +L+ Y KA +
Sbjct: 32 IIRALPYPETFLY--NNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLIS 89
Query: 107 EGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCT 151
E F+++P ++ V+W ++ G + +GL+ A L ++ TM
Sbjct: 90 EMESTFEKLP--DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147
Query: 152 GLERNAMTKL-----------------------------------AREYFVQMPNKDIVA 176
N L A++ F + +++ V
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
+N+++ + G + A +LF M + +V +W AMI A+NG A++ M
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSV-SWAAMIKGLAQNGLAKEAIECFREMKVQGL 266
Query: 237 MPNETTCTSILTSCEGM---LENMLAHALAIRLGFEQE-------TSLTYKCTC-HYVFW 285
++ S+L +C G+ E HA IR F+ + KC C HY
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHY--- 323
Query: 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345
A+ F+R++ K+VVSWTAM++ Y G + ++F M +SG PD T
Sbjct: 324 ----------AKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373
Query: 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
+S C++ +E+G + F+ + G + L + + G + ++ R+ ++M
Sbjct: 374 LGQAISACANVSSLEEGSQ-FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432
Query: 406 PPHERDHVVLGALLGA 421
+ RD V A++ A
Sbjct: 433 --NVRDAVSWTAMVSA 446
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 55/287 (19%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------------- 51
G +++A +LF M + D VS A+MI +N +A FR M
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 52 ---------------------PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
Q +I SA+ID Y K + A+ VFD + + NV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 91 SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMC 150
SWT+++ GY + + +E ++F M ++ + LG A I+ +S
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQ---RSGIDPDHYTLGQA----ISACANVSSLEEG 390
Query: 151 TGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNA 210
+ A+T Y + N+++T Y G++ ++ LFN M R+ +W A
Sbjct: 391 SQFHGKAITSGLIHY--------VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTA 442
Query: 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
M+ YA+ G ++L + M Q P+ T T ++++C G++E
Sbjct: 443 MVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 114/263 (43%), Gaps = 62/263 (23%)
Query: 4 FGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RN 57
+G TG+ +EA K+F +M + PD + I+ L + S
Sbjct: 346 YGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHY 405
Query: 58 IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-- 115
+ ++++ Y K G +D++ ++F+E+ + SWT+++S Y + + E +LFD+M
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQ 465
Query: 116 -PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
LK + V+ T V+ C+ GL+ K + YF M ++
Sbjct: 466 HGLK-PDGVTLTGVISACSRAGLVEK---------------------GQRYFKLMTSE-- 501
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
+ ++P ++ ++ MID ++R+G AM+ +N M
Sbjct: 502 ----------------------YGIVP--SIGHYSCMIDLFSRSGRLEEAMRFINGM--- 534
Query: 235 RFMPNETTCTSILTSC--EGMLE 255
F P+ T++L++C +G LE
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLE 557
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAE 61
+G G + ++T+LF+EM+ D VS +M++ + + + LF M + + + V
Sbjct: 416 YGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTL 475
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYE-----GNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
+ +I +AG V++ ++ F + ++ ++ +I + ++ +++E R + MP
Sbjct: 476 TGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535
Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
+ + WTT++ C + G LE+ W A E +++
Sbjct: 536 FP-PDAIGWTTLLSACRNKG---NLEIGKW---------------AAESLIELDPHHPAG 576
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNV 205
+ + + Y G ++L M ++NV
Sbjct: 577 YTLLSSIYASKGKWDSVAQLRRGMREKNV 605
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 159/494 (32%), Positives = 232/494 (46%), Gaps = 65/494 (13%)
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM-------- 115
++ Y V ARKVFDEI E NV +I Y EG ++F M
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 116 ----PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL----ERNAMTKLAREYFV 167
P LK T+V+G +G K+ + S + GL + AR
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 168 QMPNKDIVAWNAMITAYV----------------------DAGNMAQ------------- 192
+M +D+V+WN+++ Y DAG MA
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259
Query: 193 --ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
++F M ++++ +WN MI Y +N A++L + M F P+ + TS+L +C
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319
Query: 251 EGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDV 308
+ A +L ++ G+ + L D + + AR FE ++++DV
Sbjct: 320 ----GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375
Query: 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368
VSWTAMI AY G G LF+++ SG PD I FV L+ CSHAGL+E+GR F L
Sbjct: 376 VSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL 435
Query: 369 MSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHG 426
M+ Y PR EH +C+ D+L RAG+VKEA R + M P+ER V GALLGACR+H
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNER---VWGALLGACRVHS 492
Query: 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQI 485
D + ++L +L P SG YVL +N++A G W+E +R M+ + +KK S +
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552
Query: 486 EVKGKDHTLLAPMR 499
EV HT L R
Sbjct: 553 EVNRIIHTFLVGDR 566
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 225/444 (50%), Gaps = 27/444 (6%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYS--WTSLISGYFKARQVDEGRRLFDRMPLKL 119
+A+I Y K G V +ARKVF+E + + S + +LISGY +V + +F RM
Sbjct: 92 TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETG 151
Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
+V S T + GL+ V + + L + + ++ N+
Sbjct: 152 VSVDSVTML-------GLVPLCTVPEYLWLGRSLHGQCVKGGL--------DSEVAVLNS 196
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
IT Y+ G++ LF+ MP + + TWNA+I Y++NG ++L M S P+
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
Query: 240 ETTCTSILTSCEGMLENMLAHALAIRL---GFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
T S+L+SC + + H + + GF ++ Y ++ A
Sbjct: 257 PFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCG-----NLAKA 311
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
R F+ + K +VSWTAMI Y HG G LF M+K G +PD FV VLS CSH+
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
GL +KG + F M R Y +P EHYSCL D+L RAG++ EAM + MP E D V G
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPV-EPDGAVWG 430
Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
ALLGAC++H +V MA+ ++IE +P++ G YVL +N+++ + ++R M ER
Sbjct: 431 ALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERA 490
Query: 476 VKKVASFSQIEVKGKDHTLLAPMR 499
+K +S +E KG+ H LA R
Sbjct: 491 FRKKPGYSYVEHKGRVHLFLAGDR 514
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 63/288 (21%)
Query: 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
+ +P ++I+++ + + A +F P+S + V +A+I GY +V +A +F
Sbjct: 85 ETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144
Query: 82 DEIYEGNV------------------YSW---------------------TSLISGYFKA 102
+ E V Y W S I+ Y K
Sbjct: 145 RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC 204
Query: 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT--- 159
V+ GRRLFD MP +K +++W V+ G + NGL + + +G+ + T
Sbjct: 205 GSVEAGRRLFDEMP--VKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262
Query: 160 -----------KLAREY--FVQ----MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202
K+ E V+ +PN + NA I+ Y GN+A+A +F++MP
Sbjct: 263 VLSSCAHLGAKKIGHEVGKLVESNGFVPN--VFVSNASISMYARCGNLAKARAVFDIMPV 320
Query: 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
+++ +W AMI Y +G + L + M + P+ +L++C
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSAC 368
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 33/224 (14%)
Query: 2 SQFGCTGKVKEATKLFDEMSQ----PDPVSCASMITVFLR------NHDLPKAEALFRAM 51
S + G + +L+++M PDP + S+++ H++ K +
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289
Query: 52 PESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111
P N+ +A I Y + G + +AR VFD + ++ SWT++I Y + G L
Sbjct: 290 P----NVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLML 345
Query: 112 FDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169
FD M + + + V+ C+H+GL K GLE + REY ++
Sbjct: 346 FDDMIKRGIRPDGAVFVMVLSACSHSGLTDK-----------GLE--LFRAMKREYKLE- 391
Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNVWTWNAMI 212
P + ++ ++ AG + +A E MP + + W A++
Sbjct: 392 PGPE--HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
L+ ML+SG+ PD +F +L C+ L G++ +++ G + + L +
Sbjct: 40 LYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKG-GCETEPFVLTALISMY 98
Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
+ G V +A +V + P + V AL+ + V A Y+ R+ E
Sbjct: 99 CKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKE 149
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 191/343 (55%), Gaps = 30/343 (8%)
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
A F QM +D+V+W +M+ Y G + A E+F+ MP RN++TW+ MI+ YA+N
Sbjct: 171 AGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCF 230
Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281
A+ L M + + NET S+++SC AH A+ G E + Y H
Sbjct: 231 EKAIDLFEFMKREGVVANETVMVSVISSC--------AHLGALEFG---ERAYEYVVKSH 279
Query: 282 Y------------VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
+FW G D+ A FE L D +SW+++I + HGH +
Sbjct: 280 MTVNLILGTALVDMFWRCG---DIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMH 336
Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
F++M+ G P ++TF VLS CSH GLVEKG + + M + +G +PR EHY C+ D+L
Sbjct: 337 YFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDML 396
Query: 390 RRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
RAG++ EA + KM H + + +LGALLGAC+++ + +A+ +G LI+++P SG
Sbjct: 397 GRAGKLAEAENFILKM--HVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGY 454
Query: 449 YVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGK 490
YVL +N++A G+WD+ +R M E+ VKK +S IE+ GK
Sbjct: 455 YVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGK 497
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 112/224 (50%), Gaps = 22/224 (9%)
Query: 55 QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
Q ++ E++++ Y G + A ++F ++ +V SWTS+++GY K V+ R +FD
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDE 208
Query: 115 MPLKLKNVVSWTTVVLGCAHN----------------GLIAKLEV-ISWTTMCTGLERNA 157
MP +N+ +W+ ++ G A N G++A V +S + C L
Sbjct: 209 MP--HRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALE 266
Query: 158 MTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216
+ A EY V+ +++ A++ + G++ +A +F +P+ + +W+++I A
Sbjct: 267 FGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326
Query: 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML 258
+G AM + M F+P + T T++L++C G++E L
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 119/286 (41%), Gaps = 42/286 (14%)
Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL-- 247
+ A +F+ + N++ +N +I ++ A M +SR P+ T ++
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 248 -TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306
+ E +L H+ +R GF+ + + +++ + GF + +A F ++ +
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLV--HMYANCGF---IAAAGRIFGQMGFR 181
Query: 307 DVVSWTAMILAYSNHG------------------------HGF-------QVFRLFARML 335
DVVSWT+M+ Y G +G+ + LF M
Sbjct: 182 DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK 241
Query: 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395
+ G +E V V+S C+H G +E G + + + +++ + L D+ R G +
Sbjct: 242 REGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDI 300
Query: 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
++A+ V +P E D + +++ +HG A + ++I L
Sbjct: 301 EKAIHVFEGLP--ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISL 344
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 156/524 (29%), Positives = 266/524 (50%), Gaps = 37/524 (7%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQ--RNIV 59
S + G+ +A+KLF MS+ D V+ MI+ ++++ + ++ F M S + +
Sbjct: 282 SMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAI 341
Query: 60 AESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLFDRM 115
S+++ K ++ +++ I +++ ++LI YFK R V + +F +
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ- 400
Query: 116 PLKLKNVVSWTTVVLGCAHNGL-IAKLEVISWTTMCTGLERNAMT--------------K 160
+VV +T ++ G HNGL I LE+ W + N +T K
Sbjct: 401 -CNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVK-VKISPNEITLVSILPVIGILLALK 458
Query: 161 LARE---YFVQ--MPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215
L RE + ++ N+ + A+I Y G M A E+F + +R++ +WN+MI R
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGC-AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRC 517
Query: 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLT 275
A++ AA+ + M S + + ++ L++C + A+ GF + SL
Sbjct: 518 AQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIH---GFMIKHSLA 574
Query: 276 YKCTCHYVFWDWGFQL-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
D + ++ +A F+ ++ K++VSW ++I A NHG LF M
Sbjct: 575 SDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEM 634
Query: 335 L-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393
+ KSG +PD+ITF+ ++S C H G V++G + F M+ YG +P+ EHY+C+ D+ RAG
Sbjct: 635 VEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAG 694
Query: 394 QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453
++ EA V M P D V G LLGACRLH +V +A+ +L++L PS+SG YVL +
Sbjct: 695 RLTEAYETVKSM-PFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLIS 753
Query: 454 NVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
N HA EW+ +VR M ER V+K+ +S IE+ + H ++
Sbjct: 754 NAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVS 797
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 30/385 (7%)
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
+++++ Y K GR D+A K+F + + +W +ISGY ++ ++E F M
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336
Query: 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
L + +++++++ ++K E + + C + M + DI +
Sbjct: 337 LPDAITFSSLLPS------VSKFENLEY---CKQIHCYIMR--------HSISLDIFLTS 379
Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
A+I AY ++ A +F+ +V + AMI Y NG ++++ + + + P
Sbjct: 380 ALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISP 439
Query: 239 NETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295
NE T SIL +L L H I+ GF+ ++ C ++ G +N
Sbjct: 440 NEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI--GCAVIDMYAKCG---RMNL 494
Query: 296 ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
A FERL +D+VSW +MI + + +F +M SG D ++ LS C++
Sbjct: 495 AYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACAN 554
Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
G+ M + + S L D+ + G +K AM V M E++ V
Sbjct: 555 LPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTM--KEKNIVSW 611
Query: 416 GALLGACRLHGDVRMADYIGERLIE 440
+++ AC HG ++ + + ++E
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVE 636
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 160/373 (42%), Gaps = 34/373 (9%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD--R 114
N S++I Y++ G++D K+FD + + + W +++GY K +D + F R
Sbjct: 172 NEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMR 231
Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
M N V++ V+ CA LI + + +G++ K
Sbjct: 232 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK-------------- 277
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234
N++++ Y G AS+LF +M + + TWN MI Y ++G ++ M S
Sbjct: 278 ---NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS 334
Query: 235 RFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
+P+ T +S+L S EN+ H +R + LT D F+
Sbjct: 335 GVLPDAITFSSLLPSVSK-FENLEYCKQIHCYIMRHSISLDIFLT------SALIDAYFK 387
Query: 291 L-DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
V+ A+ F + + DVV +TAMI Y ++G +F ++K P+EIT V +
Sbjct: 388 CRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSI 447
Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
L ++ GR+ + + GF R + D+ + G++ A + ++ +
Sbjct: 448 LPVIGILLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL--SK 504
Query: 410 RDHVVLGALLGAC 422
RD V +++ C
Sbjct: 505 RDIVSWNSMITRC 517
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 29/308 (9%)
Query: 69 VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
++ G+ A + + I G+ Y+ ++ Y + ++F R+ L+ ++ W ++
Sbjct: 51 LRQGKQVHAFLIVNSI-SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSI 109
Query: 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMT-------KLAREYF------------VQM 169
+ NGL+ + + +C G+ + T +A + F + M
Sbjct: 110 ISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGM 169
Query: 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229
+ VA +++I AY++ G + S+LF+ + Q++ WN M++ YA+ G + +K +
Sbjct: 170 DCNEFVA-SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS 228
Query: 230 LMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD 286
+M + PN T +L+ C L L H L + G + E S+ K + ++
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI--KNSLLSMYSK 286
Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
G + A F + D V+W MI Y G + F M+ SG PD ITF
Sbjct: 287 CG---RFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343
Query: 347 VGVLSDCS 354
+L S
Sbjct: 344 SSLLPSVS 351
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 234/486 (48%), Gaps = 58/486 (11%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
N + + +I Y+K G+ +A KVFD+++ N+YSW +++SGY K+ + R +FD MP
Sbjct: 81 NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140
Query: 117 LKLKNVVSWTTVVLGCAHNGLI--------------AKLEVISWTTMCTGLERNAMTKLA 162
+ +VVSW T+V+G A +G + K S+ + T ++ +L
Sbjct: 141 ER--DVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLN 198
Query: 163 REY-----------------------------------FVQMPNKDIVAWNAMITAYVDA 187
R+ F +M KDI W +I+ Y
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258
Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
G+M A +LF MP++N +W A+I Y R G A+ L M P + T +S L
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL 318
Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDVNSARLAFERLEAK 306
C L H I G+ T++ D + + ++ F + K
Sbjct: 319 --CASASIASLRHGKEIH-GYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDK 375
Query: 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365
D V W MI A + HG G + R+ M+K +P+ T V +L+ CSH+GLVE+G +
Sbjct: 376 HDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRW 435
Query: 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425
F M+ +G P EHY+CL D+L RAG KE MR + +M P E D + A+LG CR+H
Sbjct: 436 FESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEM-PFEPDKHIWNAILGVCRIH 494
Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQ 484
G+ + + LI+L P SS Y+L ++++A G+W+ ++R M +RRV K + S
Sbjct: 495 GNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSW 554
Query: 485 IEVKGK 490
IE++ K
Sbjct: 555 IEIEKK 560
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 59/258 (22%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G+++ A + FDEM+ D ++I+ + + D+ AE LF MPE +N V+ +A+I G
Sbjct: 228 GQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPE--KNPVSWTALIAG 285
Query: 68 YVKAGRVDEARKVFDEIYEGNV----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
YV+ G + A +F ++ V ++++S + + G+ + M
Sbjct: 286 YVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYM-------- 337
Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA 183
+ T + NA + +++I
Sbjct: 338 -------------------------IRTNVRPNA-----------------IVISSLIDM 355
Query: 184 YVDAGNMAQASELFNLMPQR-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
Y +G++ + +F + + + WN MI A++G A+++L+ M + R PN TT
Sbjct: 356 YSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTT 415
Query: 243 CTSILTSC--EGMLENML 258
IL +C G++E L
Sbjct: 416 LVVILNACSHSGLVEEGL 433
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 119/303 (39%), Gaps = 79/303 (26%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PES- 54
S + G ++ A KLF EM + +PVS ++I ++R +A LFR M PE
Sbjct: 253 SGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQF 312
Query: 55 ------------------------------QRNIVAESAMIDGYVKAGRVDEARKVF--- 81
+ N + S++ID Y K+G ++ + +VF
Sbjct: 313 TFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRIC 372
Query: 82 DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVL---GCAHNGLI 138
D+ ++ W ++IS + + R+ D M +K + + TT+V+ C+H+GL+
Sbjct: 373 DDKHD--CVFWNTMISALAQHGLGHKALRMLDDM-IKFRVQPNRTTLVVILNACSHSGLV 429
Query: 139 AKLEVISWTTMCT----------------------GLERNAMTKLAREYFVQMPNKDIVA 176
E + W T G + M K+ F P+K I
Sbjct: 430 E--EGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPF--EPDKHI-- 483
Query: 177 WNAMITAYVDAGN----MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
WNA++ GN A EL L P+ + + + YA +G KL +M
Sbjct: 484 WNAILGVCRIHGNEELGKKAADELIKLDPESSA-PYILLSSIYADHGKWELVEKLRGVMK 542
Query: 233 QSR 235
+ R
Sbjct: 543 KRR 545
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/483 (30%), Positives = 245/483 (50%), Gaps = 46/483 (9%)
Query: 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
D C +++++ + D P A A++ M ++N ++ + +I+GYV+AG + ARKVFDE
Sbjct: 78 DKFICNHLMSMYSKLGDFPSAVAVYGRM--RKKNYMSSNILINGYVRAGDLVNARKVFDE 135
Query: 84 IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT--TVVLGCAHNGLIAKL 141
+ + + +W ++I+G + +EG LF M + +T +V G A ++
Sbjct: 136 MPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG 195
Query: 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201
+ I T+ GLE D+V +++ Y+ G + + MP
Sbjct: 196 QQIHGYTIKYGLEL-----------------DLVVNSSLAHMYMRNGKLQDGEIVIRSMP 238
Query: 202 QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML---ENML 258
RN+ WN +I A+NG + L +M S PN+ T ++L+SC + +
Sbjct: 239 VRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ 298
Query: 259 AHALAIRLGFEQE-------TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
HA AI++G S+ KC C + A AF E +D V W
Sbjct: 299 IHAEAIKIGASSVVAVVSSLISMYSKCGC------------LGDAAKAFSEREDEDEVMW 346
Query: 312 TAMILAYSNHGHGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
++MI AY HG G + LF M ++ + +E+ F+ +L CSH+GL +KG + F++M
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMV 406
Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRM 430
YGFKP +HY+C+ D+L RAG + +A ++ MP + D V+ LL AC +H + M
Sbjct: 407 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEM 465
Query: 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKG 489
A + + ++++ P+ S YVL ANVHA+ W + ++VRK M ++ VKK A S E KG
Sbjct: 466 AQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKG 525
Query: 490 KDH 492
+ H
Sbjct: 526 EVH 528
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
S+ GC G +A K F E D V +SMI+ + + +A LF M E + E
Sbjct: 323 SKCGCLG---DAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINE 379
Query: 62 SAMID---GYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFD 113
A ++ +G D+ ++FD + E + +T ++ +A +D+ +
Sbjct: 380 VAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIR 439
Query: 114 RMPLKLKNVVSWTTVVLGC 132
MP+K ++V W T++ C
Sbjct: 440 SMPIK-TDIVIWKTLLSAC 457
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/443 (32%), Positives = 223/443 (50%), Gaps = 26/443 (5%)
Query: 77 ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAH 134
A+ VFD + + W +I G+ + + + L+ RM N ++ +++ C++
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 135 ----------NGLIAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
+ I KL +V + ++ KLA F ++P D V+WN++
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
I YV AG M A LF M ++N +W MI Y + A++L + M S P+
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 241 TTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
+ + L++C G LE H+ + ++ L C ++ G ++ A
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG--CVLIDMYAKCG---EMEEAL 302
Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
F+ ++ K V +WTA+I Y+ HGHG + F M K G KP+ ITF VL+ CS+ G
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
LVE+G+ F M R Y KP EHY C+ D+L RAG + EA R + +MP + + V+ GA
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPL-KPNAVIWGA 421
Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRV 476
LL ACR+H ++ + + IGE LI + P G YV AN+HA +WD+ A+ R+ M E+ V
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 477 KKVASFSQIEVKGKDHTLLAPMR 499
KV S I ++G H LA R
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDR 504
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVF 81
+ D + S+I + + A LF +PE + V+ +++I GYVKAG++D A +F
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEP--DDVSWNSVIKGYVKAGKMDIALTLF 204
Query: 82 DEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLI 138
++ E N SWT++ISGY +A E +LF M ++ N VS + CA G
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN-VSLANALSACAQLG-- 261
Query: 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198
LE W R M D V +I Y G M +A E+F
Sbjct: 262 -ALEQGKWIHSYLNKTRIRM--------------DSVLGCVLIDMYAKCGEMEEALEVFK 306
Query: 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE 255
+ +++V W A+I YA +G A+ M + PN T T++LT+C G++E
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 172/580 (29%), Positives = 271/580 (46%), Gaps = 96/580 (16%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE-------------- 53
G+ ++A +LFDEM + + VS +++T +RN D+ KA+ +F AMP
Sbjct: 152 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 211
Query: 54 ---------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98
S++N+V ++M+ GY + G V EA ++F E+ E N+ SWT++ISG
Sbjct: 212 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 271
Query: 99 YFKARQVDEGRRLFDRMPLKLKNVV--SWTTVVLGCAHNGLIAKL---------EVIS-- 145
+ E LF M + V T + L A GL + +VIS
Sbjct: 272 FAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNG 331
Query: 146 WTTM---------------CTGLERNAMTKLAREYFVQMPN------------------- 171
W T+ +GL +A + L + +Q N
Sbjct: 332 WETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLF 391
Query: 172 ------KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225
D V+W +MI Y++AG++++A LF + ++ TW MI +N A
Sbjct: 392 ERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAA 451
Query: 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENM----LAHALAIRLGFEQETSLTYKCTCH 281
LL+ M + P +T S+L S G N+ H + + + L + +
Sbjct: 452 SLLSDMVRCGLKPLNST-YSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLV 510
Query: 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341
++ G + A F ++ KD VSW +MI+ S+HG + LF ML SG KP
Sbjct: 511 SMYAKCG---AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKP 567
Query: 342 DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRV 401
+ +TF+GVLS CSH+GL+ +G + F M Y +P +HY + D+L RAG++KEA
Sbjct: 568 NSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEF 627
Query: 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGE----RLIELQPSSSGAYVLSANVHA 457
+S + P DH V GALLG C L+ + A+ I E RL+EL P ++ +V NV+A
Sbjct: 628 ISAL-PFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYA 686
Query: 458 ARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLA 496
G D ++RK+M + VKK S + V G+ + L+
Sbjct: 687 GLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLS 726
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 131/501 (26%), Positives = 217/501 (43%), Gaps = 90/501 (17%)
Query: 8 GKVKEATKLFDEMSQPDPVS----CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
G + A L D++ Q ++ S+++ + + L +A LF MPE RNIV +A
Sbjct: 56 GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPE--RNIVTCNA 113
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
M+ GYVK R++EA +F E+ + NV SWT +++ + ++ LFD MP + NVV
Sbjct: 114 MLTGYVKCRRMNEAWTLFREMPK-NVVSWTVMLTALCDDGRSEDAVELFDEMPER--NVV 170
Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
SW T+V G NG + K +V+SW M G N + A+ F M K+
Sbjct: 171 SWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKN 230
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
+V W +M+ Y G++ +A LF MP+RN+ +W AMI +A N A+ L M +
Sbjct: 231 VVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKK 290
Query: 234 --SRFMPNETTCTSILTSCEGM------LENMLAHALAIRLGFEQ-------ETSLTYKC 278
PN T S+ +C G+ L L HA I G+E SL +
Sbjct: 291 DVDAVSPNGETLISLAYACGGLGVEFRRLGEQL-HAQVISNGWETVDHDGRLAKSLVHMY 349
Query: 279 --------------------TCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILA 317
+C+ + + D+ A FER+++ D VSWT+MI
Sbjct: 350 ASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDG 409
Query: 318 YSNHGHGFQVFRLFAR-------------------------------MLKSGTKPDEITF 346
Y G + F LF + M++ G KP T+
Sbjct: 410 YLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTY 469
Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYG-FKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
+LS +++G+ ++++ + P + L + + G +++A + +KM
Sbjct: 470 SVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKM 529
Query: 406 PPHERDHVVLGALLGACRLHG 426
++D V +++ HG
Sbjct: 530 V--QKDTVSWNSMIMGLSHHG 548
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 154/539 (28%), Positives = 265/539 (49%), Gaps = 44/539 (8%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G++ EA ++FDE+ +PD V+ +SM++ F +N +A FR M + +I
Sbjct: 110 GRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITL 169
Query: 68 YVKAGRVDEARK-------VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
++ +R V + ++ SL++ Y K+R E LF + K
Sbjct: 170 VSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKM--IAEK 227
Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL------AREYFVQMPNK-- 172
+V+SW+TV+ NG A+ ++ M G E N T L A + ++ K
Sbjct: 228 DVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTH 287
Query: 173 ----------DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
++ A++ Y+ + +A +F+ +P+++V +W A+I + NG
Sbjct: 288 ELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAH 347
Query: 223 AAMKLLNLMF-QSRFMPNETTCTSILTSCE--GMLENMLA-HALAIRLGFEQETSLTYKC 278
+++ ++M ++ P+ +L SC G LE H+ I+ GF+ +
Sbjct: 348 RSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASL 407
Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
Y + +A F + KD V WT++I Y HG G + F M+KS
Sbjct: 408 VELYSRCG-----SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSS 462
Query: 339 -TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
KP+E+TF+ +LS CSHAGL+ +G + F LM Y P EHY+ L D+L R G +
Sbjct: 463 EVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDT 522
Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457
A+ + +MP +LG LLGACR+H + MA+ + ++L EL+ + +G Y+L +NV+
Sbjct: 523 AIEITKRMPFSPTPQ-ILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYG 581
Query: 458 ARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
+GEW+ ++R +++R +KK + S IE++ K H +A P +E Y +LKE+D
Sbjct: 582 VKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELD 640
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 173/370 (46%), Gaps = 28/370 (7%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
S++I Y+K GR+ EA ++FDE+ + ++ +W+S++SG+ K + F RM +
Sbjct: 100 SSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM---- 155
Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAM 180
A + ++ +I+ + CT L + + + + ++ + D+ N++
Sbjct: 156 -----------ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSL 204
Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
+ Y + +A LF ++ +++V +W+ +I Y +NG A+ + N M PN
Sbjct: 205 LNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNV 264
Query: 241 TTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
T +L +C + + H LAIR G E E ++ Y+ A
Sbjct: 265 ATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC-----FSPEEAY 319
Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHA 356
F R+ KDVVSW A+I ++ +G + F+ M L++ T+PD I V VL CS
Sbjct: 320 AVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSEL 379
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
G +E+ K F+ YGF + L ++ R G + A +V + + +D VV
Sbjct: 380 GFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL--KDTVVWT 436
Query: 417 ALLGACRLHG 426
+L+ +HG
Sbjct: 437 SLITGYGIHG 446
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 26/355 (7%)
Query: 76 EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135
+AR++F E+ + ++Y W +L+ + +Q +E F M + ++T V A
Sbjct: 12 DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKA-- 69
Query: 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASE 195
+L +++ M G + +T D+ +++I Y+ G M +A
Sbjct: 70 --CGELREVNYGEMIHGFVKKDVT----------LGSDLYVGSSLIYMYIKCGRMIEALR 117
Query: 196 LFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM-FQSRFMPNETTCTSILTSCEGML 254
+F+ + + ++ TW++M+ + +NG A++ M S P+ T +++++C +
Sbjct: 118 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLS 177
Query: 255 ENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
+ L H IR GF + SL Y F+ VN F+ + KDV+SW
Sbjct: 178 NSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYA-KSRAFKEAVN----LFKMIAEKDVISW 232
Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371
+ +I Y +G + +F M+ GT+P+ T + VL C+ A +E+GRKT L R
Sbjct: 233 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 292
Query: 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
G + + + L D+ + +EA V S++P +D V AL+ L+G
Sbjct: 293 K-GLETEVKVSTALVDMYMKCFSPEEAYAVFSRIP--RKDVVSWVALISGFTLNG 344
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 251/500 (50%), Gaps = 31/500 (6%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPE--SQRNIVAESAMI 65
GK+K+A ++ + S P + +I L A + R + + S ++ + +I
Sbjct: 60 GKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLI 119
Query: 66 DGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLF---DRMPLKLKNV 122
Y G VD ARKVFD+ + +Y W +L A +E L+ +R+ ++ +
Sbjct: 120 GMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE-SDR 178
Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
++T V+ C + + G E +A L R + + + ++
Sbjct: 179 FTYTYVLKACVASECTV-------NHLMKGKEIHA--HLTRRGY----SSHVYIMTTLVD 225
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNE 240
Y G + AS +F MP RNV +W+AMI YA+NG A++ M + PN
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285
Query: 241 TTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297
T S+L +C + + L H +R G + + Y G + +
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMY-----GRCGKLEVGQ 340
Query: 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357
F+R+ +DVVSW ++I +Y HG+G + ++F ML +G P +TFV VL CSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417
LVE+G++ F M R +G KP+ EHY+C+ D+L RA ++ EA ++V M E V G+
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT-EPGPKVWGS 459
Query: 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-V 476
LLG+CR+HG+V +A+ RL L+P ++G YVL A+++A WDE +V+K +E R +
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519
Query: 477 KKVASFSQIEVKGKDHTLLA 496
+K+ +EV+ K ++ ++
Sbjct: 520 QKLPGRCWMEVRRKMYSFVS 539
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 2 SQFGCTGKVKEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--- 54
S +G G K+A ++F+EM + P PV+ S++ + + + LF M
Sbjct: 359 SSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGI 418
Query: 55 QRNIVAESAMIDGYVKAGRVDEARKVFDEI-YEGNVYSWTSLISGYFKARQVD----EGR 109
+ I + M+D +A R+DEA K+ ++ E W SL+ V+ R
Sbjct: 419 KPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASR 478
Query: 110 RLFDRMPLKLKNVV 123
RLF P N V
Sbjct: 479 RLFALEPKNAGNYV 492
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 222 bits (565), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/495 (31%), Positives = 254/495 (51%), Gaps = 42/495 (8%)
Query: 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD----EIYE 86
++T++ + + A LF MP RN ++ + MI G+ + + A K+F+ E ++
Sbjct: 199 LLTLYPKAGRMGDAYNLFVEMP--VRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFK 256
Query: 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLG---CAHNGLIAKLEV 143
+ +WTS++S + + + ++ + F M + N VS + + CA ++ E
Sbjct: 257 PDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMS-GNAVSGEALAVFFSVCAELEALSIAEK 315
Query: 144 ISWTTMCTGLE-----RNAM---------TKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
+ + G E RNA+ K A F Q+ NK I +WN++IT++VDAG
Sbjct: 316 VHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGK 375
Query: 190 MAQASELFNLMPQRN--------VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET 241
+ +A LF+ + + N V TW ++I G +++ M S+ + N
Sbjct: 376 LDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSV 435
Query: 242 TCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
T IL+ C + L H IR + + Y G ++ L
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYA--KCGL---LSEGSL 490
Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
FE + KD++SW ++I Y HG + +F RM+ SG PD I V VLS CSHAGL
Sbjct: 491 VFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGL 550
Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL 418
VEKGR+ F MS+ +G +P+ EHY+C+ D+L R G +KEA +V M P E VLGAL
Sbjct: 551 VEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNM-PMEPKVCVLGAL 609
Query: 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR-KKMERRVK 477
L +CR+H +V +A+ I +L L+P +G+Y+L +N+++A G W+E A VR ++ +K
Sbjct: 610 LNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLK 669
Query: 478 KVASFSQIEVKGKDH 492
KV+ S IEVK K +
Sbjct: 670 KVSGSSWIEVKKKKY 684
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 67/290 (23%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
+G GKVK+A LF ++ S S+IT F
Sbjct: 339 YGKQGKVKDAEHLFRQIRNKGIESWNSLITSF---------------------------- 370
Query: 64 MIDGYVKAGRVDEARKVFDEIYE--------GNVYSWTSLISGYFKARQVDEGRRLFDRM 115
V AG++DEA +F E+ E NV +WTS+I G + D+ F +M
Sbjct: 371 -----VDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425
Query: 116 PLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG-LERNAMTKLAREYFVQMPNK 172
L N V+ ++ C A+L ++ G + R +M+ +
Sbjct: 426 QFSKVLANSVTICCILSIC------AELPALNLGREIHGHVIRTSMS------------E 467
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
+I+ NA++ Y G +++ S +F + +++ +WN++I Y +G A+ + + M
Sbjct: 468 NILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMI 527
Query: 233 QSRFMPNETTCTSILTSCE--GMLEN--MLAHALAIRLGFEQETSLTYKC 278
S F P+ ++L++C G++E + ++++ R G E + Y C
Sbjct: 528 SSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQE-HYAC 576
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 137/353 (38%), Gaps = 69/353 (19%)
Query: 64 MIDGYVKAGRVDEARKVFDEI---YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
+I Y + G + +AR VF+ + ++ W S++ + L+ M +
Sbjct: 95 LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQR-- 152
Query: 121 NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK-DIVAWNA 179
G +G I L + C L R + + +Q+ K ++ N
Sbjct: 153 ----------GLTGDGYILPLIL----RACRYLGRFGLCRAFHTQVIQIGLKENLHVVNE 198
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
++T Y AG M A LF MP RN +WN MI +++ +A+K+ M + F P+
Sbjct: 199 LLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPD 258
Query: 240 ETTCTSILTSCE---GMLENML------------------------------------AH 260
E T TS+L SC G E++L H
Sbjct: 259 EVTWTSVL-SCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVH 317
Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
I+ GFE+ Y + + + +G Q V A F ++ K + SW ++I ++ +
Sbjct: 318 GYVIKGGFEE-----YLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVD 372
Query: 321 HGHGFQVFRLFARMLK----SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
G + LF+ + + K + +T+ V+ C+ G + + F M
Sbjct: 373 AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 246/476 (51%), Gaps = 43/476 (9%)
Query: 55 QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
Q +I SA+I Y G++++ARKVFDEI + N+ SWTS+I GY + LF
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167
Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKD 173
+ + + + + ++S + C+ + +T+ + ++ ++
Sbjct: 168 LLVDENDDDDAM----------FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRG 217
Query: 174 IVAWNAMITAYVDA--GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
+ N ++ AY G +A A ++F+ + ++ ++N+++ YA++G A ++ +
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 232 FQSRFMP-NETTCTSIL--TSCEGMLE-NMLAHALAIRLGFEQE-----TSLTYKCTCHY 282
+++ + N T +++L S G L H IR+G E + + + C C
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 283 VFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD 342
V +AR AF+R++ K+V SWTAMI Y HGH + LF M+ SG +P+
Sbjct: 338 ----------VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387
Query: 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402
ITFV VL+ CSHAGL +G + FN M +G +P EHY C+ D+L RAG +++A ++
Sbjct: 388 YITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447
Query: 403 S--KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
KM P D ++ +LL ACR+H +V +A+ RL EL S+ G Y+L ++++A G
Sbjct: 448 QRMKMKP---DSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504
Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
W + +VR M+ R + K FS +E+ G+ H L P RE Y L E++
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELN 560
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 67/296 (22%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALF--------------- 48
+ GK+++A K+FDE+ + + VS SMI + N + A +LF
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180
Query: 49 ------------------RAMPES----------QRNIVAESAMIDGYVKAGR--VDEAR 78
+ + ES R + + ++D Y K G V AR
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVAR 240
Query: 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK----NVVSWTTVVLGCAH 134
K+FD+I + + S+ S++S Y ++ +E +F R+ +K K N ++ +TV+L +H
Sbjct: 241 KIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL-VKNKVVTFNAITLSTVLLAVSH 299
Query: 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQAS 194
+G + + I + GLE D++ ++I Y G + A
Sbjct: 300 SGALRIGKCIHDQVIRMGLE-----------------DDVIVGTSIIDMYCKCGRVETAR 342
Query: 195 ELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
+ F+ M +NV +W AMI Y +G A++L M S PN T S+L +C
Sbjct: 343 KAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 149/326 (45%), Gaps = 39/326 (11%)
Query: 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTM------------------CTG 152
LF+R K +V SW +V+ A +G A+ ++++++M C+
Sbjct: 31 LFNRYVDK-TDVFSWNSVIADLARSGDSAE-ALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Query: 153 L-ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211
L + + + ++ FV DI +A+I Y G + A ++F+ +P+RN+ +W +M
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 212 IDRYARNGPEGAAMKLLNLMF------QSRFMPNETTCTSILTSC-----EGMLENMLAH 260
I Y NG A+ L + + S++++C +G+ E++ H
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI--H 206
Query: 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN 320
+ I+ GF++ S+ Y G + V AR F+++ KD VS+ +++ Y+
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYA---KGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263
Query: 321 HGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
G + F +F R++K+ + IT VL SH+G + G+ + + R G +
Sbjct: 264 SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDV 322
Query: 380 EHYSCLADILRRAGQVKEAMRVVSKM 405
+ + D+ + G+V+ A + +M
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRM 348
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 194 SELFN-LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252
+ LFN + + +V++WN++I AR+G A+ + M + P ++ + +C
Sbjct: 29 TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Query: 253 MLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
+ + H A G++ + ++ Y + AR F+ + +++V
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-----KLEDARKVFDEIPKRNIV 143
Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF------VGVLSDCSHA---GLVE 360
SWT+MI Y +G+ LF +L D+ F V V+S CS GL E
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/422 (31%), Positives = 213/422 (50%), Gaps = 34/422 (8%)
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVIS 145
E +++ T+LI Y V+ R++FD M N+V+W V+ C +A
Sbjct: 138 ESHLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAVITACFRGNDVAG----- 190
Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
ARE F +M ++ +WN M+ Y+ AG + A +F+ MP R+
Sbjct: 191 ----------------AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDD 234
Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHAL 262
+W+ MI A NG + + ++ PNE + T +L++C G E + H
Sbjct: 235 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 294
Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD-VVSWTAMILAYSNH 321
+ G+ S+ Y +V ARL FE ++ K +VSWT+MI + H
Sbjct: 295 VEKAGYSWIVSVNNALIDMYSRCG-----NVPMARLVFEGMQEKRCIVSWTSMIAGLAMH 349
Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
G G + RLF M G PD I+F+ +L CSHAGL+E+G F+ M R Y +P EH
Sbjct: 350 GQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEH 409
Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
Y C+ D+ R+G++++A + +MP +V LLGAC HG++ +A+ + +RL EL
Sbjct: 410 YGCMVDLYGRSGKLQKAYDFICQMPI-PPTAIVWRTLLGACSSHGNIELAEQVKQRLNEL 468
Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
P++SG VL +N +A G+W + A +RK M +R+KK ++S +EV + A ++
Sbjct: 469 DPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKK 528
Query: 501 MG 502
G
Sbjct: 529 KG 530
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
+G G V+ A K+FDEM QP+ V+ ++IT R +D+ A +F M RN + +
Sbjct: 151 YGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKML--VRNHTSWNV 208
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKN 121
M+ GY+KAG ++ A+++F E+ + SW+++I G +E F + N
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 268
Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
VS T V+ C+ +G +++ + K + V + NA+I
Sbjct: 269 EVSLTGVLSACSQSGSFEFGKIL----------HGFVEKAGYSWIVSVN-------NALI 311
Query: 182 TAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240
Y GN+ A +F M + R + +W +MI A +G A++L N M P+
Sbjct: 312 DMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDG 371
Query: 241 TTCTSILTSCE--GMLE 255
+ S+L +C G++E
Sbjct: 372 ISFISLLHACSHAGLIE 388
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 14/236 (5%)
Query: 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
C S+L SC+ + H L I+ G + ++ T K H + AR
Sbjct: 8 CLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAI---SISDALPYARRLLLC 64
Query: 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEK 361
D + ++ YS +F M++ G PD +F V+ + +
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 362 GRKTFNLMSRA--YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
G F + +A +G + + L + G V+ A +V +M H+ + V A++
Sbjct: 125 G---FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPNLVAWNAVI 179
Query: 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
AC DV A I ++++ ++ +S +L+ + A GE + ++ +M R
Sbjct: 180 TACFRGNDVAGAREIFDKML-VRNHTSWNVMLAGYIKA--GELESAKRIFSEMPHR 232
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 192/352 (54%), Gaps = 26/352 (7%)
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG-P 220
A++ F +MP + +V+ AMIT Y GN+ A LF+ M +R++ +WN MID YA++G P
Sbjct: 180 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFP 239
Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-----NMLAHALAIRLGFEQETS 273
A M L+ + + P+E T + L++C G LE ++ + IRL + T
Sbjct: 240 NDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTG 299
Query: 274 LT---YKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
L KC + A L F KD+V+W AMI Y+ HG+ RL
Sbjct: 300 LIDMYSKCG------------SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRL 347
Query: 331 FARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
F M +G +P +ITF+G L C+HAGLV +G + F M + YG KP+ EHY CL +L
Sbjct: 348 FNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL 407
Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
RAGQ+K A + M + D V+ ++LG+C+LHGD + I E LI L +SG Y
Sbjct: 408 GRAGQLKRAYETIKNM-NMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466
Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLAPMRE 500
VL +N++A+ G+++ A+VR M E+ + K S IE++ K H A RE
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83
DP ++ V+ + D+ A+ +F MPE R++V+ +AMI Y K G V+ AR +FD
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPE--RSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 84 IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEV 143
+ E ++ SW +I GY + ++ LF ++ + K TVV + I LE
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 144 ISW-------------TTMCTGL----ERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD 186
W +CTGL + + A F P KDIVAWNAMI Y
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 187 AGNMAQASELFNLM 200
G A LFN M
Sbjct: 338 HGYSQDALRLFNEM 351
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 41/276 (14%)
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
AY G + + LF+ +++ + A I+ + NG + A L + S PNE T
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 243 CTSILTSCEGMLENML-AHALAIRLGFE---------------------------QETSL 274
+S+L SC ++ H L LG + E SL
Sbjct: 133 FSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSL 192
Query: 275 ---TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331
T TC + Q +V +AR F+ + +D+VSW MI Y+ HG LF
Sbjct: 193 VSSTAMITC------YAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 332 ARMLKSGT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
++L G KPDEIT V LS CS G +E GR ++ ++ + + + L D+
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGR-WIHVFVKSSRIRLNVKVCTGLIDMYS 305
Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426
+ G ++EA+ V + P +D V A++ +HG
Sbjct: 306 KCGSLEEAVLVFNDTP--RKDIVAWNAMIAGYAMHG 339
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 300 FERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359
F + D+ +TA I S +G Q F L+ ++L S P+E TF +L CS
Sbjct: 87 FHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----- 141
Query: 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419
K K + +G + L D+ + G V A +V +MP ER V A++
Sbjct: 142 TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP--ERSLVSSTAMI 199
Query: 420 GACRLHGDVRMADYIGERLIE 440
G+V A + + + E
Sbjct: 200 TCYAKQGNVEAARALFDSMCE 220
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 266/525 (50%), Gaps = 39/525 (7%)
Query: 10 VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
V A K+F+ M + D + +M++ F ++ KA +LFR M ++ I +S + +
Sbjct: 103 VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNE--ITPDSVTVMTLI 160
Query: 70 KAGRVDEARKVFDEIY--------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
++ +++ K+ + ++ + V + IS Y K +D + +F+ + +
Sbjct: 161 QSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRT 220
Query: 122 VVSWTTV-----VLGCAHNG-----LIAKLEV-------ISWTTMCTGLERNAMTKLARE 164
VVSW ++ V G A + L+ + E I+ C E +L
Sbjct: 221 VVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHS 280
Query: 165 YFVQM-PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
+ + + ++DI A N I+ Y + + A LF++M R +W MI YA G
Sbjct: 281 HAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDE 340
Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN-MLAHALAIRLGFEQETSLTYKCTC 280
A+ L + M +S P+ T S+++ C G LE A A G +++ + C
Sbjct: 341 ALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMI----C 396
Query: 281 HYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340
+ + + ++ AR F+ K VV+WT MI Y+ +G + +LF++M+ K
Sbjct: 397 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 456
Query: 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400
P+ ITF+ VL C+H+G +EKG + F++M + Y P +HYSC+ D+L R G+++EA+
Sbjct: 457 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALE 516
Query: 401 VVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460
++ M + D + GALL AC++H +V++A+ E L L+P + YV AN++AA G
Sbjct: 517 LIRNMSA-KPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAG 575
Query: 461 EWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLAPMREMGYV 504
WD FA++R M++R +KK S I+V GK+H+ + E G+V
Sbjct: 576 MWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSF--TVGEHGHV 618
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 193/428 (45%), Gaps = 40/428 (9%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ +A +D +VK VD A KVF+ + E + +W +++SG+ ++ D+ LF M
Sbjct: 86 DVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMR 145
Query: 117 LK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
L + V+ T++ + + LE + + G++ VQ +
Sbjct: 146 LNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVD------------VQ-----V 188
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
N I+ Y G++ A +F + + R V +WN+M Y+ G A L LM
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248
Query: 233 QSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
+ F P+ +T ++ SC E + + L H+ AI LG +Q+ Y
Sbjct: 249 REEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMY-----SK 303
Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
D SARL F+ + ++ VSWT MI Y+ G + LF M+KSG KPD +T + +
Sbjct: 304 SEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSL 363
Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC--LADILRRAGQVKEAMRVVSKMPP 407
+S C G +E G K + + YG K R C L D+ + G + EA + P
Sbjct: 364 ISGCGKFGSLETG-KWIDARADIYGCK-RDNVMICNALIDMYSKCGSIHEARDIFDNTP- 420
Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIEL--QPSS-SGAYVLSANVHAARGE--W 462
E+ V ++ L+G A + ++I+L +P+ + VL A H+ E W
Sbjct: 421 -EKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479
Query: 463 DEFAQVRK 470
+ F +++
Sbjct: 480 EYFHIMKQ 487
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 150 CTGLERNAMTKLAREYFVQMPN-KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTW 208
C L ++ + ++ P D+ A + +V ++ A+++F MP+R+ TW
Sbjct: 62 CARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTW 121
Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-----GMLENMLAHALA 263
NAM+ + ++G A L M + P+ T +++ S +LE M HA+
Sbjct: 122 NAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAM--HAVG 179
Query: 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD--VVSWTAMILAYSNH 321
IRLG + + ++ Y G D++SA+L FE ++ D VVSW +M AYS
Sbjct: 180 IRLGVDVQVTVANTWISTY-----GKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVF 234
Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363
G F F L+ ML+ KPD TF+ + + C + + +GR
Sbjct: 235 GEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGR 276
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 196 LFNLMPQRNVWTWNAMI-DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254
L+ + +V WN I + RN P ++ L M + F PN T + +C +
Sbjct: 8 LYRISGLSSVNAWNLQIREAVNRNDPV-ESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66
Query: 255 E---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSW 311
+ + HA I+ F + + +V + V+ A FER+ +D +W
Sbjct: 67 DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCN-----SVDYAAKVFERMPERDATTW 121
Query: 312 TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354
AM+ + GH + F LF M + PD +T + ++ S
Sbjct: 122 NAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSAS 164
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 160/557 (28%), Positives = 265/557 (47%), Gaps = 91/557 (16%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRN----------------------------- 38
G++ A K+FDEMS+ + VS SMI + R
Sbjct: 183 GELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCV 242
Query: 39 -------HDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
DL E ++ + S + N + SA++D Y+K +D A+++FDE N+
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRM------PLKLKNVVSWTT------VVLGCAHNGL 137
++ S Y + E +F+ M P ++ + + ++ ++ G + +G
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGY 362
Query: 138 IAKLEVISWTTMCTGLERNAM----TKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
+ + SW +C L M A F +M NK +V WN+++ YV+ G + A
Sbjct: 363 VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAA 422
Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL-NLMFQSRFMPNETTCTSILTSCEG 252
E F MP++N+ +WN +I + A+++ ++ Q + T SI ++C
Sbjct: 423 WETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC-- 480
Query: 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----------------NSA 296
H A+ L K +Y+ + G QLDV SA
Sbjct: 481 ------GHLGALDLA---------KWIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESA 524
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
F L +DV +WTA I A + G+ + LF M++ G KPD + FVG L+ CSH
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
GLV++G++ F M + +G P HY C+ D+L RAG ++EA++++ MP D V+
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND-VIWN 643
Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERR 475
+LL ACR+ G+V MA Y E++ L P +G+YVL +NV+A+ G W++ A+VR M E+
Sbjct: 644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 703
Query: 476 VKKVASFSQIEVKGKDH 492
++K S I+++GK H
Sbjct: 704 LRKPPGTSSIQIRGKTH 720
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 160/384 (41%), Gaps = 53/384 (13%)
Query: 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM 115
+++ +++++ Y + G +D ARKVFDE+ E NV SWTS+I GY + + LF RM
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 116 PLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
N V+ V+ C AKLE + RN+ ++
Sbjct: 227 VRDEEVTPNSVTMVCVISAC------AKLEDLETGEKVYAFIRNSGIEV----------N 270
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
D++ +A++ Y+ + A LF+ N+ NAM Y R G A+ + NLM
Sbjct: 271 DLMV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329
Query: 233 QSRFMPNETTCTSILTSCEGMLENML----AHALAIRLGFEQETSLTYKCT-----CH-- 281
S P+ + S ++SC L N+L H +R GFE ++ CH
Sbjct: 330 DSGVRPDRISMLSAISSCS-QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388
Query: 282 --------------YVFWD-----WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
V W+ + +V++A FE + K++VSW +I
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGS 448
Query: 323 HGFQVFRLFARML-KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
+ +F M + G D +T + + S C H G ++ + + + + G +
Sbjct: 449 LFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN-GIQLDVRL 507
Query: 382 YSCLADILRRAGQVKEAMRVVSKM 405
+ L D+ R G + AM + + +
Sbjct: 508 GTTLVDMFSRCGDPESAMSIFNSL 531
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 137/347 (39%), Gaps = 52/347 (14%)
Query: 77 ARKVFD--EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------------PLKLKNV 122
A++VF+ E Y G + + SLI GY + +E LF RM P L
Sbjct: 86 AKEVFENSESY-GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSAC 144
Query: 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMIT 182
G +GLI K+ A++ FVQ N+++
Sbjct: 145 AKSRAKGNGIQIHGLIVKM------------------GYAKDLFVQ---------NSLVH 177
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNET 241
Y + G + A ++F+ M +RNV +W +MI YAR A+ L M + PN
Sbjct: 178 FYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237
Query: 242 TCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298
T ++++C E + +A G E + Y+ + +DV A+
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCN---AIDV--AKR 292
Query: 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358
F+ A ++ AM Y G + +F M+ SG +PD I+ + +S CS
Sbjct: 293 LFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRN 352
Query: 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
+ G+ + R GF+ + L D+ + + A R+ +M
Sbjct: 353 ILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 239 NETTCT----SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
N++ CT S L +C+ + E + H + G + + S K + G + ++
Sbjct: 27 NQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSC--ELGTRESLS 84
Query: 295 SARLAFERLEAKDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
A+ FE E+ + ++I Y++ G + LF RM+ SG PD+ TF LS C
Sbjct: 85 FAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSAC 144
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405
+ + G + L+ + G+ + L G++ A +V +M
Sbjct: 145 AKSRAKGNGIQIHGLIVK-MGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 218 bits (555), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 221/437 (50%), Gaps = 28/437 (6%)
Query: 77 ARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVV 123
ARK+FD + + LI Y+ Q E L++ + + +
Sbjct: 35 ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94
Query: 124 SWTTVVLGCAHNGLI-AKLEVISW--TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM 180
+ L H+ + E S+ TT+ T + AR F +M +D+ WNAM
Sbjct: 95 FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154
Query: 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM-PN 239
IT Y G+M A ELF+ MP++NV +W +I +++NG A+K+ M + + + PN
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214
Query: 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL---TYKCTCHYVFWDWGFQLDVNSA 296
T S+L +C + E + L G+ +E Y C + +DV A
Sbjct: 215 HITVVSVLPACANLGELEIGRRLE---GYARENGFFDNIYVCNATIEMYSKCGMIDV--A 269
Query: 297 RLAFERL-EAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355
+ FE L +++ SW +MI + + HG + LFA+ML+ G KPD +TFVG+L C H
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415
G+V KG++ F M + P+ EHY C+ D+L R G+++EA ++ M P + D VV
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTM-PMKPDAVVW 388
Query: 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475
G LLGAC HG+V +A+ E L +L+P++ G V+ +N++AA +WD ++RK M++
Sbjct: 389 GTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKE 448
Query: 476 -VKKVASFSQIEVKGKD 491
+ K A +S G D
Sbjct: 449 TMTKAAGYSYFVEVGVD 465
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 14 TKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR 73
++ F + D C ++IT + + L A +F M S+R++ +AMI GY + G
Sbjct: 106 SQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEM--SKRDVPVWNAMITGYQRRGD 163
Query: 74 VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVV 129
+ A ++FD + NV SWT++ISG+ + E ++F M K K+V ++ +V+
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCME-KDKSVKPNHITVVSVL 222
Query: 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE--YFVQMPNKDIVAWNAMITAYVDA 187
CA+ G +LE+ + ARE +F +I NA I Y
Sbjct: 223 PACANLG---ELEI-----------GRRLEGYARENGFF-----DNIYVCNATIEMYSKC 263
Query: 188 GNMAQASELF-NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
G + A LF L QRN+ +WN+MI A +G A+ L M + P+ T +
Sbjct: 264 GMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGL 323
Query: 247 LTSC 250
L +C
Sbjct: 324 LLAC 327
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 13 ATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG 72
A ++FDEMS+ D +MIT + R D+ A LF +MP ++N+ + + +I G+ + G
Sbjct: 136 ARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP--RKNVTSWTTVISGFSQNG 193
Query: 73 RVDEARKVF-----DEIYEGNVYSWTSLISGYFKARQVDEGRRL--FDRMPLKLKNVVSW 125
EA K+F D+ + N + S++ +++ GRRL + R N+
Sbjct: 194 NYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVC 253
Query: 126 TTVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQM----P 170
+ + G+I + + SW +M L + A F QM
Sbjct: 254 NATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGE 313
Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT-----WNAMIDRYARNGPEGAAM 225
D V + ++ A V G + + ELF M + + + + MID R G A
Sbjct: 314 KPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAY 373
Query: 226 KLLNLMFQSRFMPNETTCTSILTSC 250
L+ M P+ ++L +C
Sbjct: 374 DLIKTM---PMKPDAVVWGTLLGAC 395
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/501 (29%), Positives = 251/501 (50%), Gaps = 35/501 (6%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
G++ +A K+FD MS D V+C++++ + R L + + M S + NIV+ + ++
Sbjct: 165 GRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGIL 224
Query: 66 DGYVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
G+ ++G EA +F +I+ + + +S++ + ++ GR + +
Sbjct: 225 SGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV------ 278
Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMI 181
GL+ VIS G + ++ F Q + NA I
Sbjct: 279 -----------IKQGLLKDKCVISAMIDMYGKSGHVYGIIS--LFNQFEMMEAGVCNAYI 325
Query: 182 TAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
T G + +A E+F L ++ NV +W ++I A+NG + A++L M +
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385
Query: 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSA 296
PN T S+L +C + L H + GF L D + +N +
Sbjct: 386 PNHVTIPSMLPACGNIAA--LGHGRSTH-GFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
++ F + K++V W +++ +S HG +V +F ++++ KPD I+F +LS C
Sbjct: 443 QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV 502
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
GL ++G K F +MS YG KPR EHYSC+ ++L RAG+++EA ++ +M P E D V G
Sbjct: 503 GLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM-PFEPDSCVWG 561
Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR- 475
ALL +CRL +V +A+ E+L L+P + G YVL +N++AA+G W E +R KME
Sbjct: 562 ALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLG 621
Query: 476 VKKVASFSQIEVKGKDHTLLA 496
+KK S I+VK + +TLLA
Sbjct: 622 LKKNPGCSWIQVKNRVYTLLA 642
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/477 (21%), Positives = 178/477 (37%), Gaps = 111/477 (23%)
Query: 53 ESQRNIVAESAMIDGYVKAGRV---------DEARKVFDEIYEGNVYSWTSLISGYFKAR 103
++ I+ A DGY+ A + ++A V I + +YS++SLI KA+
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 104 QVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
+ +F RM + + + CA + I + +GL+ +A
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDA---- 151
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
FVQ +M Y+ G M A ++F+ M ++V T +A++ YAR G
Sbjct: 152 ----FVQ---------GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198
Query: 222 GAAMKLLN-------------------------------LMFQS----RFMPNETTCTSI 246
+++L+ +MFQ F P++ T +S+
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSV 258
Query: 247 LTSC-EGMLENM--LAHALAIRLGFEQETSLTYKCTCHY---VFWDWGFQLDVNSARLAF 300
L S + + NM L H I+ G L KC ++ G + S F
Sbjct: 259 LPSVGDSEMLNMGRLIHGYVIKQGL-----LKDKCVISAMIDMYGKSGHVYGIISLFNQF 313
Query: 301 ERLEAK--------------------------------DVVSWTAMILAYSNHGHGFQVF 328
E +EA +VVSWT++I + +G +
Sbjct: 314 EMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEAL 373
Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
LF M +G KP+ +T +L C + + GR T R + S L D+
Sbjct: 374 ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDM 432
Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI--ELQP 443
+ G++ + V + MP ++ V +L+ +HG + I E L+ L+P
Sbjct: 433 YAKCGRINLSQIVFNMMP--TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP 487
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)
Query: 5 GC--TGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQR 56
GC GK EA +LF EM +P+ V+ SM+ L + F
Sbjct: 362 GCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD 421
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR-M 115
N+ SA+ID Y K GR++ ++ VF+ + N+ W SL++G+ + E +F+ M
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481
Query: 116 PLKLK-NVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMT 159
+LK + +S+T+++ C GL K + ++ M L R
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541
Query: 160 KLAREYFVQMP-NKDIVAWNAMITA-----YVDAGNMAQASELFNLMPQRNVWTWNAMID 213
+ A + +MP D W A++ + VD +A A +LF+L P+ N T+ + +
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIA-AEKLFHLEPE-NPGTYVLLSN 599
Query: 214 RYARNG 219
YA G
Sbjct: 600 IYAAKG 605
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/554 (27%), Positives = 254/554 (45%), Gaps = 74/554 (13%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM---------- 51
S + GK+ +A KLFDEM D +S + FLRN + L + M
Sbjct: 98 SLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFDHAT 157
Query: 52 ----------PE----------------SQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
PE + I + +I Y K G R VFD +
Sbjct: 158 LTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMS 217
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLGCAHNGLIAKLEV 143
NV + T++ISG + ++G RLF M L N V++ + + C+ + I
Sbjct: 218 HRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRI----- 272
Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203
+E + L +Y ++ ++ +A++ Y G++ A +F +
Sbjct: 273 ---------VEGQQIHALLWKYGIE---SELCIESALMDMYSKCGSIEDAWTIFESTTEV 320
Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---- 259
+ + ++ A+NG E A++ M Q+ + +++L ++N L
Sbjct: 321 DEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGV--SFIDNSLGLGKQ 378
Query: 260 -HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAY 318
H+L I+ F T + Y D+ ++ F R+ ++ VSW +MI A+
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCG-----DLTDSQTVFRRMPKRNYVSWNSMIAAF 433
Query: 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378
+ HGHG +L+ M KP ++TF+ +L CSH GL++KGR+ N M +G +PR
Sbjct: 434 ARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPR 493
Query: 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438
EHY+C+ D+L RAG +KEA + +P + D + ALLGAC HGD + +Y E+L
Sbjct: 494 TEHYTCIIDMLGRAGLLKEAKSFIDSLPL-KPDCKIWQALLGACSFHGDTEVGEYAAEQL 552
Query: 439 IELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL--- 494
+ P SS A++L AN++++RG+W E A+ K+M+ V K S IE++ K H+
Sbjct: 553 FQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVE 612
Query: 495 --LAPMREMGYVVL 506
L P E Y VL
Sbjct: 613 DKLHPQAEAIYDVL 626
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 169/405 (41%), Gaps = 34/405 (8%)
Query: 55 QRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
RN +V ++++ Y K G++ +A K+FDE+ +V S + G+ + R+ + G L
Sbjct: 86 HRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLK 145
Query: 114 RMPLKLKNVVSWTTVVLGCA---HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
RM LG H L L V C L + LA +
Sbjct: 146 RM--------------LGSGGFDHATLTIVLSVCDTPEFC--LVTKMIHALA---ILSGY 186
Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
+K+I N +IT+Y G +F+ M RNV T A+I N ++L +L
Sbjct: 187 DKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSL 246
Query: 231 MFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287
M + PN T S L +C G ++E HAL + G E E L + ++
Sbjct: 247 MRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESE--LCIESALMDMYSKC 304
Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
G + A FE D VS T +++ + +G + + F RML++G + D
Sbjct: 305 G---SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVS 361
Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
VL + G++ +L+ + F + L ++ + G + ++ V +MP
Sbjct: 362 AVLGVSFIDNSLGLGKQLHSLVIKR-KFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP- 419
Query: 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452
+R++V +++ A HG A + E + L+ + LS
Sbjct: 420 -KRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLS 463
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/491 (28%), Positives = 236/491 (48%), Gaps = 27/491 (5%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAM 64
+G KEA L + + D V+ S+++ D + + + + + + +
Sbjct: 229 SGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
ID Y + GR+ + +KVFD +Y ++ SW S+I Y Q LF M L
Sbjct: 289 IDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC 348
Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
T + L ++++L I G L + +F++ DI NA++ Y
Sbjct: 349 LTLISLA----SILSQLGDIRACRSVQGF------TLRKGWFLE----DITIGNAVVVMY 394
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTC 243
G + A +FN +P +V +WN +I YA+NG A+++ N+M + N+ T
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454
Query: 244 TSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
S+L +C + + M H ++ G + + Y G + A F
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY-----GKCGRLEDALSLF 509
Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
++ + V W +I + HGHG + LF ML G KPD ITFV +LS CSH+GLV+
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569
Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
+G+ F +M YG P +HY C+ D+ RAGQ++ A++ + M + D + GALL
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL-QPDASIWGALLS 628
Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKV 479
ACR+HG+V + E L E++P G +VL +N++A+ G+W+ ++R + ++K
Sbjct: 629 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688
Query: 480 ASFSQIEVKGK 490
+S +EV K
Sbjct: 689 PGWSSMEVDNK 699
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 155/396 (39%), Gaps = 65/396 (16%)
Query: 33 TVFLRNHDLPKAEALFRAMPESQR--NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
T+F +L A+ L + S++ N+ + +++ Y G V AR FD I +VY
Sbjct: 59 TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118
Query: 91 SWTSLISGYFKARQVDEGRRLFD-------------RMPLKLKNVVSWTTVVLGCAHNGL 137
+W +ISGY +A E R F P LK + TV+ G + L
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLK---ACRTVIDGNKIHCL 175
Query: 138 IAKL----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQA 193
K +V ++ R AR F +MP +D+ +WNAMI+ Y +GN +A
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Query: 194 SELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE-- 251
L N + AM + T S+L++C
Sbjct: 236 LTLSNGL--------RAM---------------------------DSVTVVSLLSACTEA 260
Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
+ H+ +I+ G E E ++ K Y ++G D F+R+ +D++S
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYA--EFGRLRDCQK---VFDRMYVRDLIS 315
Query: 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370
W ++I AY + + LF M S +PD +T + + S S G + R
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375
Query: 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
R F + + + + G V A V + +P
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 233/471 (49%), Gaps = 66/471 (14%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
N SA++D Y +V R+VFD +++ + W ++I+GY + E LF M
Sbjct: 337 NSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396
Query: 117 LK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK------------- 160
L N + VV C +G ++ E I + GL+R+ +
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456
Query: 161 -LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
+A F +M ++D+V WN MIT YV + + A L + M ++R G
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN---------LERKVSKG 507
Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETS--- 273
++K PN T +IL SC + + HA AI+ + +
Sbjct: 508 ASRVSLK-----------PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 556
Query: 274 ----LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
+ KC C + +R F+++ K+V++W +I+AY HG+G +
Sbjct: 557 ALVDMYAKCGC------------LQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604
Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
L M+ G KP+E+TF+ V + CSH+G+V++G + F +M YG +P ++HY+C+ D+L
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664
Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGA---LLGACRLHGDVRMADYIGERLIELQPSSS 446
RAG++KEA ++++ MP RD GA LLGA R+H ++ + + + LI+L+P+ +
Sbjct: 665 GRAGRIKEAYQLMNMMP---RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 721
Query: 447 GAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
YVL AN++++ G WD+ +VR+ M E+ V+K S IE + H +A
Sbjct: 722 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVA 772
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 145/376 (38%), Gaps = 42/376 (11%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ + +++ Y K G KVFD I E N SW SLIS + + F M
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM- 190
Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL---ERNAMTKLAREYFVQMPNKD 173
L V ++ L +S T C+ L E M K Y ++ +
Sbjct: 191 --LDENVEPSSFTL-------------VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
N ++ Y G +A + L R++ TWN ++ +N A++ L M
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295
Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLT------YKCTCHYVF 284
P+E T +S+L +C E + HA A++ G E S C C V
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355
Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE 343
S R F+ + + + W AMI YS + H + LF M +S G +
Sbjct: 356 ----------SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405
Query: 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403
T GV+ C +G + + + G + L D+ R G++ AMR+
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464
Query: 404 KMPPHERDHVVLGALL 419
KM +RD V ++
Sbjct: 465 KM--EDRDLVTWNTMI 478
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 120/258 (46%), Gaps = 15/258 (5%)
Query: 11 KEATKLFDEMSQP-----DPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESA 63
KEA LF M + + + A ++ +R+ + EA+ F R+ ++
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
++D Y + G++D A ++F ++ + ++ +W ++I+GY + ++ L +M L+ V
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ-NLERKV 504
Query: 124 SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182
S + N + +++ C L A K Y ++ D+ +A++
Sbjct: 505 SKGASRVSLKPN----SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560
Query: 183 AYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242
Y G + + ++F+ +PQ+NV TWN +I Y +G A+ LL +M PNE T
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620
Query: 243 CTSILTSC--EGMLENML 258
S+ +C GM++ L
Sbjct: 621 FISVFAACSHSGMVDEGL 638
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/468 (20%), Positives = 192/468 (41%), Gaps = 64/468 (13%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G K+FD +S+ + VS S+I+ A FR M + N+ S +
Sbjct: 147 GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD--ENVEPSSFTLVS 204
Query: 68 YVKAGR---VDEARKVFDEIY-------EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
V A + E + +++ E N + +L++ Y K ++ + L
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS--F 262
Query: 118 KLKNVVSWTTVVLG-CAHNGLIAKLEVI----------------SWTTMCTGLERNAMTK 160
+++V+W TV+ C + L+ LE + S C+ LE K
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
Query: 161 LAREYFVQMPNKDIVAW--NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARN 218
Y ++ + D ++ +A++ Y + + +F+ M R + WNAMI Y++N
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Query: 219 GPEGAAMKLLNLMFQSR-FMPNETTCTSILTSC--EGMLENMLA-HALAIRLGFEQETSL 274
+ A+ L M +S + N TT ++ +C G A H ++ G +++ +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442
Query: 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334
+ T ++ G ++D+ A F ++E +D+V+W MI Y H L +M
Sbjct: 443 --QNTLMDMYSRLG-KIDI--AMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKM 497
Query: 335 L-----------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH-- 381
+ KP+ IT + +L C+ + KG++ AY K
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-----HAYAIKNNLATDV 552
Query: 382 --YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
S L D+ + G ++ + +V ++P +++ + ++ A +HG+
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGN 598
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 74/249 (29%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMIT--VFLRNHD------------------------- 40
GK+ A ++F +M D V+ +MIT VF +H+
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 41 LPKAEALFRAMPES---------------------QRNIVAESAMIDGYVKAGRVDEARK 79
P + L +P ++ SA++D Y K G + +RK
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 80 VFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGL 137
VFD+I + NV +W +I Y E L M ++ N V++ +V C+H+G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 138 IAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVD----AGNMAQA 193
+ + GL R ++V P+ + + VD AG + +A
Sbjct: 634 VDE-----------GL---------RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673
Query: 194 SELFNLMPQ 202
+L N+MP+
Sbjct: 674 YQLMNMMPR 682
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/448 (30%), Positives = 238/448 (53%), Gaps = 50/448 (11%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
+ +I+ YVK +++A ++FD++ + NV SWT++IS Y K + ++ + + L L+
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKI---HQKALELLVLMLRD 156
Query: 121 ----NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
NV ++++V+ C NG+ + + ++ + GLE D+
Sbjct: 157 NVRPNVYTYSSVLRSC--NGM-SDVRMLHCGIIKEGLE-----------------SDVFV 196
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
+A+I + G A +F+ M + WN++I +A+N A++L M ++ F
Sbjct: 197 RSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGF 256
Query: 237 MPNETTCTSILTSCEGM--LE-NMLAHALAIRLGFEQETSLTYK-----CTCHYVFWDWG 288
+ + T TS+L +C G+ LE M AH ++ ++Q+ L C C
Sbjct: 257 IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCG------- 307
Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
+ A F +++ +DV++W+ MI + +G+ + +LF RM SGTKP+ IT VG
Sbjct: 308 ---SLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364
Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
VL CSHAGL+E G F M + YG P EHY C+ D+L +AG++ +A++++++M
Sbjct: 365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC- 423
Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468
E D V LLGACR+ ++ +A+Y +++I L P +G Y L +N++A +WD ++
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483
Query: 469 RKKM-ERRVKKVASFSQIEVKGKDHTLL 495
R +M +R +KK S IEV + H +
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFI 511
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 59/286 (20%)
Query: 10 VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------------- 54
+ +A +LFD+M Q + +S +MI+ + + KA L M
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171
Query: 55 -------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSL 95
+ ++ SA+ID + K G ++A VFDE+ G+ W S+
Sbjct: 172 CNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231
Query: 96 ISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI-SWTTMCTGLE 154
I G+ + + D LF RM G IA+ + S CTGL
Sbjct: 232 IGGFAQNSRSDVALELFKRMK-----------------RAGFIAEQATLTSVLRACTGL- 273
Query: 155 RNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
A+ +L + V + ++D++ NA++ Y G++ A +FN M +R+V TW+ MI
Sbjct: 274 --ALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331
Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN 256
A+NG A+KL M S PN T +L +C G+LE+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 58/269 (21%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--------- 54
F G+ ++A +FDEM D + S+I F +N A LF+ M +
Sbjct: 204 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 263
Query: 55 --------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
++++ +A++D Y K G +++A +VF+++ E +
Sbjct: 264 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD 323
Query: 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISW 146
V +W+++ISG + E +LF+RM N ++ V+ C+H GL+ W
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED----GW 379
Query: 147 TTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP-QRNV 205
+M KL Y + P ++ + MI AG + A +L N M + +
Sbjct: 380 YYF------RSMKKL---YGID-PVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEPDA 427
Query: 206 WTWNAMID--RYARNG--PEGAAMKLLNL 230
TW ++ R RN E AA K++ L
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIAL 456
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 157/536 (29%), Positives = 247/536 (46%), Gaps = 76/536 (14%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRN--------------------------HDLP 42
+V EA K+FD M + D VS +++ + +N LP
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244
Query: 43 KAEAL-------------FRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
AL R+ +S NI +A++D Y K G ++ AR++FD + E NV
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNI--STALVDMYAKCGSLETARQLFDGMLERNV 302
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV-VLG----CAHNGLIAKLEVI 144
SW S+I Y + E +F +M L V T V V+G CA G + + I
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKM---LDEGVKPTDVSVMGALHACADLGDLERGRFI 359
Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
++ GL+RN + N++I+ Y + A+ +F + R
Sbjct: 360 HKLSVELGLDRN-----------------VSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402
Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HA 261
+ +WNAMI +A+NG A+ + M P+ T S++T+ + A H
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462
Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
+ +R ++ +T Y + ARL F+ + + V +W AMI Y H
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCG-----AIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
G G LF M K KP+ +TF+ V+S CSH+GLVE G K F +M Y + +H
Sbjct: 518 GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577
Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441
Y + D+L RAG++ EA + +MP + V GA+LGAC++H +V A+ ERL EL
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN-VYGAMLGACQIHKNVNFAEKAAERLFEL 636
Query: 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLLA 496
P G +VL AN++ A W++ QVR M R+ ++K S +E+K + H+ +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 38/379 (10%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ A + + + Y K +V+EARKVFD + E ++ SW ++++GY + RM
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY--------SQNGMARMA 220
Query: 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
L++ + C N + + ++S + L ++ K Y ++ +V
Sbjct: 221 LEMVKSM--------CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272
Query: 177 WN-AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
+ A++ Y G++ A +LF+ M +RNV +WN+MID Y +N AM + M
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332
Query: 236 FMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETS-----LTYKCTCHYVFWDW 287
P + + L +C G LE H L++ LG ++ S ++ C C
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK------ 386
Query: 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347
+V++A F +L+++ +VSW AMIL ++ +G F++M KPD T+V
Sbjct: 387 ----EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442
Query: 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPP 407
V++ + + + ++ R+ + L D+ + G + A + M
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS- 500
Query: 408 HERDHVVLGALLGACRLHG 426
ER A++ HG
Sbjct: 501 -ERHVTTWNAMIDGYGTHG 518
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 148/307 (48%), Gaps = 25/307 (8%)
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-L 119
++ ++ + + G VDEA +VF+ I + +++ G+ K +D+ + F RM +
Sbjct: 72 QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131
Query: 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
+ VV T +L G A+L V G E + + L + F + D+ A
Sbjct: 132 EPVVYNFTYLLKVC--GDEAELRV--------GKEIHGL--LVKSGF----SLDLFAMTG 175
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
+ Y + +A ++F+ MP+R++ +WN ++ Y++NG A++++ M + P+
Sbjct: 176 LENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPS 235
Query: 240 ETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
T S+L + + + H A+R GF+ +++ Y + +A
Sbjct: 236 FITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-----SLETA 290
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
R F+ + ++VVSW +MI AY + + + +F +ML G KP +++ +G L C+
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Query: 357 GLVEKGR 363
G +E+GR
Sbjct: 351 GDLERGR 357
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 28/295 (9%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAM--I 65
G ++ A +LFD M + + VS SMI +++N + +A +F+ M + S M +
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344
Query: 66 DGYVKAGRVDEAR---KVFDEI-YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
G ++ R K+ E+ + NV SLIS Y K ++VD +F + L+ +
Sbjct: 345 HACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQSRT 402
Query: 122 VVSWTTVVLGCAHNG--------------LIAKLEVISWTTMCTGLERNAMTKLAR-EYF 166
+VSW ++LG A NG K + ++ ++ T + ++T A+ +
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462
Query: 167 VQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223
V M +K++ A++ Y G + A +F++M +R+V TWNAMID Y +G A
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 224 AMKLLNLMFQSRFMPNETTCTSILTSC--EGMLENMLAHALAIRLGFEQETSLTY 276
A++L M + PN T S++++C G++E L ++ + E S+ +
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDH 577
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 142/355 (40%), Gaps = 42/355 (11%)
Query: 161 LAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGP 220
L +E+F Q +++ + G++ +A+ +F + + ++ M+ +A+
Sbjct: 65 LYQEHFFQ---------TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSD 115
Query: 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQET----- 272
A++ M P T +L C E + H L ++ GF +
Sbjct: 116 LDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG 175
Query: 273 --SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
++ KC VN AR F+R+ +D+VSW ++ YS +G +
Sbjct: 176 LENMYAKCR------------QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223
Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
M + KP IT V VL S L+ G++ R+ GF + L D+
Sbjct: 224 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS-GFDSLVNISTALVDMYA 282
Query: 391 RAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450
+ G ++ A ++ M ER+ V +++ A + + + A I +++++ + V
Sbjct: 283 KCGSLETARQLFDGML--ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 451 LSANVHAA-------RGEWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLAPM 498
+ A +HA RG + V ++R V V S + K K+ A M
Sbjct: 341 MGA-LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 28/226 (12%)
Query: 4 FGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRN 57
F G+ +A F +M +PD + S+IT A+ + + S +N
Sbjct: 413 FAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKN 472
Query: 58 IVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117
+ +A++D Y K G + AR +FD + E +V +W ++I GY LF+ M
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK 532
Query: 118 KL--KNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMTK 160
N V++ +V+ C+H+GL+ +L + + M L R
Sbjct: 533 GTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLN 592
Query: 161 LAREYFVQMPNKDIV-AWNAMITAYVDAGNM----AQASELFNLMP 201
A ++ +QMP K V + AM+ A N+ A LF L P
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 638
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 171/644 (26%), Positives = 273/644 (42%), Gaps = 146/644 (22%)
Query: 3 QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-------- 54
+FG G A LFDEM + D VS +MI+ + L A LF M S
Sbjct: 47 KFGFLGY---ANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYS 103
Query: 55 -----------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85
+ N+ S+++D Y K RV++A + F EI
Sbjct: 104 FSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEIS 163
Query: 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK------------------------LKN 121
E N SW +LI+G+ + R + L M +K L
Sbjct: 164 EPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLK 223
Query: 122 VVSWTTVVLGCAH-------------------------NGLIAKLEVISWTTMCTGLERN 156
V + LG H +GL ++ISW +M G ++
Sbjct: 224 QVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKH 283
Query: 157 AMTKLAREYFVQMP----NKDIVAW----------------------------------- 177
+ + A E F+QM DI +
Sbjct: 284 ELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSAT 343
Query: 178 NAMITAYVD--AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
NA+I+ Y+ G M A LF + +++ +WN++I +A+ G A+K + + S
Sbjct: 344 NALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSE 403
Query: 236 FMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
++ +++L SC + L HALA + GF + Y G
Sbjct: 404 IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYS--KCGI--- 458
Query: 293 VNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
+ SAR F+++ +K V+W AMIL Y+ HG G LF++M K D +TF +L+
Sbjct: 459 IESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILT 518
Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
CSH GL+++G + NLM Y +PR EHY+ D+L RAG V +A ++ MP + D
Sbjct: 519 ACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNP-D 577
Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
+VL LG CR G++ MA + L+E++P YV +++++ +W+E A V+K
Sbjct: 578 PMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKM 637
Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
M ER VKKV +S IE++ + A P+ + Y+++K++
Sbjct: 638 MKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDL 681
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 169/443 (38%), Gaps = 95/443 (21%)
Query: 54 SQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFD 113
S +I + ++D Y+K G + A +FDE+ + + SW ++ISGY ++++ LF
Sbjct: 31 SISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT 90
Query: 114 RMPLK------------LKNVVSWTTVVLGCAHNGLIAK----LEVISWTTMCTGLERNA 157
M LK + S LG +GL+ K V +++ +
Sbjct: 91 CMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCE 150
Query: 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP---------------- 201
+ A E F ++ + V+WNA+I +V ++ A L LM
Sbjct: 151 RVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLL 210
Query: 202 ------------------------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR-- 235
Q + NAMI YA G A ++ + + S+
Sbjct: 211 TLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDL 270
Query: 236 ---------FMPNET---------------------TCTSILTSCEGMLENMLA---HAL 262
F +E T T +L++C G + H +
Sbjct: 271 ISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGM 330
Query: 263 AIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
I+ G EQ TS T Y+ + G D S FE L++KD++SW ++I ++ G
Sbjct: 331 VIKKGLEQVTSATNALISMYIQFPTGTMEDALS---LFESLKSKDLISWNSIITGFAQKG 387
Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
+ F+ + S K D+ F +L CS ++ G++ L +++ GF
Sbjct: 388 LSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKS-GFVSNEFVI 446
Query: 383 SCLADILRRAGQVKEAMRVVSKM 405
S L + + G ++ A + ++
Sbjct: 447 SSLIVMYSKCGIIESARKCFQQI 469
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
L H AI+ G + ++ + Y+ +GF + A + F+ + +D VSW MI
Sbjct: 21 LTHCYAIKCGSISDIYVSNRILDSYI--KFGF---LGYANMLFDEMPKRDSVSWNTMISG 75
Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
Y++ G + LF M +SG+ D +F +L + + G + L+ + G++
Sbjct: 76 YTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKG-GYEC 134
Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMA 431
S L D+ + +V++A ++ E + V AL+ D++ A
Sbjct: 135 NVYVGSSLVDMYAKCERVEDAFEAFKEIS--EPNSVSWNALIAGFVQVRDIKTA 186
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 231/470 (49%), Gaps = 45/470 (9%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM- 115
++ + MI Y K ++ ARKVFDE+ E +V SW S+ISGY ++ ++ ++++ M
Sbjct: 166 DVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAML 225
Query: 116 ---PLKLKNVVSWTTVVLGCAHNG-LIAKLEV-------------------ISWTTMCTG 152
K N V+ +V C + LI LEV I + C
Sbjct: 226 ACSDFK-PNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGS 284
Query: 153 LERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMI 212
L+ AR F +M KD V + A+I+ Y+ G + +A LF+ M + TWNAMI
Sbjct: 285 LD------YARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMI 338
Query: 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---TSCEGMLENMLAHALAIRLGFE 269
+N + M + PN T +S+L T + HA AIR G +
Sbjct: 339 SGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGAD 398
Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
+T +Y GF L A+ F+ + + +++WTA+I AY+ HG
Sbjct: 399 NNIYVTTSIIDNYA--KLGFLL---GAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453
Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
LF +M GTKPD++T VLS +H+G + + F+ M Y +P EHY+C+ +L
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVL 513
Query: 390 RRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447
RAG++ +AM +SKMP P + V GALL + GD+ +A + +RL E++P ++G
Sbjct: 514 SRAGKLSDAMEFISKMPIDPIAK---VWGALLNGASVLGDLEIARFACDRLFEMEPENTG 570
Query: 448 AYVLSANVHAARGEWDEFAQVRKKMER-RVKKVASFSQIEVKGKDHTLLA 496
Y + AN++ G W+E VR KM+R +KK+ S IE + + +A
Sbjct: 571 NYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIA 620
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 175/412 (42%), Gaps = 71/412 (17%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
S +I Y + R +A VFDEI N +S+ +L+ Y +R++ FD L L
Sbjct: 61 SKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAY-TSREM-----YFDAFSLFL-- 112
Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMC---TGLERNAMTKLAREY--FVQMP--NKDI 174
SW + ++ A+ + IS + + +G + + LAR+ FV + D+
Sbjct: 113 --SW---IGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSDV 167
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ- 233
N MIT Y N+ A ++F+ M +R+V +WN+MI Y+++G K+ M
Sbjct: 168 FVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLAC 227
Query: 234 SRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
S F PN T S+ +C ++ + H I + + SL C+ V +
Sbjct: 228 SDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSL-----CNAVIGFYAKC 282
Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHG---------------------------- 322
++ AR F+ + KD V++ A+I Y HG
Sbjct: 283 GSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLM 342
Query: 323 ---HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379
H +V F M++ G++P+ +T +L +++ ++ G++ A+ + A
Sbjct: 343 QNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEI-----HAFAIRNGA 397
Query: 380 EH----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
++ + + D + G + A RV +R + A++ A +HGD
Sbjct: 398 DNNIYVTTSIIDNYAKLGFLLGAQRVFDNCK--DRSLIAWTAIITAYAVHGD 447
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 58/297 (19%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM-------PES------- 54
++ A K+FDEMS+ D VS SMI+ + ++ + +++AM P
Sbjct: 182 NIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVF 241
Query: 55 ------------------------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY 90
Q ++ +A+I Y K G +D AR +FDE+ E +
Sbjct: 242 QACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSV 301
Query: 91 SWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG-----------LI- 138
++ ++ISGY V E LF M + + +W ++ G N +I
Sbjct: 302 TYGAIISGYMAHGLVKEAMALFSEM--ESIGLSTWNAMISGLMQNNHHEEVINSFREMIR 359
Query: 139 --AKLEVISWTTMCTGLERNAMTKLAREYFV----QMPNKDIVAWNAMITAYVDAGNMAQ 192
++ ++ +++ L ++ K +E + +I ++I Y G +
Sbjct: 360 CGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLG 419
Query: 193 ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
A +F+ R++ W A+I YA +G +A L + M P++ T T++L++
Sbjct: 420 AQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSA 476
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 29/237 (12%)
Query: 11 KEATKLFDEM----SQPDPVSCASMITVFLRNHDLPKAEAL--FRAMPESQRNIVAESAM 64
+E F EM S+P+ V+ +S++ + +L + + F + NI +++
Sbjct: 348 EEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSI 407
Query: 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP-LKLK-NV 122
ID Y K G + A++VFD + ++ +WT++I+ Y D LFD+M L K +
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDD 467
Query: 123 VSWTTVVLGCAHNG-----------LIAKLE----VISWTTMCTGLERNAMTKLAREYFV 167
V+ T V+ AH+G ++ K + V + M + L R A E+
Sbjct: 468 VTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFIS 527
Query: 168 QMPNKDIV-AWNAMITAYVDAGNMAQA----SELFNLMPQRNVWTWNAMIDRYARNG 219
+MP I W A++ G++ A LF + P+ N + M + Y + G
Sbjct: 528 KMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPE-NTGNYTIMANLYTQAG 583
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,091,185
Number of Sequences: 539616
Number of extensions: 7208052
Number of successful extensions: 23920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 16221
Number of HSP's gapped (non-prelim): 2401
length of query: 510
length of database: 191,569,459
effective HSP length: 122
effective length of query: 388
effective length of database: 125,736,307
effective search space: 48785687116
effective search space used: 48785687116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)