Query 046354
Match_columns 510
No_of_seqs 494 out of 2619
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 11:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.8E-73 1.9E-77 584.8 48.9 498 1-508 229-759 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.6E-70 5.6E-75 553.4 46.2 480 2-508 95-596 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-63 4.1E-68 515.3 45.9 468 1-481 128-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.5E-60 2.1E-64 478.7 44.7 467 3-480 379-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.2E-55 6.9E-60 445.7 45.5 445 22-473 367-874 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 9.5E-51 2.1E-55 411.0 35.7 408 2-442 131-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-30 7.7E-35 273.2 42.2 460 3-473 406-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-29 6.5E-34 266.2 46.1 461 4-476 339-867 (899)
9 PRK11447 cellulose synthase su 99.9 1.7E-21 3.7E-26 207.6 43.7 462 4-474 72-699 (1157)
10 PRK11447 cellulose synthase su 99.9 1.3E-21 2.8E-26 208.5 41.3 252 177-473 464-738 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.9E-22 4.2E-27 183.5 27.4 412 6-480 60-490 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-20 3.4E-25 188.2 37.3 403 27-473 129-569 (615)
13 PRK09782 bacteriophage N4 rece 99.9 1.7E-19 3.7E-24 184.0 44.2 459 6-473 56-704 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.8E-21 3.9E-26 177.2 24.2 379 24-465 115-509 (966)
15 PRK09782 bacteriophage N4 rece 99.9 3.5E-19 7.7E-24 181.8 42.2 453 4-473 160-738 (987)
16 PRK10049 pgaA outer membrane p 99.9 5.2E-19 1.1E-23 180.5 40.1 399 24-480 14-461 (765)
17 PRK11788 tetratricopeptide rep 99.9 5.5E-20 1.2E-24 175.2 26.6 292 150-482 42-355 (389)
18 PRK15174 Vi polysaccharide exp 99.9 1E-18 2.2E-23 174.5 34.0 254 152-446 119-386 (656)
19 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.5E-23 173.1 32.7 277 156-474 89-380 (656)
20 PRK10049 pgaA outer membrane p 99.9 5.5E-18 1.2E-22 173.0 36.8 385 3-448 24-463 (765)
21 PRK11788 tetratricopeptide rep 99.9 9.1E-19 2E-23 166.9 29.1 230 175-440 108-346 (389)
22 PRK14574 hmsH outer membrane p 99.8 3.3E-17 7.3E-22 164.1 40.1 425 28-480 38-518 (822)
23 TIGR00990 3a0801s09 mitochondr 99.8 9.2E-17 2E-21 161.2 33.2 373 60-473 129-535 (615)
24 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.6E-20 151.3 38.8 415 4-448 44-520 (822)
25 KOG2002 TPR-containing nuclear 99.8 1.6E-15 3.5E-20 146.0 31.9 416 57-481 269-751 (1018)
26 KOG2002 TPR-containing nuclear 99.8 2.7E-15 5.9E-20 144.4 33.0 441 23-473 268-796 (1018)
27 KOG2003 TPR repeat-containing 99.8 8.2E-16 1.8E-20 135.8 24.5 417 3-461 246-709 (840)
28 KOG1915 Cell cycle control pro 99.7 1.5E-13 3.3E-18 122.3 35.6 468 7-478 86-628 (677)
29 KOG0547 Translocase of outer m 99.7 4.5E-14 9.8E-19 126.1 28.2 181 288-473 371-564 (606)
30 KOG2076 RNA polymerase III tra 99.7 1.3E-13 2.9E-18 132.1 28.0 325 94-473 144-510 (895)
31 KOG0495 HAT repeat protein [RN 99.6 1E-11 2.2E-16 115.2 37.1 441 9-488 391-892 (913)
32 KOG1915 Cell cycle control pro 99.6 3.8E-12 8.3E-17 113.5 32.8 398 57-484 72-510 (677)
33 PF13429 TPR_15: Tetratricopep 99.6 4.5E-16 9.7E-21 140.5 7.8 253 179-473 13-275 (280)
34 PRK10747 putative protoheme IX 99.6 8.6E-13 1.9E-17 124.6 29.2 252 153-441 128-390 (398)
35 KOG2076 RNA polymerase III tra 99.6 1.8E-12 3.9E-17 124.5 30.6 113 6-118 151-270 (895)
36 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.7E-18 128.3 21.0 274 189-473 334-618 (638)
37 KOG0495 HAT repeat protein [RN 99.6 3E-11 6.5E-16 112.1 35.0 368 70-473 388-780 (913)
38 PRK10747 putative protoheme IX 99.6 9.9E-13 2.2E-17 124.2 25.4 273 156-473 97-388 (398)
39 KOG1173 Anaphase-promoting com 99.6 1.1E-11 2.3E-16 113.3 30.5 439 24-473 15-516 (611)
40 KOG4422 Uncharacterized conser 99.6 1.5E-11 3.3E-16 108.4 29.3 216 16-235 198-463 (625)
41 KOG2003 TPR repeat-containing 99.6 3.3E-12 7.1E-17 113.4 24.3 188 288-478 501-692 (840)
42 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 118.0 29.5 286 100-439 95-397 (409)
43 KOG1126 DNA-binding cell divis 99.5 6.2E-13 1.3E-17 123.7 19.4 281 104-447 334-626 (638)
44 PF13429 TPR_15: Tetratricopep 99.5 9.4E-15 2E-19 131.8 7.3 233 210-481 13-249 (280)
45 KOG1155 Anaphase-promoting com 99.5 6.9E-12 1.5E-16 111.7 23.9 289 172-473 162-493 (559)
46 KOG2047 mRNA splicing factor [ 99.5 8.8E-11 1.9E-15 108.8 31.7 447 4-461 112-709 (835)
47 COG3071 HemY Uncharacterized e 99.5 4.4E-11 9.5E-16 105.0 27.8 282 102-439 97-388 (400)
48 COG2956 Predicted N-acetylgluc 99.5 1.6E-11 3.6E-16 104.4 24.1 294 101-482 47-355 (389)
49 KOG4422 Uncharacterized conser 99.5 6.7E-11 1.5E-15 104.5 28.7 322 142-473 206-588 (625)
50 KOG1155 Anaphase-promoting com 99.5 7.1E-11 1.5E-15 105.4 28.5 285 180-473 233-534 (559)
51 KOG2376 Signal recognition par 99.5 7.8E-10 1.7E-14 101.9 34.3 433 2-470 20-515 (652)
52 TIGR00540 hemY_coli hemY prote 99.5 2.1E-11 4.6E-16 115.9 25.3 278 154-473 95-397 (409)
53 KOG2047 mRNA splicing factor [ 99.5 2.2E-09 4.7E-14 99.9 36.5 429 25-477 102-617 (835)
54 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 3.8E-16 107.8 18.3 196 272-473 31-230 (234)
55 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 100.4 29.2 276 142-456 243-533 (611)
56 KOG0547 Translocase of outer m 99.4 3.4E-10 7.3E-15 101.8 23.1 152 318-473 336-489 (606)
57 KOG1129 TPR repeat-containing 99.4 3.8E-10 8.3E-15 96.3 21.8 224 209-474 227-457 (478)
58 PF13041 PPR_2: PPR repeat fam 99.3 3.5E-12 7.6E-17 80.7 6.0 50 306-355 1-50 (50)
59 COG2956 Predicted N-acetylgluc 99.3 1.8E-09 3.9E-14 92.2 23.6 280 72-439 49-345 (389)
60 COG3071 HemY Uncharacterized e 99.3 5.2E-09 1.1E-13 92.2 27.2 270 38-371 97-389 (400)
61 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.4E-13 89.4 29.1 269 171-452 229-511 (564)
62 KOG4162 Predicted calmodulin-b 99.3 1.3E-08 2.8E-13 97.0 30.2 409 57-484 322-792 (799)
63 KOG1840 Kinesin light chain [C 99.3 3.7E-10 8.1E-15 106.4 19.9 238 175-473 200-477 (508)
64 PRK12370 invasion protein regu 99.3 7.1E-10 1.5E-14 109.6 22.4 258 171-473 253-533 (553)
65 KOG1156 N-terminal acetyltrans 99.3 5.8E-08 1.3E-12 90.9 31.8 395 37-473 19-466 (700)
66 KOG1174 Anaphase-promoting com 99.2 7.7E-08 1.7E-12 85.2 30.2 277 185-473 207-498 (564)
67 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.3E-16 76.8 6.4 49 203-251 1-49 (50)
68 KOG4318 Bicoid mRNA stability 99.2 1.3E-08 2.9E-13 98.2 27.4 247 22-282 22-281 (1088)
69 KOG3785 Uncharacterized conser 99.2 1.4E-07 3.1E-12 81.9 30.7 439 32-490 29-503 (557)
70 TIGR02521 type_IV_pilW type IV 99.2 1.6E-09 3.4E-14 95.3 19.2 199 205-443 31-234 (234)
71 KOG1129 TPR repeat-containing 99.2 3.7E-10 7.9E-15 96.4 13.9 231 178-448 227-465 (478)
72 KOG1156 N-terminal acetyltrans 99.2 6.5E-08 1.4E-12 90.5 29.2 425 4-473 51-509 (700)
73 COG3063 PilF Tfp pilus assembl 99.2 5.7E-10 1.2E-14 90.8 13.7 160 311-474 38-201 (250)
74 PRK12370 invasion protein regu 99.2 4.6E-09 1E-13 103.9 22.8 241 203-478 254-505 (553)
75 KOG3785 Uncharacterized conser 99.2 2.5E-08 5.4E-13 86.4 23.7 380 6-445 34-494 (557)
76 PF12569 NARP1: NMDA receptor- 99.2 7.7E-08 1.7E-12 92.1 29.8 255 176-471 196-516 (517)
77 KOG4318 Bicoid mRNA stability 99.2 2.3E-08 5E-13 96.6 25.7 85 306-394 202-286 (1088)
78 KOG0548 Molecular co-chaperone 99.2 3.1E-08 6.7E-13 90.7 24.8 426 4-470 12-484 (539)
79 PF04733 Coatomer_E: Coatomer 99.2 3.7E-09 8E-14 94.2 18.4 251 153-446 11-270 (290)
80 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3.1E-13 95.9 22.1 242 133-439 189-477 (508)
81 KOG4162 Predicted calmodulin-b 99.1 1.1E-07 2.4E-12 90.9 27.5 407 23-448 321-790 (799)
82 PRK11189 lipoprotein NlpI; Pro 99.1 5.4E-08 1.2E-12 88.1 23.8 206 176-457 66-282 (296)
83 PF12569 NARP1: NMDA receptor- 99.1 8.5E-08 1.8E-12 91.8 25.1 163 309-474 144-333 (517)
84 COG3063 PilF Tfp pilus assembl 99.1 1.1E-08 2.3E-13 83.5 16.1 201 276-482 39-243 (250)
85 KOG3617 WD40 and TPR repeat-co 99.1 2.2E-06 4.7E-11 82.7 33.5 215 2-232 736-994 (1416)
86 PRK11189 lipoprotein NlpI; Pro 99.0 1.3E-08 2.8E-13 92.2 17.1 186 275-474 67-264 (296)
87 KOG1125 TPR repeat-containing 99.0 1.1E-08 2.5E-13 94.3 14.7 221 213-473 293-525 (579)
88 KOG3616 Selective LIM binding 99.0 2.4E-06 5.1E-11 81.5 29.9 137 275-436 768-906 (1636)
89 KOG2376 Signal recognition par 99.0 4.3E-06 9.3E-11 77.9 30.0 216 95-343 18-258 (652)
90 KOG0624 dsRNA-activated protei 99.0 4.3E-06 9.3E-11 72.6 27.9 322 25-411 38-373 (504)
91 KOG0548 Molecular co-chaperone 98.9 1.1E-07 2.5E-12 87.1 18.9 184 288-473 235-453 (539)
92 KOG3616 Selective LIM binding 98.9 2.2E-06 4.9E-11 81.6 27.3 82 31-117 738-819 (1636)
93 PF04733 Coatomer_E: Coatomer 98.9 2.2E-08 4.8E-13 89.2 13.6 248 181-480 8-270 (290)
94 PRK10370 formate-dependent nit 98.9 7E-08 1.5E-12 81.2 16.0 150 315-478 23-176 (198)
95 TIGR03302 OM_YfiO outer membra 98.9 1E-07 2.2E-12 83.8 16.6 164 307-474 32-231 (235)
96 KOG3617 WD40 and TPR repeat-co 98.9 2E-05 4.4E-10 76.3 32.0 365 23-472 724-1171(1416)
97 KOG4340 Uncharacterized conser 98.9 7E-06 1.5E-10 69.9 25.2 403 28-473 13-441 (459)
98 KOG0624 dsRNA-activated protei 98.9 2.7E-06 6E-11 73.8 23.2 305 142-473 37-368 (504)
99 PRK15359 type III secretion sy 98.8 3E-08 6.6E-13 78.9 10.2 90 384-473 29-119 (144)
100 PRK04841 transcriptional regul 98.8 1.7E-05 3.7E-10 84.7 34.1 150 68-233 384-559 (903)
101 KOG4340 Uncharacterized conser 98.8 8.1E-07 1.8E-11 75.5 18.8 184 148-340 15-210 (459)
102 KOG0985 Vesicle coat protein c 98.8 0.00011 2.3E-09 73.1 34.0 238 203-472 982-1246(1666)
103 PRK15359 type III secretion sy 98.8 7.7E-08 1.7E-12 76.5 10.4 124 329-458 14-138 (144)
104 KOG1914 mRNA cleavage and poly 98.8 4.7E-05 1E-09 70.5 29.0 74 23-97 18-94 (656)
105 KOG1127 TPR repeat-containing 98.8 6.5E-06 1.4E-10 81.3 25.0 447 10-473 474-994 (1238)
106 cd05804 StaR_like StaR_like; a 98.8 8.4E-06 1.8E-10 76.8 25.8 186 288-473 125-334 (355)
107 KOG1128 Uncharacterized conser 98.7 2.6E-07 5.6E-12 87.9 14.6 210 209-473 402-614 (777)
108 cd05804 StaR_like StaR_like; a 98.7 1.9E-05 4.2E-10 74.3 25.3 263 174-473 6-291 (355)
109 KOG1127 TPR repeat-containing 98.7 2.2E-05 4.7E-10 77.7 25.1 439 4-455 572-1118(1238)
110 COG5010 TadD Flp pilus assembl 98.7 9.6E-07 2.1E-11 74.0 13.6 155 313-470 71-226 (257)
111 KOG3081 Vesicle coat complex C 98.6 2.5E-05 5.4E-10 65.7 21.0 151 288-445 119-275 (299)
112 PRK15363 pathogenicity island 98.6 2.9E-07 6.3E-12 71.8 8.9 98 379-476 35-133 (157)
113 PLN02789 farnesyltranstransfer 98.6 4.1E-06 8.9E-11 75.8 17.3 226 207-473 39-300 (320)
114 COG5010 TadD Flp pilus assembl 98.6 2.2E-06 4.7E-11 72.0 13.9 133 339-473 62-195 (257)
115 KOG1128 Uncharacterized conser 98.6 1.9E-06 4E-11 82.3 14.9 198 267-485 393-591 (777)
116 COG4783 Putative Zn-dependent 98.6 1.4E-05 3.1E-10 73.1 19.7 113 355-469 318-431 (484)
117 TIGR02552 LcrH_SycD type III s 98.6 6.8E-07 1.5E-11 70.8 10.3 94 380-473 18-112 (135)
118 KOG1070 rRNA processing protei 98.6 2.3E-06 4.9E-11 87.2 15.9 196 269-473 1455-1661(1710)
119 PRK15179 Vi polysaccharide bio 98.6 2.5E-06 5.4E-11 85.2 16.0 132 339-473 82-215 (694)
120 KOG0985 Vesicle coat protein c 98.5 0.00033 7.1E-09 69.9 29.5 275 157-466 1089-1374(1666)
121 PRK10370 formate-dependent nit 98.5 1.6E-06 3.6E-11 73.0 12.6 129 321-452 52-184 (198)
122 PRK04841 transcriptional regul 98.5 0.0001 2.2E-09 78.8 29.3 358 4-444 351-763 (903)
123 PF12854 PPR_1: PPR repeat 98.5 6.4E-08 1.4E-12 54.7 2.7 32 374-405 2-33 (34)
124 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.3E-12 53.8 3.5 33 337-369 1-33 (34)
125 TIGR03302 OM_YfiO outer membra 98.5 6.8E-06 1.5E-10 72.2 16.3 177 23-234 31-232 (235)
126 KOG1070 rRNA processing protei 98.5 2.2E-05 4.9E-10 80.3 21.2 174 291-468 1511-1693(1710)
127 KOG3060 Uncharacterized conser 98.5 7E-06 1.5E-10 68.4 14.1 182 288-473 23-218 (289)
128 PRK14720 transcript cleavage f 98.5 1.7E-05 3.7E-10 80.2 19.6 215 171-457 28-268 (906)
129 PF07079 DUF1347: Protein of u 98.5 0.00076 1.6E-08 61.5 27.5 128 4-133 16-178 (549)
130 KOG1125 TPR repeat-containing 98.5 2.3E-05 5E-10 73.1 18.7 252 152-468 294-564 (579)
131 PRK14720 transcript cleavage f 98.5 6.2E-05 1.3E-09 76.3 23.0 56 175-231 117-175 (906)
132 KOG3060 Uncharacterized conser 98.4 4.8E-05 1E-09 63.6 17.4 162 288-452 63-231 (289)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.9E-06 8.4E-11 77.5 12.1 122 347-473 173-295 (395)
134 KOG3081 Vesicle coat complex C 98.4 0.00015 3.2E-09 61.3 19.9 90 321-413 186-276 (299)
135 KOG1914 mRNA cleavage and poly 98.4 0.0014 3.1E-08 61.1 27.5 113 6-118 31-166 (656)
136 TIGR02552 LcrH_SycD type III s 98.4 5.3E-06 1.2E-10 65.7 11.0 115 330-448 5-121 (135)
137 PLN02789 farnesyltranstransfer 98.3 0.00012 2.7E-09 66.4 20.0 228 178-446 41-307 (320)
138 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.0013 2.9E-08 59.9 25.6 137 306-445 395-535 (660)
139 PRK15179 Vi polysaccharide bio 98.3 1.4E-05 3E-10 80.0 14.2 141 307-451 85-227 (694)
140 TIGR02795 tol_pal_ybgF tol-pal 98.3 7.8E-06 1.7E-10 63.1 10.1 94 381-474 4-104 (119)
141 COG4783 Putative Zn-dependent 98.3 0.00016 3.5E-09 66.4 19.4 118 317-439 315-435 (484)
142 PF12895 Apc3: Anaphase-promot 98.3 4.7E-07 1E-11 64.7 2.6 79 392-471 2-83 (84)
143 PF09976 TPR_21: Tetratricopep 98.3 1.8E-05 3.9E-10 63.3 11.5 115 356-471 24-143 (145)
144 TIGR00756 PPR pentatricopeptid 98.3 2E-06 4.4E-11 49.5 4.4 35 309-343 1-35 (35)
145 cd00189 TPR Tetratricopeptide 98.2 1.1E-05 2.5E-10 59.1 9.1 92 382-473 3-95 (100)
146 TIGR00756 PPR pentatricopeptid 98.2 3.5E-06 7.6E-11 48.5 4.4 35 206-240 1-35 (35)
147 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.7E-11 48.0 4.4 33 309-341 2-34 (34)
148 PF13432 TPR_16: Tetratricopep 98.2 4.7E-06 1E-10 56.1 5.5 57 418-474 3-59 (65)
149 PF09976 TPR_21: Tetratricopep 98.1 9.4E-05 2E-09 59.1 13.2 124 310-438 14-144 (145)
150 PF13812 PPR_3: Pentatricopept 98.1 4.9E-06 1.1E-10 47.4 4.3 33 206-238 2-34 (34)
151 KOG0553 TPR repeat-containing 98.1 2E-05 4.4E-10 67.7 9.6 108 353-463 91-200 (304)
152 KOG0553 TPR repeat-containing 98.1 7.8E-06 1.7E-10 70.1 7.1 87 387-473 89-176 (304)
153 PLN03088 SGT1, suppressor of 98.1 1.6E-05 3.5E-10 73.8 9.6 108 350-459 9-117 (356)
154 PF13414 TPR_11: TPR repeat; P 98.1 1.4E-05 3E-10 54.5 6.5 63 411-473 2-65 (69)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.9E-05 8.5E-10 59.1 9.9 105 345-449 4-113 (119)
156 PF05843 Suf: Suppressor of fo 98.1 8.7E-05 1.9E-09 66.5 13.1 135 309-446 2-141 (280)
157 PF13432 TPR_16: Tetratricopep 98.1 1E-05 2.2E-10 54.4 5.4 62 385-446 3-65 (65)
158 PLN03088 SGT1, suppressor of 98.0 6.5E-05 1.4E-09 69.8 11.3 104 314-420 8-111 (356)
159 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 9.8E-05 2.1E-09 68.4 11.6 116 288-407 180-296 (395)
160 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0078 1.7E-07 54.6 23.3 104 315-437 184-287 (319)
161 COG4235 Cytochrome c biogenesi 97.9 0.00011 2.3E-09 63.7 10.2 109 375-483 152-265 (287)
162 KOG2053 Mitochondrial inherita 97.9 0.032 6.9E-07 55.8 36.5 424 6-478 21-506 (932)
163 PF14559 TPR_19: Tetratricopep 97.9 1.3E-05 2.9E-10 54.5 3.7 52 423-474 2-53 (68)
164 PRK15331 chaperone protein Sic 97.9 9E-05 2E-09 58.4 8.5 90 385-474 43-133 (165)
165 CHL00033 ycf3 photosystem I as 97.9 9.3E-05 2E-09 61.0 9.3 95 379-473 35-140 (168)
166 PRK02603 photosystem I assembl 97.9 0.0001 2.3E-09 60.9 9.5 83 379-461 35-121 (172)
167 PRK02603 photosystem I assembl 97.9 0.00022 4.7E-09 59.0 11.0 131 308-462 35-167 (172)
168 PRK10153 DNA-binding transcrip 97.8 0.00049 1.1E-08 66.9 14.7 68 379-446 420-487 (517)
169 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.1E-10 43.4 3.4 31 309-339 1-31 (31)
170 cd00189 TPR Tetratricopeptide 97.8 0.00012 2.5E-09 53.6 8.0 91 351-443 8-99 (100)
171 PRK10803 tol-pal system protei 97.8 0.00015 3.3E-09 63.6 9.6 86 390-475 154-246 (263)
172 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.8E-10 42.9 3.5 31 206-236 1-31 (31)
173 PF14938 SNAP: Soluble NSF att 97.8 0.00063 1.4E-08 61.3 13.6 85 150-234 121-225 (282)
174 PF14559 TPR_19: Tetratricopep 97.8 1.9E-05 4.1E-10 53.7 2.8 56 392-447 4-60 (68)
175 PF13371 TPR_9: Tetratricopept 97.8 9.4E-05 2E-09 51.0 6.2 54 420-473 3-56 (73)
176 PF13414 TPR_11: TPR repeat; P 97.7 3.6E-05 7.7E-10 52.5 3.7 66 378-443 2-69 (69)
177 COG4700 Uncharacterized protei 97.7 0.0031 6.8E-08 50.4 14.6 133 339-473 85-220 (251)
178 KOG2041 WD40 repeat protein [G 97.7 0.034 7.3E-07 53.9 23.8 198 144-370 853-1084(1189)
179 PRK10153 DNA-binding transcrip 97.7 0.00044 9.4E-09 67.3 11.8 146 338-487 332-494 (517)
180 KOG2041 WD40 repeat protein [G 97.7 0.06 1.3E-06 52.3 26.6 59 381-439 1023-1084(1189)
181 PF14938 SNAP: Soluble NSF att 97.7 0.0031 6.7E-08 56.9 16.3 119 288-406 125-264 (282)
182 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.3E-09 52.4 5.4 81 356-437 2-83 (84)
183 PF13371 TPR_9: Tetratricopept 97.6 0.00021 4.6E-09 49.2 6.2 66 386-451 2-68 (73)
184 PF12688 TPR_5: Tetratrico pep 97.6 0.00093 2E-08 50.6 9.8 88 385-472 7-101 (120)
185 KOG0550 Molecular chaperone (D 97.6 0.0028 6E-08 57.2 14.1 84 390-473 260-348 (486)
186 PF13431 TPR_17: Tetratricopep 97.6 6.1E-05 1.3E-09 42.4 2.2 34 434-467 1-34 (34)
187 PRK15363 pathogenicity island 97.5 0.00079 1.7E-08 52.9 8.8 97 345-444 37-135 (157)
188 CHL00033 ycf3 photosystem I as 97.5 0.001 2.3E-08 54.7 10.2 111 349-462 41-167 (168)
189 PF08579 RPM2: Mitochondrial r 97.5 0.00074 1.6E-08 49.1 7.5 89 207-355 27-116 (120)
190 KOG2053 Mitochondrial inherita 97.5 0.15 3.2E-06 51.3 30.7 81 4-84 53-136 (932)
191 PF05843 Suf: Suppressor of fo 97.4 0.00055 1.2E-08 61.4 8.1 133 344-478 2-139 (280)
192 PRK10866 outer membrane biogen 97.4 0.015 3.3E-07 50.8 16.5 157 314-473 38-239 (243)
193 PRK10803 tol-pal system protei 97.3 0.0018 4E-08 56.9 10.0 103 345-447 145-252 (263)
194 PF13428 TPR_14: Tetratricopep 97.3 0.0005 1.1E-08 41.6 4.5 42 413-454 2-43 (44)
195 PF04840 Vps16_C: Vps16, C-ter 97.3 0.12 2.6E-06 47.1 23.7 112 343-472 177-288 (319)
196 COG4235 Cytochrome c biogenesi 97.3 0.0068 1.5E-07 52.8 12.8 105 340-446 153-261 (287)
197 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.14 2.9E-06 47.4 23.2 408 45-473 29-529 (660)
198 PF12688 TPR_5: Tetratrico pep 97.3 0.0045 9.8E-08 46.9 10.1 93 314-406 7-102 (120)
199 PF08579 RPM2: Mitochondrial r 97.3 0.0029 6.3E-08 46.1 8.4 81 310-391 27-116 (120)
200 KOG2796 Uncharacterized conser 97.3 0.0085 1.8E-07 50.8 12.3 138 310-448 179-322 (366)
201 PF10037 MRP-S27: Mitochondria 97.3 0.0027 5.9E-08 59.3 10.5 110 144-253 67-186 (429)
202 PF10037 MRP-S27: Mitochondria 97.2 0.0029 6.3E-08 59.2 10.5 104 288-392 77-186 (429)
203 PF03704 BTAD: Bacterial trans 97.2 0.0056 1.2E-07 49.0 11.1 61 413-473 63-123 (146)
204 KOG1538 Uncharacterized conser 97.2 0.043 9.3E-07 52.8 17.6 87 343-439 747-844 (1081)
205 PRK10866 outer membrane biogen 97.2 0.031 6.6E-07 48.9 15.9 54 179-232 180-239 (243)
206 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0019 4.1E-08 59.9 8.5 63 379-441 75-141 (453)
207 PF06239 ECSIT: Evolutionarily 97.2 0.004 8.6E-08 51.5 9.4 101 293-394 30-153 (228)
208 PF06239 ECSIT: Evolutionarily 97.1 0.02 4.2E-07 47.6 12.8 113 195-359 35-154 (228)
209 KOG4555 TPR repeat-containing 97.1 0.0041 8.9E-08 46.5 8.0 86 388-473 52-142 (175)
210 PF13424 TPR_12: Tetratricopep 97.1 0.0017 3.8E-08 45.3 6.0 61 413-473 6-73 (78)
211 COG4700 Uncharacterized protei 97.1 0.022 4.8E-07 45.7 12.2 134 306-439 87-220 (251)
212 PF13512 TPR_18: Tetratricopep 97.1 0.01 2.2E-07 45.9 10.1 62 387-448 18-83 (142)
213 COG1729 Uncharacterized protei 97.0 0.0044 9.6E-08 53.3 8.4 99 381-480 144-249 (262)
214 KOG0543 FKBP-type peptidyl-pro 97.0 0.0089 1.9E-07 54.2 10.6 94 380-473 258-353 (397)
215 KOG2796 Uncharacterized conser 96.9 0.046 1E-06 46.6 13.1 128 345-473 179-313 (366)
216 KOG1130 Predicted G-alpha GTPa 96.9 0.024 5.1E-07 51.4 12.0 130 344-473 196-342 (639)
217 PF04184 ST7: ST7 protein; In 96.8 0.11 2.4E-06 48.8 16.6 120 348-468 264-407 (539)
218 KOG1258 mRNA processing protei 96.8 0.5 1.1E-05 45.6 25.5 384 47-460 34-489 (577)
219 KOG2280 Vacuolar assembly/sort 96.8 0.51 1.1E-05 46.7 21.0 117 2-118 445-575 (829)
220 PF13525 YfiO: Outer membrane 96.8 0.025 5.4E-07 48.1 11.5 49 418-466 147-198 (203)
221 COG4105 ComL DNA uptake lipopr 96.8 0.3 6.5E-06 42.0 19.3 165 315-480 41-238 (254)
222 COG3898 Uncharacterized membra 96.7 0.45 9.7E-06 43.3 25.2 125 91-234 84-217 (531)
223 PF13525 YfiO: Outer membrane 96.7 0.013 2.8E-07 49.9 9.2 144 315-480 12-175 (203)
224 PF13281 DUF4071: Domain of un 96.7 0.17 3.6E-06 46.7 16.6 165 274-446 143-339 (374)
225 KOG0550 Molecular chaperone (D 96.7 0.092 2E-06 47.9 14.2 89 353-444 259-353 (486)
226 KOG1538 Uncharacterized conser 96.5 0.2 4.4E-06 48.4 16.3 102 293-406 732-844 (1081)
227 PF12921 ATP13: Mitochondrial 96.5 0.02 4.3E-07 43.9 8.0 80 308-387 2-96 (126)
228 KOG1585 Protein required for f 96.5 0.16 3.4E-06 43.0 13.5 190 26-228 32-250 (308)
229 KOG2610 Uncharacterized conser 96.5 0.1 2.2E-06 46.3 12.9 159 320-481 115-283 (491)
230 KOG0543 FKBP-type peptidyl-pro 96.4 0.012 2.6E-07 53.5 7.3 89 386-474 215-319 (397)
231 COG3898 Uncharacterized membra 96.4 0.73 1.6E-05 42.0 24.6 270 156-473 97-390 (531)
232 PF13512 TPR_18: Tetratricopep 96.3 0.038 8.1E-07 42.8 8.7 92 355-446 22-133 (142)
233 PF10300 DUF3808: Protein of u 96.3 0.24 5.2E-06 48.2 16.3 159 312-473 192-374 (468)
234 PF13424 TPR_12: Tetratricopep 96.3 0.0081 1.8E-07 41.9 4.6 59 175-233 6-74 (78)
235 PRK11906 transcriptional regul 96.3 0.041 9E-07 51.4 10.0 88 359-448 320-408 (458)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.022 4.8E-07 53.0 8.3 63 411-473 74-139 (453)
237 KOG1920 IkappaB kinase complex 96.2 2.2 4.7E-05 44.9 23.8 134 288-438 919-1052(1265)
238 COG0457 NrfG FOG: TPR repeat [ 96.0 0.83 1.8E-05 39.5 17.6 182 288-473 70-263 (291)
239 COG4105 ComL DNA uptake lipopr 96.0 0.72 1.6E-05 39.7 15.4 172 25-233 35-232 (254)
240 PF03704 BTAD: Bacterial trans 96.0 0.04 8.8E-07 44.0 7.8 73 310-383 64-140 (146)
241 PF07079 DUF1347: Protein of u 96.0 1.4 3.1E-05 41.1 25.7 205 25-241 77-332 (549)
242 COG1729 Uncharacterized protei 96.0 0.053 1.2E-06 46.8 8.6 103 345-448 144-251 (262)
243 KOG1130 Predicted G-alpha GTPa 95.9 0.014 3E-07 52.9 5.2 93 142-234 234-344 (639)
244 KOG1585 Protein required for f 95.9 0.27 5.8E-06 41.7 11.9 169 58-235 31-220 (308)
245 PRK11906 transcriptional regul 95.8 0.36 7.7E-06 45.4 13.8 78 394-471 319-397 (458)
246 PF13281 DUF4071: Domain of un 95.8 0.56 1.2E-05 43.3 14.9 163 311-474 144-333 (374)
247 PF00515 TPR_1: Tetratricopept 95.8 0.024 5.2E-07 31.8 4.1 32 413-444 2-33 (34)
248 KOG4234 TPR repeat-containing 95.7 0.052 1.1E-06 44.2 7.1 103 351-455 103-211 (271)
249 PF07719 TPR_2: Tetratricopept 95.7 0.036 7.7E-07 31.0 4.8 33 413-445 2-34 (34)
250 PRK11619 lytic murein transgly 95.7 2.8 6.1E-05 42.6 30.2 114 322-438 255-372 (644)
251 COG3118 Thioredoxin domain-con 95.6 0.66 1.4E-05 40.8 13.9 113 5-117 145-264 (304)
252 COG0457 NrfG FOG: TPR repeat [ 95.6 1.1 2.3E-05 38.8 16.4 164 308-474 59-230 (291)
253 PF09205 DUF1955: Domain of un 95.5 0.78 1.7E-05 34.9 12.0 139 319-477 13-152 (161)
254 PF12921 ATP13: Mitochondrial 95.4 0.3 6.4E-06 37.5 10.0 47 203-249 50-97 (126)
255 PF04053 Coatomer_WDAD: Coatom 95.4 1.3 2.8E-05 42.5 16.5 131 66-234 269-402 (443)
256 PF04053 Coatomer_WDAD: Coatom 95.4 0.18 3.9E-06 48.2 10.8 154 7-202 274-430 (443)
257 PF13428 TPR_14: Tetratricopep 95.3 0.023 4.9E-07 34.3 3.0 39 380-418 2-41 (44)
258 COG3118 Thioredoxin domain-con 95.2 1.8 3.9E-05 38.2 15.2 50 319-369 145-194 (304)
259 KOG3941 Intermediate in Toll s 95.2 0.18 3.9E-06 43.6 9.0 112 294-406 51-186 (406)
260 PRK11619 lytic murein transgly 95.1 4.4 9.5E-05 41.3 37.7 437 5-466 44-496 (644)
261 smart00299 CLH Clathrin heavy 95.0 1.4 3E-05 34.8 15.5 88 27-117 9-97 (140)
262 PF02259 FAT: FAT domain; Int 95.0 3.1 6.8E-05 38.9 21.6 150 307-459 145-305 (352)
263 KOG1941 Acetylcholine receptor 95.0 0.55 1.2E-05 42.3 11.6 126 348-473 127-273 (518)
264 PRK15331 chaperone protein Sic 95.0 0.43 9.3E-06 38.1 9.9 86 318-406 47-132 (165)
265 COG4785 NlpI Lipoprotein NlpI, 94.9 2 4.3E-05 36.0 14.8 174 290-473 78-264 (297)
266 smart00299 CLH Clathrin heavy 94.7 1.6 3.6E-05 34.3 13.9 128 309-457 8-136 (140)
267 PF10300 DUF3808: Protein of u 94.6 0.35 7.6E-06 47.0 10.6 143 328-474 177-333 (468)
268 KOG3941 Intermediate in Toll s 94.6 0.55 1.2E-05 40.8 10.3 114 194-359 54-174 (406)
269 KOG2610 Uncharacterized conser 94.3 0.5 1.1E-05 42.1 9.6 117 355-473 115-236 (491)
270 KOG4648 Uncharacterized conser 93.9 0.13 2.8E-06 45.7 5.5 96 350-448 104-201 (536)
271 PF09205 DUF1955: Domain of un 93.9 2.2 4.8E-05 32.5 11.3 62 176-237 88-152 (161)
272 PF13181 TPR_8: Tetratricopept 93.9 0.15 3.2E-06 28.4 4.0 31 414-444 3-33 (34)
273 PF13176 TPR_7: Tetratricopept 93.8 0.12 2.6E-06 29.4 3.6 23 415-437 2-24 (36)
274 KOG0890 Protein kinase of the 93.7 17 0.00036 42.0 23.0 155 30-211 1388-1552(2382)
275 PF13170 DUF4003: Protein of u 93.7 2.7 5.8E-05 38.0 13.6 135 221-389 78-227 (297)
276 KOG1941 Acetylcholine receptor 93.7 0.48 1E-05 42.7 8.5 150 69-232 17-189 (518)
277 PF07035 Mic1: Colon cancer-as 93.6 2.9 6.3E-05 33.8 12.1 34 330-363 16-49 (167)
278 PRK09687 putative lyase; Provi 93.5 5.4 0.00012 35.8 23.3 228 170-444 33-266 (280)
279 PF09613 HrpB1_HrpK: Bacterial 93.5 2.5 5.4E-05 33.7 11.4 108 354-466 21-129 (160)
280 PF13176 TPR_7: Tetratricopept 93.4 0.11 2.4E-06 29.5 3.0 26 448-473 1-26 (36)
281 PF04184 ST7: ST7 protein; In 93.4 4.5 9.8E-05 38.6 14.6 57 383-439 263-322 (539)
282 KOG1920 IkappaB kinase complex 93.4 7.2 0.00016 41.4 17.2 126 72-232 894-1026(1265)
283 KOG2114 Vacuolar assembly/sort 93.3 11 0.00023 38.6 26.7 53 385-439 711-763 (933)
284 KOG4234 TPR repeat-containing 93.3 0.74 1.6E-05 37.8 8.3 84 390-473 106-195 (271)
285 KOG4555 TPR repeat-containing 93.3 0.5 1.1E-05 35.7 6.8 90 353-444 53-147 (175)
286 KOG2066 Vacuolar assembly/sort 93.2 10 0.00023 38.3 26.2 74 64-139 362-440 (846)
287 PF02259 FAT: FAT domain; Int 93.2 5.2 0.00011 37.4 15.7 63 172-234 144-213 (352)
288 COG3629 DnrI DNA-binding trans 93.2 0.63 1.4E-05 41.1 8.5 58 416-473 157-214 (280)
289 PF09613 HrpB1_HrpK: Bacterial 92.9 0.78 1.7E-05 36.5 7.8 83 380-462 8-94 (160)
290 KOG4642 Chaperone-dependent E3 92.5 0.53 1.1E-05 39.8 6.7 82 392-473 23-105 (284)
291 PF13170 DUF4003: Protein of u 92.5 7.2 0.00016 35.3 14.4 159 324-484 78-255 (297)
292 PF13174 TPR_6: Tetratricopept 92.2 0.39 8.4E-06 26.3 4.1 27 418-444 6-32 (33)
293 COG4649 Uncharacterized protei 92.2 1.9 4.2E-05 34.6 9.0 120 318-440 68-195 (221)
294 TIGR02561 HrpB1_HrpK type III 92.1 0.96 2.1E-05 35.3 7.2 71 391-461 22-93 (153)
295 PF04190 DUF410: Protein of un 92.0 8.4 0.00018 34.2 14.6 115 108-233 55-169 (260)
296 PF08631 SPO22: Meiosis protei 91.7 9.7 0.00021 34.3 21.9 121 100-234 4-150 (278)
297 PF13431 TPR_17: Tetratricopep 91.7 0.11 2.4E-06 29.1 1.4 25 408-432 8-33 (34)
298 PRK10941 hypothetical protein; 91.6 1.3 2.9E-05 39.2 8.6 69 414-482 183-251 (269)
299 PF10602 RPN7: 26S proteasome 91.4 2.8 6E-05 34.6 9.9 94 310-406 38-140 (177)
300 PF00515 TPR_1: Tetratricopept 91.4 0.3 6.6E-06 27.1 3.1 32 26-57 2-33 (34)
301 KOG4648 Uncharacterized conser 91.4 0.68 1.5E-05 41.4 6.4 94 316-413 105-199 (536)
302 KOG1586 Protein required for f 91.2 8.7 0.00019 32.8 12.2 23 426-448 209-231 (288)
303 KOG2280 Vacuolar assembly/sort 91.2 18 0.0004 36.5 33.2 322 92-469 440-793 (829)
304 COG4785 NlpI Lipoprotein NlpI, 90.9 0.64 1.4E-05 38.7 5.4 112 353-470 75-190 (297)
305 PF07721 TPR_4: Tetratricopept 90.5 0.35 7.6E-06 25.0 2.5 24 447-470 2-25 (26)
306 KOG1586 Protein required for f 90.4 7.7 0.00017 33.1 11.3 149 288-448 25-190 (288)
307 PF10345 Cohesin_load: Cohesin 90.4 23 0.00049 36.2 25.7 109 6-115 72-205 (608)
308 COG3629 DnrI DNA-binding trans 90.4 1.8 3.9E-05 38.3 8.2 72 60-131 155-236 (280)
309 PF00637 Clathrin: Region in C 90.2 0.022 4.7E-07 45.4 -3.4 51 32-82 14-66 (143)
310 TIGR02561 HrpB1_HrpK type III 90.2 7.7 0.00017 30.5 10.8 95 154-248 21-120 (153)
311 PF07719 TPR_2: Tetratricopept 90.1 0.47 1E-05 26.2 3.1 31 27-57 3-33 (34)
312 COG4649 Uncharacterized protei 90.1 8.9 0.00019 31.0 14.7 25 449-473 170-194 (221)
313 PF14853 Fis1_TPR_C: Fis1 C-te 90.0 1.6 3.5E-05 27.4 5.6 34 416-449 5-38 (53)
314 COG2976 Uncharacterized protei 90.0 10 0.00022 31.4 11.6 92 350-445 96-192 (207)
315 PF06552 TOM20_plant: Plant sp 89.8 0.85 1.8E-05 36.9 5.2 46 428-473 51-100 (186)
316 PF13374 TPR_10: Tetratricopep 89.8 0.82 1.8E-05 26.7 4.2 26 414-439 4-29 (42)
317 PF13174 TPR_6: Tetratricopept 89.5 0.51 1.1E-05 25.8 2.9 30 448-477 2-31 (33)
318 PF04097 Nic96: Nup93/Nic96; 89.4 27 0.00059 35.6 21.2 36 213-250 266-301 (613)
319 COG3947 Response regulator con 89.3 15 0.00033 32.5 15.2 61 414-474 281-341 (361)
320 KOG0376 Serine-threonine phosp 89.2 0.22 4.9E-06 46.5 1.9 99 350-451 11-111 (476)
321 PRK09687 putative lyase; Provi 89.1 16 0.00036 32.8 24.8 85 148-233 147-233 (280)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 1.6 3.4E-05 31.1 5.4 62 324-387 23-84 (103)
323 PF10602 RPN7: 26S proteasome 88.9 6.5 0.00014 32.5 10.1 59 60-118 38-102 (177)
324 KOG2114 Vacuolar assembly/sort 88.8 31 0.00066 35.5 26.2 164 61-231 337-516 (933)
325 PF11207 DUF2989: Protein of u 88.5 13 0.00029 31.0 11.5 79 387-466 115-198 (203)
326 smart00028 TPR Tetratricopepti 88.5 1.1 2.3E-05 23.8 3.9 30 415-444 4-33 (34)
327 COG2909 MalT ATP-dependent tra 88.3 34 0.00074 35.5 25.5 225 215-471 425-684 (894)
328 PF07035 Mic1: Colon cancer-as 87.7 14 0.00029 30.1 12.1 58 310-371 91-148 (167)
329 KOG4570 Uncharacterized conser 87.3 2.3 5E-05 37.7 6.6 97 267-372 59-164 (418)
330 KOG1308 Hsp70-interacting prot 87.3 0.42 9.1E-06 42.7 2.2 117 354-473 125-242 (377)
331 KOG0276 Vesicle coat complex C 87.1 3.9 8.5E-05 39.8 8.5 151 7-202 599-749 (794)
332 PF02284 COX5A: Cytochrome c o 86.8 1.7 3.6E-05 31.4 4.5 60 326-387 28-87 (108)
333 KOG1258 mRNA processing protei 86.7 34 0.00074 33.7 25.8 178 173-393 296-489 (577)
334 PRK15180 Vi polysaccharide bio 86.6 9.5 0.00021 36.2 10.4 117 355-473 301-418 (831)
335 TIGR02508 type_III_yscG type I 86.4 10 0.00022 27.4 9.0 57 288-347 50-106 (115)
336 COG2976 Uncharacterized protei 85.7 19 0.00042 29.9 14.0 87 149-235 95-189 (207)
337 KOG1464 COP9 signalosome, subu 85.6 24 0.00052 30.9 17.5 259 101-439 39-330 (440)
338 PF08631 SPO22: Meiosis protei 85.6 27 0.00058 31.4 19.6 161 309-473 85-273 (278)
339 PF10345 Cohesin_load: Cohesin 85.4 47 0.001 34.0 25.2 170 56-251 28-234 (608)
340 KOG2300 Uncharacterized conser 85.2 36 0.00079 32.6 29.5 418 32-484 14-526 (629)
341 PF13181 TPR_8: Tetratricopept 85.1 1.8 3.9E-05 23.8 3.5 27 447-473 2-28 (34)
342 PF00637 Clathrin: Region in C 85.1 0.44 9.6E-06 37.8 1.2 54 349-403 13-66 (143)
343 KOG0890 Protein kinase of the 84.6 90 0.002 36.7 21.9 62 379-441 1670-1731(2382)
344 KOG1464 COP9 signalosome, subu 84.0 29 0.00062 30.4 15.7 58 348-405 150-217 (440)
345 KOG3364 Membrane protein invol 83.9 13 0.00029 28.7 8.3 73 376-448 29-107 (149)
346 PF13374 TPR_10: Tetratricopep 83.6 2.9 6.4E-05 24.2 4.2 28 206-233 3-30 (42)
347 COG3947 Response regulator con 83.5 24 0.00051 31.4 10.8 58 176-233 281-341 (361)
348 PF06552 TOM20_plant: Plant sp 83.3 2.5 5.5E-05 34.3 4.7 60 395-455 51-122 (186)
349 PRK10941 hypothetical protein; 83.0 4 8.8E-05 36.2 6.4 69 382-450 184-253 (269)
350 KOG0276 Vesicle coat complex C 82.6 22 0.00048 35.0 11.2 47 185-233 648-694 (794)
351 COG1747 Uncharacterized N-term 82.6 49 0.0011 32.1 16.6 58 175-233 67-126 (711)
352 smart00386 HAT HAT (Half-A-TPR 82.2 3.4 7.4E-05 22.2 3.9 30 426-455 1-30 (33)
353 PF02284 COX5A: Cytochrome c o 82.2 6.9 0.00015 28.4 5.9 42 409-450 42-83 (108)
354 TIGR03504 FimV_Cterm FimV C-te 81.9 3.8 8.2E-05 24.5 4.0 28 210-237 4-31 (44)
355 PF04190 DUF410: Protein of un 81.7 38 0.00081 30.1 12.4 89 378-483 89-179 (260)
356 KOG2066 Vacuolar assembly/sort 81.6 67 0.0014 33.0 24.8 76 32-107 363-441 (846)
357 TIGR02508 type_III_yscG type I 81.5 18 0.00039 26.2 9.8 62 181-245 46-107 (115)
358 COG4455 ImpE Protein of avirul 81.4 6.7 0.00015 33.0 6.5 65 382-446 4-69 (273)
359 TIGR02270 conserved hypothetic 80.9 54 0.0012 31.4 22.6 172 32-230 45-216 (410)
360 cd00923 Cyt_c_Oxidase_Va Cytoc 80.9 11 0.00024 27.0 6.5 35 409-443 39-73 (103)
361 KOG4507 Uncharacterized conser 80.8 10 0.00022 37.0 8.3 87 392-478 620-708 (886)
362 PF04097 Nic96: Nup93/Nic96; 80.8 68 0.0015 32.8 14.9 38 180-217 117-157 (613)
363 KOG0551 Hsp90 co-chaperone CNS 80.6 5.3 0.00012 35.9 6.0 85 386-470 88-177 (390)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 80.5 13 0.00027 28.7 7.6 42 430-471 81-124 (126)
365 KOG2396 HAT (Half-A-TPR) repea 80.4 58 0.0013 31.5 29.1 99 375-473 455-557 (568)
366 KOG2422 Uncharacterized conser 78.7 34 0.00074 33.6 11.0 51 388-438 351-404 (665)
367 PF11207 DUF2989: Protein of u 78.6 7.1 0.00015 32.5 5.9 22 410-431 176-197 (203)
368 KOG4279 Serine/threonine prote 78.5 55 0.0012 33.4 12.5 65 175-239 202-279 (1226)
369 COG5191 Uncharacterized conser 78.5 3.1 6.7E-05 36.9 4.0 82 374-455 102-185 (435)
370 COG5159 RPN6 26S proteasome re 77.8 20 0.00044 31.6 8.5 29 450-478 129-157 (421)
371 KOG2300 Uncharacterized conser 77.2 72 0.0016 30.8 24.9 346 10-404 70-510 (629)
372 TIGR02270 conserved hypothetic 76.9 72 0.0016 30.6 20.7 121 11-136 53-175 (410)
373 PF04910 Tcf25: Transcriptiona 76.8 31 0.00067 32.4 10.4 63 411-473 99-166 (360)
374 PF10579 Rapsyn_N: Rapsyn N-te 76.7 6.2 0.00014 27.0 4.2 45 424-468 18-65 (80)
375 COG4976 Predicted methyltransf 75.4 5.2 0.00011 33.9 4.3 58 388-445 4-62 (287)
376 KOG0545 Aryl-hydrocarbon recep 75.4 49 0.0011 28.7 9.9 61 385-445 236-297 (329)
377 KOG1498 26S proteasome regulat 75.3 72 0.0016 29.8 16.2 194 38-248 25-256 (439)
378 PF10366 Vps39_1: Vacuolar sor 74.9 32 0.0007 25.6 8.4 40 292-336 28-67 (108)
379 KOG4507 Uncharacterized conser 74.6 18 0.00039 35.5 8.0 100 353-455 617-719 (886)
380 PF13934 ELYS: Nuclear pore co 74.5 34 0.00073 29.6 9.3 101 28-133 79-183 (226)
381 PF13929 mRNA_stabil: mRNA sta 74.4 64 0.0014 28.8 10.9 106 9-114 143-263 (292)
382 COG1747 Uncharacterized N-term 74.4 89 0.0019 30.5 15.9 162 288-456 77-249 (711)
383 PF12968 DUF3856: Domain of Un 74.3 22 0.00048 26.8 6.7 62 412-473 55-127 (144)
384 KOG0376 Serine-threonine phosp 73.7 9.3 0.0002 36.3 6.0 106 315-425 11-118 (476)
385 PF00244 14-3-3: 14-3-3 protei 72.7 53 0.0011 28.7 10.2 165 313-478 6-202 (236)
386 TIGR03504 FimV_Cterm FimV C-te 72.4 7 0.00015 23.4 3.3 25 314-338 5-29 (44)
387 PF14561 TPR_20: Tetratricopep 72.0 11 0.00024 26.9 4.9 64 409-472 18-85 (90)
388 KOG4570 Uncharacterized conser 71.9 46 0.001 30.0 9.3 97 307-406 63-162 (418)
389 KOG2034 Vacuolar sorting prote 71.1 1.4E+02 0.003 31.3 20.5 66 151-222 366-433 (911)
390 KOG3807 Predicted membrane pro 70.6 84 0.0018 28.6 13.5 35 430-464 380-420 (556)
391 PF07163 Pex26: Pex26 protein; 70.5 35 0.00077 30.2 8.2 87 315-404 90-183 (309)
392 COG2912 Uncharacterized conser 70.1 21 0.00047 31.4 7.0 66 416-481 185-250 (269)
393 PRK13800 putative oxidoreducta 69.7 1.7E+02 0.0037 31.7 26.4 61 168-231 722-783 (897)
394 PRK15180 Vi polysaccharide bio 69.6 1.1E+02 0.0024 29.5 24.0 86 33-118 331-420 (831)
395 KOG4077 Cytochrome c oxidase, 69.4 15 0.00033 27.9 5.0 47 326-372 67-113 (149)
396 PF09670 Cas_Cas02710: CRISPR- 67.8 62 0.0013 30.7 10.2 55 317-372 140-198 (379)
397 PF11846 DUF3366: Domain of un 67.5 11 0.00024 31.7 4.8 44 400-443 132-175 (193)
398 KOG3824 Huntingtin interacting 67.3 11 0.00024 33.5 4.7 61 390-450 127-188 (472)
399 KOG1308 Hsp70-interacting prot 67.1 9.1 0.0002 34.7 4.2 83 391-473 126-209 (377)
400 KOG2297 Predicted translation 66.8 99 0.0021 27.9 12.9 21 308-328 321-341 (412)
401 cd08819 CARD_MDA5_2 Caspase ac 66.8 23 0.00049 25.0 5.2 60 165-225 24-86 (88)
402 COG4455 ImpE Protein of avirul 66.5 82 0.0018 26.9 12.3 73 311-387 4-80 (273)
403 PF10366 Vps39_1: Vacuolar sor 66.3 23 0.00051 26.3 5.7 28 206-233 40-67 (108)
404 PF12862 Apc5: Anaphase-promot 66.3 22 0.00047 25.6 5.5 52 422-473 8-68 (94)
405 PF09986 DUF2225: Uncharacteri 66.0 34 0.00074 29.3 7.5 60 414-473 120-192 (214)
406 cd00280 TRFH Telomeric Repeat 64.4 30 0.00065 28.4 6.2 20 34-53 120-139 (200)
407 PRK13800 putative oxidoreducta 64.3 2.2E+02 0.0047 31.0 25.9 108 171-282 753-862 (897)
408 PF11846 DUF3366: Domain of un 64.0 19 0.00041 30.2 5.6 56 355-410 120-175 (193)
409 PF10579 Rapsyn_N: Rapsyn N-te 63.3 13 0.00029 25.5 3.5 44 321-364 19-64 (80)
410 KOG0686 COP9 signalosome, subu 63.3 1.4E+02 0.003 28.3 15.2 60 142-201 149-214 (466)
411 smart00777 Mad3_BUB1_I Mad3/BU 63.3 50 0.0011 25.4 7.1 40 431-470 82-123 (125)
412 KOG1550 Extracellular protein 63.0 1.8E+02 0.0038 29.5 15.5 170 293-473 228-424 (552)
413 KOG4642 Chaperone-dependent E3 61.5 1.1E+02 0.0024 26.6 9.7 80 357-439 24-105 (284)
414 KOG3824 Huntingtin interacting 61.4 12 0.00025 33.4 3.7 54 354-410 127-181 (472)
415 KOG3364 Membrane protein invol 61.3 49 0.0011 25.7 6.5 65 409-473 29-98 (149)
416 cd00280 TRFH Telomeric Repeat 60.0 56 0.0012 26.9 7.0 14 359-372 85-98 (200)
417 KOG4279 Serine/threonine prote 59.8 1.1E+02 0.0024 31.4 10.3 103 309-414 202-322 (1226)
418 KOG1498 26S proteasome regulat 59.2 1.6E+02 0.0034 27.7 10.6 86 383-473 135-239 (439)
419 PF11663 Toxin_YhaV: Toxin wit 58.0 14 0.00031 28.4 3.3 31 321-353 108-138 (140)
420 cd08819 CARD_MDA5_2 Caspase ac 57.7 65 0.0014 22.8 6.6 57 77-136 21-80 (88)
421 KOG2063 Vacuolar assembly/sort 57.1 2.7E+02 0.0059 29.7 23.4 166 310-476 506-714 (877)
422 KOG2034 Vacuolar sorting prote 56.9 2.6E+02 0.0057 29.5 19.6 48 33-84 366-415 (911)
423 KOG0403 Neoplastic transformat 56.6 1.9E+02 0.0041 27.8 15.3 58 178-235 513-573 (645)
424 PF11848 DUF3368: Domain of un 55.7 45 0.00098 20.3 5.1 36 214-249 11-46 (48)
425 KOG1550 Extracellular protein 55.5 1.7E+02 0.0038 29.5 11.5 145 324-475 228-394 (552)
426 PF14561 TPR_20: Tetratricopep 55.3 74 0.0016 22.7 8.1 50 378-427 21-73 (90)
427 PF14689 SPOB_a: Sensor_kinase 55.1 18 0.0004 23.6 3.1 22 94-115 28-49 (62)
428 PF14853 Fis1_TPR_C: Fis1 C-te 54.7 38 0.00082 21.3 4.3 34 31-64 7-40 (53)
429 KOG4521 Nuclear pore complex, 54.2 2.9E+02 0.0062 30.3 12.5 121 346-468 986-1124(1480)
430 PF11848 DUF3368: Domain of un 53.3 50 0.0011 20.2 4.7 33 319-351 13-45 (48)
431 PF07163 Pex26: Pex26 protein; 52.9 59 0.0013 28.9 6.5 87 349-436 89-182 (309)
432 PF08424 NRDE-2: NRDE-2, neces 52.8 1.9E+02 0.0041 26.7 11.2 78 396-473 48-129 (321)
433 KOG4077 Cytochrome c oxidase, 52.4 50 0.0011 25.2 5.2 37 409-445 81-117 (149)
434 PF09797 NatB_MDM20: N-acetylt 52.3 51 0.0011 31.1 6.9 53 426-478 197-250 (365)
435 COG4259 Uncharacterized protei 51.5 92 0.002 22.6 6.2 53 362-415 56-108 (121)
436 KOG2396 HAT (Half-A-TPR) repea 51.3 2.5E+02 0.0054 27.5 28.0 111 293-406 444-557 (568)
437 PF08424 NRDE-2: NRDE-2, neces 51.1 2E+02 0.0044 26.5 11.9 110 362-473 50-181 (321)
438 PRK10564 maltose regulon perip 50.7 36 0.00078 30.6 5.1 46 203-248 254-300 (303)
439 KOG4567 GTPase-activating prot 50.5 2E+02 0.0043 26.2 9.4 43 329-371 264-306 (370)
440 COG2178 Predicted RNA-binding 50.2 1.4E+02 0.003 25.0 7.8 18 456-473 131-148 (204)
441 cd08326 CARD_CASP9 Caspase act 49.8 48 0.001 23.3 4.7 59 166-224 22-80 (84)
442 PF07720 TPR_3: Tetratricopept 49.5 48 0.001 18.8 4.7 17 418-434 7-23 (36)
443 COG4976 Predicted methyltransf 49.5 25 0.00055 30.0 3.7 52 422-473 5-56 (287)
444 PF13762 MNE1: Mitochondrial s 49.3 1.3E+02 0.0029 23.8 8.2 82 310-392 41-128 (145)
445 PF10255 Paf67: RNA polymerase 49.1 1.3E+02 0.0028 28.7 8.7 56 176-231 77-148 (404)
446 KOG2063 Vacuolar assembly/sort 49.0 3.7E+02 0.0079 28.8 23.1 28 206-233 505-532 (877)
447 KOG0545 Aryl-hydrocarbon recep 48.4 1.3E+02 0.0029 26.2 7.8 59 415-473 233-291 (329)
448 PF11817 Foie-gras_1: Foie gra 47.9 64 0.0014 28.4 6.4 50 63-112 183-241 (247)
449 COG0790 FOG: TPR repeat, SEL1 47.4 2.2E+02 0.0047 25.7 16.7 178 288-473 52-264 (292)
450 PRK10564 maltose regulon perip 47.0 36 0.00078 30.5 4.5 41 310-350 259-299 (303)
451 cd08326 CARD_CASP9 Caspase act 46.9 86 0.0019 22.0 5.6 55 79-135 20-74 (84)
452 PF09477 Type_III_YscG: Bacter 45.4 1.2E+02 0.0027 22.4 8.7 53 181-235 47-99 (116)
453 PF12862 Apc5: Anaphase-promot 44.9 1.1E+02 0.0025 21.8 6.8 50 36-85 9-68 (94)
454 PF14689 SPOB_a: Sensor_kinase 44.8 42 0.00091 21.9 3.6 27 207-233 25-51 (62)
455 COG5187 RPN7 26S proteasome re 44.4 2.4E+02 0.0052 25.4 10.9 98 308-406 115-219 (412)
456 PF06957 COPI_C: Coatomer (COP 44.2 2.4E+02 0.0053 27.1 9.7 111 318-446 214-334 (422)
457 PF10255 Paf67: RNA polymerase 43.9 2E+02 0.0044 27.5 9.1 57 176-232 124-191 (404)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 43.8 1.5E+02 0.0032 22.8 7.8 42 361-403 81-123 (126)
459 KOG2659 LisH motif-containing 43.7 2.1E+02 0.0046 24.6 9.4 98 339-439 22-130 (228)
460 KOG0991 Replication factor C, 42.8 2.3E+02 0.005 24.7 10.0 133 175-349 131-279 (333)
461 PHA02875 ankyrin repeat protei 42.7 3E+02 0.0064 26.4 10.7 139 288-436 76-223 (413)
462 PF09477 Type_III_YscG: Bacter 42.7 1.4E+02 0.003 22.2 8.4 78 38-117 19-97 (116)
463 KOG0686 COP9 signalosome, subu 42.1 3.1E+02 0.0068 26.1 12.9 58 176-233 152-215 (466)
464 KOG4814 Uncharacterized conser 42.1 1.1E+02 0.0023 30.8 7.1 83 391-473 366-455 (872)
465 PF11838 ERAP1_C: ERAP1-like C 41.8 2.8E+02 0.006 25.4 15.7 176 292-470 55-261 (324)
466 KOG2168 Cullins [Cell cycle co 41.7 4.5E+02 0.0097 27.8 18.8 34 215-250 478-511 (835)
467 PF13646 HEAT_2: HEAT repeats; 41.4 1.2E+02 0.0026 21.0 8.1 49 56-104 12-60 (88)
468 KOG2581 26S proteasome regulat 41.3 3.2E+02 0.007 26.0 11.6 148 307-456 125-299 (493)
469 PF11817 Foie-gras_1: Foie gra 40.4 1.1E+02 0.0024 26.9 6.7 53 416-468 182-240 (247)
470 PHA02537 M terminase endonucle 40.1 1.8E+02 0.0039 25.2 7.6 21 425-445 191-211 (230)
471 PF14863 Alkyl_sulf_dimr: Alky 40.0 1.8E+02 0.0039 22.9 7.0 62 396-461 58-119 (141)
472 COG4259 Uncharacterized protei 39.9 1.1E+02 0.0023 22.3 5.0 25 421-445 81-105 (121)
473 COG2909 MalT ATP-dependent tra 39.8 4.9E+02 0.011 27.7 24.4 210 151-368 423-684 (894)
474 PF13762 MNE1: Mitochondrial s 39.3 1.9E+02 0.0042 22.9 7.7 75 177-251 42-126 (145)
475 COG2912 Uncharacterized conser 38.8 72 0.0016 28.2 5.0 64 385-448 187-251 (269)
476 KOG0292 Vesicle coat complex C 38.3 26 0.00056 36.2 2.6 47 389-439 653-699 (1202)
477 KOG1463 26S proteasome regulat 38.1 3.3E+02 0.0072 25.2 14.7 157 288-444 139-319 (411)
478 PF10475 DUF2450: Protein of u 37.8 2.5E+02 0.0055 25.5 8.8 24 94-117 132-155 (291)
479 PF04910 Tcf25: Transcriptiona 37.3 3.6E+02 0.0078 25.4 16.4 89 385-473 109-220 (360)
480 PF04090 RNA_pol_I_TF: RNA pol 37.0 2.5E+02 0.0054 23.8 7.7 60 414-473 43-103 (199)
481 COG2178 Predicted RNA-binding 35.3 2.7E+02 0.0059 23.4 7.9 70 42-118 20-98 (204)
482 cd08332 CARD_CASP2 Caspase act 34.8 1.1E+02 0.0024 21.8 4.8 50 173-222 33-82 (90)
483 KOG1463 26S proteasome regulat 34.7 2.6E+02 0.0056 25.9 7.8 97 384-480 53-162 (411)
484 PF02184 HAT: HAT (Half-A-TPR) 34.4 61 0.0013 17.9 2.5 22 41-62 3-24 (32)
485 PF15469 Sec5: Exocyst complex 33.6 2.7E+02 0.006 23.0 7.9 56 311-372 60-115 (182)
486 COG5108 RPO41 Mitochondrial DN 33.2 1.8E+02 0.0039 29.5 7.1 70 29-98 32-112 (1117)
487 KOG4521 Nuclear pore complex, 32.7 5.5E+02 0.012 28.4 10.7 21 34-54 929-949 (1480)
488 cd08332 CARD_CASP2 Caspase act 32.4 1.8E+02 0.0038 20.8 5.4 52 79-132 24-75 (90)
489 smart00544 MA3 Domain in DAP-5 31.9 2.1E+02 0.0046 21.2 10.2 72 29-100 6-79 (113)
490 COG0735 Fur Fe2+/Zn2+ uptake r 31.8 1.6E+02 0.0034 23.4 5.7 17 356-372 33-49 (145)
491 COG0735 Fur Fe2+/Zn2+ uptake r 31.0 2E+02 0.0044 22.7 6.2 47 311-357 23-69 (145)
492 PRK11639 zinc uptake transcrip 31.0 1.9E+02 0.0041 23.7 6.2 44 314-357 31-74 (169)
493 PF12583 TPPII_N: Tripeptidyl 30.8 2.5E+02 0.0055 21.7 6.2 37 422-458 86-122 (139)
494 KOG0687 26S proteasome regulat 30.5 4.4E+02 0.0095 24.3 12.1 94 310-406 106-208 (393)
495 PF12926 MOZART2: Mitotic-spin 30.4 2E+02 0.0043 20.4 6.0 41 364-405 29-69 (88)
496 PF11663 Toxin_YhaV: Toxin wit 30.4 38 0.00082 26.2 1.8 33 215-249 105-137 (140)
497 PF07219 HemY_N: HemY protein 30.0 1E+02 0.0022 22.9 4.1 36 425-460 72-107 (108)
498 cd08323 CARD_APAF1 Caspase act 30.0 1.9E+02 0.004 20.5 5.1 60 165-224 19-78 (86)
499 KOG2297 Predicted translation 29.7 2.2E+02 0.0048 25.8 6.5 18 414-431 323-340 (412)
500 cd07153 Fur_like Ferric uptake 29.6 1.2E+02 0.0025 22.7 4.5 46 314-359 6-51 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.8e-73 Score=584.79 Aligned_cols=498 Identities=30% Similarity=0.483 Sum_probs=477.4
Q ss_pred CCcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHH
Q 046354 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
|++|++.|++++|.++|++|++||..+||++|.+|++.|++++|.++|++|.+. .||..+|+.++.+|++.|+.+.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 457899999999999999999999999999999999999999999999999876 699999999999999999999999
Q ss_pred HHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+++..+. .||..+||.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999994 48999999999999999999999999999998 9999999999999999999988
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (510)
+..+|..++.+|++.|+++.|.++++.+. .++..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 78899999999999999999999999887 7899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
+.|+.++|+.+|++|.. ++.||..||+.++.+|.+ +.....++..+.+.|+.++..++++++.+| +++|++
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y-----~k~G~~ 540 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY-----VRCGRM 540 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH-----HHcCCH
Confidence 99999999999999986 699999999999999864 566788899999999999999999999999 999999
Q ss_pred hhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh
Q 046354 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373 (510)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 373 (510)
++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 541 ~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 541 NYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
|+.|+..+|++++++|++.|++++|.+++++|+ ..||..+|++|+.+|..+|+.+.++...+++.+++|+++..|..++
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHH-HhhccccceeEEEeCCeeeEeeccc-----cccceeeccc
Q 046354 454 NVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPM-----REMGYVVLKE 508 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 508 (510)
++|...|+|++|.++.+.|+ +|+++.||.||+++++++|.|++++ .++||.+|++
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999854 5677777764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-70 Score=553.38 Aligned_cols=480 Identities=26% Similarity=0.429 Sum_probs=433.7
Q ss_pred CcccCCCChHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCCh
Q 046354 2 SQFGCTGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~ 74 (510)
..|.+.|++++|+++|+.|. .||..+|+.++.+|.+.++++.+.+++..|.+. .||..+|+.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 35677888888888888885 467888888888888888888888888888765 57888888888888888888
Q ss_pred hhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 046354 75 DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152 (510)
Q Consensus 75 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~ 152 (510)
+.|.++|++|.+||..+||.+|.+|++.|++++|.++|++|.+. .||..||+.++.+++..
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~----------------- 237 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL----------------- 237 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-----------------
Confidence 88888888888888888888888888888888888888888765 67777777766666554
Q ss_pred HHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 046354 153 LERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 228 (510)
|..+.+.+++..+. .+|..+|++++.+|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|
T Consensus 238 ----~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 ----GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred ----CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 45555666655443 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
++|.+.|+.||..||+.++.+|.+ +.....++..+.+.|++++..+++.++.+| +++|++++|.++|++|.+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y-----~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY-----SKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH-----HHCCCHHHHHHHHHhCCC
Confidence 999999999999999999999864 456778888899999999999999999999 999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+++|++.|++++|.+++++|. ..|+..+|++|+.+|..+|+++.|..+++++.++.|+++.+|..++++|.+.|+|++|
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 999999999999999999997 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhccccceeEEEeCCeeeEeeccc-----cccceeeccc
Q 046354 466 AQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPM-----REMGYVVLKE 508 (510)
Q Consensus 466 ~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 508 (510)
.++++.|+ +|+.+.|+.||+++++++|.|+++. .+++|..|++
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 99999999 9999999999999999999999853 4456655543
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-63 Score=515.33 Aligned_cols=468 Identities=24% Similarity=0.351 Sum_probs=442.3
Q ss_pred CCcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHH
Q 046354 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
|++|++.|+++.|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|... .||..+|+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 356899999999999999999999999999999999999999999999999865 699999999999999999999999
Q ss_pred HHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+++..+. .||..+||.||.+|++.|+++.|.++|++|.. ||..+|++++.+|++.|+.+++
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999984 48999999999999999999999999999998 9999999999999999999988
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (510)
+..+|+.++.++.+.|+.+.+.+++..+. .||..+|+.++.+|++.|++++|.++|++|..||..+|+.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 88999999999999999999999999887 7999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh---hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
+.|++++|+++|++|.+.|+.||..||+.++.+|. .......++..+.+.|..++..+++.++.+| ++.|++
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y-----~k~g~~ 440 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY-----SKCKCI 440 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-----HHcCCH
Confidence 99999999999999999999999999999999886 4566778888899999999999999999999 999999
Q ss_pred hhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh
Q 046354 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373 (510)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 373 (510)
++|.++|++|.++|..+|++++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~- 518 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT- 518 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999986 59999999999999999999999999999999998
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCCchhHHH
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSSSGAYVL 451 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~ 451 (510)
|+.++..++++|+++|+++|++++|.++|+.+ .||..+|++++.+|.++|+.++|.++|++|.+ ..|+ ..+|..
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ 594 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFIS 594 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHH
Confidence 99999999999999999999999999999998 68999999999999999999999999999985 4455 468999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhccccc
Q 046354 452 SANVHAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
++.+|.+.|++++|.++|+.|.+.....|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999854555554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.5e-60 Score=478.70 Aligned_cols=467 Identities=16% Similarity=0.226 Sum_probs=425.1
Q ss_pred cccCCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ-----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA 77 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 77 (510)
.|++.|++++|+++|++|.+ ++...++.++.+|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|+++.|
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHH
Confidence 46788999999999999984 4556677888899999999999999999998 9999999999999999999999
Q ss_pred HHHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh----------
Q 046354 78 RKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL---------- 141 (510)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a---------- 141 (510)
.++|+.|. .||..+|+.||.+|++.|+++.|.++|++|.+. .||..||+.+|.+|++.|+++.|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 99999995 489999999999999999999999999999976 79999999999999999999988
Q ss_pred ----hHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhh
Q 046354 142 ----EVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWT 207 (510)
Q Consensus 142 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 207 (510)
+..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ |+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 78999999999999999999999999984 68999999999999999999999999999986 78899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.++.. ......++..+.+.|..|+..+++.++.+|
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-- 694 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-- 694 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999998864 455677788888999999999999999999
Q ss_pred cccccccChhhHHHHhcccC----CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLE----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
++.|++++|.++|++|. .|+..+||+||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 695 ---~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 695 ---SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred ---HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999995 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cC-------------------ChHHHHHHHhhCCCC--CCcHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AG-------------------QVKEAMRVVSKMPPH--ERDHVVL 415 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~~~~--~p~~~~~ 415 (510)
.|.++++.|.+. |+.||..+|++++..|.+ ++ ..++|..+|++|.+. .||..+|
T Consensus 772 ~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 999999999998 999999999999876432 21 236799999999865 8999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHHH-Hhhcccc
Q 046354 416 GALLGACRLHGDVRMADYIGERLI-ELQPSSSGAYVLSANVHAARGEW-DEFAQVRKKME-RRVKKVA 480 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~~~p 480 (510)
+.++.++...+....+..+++.+. .-.+.+..+|..++..+ |++ ++|..++++|. .|+.+.-
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 999988888889999988888775 33345556799998876 443 58999999999 7766544
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-55 Score=445.72 Aligned_cols=445 Identities=15% Similarity=0.180 Sum_probs=402.9
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc---CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPES---QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 98 (510)
.++...|..++..+++.|++++|.++|++|.+. .++...++.++..|.+.|.+++|.++|+.|.+||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467888999999999999999999999999886 35777888899999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh--------------hHHHHHHHHHHHHhcCchHHH
Q 046354 99 YFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL--------------EVISWTTMCTGLERNAMTKLA 162 (510)
Q Consensus 99 ~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a--------------~~~~~~~l~~~~~~~~~~~~a 162 (510)
|++.|+++.|.++|++|.+. .||..+|+.++.+|++.|+.+.+ +..+|+.++.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999987 89999999999999999999888 789999999999999999999
Q ss_pred HHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 163 REYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMP------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 163 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999986 7999999999999999999999999999985 3899999999999999999999999999999
Q ss_pred HCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----
Q 046354 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---- 305 (510)
Q Consensus 233 ~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---- 305 (510)
+.|+.|+..+|+.+|.++.+ ......++..+...|+.|+..+++.++.+| ++.|++++|.++|+.|.+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~-----~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA-----GHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999998864 455667777788899999999999999999 999999999999999875
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSIL 760 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHHHHh----h-------------------CCHHHHHHHHHHHHh
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRL----H-------------------GDVRMADYIGERLIE 440 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~ 440 (510)
+.+|++.|++++|.+++++|.+. .||..+|+.++..|.+ . +..+.|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999764 8899999999876542 1 124679999999995
Q ss_pred cC--CCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQ--PSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.. |+ ..+|..++.++...+.++.+..+++.|.
T Consensus 841 ~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 841 AGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 43 44 4678888888888888888888888776
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.5e-51 Score=410.99 Aligned_cols=408 Identities=19% Similarity=0.210 Sum_probs=371.7
Q ss_pred CcccCCCChHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhH
Q 046354 2 SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA 77 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 77 (510)
.+|++.++++.|..++..|. .||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHH
Confidence 56889999999999999996 69999999999999999999999999999987 9999999999999999999999
Q ss_pred HHHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 046354 78 RKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151 (510)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~ 151 (510)
.++|++|. .|+..+|+.++.++++.|+.+.+.+++..+.+. .||..+++.++.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~--------------------- 267 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID--------------------- 267 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH---------------------
Confidence 99999994 488999999999999999999999999988876 667666665554
Q ss_pred HHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 046354 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKL 227 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~ 227 (510)
+|++.|++++|.++|+.|.++|..+|+.++.+|++.|++++|.++|++|.+ ||..||+.++.+|++.|++++|.++
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 556677888999999999999999999999999999999999999999954 8999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--
Q 046354 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-- 305 (510)
Q Consensus 228 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 305 (510)
+..|.+.|+.||..+++.++..+++............+ -..++..+|+.++..| ++.|+.++|.++|++|.+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y-----~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGY-----GNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999988765554444443332 2457899999999999 999999999999999875
Q ss_pred --CChhhHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 306 --KDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 306 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
||..||++++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~ 497 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMW 497 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHH
Confidence 8999999999999999999999999999986 699999999999999999999999999998876 788999999
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
++|+.+|...|+++.|..+++++.+..| +..+|..++..|.+.|++++|.+++++|.+..
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987878 46799999999999999999999999999543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-30 Score=273.25 Aligned_cols=460 Identities=15% Similarity=0.061 Sum_probs=381.2
Q ss_pred cccCCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ--P-DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~ 78 (510)
.+...|++++|.+.|+.+.+ | +...+..++..+.+.|++++|..+++.+....| +..++..+...+...|++++|.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 35678999999999998872 2 345667788889999999999999999987755 5678888999999999999999
Q ss_pred HHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+.|+++.+ .+...+..+...+...|++++|.+.|+++... +.+..++..+...+...|+.+.+
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999854 34567788889999999999999999999877 55677888888889899988887
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 215 (510)
+...+..++..+...|++++|.++++.+. +.+..+|..+..+|.+.|++++|...|+.+.+ .+...+..+...+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44567778899999999999999999987 55678899999999999999999999998765 4567788999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
.+.|++++|...++++.+.. +.+..++..+...+.. ..........+... .+.+...+..+...+ ...|+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~g~ 718 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLY-----LRQKD 718 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHH-----HHCCC
Confidence 99999999999999998743 2234444444444433 33333333333333 345666777778888 89999
Q ss_pred hhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 293 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
+++|...|+.+.. |+..++..++.++.+.|++++|...++.+.+.. +.+...+..+...+...|+.++|.++|+++.
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999998865 555778888999999999999999999998863 5667788888899999999999999999998
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
+. .++++.+++.++..+...|+ .+|...++++.+..| +...+..+...+...|++++|...++++++.+|.++.++
T Consensus 798 ~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 798 KK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred Hh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 74 45678888999999999999 889999999877666 566778888889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++.++.+.|++++|.+++++|.
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-29 Score=266.19 Aligned_cols=461 Identities=14% Similarity=0.087 Sum_probs=308.9
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+.+.|++++|...++.+. +.+...+..+...+.+.|++++|.++|+++.+..| +...+..+...+...|++++|.+
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Confidence 345566666666666654 23445556666666666666666666666655544 23344444445555555555555
Q ss_pred HHHhhcc-------------------------------------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCC
Q 046354 80 VFDEIYE-------------------------------------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKN 121 (510)
Q Consensus 80 ~~~~~~~-------------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~ 121 (510)
.++.+.+ ++..++..+...+...|++++|.+.|+++.+. +.+
T Consensus 419 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 498 (899)
T TIGR02917 419 DLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498 (899)
T ss_pred HHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Confidence 5544422 23345555556666666666666666665554 233
Q ss_pred hhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHH
Q 046354 122 VVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYV 185 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 185 (510)
...+..+...+...|+++.+ +...+..+...+.+.|+.++|...++++. +.+...+..++..|.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 44455555555555555554 34455556666666667777766666654 334455666667777
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh---hHH
Q 046354 186 DAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---MLA 259 (510)
Q Consensus 186 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~~ 259 (510)
+.|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+....+. ...
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776654 355667777777777777777777777776542 12223333333333222222 222
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
...... ..+.+...+..+...+ ...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+..
T Consensus 658 ~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 658 LKRALE-LKPDNTEAQIGLAQLL-----LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 222221 2234456667777777 788888888888887765 3455677788888888899999998888887
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHH
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVL 415 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 415 (510)
. .|+..++..+..++...|++++|.+.++.+.+. .+.++..+..++..|...|++++|.+.|+++.+..| +..++
T Consensus 732 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 732 R--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred h--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5 455577777888888889999999998888873 455777888888999999999999999998876655 66788
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRV 476 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 476 (510)
+.+...+...|+ .+|...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888899999999 789999999999999999889999999999999999999999888433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.7e-21 Score=207.63 Aligned_cols=462 Identities=16% Similarity=0.070 Sum_probs=257.6
Q ss_pred ccCCCChHHHHHHHhhcCC--CChhhH-----------------HHHHHHHHhcCChhhHHHHHHhccccCCChhHHHH-
Q 046354 4 FGCTGKVKEATKLFDEMSQ--PDPVSC-----------------ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA- 63 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~- 63 (510)
+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+.|++++|++.|+.+.+..|+......
T Consensus 72 ~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~ 151 (1157)
T PRK11447 72 LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVE 151 (1157)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHH
Confidence 4567778888888777762 332211 22334566778888888888887776554332211
Q ss_pred HH-HHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCCh----hhH----------
Q 046354 64 MI-DGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSW---------- 125 (510)
Q Consensus 64 li-~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~---------- 125 (510)
.. ......|+.++|.+.++++.+ | +...+..+...+...|+.++|+..|+++....+.. ..|
T Consensus 152 y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~ 231 (1157)
T PRK11447 152 YWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVS 231 (1157)
T ss_pred HHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCC
Confidence 11 112234778888888888754 3 44567778888888888888888888875431110 000
Q ss_pred -------HH----------------------------------HHHHHHhcCCcchh-------------hHHHHHHHHH
Q 046354 126 -------TT----------------------------------VVLGCAHNGLIAKL-------------EVISWTTMCT 151 (510)
Q Consensus 126 -------~~----------------------------------ll~~~~~~~~~~~a-------------~~~~~~~l~~ 151 (510)
.. ....+...|+++.| +...+..+..
T Consensus 232 ~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~ 311 (1157)
T PRK11447 232 DASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ 311 (1157)
T ss_pred hhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 00 01112233333333 3344444445
Q ss_pred HHHhcCchHHHHHHHhhCC--CCCh---hHH------------HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP--NKDI---VAW------------NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAM 211 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~--~~~~---~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 211 (510)
.+.+.|++++|.+.|++.. .|+. ..+ ......+.+.|++++|...|+++.+ .+...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555554443 1111 001 0112234445555555555554443 223344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHhhhhhhhhHHHHHHHHhC-----------CCcchhhhhhhh
Q 046354 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNE-TTCTSILTSCEGMLENMLAHALAIRLG-----------FEQETSLTYKCT 279 (510)
Q Consensus 212 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~ 279 (510)
...+...|++++|++.|+++.+. .|+. ..+..+...+... ............. .......+..+.
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555666666666666665542 2221 1111111111100 0000000000000 000011222334
Q ss_pred hhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
..+ ...|++++|...|++..+ | +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus 469 ~~~-----~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 469 EAL-----ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 445 678889999998888765 3 44567778888889999999999998887642 22222222222233344
Q ss_pred CcHHHHHHHHHHHHHh-------------------------------------h-CCCCCcchhHhHHhHHhhcCChHHH
Q 046354 357 GLVEKGRKTFNLMSRA-------------------------------------Y-GFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~-------------------------------------~-~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
++.++|...++.+... . ..++++..+..+...+.+.|++++|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 4445444444332110 0 1234555666777778888888888
Q ss_pred HHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 399 MRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 399 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..|++..+..| +...+..++..+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++++..
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 888887776666 5667777788888888888888888888777787777777788888888888888888887763
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.3e-21 Score=208.55 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...++++.+.. |+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~------------- 528 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PND------------- 528 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-------------
Confidence 34455666677777777777777654 3 34556667777777777777777777765522 221
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC----Ch---------hhHHHHHHHHHh
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK----DV---------VSWTAMILAYSN 320 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~ 320 (510)
+.....+...+ ...++.++|...++.+... +. ..+..+...+..
T Consensus 529 ------------------~~~~~a~al~l-----~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 529 ------------------PEQVYAYGLYL-----SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred ------------------HHHHHHHHHHH-----HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111122222 6678888888888887642 11 112345667888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
.|+.++|..+++. .+++...+..+...+...|+.++|...|+.+.+. -+.++..+..++..|...|++++|.+
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 3556667778888899999999999999999974 34467888999999999999999999
Q ss_pred HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 401 VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG------AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 401 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++...+..| +...+..+..++...|++++|.+++++++...|+++. .+..++.++...|++++|+..|++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887766 4556777888888999999999999999987766543 46667899999999999999999887
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-22 Score=183.47 Aligned_cols=412 Identities=14% Similarity=0.139 Sum_probs=236.0
Q ss_pred CCCChHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHH
Q 046354 6 CTGKVKEATKLFDEMSQ--PD-PVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVF 81 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~ 81 (510)
+.|++++|++-....-. |+ ......+-..+.+..+.+.....-....+..| -..+|+.+...+-..|++++|...+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 45666666655544431 21 11112222334444455544443333333333 4566777777777777777777777
Q ss_pred Hhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCc
Q 046354 82 DEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158 (510)
Q Consensus 82 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 158 (510)
+.+++ | .+..|..+..++...|+.+.|.+.|.+..+..|+..-.. ..+...+...|+
T Consensus 140 ~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~--------------------s~lgnLlka~Gr 199 (966)
T KOG4626|consen 140 RAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCAR--------------------SDLGNLLKAEGR 199 (966)
T ss_pred HHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhh--------------------cchhHHHHhhcc
Confidence 77754 2 345677777777777777777777777666544432211 112233344566
Q ss_pred hHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 159 TKLAREYFVQMP--NKD-IVAWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 159 ~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
..+|...+.+.. +|. ...|+.|...+-..|+...|++.|++..+ |+ ...|-.|...|...+.+++|...|.+..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 666666666655 333 34566666677777777777777776665 32 3456666666777777777776666654
Q ss_pred HCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CC-hh
Q 046354 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KD-VV 309 (510)
Q Consensus 233 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~ 309 (510)
. ..|+ ...++..+...| -.+|.++.|+..+++..+ |+ ..
T Consensus 280 ~--lrpn-------------------------------~A~a~gNla~iY-----yeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 280 N--LRPN-------------------------------HAVAHGNLACIY-----YEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred h--cCCc-------------------------------chhhccceEEEE-----eccccHHHHHHHHHHHHhcCCCchH
Confidence 4 2222 223333444444 566666666666666554 22 34
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLAD 387 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 387 (510)
.|+.|..++-..|++.+|...|+..... .|+ ....+.|...+...|.+++|..+|..... +.| -...++.|..
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLAS 396 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHH
Confidence 6666666666666666666666666553 333 23556666666666666666666666553 233 2445566666
Q ss_pred HHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
.|-.+|++++|+..+++.....|+ ...++.+...|...|+...|.+.+.+++..+|.-..++..|+.+|...|+..+|+
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 666666666666666666655553 3366666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhcccc
Q 046354 467 QVRKKMERRVKKVA 480 (510)
Q Consensus 467 ~~~~~~~~~~~~~p 480 (510)
.-|+...+-.+..|
T Consensus 477 ~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 477 QSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHccCCCCc
Confidence 66665543333333
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.6e-20 Score=188.24 Aligned_cols=403 Identities=12% Similarity=0.022 Sum_probs=252.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKAR 103 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 103 (510)
.+......+.+.|++++|+..|++.....|+...|..+..+|...|++++|.+.++..++ | +..+|..+..+|...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 344556667777777777777777777777777777777777777777777777777754 2 3346666777777777
Q ss_pred ChHHHHHHHHhccccCC-ChhhHHHHHHHHHhc-----------CCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-
Q 046354 104 QVDEGRRLFDRMPLKLK-NVVSWTTVVLGCAHN-----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP- 170 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 170 (510)
++++|+.-|.......+ +......++...... .... +...+..+.. +......+....-+....
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 77777766655433211 111111111100000 0000 0000001111 111111111111111111
Q ss_pred -CCC-hhHHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046354 171 -NKD-IVAWNAMITA---YVDAGNMAQASELFNLMPQ-----R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239 (510)
Q Consensus 171 -~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 239 (510)
.+. ...+..+... ....+++++|.+.|+...+ | +...|+.+...+...|++++|+..+++..+. .|+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 111 1111111111 1234677788877776653 2 3455777777777888888888888887653 333
Q ss_pred HhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHH
Q 046354 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMIL 316 (510)
Q Consensus 240 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 316 (510)
.. ..+..+...+ ...|++++|...|++..+ .+...|..+..
T Consensus 364 ~~-------------------------------~~~~~la~~~-----~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 364 VT-------------------------------QSYIKRASMN-----LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred cH-------------------------------HHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 21 1122222233 667778888887776654 34567888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChH
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (510)
.+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+. .+.++..++.+..++...|+++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 8999999999999999988753 334556777778888999999999999998863 3446788888999999999999
Q ss_pred HHHHHHhhCCCCCCcH-HH-------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 397 EAMRVVSKMPPHERDH-VV-------LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 397 ~A~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+|.+.|++.....|+. .. ++..+..+...|++++|...++++++++|++...+..++.++...|++++|+++
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999877665531 11 111222334468999999999999999999888899999999999999999999
Q ss_pred HHHHH
Q 046354 469 RKKME 473 (510)
Q Consensus 469 ~~~~~ 473 (510)
|++..
T Consensus 565 ~e~A~ 569 (615)
T TIGR00990 565 FERAA 569 (615)
T ss_pred HHHHH
Confidence 98876
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.7e-19 Score=184.05 Aligned_cols=459 Identities=14% Similarity=0.066 Sum_probs=260.1
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
..|++++|...|+... +.++.++..|...|.+.|++++|+..+++..+..|+...|..++..+ +++++|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 3588888888888886 23566778888888888888888888888888777555554444222 77777777777
Q ss_pred hhcc--CC-hhhHHH----------------------------------------HHHHHHcCCChHHHHHHHHhccccC
Q 046354 83 EIYE--GN-VYSWTS----------------------------------------LISGYFKARQVDEGRRLFDRMPLKL 119 (510)
Q Consensus 83 ~~~~--~~-~~~~~~----------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~ 119 (510)
++.+ |+ ..++.. +.+.|.+.|++++|++++.++.+..
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 7733 21 222222 2455555666666666666666653
Q ss_pred CChh-hHHHHHHHHHhc-CCcchh----------hHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCChhHH-----
Q 046354 120 KNVV-SWTTVVLGCAHN-GLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMP-----NKDIVAW----- 177 (510)
Q Consensus 120 ~~~~-~~~~ll~~~~~~-~~~~~a----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~----- 177 (510)
|... -...+..+|... ++ +.+ ++.....++..+.+.|+.++|.++++++. .|+..++
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 3222 233333344431 22 111 44555566666677777777777766665 1221111
Q ss_pred -------------------------HHHHHHHHhcCCHHHHHHHHhhCCC------------------------------
Q 046354 178 -------------------------NAMITAYVDAGNMAQASELFNLMPQ------------------------------ 202 (510)
Q Consensus 178 -------------------------~~li~~~~~~g~~~~A~~~~~~~~~------------------------------ 202 (510)
-.++..+.+.++++-+.++...-+.
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~ 371 (987)
T PRK09782 292 KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ 371 (987)
T ss_pred hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc
Confidence 1113444555555555444321110
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHhhhhhh---hhHH----------------
Q 046354 203 --RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-R-FMPNETTCTSILTSCEGMLE---NMLA---------------- 259 (510)
Q Consensus 203 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~---~~~~---------------- 259 (510)
.+......+.....+.|+.++|.++++..... + ..++......++..+..-.. ...+
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 01122222333345667788888888777652 1 12222222223322111000 0000
Q ss_pred ---------HHHH-HHhCC-Cc--chhhhhhhhhhc---------------------------cccccccccChhhHHHH
Q 046354 260 ---------HALA-IRLGF-EQ--ETSLTYKCTCHY---------------------------VFWDWGFQLDVNSARLA 299 (510)
Q Consensus 260 ---------~~~~-~~~~~-~~--~~~~~~~l~~~~---------------------------~~~~~~~~~~~~~a~~~ 299 (510)
.... ...+. ++ +...+..+..++ +.......|++++|...
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000 00011 11 222222222222 00000356666666666
Q ss_pred hcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 300 FERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 300 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
|+++.. ++...+..+..++.+.|++++|...+++..+.+ |+. ..+..+.......|++++|...+++..+. .
T Consensus 532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~ 606 (987)
T PRK09782 532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---A 606 (987)
T ss_pred HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 665543 233345555566666777777777777766643 332 22222333334557777787777777753 5
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
|+...+..+..++.+.|++++|...+++..+..| +...+..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6677777778888888888888888888877777 455667777778888888888888888888888888888888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 046354 456 HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~ 473 (510)
+...|++++|+..+++..
T Consensus 687 l~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 687 NQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888888888888665
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-21 Score=177.22 Aligned_cols=379 Identities=15% Similarity=0.163 Sum_probs=314.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHH-HHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWT-SLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~li~~~ 99 (510)
-..+|+.+...+-..|++++|+..++.+.+..| ....|..+..++...|+.+.|.+.|...++ |+..... .+-..+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 357899999999999999999999999999888 567899999999999999999999999966 4444333 344455
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC--CC-hhH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN--KD-IVA 176 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~ 176 (510)
-..|++++|...|.+..+..|.- ..+|..+...+...|+...|++-|++..+ |+ ...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~f--------------------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCF--------------------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCce--------------------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 56899999999999888865532 23444555566778888999999999883 33 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
|-.|...|...+.+++|...|.+... | ....+..+...|...|..|-|+..|++..+. .|+
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~-------------- 318 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN-------------- 318 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC--------------
Confidence 88899999999999999999987765 4 4577888888999999999999999998763 232
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
-+..++.+.+++ -..|++.+|.+.+.+... ....+.+.|...|...|.++.|..+
T Consensus 319 -----------------F~~Ay~NlanAL-----kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 319 -----------------FPDAYNNLANAL-----KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred -----------------chHHHhHHHHHH-----HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 334455555555 778999999999998876 3456788999999999999999999
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 331 FARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 331 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
|....+ +.|.. ...+.|...|-+.|+.++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+....
T Consensus 377 y~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 377 YLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 998887 45654 478889999999999999999999998 56786 568899999999999999999999999877
Q ss_pred CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 409 ERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 409 ~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
.|. ....+.|.+.|...|+..+|++.|+..+++.|+.+.+|-.++-++.--.+|.+=
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 884 558899999999999999999999999999999999999998887777777663
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=3.5e-19 Score=181.80 Aligned_cols=453 Identities=9% Similarity=0.018 Sum_probs=317.2
Q ss_pred ccCCCChHHHHHHHhhcCCCC--hhhHH-HHHHHHHhcCChhhHHHHHHhccccCCChhH-HHHHHHHHHh-cCChhhHH
Q 046354 4 FGCTGKVKEATKLFDEMSQPD--PVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVA-ESAMIDGYVK-AGRVDEAR 78 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~li~~~~~-~~~~~~A~ 78 (510)
|.+.+...++++ .....|+ +.... .+.+.|.+.|++++|++.+.++.+.+|.... ...|..+|.. .++ +.+.
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHH
Confidence 444445555555 2233444 44334 4488999999999999999999998775444 6667778887 467 8888
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHH----------------------
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCA---------------------- 133 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~---------------------- 133 (510)
.+++...+.+...+..+...|.+.|+.++|.++++++... .|+..+|.-++.-+.
T Consensus 237 al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~ 316 (987)
T PRK09782 237 ALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVV 316 (987)
T ss_pred HHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHH
Confidence 8887766678899999999999999999999999999876 344444443332221
Q ss_pred --------hcCCcchh------------------------------------------hHHHHHHHHHHHHhcCchHHHH
Q 046354 134 --------HNGLIAKL------------------------------------------EVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 134 --------~~~~~~~a------------------------------------------~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
..+.++.+ +......+.-.....|+.++|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 317 GATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 11211111 2222223333345567777777
Q ss_pred HHHhhCCC--C----ChhHHHHHHHHHHhcCC---HHHHHHHHh-------------------------hCCC---C--C
Q 046354 164 EYFVQMPN--K----DIVAWNAMITAYVDAGN---MAQASELFN-------------------------LMPQ---R--N 204 (510)
Q Consensus 164 ~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~~~-------------------------~~~~---~--~ 204 (510)
++++...+ + +......++..|.+.+. ..++..+-. .... + +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 77777662 1 12233466677777665 333333311 1111 2 4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh---hhhhhhhHHHHHHHHhCCCcchhhhhhhhhh
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCH 281 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (510)
...|..+..++.. +++++|...+.+.... .|+......+...+ .+..........+ ...++....+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka--~~~~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKI--SLHDMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHH--hccCCCcHHHHHHHHH
Confidence 5667777777766 7888899977777663 35544322222221 2222222222222 2223444445566666
Q ss_pred ccccccccccChhhHHHHhcccCCCChhhHHH---HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc
Q 046354 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTA---MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 358 (510)
+ ...|+.++|...+++..+.++...+. +.....+.|++++|...+++..+. .|+...+..+...+.+.|+
T Consensus 552 l-----l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 552 A-----QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred H-----HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 6 88999999999999887744333333 333444559999999999999974 5778889999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
.++|...+++.... .+.++..+..+..++...|++++|+..+++..+..| +...+..+..++...|++++|+..+++
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999874 344677888899999999999999999999987778 667899999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++.|++.......++...+..+++.|.+-+++.-
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887544
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.2e-19 Score=180.48 Aligned_cols=399 Identities=10% Similarity=-0.014 Sum_probs=291.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 99 (510)
++....-.+......|+.++|++++.......| +...+..+..++...|++++|..+++...+ | +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333344456667789999999999999886434 555788888999999999999999999744 3 456677888888
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVA 176 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~ 176 (510)
...|++++|...+++..+..|+... +..+..++...|+.++|...++++. +.+...
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~---------------------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN---------------------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH---------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998886554321 3334556677788888888888887 345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hhHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ-RNV------WTWNAMIDRYAR-----NGPE---GAAMKLLNLMFQS-RFMPNE 240 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~-----~~~~---~~A~~~~~~m~~~-g~~p~~ 240 (510)
+..+..++...|..++|++.++.... |+. .....++..... .+++ ++|+..++.+.+. ...|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 67778888888999999999988776 221 112222222221 2233 6778888887653 222322
Q ss_pred hh-HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC---h-hhHHHHH
Q 046354 241 TT-CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD---V-VSWTAMI 315 (510)
Q Consensus 241 ~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~l~ 315 (510)
.. +.... ...+..+ ...|+.++|+..|+++.+.+ + ..-..+.
T Consensus 233 ~~~~~~a~----------------------------~d~l~~L-----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la 279 (765)
T PRK10049 233 TADYQRAR----------------------------IDRLGAL-----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVA 279 (765)
T ss_pred chHHHHHH----------------------------HHHHHHH-----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 11 11000 0001111 45689999999999988732 1 1223357
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCc-----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC------------CC
Q 046354 316 LAYSNHGHGFQVFRLFARMLKSGTKPDE-----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK------------PR 378 (510)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~ 378 (510)
.+|...|++++|+..|+++... .|.. .....+..++...|++++|.++++.+... .+ |+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCC
Confidence 7899999999999999998764 2322 34566677788999999999999999864 22 12
Q ss_pred ---cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 ---AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..++..+...|++++|++.++++....| +...+..+...+...|++++|++.++++++..|+++..+..++.
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 12345677888999999999999999987777 66788889999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 455 VHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+...|++++|+.+++.+.+..+..|
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999985555544
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.5e-20 Score=175.23 Aligned_cols=292 Identities=13% Similarity=0.079 Sum_probs=234.0
Q ss_pred HHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhcC
Q 046354 150 CTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-RN------VWTWNAMIDRYARNG 219 (510)
Q Consensus 150 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~~ 219 (510)
...+...|+++.|.+.|+++. +.+..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344567789999999999998 34556888999999999999999999998876 22 256788899999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHH
Q 046354 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299 (510)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 299 (510)
++++|..+|+++.+.. +++..++..+ +..+ .+.|++++|.+.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~l--------------------------------a~~~-----~~~g~~~~A~~~ 163 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQL--------------------------------LEIY-----QQEKDWQKAIDV 163 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHH--------------------------------HHHH-----HHhchHHHHHHH
Confidence 9999999999997642 1223333333 3344 888999999999
Q ss_pred hcccCCCC--------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 300 FERLEAKD--------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 300 ~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
++.+.+.+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99886521 1245667778889999999999999998753 33455777888899999999999999999986
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
. +-.....++..++.+|.+.|++++|...++++.+..|+...+..++..+.+.|++++|..+++++++..|+++ .+..
T Consensus 243 ~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~ 320 (389)
T PRK11788 243 Q-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHR 320 (389)
T ss_pred H-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHH
Confidence 4 2122245678899999999999999999999987788888788889999999999999999999999999875 4555
Q ss_pred HHHHHHH---cCCChHHHHHHHHHH-Hhhccccce
Q 046354 452 SANVHAA---RGEWDEFAQVRKKME-RRVKKVASF 482 (510)
Q Consensus 452 l~~~~~~---~g~~~~A~~~~~~~~-~~~~~~p~~ 482 (510)
+...+.. .|+.+++..++++|. +++...|..
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5555443 569999999999999 888888875
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1e-18 Score=174.51 Aligned_cols=254 Identities=12% Similarity=-0.021 Sum_probs=158.9
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~ 225 (510)
.+...|++++|.+.++++. +.+...+..+..++...|++++|...++.+.. |+ ...+..+ ..+...|++++|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 3334444444444444443 22344555566666666666666666654432 22 2222222 2355566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
..++.+.+....++......+. ..+ ...|++++|...|++...
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~--------------------------------~~l-----~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAV--------------------------------DTL-----CAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHH--------------------------------HHH-----HHCCCHHHHHHHHHHHHh
Confidence 6666654432212211111111 111 455666666666665544
Q ss_pred ---CChhhHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC
Q 046354 306 ---KDVVSWTAMILAYSNHGHGFQ----VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 306 ---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (510)
.+...+..+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~ 317 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDL 317 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 234566777888888888875 788888888742 334457778888888889999999999888864 2334
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV-LGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+..+..+..++.+.|++++|...++++.+..|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 566777888888899999999999888877776544 33355677888999999999999988888764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.6e-18 Score=173.10 Aligned_cols=277 Identities=12% Similarity=-0.028 Sum_probs=219.3
Q ss_pred cCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 156 NAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
.|+++.|.+.++++. +.+...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 344444444444443 23456778888999999999999999999876 3 56788899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---
Q 046354 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--- 306 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 306 (510)
.+......+....+. + . .+ ...|++++|...++.+.+.
T Consensus 169 ~~~~~~P~~~~a~~~-~-~--------------------------------~l-----~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 169 TQAQEVPPRGDMIAT-C-L--------------------------------SF-----LNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCCHHHHHH-H-H--------------------------------HH-----HHcCCHHHHHHHHHHHHhcCCC
Confidence 886643322221111 1 1 12 6789999999999887652
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH----HHHHHHHHHHhhCCCCCcch
Q 046354 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK----GRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 307 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~ 381 (510)
+...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++++.+. .+.+...
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a 286 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRI 286 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHH
Confidence 23344556678899999999999999999863 4455677788888999999885 89999999864 3446778
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..+...+.+.|++++|...+++.....| +...+..+...+...|++++|...|+++.+..|+++..+..++.++...|
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 88999999999999999999999987777 45577788889999999999999999999999998777777888999999
Q ss_pred CChHHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKMER 474 (510)
Q Consensus 461 ~~~~A~~~~~~~~~ 474 (510)
++++|+..|++..+
T Consensus 367 ~~deA~~~l~~al~ 380 (656)
T PRK15174 367 KTSEAESVFEHYIQ 380 (656)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998773
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=5.5e-18 Score=172.98 Aligned_cols=385 Identities=9% Similarity=0.006 Sum_probs=285.4
Q ss_pred cccCCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~ 78 (510)
+....|+.++|++++....+ .+...+..+...+...|++++|..+|++..+..|+ ...+..+..++...|++++|.
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34568999999999999873 34456899999999999999999999999888674 666778889999999999999
Q ss_pred HHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Q 046354 79 KVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155 (510)
Q Consensus 79 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~ 155 (510)
..++++.+ | +.. +..+...+...|+.++|...++++.+..|+... .+..+...+..
T Consensus 104 ~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~--------------------~~~~la~~l~~ 162 (765)
T PRK10049 104 VKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ--------------------YPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHH
Confidence 99999955 3 445 888888999999999999999999997665422 22223445556
Q ss_pred cCchHHHHHHHhhCCC-CCh------hHHHHHHHHHHh-----cCCH---HHHHHHHhhCCC-----CChhh-H----HH
Q 046354 156 NAMTKLAREYFVQMPN-KDI------VAWNAMITAYVD-----AGNM---AQASELFNLMPQ-----RNVWT-W----NA 210 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~~-~~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~~~~-----~~~~~-~----~~ 210 (510)
.+..+.|.+.++.... |+. ......+..... .+++ ++|+..++.+.+ |+... + ..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 6777888888877663 221 012222222221 2234 677777776653 22211 1 11
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
.+..+...|++++|+..|+.+...+.. |+..... +...| ..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---------------------------------la~~y-----l~ 284 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---------------------------------VASAY-----LK 284 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---------------------------------HHHHH-----Hh
Confidence 133456779999999999999876532 3221111 11223 77
Q ss_pred ccChhhHHHHhcccCCCC-------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCCc---hhHHH
Q 046354 290 QLDVNSARLAFERLEAKD-------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-----------KPDE---ITFVG 348 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ 348 (510)
.|++++|+..|+++.+.+ ...+..+..++...|++++|..+++.+..... .|+. ..+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 899999999999876522 23455667788999999999999999987520 1232 23445
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGD 427 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 427 (510)
+...+...|+.++|.+.++++... .+.++..+..++..+...|++++|++.+++..+..|+ ...+..++..+...|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 667788899999999999999874 4557888899999999999999999999999988885 5677777788899999
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 046354 428 VRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~ 448 (510)
+++|+.+++++++..|+++.+
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999744
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=9.1e-19 Score=166.85 Aligned_cols=230 Identities=13% Similarity=0.061 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
..+..++..|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++......
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------ 181 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH------ 181 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH------
Confidence 3566777778888888888888887765 4566778888888888888888888888876543322111000
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHH
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+..+...+ ...|++++|...|+++.+ | +...+..+...|.+.|++++|.
T Consensus 182 ----------------------~~~~la~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 182 ----------------------FYCELAQQA-----LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred ----------------------HHHHHHHHH-----HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 111222333 667888888888887764 2 3457778889999999999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
++++++.+.+......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999987532222456788899999999999999999999864 577777788999999999999999999998878
Q ss_pred CCcHHHHHHHHHHHHh---hCCHHHHHHHHHHHHh
Q 046354 409 ERDHVVLGALLGACRL---HGDVRMADYIGERLIE 440 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 440 (510)
.|+...++.++..+.. .|+..++..+++++++
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8999999988887664 5688899999998883
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.3e-17 Score=164.09 Aligned_cols=425 Identities=12% Similarity=0.014 Sum_probs=304.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCCh--hHHHHHHHHHHhcCChhhHHHHHHhhccCChh-hHHHH--HHHHHcC
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMIDGYVKAGRVDEARKVFDEIYEGNVY-SWTSL--ISGYFKA 102 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~ 102 (510)
|...| ...+.|+++.|+..|++..+..|+. ..+ .++..+...|+.++|+..+++...|+.. .+..+ ...+...
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 44444 3569999999999999999988875 244 8888899999999999999999876443 33344 5578888
Q ss_pred CChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHH
Q 046354 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAM 180 (510)
Q Consensus 103 g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l 180 (510)
|++++|+++|+++.+..|+.. ..+..++..+...++.++|.+.++++. .|+...+..+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~--------------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNP--------------------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCH--------------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 999999999999999755532 222334566777889999999999988 4554555444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH------HHHHHHh-
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC------TSILTSC- 250 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~- 250 (510)
+..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+++.++-.+. +.|...-. ...+...
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcc
Confidence 4444446666669999998876 4 5667788888999999988888776653211 11111111 1111100
Q ss_pred -h------hhhhhhHHHHH----HHHhCC-Ccchhh-hh---hhhhhccccccccccChhhHHHHhcccCCC----Chhh
Q 046354 251 -E------GMLENMLAHAL----AIRLGF-EQETSL-TY---KCTCHYVFWDWGFQLDVNSARLAFERLEAK----DVVS 310 (510)
Q Consensus 251 -~------~~~~~~~~~~~----~~~~~~-~~~~~~-~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 310 (510)
. +.......... ....+. ++.... .. -.+.++ ...|+..++++.|+.+..+ ...+
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL-----~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL-----LVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0 00000111111 111121 221111 22 223334 7889999999999999863 3346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhC----------C
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSG-----TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG----------F 375 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~ 375 (510)
-..+.++|...+++++|+.+|+.+.... .+++......|.-++...+++++|..+++.+.+... -
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 6778999999999999999999997643 122333357789999999999999999999987311 0
Q ss_pred CCCc---chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 376 KPRA---EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 376 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.|++ ..+..++..+.-.|++.+|++.++++....| |......+...+...|.+.+|++.++.+..++|++..+...
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 1222 2234567778899999999999999987777 78889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 452 SANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+.++...|+|.+|..+.+.+....|..|
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999877754344333
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=9.2e-17 Score=161.17 Aligned_cols=373 Identities=8% Similarity=-0.080 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC-ChhhHHHHHHHHHhcC
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGCAHNG 136 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~ 136 (510)
.+......+.+.|++++|...|++.++ |+...|..+..+|.+.|++++|++.+++..+..| +...|..+..++...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 355677888999999999999999854 7778899999999999999999999999998744 4445666666666666
Q ss_pred CcchhhHHHHH-------------HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046354 137 LIAKLEVISWT-------------TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203 (510)
Q Consensus 137 ~~~~a~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 203 (510)
+++++-...-. .++.-+........+...++.- +++...+..+.. |....+......-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 65554110000 0000000000011111111111 111112221111 11111111111111111110
Q ss_pred Ch---hhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhh
Q 046354 204 NV---WTWNAMIDR---YARNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276 (510)
Q Consensus 204 ~~---~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (510)
+. ..+..+... ....+++++|.+.|++..+.+ ..|+.. ..+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a-------------------------------~a~~ 335 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA-------------------------------IALN 335 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH-------------------------------HHHH
Confidence 10 111111111 122467888888888877654 223221 2233
Q ss_pred hhhhhccccccccccChhhHHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc
Q 046354 277 KCTCHYVFWDWGFQLDVNSARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353 (510)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 353 (510)
.+...+ ...|++++|...|++... |+ ...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 336 ~lg~~~-----~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 336 LRGTFK-----CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333444 778999999999998876 33 4578888899999999999999999998753 44567888888899
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...|++++|...|++..+. .+.+...+..+..++.+.|++++|+..+++..+..| +...++.+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999863 334567778889999999999999999999887767 5678899999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHH-------HHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVL-------SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|++++++.|.....+.. ....+...|++++|.+++++..
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999875443221 1223444799999999999765
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.1e-15 Score=151.30 Aligned_cols=415 Identities=8% Similarity=0.014 Sum_probs=292.0
Q ss_pred ccCCCChHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhhHHHHHHhccccCCChh-HHHH--HHHHHHhcCChhhH
Q 046354 4 FGCTGKVKEATKLFDEMSQ--PDPV-SCASMITVFLRNHDLPKAEALFRAMPESQRNIV-AESA--MIDGYVKAGRVDEA 77 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~--li~~~~~~~~~~~A 77 (510)
..+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+.. .+.. +...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999984 4431 223888888899999999999999994 5333 3333 35688888999999
Q ss_pred HHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 046354 78 RKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154 (510)
Q Consensus 78 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~ 154 (510)
.++++++.+ | +...+..++..+...++.++|++.++++....|+...+ +..++.. .
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~-------------------~ 180 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLN-------------------R 180 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHH-------------------H
Confidence 999999965 3 45667788889999999999999999999876664444 2223322 2
Q ss_pred hcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhH------HHHHHHH-----Hh
Q 046354 155 RNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTW------NAMIDRY-----AR 217 (510)
Q Consensus 155 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~li~~~-----~~ 217 (510)
..++..+|++.++++. +.+...+..++.+..+.|-...|.++..+-+. +....+ ..++..- ..
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 2344444777777776 33566677778888888888888877776554 111000 1111100 01
Q ss_pred cCCh---HHHHHHHHHHHH-CCCCCCH-hhHHH-H---HHHh---hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 218 NGPE---GAAMKLLNLMFQ-SRFMPNE-TTCTS-I---LTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 218 ~~~~---~~A~~~~~~m~~-~g~~p~~-~~~~~-l---l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
..++ +.|+.-++.+.. .+..|.. ..|.. . +.++ ....+....+..+...+.+....+-..+..+|
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday--- 337 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY--- 337 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH---
Confidence 1222 334444555443 1222322 22211 1 1122 23333344444445555566667778888888
Q ss_pred ccccccChhhHHHHhcccCCC---------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCCc--
Q 046354 286 DWGFQLDVNSARLAFERLEAK---------DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-----------KPDE-- 343 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~-- 343 (510)
...++.++|..+|..+..+ +......|.-+|...+++++|..+++.+.+.-. .||.
T Consensus 338 --l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 338 --IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred --HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 9999999999999988552 222356788999999999999999999997311 1222
Q ss_pred -hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH
Q 046354 344 -ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA 421 (510)
Q Consensus 344 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 421 (510)
..+..++..+...|+..+|++.++++.. .-|-|..+...+.+.+...|.+.+|++.++......| +..+....+.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 1234456778889999999999999976 4556899999999999999999999999988877778 55577788888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
+...|++.+|..+.+.+.+..|+++..
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999999999744
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-15 Score=145.98 Aligned_cols=416 Identities=12% Similarity=0.026 Sum_probs=238.8
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhccCC------hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh--hHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN------VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV--SWTTV 128 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~l 128 (510)
++...+.|...|.-.|++..+..+...+...+ ...|-.+.++|-..|++++|...|.+..+..+|.. .+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 44555555555555566666666555554322 12355555666666666666666655555433332 23334
Q ss_pred HHHHHhcCCcchh-------------hHHHHHHHHHHHHhcC----chHHHHHHHhhCC---CCChhHHHHHHHHHHhcC
Q 046354 129 VLGCAHNGLIAKL-------------EVISWTTMCTGLERNA----MTKLAREYFVQMP---NKDIVAWNAMITAYVDAG 188 (510)
Q Consensus 129 l~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 188 (510)
...+...|+.+.+ ...+...+...|...+ ..+.|..++.+.. +.|...|-.+...+-..+
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 4445555555444 2333333333333332 3344444444444 223334444433333222
Q ss_pred CHHHHHHHHhhCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHh-----hHHHHHHHh--
Q 046354 189 NMAQASELFNLMP--------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS---RFMPNET-----TCTSILTSC-- 250 (510)
Q Consensus 189 ~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~-----~~~~ll~~~-- 250 (510)
- ..++.+|.... ...+...|.+...+...|++++|...|...... ...+|.. |..--+..+
T Consensus 429 ~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 P-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred h-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 2 11133332221 245566777888888888888888888887665 2333332 111112211
Q ss_pred --hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh
Q 046354 251 --EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 251 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 325 (510)
+........+..+.+.. +.-...+-.++.+. ...+...+|...++.+.. .++..|+.+...|.....+.
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma-----~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMA-----RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHH-----HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 12222222222222211 12222233333333 445677788888887765 56677777777888888888
Q ss_pred hHHHHHHHHHHc-CCCCCchhHHHHHHhcC------------cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 326 QVFRLFARMLKS-GTKPDEITFVGVLSDCS------------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 326 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
.|.+-|....+. ...+|..+...|.+.|. ..+..+.|+++|.++.+ .-+-|...-|-+.-+++..
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 888766665543 12345555555544332 12345677777777776 3344777778888888999
Q ss_pred CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-C-CCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 393 GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL-Q-PSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
|++.+|..+|.+..+... ...+|..+..+|...|++..|+++|+...+. . .+++.....|+.++.+.|++.+|.+.+
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999988875433 5678888999999999999999999988833 3 345566888999999999999998888
Q ss_pred HHHHHhhccccc
Q 046354 470 KKMERRVKKVAS 481 (510)
Q Consensus 470 ~~~~~~~~~~p~ 481 (510)
.......+..|.
T Consensus 740 l~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 740 LKARHLAPSNTS 751 (1018)
T ss_pred HHHHHhCCccch
Confidence 766644444443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.7e-15 Score=144.44 Aligned_cols=441 Identities=16% Similarity=0.110 Sum_probs=312.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccC----CChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CC--hhhHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----RNIVAESAMIDGYVKAGRVDEARKVFDEIYE--GN--VYSWTS 94 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~ 94 (510)
.|+...+.|.+-|...|+++.++.+...+.... --...|--+.++|-..|++++|...|....+ ++ +..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 467777888888888899999998888887652 1234566788999999999999999988865 33 345567
Q ss_pred HHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCC----cchh-------------hHHHHHHHHHHHHhc
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGL----IAKL-------------EVISWTTMCTGLERN 156 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~----~~~a-------------~~~~~~~l~~~~~~~ 156 (510)
|...+++.|+++.+...|+.+.+. +.+..|...+...|+..+. .+.+ +...|-.+...+...
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 889999999999999999999887 4456666666666766641 1222 666777777777655
Q ss_pred CchH------HHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCh------hhHHHHHHHHH
Q 046354 157 AMTK------LAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-------RNV------WTWNAMIDRYA 216 (510)
Q Consensus 157 ~~~~------~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~ 216 (510)
.-+. .|..++.... ++.+...|.+...+...|++.+|...|..... ++. .+-..+...+-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 4433 3443333322 67788999999999999999999999987653 222 22334566677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhh-HHHHHH--HHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
..++++.|.+.|..+... .|+-...-.-+.+........ .....+ .-.....++.++..+.+.+ .+...+
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-----l~k~~~ 580 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH-----LKKSEW 580 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-----Hhhhhh
Confidence 788999999999999773 344333222222111110100 111111 1233455667777777777 777777
Q ss_pred hhHHHHhcccCC-----CChhhHHHHHHHHHh------------cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 294 NSARLAFERLEA-----KDVVSWTAMILAYSN------------HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 294 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
..|..-|..+.+ +|+.+.-.|...|.+ .+..++|+++|.+..... +-|...-+.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 777775554443 344444444444432 245678999999888753 56667777888888999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCcHHHHHHHHHHHHhhCCHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
|++..|..+|....+. ......+|-.+..+|..+|++-.|+++|+...+. ..+....+.|..++...|.+.+|.+
T Consensus 660 g~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred cCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999885 3346678889999999999999999999987643 4478889999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHH-------------------cCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAA-------------------RGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~~~ 473 (510)
.+..++...|.++.....++.+..+ .+..+.|.++|..|.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998886666655333 335667778888777
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=8.2e-16 Score=135.75 Aligned_cols=417 Identities=12% Similarity=0.052 Sum_probs=276.0
Q ss_pred cccCCCChHHHHHHHhhcC--CCC------hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCCh
Q 046354 3 QFGCTGKVKEATKLFDEMS--QPD------PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~--~~~------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 74 (510)
.+.+...+..|++.++... -|+ ....+.+...+.+.|.++.|+..|+...+..|+..+--.|+-++..-|+.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 3556677888888887665 232 23344455567788888888888888888778877655566666667888
Q ss_pred hhHHHHHHhhcc----CC--------hhhHHHHHHHHHcC---------C--ChHHHHHHHHhcccc--CCChh-hHHHH
Q 046354 75 DEARKVFDEIYE----GN--------VYSWTSLISGYFKA---------R--QVDEGRRLFDRMPLK--LKNVV-SWTTV 128 (510)
Q Consensus 75 ~~A~~~~~~~~~----~~--------~~~~~~li~~~~~~---------g--~~~~A~~~~~~m~~~--~~~~~-~~~~l 128 (510)
++..+.|.+|+. +| ...-..|+.-..++ + +.++++-.--++..- .|+-. -+.--
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 888888888833 11 01112222222221 1 112222211122110 12211 11111
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHH----HHHH-HHh-cCCHHHHHHHHhhCCC
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA----MITA-YVD-AGNMAQASELFNLMPQ 202 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----li~~-~~~-~g~~~~A~~~~~~~~~ 202 (510)
+.....+...+.+. ..--.-.-.+.+.|+++.|.+++.-....|..+-++ |-.. |.+ ..++.+|.+.-+....
T Consensus 406 le~lk~s~~~~la~-dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 406 LESLKASQHAELAI-DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHhhhhhhhh-hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 12111111111111 111122335778999999999988777555443322 2222 222 3357777777666554
Q ss_pred C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhh
Q 046354 203 R---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279 (510)
Q Consensus 203 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (510)
. |......-...-..+|++++|.+.|++.+.....-....|+.-+.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~------------------------------ 534 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA------------------------------ 534 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH------------------------------
Confidence 2 2222222223345689999999999999765433333333333321
Q ss_pred hhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
-..|++++|...|-++.. .+....--+...|-...++..|++++.+.... ++-|+.....|...|-+.
T Consensus 535 --------e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 535 --------EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred --------HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 678999999999987754 56677777888899999999999999777654 566778899999999999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHH-hhCCHHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR-LHGDVRMADYIG 435 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~ 435 (510)
|+-.+|.+.+-.-.+ -++.+..+...|..-|....-+++|+..|++..-.+|+..-|..++..|. +.|++.+|..+|
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999988766654 56779999999999999999999999999998756999999999987765 569999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+...+..|.+......|..++...|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999888888888877774
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.5e-13 Score=122.26 Aligned_cols=468 Identities=14% Similarity=0.108 Sum_probs=316.8
Q ss_pred CCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHH
Q 046354 7 TGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 7 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
++++..|.++|+... ..+...|..-+.+-.++.....|..+++.....-|.+ ..|-..+.+=-..|++..|+++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 467788999999998 4677888888999999999999999999998876754 455556666667899999999999
Q ss_pred hhc--cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh----------------hHH
Q 046354 83 EIY--EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------------EVI 144 (510)
Q Consensus 83 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a----------------~~~ 144 (510)
... +|+..+|++.|+.-.+.+..+.|..+|++..-..|++.+|.-..+---+.|....+ ...
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 985 59999999999999999999999999999877779999998888777777776655 444
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC---CCC--hhHHHHHHHHHHhcCCHHHHHHHH--------hhCCC---CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP---NKD--IVAWNAMITAYVDAGNMAQASELF--------NLMPQ---RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~---~~~~~~ 208 (510)
.+.+.+..-.++..++.|.-+|+-.. +.+ ...|..+...--+.|+-....... +.+.. -|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 55555555666777777777777665 222 345666665555566644433332 22222 355677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hhh----HHHHHH--Hh------hhhhhhhHHHHHHHHhCCCcchhhh
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPN-ETT----CTSILT--SC------EGMLENMLAHALAIRLGFEQETSLT 275 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~----~~~ll~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (510)
-..+..-...|+.+...++|+..... ++|- ... |.-+-- ++ .+......++..+.+ -++....++
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 77888888889999999999998765 4442 111 111111 11 123334444444444 233333444
Q ss_pred hhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc
Q 046354 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353 (510)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 353 (510)
..+--+| +....++.++..|.+++..... |...+|...|..-.+.++++.+..++++.++-+ +-|..+|......-
T Consensus 404 aKiWlmy-A~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMY-AQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHH-HHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 3333333 1112567788888888887765 666778878888888888888888888888764 45566777776666
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHH-----hhC--
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR-----LHG-- 426 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~-- 426 (510)
...|+.+.|..+|+-+.....+.-....|.+.|+.-...|.++.|..+++++.+..+...+|-++...-. ..|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~ 561 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDED 561 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccc
Confidence 7788888888888888764222223344556666667788888888888888766666667766665433 233
Q ss_pred ---------CHHHHHHHHHHHH----hcCCCCchh--HHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 427 ---------DVRMADYIGERLI----ELQPSSSGA--YVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 427 ---------~~~~A~~~~~~~~----~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+...|..+|+++. +..|..... +..+.+.-...|...+...+-.+|.+.+++
T Consensus 562 ~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 562 LAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 5677888888876 233322111 223333344566666666666666544444
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.5e-14 Score=126.08 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=138.5
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 363 (510)
....+.++....|.+..+ .|+.+|..-.+.+.-.+++++|..=|++.+.. .|+ ...|..+.-+.-+.+.++++.
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555443 34556666666666778899999999988874 444 345666655566888999999
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-------HH--HHHHHHHHHHhhCCHHHHHHH
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-------HV--VLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~~~~~~A~~~ 434 (510)
..|++.++ .++..+++|+.....+..+++++.|.+.|+...++.|. .. +-..++. +.-.+++..|+.+
T Consensus 449 ~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 449 KTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHH
Confidence 99999988 57778899999999999999999999999988877664 11 1122222 2234899999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.3e-13 Score=132.15 Aligned_cols=325 Identities=15% Similarity=0.142 Sum_probs=225.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 94 SLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 94 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
...+.+...|++++|.+++.++++. +.+.. .|.++...|...|+.+++...+-.+.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------------------ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPI---------------------AYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------------------hHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3334444458888888888888876 33333 44444555555555555555443322
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046354 171 -NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246 (510)
Q Consensus 171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 246 (510)
+.|...|..+.....+.|++++|.-.|.+..+ ++....---+..|-+.|+...|..-|.++.+...+.|..-+..+
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 56667888888888899999999999988876 33344444566788889999999999988775432222222222
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhc
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNH 321 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~ 321 (510)
+... +..+ ...++.+.|.+.++.... -+...+++++..|...
T Consensus 283 i~~~----------------------------~~~~-----~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 283 IRRV----------------------------AHYF-----ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHH----------------------------HHHH-----HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 2211 1111 333344566666555443 2334688888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCchh----------------------HH----HHHHhcCcCCcHHHHHHHHHHHHHhhCC
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEIT----------------------FV----GVLSDCSHAGLVEKGRKTFNLMSRAYGF 375 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~~----------------------~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (510)
..++.|......+......+|..- |. -+.-++.+.+..+....+....... .+
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~ 408 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-NV 408 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-cC
Confidence 999999988888876222222111 11 1222334444444444444445444 54
Q ss_pred CC--CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 376 KP--RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 376 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.| +...|.-+.++|...|++++|..++..+....+ +...|-.+..+|...|.+++|.+.|++++...|++...-..
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 44 577888999999999999999999999986655 56689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 046354 452 SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|+.++.+.|+.++|.+.++.+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999876
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=1e-11 Score=115.21 Aligned_cols=441 Identities=13% Similarity=0.069 Sum_probs=293.9
Q ss_pred ChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 9 KVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 9 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
+.++|..++.+..+ .+...|. +|++..-++.|..++++.++.-| +..+|.+-...--..|+.+...+++++.
T Consensus 391 ~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666652 3334443 45566677778888888777644 5666766666666677777777777665
Q ss_pred cc--------C----------------Chhh---------------------HHHHHHHHHcCCChHHHHHHHHhccccC
Q 046354 85 YE--------G----------------NVYS---------------------WTSLISGYFKARQVDEGRRLFDRMPLKL 119 (510)
Q Consensus 85 ~~--------~----------------~~~~---------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~ 119 (510)
+. - .+.| |+.-...|.+.+.++-|..+|....+-.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 21 1 1222 3333333444444444444444443331
Q ss_pred CChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 120 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
|. +...|...+..-...|..+....+|++.. +.....|-.....+...|++..|..+
T Consensus 547 p~--------------------k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 547 PC--------------------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred cc--------------------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 11 33444455555555677777777777776 44455666667777788888888888
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH--HHh-hhhhhhhHHHHHHHHhCCCc
Q 046354 197 FNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL--TSC-EGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 197 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll--~~~-~~~~~~~~~~~~~~~~~~~~ 270 (510)
+.+.-+ | +...|-+.+.....+.+++.|..+|.+.... .|+...|..-+ .-+ ....+........ -..++.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~-lk~fp~ 683 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEA-LKSFPD 683 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHH-HHhCCc
Confidence 777665 3 4566777777788888888888888887663 34444433222 222 2222222222211 123444
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC--CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
-...|..+...+ -..++++.|...|..-.+ |+. -.|-.+...=-+.|.+..|..+|++.+-.+ +-+...|.
T Consensus 684 f~Kl~lmlGQi~-----e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 684 FHKLWLMLGQIE-----EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred hHHHHHHHhHHH-----HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 555666666777 778888899888887766 443 467777777778889999999999888764 66777888
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 427 (510)
..|+.-.+.|+.+.|..++.++.+ .++.+...|.--|.+..+.++-......+++.. .|+...-.+...+.....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHH
Confidence 899999999999999999988887 466677788878888878787777777766654 666777777777788889
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeEEEeC
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVK 488 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 488 (510)
+++|...|.++.+.+|++..+|.-+...+.+.|.-++-.+++.+-.. ..+.-|..|+-+.
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~-~EP~hG~~W~avS 892 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET-AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCCcHHHHHh
Confidence 99999999999999999999999999999999988888888874441 2222244565443
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.8e-12 Score=113.53 Aligned_cols=398 Identities=14% Similarity=0.124 Sum_probs=278.1
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~ 133 (510)
+...|......=...+++..|+++|+..+. .+...|.-.+.+-.++..+..|..++++....-|.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd---------- 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD---------- 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------
Confidence 444555555555667888899999999866 4566788888888899999999999998877645432
Q ss_pred hcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHH
Q 046354 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWN 209 (510)
Q Consensus 134 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 209 (510)
..|...+-.-...|++..|.++|+.-. +|+...|.+.|..-.+-+.++.|..+++...- |++.+|-
T Consensus 142 ----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi 211 (677)
T KOG1915|consen 142 ----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI 211 (677)
T ss_pred ----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH
Confidence 223333444556788889999998866 89999999999999999999999999988764 8999998
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh-------hhhhhHHHHHHHHhCCCcc-hhhhhhhhhh
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-------MLENMLAHALAIRLGFEQE-TSLTYKCTCH 281 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 281 (510)
-....-.+.|+...|..+|+...+. -.|...-..++.+++. ..+...++.+....-.... ...+......
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8888888999999999999887662 2233333344444333 3333333444333322211 2233333222
Q ss_pred ccccccccccChhhHHHHh--------cccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--h---
Q 046354 282 YVFWDWGFQLDVNSARLAF--------ERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--T--- 345 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~--------~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~--- 345 (510)
- -+-|+....+... +..... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .
T Consensus 290 E-----KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 290 E-----KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred H-----HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 2 2233333222221 222222 4456777777777889999999999998875 666432 1
Q ss_pred --HHHHHHhc---CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH----HhhcCChHHHHHHHhhCCCCCCcHHHHH
Q 046354 346 --FVGVLSDC---SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI----LRRAGQVKEAMRVVSKMPPHERDHVVLG 416 (510)
Q Consensus 346 --~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (510)
|.-+=-+| ....|++.+.++++...+ -++....|+.-+--+ -.++.++..|.+++.......|...+|.
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 11111111 356788899999999887 456666666544333 3578889999999999888899999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-HhhccccceeE
Q 046354 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQ 484 (510)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~~ 484 (510)
..|..-.+.++++....+|++.++.+|.+..+|...+..-...|+++.|..+|+... +.....|..-|
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999988889999999999999999999999999999999999999999999998887 54445555433
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=4.5e-16 Score=140.46 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 179 AMITAYVDAGNMAQASELFNLM-PQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
.+...+.+.|++++|+++++.. .. .|...|..+.......++++.|...++++...+.. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~----- 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ----- 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-----
Confidence 4466677777777777777432 22 24455566666666777777787777777654321 1111211111
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
+ ...+++++|.+++....+ ++...+..++..+.+.++++++..++
T Consensus 87 ----------------------------l-----~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 87 ----------------------------L-----LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ----------------------------c-----cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 0 355667777776665533 45566777888899999999999999
Q ss_pred HHHHHcC-CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-
Q 046354 332 ARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH- 408 (510)
Q Consensus 332 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 408 (510)
+.+.... .+++...|..+...+.+.|+.++|.+.+++..+. .| ++.....++..+...|+.+++.++++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 9987632 3456667888888899999999999999999975 45 5778889999999999999988888776544
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+..+..+|...|+.++|...+++..+..|+++.....++.++...|+.++|.+++.++-
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34667888999999999999999999999999999999999999999999999999999988765
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=8.6e-13 Score=124.60 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=156.1
Q ss_pred HHhcCchHHHHHHHhhCC--CCChhHHH--HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH
Q 046354 153 LERNAMTKLAREYFVQMP--NKDIVAWN--AMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~--~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
..+.|+++.|.+.+.++. .|+...+. .....+...|++++|...++.+.+ .++.....+...|.+.|++++|.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 345566666666666655 34433222 335678889999999999998876 35677888999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 226 KLLNLMFQSRFMPNETTCTSIL-TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
+++..+.+.+..++. ....+- .++.. ++... ....+.+...++++.+.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~~~a~~~-------------------------l~~~~-----~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLEQQAWIG-------------------------LMDQA-----MADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHH-------------------------HHHHH-----HHhcCHHHHHHHHHhCC
Confidence 999999887654322 111111 00000 00000 22223344444444443
Q ss_pred C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcch
Q 046354 305 A---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 305 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (510)
. .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .+-|+..
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHH
Confidence 3 35556666677777777777777777776652 4444211 223333446777777777776653 3445555
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
+..+...+.+.|++++|.+.|+...+..|+...+..+...+.+.|+.++|.++|++.+.+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666777777777777777777777666677776666777777777777777777766543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.8e-12 Score=124.53 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=85.9
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHH
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVF 81 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~ 81 (510)
.+|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-.+....| |...|..+.....+.|+++.|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3599999999999998 35678899999999999999999998888777766 6678888888888888899888888
Q ss_pred HhhccCChh---hHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 82 DEIYEGNVY---SWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 82 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+.++.+.. .+---+..|-+.|+...|..-|.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 888663322 2222344555666666666666666554
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-13 Score=128.29 Aligned_cols=274 Identities=14% Similarity=0.063 Sum_probs=213.1
Q ss_pred CHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHhhhhhhhhHHHHHH
Q 046354 189 NMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALA 263 (510)
Q Consensus 189 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (510)
+..+|...|..+.. +| ..+...+..+|...+++++|.++|+.+++.. .--+..+|.+.+..+.+...--.... -
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq-~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ-D 412 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH-H
Confidence 46678888877554 33 3566677888888888999999988887743 12355667777765432211111111 1
Q ss_pred HHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
.-...+..+..|-++.++| .-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 413 Li~~~~~sPesWca~GNcf-----SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCF-----SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchh-----hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 1223466788999999999 9999999999999999884 446788888888889999999999998764 33
Q ss_pred CCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 341 PDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 341 p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
|.. ..|..+...|.+.++++.|+-.|+++.+ +.| +..+...+...+.+.|+.++|+.+++++.-.+| |+.+--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 332 2555677789999999999999999984 556 566777888899999999999999999986666 6666666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-+..+...+++++|...++++++.-|++...|..++.+|.+.|+.+.|+.-|.-+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 67777888999999999999999999999999999999999999999998887665
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=3e-11 Score=112.11 Aligned_cols=368 Identities=12% Similarity=0.068 Sum_probs=229.2
Q ss_pred hcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHH
Q 046354 70 KAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVIS 145 (510)
Q Consensus 70 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 145 (510)
...+.++|+-++.+..+ .+...|. +|++..-++.|..++++.++. +.+...|.+-...-..+|+.+.
T Consensus 388 elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m----- 458 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM----- 458 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH-----
Confidence 33455556666666644 2223333 445556677788888887777 4455556555544444444433
Q ss_pred HHHHHHHHHhcCchHHHHHHHhhCC--------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHH
Q 046354 146 WTTMCTGLERNAMTKLAREYFVQMP--------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ------RNVWTWNAM 211 (510)
Q Consensus 146 ~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l 211 (510)
...++++.. ..+...|-.=...|-..|-+-.+..+...... .--.+|..-
T Consensus 459 ----------------v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 459 ----------------VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD 522 (913)
T ss_pred ----------------HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence 333332222 11222222222333333333333333332221 112345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhhhhhhhHHHHHHHH--hCCCcchhhhhhhhhhccccccc
Q 046354 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSCEGMLENMLAHALAIR--LGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 212 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
...|.+.+.++-|..+|...++ +.|...+ +......-..........++..+ ...+.....|-.....+ -
T Consensus 523 a~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~-----w 595 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK-----W 595 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH-----H
Confidence 5555555555555555554443 2222211 11111111111111111111111 12233344444444444 6
Q ss_pred cccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
..|++..|+.++....+ | +...|-+-+.......+++.|..+|.+... ..|+...|.--+..---.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 67999999999888776 3 445788888888899999999999998876 468888887777666678899999999
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+++..+. ++.-...|..+.+.+.+.++++.|.+.|..-.+..|+ +..|..|...-.+.|++.+|..++++..-.+|.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 9999884 4555778888999999999999999999988878885 556777777777889999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...|...+..-.+.|+.+.|..+..+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999997766544
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=9.9e-13 Score=124.18 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=205.1
Q ss_pred cCchHHHHHHHhhCCC--CChhHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CChhhHH--HHHHHHHhcCChHHHHHHH
Q 046354 156 NAMTKLAREYFVQMPN--KDIVAWNAM-ITAYVDAGNMAQASELFNLMPQ--RNVWTWN--AMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~A~~~~ 228 (510)
.|+++.|.+.+..... +++..+..+ ..+..+.|+.+.|...+.++.+ |+..... .....+...|++++|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999988887662 233333333 4455899999999999999877 4543332 3366888999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC-
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD- 307 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 307 (510)
+++.+.. |+ ++.+...+...| ...|++++|.+++..+.+..
T Consensus 177 ~~~~~~~--P~-------------------------------~~~al~ll~~~~-----~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 177 DKLLEVA--PR-------------------------------HPEVLRLAEQAY-----IRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHhcC--CC-------------------------------CHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHcCC
Confidence 9997744 33 233333344445 88899999999998887621
Q ss_pred --h--------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 308 --V--------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 308 --~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. .+|..++.......+.+...++|+.+.+. .+.+......+..++...|+.++|.+.+++..+. +|
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~ 294 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY 294 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 1 13334444444555667777777776543 3557778888999999999999999999998864 55
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
++... ++.+....++.+++.+..+...+..| |...+..+...|...|++++|.+.|+++++..|++ ..+..++.++
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~ 371 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADAL 371 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 55332 34444566999999999999887888 45567888899999999999999999999999996 5678999999
Q ss_pred HHcCCChHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKME 473 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~ 473 (510)
.+.|+.++|..++++-.
T Consensus 372 ~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999998654
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-11 Score=113.26 Aligned_cols=439 Identities=11% Similarity=0.018 Sum_probs=301.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhh--ccCChhhHHHHHHHHHc
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYFK 101 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~ 101 (510)
+..-+..+.+-+..+.++..|.-+-++.....-|+...--++.++.-.|+++.|..+...- .+.|..+.......+.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3445666666667777888888777777665555555555778888888888887776543 56788888888888899
Q ss_pred CCChHHHHHHHHhccccCCChhhHHHH--HHHHHhcCCc----chhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChh
Q 046354 102 ARQVDEGRRLFDRMPLKLKNVVSWTTV--VLGCAHNGLI----AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~~~~~~~~~~l--l~~~~~~~~~----~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 175 (510)
..++++|..++...... -+...+..- ......++.. .......+..-...|....+.++|...|.+....|+.
T Consensus 95 lk~~~~al~vl~~~~~~-~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~ 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVE-TNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK 173 (611)
T ss_pred HHHHHHHHHHhcccchh-hcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh
Confidence 99999999988843211 011110000 0000000100 0001222222334566667778888888877755555
Q ss_pred HHHHHHHH---HHhc------------------CCHHHHHHHHhhC----CC----------------CChhhHHHHHHH
Q 046354 176 AWNAMITA---YVDA------------------GNMAQASELFNLM----PQ----------------RNVWTWNAMIDR 214 (510)
Q Consensus 176 ~~~~li~~---~~~~------------------g~~~~A~~~~~~~----~~----------------~~~~~~~~li~~ 214 (510)
.+.++... ..-. -+.+....+|+-. .. .++........-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 44433221 1100 1112222223211 00 234445555666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHH--HHhCCCcchhhhhhhhhhccccccccccC
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
+...+++.+..+++++..+. .++....+..-|..+-........+... .....|..+..|.++...| ...|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY-----l~i~k 327 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY-----LMIGK 327 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH-----HHhcC
Confidence 78899999999999998774 2333344444444554555555444443 3456788888999999999 88899
Q ss_pred hhhHHHHhcccCCCC---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEAKD---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
..+|++.|.+...-| ...|-.+..+|+-.|..+.|+..+...-+. ++-....+-.+..-|.+.++.+.|.++|...
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999887633 348999999999999999999999887764 3333334445556688899999999999998
Q ss_pred HHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 370 SRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------ER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 370 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
.. +.| |+.+.+-+.-..-..+.+.+|..+|+..... .+ -..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 407 ~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 407 LA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred Hh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 74 455 7888888887777889999999999876521 22 455789999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.|.++.++..++-+|...|+.+.|+..|.+..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999766
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.5e-11 Score=108.45 Aligned_cols=216 Identities=10% Similarity=0.080 Sum_probs=147.3
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHHHHHhh----ccCCh
Q 046354 16 LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEI----YEGNV 89 (510)
Q Consensus 16 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~ 89 (510)
++-+..+.+..+|..+|.++++-...+.|.+++++.... ..+..+||.+|.+-.-..+ .+++.+| ..||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 444455667889999999999999999999999998775 4588899999876543333 6777777 45999
Q ss_pred hhHHHHHHHHHcCCChHHH----HHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh----------------------
Q 046354 90 YSWTSLISGYFKARQVDEG----RRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL---------------------- 141 (510)
Q Consensus 90 ~~~~~li~~~~~~g~~~~A----~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a---------------------- 141 (510)
.|+|+++++..+.|+++.| .+++.+|++. .|...+|..+|..+++-++....
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999988764 5667777776 89999999999999888877554
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC--------CCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCh
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP--------NKDI---VAWNAMITAYVDAGNMAQASELFNLMPQ----RNV 205 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~ 205 (510)
+...|...+..|.+..+.+.|.++..-.. .|+. .-|..+....++.-..+.-...|+.|.. |+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 44455555555555555555555433322 1111 1233444445555555555555555554 555
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
.+...++.+..-.|+++-.-+++.+++..|
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555655555665555544
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.3e-12 Score=113.35 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=153.1
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHH---HHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMI---LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|.+.+++....|...-.+|. -.+-..|+.++|+..|-++..- +.-+......+...|....+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 5689999999999999887765444433 2466789999999999887653 34456677778888888899999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
++-.... -++.|+.+.+-|.+.|-+.|+-..|.+..-.--.- +.+..+..-|...|....-+++|+..|+++--+.|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9988764 45668999999999999999999999876544333 44788888888888888889999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+.+.....++.++.+.|++.+|..+++..-+..+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 98877888889999999999999999987754443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1e-11 Score=118.01 Aligned_cols=286 Identities=11% Similarity=0.032 Sum_probs=177.3
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCCh--h
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDI--V 175 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~--~ 175 (510)
...|+++.|.+.+.+..+..|+...+ +-....+....|+.+.|.+.+.+.. .|+. .
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--------------------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~ 154 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLN--------------------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL 154 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHH--------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH
Confidence 45899999999998877755553222 2233556677788889999988864 3444 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
........+...|+++.|...++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..+...
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 444457888999999999999999876 4 6678889999999999999999999999998754332221111111100
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFR 329 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 329 (510)
.. ..- ......+.....++.... .+...+..+...+...|+.++|.+
T Consensus 235 ~l-------------------------~~~-----~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 235 LL-------------------------DEA-----MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH-------------------------HHH-----HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 00 000 111223333444444433 356677777777788888888888
Q ss_pred HHHHHHHcCCCCCchhH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc--chhHhHHhHHhhcCChHHHHHHHh-
Q 046354 330 LFARMLKSGTKPDEITF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA--EHYSCLADILRRAGQVKEAMRVVS- 403 (510)
Q Consensus 330 ~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~- 403 (510)
++++..+. .||.... ..........++.+.+.+.++...+. .+-++ ....++...+.+.|++++|.+.|+
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88777764 3443311 11111123345666666666666553 22233 444566666666666666666666
Q ss_pred -hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 404 -KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 404 -~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...+..|+...+..+...+.+.|+.++|.+++++.+
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343345666666666666666666666666666654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=6.2e-13 Score=123.70 Aligned_cols=281 Identities=13% Similarity=0.110 Sum_probs=211.0
Q ss_pred ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHH
Q 046354 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAW 177 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~ 177 (510)
+..+|...|+.+....+|.. .+...+..+|...+++++++++|+.+. -.+..+|
T Consensus 334 ~~~~A~~~~~klp~h~~nt~--------------------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG--------------------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH
Confidence 56778888887655455543 344557788889999999999999887 2356788
Q ss_pred HHHHHHHHhcCCHHH-HHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 178 NAMITAYVDAGNMAQ-ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 178 ~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++.+..+-+.=...- |..+.+.. ...+.+|.++..+|..+++.+.|++.|++..+ +.|+ .+|.
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~-faYa------------ 457 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR-FAYA------------ 457 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc-cchh------------
Confidence 887765433322222 22222222 25678999999999999999999999999965 3331 2222
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHH---HHHHHHhcCChhhHHHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA---MILAYSNHGHGFQVFRLFAR 333 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 333 (510)
++.+..-+ .....+|.|...|+.....++..||+ +...|.+.++++.|+-.|+.
T Consensus 458 ------------------yTLlGhE~-----~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 458 ------------------YTLLGHES-----IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred ------------------hhhcCChh-----hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 22233333 66778999999999999877776665 66789999999999999999
Q ss_pred HHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-
Q 046354 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD- 411 (510)
Q Consensus 334 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 411 (510)
..+-. +-+.+....+...+.+.|+.++|+++++++.. +.| |+..--.-+..+...+++++|...++++++..|+
T Consensus 515 A~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 515 AVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred hhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 98743 34455667777778899999999999999985 344 5555455667778899999999999999988885
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
...+-.+...|.+.|+.+.|+.-|..+.+++|....
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 456777778899999999999999999999998754
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=9.4e-15 Score=131.85 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=108.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccc
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
.+...+.+.|++++|++++++......+|+...|..++.. .. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~-------------------------------La-----~~ 56 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLAD-------------------------------LA-----WS 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc-------------------------------cc-----cc
Confidence 4577888999999999999765544334555444443332 22 66
Q ss_pred ccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.++.+.|...++++... ++..+..++.. ...+++++|.+++....+. .++...+..++..+...++++++..++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 78999999999999873 34466677776 7899999999999887664 356677788888889999999999999
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.+......++++..|..+...+.+.|+.++|.+.+++..+..| |......++..+...|+.+++..+++...+..|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 99876534466788889999999999999999999999998888 47788899999999999999999999999888999
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccc
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
+..+..++.+|...|+.++|+.++++..+..+..|.
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999999999999999999999999998765555554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.9e-12 Score=111.68 Aligned_cols=289 Identities=15% Similarity=0.057 Sum_probs=195.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH----
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---- 247 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll---- 247 (510)
.|...+-.....+.+.|..+.|...|......-+..|.+.+....-..+.+.+..+.. |...|.+.+...+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHHH
Confidence 3444444444455566666667666666555444455554444333333333222211 1111111111111
Q ss_pred -HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC------hhhH---------
Q 046354 248 -TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD------VVSW--------- 311 (510)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~--------- 311 (510)
.......+...........|++.+..+-+....+. -...+++.|+.+|+++.+.| ..+|
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~-----y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAAS-----YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 11122233333333344555666665555555555 67788888888888887622 2222
Q ss_pred ----------------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 312 ----------------------TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 312 ----------------------~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
.++..-|+-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 234445566778999999999998853 333457777788899999999999999999
Q ss_pred HHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.+- .+-|-..|-.|.++|.-.+...-|+-.|++.....| |...|.+|..+|.+.++.++|+..|++++.....+...
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 852 334788889999999999999999999999988877 78899999999999999999999999999888777788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..|+.+|.+.++.++|.+++++-.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999988665
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=8.8e-11 Score=108.85 Aligned_cols=447 Identities=13% Similarity=0.128 Sum_probs=274.8
Q ss_pred ccCCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHH
Q 046354 4 FGCTGKVKEATKLFDEMSQ-----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
+.++|++......|+.... .-...|...+...-+.+-++.++++|++..+..| ..-+..|..++..+++++|.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHH
Confidence 3456666666677766651 2335677777777777777788888888877444 33666777778888888888
Q ss_pred HHHHhhcc--------------------------C--------------------C--hhhHHHHHHHHHcCCChHHHHH
Q 046354 79 KVFDEIYE--------------------------G--------------------N--VYSWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 79 ~~~~~~~~--------------------------~--------------------~--~~~~~~li~~~~~~g~~~~A~~ 110 (510)
+.+..++. | | ...|++|.+.|++.|++++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 87776622 1 1 1248999999999999999999
Q ss_pred HHHhccccCCChhhHHHHHHHHHhcCCcchh---------------------hHHHHHHHHH------------------
Q 046354 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL---------------------EVISWTTMCT------------------ 151 (510)
Q Consensus 111 ~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a---------------------~~~~~~~l~~------------------ 151 (510)
+|++.......+.-|+.+..+|+.......+ .-..+..+++
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 9999887645555555555555432211100 0011111111
Q ss_pred ------HHHhcCchHHHHHHHhhCC---CC------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHH
Q 046354 152 ------GLERNAMTKLAREYFVQMP---NK------DIVAWNAMITAYVDAGNMAQASELFNLMPQRN-------VWTWN 209 (510)
Q Consensus 152 ------~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~ 209 (510)
.-...|+..+-...+.++. .| -...|..+...|-..|+++.|..+|++..+.+ ..+|.
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 1112344555555555544 11 12357888899999999999999999988722 24677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------CHhh---HHHHHHHhhhhhhhhHHHHHHHHhCCC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMP-----------------NETT---CTSILTSCEGMLENMLAHALAIRLGFE 269 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----------------~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (510)
.....-.+..+++.|+++++......-.| +... |.-+..+++.+.....++..++...+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 77777778889999999888875432221 1222 344445666666777777777776665
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC----CCh-hhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCC
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDV-VSWTAMILAYSN---HGHGFQVFRLFARMLKSGTKP 341 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p 341 (510)
....+.|.. ..+ -...-++++.+++++-.. |++ ..|+..+.-+.+ ..+++.|..+|++..+ |++|
T Consensus 510 TPqii~NyA-mfL-----Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 510 TPQIIINYA-MFL-----EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred CHHHHHHHH-HHH-----HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 444444332 222 556678999999998876 554 378887776654 2468999999999998 7887
Q ss_pred CchhHHHHHHhc--CcCCcHHHHHHHHHHHHHhhCCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHH
Q 046354 342 DEITFVGVLSDC--SHAGLVEKGRKTFNLMSRAYGFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417 (510)
Q Consensus 342 ~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (510)
...-+..|+-+- ...|....|..+++++.. ++++. ..+|+.+|.--...=-+.....+|++..+.-|+...-..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHH
Confidence 765443443322 245777888888888765 44442 345555554333333334444555555544454443222
Q ss_pred H---HHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCC
Q 046354 418 L---LGACRLHGDVRMADYIGERLIELQPSS--SGAYVLSANVHAARGE 461 (510)
Q Consensus 418 l---~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 461 (510)
. ...-.+.|..+.|..+|.-.-+..|.. +..|.+.-..-.+-|+
T Consensus 661 clrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 2 222345566666666666665444332 2225555555555565
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=4.4e-11 Score=105.00 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=210.8
Q ss_pred CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHH
Q 046354 102 ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAW 177 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 177 (510)
.|++.+|+++..+-.+..+.+ ...|..-+.+....|+.+.+-+++.+.. .++...+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p--------------------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP--------------------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch--------------------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence 799999999998866542222 2233344556667788888888888876 3344566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
-+........|+...|..-++++.+ .++........+|.+.|++.+...++..|.+.|.--++..-..=-.++
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~---- 232 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW---- 232 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH----
Confidence 7777889999999999888877665 678899999999999999999999999999998665543221111111
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
..++.-. ...+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.
T Consensus 233 ---------------------~glL~q~-----~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 233 ---------------------EGLLQQA-----RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred ---------------------HHHHHHH-----hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 1111111 333334444455666554 45666777888889999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (510)
++..+++..|+ -...-.+.+.++...-.+..+...+. .+.++..+.+|...|.+.+.|.+|...|+...+..|+
T Consensus 287 ~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 287 EDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 99988877776 22233466778888888888887774 3445578889999999999999999999988888999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+|..+..++.+.|+.++|.+.+++.+
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999999999999887
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.6e-11 Score=104.37 Aligned_cols=294 Identities=12% Similarity=0.108 Sum_probs=186.4
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChh----
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV---- 175 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~---- 175 (510)
-+++.++|.++|-+|.+ .|..|+. +..++.+.|.+.|..+.|+++.+... .||..
T Consensus 47 Ls~Q~dKAvdlF~e~l~--~d~~t~e------------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ--EDPETFE------------------AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred hhcCcchHHHHHHHHHh--cCchhhH------------------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHH
Confidence 35789999999999998 5555543 33456777888899999999999887 55542
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHhhCCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 176 --AWNAMITAYVDAGNMAQASELFNLMPQ-R--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 176 --~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
....|..-|...|-+|+|+.+|..+.+ + -......|+..|-...+|++|+++-+++...|-.+...- |..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----IAq- 181 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----IAQ- 181 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----HHH-
Confidence 334566778899999999999999987 3 245677899999999999999999999977654433222 211
Q ss_pred hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHH
Q 046354 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
.|.-+...+....+++.|..+
T Consensus 182 -----------------------------------------------------------fyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 182 -----------------------------------------------------------FYCELAQQALASSDVDRAREL 202 (389)
T ss_pred -----------------------------------------------------------HHHHHHHHHhhhhhHHHHHHH
Confidence 133344455555666666666
Q ss_pred HHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCC
Q 046354 331 FARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409 (510)
Q Consensus 331 ~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (510)
+++..+.. |+.+ .-..+.+.....|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++....+.++.+..
T Consensus 203 l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 66666542 3222 2223444555666777777777766654 323334555666667777777777777666666555
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HH--HcCCChHHHHHHHHHH-Hhhccccce
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV-HA--ARGEWDEFAQVRKKME-RRVKKVASF 482 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~~~A~~~~~~~~-~~~~~~p~~ 482 (510)
++...-..+...-....-.+.|...+.+-+...|.- ..+..++.. .. ..|.+.+-+-.+..|. +.++..|.+
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555544444444444444455555555555555553 233333333 22 2344666666677776 555555543
No 49
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=6.7e-11 Score=104.46 Aligned_cols=322 Identities=14% Similarity=0.082 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMP----QRNVWTWNAMID 213 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 213 (510)
+..++..++.+.++-...+.|.+++++.. +-+..++|.+|.+-.-.-+ .+++.+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 66788888888888888888999888876 4566778887765433322 44555554 399999999999
Q ss_pred HHHhcCChHH----HHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHH--------HHhCCC----cchhhhhh
Q 046354 214 RYARNGPEGA----AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA--------IRLGFE----QETSLTYK 277 (510)
Q Consensus 214 ~~~~~~~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~ 277 (510)
+..+.|+++. |++++.+|++.|+.|...+|..+|....+-.+...+.... ....++ .+...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998765 4678899999999999999999998665444432221111 111222 23344445
Q ss_pred hhhhccccccccccChhhHHHHhcccCC--------CC---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 278 CTCHYVFWDWGFQLDVNSARLAFERLEA--------KD---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 278 l~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.+..+ ....+.+.|.++-.-+.. ++ ..-|..+....++....+.....|+.|.-.-+-|+..+.
T Consensus 362 AM~Ic-----~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 362 AMSIC-----SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHH-----HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 55555 566677777776654443 11 234566777778888888888999998877778888888
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-Ch--------HH-----HHHHH-------hhC
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QV--------KE-----AMRVV-------SKM 405 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~~ 405 (510)
..++++....|.++-.-++|..+..- |.........-+...+++.. +. .. |..++ .++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88999888888888888888887764 54443333333333333322 10 00 01111 112
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchh--HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSSGA--YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 406 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+.+-.....+..+..+.+.|..++|.+++....+.. |..|.. ...+...-.+......|..+++-|.
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2122234444555555667777777777777665222 333222 2334444555666667777777665
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.1e-11 Score=105.39 Aligned_cols=285 Identities=11% Similarity=0.068 Sum_probs=204.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhhhh
Q 046354 180 MITAYVDAGNMAQASELFNLMPQ---RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCEGM 253 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~ 253 (510)
+..++-.....+++.+-...... |+. ..-+....+.....++++|+.+|+++.+... --|..+|..++-.-..-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34556666666666655555443 332 2223333445567788888888888877631 12455665555432210
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
. .....+.....--+-.+.++-.+.+.| +-.++.++|...|++..+- ....|+.|..-|....+...|...
T Consensus 313 s-kLs~LA~~v~~idKyR~ETCCiIaNYY-----Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 S-KLSYLAQNVSNIDKYRPETCCIIANYY-----SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred H-HHHHHHHHHHHhccCCccceeeehhHH-----HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 0 001111111111122334445556666 8889999999999998873 346899999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-C
Q 046354 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-E 409 (510)
Q Consensus 331 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 409 (510)
+++.++- .+.|-..|-.|.++|.-.+.+.=|+-+|++... --+.|+.+|.+|.++|.+.++.++|++.|.+.... +
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999986 366778999999999999999999999999986 23448999999999999999999999999998744 4
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE-------LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+...+..|...|.+.++.++|.+.|++.++ ..|.-..+..-|+.-+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4668999999999999999999999999885 334333444557777888999999887665544
No 51
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=7.8e-10 Score=101.86 Aligned_cols=433 Identities=10% Similarity=0.068 Sum_probs=263.2
Q ss_pred CcccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHH
Q 046354 2 SQFGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
+.++..|++++|.+....+. +.+...+..-+-++.+.+++++|+.+.+.-.....+...+-.-+.+..+.+..++|.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 45678999999999999887 345667777778899999999999776655432122222212233345889999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCc
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 158 (510)
..++...+.+..+...-...+-+.|++++|..+|+.+.+. +...+...+++- ++. .+-
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~n----------------l~a----~~a 157 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRAN----------------LLA----VAA 157 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHH----------------HHH----HHH
Confidence 9999666666667777788889999999999999999774 222222222110 000 000
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------C--CC---h-----hhHHHHHHHHHh
Q 046354 159 TKLAREYFVQMPN---KDIVAWNAMITAYVDAGNMAQASELFNLMP--------Q--RN---V-----WTWNAMIDRYAR 217 (510)
Q Consensus 159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~--~~---~-----~~~~~li~~~~~ 217 (510)
.-.+. +.+.... .+-..+......+...|++.+|+++++... + .+ . .+--.|..++..
T Consensus 158 ~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 158 ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 01111 2333331 122223334556778899999999988772 1 11 1 223456667888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh------hhhhh------hHHHHHH-----HHhC-CCcchhhh-hhh
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE------GMLEN------MLAHALA-----IRLG-FEQETSLT-YKC 278 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~~~~------~~~~~~~-----~~~~-~~~~~~~~-~~l 278 (510)
.|+..+|..++...+... .+|..........+. ...+. ....... .... -....... +.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988764 344433333332111 11110 0000000 0000 00111111 222
Q ss_pred hhhccccccccccChhhHHHHhcccCCCC-hhhHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcC
Q 046354 279 TCHYVFWDWGFQLDVNSARLAFERLEAKD-VVSWTAMILAYS--NHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCS 354 (510)
Q Consensus 279 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 354 (510)
+.+ ..+..+.+.++-..+.... ...+.+++.... +...+.+|.+++...-+.. +-. .......++...
T Consensus 316 L~l-------~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 316 LAL-------FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHH-------HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 222 3455666777766666532 334445544332 2335778888887776642 222 334555566778
Q ss_pred cCCcHHHHHHHHH--------HHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC----CCcHH----HHHHH
Q 046354 355 HAGLVEKGRKTFN--------LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH----ERDHV----VLGAL 418 (510)
Q Consensus 355 ~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~----~~~~l 418 (510)
..|+++.|.+++. .+.+ +...+.+...+...+.+.++-+.|..++.+.... .+... ++.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 4443 3445667777888888888866666666544321 22222 34444
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
...-.++|+-++|...++++.+.+|++......++.+|+.. +.+.|..+-.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44456779999999999999999999999999999998865 4566665544
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=2.1e-11 Score=115.87 Aligned_cols=278 Identities=10% Similarity=0.002 Sum_probs=197.9
Q ss_pred HhcCchHHHHHHHhhCC--CCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--hHHHHHHHHHhcCChHHHHH
Q 046354 154 ERNAMTKLAREYFVQMP--NKDIV-AWNAMITAYVDAGNMAQASELFNLMPQ--RNVW--TWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~A~~ 226 (510)
...|+++.|.+.+.... .|++. .+-....+..+.|+.+.|.+.+.+..+ |+.. ..-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45799999999998877 44433 344456778889999999999998754 4442 34445788889999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC
Q 046354 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306 (510)
Q Consensus 227 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 306 (510)
.++.+.+.. |+ ++.+...+...+ ...|+++.|.+.+..+.+.
T Consensus 175 ~l~~l~~~~--P~-------------------------------~~~~l~ll~~~~-----~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMA--PR-------------------------------HKEVLKLAEEAY-----IRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhC--CC-------------------------------CHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHc
Confidence 999998754 33 223333344444 8899999999999888752
Q ss_pred ---ChhhHHH----HHHHHHhcCChhhHHHHHHHHHHcC---CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 307 ---DVVSWTA----MILAYSNHGHGFQVFRLFARMLKSG---TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 307 ---~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+...+.. ........+..+++...+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+. .
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~ 293 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---L 293 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---C
Confidence 2222311 1112233333344444555555432 1236778888889999999999999999999975 3
Q ss_pred CCcch---hHhHHhHHhhcCChHHHHHHHhhCCCCCCc-H--HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCCchh
Q 046354 377 PRAEH---YSCLADILRRAGQVKEAMRVVSKMPPHERD-H--VVLGALLGACRLHGDVRMADYIGE--RLIELQPSSSGA 448 (510)
Q Consensus 377 ~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~ 448 (510)
|+... ...........++.+.+.+.+++..+..|+ + ....++...+.+.|++++|.+.|+ ...+..|++. .
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-D 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-H
Confidence 44331 111222233457888999999888877774 4 566788999999999999999999 5667888764 5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..++.++.+.|+.++|.+++++..
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7799999999999999999999764
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=2.2e-09 Score=99.91 Aligned_cols=429 Identities=13% Similarity=0.112 Sum_probs=257.7
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCC---ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHc
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK 101 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 101 (510)
+..|..-+..+..+|+.......|+.....-| ...+|...+......+-++-+.++++..++-+...-+-.|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45677777788889999999999998876645 446788888888889999999999999998888888999999999
Q ss_pred CCChHHHHHHHHhcccc--------CCChhhHHHHHHHHHhcCCcchh-----------------hHHHHHHHHHHHHhc
Q 046354 102 ARQVDEGRRLFDRMPLK--------LKNVVSWTTVVLGCAHNGLIAKL-----------------EVISWTTMCTGLERN 156 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~--------~~~~~~~~~ll~~~~~~~~~~~a-----------------~~~~~~~l~~~~~~~ 156 (510)
.+++++|.+.+...... +.+...|..+-....++.+.-.. -...|..|++-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 99999999999888764 33444555554444433322111 233445555555555
Q ss_pred CchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH--hcC------ChHHHHH
Q 046354 157 AMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA--RNG------PEGAAMK 226 (510)
Q Consensus 157 ~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~------~~~~A~~ 226 (510)
|.++.|.++|++.. ...+.-++.+-++|+..-..--+ ..+. .. ..+ +++-...
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~----------------~~me-~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVA----------------AKME-LADEESGNEEDDVDLELHMA 324 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHH----------------HHHh-hhhhcccChhhhhhHHHHHH
Confidence 55555555555544 11222222222222221100000 0000 00 000 1111222
Q ss_pred HHHHHHHCC-----------CCCCHhhHHHHHHHhhh-hhhhhHHHHHHHH-----hCCCcchhhhhhhhhhcccccccc
Q 046354 227 LLNLMFQSR-----------FMPNETTCTSILTSCEG-MLENMLAHALAIR-----LGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 227 ~~~~m~~~g-----------~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
-|+.+.+.+ -+.+..++..-+....+ .......+....+ .........|..+...| -.
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY-----e~ 399 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY-----EN 399 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH-----Hh
Confidence 222222211 01111222221111111 0001111111111 11122334567777778 99
Q ss_pred ccChhhHHHHhcccCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----------C------Cchh
Q 046354 290 QLDVNSARLAFERLEAKDV-------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-----------P------DEIT 345 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------p------~~~~ 345 (510)
.|+++.|+.+|++..+-+- .+|..-...=.++.+++.|++++++....--+ + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999887322 35555566667788999999988876542111 1 1122
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCcHH-HHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHV-VLGALLGAC 422 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~~~~ 422 (510)
|...++.-...|-++....+++++.+. .+ -+|.+.-..+..+....-++++.+++++-... .|+.. .|+..+..+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 444445455667888888899988875 22 24444445555666777899999999998876 45544 888888776
Q ss_pred Hhh---CCHHHHHHHHHHHHhcCCCC-chh-HHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 423 RLH---GDVRMADYIGERLIELQPSS-SGA-YVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 423 ~~~---~~~~~A~~~~~~~~~~~p~~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
.+. ...+.|..+|+++++..|.. ..+ |...+..-.+-|.-..|++++++...+++
T Consensus 558 i~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 553 47899999999999877732 222 55556666667888889999988764433
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1.8e-11 Score=107.82 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...+..+...+ ...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 31 ~~~~~~la~~~-----~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGY-----LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 34555566666 889999999999998765 345678888899999999999999999998863 445567777
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGD 427 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 427 (510)
+...+...|++++|.+.++...+....+.....+..+...+...|++++|...+.+..+..| +...+..+...+...|+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 88888999999999999999987412223455677788899999999999999999886666 45678888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+++|...++++.+..|.++..+..++.++...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998888888888889999999999999999988776
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-09 Score=100.38 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 215 (510)
+......-.+-+-..+++++..++.+... +++...+..-|.++.+.|+..+-..+=.++.+ | ...+|-++..-|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 44455555566667778888888877776 45555666667778888877766666555555 3 457788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhh
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 295 (510)
...|+.++|.+.|.+..... +.-...|-...+.| +-.|.-++
T Consensus 323 l~i~k~seARry~SKat~lD---------------------------------~~fgpaWl~fghsf-----a~e~EhdQ 364 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD---------------------------------PTFGPAWLAFGHSF-----AGEGEHDQ 364 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC---------------------------------ccccHHHHHHhHHh-----hhcchHHH
Confidence 88889999998888764321 11223344555555 66777777
Q ss_pred HHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 296 ARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 296 a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|...+....+ +. .-.+--+..-|.+.++..-|.+.|.+.... .|-|+...+-+.-..-..+.+.+|..+|+.....
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 7776655443 11 112223344578889999999999988764 3555667777666666788999999999988732
Q ss_pred hC-CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 373 YG-FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 373 ~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.. +.+ -..+++.|..+|.+.+++++|+..+++.....| +..++.++.-.|...|+++.|...|.+++.+.|++.
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 11 111 234578899999999999999999999887766 888999999999999999999999999999999997
Q ss_pred hhHHHHHHHH
Q 046354 447 GAYVLSANVH 456 (510)
Q Consensus 447 ~~~~~l~~~~ 456 (510)
.+-..|..+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.4e-10 Score=101.84 Aligned_cols=152 Identities=15% Similarity=0.092 Sum_probs=128.3
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 396 (510)
+.-.|+.-.|..-|+..++....++ ..|..+...|....+.++..+.|+...+ +.| ++.+|..-..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHH
Confidence 4557888899999999888643332 2277777788899999999999999875 344 7888888888888889999
Q ss_pred HHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 397 EAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 397 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|..-|++..+..| +...|-.+..+..+.+.+.+++..|++.++..|+.+..|...+.++..++++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999998888 566888888888888999999999999999999999999999999999999999999999766
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.8e-10 Score=96.29 Aligned_cols=224 Identities=13% Similarity=-0.009 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
+.+..+|.+.|.+.+|.+.++.-.... |-..||..+-..+ .
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY-------------------------------------~ 267 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVY-------------------------------------Q 267 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHH-------------------------------------H
Confidence 566777777777777777777766643 3334444444433 5
Q ss_pred cccChhhHHHHhcccCC--CChhh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--KDVVS-WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
+..+...|..+|.+..+ |..++ ..-+...+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.+
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHH
Confidence 55566667776666655 33333 3345566777789999999999998863 55666777777888889999999999
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ER--DHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
++++.+- |+ .++..|+.+.-+|.-.+++|-++.-|++.... .| -..+|-.+.......||+..|.+.|+-.+..
T Consensus 347 YRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999986 64 46788888988888999999999888877643 45 3558888888888999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+|++...+..|+-+-.+.|+.++|..+++..+.
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999999999999999999999999998873
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.5e-12 Score=80.65 Aligned_cols=50 Identities=30% Similarity=0.522 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-09 Score=92.25 Aligned_cols=280 Identities=11% Similarity=0.098 Sum_probs=195.6
Q ss_pred CChhhHHHHHHhhccCChhh---HHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHH
Q 046354 72 GRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148 (510)
Q Consensus 72 ~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 148 (510)
++.++|.+.|-+|.+.|..| --+|.+.|-+.|..+.|+++.+.+.+. ||. |+..-+ .+...
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdl-T~~qr~--------------lAl~q 112 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDL-TFEQRL--------------LALQQ 112 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCC-chHHHH--------------HHHHH
Confidence 67788888888887655544 446777788888888888888777664 443 222222 22334
Q ss_pred HHHHHHhcCchHHHHHHHhhCCC-C--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHh
Q 046354 149 MCTGLERNAMTKLAREYFVQMPN-K--DIVAWNAMITAYVDAGNMAQASELFNLMPQRNV--------WTWNAMIDRYAR 217 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~ 217 (510)
+.+-|...|-++.|+++|....+ | -......|+..|-...+|++|+++-+++.+.+. ..|..+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 56667788888888888888874 2 234567789999999999999999887665222 346666677777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHH
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 297 (510)
..+.+.|..++.+..+.. |+
T Consensus 193 ~~~~d~A~~~l~kAlqa~--~~---------------------------------------------------------- 212 (389)
T COG2956 193 SSDVDRARELLKKALQAD--KK---------------------------------------------------------- 212 (389)
T ss_pred hhhHHHHHHHHHHHHhhC--cc----------------------------------------------------------
Confidence 788888888888876532 11
Q ss_pred HHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
.+..--.+...+...|++++|.+.|+...+.+..--+.+...|..+|...|+.++...++..+.+. .+
T Consensus 213 ---------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~ 280 (389)
T COG2956 213 ---------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NT 280 (389)
T ss_pred ---------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cC
Confidence 111122334566778899999999988888654444557777888899999999999998888764 45
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh---hCCHHHHHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL---HGDVRMADYIGERLI 439 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 439 (510)
.+..-..+.+.-....-.+.|...+.+-...+|+...+..|+..... .|..++....+..|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55555566665555566677776666655578999999988887543 345667777777776
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=5.2e-09 Score=92.20 Aligned_cols=270 Identities=13% Similarity=0.082 Sum_probs=161.1
Q ss_pred cCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhccC----ChhhHHHHHHHHHcCCChHHHHHHH
Q 046354 38 NHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLF 112 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 112 (510)
.|++.+|+++..+..+..+.+ ..|..-+.+.-+.|+.+.+-+++.+.-++ +...+-+..+.....|+...|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 677777777777766654433 23444456666777777777777777442 3345566667777777777777777
Q ss_pred HhccccCC-ChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC-----------CChhHHHHH
Q 046354 113 DRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-----------KDIVAWNAM 180 (510)
Q Consensus 113 ~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l 180 (510)
+++.+..| +....... .++|.+.|++.....++..+.+ -...+|..+
T Consensus 177 ~~ll~~~pr~~~vlrLa---------------------~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 177 DQLLEMTPRHPEVLRLA---------------------LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHhCcCChHHHHHH---------------------HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 77766533 33333333 3344444444445555444431 112467777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 257 (510)
++-....+..+.-...++..+. .++..-..++.-+.+.|+.++|.++.++..+++..|+-.+ ++..
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~~~-------- 304 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LIPR-------- 304 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HHhh--------
Confidence 7777667777776777777765 4677777888889999999999999999888776666221 1111
Q ss_pred HHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC---CCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE---AKDVVSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
.+.++...-++..++-. ..++..+.+|...|.+++.+.+|...|+..
T Consensus 305 ------------------------------l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 305 ------------------------------LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred ------------------------------cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222222222211111 123345555666666666666666666655
Q ss_pred HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 335 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
.+ ..|+..+|..+.+++.+.|+...|.+..++...
T Consensus 355 l~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 355 LK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44 356666666666666666666666666655553
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.6e-08 Score=89.38 Aligned_cols=269 Identities=12% Similarity=0.035 Sum_probs=168.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.|+.....+..++...|+.++|...|++....|+. ........+.+.|+++....+...+.. .+..|-...+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~----~~~~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA----KVKYTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh----hhhcchhhhh
Confidence 456667777777777777777777777776653322 233334445667777777776666633 2222222222
Q ss_pred HHhhhhhhhhHH-HHH-HHHhCCCcchh---hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHH
Q 046354 248 TSCEGMLENMLA-HAL-AIRLGFEQETS---LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYS 319 (510)
Q Consensus 248 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 319 (510)
.+.+-....... .++ .....+..++. .+-.-...+ ...|+.++|.-.|+.... .+...|.-|+.+|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL-----~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL-----IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH-----HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 111111111000 000 01111111111 111122223 567788888888876654 35678899999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCchhHHHHH-HhcC-cCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChH
Q 046354 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVL-SDCS-HAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVK 396 (510)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 396 (510)
..|++.+|.-+-+...+. ++.+..+.+.+. ..|. ....-++|.+++++..+ +.|+ ....+.+.+.+...|+.+
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccc
Confidence 999999888877766654 455556665552 2332 33445778888877663 3554 445567788888899999
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
+++.++++.....||....+.|...+...+.+.+|+..|..++.++|++-.+...+
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999988887788888888888888888999999999999999999886444433
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-08 Score=96.98 Aligned_cols=409 Identities=11% Similarity=0.047 Sum_probs=233.2
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccC--CChhhHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLG 131 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~ll~~ 131 (510)
|..+|..|.-++...|++..+-+.|++... .....|+.+...|...|.-..|..+++.-.... |+..+--.++..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 566666666677777777777777777643 344567777777777777777777777665543 333332222222
Q ss_pred -HH-hcCCcchh------------------hHHHHHHHHHHHHhc-----------CchHHHHHHHhhCC---CCChhHH
Q 046354 132 -CA-HNGLIAKL------------------EVISWTTMCTGLERN-----------AMTKLAREYFVQMP---NKDIVAW 177 (510)
Q Consensus 132 -~~-~~~~~~~a------------------~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~---~~~~~~~ 177 (510)
|. +.+..+++ .+..+..+.-+|... ....++.+.+++.. +.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 22 22333333 223333333333211 12345556666654 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEG 252 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 252 (510)
.-+.--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+...+. |.....-....-|.. .
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~--~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL--T 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh--h
Confidence 4444557788888888888777654 56788888888888899999998888776542 210000000000000 0
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhcc-ccccccccChhhHHHHhcccCC-----C-ChhhHHHHHHHHHhcCChh
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYV-FWDWGFQLDVNSARLAFERLEA-----K-DVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~ 325 (510)
+.+.. ....+...++..+- .......++-...++....+.- . .+.++.-+..-....+.
T Consensus 560 ~~~~e------------~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~-- 625 (799)
T KOG4162|consen 560 FNDRE------------EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK-- 625 (799)
T ss_pred cccHH------------HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh--
Confidence 00000 00000000000000 0000111111222222222211 1 11222222222211111
Q ss_pred hHHHHHHHHHHcCCCCCch--------hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 326 QVFRLFARMLKSGTKPDEI--------TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~--------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
.+..-.. |...-+.|... .|......+...+..++|...+.+..+ -.+.....|......+...|.+++
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 0000000 22222222222 234455667788888999888888775 334467777777888899999999
Q ss_pred HHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADY--IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 398 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
|.+.|.......|+ ..+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|...|+...+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999888885 5588899999999999888888 99999999999999999999999999999999999998874
Q ss_pred hhccccceeE
Q 046354 475 RVKKVASFSQ 484 (510)
Q Consensus 475 ~~~~~p~~~~ 484 (510)
--...|-..|
T Consensus 783 Le~S~PV~pF 792 (799)
T KOG4162|consen 783 LEESNPVLPF 792 (799)
T ss_pred hccCCCcccc
Confidence 4444444444
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=3.7e-10 Score=106.37 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ----------RNVW-TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 243 (510)
.+...+...|...|+++.|+.++....+ |.+. ..+.+...|...+++++|..+|+++...-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~-------- 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR-------- 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------
Confidence 3555577888888888888888876653 2222 23446677888888888888888875410
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 046354 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323 (510)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (510)
+.+|......-..+++.|..+|.+.|+
T Consensus 272 -----------------------------------------------------e~~~G~~h~~va~~l~nLa~ly~~~GK 298 (508)
T KOG1840|consen 272 -----------------------------------------------------EEVFGEDHPAVAATLNNLAVLYYKQGK 298 (508)
T ss_pred -----------------------------------------------------HHhcCCCCHHHHHHHHHHHHHHhccCC
Confidence 000000001112345666666777777
Q ss_pred hhhHHHHHHHHHH-----cCC-CCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC------CcchhHhHHhHHh
Q 046354 324 GFQVFRLFARMLK-----SGT-KPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP------RAEHYSCLADILR 390 (510)
Q Consensus 324 ~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 390 (510)
+++|..++++..+ .|. .|.. .-++.+...|+..+.+++|..+++...+.+.-.| ...+++.|...|.
T Consensus 299 f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 299 FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 7776666655432 121 2222 2456667778889999999998887766533122 2467889999999
Q ss_pred hcCChHHHHHHHhhCCCC--------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH----hcCCCCchh---HHHHHH
Q 046354 391 RAGQVKEAMRVVSKMPPH--------ER-DHVVLGALLGACRLHGDVRMADYIGERLI----ELQPSSSGA---YVLSAN 454 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~--------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~---~~~l~~ 454 (510)
..|++++|.++++++... .+ ....++.+...|.+.+++.+|.++|.+.+ ...|++|.+ |..|+.
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 999999999999877532 22 24467888899999999999999999887 445655444 888999
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 046354 455 VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~ 473 (510)
+|...|++++|.++.+.+.
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 9999999999999999887
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=7.1e-10 Score=109.60 Aligned_cols=258 Identities=12% Similarity=-0.021 Sum_probs=171.9
Q ss_pred CCChhHHHHHHHHHH-----hcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 046354 171 NKDIVAWNAMITAYV-----DAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYA---------RNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 171 ~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~ 233 (510)
..+...|...+.+-. ..++.++|...|++..+ |+ ...|..+..++. ..+++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445555555554421 12457888888888776 43 345555554443 22447888888888876
Q ss_pred CCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-Chhh
Q 046354 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVS 310 (510)
Q Consensus 234 ~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 310 (510)
. .|+... .+..+...+ ...|++++|...|++..+ | +...
T Consensus 333 l--dP~~~~-------------------------------a~~~lg~~~-----~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 333 L--DHNNPQ-------------------------------ALGLLGLIN-----TIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred c--CCCCHH-------------------------------HHHHHHHHH-----HHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 3 343222 222222233 667888888888888765 3 3557
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADI 388 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 388 (510)
|..+...+...|++++|...+++..+. .|+.. .+..++..+...|++++|...++++.+. .+| ++..+..+..+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~ 450 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHH
Confidence 888888999999999999999999885 45533 3333444456678999999999998764 234 45557778888
Q ss_pred HhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+...|++++|...+.++....|+.. ..+.+...|...| +.|...++++.+..-..+.....+..+|.-.|+-+.+..
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHH
Confidence 9999999999999999876666544 4455555667666 477777777764332222222336667788888888777
Q ss_pred HHHHHH
Q 046354 468 VRKKME 473 (510)
Q Consensus 468 ~~~~~~ 473 (510)
+ +++.
T Consensus 529 ~-~~~~ 533 (553)
T PRK12370 529 W-NKFK 533 (553)
T ss_pred H-HHhh
Confidence 7 7666
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=5.8e-08 Score=90.86 Aligned_cols=395 Identities=13% Similarity=0.056 Sum_probs=202.4
Q ss_pred hcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHHHHHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHH
Q 046354 37 RNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLF 112 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 112 (510)
..+++..-+.+.+.+.+..|. ..+....--.+...|+-++|.......... +.++|+.+.-.+-...++++|+..|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444443331 222222222333445555555555554432 2234554444444445555555555
Q ss_pred Hhcccc-CCChhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCC
Q 046354 113 DRMPLK-LKNVVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP-----NKD 173 (510)
Q Consensus 113 ~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~ 173 (510)
...... +.|...|.-+--.-+..++++.. ....|..++.++.-.|+...|..+++... .|+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 555444 22233333222222222222222 33344555555666677777777776655 355
Q ss_pred hhHHHHH------HHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046354 174 IVAWNAM------ITAYVDAGNMAQASELFNLMPQ--RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244 (510)
Q Consensus 174 ~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 244 (510)
...+... .....+.|..++|.+.+..... -|- ..-..-...+.+.++.++|..++..++. ..||..-|.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy 256 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHH
Confidence 5554432 2456778999999988877765 232 2334556678899999999999999987 458888777
Q ss_pred HHHHHhhh-hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHh
Q 046354 245 SILTSCEG-MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSN 320 (510)
Q Consensus 245 ~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 320 (510)
..+..+.. ........ ..+|....+ .....-..=+....-
T Consensus 257 ~~l~~~lgk~~d~~~~l------------------------------------k~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEAL------------------------------------KALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHHHhhhHHHH------------------------------------HHHHHHHhhcCcccccchhccHHHhCc
Confidence 76665531 21111111 011211111 000000000000101
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH----HHHHHHHHHHhhC----------CCCCcchh--Hh
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK----GRKTFNLMSRAYG----------FKPRAEHY--SC 384 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~----------~~~~~~~~--~~ 384 (510)
..-.+..-+++..+.+.|+++-...+.++ +-.....+- +..+...+... | -+|+...| -.
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHH
Confidence 11233344555666666665543333333 222111111 11111111110 1 03333333 34
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
++..+-+.|+++.|...++......|+.. .|..-...+...|+.++|..+++++.+++..+...-..-+.-..++.+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 66677778888888888888776777544 44444556667778888888888887777666444445666677777777
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|.++.....
T Consensus 457 eA~~~~skFT 466 (700)
T KOG1156|consen 457 EAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhh
Confidence 7777776665
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.7e-08 Score=85.17 Aligned_cols=277 Identities=11% Similarity=-0.017 Sum_probs=195.3
Q ss_pred HhcCCHHHHHHHHhhC--CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHhhhhhh
Q 046354 185 VDAGNMAQASELFNLM--PQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET----TCTSILTSCEGMLE 255 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~--~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~ 255 (510)
+..++-..|...+-.+ .. .|+.....+...+...|+.++|...|++.+. +.|+.. .|..++..-++..+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhh
Confidence 3345544444444332 22 5778889999999999999999999999866 445443 46666665444444
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh---hHHHHHHHHHhcCChhhHHHHHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV---SWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
............-.....++.. +... -..++++.|..+-++..+.+.. .|-.-...+...|++++|.-.|+
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~-~~~l-----~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVH-AQLL-----YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhh-hhhh-----hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 4443333333221111112211 1122 4467788888888887774443 33333456788999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH-hHHhh-cCChHHHHHHHhhCCCCCC
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA-DILRR-AGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~p 410 (510)
...... +.+-.+|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+. ..+.- ..--++|.+++++.....|
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 988742 456679999999999999999999888887763 455666555442 33322 2235889999999998888
Q ss_pred cHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+-. ..+.+..-|...|..+.++.++++.+...|+. ..+..|+.++...+.+.+|...|....
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 644 66777788889999999999999999998886 689999999999999999999988665
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.4e-11 Score=76.77 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999999874
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=1.3e-08 Score=98.22 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=165.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 99 (510)
.||..+|.++|.-|+..|+.+.|- +|.-|.-. ..+...++.++....+.|+.+.+. +|...+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 799999999999999999999998 77776543 447788999999988999888877 78899999999999
Q ss_pred HcCCChHH---HHHHHHhcccc-CCC---hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 100 FKARQVDE---GRRLFDRMPLK-LKN---VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 100 ~~~g~~~~---A~~~~~~m~~~-~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
...||+.. ..+.++.+... .+. ...-..++...+.-+....+ ...+....-.|-++.+.+++..++
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-----~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-----ENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH-----HHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99999765 33322223222 111 11111112211222222222 223334445667788888887776
Q ss_pred CCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAG-NMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
..+. ....+++-+.... .+++-........+ +++.+|.+++..-..+|+.+.|..++.+|++.|++.+.+.|..++-
T Consensus 169 a~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 1111 1111233333322 34444444444444 8999999999999999999999999999999999999998888888
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhc
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (510)
+..+......+..-+...|+.|+..++...+...
T Consensus 248 g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 248 GINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred cCccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 7655555566666667778888777666555544
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.4e-07 Score=81.86 Aligned_cols=439 Identities=13% Similarity=0.027 Sum_probs=230.8
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCChh-HHHH-HHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNIV-AESA-MIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVD 106 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~-li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 106 (510)
+.-+...+++..|+.+++--...+...+ ..+. +..++.+.|++++|..++.-+.+ ++...+-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 5556678888888888877665432222 2333 34566788889988888887744 45556666666666678888
Q ss_pred HHHHHHHhccccCCChhhHHHHH-HHHHhcCCcchh---------hHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCCh
Q 046354 107 EGRRLFDRMPLKLKNVVSWTTVV-LGCAHNGLIAKL---------EVISWTTMCTGLERNAMTKLAREYFVQMP--NKDI 174 (510)
Q Consensus 107 ~A~~~~~~m~~~~~~~~~~~~ll-~~~~~~~~~~~a---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~ 174 (510)
+|..+-.+.. +....+.++ ....+.++-.+. ...--..++...-..-.+++|++++.... .|+-
T Consensus 109 eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8888776663 333333222 222233332221 11111122223333334555555555554 2222
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-
Q 046354 175 VAWNAM-ITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS- 249 (510)
Q Consensus 175 ~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~- 249 (510)
...|.. .-+|.+..-++-+.+++.-..+ || +..-|..+....+.=+-.-|.+-.+++.+.+-.--. -..-++..
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcC
Confidence 222222 2234444444444444443322 22 233344443333332222333333333332211000 00000000
Q ss_pred ---hhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC---
Q 046354 250 ---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--- 323 (510)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 323 (510)
...-....++. ..-...-+...-.++-.| .+.+++.+|..+.+++...++.-|-.-.-.++..|+
T Consensus 264 LVvFrngEgALqVL----P~L~~~IPEARlNL~iYy-----L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 264 LVVFRNGEGALQVL----PSLMKHIPEARLNLIIYY-----LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred eEEEeCCccHHHhc----hHHHhhChHhhhhheeee-----cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 00000000000 000011112223344444 899999999999988876554433332223333332
Q ss_pred ----hhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 324 ----GFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 324 ----~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
..-|.+.|+-.-+.+...|.. .--++..++.-..++++.+.+++.+..- -...|... -.+..+++..|++.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHH
Confidence 444666665554555444433 2233344444556788888888888763 33333333 4588999999999999
Q ss_pred HHHHhhCCCCC-CcHHHHHH-HHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 399 MRVVSKMPPHE-RDHVVLGA-LLGACRLHGDVRMADYIGERLIELQPSSSGA-YVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 399 ~~~~~~~~~~~-p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+++|-.+...+ .|..+|.+ |..+|.+.+.++.|+.++-++ ..|..... .-..++.|.+++++=-|.+.|+.+. .
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE-~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE-I 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-c
Confidence 99998887332 25556655 455678889999998887653 22332222 4456677999999999999998776 2
Q ss_pred hccccceeEEEeCCe
Q 046354 476 VKKVASFSQIEVKGK 490 (510)
Q Consensus 476 ~~~~p~~~~~~~~~~ 490 (510)
..+.|.. |-+-+|.
T Consensus 490 lDP~pEn-WeGKRGA 503 (557)
T KOG3785|consen 490 LDPTPEN-WEGKRGA 503 (557)
T ss_pred cCCCccc-cCCccch
Confidence 3445554 6665543
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1.6e-09 Score=95.30 Aligned_cols=199 Identities=18% Similarity=0.124 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...+..+...+...|++++|...+++..+.. |+.. ..+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~-------------------------------~~~~~la~~~-- 75 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDY-------------------------------LAYLALALYY-- 75 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccH-------------------------------HHHHHHHHHH--
Confidence 3456666667777777777777777665432 2211 1122222333
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 360 (510)
...|++++|...+++... .+...+..+...+...|++++|...+++.......| ....+..+...+...|+++
T Consensus 76 ---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 76 ---QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred ---HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 666777777777766654 344567778888999999999999999998743222 3346667778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...+++..+. .+.+...+..+...+...|++++|...+++.....| +...+..+...+...|+.++|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999874 334567788899999999999999999998765544 55667777788888999999999988877
Q ss_pred hcCC
Q 046354 440 ELQP 443 (510)
Q Consensus 440 ~~~p 443 (510)
...|
T Consensus 231 ~~~~ 234 (234)
T TIGR02521 231 KLFP 234 (234)
T ss_pred hhCc
Confidence 6544
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.7e-10 Score=96.42 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=189.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE 255 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 255 (510)
+.+..+|.+.|-+.+|.+.|+...+ |-+.||-.|-.+|.+..+++.|+.++.+-.+ ..|-.+||..-+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi----- 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI----- 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH-----
Confidence 6788999999999999999887765 7888898999999999999999999988876 567777765544321
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+ -..++.++|.++++...+ .++.+..++...|.-.++++-|+.+|+
T Consensus 300 --------------------------~-----eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 300 --------------------------H-----EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred --------------------------H-----HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence 1 344677888888887766 355666677788889999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
++.+.|+ -++..|+.+.-+|.-.++++.++.-|++.... --.|+ ..+|-.+.....-.|++.-|.+.|+-....+|
T Consensus 349 RiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 9999995 46678888888888999999999999998875 44454 46788888888899999999999999886777
Q ss_pred -cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 411 -DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 411 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....++.|.-.-.+.|+.++|..+++.+....|+-...
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 45689999988899999999999999999888875444
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=6.5e-08 Score=90.54 Aligned_cols=425 Identities=11% Similarity=0.090 Sum_probs=218.0
Q ss_pred ccCCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+...|+-++|......... .+.+.|..+.-.+....++++|+..|..+....| |...+..|.-.=++.|+++....
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3456777777777666653 3456677666666667788888888888777766 45566655555566777777776
Q ss_pred HHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 046354 80 VFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153 (510)
Q Consensus 80 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~ 153 (510)
.-....+ .....|..++.++.-.|+...|..+++...+. .|+...+.-.... .--....
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~---------------Ly~n~i~ 195 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL---------------LYQNQIL 195 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH---------------HHHHHHH
Confidence 6666644 23356777777777888888888888877765 3444443322211 1123345
Q ss_pred HhcCchHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHH-hcCChHHHH-H
Q 046354 154 ERNAMTKLAREYFVQMPN--KD-IVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYA-RNGPEGAAM-K 226 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~-~~~~~~~A~-~ 226 (510)
...|..+.|.+.+..-.+ -| ...-..-...+.+.+++++|..++..+.. ||..-|+.....+. +-.+.-+++ .
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567777888777765541 11 12223445678888999999999998877 66666655554433 333334444 5
Q ss_pred HHHHHHHCC---CCCCHhhHHHHHHHhhhhh-hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 227 LLNLMFQSR---FMPNETTCTSILTSCEGML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 227 ~~~~m~~~g---~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|....+.- -.|-....+.+ .. .++. ..........+.|+++-... +...| +.
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl-~~-eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLy------------------k~ 332 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVL-NG-EELKEIVDKYLRPLLSKGVPSVFKD---LRSLY------------------KD 332 (700)
T ss_pred HHHHHhhcCcccccchhccHHHh-Cc-chhHHHHHHHHHHHhhcCCCchhhh---hHHHH------------------hc
Confidence 555554321 11111111111 00 0000 00011111122222221111 11111 00
Q ss_pred cCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-c
Q 046354 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-A 379 (510)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 379 (510)
++ .......++..|...-.........+.-. --+|+.. ++..++..+-..|+++.|..+++.... ..|+ +
T Consensus 333 -p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~--~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTli 405 (700)
T KOG1156|consen 333 -PE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGK--QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLI 405 (700)
T ss_pred -hh-HhHHHHHHHHHHHhhcccccCCCcccccc--cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHH
Confidence 00 00011111111111111110000000000 0134443 333455556667777777777776663 2443 3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-------H--
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-------Y-- 449 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~-- 449 (510)
+.|..=.+.+...|.+++|..++++..+. .||...-.--..-..+.++.++|..+....-+...+.... |
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 44555556666677777777777766655 3344443344555556667777776666654333211000 2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..-+.+|.++|++..|++-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 223445667777777766666555
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=5.7e-10 Score=90.82 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADIL 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 389 (510)
..-+.-.|.+.|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+.|+...+. .| +..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHHH
Confidence 4456677888888888888888888863 334457888888888888888888888888753 44 667788888888
Q ss_pred hhcCChHHHHHHHhhCCCCC--C-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHE--R-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
|..|++++|...|++....+ | -..+|..+..+..+.|+.+.|...|++.++++|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88889999988888876331 1 34578888888888888899999999998888988888888888888889988888
Q ss_pred HHHHHHHH
Q 046354 467 QVRKKMER 474 (510)
Q Consensus 467 ~~~~~~~~ 474 (510)
.++++...
T Consensus 194 ~~~~~~~~ 201 (250)
T COG3063 194 LYLERYQQ 201 (250)
T ss_pred HHHHHHHh
Confidence 88887773
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=4.6e-09 Score=103.90 Aligned_cols=241 Identities=13% Similarity=0.039 Sum_probs=173.0
Q ss_pred CChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhh
Q 046354 203 RNVWTWNAMIDRYAR-----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK 277 (510)
Q Consensus 203 ~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (510)
.+...|...+.+-.. .+++++|...|++..+ ..|+.......+..+.... ...+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~---------~~~g---------- 312 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSM---------AQMG---------- 312 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHH---------HHcC----------
Confidence 555656655555322 2346799999999977 5566544333332210000 0000
Q ss_pred hhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC
Q 046354 278 CTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354 (510)
Q Consensus 278 l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 354 (510)
.. ...+++++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+...+.
T Consensus 313 ---~~-----~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 313 ---IF-----DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLF 383 (553)
T ss_pred ---Cc-----ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 00 345678899999988876 356688888888999999999999999999863 334557778888899
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCC-CC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPH-ER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
..|++++|...++++.+. .|+ +..+..++..+...|++++|...+++.... .| ++..+..+...+...|+.++|
T Consensus 384 ~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 384 MAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999864 554 333344455567789999999999987644 35 344567778888899999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
...++++....|.+......++..|...| ++|...++.+.+....
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 99999988888887777888888888888 4888888887744443
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.5e-08 Score=86.43 Aligned_cols=380 Identities=13% Similarity=0.068 Sum_probs=212.5
Q ss_pred CCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhhHHHHHHhcccc-CCChhHHHHHHHHHHhcCChhhHH
Q 046354 6 CTGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
...++..|+.+++.-.. .+...| +...+.+.|++++|..+++.+... .|+...+-.|.-++.-.|.+.+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 45677888888876652 122223 445567888888888888876543 566666666666666677777777
Q ss_pred HHHHhhccC-----------------------------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHH
Q 046354 79 KVFDEIYEG-----------------------------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129 (510)
Q Consensus 79 ~~~~~~~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll 129 (510)
.+..+..+. ...--.+|.+..-..-++.+|++++.+.....|+-...|..+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 776665331 111122333333333466777777777776555544444433
Q ss_pred HHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC-hhHHHHHHHHHHh--cCC---------------
Q 046354 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKD-IVAWNAMITAYVD--AGN--------------- 189 (510)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~--~g~--------------- 189 (510)
..| |.+..-++.+.++++--. -|| ....|.......+ .|+
T Consensus 192 ALC--------------------yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 192 ALC--------------------YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHH--------------------HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 332 223333333333322211 121 1122222111111 111
Q ss_pred ------------------HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 190 ------------------MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 190 ------------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
-+.|++++-.+.+.-+..--.|+--|.+.++..+|..+.+++.. ..|-......+..+..
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 12233333222221223333455567788888888888877622 3343333333333221
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhcCChhh
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNHGHGFQ 326 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~ 326 (510)
.... +....+.-|.+.|.-... .++.--.++...+.-..++++
T Consensus 330 ---------------------------GQe~-----gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 330 ---------------------------GQET-----GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred ---------------------------hhhc-----CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 1111 233344556666654443 122234556666666778888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 327 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
++-.++.....=...|...| .+.++.+..|++.+|.++|-.+... .++.+..-...|.++|.+.++++-|.+++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 88888887775333333333 4678888889999999988777643 333333333567788899999999998887776
Q ss_pred CCCC-cHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 407 PHER-DHVVL-GALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 407 ~~~p-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.| +..+. ..+..-|.+.+.+--|-+.|..+-.++|..
T Consensus 456 --t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 --TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 33333 334456888888888888888887777764
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=7.7e-08 Score=92.14 Aligned_cols=255 Identities=16% Similarity=0.106 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
++..+...|-..|++++|++.+++..+ |+ +..|..-...+-+.|++.+|.+.++..+... +.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~------------- 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LA------------- 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hh-------------
Confidence 446667888899999999999998876 44 5678888899999999999999999887632 22
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh----------hH--HHHHHHHHh
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV----------SW--TAMILAYSN 320 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~ 320 (510)
|..+-+..+..+ .++|++++|..++.....++.. .| .-...+|.+
T Consensus 261 ------------------DRyiNsK~aKy~-----LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 261 ------------------DRYINSKCAKYL-----LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred ------------------hHHHHHHHHHHH-----HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 222222333333 8889999999998877764421 22 335678999
Q ss_pred cCChhhHHHHHHHHHHc--CC---CCCch----------hHHHHHHhcCcCC---c----HHHHHHHHHHHHHhhCCCCC
Q 046354 321 HGHGFQVFRLFARMLKS--GT---KPDEI----------TFVGVLSDCSHAG---L----VEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~--g~---~p~~~----------~~~~li~~~~~~g---~----~~~a~~~~~~~~~~~~~~~~ 378 (510)
.|++..|++-|....+. .+ +-|-+ +|..+++..-+.. . ...|.+++-.+.........
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999998877666543 11 22222 3333333221111 1 13344555444432100000
Q ss_pred cch-----------hHhHHhHH---hhcCChHHHHHHHhh-----------CCC---CCCcHHHHHHHHHHHHhh-CCHH
Q 046354 379 AEH-----------YSCLADIL---RRAGQVKEAMRVVSK-----------MPP---HERDHVVLGALLGACRLH-GDVR 429 (510)
Q Consensus 379 ~~~-----------~~~l~~~~---~~~g~~~~A~~~~~~-----------~~~---~~p~~~~~~~l~~~~~~~-~~~~ 429 (510)
... -..+..-. .+...-+++...-.+ ... ...|.... ...+.+. .-.+
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~---GekL~~t~dPLe 474 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL---GEKLLKTEDPLE 474 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc---HHHHhcCCcHHH
Confidence 000 00000000 001111111111100 000 01122211 1222333 4668
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
+|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 475 ~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 475 EAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999887754
No 77
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=2.3e-08 Score=96.62 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
+++.+|.+++..-...|+.+.|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|... |+.|+..|+...
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 78889999999999999999999999999999999999988888765 77788888888888877 999999998776
Q ss_pred HhHHhhcCC
Q 046354 386 ADILRRAGQ 394 (510)
Q Consensus 386 ~~~~~~~g~ 394 (510)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666665444
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.1e-08 Score=90.74 Aligned_cols=426 Identities=13% Similarity=0.014 Sum_probs=258.2
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~ 79 (510)
....|+++.|+..|-+.. ++|...|+.-..+|+..|++++|++--.+-.+..|+. ..|+..-.++.-.|++++|..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 456899999999999886 5677888888899999999999999988888888875 578889999999999999999
Q ss_pred HHHhhccC---ChhhHHHHHHHHHcCC---ChHHHHHHHHhcccc-----CCChhhHHHHHHHHHhcCCcchhhHHHHHH
Q 046354 80 VFDEIYEG---NVYSWTSLISGYFKAR---QVDEGRRLFDRMPLK-----LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148 (510)
Q Consensus 80 ~~~~~~~~---~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 148 (510)
-|.+-++. |...++.|..++.... +.-.--.++..+... ......|..++..+-+...--...-. ...
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPR 170 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHH
Confidence 99998663 4456777777772110 000000111111111 00011222233222111100000000 001
Q ss_pred HHHHHHhcCchHHH-HHHHhh-----CCCC---------C-------------hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046354 149 MCTGLERNAMTKLA-REYFVQ-----MPNK---------D-------------IVAWNAMITAYVDAGNMAQASELFNLM 200 (510)
Q Consensus 149 l~~~~~~~~~~~~a-~~~~~~-----~~~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~ 200 (510)
++.+.......+.- ...-.. +..| . ..-...+.+...+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111110000000 000000 0001 0 112455777778888888898888877
Q ss_pred CC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhh
Q 046354 201 PQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC 278 (510)
Q Consensus 201 ~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 278 (510)
.+ .++.-++....+|...|.+.++...-.+..+.|... ..-|+.+-.++. .+
T Consensus 251 ~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~-------------------------r~ 304 (539)
T KOG0548|consen 251 LELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALA-------------------------RL 304 (539)
T ss_pred HhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHH-------------------------Hh
Confidence 66 344446677778888888887777766666655221 122222222211 12
Q ss_pred hhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCC
Q 046354 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAG 357 (510)
Q Consensus 279 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g 357 (510)
...| .+.++++.+...|.+...+... -+...+....+++.+......- +.|... -...-...+.+.|
T Consensus 305 g~a~-----~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAY-----TKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhh-----hhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 3344 6778888888888775442111 1122233445555555554443 233331 1222255677889
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
++..|...+.++++. .+-|...|..-.-+|.+.|.+..|++-.+...+..|+ ...|..=..++....+++.|.+.|+
T Consensus 373 dy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 3557889999999999999999999988888877664 4466666667777789999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+.++++|++......+..++..........++.+
T Consensus 451 eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999999987777777776665333333444433
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=3.7e-09 Score=94.16 Aligned_cols=251 Identities=10% Similarity=0.018 Sum_probs=161.9
Q ss_pred HHhcCchHHHHHHHhhCC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 153 LERNAMTKLAREYFVQMP-NK--DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
+.-.|++..++.-.+.-. .+ +......+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-++
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~ 90 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELK 90 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677777764443111 11 233455667888888888876665555455666666555555544345556655555
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh
Q 046354 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 309 (510)
+....+..++..++. ++.+ ..+ ...|++++|.+++... .+..
T Consensus 91 ~~~~~~~~~~~~~~~-~~~A------------------------------~i~-----~~~~~~~~AL~~l~~~--~~lE 132 (290)
T PF04733_consen 91 ELLADQAGESNEIVQ-LLAA------------------------------TIL-----FHEGDYEEALKLLHKG--GSLE 132 (290)
T ss_dssp HCCCTS---CHHHHH-HHHH------------------------------HHH-----CCCCHHHHHHCCCTTT--TCHH
T ss_pred HHHHhccccccHHHH-HHHH------------------------------HHH-----HHcCCHHHHHHHHHcc--Cccc
Confidence 544333332222222 2211 122 7789999999988876 4566
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC----cCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS----HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
.....+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ....+..|..+|+++.+ ...+++.+.+.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~ 207 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHH
Confidence 7777888999999999999999999864 334 44444544432 23468899999999876 456788888888
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCCc
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV-RMADYIGERLIELQPSSS 446 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 446 (510)
+.+....|++++|.+++.+..+..| ++.+...++......|+. +.+.+.++++....|+++
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8899999999999999988876766 566777777777777777 677888888888888875
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=1.4e-08 Score=95.88 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=173.8
Q ss_pred HhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----------CCChhH-HHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----------NKDIVA-WNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 133 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
...|+.+..-..+...+...|...|+++.|..+++... .|.+.+ .+.+...|...+++++|..+|+++.
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444455566668899999999999999988876 233332 3346778999999999999998876
Q ss_pred C----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Q 046354 202 Q----------R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 202 ~----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 270 (510)
. | -..+++.|..+|.+.|++++|...++...+.
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------------------ 312 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------------------ 312 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------------------
Confidence 4 1 2356888888999999999999998887541
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCCc
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKS---GTKPDE 343 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 343 (510)
+++... +.+ ..++.+...+...+++++|..+++...+. -+.++.
T Consensus 313 -----------------------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 313 -----------------------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred -----------------------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 000000 111 12455566777788888888887766542 123332
Q ss_pred ----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh----C-CCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-----
Q 046354 344 ----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY----G-FKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH----- 408 (510)
Q Consensus 344 ----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 408 (510)
.+++.+...|...|++++|.++++++.... + ..+ ....++.|...|.+.+++.+|.++|.+....
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 478888899999999999999998887653 1 112 2445678888999999999888888765431
Q ss_pred --CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 409 --ERD-HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 409 --~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 343 4489999999999999999999999887
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-07 Score=90.87 Aligned_cols=407 Identities=11% Similarity=0.034 Sum_probs=248.5
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhcccc-CCChhHHHHHHHHHHhcCChhhHHHHHHhhcc----C-ChhhHHHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE----G-NVYSWTSLI 96 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~li 96 (510)
-++..|..|.-++.+.|+++.+.+.|++.... .-....|+.+...+...|.-..|..+++.-.. | +...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 36677777777788888888888888876543 23556777788888888888888888877733 2 233344444
Q ss_pred HHHH-cCCChHHHHHHHHhcccc------CCChhhHHHHHHHHHhc------------------------CCcchhhHHH
Q 046354 97 SGYF-KARQVDEGRRLFDRMPLK------LKNVVSWTTVVLGCAHN------------------------GLIAKLEVIS 145 (510)
Q Consensus 97 ~~~~-~~g~~~~A~~~~~~m~~~------~~~~~~~~~ll~~~~~~------------------------~~~~~a~~~~ 145 (510)
..|. +-+..++++..-.+.... ......+..+.-+|... -.++..|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4444 345566665555555441 11112222222222111 1111115556
Q ss_pred HHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhc
Q 046354 146 WTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARN 218 (510)
Q Consensus 146 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 218 (510)
...+.--|.-.++.+.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.... + |-.....-+..-..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 6666667778888888888887766 55778899999999999999999999887654 2 222222223333346
Q ss_pred CChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCC------c-chhhhhhhhhhcccccccc
Q 046354 219 GPEGAAMKLLNLMFQS--RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE------Q-ETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l~~~~~~~~~~~ 289 (510)
++.++++.....+..- ...|-..+.. .......+.|.. . ....+..+.... . .-.+
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~-------------~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~-a-~~~~ 625 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLD-------------EGKLLRLKAGLHLALSQPTDAISTSRYLSSLV-A-SQLK 625 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhh-------------hhhhhhhhcccccCcccccccchhhHHHHHHH-H-hhhh
Confidence 6777776655554320 0000000000 000000000000 0 000111110000 0 0011
Q ss_pred ccChhhHHHHhcccCCCC------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHH
Q 046354 290 QLDVNSARLAFERLEAKD------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 363 (510)
.-..+.....+.....|+ ...|......+...++.++|...+.+..+. .+-....|......+...|..++|.
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 111111111111112222 124667778888999999999998888774 3444456666667778889999999
Q ss_pred HHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHH--HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 364 KTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMR--VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 364 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+.|..... +.| .+....++..++.+.|+..-|.. ++..+.+.+| ++..|..+...+.+.|+.++|...|..+.
T Consensus 705 ~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 705 EAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99988874 466 57778899999999998887777 9999988877 78899999999999999999999999999
Q ss_pred hcCCCCchh
Q 046354 440 ELQPSSSGA 448 (510)
Q Consensus 440 ~~~p~~~~~ 448 (510)
++++.+|.-
T Consensus 782 qLe~S~PV~ 790 (799)
T KOG4162|consen 782 QLEESNPVL 790 (799)
T ss_pred hhccCCCcc
Confidence 998877643
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=5.4e-08 Score=88.13 Aligned_cols=206 Identities=10% Similarity=-0.051 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|+...+. .|+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~------------- 130 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT------------- 130 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 455555566666666666666655544 23455666666666666666666666665441 121
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+..+|..+..++...|++++|.+.|+
T Consensus 131 ------------------------------------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 131 ------------------------------------------------------YNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred ------------------------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33456667777888899999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH--HHHHhhCCCC--
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA--MRVVSKMPPH-- 408 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~-- 408 (510)
...+. .|+..........+...++.++|...++.... ..+|+...+ .+. ....|+..++ .+.+.+..+.
T Consensus 157 ~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNT 229 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcH
Confidence 98874 45443222222223456789999999977654 333433222 222 2335555443 3223222222
Q ss_pred --CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 046354 409 --ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP-SSSGAYVLSANVHA 457 (510)
Q Consensus 409 --~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 457 (510)
.| ....|..+...+...|++++|...|+++++.+| +.+..-..++....
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22 345788899999999999999999999999987 44444444444433
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=8.5e-08 Score=91.85 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----C----------CCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKS----G----------TKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
.+|+.+-..|....+..-...++...... | -+|+.. ++..+.+.|...|++++|+++.++....
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34555555555444444444444444322 1 133332 4466677788999999999999999864
Q ss_pred hCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCC---
Q 046354 373 YGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ--PSS--- 445 (510)
Q Consensus 373 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~--- 445 (510)
.|+ +..|..-++.+-+.|++++|.+.++.....++ |...-+..+..+.+.|+.++|.+++....+.+ |..
T Consensus 224 ---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 ---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred ---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 554 77888889999999999999999999987777 55566666777889999999999999876444 222
Q ss_pred ----chhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 446 ----SGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 446 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.......+.+|.+.|++..|++.|..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11135577889999999999999988774
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.1e-08 Score=83.54 Aligned_cols=201 Identities=13% Similarity=0.065 Sum_probs=167.6
Q ss_pred hhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh
Q 046354 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352 (510)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 352 (510)
..+...| ...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-
T Consensus 39 lqLal~Y-----L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 39 LQLALGY-----LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHH-----HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 3455566 8999999999999999873 34589999999999999999999999998852 3445677777788
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
+|..|.+++|.+.|+..........-..+|..+.-+..+.|+++.|...|++..+..| .+.+.-.+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8999999999999999998733333567888999999999999999999999998877 456778888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
...++......+.........+.+-.+.|+-+.|-++-..+.+..|-.+.+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999987777666777788888999999999999988887666655443
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=2.2e-06 Score=82.70 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=130.0
Q ss_pred CcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc-----------CCChhHHHHHHHHHHh
Q 046354 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-----------QRNIVAESAMIDGYVK 70 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~p~~~~~~~li~~~~~ 70 (510)
++|...|+.+.|.+-++.+. +...|..+.+.|.+.++++-|.-.+..|... .|+ ..-....-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 35667788888877776653 4567888899998888888888777777543 232 222222233344
Q ss_pred cCChhhHHHHHHhhcc-----------------------CC----hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh
Q 046354 71 AGRVDEARKVFDEIYE-----------------------GN----VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123 (510)
Q Consensus 71 ~~~~~~A~~~~~~~~~-----------------------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 123 (510)
.|..++|..++.+-.+ .| ..||......+-..+|.+.|++.|++... |--.
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--hafe 890 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV--HAFE 890 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--hHHH
Confidence 4555555555544322 11 13455555555556666666666665433 1111
Q ss_pred hHHH------HHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046354 124 SWTT------VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197 (510)
Q Consensus 124 ~~~~------ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 197 (510)
.+.. -+.-|.+... +...|.-....+...|+.+.|+.+|... .-|.++++..|-.|+.++|-++-
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~----d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHHhChHHHHHHHHhcc----chHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHHH
Confidence 1111 1122222211 4455666666666777777777777643 34666677777777777777766
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 198 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
++- .|......+...|-..|++.+|..+|.+.+
T Consensus 962 ~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred Hhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 554 366667788899999999999999998874
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.3e-08 Score=92.18 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=135.4
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVL 350 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 350 (510)
+..+...| ...|+.+.|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+.
T Consensus 67 ~~~~g~~~-----~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg 139 (296)
T PRK11189 67 HYERGVLY-----DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHH-----HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44444555 788999999999988876 35678999999999999999999999999974 455 45777888
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~ 429 (510)
.++...|++++|.+.++...+. .|+..............+++++|...+++.... .|+...+ . ......|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~--~~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N--IVEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--HHHHHccCCC
Confidence 8888999999999999999864 454332222233345678899999999665422 3332222 2 2223345543
Q ss_pred HHHHHHHHHH-------hcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 430 MADYIGERLI-------ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 430 ~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+ ..++.+. ++.|+.+..|..++.++...|++++|+..|++...
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 2334333 55666778899999999999999999999998873
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=94.30 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=166.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 213 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
.-+.+.|++.+|.-.|+..++.. +.+...|..|.... ...++
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd---------------------------------P~haeAW~~LG~~q-----aENE~ 334 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD---------------------------------PQHAEAWQKLGITQ-----AENEN 334 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC---------------------------------hHHHHHHHHhhhHh-----hhccc
Confidence 34567888888888888775532 23334444444444 66667
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----C---CchhHHHHHHhcCcCCcHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-----P---DEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~~~~~~~li~~~~~~g~~~~ 361 (510)
-..|+..+.+..+ .|....-.|.-+|...|.-..|+..|+.-+....+ + +...-.. ..+........
T Consensus 335 E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~ 412 (579)
T KOG1125|consen 335 EQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAH 412 (579)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHH
Confidence 7777777777665 35567777778888999888999988877654211 0 0000000 22333444556
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
..++|-++....+..+|+.+...|.-.|--.|.+++|...|+.+....| |...||.|...++...+.++|+..|.++++
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 6677766666546668999999999999999999999999999998888 667999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.|.-......|+-.|...|.+++|.+.|=...
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999876665
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=2.4e-06 Score=81.48 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=76.2
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 354 (510)
|..+...| +..|+++.|+++|-+.. .++-.|..|.+.|+++.|.++-.+. .|.......|..-..-+-
T Consensus 768 y~~iadhy-----an~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 768 YGEIADHY-----ANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLD 835 (1636)
T ss_pred chHHHHHh-----ccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHH
Confidence 34445556 77888888888876543 3555677788888888887775443 343444455555555556
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhhCCHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~ 432 (510)
..|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-. |+ ..|-..+..-+...|+...|+
T Consensus 836 ehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred hhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHH
Confidence 6666666666553331 122 23456666666666666665543 21 123333344444444444444
Q ss_pred HHHH
Q 046354 433 YIGE 436 (510)
Q Consensus 433 ~~~~ 436 (510)
.-|-
T Consensus 903 ~~fl 906 (1636)
T KOG3616|consen 903 EHFL 906 (1636)
T ss_pred HHHH
Confidence 4433
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.3e-06 Score=77.88 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=131.9
Q ss_pred HHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCCh
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 174 (510)
=++.+...|++++|.....++....||..+ ++..-+-+..+.+.++.|+.+.+.-.. .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------------------a~~cKvValIq~~ky~~ALk~ikk~~~--~ 75 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDED--------------------AIRCKVVALIQLDKYEDALKLIKKNGA--L 75 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHh--------------------hHhhhHhhhhhhhHHHHHHHHHHhcch--h
Confidence 356677889999999999999887555322 222233445666777888766654321 1
Q ss_pred hHHHH----HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHH
Q 046354 175 VAWNA----MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTS 249 (510)
Q Consensus 175 ~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~ 249 (510)
.+++. -.-+..+.|..|+|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--..- -..++.+
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 12222 234556889999999999966666666677777888999999999999999977765432222 2222222
Q ss_pred hhhhhhhhHHHHHHHHhCCCc--chhhhhhhhhhccccccccccChhhHHHHhcccC--------CCCh-----h-----
Q 046354 250 CEGMLENMLAHALAIRLGFEQ--ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE--------AKDV-----V----- 309 (510)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~-----~----- 309 (510)
..... .. ........+ +-.........+ ...|++.+|+++++... ..+. .
T Consensus 156 ~a~l~-~~----~~q~v~~v~e~syel~yN~Ac~~-----i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 156 AAALQ-VQ----LLQSVPEVPEDSYELLYNTACIL-----IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHhhh-HH----HHHhccCCCcchHHHHHHHHHHH-----HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 21111 10 111111111 222333334445 78899999999998772 1111 0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
.---|.-.+...|+.++|..++...++.. ++|.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 11224455677899999999999888874 4443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=4.3e-06 Score=72.64 Aligned_cols=322 Identities=12% Similarity=0.062 Sum_probs=200.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh-hHHHHHHHHH
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY-SWTSLISGYF 100 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~ 100 (510)
+.-...+...+...|++..|+.-|....+.+|+. .++-.-...|...|+-..|+.-++.+++ ||.. +...-...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 3444556778888999999999999999876654 3455566788889999999988888855 5543 2223345678
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHH
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAW 177 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 177 (510)
+.|.+++|..=|+.+.+..|+..+-. .+..+.-..+ .-......+..+...|+...|++....+. +-|...|
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 99999999999999988755432211 1111111010 12233344556667888888888888877 5577778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
..-..+|...|++..|+.=++...+ .++.++..+-..+...|+.+.++...++-++ +.||...+-..-..+.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk--- 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLK--- 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH---
Confidence 8888999999999998776655543 6777777788888899999999888888766 4555443222211110
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
+..+.++. +......+++.++++..+..
T Consensus 268 ----------------------------------------Kv~K~les------------~e~~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 268 ----------------------------------------KVVKSLES------------AEQAIEEKHWTECLEAGEKV 295 (504)
T ss_pred ----------------------------------------HHHHHHHH------------HHHHHhhhhHHHHHHHHHHH
Confidence 00000000 11223445566666666655
Q ss_pred HHcCCCCCchh---HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 335 LKSGTKPDEIT---FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 335 ~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
.+......... +..+-+++...+++.+|++.-.+... +.|+ +.++.--.++|.-...++.|+.-|+...+..+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 55321111222 22333444556666666666666653 3443 55665556666666666667666666665544
Q ss_pred c
Q 046354 411 D 411 (510)
Q Consensus 411 ~ 411 (510)
+
T Consensus 373 s 373 (504)
T KOG0624|consen 373 S 373 (504)
T ss_pred c
Confidence 3
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.1e-07 Score=87.12 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=129.1
Q ss_pred ccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-------hHHHHHHhcCcCCc
Q 046354 288 GFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-------TFVGVLSDCSHAGL 358 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~ 358 (510)
-+..+++.|.+.+..... .++.-++....+|...|.+..+...-....+.|-. ... .+..+..++.+.++
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 555566666666666554 33344555666677777666665555554444311 111 12223335566677
Q ss_pred HHHHHHHHHHHHHhhCCCCCcch-------------------------hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEH-------------------------YSCLADILRRAGQVKEAMRVVSKMPPHER-DH 412 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 412 (510)
++.+..+|.+.... ...|+... ...-...+.+.|++..|+..|.+++...| |.
T Consensus 314 ~~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred HHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 77888877776665 33333111 01113446678999999999999987888 67
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|.....+|.+.|.+..|..-.+..++++|+.+..|..-+.++....+|++|.+.|++..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998655
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=2.2e-06 Score=81.63 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=50.5
Q ss_pred HHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHH
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 110 (510)
.+.+-.....+.+|+.+++.+..+....--|..+..-|...|+++.|.++|.+.- .++-.|.+|.+.|+++.|.+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3445556666677777776666654444455566666666777777776665542 24455666677777777766
Q ss_pred HHHhccc
Q 046354 111 LFDRMPL 117 (510)
Q Consensus 111 ~~~~m~~ 117 (510)
+-++...
T Consensus 813 la~e~~~ 819 (1636)
T KOG3616|consen 813 LAEECHG 819 (1636)
T ss_pred HHHHhcC
Confidence 6665554
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=2.2e-08 Score=89.23 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=161.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++-+.-.|++..++.-.+ ... .+......+.+++...|+++.++ .++.... .|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~------ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL------ 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH------
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH------
Confidence 344566788888886555 222 23344556677888888877544 3333322 44433332222211
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-C----ChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-K----DVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
...++-+.+..-++.... + +....-.....+...|++++|++++
T Consensus 77 -------------------------------~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l 125 (290)
T PF04733_consen 77 -------------------------------SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLL 125 (290)
T ss_dssp -------------------------------CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_pred -------------------------------hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222334444444443332 1 2222223334566789999999988
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCC
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPP 407 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 407 (510)
+.- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...++.++.. .+.+.+|..+|+++.+
T Consensus 126 ~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 126 HKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp TTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred Hcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 642 3456667788899999999999999999974 3333 444455555543 3469999999999876
Q ss_pred C-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhcccc
Q 046354 408 H-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW-DEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 408 ~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~p 480 (510)
. .+++.+.+.+..++...|++++|..+++++++.+|+++.+...++.+....|+. +.+.+++++++...+..|
T Consensus 196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6 568889999999999999999999999999999999999999999999999988 667888888775444333
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=7e-08 Score=81.20 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=118.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4568888998887554432221 11 1223467778888888887763 45688899999999999999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGAC-RLHGD--VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+++|...+++..+..| +...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988877 666777777764 66677 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 046354 471 KMERRVKK 478 (510)
Q Consensus 471 ~~~~~~~~ 478 (510)
++.+..++
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99854444
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1e-07 Score=83.75 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=115.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc--
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-- 380 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 380 (510)
....+-.+...+...|++++|...|+++... .|+. ..+..+..++...|++++|...++.+.+.+ +.++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 3445666667777788888888888877664 2332 345556667777788888888888887642 21222
Q ss_pred -hhHhHHhHHhhc--------CChHHHHHHHhhCCCCCCcHH-HH-----------------HHHHHHHHhhCCHHHHHH
Q 046354 381 -HYSCLADILRRA--------GQVKEAMRVVSKMPPHERDHV-VL-----------------GALLGACRLHGDVRMADY 433 (510)
Q Consensus 381 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 433 (510)
.+..+..++... |++++|.+.++++....|+.. .+ ..+...+.+.|++.+|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344444444443 667778888877765555432 21 134556778899999999
Q ss_pred HHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 434 IGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 434 ~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++++++..|+++ ..+..++.++...|++++|..+++.+..
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998877654 5689999999999999999999998874
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2e-05 Score=76.32 Aligned_cols=365 Identities=12% Similarity=0.084 Sum_probs=213.0
Q ss_pred CChhhHHHHHH--HHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc------------CC
Q 046354 23 PDPVSCASMIT--VFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE------------GN 88 (510)
Q Consensus 23 ~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------~~ 88 (510)
-|..+-..++. .|..-|+.+.|.+-.+.+.. ..+|..+.+.|.+.++.|-|.-.+-.|.. .+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 45566666664 35677888888877766654 57888999999999999888888877722 12
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-----------hHHHHHHHHHHHHhcC
Q 046354 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-----------EVISWTTMCTGLERNA 157 (510)
Q Consensus 89 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a-----------~~~~~~~l~~~~~~~~ 157 (510)
..+-.-+.-.....|.+++|..+|.+-++ |..|=..|-..|.+++| -..+|...+.-+...+
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 23333344445677899999999988766 33333344455555555 2334444555555555
Q ss_pred chHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 158 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
+.+.|++.|++...+-..++..|. .++.......+.+. |...|.-....+-..|+.+.|+.+|....+.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~--- 941 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKDY--- 941 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhhh---
Confidence 556666655554333222222221 12222333333333 3344444556666788888888888877542
Q ss_pred CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH
Q 046354 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317 (510)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 317 (510)
..++... |-.|+.++|-++-++- .|..+...+...
T Consensus 942 --------------------------------------fs~VrI~-----C~qGk~~kAa~iA~es--gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 942 --------------------------------------FSMVRIK-----CIQGKTDKAARIAEES--GDKAACYHLARM 976 (1416)
T ss_pred --------------------------------------hhheeeE-----eeccCchHHHHHHHhc--ccHHHHHHHHHH
Confidence 2222223 7778888887776543 344455567777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc---------------CcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC---------------SHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
|-..|++.+|..+|.+... |...|+.| +...+.-.|.++|++. |.. .
T Consensus 977 YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~ 1038 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----A 1038 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----h
Confidence 8888888888888776542 22222222 2222333444555544 211 1
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCC----------CC--CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---------
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMP----------PH--ERDHVVLGALLGACRLHGDVRMADYIGERLIEL--------- 441 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------- 441 (510)
...+..|.+.|.+.+|+++--+-. +. ..|+...+.-...+..+.++++|..++-...+.
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN 1118 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223456777777777776532211 11 335556666666666667777777665544311
Q ss_pred -------------CCCC---------chhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 442 -------------QPSS---------SGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 442 -------------~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
.|.. ......++..+.++|.+..|.+-|-+.
T Consensus 1119 ~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1119 RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1111 123778899999999999888877654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=7e-06 Score=69.95 Aligned_cols=403 Identities=11% Similarity=0.050 Sum_probs=233.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHH-HHHHHHcCC
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTS-LISGYFKAR 103 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 103 (510)
+++.+..+.+..++++|++++..-.+..| +....+.|..+|....++..|-..++.+.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 56677778889999999999998888777 666777788888899999999999998844 44433332 345667788
Q ss_pred ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHH
Q 046354 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~ 182 (510)
.+..|+++...|.+. |+...-..-+.+ ...-..+++..+..++++.. +.+..+.+....
T Consensus 93 i~ADALrV~~~~~D~-~~L~~~~lqLqa-------------------AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gC 152 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-PALHSRVLQLQA-------------------AIKYSEGDLPGSRSLVEQLPSENEADGQINLGC 152 (459)
T ss_pred ccHHHHHHHHHhcCC-HHHHHHHHHHHH-------------------HHhcccccCcchHHHHHhccCCCccchhccchh
Confidence 999999999888763 222211111111 12234567777888888877 566777777777
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHh--hhhhh
Q 046354 183 AYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSC--EGMLE 255 (510)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~--~~~~~ 255 (510)
...+.|+.+.|.+-|+...+ .....||..+. +.+.|+++.|++...++.+.|++-.+.. ..+..... ..+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg- 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG- 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc-
Confidence 88899999999999998887 34566776554 5578899999999999999886422110 00000000 0000
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccc--cccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhcCChhhHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWD--WGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+-..-...++.++.++. ..+.|+.+.|.+.+-.|+. .|++|...+.-.-+ .+++.+..
T Consensus 231 -------------Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~ 296 (459)
T KOG4340|consen 231 -------------NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGF 296 (459)
T ss_pred -------------chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccH
Confidence 000001112222222111 1577888888888888876 35555544432222 34455555
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC-CCcchhHhHHhHHhh-cCChHHHHHHHhhCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK-PRAEHYSCLADILRR-AGQVKEAMRVVSKMP 406 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 406 (510)
+-+.-+.... +....||..++-.||+..-++.|..++.+-... ... .++..|+ |++++.- .-..++|.+-++.+.
T Consensus 297 ~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555542 233468888888888888888877776543221 111 1233333 3333332 334555555444332
Q ss_pred CCCCcHHHHHHHHHHH-Hhh-CC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 407 PHERDHVVLGALLGAC-RLH-GD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 407 ~~~p~~~~~~~l~~~~-~~~-~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.. ....-...+..- .+. ++ ...|++-|+..+++- -......++.|.+..++..+.++|..-.
T Consensus 374 ~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 374 GML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 110 000001111111 111 11 122333333333221 0123445566788888988988887543
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=2.7e-06 Score=73.79 Aligned_cols=305 Identities=12% Similarity=0.025 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHH---HHHHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM---ITAYVDAGNMAQASELFNLMPQ--RNVWT-WNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~ 215 (510)
+..-...+...+...|++..|+.-|...++.|+..|.++ ...|...|+..-|+.=+....+ ||-.. --.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 445555667778888999999999999887777666655 4578888888888877777765 55432 22234567
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhh
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 295 (510)
.+.|.+++|..=|+..+++.. +..+-.-.-..+.-..+. ......+..+ ...|+...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~--s~~~~~eaqskl~~~~e~----------------~~l~~ql~s~-----~~~GD~~~ 173 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEP--SNGLVLEAQSKLALIQEH----------------WVLVQQLKSA-----SGSGDCQN 173 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCC--CcchhHHHHHHHHhHHHH----------------HHHHHHHHHH-----hcCCchhh
Confidence 899999999999999987543 211111111000000000 0000111111 44555555
Q ss_pred HHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 296 ARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 296 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|+.....+.+ -+...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+-..|+.+.++...++..
T Consensus 174 ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-- 250 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL-- 250 (504)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH--
Confidence 5555555544 233444444555666666666655554444432 2222333333344445555555555555554
Q ss_pred hCCCCCcchh----Hh-------H--HhHHhhcCChHHHHHHHhhCCCCCCcHH-----HHHHHHHHHHhhCCHHHHHHH
Q 046354 373 YGFKPRAEHY----SC-------L--ADILRRAGQVKEAMRVVSKMPPHERDHV-----VLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 373 ~~~~~~~~~~----~~-------l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~ 434 (510)
.+.|+-..+ .. | +....+.++|.++.+..+...+..|... .+..+-.++...|++.+|++.
T Consensus 251 -KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 251 -KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred -ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 234442211 10 0 1112334555555555555444444311 222333344455666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++++.+|++..++..-+.+|.-...+++|+.-|+...
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666555443
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=3e-08 Score=78.88 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=49.2
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
.+...+...|++++|...|+......| +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 344455555555555555555554444 4445555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHH
Q 046354 463 DEFAQVRKKME 473 (510)
Q Consensus 463 ~~A~~~~~~~~ 473 (510)
++|+..|+...
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.7e-05 Score=84.68 Aligned_cols=150 Identities=14% Similarity=-0.004 Sum_probs=81.4
Q ss_pred HHhcCChhhHHHHHHhhcc----CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC--C---hhhHHHHHHHHHhcCCc
Q 046354 68 YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--N---VVSWTTVVLGCAHNGLI 138 (510)
Q Consensus 68 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---~~~~~~ll~~~~~~~~~ 138 (510)
....|+++.+...++.+.. .+..........+...|++++|...+.......+ + .....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~------------ 451 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ------------ 451 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH------------
Confidence 3455677777676666521 2222333444455567777777777766543200 0 00000
Q ss_pred chhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C
Q 046354 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDI----VAWNAMITAYVDAGNMAQASELFNLMPQ-------R 203 (510)
Q Consensus 139 ~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 203 (510)
......+...+...|+++.|...++... ..+. ...+.+...+...|++++|...+.+... +
T Consensus 452 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 452 ----AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch
Confidence 0111122344556777777777776643 1111 2334455566777888887777766543 1
Q ss_pred C--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 204 N--VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 204 ~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
. ..++..+...+...|++++|...+++...
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 23344556667778888888877776644
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=8.1e-07 Score=75.46 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhcCCh
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNA-MIDRYARNGPE 221 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~ 221 (510)
..+..+.+..+++.|++++..-. +.+....+.+..+|....++..|-..++++-. |...-|.. -..++.+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 34445566777888888877655 33556778888999999999999999998876 54444432 24567788889
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH--HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHH
Q 046354 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA--HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299 (510)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 299 (510)
..|+++...|.+. |+...-..-+.+.....+.... ..+......+.+..+.+...... .+.|+++.|.+-
T Consensus 95 ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll-----ykegqyEaAvqk 166 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL-----YKEGQYEAAVQK 166 (459)
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee-----eccccHHHHHHH
Confidence 9999998888543 2222222222222111111100 00111111122333333333333 555666666666
Q ss_pred hcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 300 FERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 300 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
|+...+ .....||..+. +.+.|+++.|++...+.+++|++
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 655544 22334444332 33445566666666666666554
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00011 Score=73.11 Aligned_cols=238 Identities=11% Similarity=0.115 Sum_probs=157.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhh
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (510)
.|+..-+.-+.++...+-+.+-.++++++.-.+ +.-+...-+.++-...+. +..++..++.+..--..+.+.+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~ia-- 1058 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIA-- 1058 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHH--
Confidence 466667777888888888888889988876432 122222223333222111 122222333222211111111111
Q ss_pred hccccccccccChhhHHHHhcccCC-------------------------CChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 046354 281 HYVFWDWGFQLDVNSARLAFERLEA-------------------------KDVVSWTAMILAYSNHGHGFQVFRLFARML 335 (510)
Q Consensus 281 ~~~~~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 335 (510)
...+-+++|..+|++... ..+..|+.+..+-.+.|...+|.+-|-+
T Consensus 1059 -------i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik-- 1129 (1666)
T KOG0985|consen 1059 -------IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK-- 1129 (1666)
T ss_pred -------hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh--
Confidence 223334555555543321 1345799999999999999999887743
Q ss_pred HcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH
Q 046354 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415 (510)
Q Consensus 336 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (510)
..|+..|..++..+.+.|.+++-.+++....+. .-.|... +.|+-+|++.+++.+.++++ ..|+..-.
T Consensus 1130 ----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi-----~gpN~A~i 1197 (1666)
T KOG0985|consen 1130 ----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI-----AGPNVANI 1197 (1666)
T ss_pred ----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh-----cCCCchhH
Confidence 346778999999999999999999999988876 5555544 57899999999999888766 36788878
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
..+..-|...|.++.|.-+|... +-|..|+..+...|++..|...-++.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888899999999888888753 56777888888888777776544433
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=7.7e-08 Score=76.55 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=102.5
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
.++++..+ ..|+. +..+...+...|++++|...|+.+... -+.+...+..+..++.+.|++++|...|++....
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555554 34553 445667778899999999999998863 3447888899999999999999999999999877
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.| +...+..+..++...|++++|...|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77 677889999999999999999999999999999999998887777544
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=4.7e-05 Score=70.49 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLIS 97 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 97 (510)
-|..+|+.||+-+ +....+++...++++....| ....|..-|..-.+.++++...++|.+.+. -+...|...+.
T Consensus 18 ~di~sw~~lire~-qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREA-QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHH-ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 4667777777755 33377777778877777666 455666677777777777777777777643 34555555554
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=6.5e-06 Score=81.29 Aligned_cols=447 Identities=13% Similarity=0.059 Sum_probs=222.8
Q ss_pred hHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 10 VKEATKLFDEMSQPD---PVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 10 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
...|...|-+..+.| ...|..|...|...-+...|...|+...+.+| +......+...|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 444555554444322 34677777777777777888888888887755 55667777788888888888887744433
Q ss_pred cCCh-----hhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchh-------------hHHHH
Q 046354 86 EGNV-----YSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKL-------------EVISW 146 (510)
Q Consensus 86 ~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~ 146 (510)
+.+. ..|...--.|...+++..|..-|+...+. +.|...|..+..+|.+.|.+..+ +...-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 2211 22333334455666777777777766664 33444444444444444444333 11111
Q ss_pred HHHHHHHHhcCchHHHHHHHhhCC----------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCh
Q 046354 147 TTMCTGLERNAMTKLAREYFVQMP----------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----------RNV 205 (510)
Q Consensus 147 ~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~ 205 (510)
.......+..|.++++...+.... ..-..++-.+...+.-.|-..+|...++...+ .+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 111112223344444444333332 00011111111122222222222222222111 011
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh--hHHHHHH-----HHhCCCcchhhhhhh
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN--MLAHALA-----IRLGFEQETSLTYKC 278 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~l 278 (510)
..|-.+- .|..+|-... .. .|+.+....+.......... ..+.... ...........|..+
T Consensus 714 ~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 714 LQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 1111111 1112222211 00 22322222222211111000 0000000 011111123333333
Q ss_pred hhhccc-cc-ccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh
Q 046354 279 TCHYVF-WD-WGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352 (510)
Q Consensus 279 ~~~~~~-~~-~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 352 (510)
+..|+- .. +...+ +...|...+.+..+ .+...||.|.-. ...|++.-|...|-.-... .+....+|..+.-.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecccee
Confidence 332210 00 01222 22356777766654 566677776555 5567777777777666554 24555688888888
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCC------CCCcHHHHHHHHHHHHhh
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPP------HERDHVVLGALLGACRLH 425 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~l~~~~~~~ 425 (510)
+....+++.|...|..... +.| +...|-.........|+.-++..+|..-.+ .-|+..-|.+...-....
T Consensus 860 ~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 8889999999999988864 455 444444444444567777777777764211 133444443333334444
Q ss_pred CCHHH----------HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRM----------ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~----------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|+.++ |--.+++.....|+...+|...+...-+.+.+.+|.+...+..
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 54444 3334445557788888889999999999998888888877654
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=8.4e-06 Score=76.75 Aligned_cols=186 Identities=15% Similarity=-0.039 Sum_probs=120.7
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCc--hhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDE--ITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~ 361 (510)
...|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 778899999999988876 3456778888899999999999999998877421 1222 234567778889999999
Q ss_pred HHHHHHHHHHhhCCCCCcchh-H--hHHhHHhhcCChHHHHHH---HhhCCCCCCc---HHHHHHHHHHHHhhCCHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHY-S--CLADILRRAGQVKEAMRV---VSKMPPHERD---HVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~ 432 (510)
|..++++........+..... + .++..+...|..+.+.++ ........|. .........++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 999999986431111111111 1 223333444543333332 1111101111 122224556677889999999
Q ss_pred HHHHHHHhcCCC---------CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPS---------SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+++.+....-. ........+.++...|++++|.+.+....
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998742211 23335666777899999999999998776
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=2.6e-07 Score=87.90 Aligned_cols=210 Identities=8% Similarity=-0.064 Sum_probs=161.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
..+...+...|-...|+.+++++- .|...+.+| .
T Consensus 402 ~~laell~slGitksAl~I~Erle-----------------------------------------mw~~vi~CY-----~ 435 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----------------------------------------MWDPVILCY-----L 435 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----------------------------------------HHHHHHHHH-----H
Confidence 445666777777777777777652 344555666 7
Q ss_pred cccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
..|+..+|..+..+..+ |+...|..+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.|
T Consensus 436 ~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHH
Confidence 77888888877766554 56677777777766666677777777654321 1112222234478899998888
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.-.+- .+....+|-.+..+..+.++++.|.+.|.......|+ ...||++-.+|.+.|+-.+|...++++++.+-.+
T Consensus 509 e~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 509 ERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 887753 2346778888888889999999999999999878884 5599999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+....-+..+.|.|++|.+.+.++.
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 8889999889999999999999999997
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=1.9e-05 Score=74.29 Aligned_cols=263 Identities=13% Similarity=0.038 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC--h-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh-hHHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ---RN--V-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET-TCTSI 246 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~--~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l 246 (510)
...|..+...+...|+.+.+.+.+....+ ++ . .........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 34556666667777777776555554432 12 1 22223344567789999999999988764 33332 1111
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCC
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGH 323 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 323 (510)
... ..... ...+....+.+.+..... + .......+...+...|+
T Consensus 83 ~~~----------------------------~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 83 HLG----------------------------AFGLG-----DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred hHH----------------------------HHHhc-----ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 000 00000 224455556665554332 2 22344556678889999
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc--chhHhHHhHHhhcCChHHHHHH
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA--EHYSCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 401 (510)
+++|...+++..+.. +.+...+..+...+...|++++|..++++........|+. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999863 4455677888888999999999999999988641112232 2345688899999999999999
Q ss_pred HhhCCCCCCcHHHH----H--HHHHHHHhhCCHHHHHHH---HHHHHhcCCCCchh--HHHHHHHHHHcCCChHHHHHHH
Q 046354 402 VSKMPPHERDHVVL----G--ALLGACRLHGDVRMADYI---GERLIELQPSSSGA--YVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 402 ~~~~~~~~p~~~~~----~--~l~~~~~~~~~~~~A~~~---~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+++.....|....+ + .++.-+...|....+.+. ........|..... -...+.++...|+.++|.+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99976443311111 1 223333344543333333 22211111222222 3356677888999999999999
Q ss_pred HHH
Q 046354 471 KME 473 (510)
Q Consensus 471 ~~~ 473 (510)
.+.
T Consensus 289 ~l~ 291 (355)
T cd05804 289 ALK 291 (355)
T ss_pred HHH
Confidence 987
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=2.2e-05 Score=77.73 Aligned_cols=439 Identities=12% Similarity=0.012 Sum_probs=217.0
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChh-HHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV-AESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~ 79 (510)
|.+.++...|+.-|+... +.|...|..+..+|.+.|++..|+++|.++...+|+.. .--...-.-+..|.+.+|..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 567788888888888887 34677888999999999999999999999988777543 22223344567789999998
Q ss_pred HHHhhccC----------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc---------CCChhhHHHHHHHH--------
Q 046354 80 VFDEIYEG----------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK---------LKNVVSWTTVVLGC-------- 132 (510)
Q Consensus 80 ~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~ll~~~-------- 132 (510)
.+...... -..++..+...+.-.|-..+|...+++-++. ..+...|..+-.+|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 88877331 1123333333333333333333333332221 11222222222221
Q ss_pred ---------------HhcCCcchh------------------hHHHHHHHHHHHHh--------cCchHHHHHHHhhCC-
Q 046354 133 ---------------AHNGLIAKL------------------EVISWTTMCTGLER--------NAMTKLAREYFVQMP- 170 (510)
Q Consensus 133 ---------------~~~~~~~~a------------------~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~- 170 (510)
...+..... +...|..+...|.+ ..+...|...+...+
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 111111000 22233333322222 111224444444443
Q ss_pred --CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 171 --NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 171 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
..+...|+.|.-. ...|++.-|...|-+... .+..+|..+.-.+..+.+++.|...|...+. +.|+...--.
T Consensus 812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~Wl 888 (1238)
T KOG1127|consen 812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWL 888 (1238)
T ss_pred HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHH
Confidence 3444555555443 444555555555543322 3456677777777888899999999988865 4554433221
Q ss_pred HH----HHhhhhhhhhHHHHHHH----HhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC------------
Q 046354 246 IL----TSCEGMLENMLAHALAI----RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA------------ 305 (510)
Q Consensus 246 ll----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~------------ 305 (510)
-. .+.++..+......+.. ..|--+...-+....... ...|+.++-...-+++..
T Consensus 889 G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h-----~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 889 GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH-----LQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH-----HhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 11 12333444444443321 222223333332222222 445555555444444432
Q ss_pred C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHH----HHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 306 K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGV----LSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 306 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
| ...+|.+.....-+.+.++.|.++..+.+.- ..+-+..+|+.+ .+.++..|.++.|..-+..... ..+.
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~----evdE 1039 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM----EVDE 1039 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch----hHHH
Confidence 2 3346666666666677777777766665421 123344455432 2333445555544332221110 0011
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC---CCcH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDH-VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+...-+.. .-.|+++++.+.|++.... ..+. .....++......+.-+.|...+-+.+.+.|........+.-+
T Consensus 1040 di~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~ 1118 (1238)
T KOG1127|consen 1040 DIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAV 1118 (1238)
T ss_pred HHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 111111111 1246677777777766533 1121 2333334444455566666666666666665554444444333
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=9.6e-07 Score=74.03 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
.+-..+...|+-+....+....... .+-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3444555566666666655554332 122333344466666677777777777777765 4566777777777777777
Q ss_pred CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 393 GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
|+++.|..-|.+..+..| ++...+.+...+.-.|+.+.|+.++.......+.++..-..++.+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777666655 555667777777777777777777777766666666667777777777777777766554
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.5e-05 Score=65.73 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=70.2
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc----CcCCcHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC----SHAGLVEKGR 363 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~g~~~~a~ 363 (510)
+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- .+..|.+.|..++ ...+.+..|.
T Consensus 119 ~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 55566666666555522 2222222223344445555566666666542 2334444443333 2233455555
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhc
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIEL 441 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 441 (510)
-+|+++.+ ..+|++.+.+..+.++...|++++|..+++......+ ++.+...++..-...| +.+--.+.....+..
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555554 3455555555555555555555555555555554433 3334444443333333 223334444444444
Q ss_pred CCCC
Q 046354 442 QPSS 445 (510)
Q Consensus 442 ~p~~ 445 (510)
.|.+
T Consensus 272 ~p~h 275 (299)
T KOG3081|consen 272 HPEH 275 (299)
T ss_pred CCcc
Confidence 4444
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.61 E-value=2.9e-07 Score=71.80 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=86.7
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
....-.+...+...|++++|.++|+-.....| +..-|-.|..++...|++++|+..|..+..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34445567777889999999999999886777 67788899999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhh
Q 046354 458 ARGEWDEFAQVRKKMERRV 476 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~ 476 (510)
..|+.+.|++.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887433
No 113
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=4.1e-06 Score=75.84 Aligned_cols=226 Identities=9% Similarity=-0.006 Sum_probs=155.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (510)
++..+-..+...++.++|+.++.++++ +.|+..|.-. .....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~-------------------------------~R~~iL---- 81 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWH-------------------------------FRRLCL---- 81 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHH-------------------------------HHHHHH----
Confidence 344445556678889999999999876 4454433211 111111
Q ss_pred ccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCCh--hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 287 WGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHG--FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 287 ~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
...| +++++...++++.+ .+..+|+.-...+.+.|+. ++++.+++.+.+.. +-|...|.....++...|+++
T Consensus 82 -~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 82 -EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred -HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 3334 56788888877765 3445676655555556653 67888888888753 456678888888888889999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc---CCh----HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh----CCH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRA---GQV----KEAMRVVSKMPPHER-DHVVLGALLGACRLH----GDV 428 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~----~~~ 428 (510)
++++.++++.+. . +-+...|+....++.+. |.. +++.+...++....| |...|+.+...+... +..
T Consensus 160 eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 999999999875 2 33566666655555443 333 466777767776677 667888888888773 445
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC------------------CChHHHHHHHHHH
Q 046354 429 RMADYIGERLIELQPSSSGAYVLSANVHAARG------------------EWDEFAQVRKKME 473 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 473 (510)
.+|...+.+....+|+++.+...|+.+|+... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67999999988889999989999999998743 2366888888774
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=2.2e-06 Score=71.97 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=112.8
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
..|+......+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335666777778888888888777654 3344566777789999999999999999999987754 8889999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+|.+.|+++.|...|.+++++.|+++.+...++..|.-.|+.+.|..++....
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.9e-06 Score=82.27 Aligned_cols=198 Identities=16% Similarity=0.012 Sum_probs=164.2
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
+.+|-......+...+ .+.|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+..+ -+||+.-|
T Consensus 393 ~lpp~Wq~q~~laell-----~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELL-----LSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHH-----HHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 4566666677777777 8899999999999865 4688889999999999999999988887 48999999
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..+.+......-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+..| ...+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 99999988888889999988776543 112223333457999999999998887777 777999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeEE
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQI 485 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 485 (510)
+++..|.+.|.....++|++...|..+..+|.+.|+..+|...+++..+.. -.|...|.
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWE 591 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWE 591 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeee
Confidence 999999999999999999999999999999999999999999999888544 33333353
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.4e-05 Score=73.06 Aligned_cols=113 Identities=22% Similarity=0.153 Sum_probs=70.0
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
..|.++.|+..++.+.+. .+-|+.......+.+.+.|+.++|.+.++++....|+ ...+-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 456666666666666652 3344555555666666666666666666666666664 4455556666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
+++.....+|+++..|..|+.+|...|+..+|....
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 666666666666666666666666665555444443
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=6.8e-07 Score=70.83 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=60.4
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.....++..+...|++++|.+.++......| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3344555566666666666666666654444 455666666666666677777777776666666666666666667777
Q ss_pred cCCChHHHHHHHHHH
Q 046354 459 RGEWDEFAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~A~~~~~~~~ 473 (510)
.|++++|.+.++...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777776666555
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=2.3e-06 Score=87.22 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=146.6
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCCC--------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--------DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
|.+...|...+... ...++++.|++++++.... -...|.+++..-..-|.-+...++|++..+. -
T Consensus 1455 PNSSi~WI~YMaf~-----LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c 1527 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFH-----LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C 1527 (1710)
T ss_pred CCcchHHHHHHHHH-----hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c
Confidence 45555666666666 7788888888888877651 2346777777777777777888888888763 1
Q ss_pred CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHH
Q 046354 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGA 417 (510)
Q Consensus 341 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ 417 (510)
-.-..|..|...|.+.+..++|.++++.|.++++ ....+|..+++.+.+.++-++|..++.++.+.-|. ......
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2234677778888888888888888888888654 66777888888888888888888888877765553 224444
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..-.+.||.+++..+|+..+.-.|.....|..++..-.+.|+.+.++.+|+++.
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 55556677888888888888888888888888888888888888888888888877
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=2.5e-06 Score=85.16 Aligned_cols=132 Identities=16% Similarity=0.050 Sum_probs=76.0
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLG 416 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 416 (510)
.+.+...+..|.......|..++|..+++.+.+ +.|+ ......++.++.+.+++++|...+++.....|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 344455555555556666666666666666653 2342 334445555666666666666666666555553 33444
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++...|++++|..+|++++..+|+++.++..++.++.+.|+.++|...|+...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555556666666666666666556666666666666666666666666666553
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00033 Score=69.88 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=163.4
Q ss_pred CchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 157 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
+..+.|.+.-++..+| .+|+.+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+++...++..-
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 4555565555554333 46777777777777777777766444 3555677777777777777777777776666655
Q ss_pred CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHH
Q 046354 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316 (510)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 316 (510)
.|...+ .++-++.+..+...+...+ ..|+..-.....+-+ ...|.++.|.-+|. ++.-|..|..
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrc-----f~~~~y~aAkl~y~-----~vSN~a~La~ 1228 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRC-----FEEKMYEAAKLLYS-----NVSNFAKLAS 1228 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHH-----hhhhhhHHHHHHHH-----HhhhHHHHHH
Confidence 555433 2333333322222221111 123333333344444 56667777776665 4556888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC--CcchhHhHHhHHhhcCC
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP--RAEHYSCLADILRRAGQ 394 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 394 (510)
.+...|+++.|...-++ .-+..||..+-.+|...+.+..|. +. |+.. -..-..-++..|...|.
T Consensus 1229 TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGY 1294 (1666)
T ss_pred HHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCc
Confidence 99999999888765443 235678988888888877665442 21 3332 33344568888899999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-cC-C------CCchhHHHHHHHHHHcCCChHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIE-LQ-P------SSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+++.+.+++....... ....|..|.-.|.+- .+++-.+-++-... .+ | +....|..+.-+|.+-..|+.|
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999988875543 334555565555543 23333333332221 11 1 1233467777777777777776
Q ss_pred H
Q 046354 466 A 466 (510)
Q Consensus 466 ~ 466 (510)
.
T Consensus 1374 a 1374 (1666)
T KOG0985|consen 1374 A 1374 (1666)
T ss_pred H
Confidence 4
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.6e-06 Score=72.96 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=106.1
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH-hhcCC--hHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL-RRAGQ--VKE 397 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 397 (510)
.++.+++...++...+.. +.|...|..+...|...|+++.|...+++..+. .+.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 566778888888877753 667778999999999999999999999999863 344777888888864 67777 599
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
|.+++++..+..| +...+..+...+...|++++|+..++++++..|.+..-+..+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999998888 667888888999999999999999999999988876554433
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.0001 Score=78.77 Aligned_cols=358 Identities=11% Similarity=-0.024 Sum_probs=210.0
Q ss_pred ccCCCChHHHHHHHhhcCCCChhh--HHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMSQPDPVS--CASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+...|++.+|.........+.... .......+...|++..+...++.+... ..+..........+...|++++|..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 345677777776666554332111 112223455678888888887776432 1123333344555667899999998
Q ss_pred HHHhhcc----CC------h--hhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 80 VFDEIYE----GN------V--YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 80 ~~~~~~~----~~------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
.++...+ .+ . .....+...+...|++++|...+++.....+....+. ......
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~~a~~ 495 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS---------------RIVATS 495 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH---------------HHHHHH
Confidence 8877632 11 1 1222233455679999999999998765322211111 111234
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC-------CCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----Chhh
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP-------NKD--IVAWNAMITAYVDAGNMAQASELFNLMPQ-------R----NVWT 207 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~ 207 (510)
.+...+...|+++.|...+++.. .+. ..++..+...+...|++++|...+++... + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566777888888888887765 111 23445667788899999999998876543 1 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
+..+...+...|++++|...+++.....- .+..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------- 610 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ--------------------------------------------- 610 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH---------------------------------------------
Confidence 44556667778999999988888754210 0100
Q ss_pred ccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHH-----HHHHhcCcCCcH
Q 046354 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFV-----GVLSDCSHAGLV 359 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~-----~li~~~~~~g~~ 359 (510)
....+..+...+...|++++|...+.+.....-. .....+. ..+..+...|+.
T Consensus 611 ---------------------~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 611 ---------------------QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred ---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 0112333445566677777777777766442100 0111110 111233446778
Q ss_pred HHHHHHHHHHHHhhCCCCCcc----hhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHHHHhhCCH
Q 046354 360 EKGRKTFNLMSRAYGFKPRAE----HYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~~~~ 428 (510)
+.|..++...... . ..... ....+..++...|+.++|...+++.... .+ ...+...+..++...|+.
T Consensus 670 ~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 670 EAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 8888776665431 1 11111 1345667788889998888888776532 11 123555666778888999
Q ss_pred HHHHHHHHHHHhcCCC
Q 046354 429 RMADYIGERLIELQPS 444 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~ 444 (510)
++|...+.+++++...
T Consensus 748 ~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 748 SEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999866544
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=6.4e-08 Score=54.71 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=18.0
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.1e-07 Score=53.76 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.1
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
.|+.||..||+.+|.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 378888888888888888888888888888877
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=6.8e-06 Score=72.18 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=122.4
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh----hHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh----hH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI----VAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY----SW 92 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~----~~ 92 (510)
.....+..+...+.+.|++++|...|+++....|+. ..+..+..++...|++++|...++.+.+ |+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356677888888999999999999999998877753 4667788899999999999999999955 3222 34
Q ss_pred HHHHHHHHcC--------CChHHHHHHHHhccccCCChh-hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHH
Q 046354 93 TSLISGYFKA--------RQVDEGRRLFDRMPLKLKNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 93 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
..+..++... |+.+.|.+.|+.+.+..|+.. .+..+..... ... .
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------------------~~~-------~- 164 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------------------LRN-------R- 164 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------------------HHH-------H-
Confidence 5555555544 788999999999988756543 2222211100 000 0
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
. ......+...|.+.|++++|...++...+ |+ ...+..+..++.+.|++++|..+++.+...
T Consensus 165 --~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 --L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0 00112455667788888888888877654 32 356778888888888888888888877653
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=2.2e-05 Score=80.33 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=126.9
Q ss_pred cChhhHHHHhcccCC-C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHH
Q 046354 291 LDVNSARLAFERLEA-K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 368 (510)
|.-+...++|++..+ . ....|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.++.+.|..++.+
T Consensus 1511 G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444544444 1 2346778888999999999999999999885 455667888899999999999999999999
Q ss_pred HHHhhCCCCC---cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--C
Q 046354 369 MSRAYGFKPR---AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL--Q 442 (510)
Q Consensus 369 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 442 (510)
+.+. -|. .....-.+..-.+.|+.+.+..+|+......| ....|+.++..-.++|+.+.+..+|++++.+ .
T Consensus 1590 AL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1590 ALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8864 343 33445556666789999999999998886666 6679999999999999999999999999854 4
Q ss_pred CCCchh-HHHHHHHHHHcCCChHHHHH
Q 046354 443 PSSSGA-YVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 443 p~~~~~-~~~l~~~~~~~g~~~~A~~~ 468 (510)
|..... |..+...-..-|+-+.+..+
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 555444 34444444444554444443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=7e-06 Score=68.38 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=139.5
Q ss_pred ccccChhhHHHHhcccCC--------CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCC
Q 046354 288 GFQLDVNSARLAFERLEA--------KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAG 357 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g 357 (510)
....+.++..+++..+.. ++. ..|..++-+....|+.+-|..+++.+... + |.+. .-..-..-+...|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhh
Confidence 667788888888887754 222 24566677778889999999999999886 4 4443 2222223345678
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
++++|.++++.+..+ -+.|..++..=+-+.-..|+--+|++-+.+..+. ..|...|.-+...|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999985 2446666766666666778877888777666544 4589999999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCC---ChHHHHHHHHHH
Q 046354 437 RLIELQPSSSGAYVLSANVHAARGE---WDEFAQVRKKME 473 (510)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 473 (510)
+++=.+|-++..+..++.++...|. .+-|+++|.+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999877774 555777777555
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=1.7e-05 Score=80.16 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.+...+..|+..+...|++++|.++.+...+ |+. ..|-.+...+.+.++.+.+..+ .+.. ..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~-------- 95 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQ-------- 95 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hccc--------
Confidence 34556677778877788888888887775554 332 3344444466667776666555 2222 1111
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChh
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 325 (510)
..++.....+...+.. .+..++..+..+|-+.|+.+
T Consensus 96 ------------------------------------------~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 96 ------------------------------------------NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred ------------------------------------------ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence 1112111111222221 12234555666666777777
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
+|..+|+++.+.. +-|....+.+...++.. +.++|.+++.++... +...+++..+.+++.++
T Consensus 134 ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 134 KLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHH
Confidence 7777777777654 44455666666666666 677777666666543 22333444444444444
Q ss_pred CCCCCc---------------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 406 PPHERD---------------------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 406 ~~~~p~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
....|+ ..++.-+-..|...++++++..+++.+++.+|.+..+...++.+|.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 333332 2334444466777889999999999999999999888888888876
No 129
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.47 E-value=0.00076 Score=61.47 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=86.0
Q ss_pred ccCCCChHHHHHHHhhcCC---CChh------hHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHH--HhcC
Q 046354 4 FGCTGKVKEATKLFDEMSQ---PDPV------SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY--VKAG 72 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~--~~~~ 72 (510)
+.+++++.+|.++|.++-+ .++. .-+.++++|. .++.+.....+....+..| ...|-.|..++ .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 4578899999999999862 2222 2345666664 4556666666666666656 34444454433 4778
Q ss_pred ChhhHHHHHHhhcc------------------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc--C----CChhhHHHH
Q 046354 73 RVDEARKVFDEIYE------------------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L----KNVVSWTTV 128 (510)
Q Consensus 73 ~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~----~~~~~~~~l 128 (510)
++++|.+.+....+ +|...-+..+..++..|.+.+++.+++++... + =+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 89999988877632 12233466778889999999999999999876 2 367777774
Q ss_pred HHHHH
Q 046354 129 VLGCA 133 (510)
Q Consensus 129 l~~~~ 133 (510)
+-.+.
T Consensus 174 vlmls 178 (549)
T PF07079_consen 174 VLMLS 178 (549)
T ss_pred HHHHh
Confidence 44443
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2.3e-05 Score=73.12 Aligned_cols=252 Identities=17% Similarity=0.135 Sum_probs=165.8
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
-+.+.|++.+|.-.|+..+ +.+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3456677777777777766 33455677777777777777777777777665 34556666666777777777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
+.++.......+- ..+..+ ...++...- +..
T Consensus 374 ~~L~~Wi~~~p~y-----~~l~~a--------------------------------------~~~~~~~~~----~s~-- 404 (579)
T KOG1125|consen 374 KMLDKWIRNKPKY-----VHLVSA--------------------------------------GENEDFENT----KSF-- 404 (579)
T ss_pred HHHHHHHHhCccc-----hhcccc--------------------------------------CccccccCC----cCC--
Confidence 7777765432110 000000 001110000 000
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHH-HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYS 383 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 383 (510)
.+. ..+....++|-++ ...+..+|+.....|.-.|--.|++++|...|+.+.. ++| |..+||
T Consensus 405 ~~~-------------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWN 468 (579)
T KOG1125|consen 405 LDS-------------SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWN 468 (579)
T ss_pred CCH-------------HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHH
Confidence 011 1122333444444 3445456777777777778889999999999999986 356 778899
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----------chhHHHH
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSS----------SGAYVLS 452 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l 452 (510)
.|.-.++...+.++|+..|.+..++.|+ +.++..|.-+|...|.+++|...|=.++.+.+.+ ...|.+|
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tL 548 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTL 548 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHH
Confidence 9999999999999999999999988896 4488888999999999999999999998665541 1346666
Q ss_pred HHHHHHcCCChHHHHH
Q 046354 453 ANVHAARGEWDEFAQV 468 (510)
Q Consensus 453 ~~~~~~~g~~~~A~~~ 468 (510)
=.++.-.++.|-+.++
T Consensus 549 R~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 549 RLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHcCCchHHHHh
Confidence 6666666766644443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=6.2e-05 Score=76.28 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
..+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.+++.+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3455566666666666666666666554 3455566666666666 666666666555
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4.8e-05 Score=63.58 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=125.2
Q ss_pred ccccChhhHHHHhcccCC--CChh-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA--KDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|+.+.|..+++.+.. |++. .-..-...+-..|++++|+++++.+.+.+ +-|..++.-=+...-..|+.-+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 778899999999988776 3322 11111223455799999999999999875 5566677665655666777778999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHh
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIE 440 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 440 (510)
-+....+ .+..|...|.-+.+.|...|+++.|.-.++++.=..| ++..+..+...+.-. .+.+.|.+.|.+.++
T Consensus 142 ~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888888 5788999999999999999999999999999875677 666777777765444 477889999999999
Q ss_pred cCCCCchhHHHH
Q 046354 441 LQPSSSGAYVLS 452 (510)
Q Consensus 441 ~~p~~~~~~~~l 452 (510)
+.|.+...+..+
T Consensus 220 l~~~~~ral~GI 231 (289)
T KOG3060|consen 220 LNPKNLRALFGI 231 (289)
T ss_pred hChHhHHHHHHH
Confidence 999665554444
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=3.9e-06 Score=77.51 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=99.7
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..++..+...++++.|..+++++.+. .| .....++..+...++-.+|.+++.+.....| +...+......+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DP--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34556666778888899999888765 24 4555678888888888888888888876666 556666667778889
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++.|..+.+++.+..|++..+|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999988776
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00015 Score=61.25 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=63.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH-HH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE-AM 399 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 399 (510)
.++..+|.-+|++|-+. .+|+..+.+....++...|++++|..+++....+ -..++.+...++-.-...|...+ ..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 45678888888888764 6888888888888888888999999988888874 34456666666665555665544 34
Q ss_pred HHHhhCCCCCCcHH
Q 046354 400 RVVSKMPPHERDHV 413 (510)
Q Consensus 400 ~~~~~~~~~~p~~~ 413 (510)
+.+.+.....|...
T Consensus 263 r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhcCCcch
Confidence 55566654455444
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0014 Score=61.07 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhc-CChhhHH---
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEAR--- 78 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~A~--- 78 (510)
+...++++.+.++++. +-.+..|..-|+...+..+++....+|.+-....-+...|...++.-.+. |+...++
T Consensus 31 qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 31 QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 4457899999999997 34678899999999999999999999999888767888888877765543 3333332
Q ss_pred -HHHHhhcc------CChhhHHHHHHHHHc---CC------ChHHHHHHHHhcccc
Q 046354 79 -KVFDEIYE------GNVYSWTSLISGYFK---AR------QVDEGRRLFDRMPLK 118 (510)
Q Consensus 79 -~~~~~~~~------~~~~~~~~li~~~~~---~g------~~~~A~~~~~~m~~~ 118 (510)
+.|+-..+ .+...|+..+..+-. .| +++...++|+++...
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 22333222 233457766665543 34 445677888888765
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=5.3e-06 Score=65.67 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 330 LFARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 330 ~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
.+++... ..|+. .....+...+...|++++|...++.+... .+.++..+..+...+.+.|++++|...++...+.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 34443 34556667777889999999999988763 3457788888899999999999999999888766
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.| +...+..+...+...|++++|...++++++.+|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 66 56778888888999999999999999999999988654
No 137
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00012 Score=66.36 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
..+-..+...++.++|+.+.+++.+ | +..+|+....++...| ++++++..++++.+...+.-. ++.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-aW~--------- 110 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-IWH--------- 110 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-HhH---------
Confidence 3334445566777778777777765 2 3344555555556666 567888887777664322111 111
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC--hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.....+ .+.|+ .+++..+++++.+ .|..+|+...-++...|++++++
T Consensus 111 -----------------------~R~~~l-----~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 111 -----------------------HRRWLA-----EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred -----------------------HHHHHH-----HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 111111 12222 2344555555544 46678888888888889999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcC---Cc----HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc----CChHH
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHA---GL----VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA----GQVKE 397 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 397 (510)
+.++++++.+ +-|...|+.....+.+. |. .+....+...+... .+-+...|+.+...+... ++..+
T Consensus 163 ~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 163 EYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchh
Confidence 9999999875 34455665554444333 22 24667777666653 344778888887777763 44567
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHHhcCCCCc
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHG------------------DVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~p~~~ 446 (510)
|.+++.+.....| +......|+..|.... ..++|.++++.+.+.+|-..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~ 307 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRR 307 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHH
Confidence 8888888765555 6667888888887532 23567777777755555443
No 138
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.33 E-value=0.0013 Score=59.85 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=108.8
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
.-..+|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-... ++.++..-+-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 345678888888888888999999999999988 6778888888887665 57889999999988764 3334444456
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCC-CCc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPH-ERD--HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.+..+.+.++-+.|..+|+...+. ..+ ...|..+|..-...|+...+..+=+++.+.-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777788899999999999966532 222 5588889998889999999999999998888875
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=1.4e-05 Score=80.00 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
++..+-.|.....+.|.+++|..+|+...+ +.|+.. ....+...+.+.+.+++|....++.... -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 477888899999999999999999999998 467665 6677788899999999999999999873 34467777889
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
..++.+.|++++|..+|++.....|+ ..++..+...+...|+.++|...|+++++...+....|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999866664 6799999999999999999999999999777666555443
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=7.8e-06 Score=63.05 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=55.8
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSS---SGAYVLSA 453 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 453 (510)
++..++..+.+.|++++|.+.+..+....|+ ...+..+...+...|+++.|...++.+....|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666665543332 2344455666666666666666666666666554 23456666
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 046354 454 NVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++...|++++|.+.++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666666666666666666653
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00016 Score=66.40 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=90.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhH-HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCC
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITF-VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQ 394 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 394 (510)
.+...|++++|+..++.++.. .|+...| ......+...++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 344668888999999888875 4555544 44456677888999999999888864 554 5566678888899999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+.+|+.+++......| |+..|..|..+|...|+..++....-+..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999998888876666 77788999999999998888877766554
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=4.7e-07 Score=64.66 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=59.3
Q ss_pred cCChHHHHHHHhhCCCCCC---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHER---DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
.|+++.|+.+++++.+..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888877776555 344556678888888888888888888 667777767777778888888888888888
Q ss_pred HHH
Q 046354 469 RKK 471 (510)
Q Consensus 469 ~~~ 471 (510)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=1.8e-05 Score=63.28 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRM 430 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~ 430 (510)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+......|+.. ....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555566666666655411110 112223344555666666666666666654443322 33345555666677777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
|...++.. ...+-.+..+...+.+|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776552 22222334466666777777777777776654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2e-06 Score=49.47 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999998873
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=1.1e-05 Score=59.11 Aligned_cols=92 Identities=20% Similarity=0.149 Sum_probs=78.6
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..++..+...|++++|...+++..+..| +...+..+...+...|++++|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45667778889999999999998876655 44677778888888999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|...++...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999988665
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.5e-06 Score=48.45 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 240 (510)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.5e-06 Score=48.03 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (510)
.+|++++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.17 E-value=4.7e-06 Score=56.06 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+...+...|++++|...|+++++..|+++..+..++.++...|++++|..+|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777777777777777777776653
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=9.4e-05 Score=59.14 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc---hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc----chh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE---ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA----EHY 382 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~ 382 (510)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+... . |++ ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHH
Confidence 355555555 4788999999999998853 3331 23333456778899999999999999986 4 433 234
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
..|...+...|++++|...++...........+......+...|++++|...|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55788889999999999999887644446667777888899999999999999875
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.9e-06 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 238 (510)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=2e-05 Score=67.66 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=87.0
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 430 (510)
+.+.+++.+|+..|.++++ +.| |+..|..=..+|.+.|.++.|++-.+......| -..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4567888899998888885 455 666667778888999999999988888887777 45588999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
|++.|+++++++|++......|-.+-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998877777777766666555
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=7.8e-06 Score=70.11 Aligned_cols=87 Identities=20% Similarity=0.126 Sum_probs=79.0
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
.-+.+.+++++|+..|.+.++..| |.+.|..-..+|.+.|.++.|++-.+.++.++|..+.+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999999998888 6677777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 046354 466 AQVRKKME 473 (510)
Q Consensus 466 ~~~~~~~~ 473 (510)
++.|++..
T Consensus 169 ~~aykKaL 176 (304)
T KOG0553|consen 169 IEAYKKAL 176 (304)
T ss_pred HHHHHhhh
Confidence 99988544
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.11 E-value=1.6e-05 Score=73.84 Aligned_cols=108 Identities=15% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
...+...|+++.|+..|+++.+. .+.+...|..+..+|.+.|++++|+..++++....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44556789999999999999874 344677888889999999999999999999987777 566888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 429 RMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
++|...|+++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988777665554433
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.08 E-value=1.4e-05 Score=54.54 Aligned_cols=63 Identities=22% Similarity=0.126 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC-CChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-EWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 473 (510)
+..+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999 7999999998665
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=3.9e-05 Score=59.08 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=70.9
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 419 (510)
++..+...+...|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|...++.+....|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765411111 1334556777777888888888888777654443 34566777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888875443
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=8.7e-05 Score=66.48 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh-cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD-CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888889999999999999998543 3344455444433 34467888899999999985 5667888999999
Q ss_pred HHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+.+.|+.+.|..+|++....-|... .|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999887655444 999999999999999999999999999888853
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=1e-05 Score=54.40 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+...+.+.|++++|.+.|+++.+..| +...+..+...+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46678899999999999999998888 666888999999999999999999999999999874
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=6.5e-05 Score=69.83 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=83.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
-...+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++.+.+. .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456677899999999999999853 445567778888889999999999999999864 2336777888899999999
Q ss_pred ChHHHHHHHhhCCCCCCcHHHHHHHHH
Q 046354 394 QVKEAMRVVSKMPPHERDHVVLGALLG 420 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~l~~ 420 (510)
++++|...|++..+..|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999878886655544443
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=9.8e-05 Score=68.41 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=94.8
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .+-+...+..-...+.+.++++.|+.+.+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66788999999999999877777778888888888889999999988864 24454555555666788899999999999
Q ss_pred HHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCC
Q 046354 368 LMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPP 407 (510)
Q Consensus 368 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (510)
++... .| +..+|..|+.+|.+.|+++.|+..+..++-
T Consensus 259 ~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 259 KAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99863 55 567899999999999999999999988873
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.0078 Score=54.63 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=55.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+.-+...|+...|.++-++.. -|+..-|...+.+++..+++++-.++... +-+|.-|..++++|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 444455565555555544331 25555666666666666666655443211 1234555666666666666
Q ss_pred hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
..+|..++.++. +..-+..|.+.|++.+|.+..-+
T Consensus 253 ~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666643 12234455666666666555443
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00011 Score=63.71 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=91.1
Q ss_pred CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
.+-|...|-.|...|...|+++.|...|.+..+..| ++..+..+..++..+ ....++..++++++.++|.++.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 355899999999999999999999999999887755 677777777775543 3568899999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH-Hhhcccccee
Q 046354 451 LSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~ 483 (510)
.|+..+...|++.+|...++.|. ......|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999998 4444455443
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.032 Score=55.75 Aligned_cols=424 Identities=13% Similarity=0.127 Sum_probs=222.9
Q ss_pred CCCChHHHHHHHhhcC--CCChhhHHHHHHHH--HhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHH
Q 046354 6 CTGKVKEATKLFDEMS--QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~ 80 (510)
.++++..|+....... .|| ..|..++.++ .|.|+.++|..+++......+ |..+...+-..|.+.+..++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4677888888888776 344 3445555554 589999999988888776544 677888888999999999999999
Q ss_pred HHhhcc--CChhhHHHHHHHHHcCCChHH----HHHHHHhccccCCChhhHHHHHHHHHhc-CCcchhhHHHHHHHHHHH
Q 046354 81 FDEIYE--GNVYSWTSLISGYFKARQVDE----GRRLFDRMPLKLKNVVSWTTVVLGCAHN-GLIAKLEVISWTTMCTGL 153 (510)
Q Consensus 81 ~~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~l~~~~ 153 (510)
+++..+ |+......+..+|+|.+.+.+ |.++++... .+...+=+++...... ...+.+-. .+.
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p---k~~yyfWsV~Slilqs~~~~~~~~~----~i~--- 169 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP---KRAYYFWSVISLILQSIFSENELLD----PIL--- 169 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cccchHHHHHHHHHHhccCCccccc----chh---
Confidence 999966 555555566677788777654 455554332 3344444444443222 11111111 011
Q ss_pred HhcCchHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhcCChHH
Q 046354 154 ERNAMTKLAREYFVQMPNKD-----IVAWNAMITAYVDAGNMAQASELFNL-----MPQRNVWTWNAMIDRYARNGPEGA 223 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~ 223 (510)
.-.|.+.++.+...+ ..-.......+...|++++|+.++.. ....+...-+.-+..+...+++.+
T Consensus 170 -----l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 170 -----LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred -----HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 122344444444211 11122234456778999999998832 222344455566778888999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhccc
Q 046354 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303 (510)
Q Consensus 224 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 303 (510)
..++-.++...|. |. |...+....+. + .....+...... ...+..+...+...+.
T Consensus 245 l~~l~~~Ll~k~~--Dd--y~~~~~sv~kl---------L-e~~~~~~a~~~~-----------s~~~~l~~~~ek~~~~ 299 (932)
T KOG2053|consen 245 LFELSSRLLEKGN--DD--YKIYTDSVFKL---------L-ELLNKEPAEAAH-----------SLSKSLDECIEKAQKN 299 (932)
T ss_pred HHHHHHHHHHhCC--cc--hHHHHHHHHHH---------H-Hhcccccchhhh-----------hhhhhHHHHHHHHHHh
Confidence 9999988888663 32 33333221111 0 111011111100 2222333333333322
Q ss_pred CCC-ChhhHHHHHHHHH---hcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 304 EAK-DVVSWTAMILAYS---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 304 ~~~-~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
... .-.+|-+=+.++. .-|+.++....|-+ +-|-.| .|..=+..|...=..+....++...... .++.
T Consensus 300 i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~ 371 (932)
T KOG2053|consen 300 IGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDS 371 (932)
T ss_pred hcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcc
Confidence 221 1112222233322 34666665544422 223222 1112222222222223333333333211 1111
Q ss_pred c-------hhHhHHhHHhhcCCh-----HHHHHHH-------hhCCC----CCCc---------HHHHHHHHHHHHhhCC
Q 046354 380 E-------HYSCLADILRRAGQV-----KEAMRVV-------SKMPP----HERD---------HVVLGALLGACRLHGD 427 (510)
Q Consensus 380 ~-------~~~~l~~~~~~~g~~-----~~A~~~~-------~~~~~----~~p~---------~~~~~~l~~~~~~~~~ 427 (510)
. -+.+.+..-.-.|.+ +....++ +.-.+ ..|. ..+.+.|+..+.+.++
T Consensus 372 s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd 451 (932)
T KOG2053|consen 372 SGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTND 451 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 1 011111111112211 1111111 11111 1221 1134667777877665
Q ss_pred ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhhcc
Q 046354 428 ---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478 (510)
Q Consensus 428 ---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 478 (510)
+-+|+-+++..+...|.+..+-..++.+|.-.|-+..|...|+.+. +.|+.
T Consensus 452 ~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 452 LTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 4568888888888899998888889999999999999999999887 66654
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=1.3e-05 Score=54.46 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=40.4
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|...|++++...|+++.....++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888876663
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.89 E-value=9e-05 Score=58.36 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
...-+-..|++++|..+|+-+.-..| +..-|..|..++...+++++|...|..+..+++++|.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 44445678999999999998765566 67778888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 046354 464 EFAQVRKKMER 474 (510)
Q Consensus 464 ~A~~~~~~~~~ 474 (510)
.|+..|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987763
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=9.3e-05 Score=60.96 Aligned_cols=95 Identities=16% Similarity=-0.009 Sum_probs=76.9
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..++..+...|++++|...+++.....|+ ..++..+...+...|++++|...+++++...|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566777778889999999999888654333 3478888899999999999999999999999998888888888
Q ss_pred HHH-------HcCCChHHHHHHHHHH
Q 046354 455 VHA-------ARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~-------~~g~~~~A~~~~~~~~ 473 (510)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887777766544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.0001 Score=60.89 Aligned_cols=83 Identities=22% Similarity=0.117 Sum_probs=65.3
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..+...+...|++++|...|++..+..|+ ...+..+...+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566777777888888888888877644332 3577788888888999999999999999999988888888888
Q ss_pred HHHHcCC
Q 046354 455 VHAARGE 461 (510)
Q Consensus 455 ~~~~~g~ 461 (510)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00022 Score=58.97 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666666777777777777777665432221 235555556666666666666666666643 12233444445
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
..++...|+...+..-++... ..+++|.+.++++++.+|++ +..++..+...|+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 555555555444332222111 22677888888888888877 55566666666543
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.00049 Score=66.95 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=38.5
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+..+..+.-.....|++++|...++++.+..|+...|..+...+...|+.++|...|+++..++|.++
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445566666666665555555555555555555556666666666666666666554
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.4e-05 Score=43.38 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 339 (510)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00012 Score=53.56 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=49.2
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 429 (510)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++......| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344445555555555555432 122223444555555556666666666665544433 3345556666666666777
Q ss_pred HHHHHHHHHHhcCC
Q 046354 430 MADYIGERLIELQP 443 (510)
Q Consensus 430 ~A~~~~~~~~~~~p 443 (510)
.|...+++..+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777666665554
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.80 E-value=0.00015 Score=63.65 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=51.6
Q ss_pred hhcCChHHHHHHHhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCC
Q 046354 390 RRAGQVKEAMRVVSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEW 462 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 462 (510)
.+.|++++|...|+.+.+..|+. ..+..+...|...|++++|...|+.+++..|+++.. +..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44566666666666665444432 345556666666667777777777666666654333 44456666666677
Q ss_pred hHHHHHHHHHHHh
Q 046354 463 DEFAQVRKKMERR 475 (510)
Q Consensus 463 ~~A~~~~~~~~~~ 475 (510)
++|.++|+.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655533
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=3.1e-05 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999888764
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.00063 Score=61.29 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHHHhc-CchHHHHHHHhhCC-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----Ch-hhHH
Q 046354 150 CTGLERN-AMTKLAREYFVQMP-----NKD----IVAWNAMITAYVDAGNMAQASELFNLMPQ-----R----NV-WTWN 209 (510)
Q Consensus 150 ~~~~~~~-~~~~~a~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~-~~~~ 209 (510)
...|... |+++.|.+.|++.. ..+ ...+..+...+.+.|++++|.++|+++.. + +. ..|-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3445555 56666666665554 111 23456677889999999999999987542 1 11 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
..+-++...||+..|.+.+++....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344667789999999999998654
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=1.9e-05 Score=53.69 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=27.0
Q ss_pred cCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 392 AGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
.|++++|.+.|+++....| +...+..+..+|.+.|++++|..+++++....|+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 4455555555555443344 3344444555555555555555555555555555433
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=9.4e-05 Score=51.05 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|.+.+++++|.+++++++..+|+++..+...+.++...|++++|.+.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777776655
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=3.6e-05 Score=52.48 Aligned_cols=66 Identities=24% Similarity=0.165 Sum_probs=57.5
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIELQP 443 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 443 (510)
++..|..+...+...|++++|+..|++..+..| +...|..+..++...| ++++|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677888899999999999999999887777 5668888899999999 79999999999999887
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0031 Score=50.36 Aligned_cols=133 Identities=13% Similarity=0.020 Sum_probs=100.6
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC---cHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER---DHVVL 415 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~ 415 (510)
..|+...-..|..+....|+..+|...|++...- -+..|+.+...+.++....+++.+|...++++-+-.| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677776777788888889999999999888774 4556788888888888888999998888887765433 23344
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-.+...+...|.+++|+..|+.++...|+. ..-...+..+.++|+.++|..-+-.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 456777888899999999999998888874 566666677888888777765554444
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.034 Score=53.94 Aligned_cols=198 Identities=12% Similarity=0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH--------------
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN-------------- 209 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------- 209 (510)
...-.+.+++.+.|.-++|.+.+-+...|. +.+..|...++|.+|.++-+...-|.+.+.-
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~ 927 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM 927 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH
Confidence 344456666666777777766665544332 3456677888888888888776655444321
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhhHHHHHHHhh--hhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQ----SRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
.-|..+.+.|++-.|-+++.+|.+ .+.+|-..--..++.++. +......-....
T Consensus 928 eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~-------------------- 987 (1189)
T KOG2041|consen 928 EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKI-------------------- 987 (1189)
T ss_pred HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence 123445566666666677766654 334443322222222221 111111111111
Q ss_pred ccccccccChhhHHHHhcccCC-------------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHH
Q 046354 284 FWDWGFQLDVNSARLAFERLEA-------------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGV 349 (510)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l 349 (510)
-+.|..++|..+++.... ....+|-+|.+-....|..+.|++.--.+... .+-|....|+.+
T Consensus 988 ----~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 988 ----DKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred ----hhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 233444444443332221 12234444555556678888777764444431 355666677766
Q ss_pred HHhcCcCCcHHHHHHHHHHHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~ 370 (510)
.-+.|....+..+-+.|-++.
T Consensus 1064 ALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1064 ALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHhhhhhhhhhHHHHHHHH
Confidence 666665555655555555544
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.00044 Score=67.28 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=102.8
Q ss_pred CCCCCchhHHHHHHhcCc-----CCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhc--------CChHHHHHHHh
Q 046354 338 GTKPDEITFVGVLSDCSH-----AGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRA--------GQVKEAMRVVS 403 (510)
Q Consensus 338 g~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 403 (510)
+.+.+...|...+++... .++...|..+|+++.+. .|+ ...+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345666777777776432 23466888888888864 565 33333333333221 22345555555
Q ss_pred hCCCC---CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 404 KMPPH---ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 404 ~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
+.... ..+...+..+.......|++++|...++++++++|+ ...|..++.++...|+.++|...+++..+--+..|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 54332 335677887877777789999999999999999995 67899999999999999999999998887777777
Q ss_pred ceeEEEe
Q 046354 481 SFSQIEV 487 (510)
Q Consensus 481 ~~~~~~~ 487 (510)
...|+++
T Consensus 488 t~~~~~~ 494 (517)
T PRK10153 488 TLYWIEN 494 (517)
T ss_pred hHHHHHh
Confidence 7766644
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.06 Score=52.32 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=29.8
Q ss_pred hhHhHHhHHhhcCChHHHHHHHh---hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVS---KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|..|.+-....|.++.|...-- ...+.-|...+|+.+.-+.+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 33445555556777777765422 222224556666666555444444444444444443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.0031 Score=56.85 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred ccc-cChhhHHHHhcccCC-----CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-----ch-hHHHHHH
Q 046354 288 GFQ-LDVNSARLAFERLEA-----KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-----EI-TFVGVLS 351 (510)
Q Consensus 288 ~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~~~~li~ 351 (510)
... |+++.|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-...+ .. .|...+-
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l 204 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL 204 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 444 566666666655443 11 22456677788888899999999988876432211 11 2223333
Q ss_pred hcCcCCcHHHHHHHHHHHHHhh-CCCCC--cchhHhHHhHHhh--cCChHHHHHHHhhCC
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAY-GFKPR--AEHYSCLADILRR--AGQVKEAMRVVSKMP 406 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 406 (510)
++...||+..|.+.+++..... ++..+ -.....|+.++-. ...++.|..-|+.+.
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4556788888888888876431 12222 2334556666643 334667777777776
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=0.0001 Score=52.43 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~ 434 (510)
.|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|..++++ .+..| +......+..++.+.|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777777766521112333444466777777777777777766 32333 223334445566677777777777
Q ss_pred HHH
Q 046354 435 GER 437 (510)
Q Consensus 435 ~~~ 437 (510)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.62 E-value=0.00021 Score=49.23 Aligned_cols=66 Identities=21% Similarity=0.134 Sum_probs=56.0
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
...|.+.+++++|.++++.+....| +...|......+...|++++|.+.+++.++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3567889999999999999988877 56677888888999999999999999999999988765443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.00093 Score=50.60 Aligned_cols=88 Identities=19% Similarity=0.048 Sum_probs=62.9
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPS---SSGAYVLSANVHA 457 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 457 (510)
+..++-..|+.++|+.+|++.....++ ...+-.+.+.+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666778888888888776654221 235666777788888888888888888877777 5555666777788
Q ss_pred HcCCChHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKM 472 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~ 472 (510)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888776543
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0028 Score=57.23 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=51.6
Q ss_pred hhcCChHHHHHHHhhCCCCCC-----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (510)
.+.|++..|.+.+.+.+...| +...|.....+..+.|+..+|+.-.+.+++++|.-..+|..-++++...++|++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655544 233444444555566666666666666666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 046354 465 FAQVRKKME 473 (510)
Q Consensus 465 A~~~~~~~~ 473 (510)
|.+.++...
T Consensus 340 AV~d~~~a~ 348 (486)
T KOG0550|consen 340 AVEDYEKAM 348 (486)
T ss_pred HHHHHHHHH
Confidence 666666554
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.55 E-value=6.1e-05 Score=42.43 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+|+++++++|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.52 E-value=0.00079 Score=52.92 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=76.3
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..-.+...+...|++++|.++|+.+..- .| +..-|-.|.-++-..|++++|+..|.......| ++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344455566789999999999888753 44 566667788888889999999999988876767 667888888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCC
Q 046354 423 RLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
...|+.+.|.+.|+.++.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999988866533
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.001 Score=54.72 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH---
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR--- 423 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~--- 423 (510)
+...+...|++++|...|+.......-++ ...++..+..++...|++++|...+++.....| ....+..+...+.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 33334444555555555554443200000 112444455555555555555555555544433 2233444444444
Q ss_pred ----hhCCHH-------HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 424 ----LHGDVR-------MADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 424 ----~~~~~~-------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
..|+++ +|...+++.++.+|++. ......+...|++
T Consensus 121 ~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 555555 55666666667777643 3333334444544
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.00074 Score=49.13 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRF-MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
+....|..+...+++.....+|+.++..|+ -|+..+|+.++.+.....
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~------------------------------- 75 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE------------------------------- 75 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc-------------------------------
Confidence 445567777888999999999999999999 899999999998763210
Q ss_pred ccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
+ +...-.++....+.+|+.|...+++|+..||+.++..+.+
T Consensus 76 -------l----------------------D~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 76 -------L----------------------DSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -------c----------------------cchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0 0011123456778899999999999999999999987654
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.47 E-value=0.15 Score=51.25 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 80 (510)
+.+.|+.++|..+++... ..|..+...+-.+|.+.++.++|..+|++.....|+......+..+|.+.+++.+-.++
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998876 24677788888889999999999999999999999988888889999998887655444
Q ss_pred HHhh
Q 046354 81 FDEI 84 (510)
Q Consensus 81 ~~~~ 84 (510)
--++
T Consensus 133 a~~L 136 (932)
T KOG2053|consen 133 ALQL 136 (932)
T ss_pred HHHH
Confidence 3333
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.00055 Score=61.40 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=102.4
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-cCChHHHHHHHhhCCCC-CCcHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR-AGQVKEAMRVVSKMPPH-ERDHVVLGALLGA 421 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 421 (510)
.+|..+++..-+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|.++|+...+. ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35777888888888899999999999853 33355666666555344 56677799999998765 4477889999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+...|+.+.|..+|++.+..-|... ..|..++..-.+.|+.+...++.+++..-.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999997666554 45899999999999999999999998854444
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.42 E-value=0.015 Score=50.81 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=93.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
....+...|++++|...|+.+... -|+.. .. -.+..++.+.++++.|...+++..+.+.-.|+.. +.....+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHH
Confidence 344455567777777777777664 23332 11 2344556677777777777777776543333322 11111111
Q ss_pred h--hc---------------CC---hHHHHHHHhhCCCCCCcHHH-----------H-------HHHHHHHHhhCCHHHH
Q 046354 390 R--RA---------------GQ---VKEAMRVVSKMPPHERDHVV-----------L-------GALLGACRLHGDVRMA 431 (510)
Q Consensus 390 ~--~~---------------g~---~~~A~~~~~~~~~~~p~~~~-----------~-------~~l~~~~~~~~~~~~A 431 (510)
+ .. .+ ..+|...|+.+.+.-|+..- - -.+..-|.+.|.+..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 1 01 11 22344445444433332110 0 1233457888999999
Q ss_pred HHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 432 DYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..-++.+++.-|+.+.. ...+..+|...|..++|..+...+.
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999888887655 6778889999999999999887664
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.35 E-value=0.0018 Score=56.93 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=72.8
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 419 (510)
.|...+....+.|++++|...|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+.+..|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888877521111 1346667888888888888888888887654443 44556667
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
..+...|+.++|..+|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7777889999999999999999998753
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.0005 Score=41.62 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
.+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.12 Score=47.06 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 422 (510)
..+.+.-+.-+...|+...|.++-.+. ++ |+...|..-+.+++..|+|++-.++-.. . -++..|.-++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K---KSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C---CCCCChHHHHHHH
Confidence 345555666667778877776654443 43 7888888899999999999988886554 2 2347778888999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
.+.|+..+|..+..++ .+..-+..|.++|+|.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888888762 2255667788999999987764433
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0068 Score=52.85 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=84.6
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCCCCC-cHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPPHER-DHVVL 415 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p-~~~~~ 415 (510)
+-|...|..|...|...|+.+.|...|....+- -.+++..+..+..++..+. ...++..+|+++...+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 566778999999999999999999999998864 3456777777777765433 35678899999988877 56677
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..|...+...|++.+|...++.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 7777889999999999999999998887763
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.32 E-value=0.14 Score=47.37 Aligned_cols=408 Identities=12% Similarity=0.057 Sum_probs=225.1
Q ss_pred HHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCCh---hhHHHHHHHHHcCCChHHHHHHHHhccccCCC
Q 046354 45 EALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV---YSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121 (510)
Q Consensus 45 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 121 (510)
+++=+++.+.+.|..+|-.|+.-+...+..++.++++++|..|-. .+|...+++-...+++.....+|.+-....-+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 356666666655889999999999999999999999999988754 57888888888889999999999998887677
Q ss_pred hhhHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHH---HHhcC-----
Q 046354 122 VVSWTTVVLGCAHNGLIAKL-----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA---YVDAG----- 188 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~---~~~~g----- 188 (510)
...|...+.-..+.+..-.. -..+|..++.+.. |+ +.....|+..+.. .-..|
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-----------~e---~~s~~~W~ey~~fle~~~~~~kwEeQ 174 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-----------FE---PQSENYWDEYGLFLEYIEELGKWEEQ 174 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-----------cc---ccccchHHHHHHHHHhccccccHHHH
Confidence 77888777765554432221 1112222221000 00 1222233333221 11222
Q ss_pred -CHHHHHHHHhhCCC-C---------ChhhHHHHHHHHHh-------cCChHHHHHHHHHHHH--CCCCC----CHhhHH
Q 046354 189 -NMAQASELFNLMPQ-R---------NVWTWNAMIDRYAR-------NGPEGAAMKLLNLMFQ--SRFMP----NETTCT 244 (510)
Q Consensus 189 -~~~~A~~~~~~~~~-~---------~~~~~~~li~~~~~-------~~~~~~A~~~~~~m~~--~g~~p----~~~~~~ 244 (510)
+.|...+.+.++.. | |-..|..=+..... .--+-.|...++++.. .|... +..|++
T Consensus 175 qrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~n 254 (660)
T COG5107 175 QRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTAN 254 (660)
T ss_pred HHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhc
Confidence 33444445555543 1 11112111111100 1123455555555543 23221 222222
Q ss_pred HHHHHh-hh--------------hhhh--hHHHHHHHHhC---CCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 245 SILTSC-EG--------------MLEN--MLAHALAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 245 ~ll~~~-~~--------------~~~~--~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
.+-... .+ +... .+...++.+.+ +.-.+.+|-.....+ ...++-+.|........
T Consensus 255 K~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~-----~~isd~q~al~tv~rg~ 329 (660)
T COG5107 255 KAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYL-----IGISDKQKALKTVERGI 329 (660)
T ss_pred cccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----hhccHHHHHHHHHHhcc
Confidence 211100 00 0000 00000001111 112222332222222 44555666665555444
Q ss_pred C--CChh------------------hHHHHHHHHHh---cCChhhHHHH------HHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 305 A--KDVV------------------SWTAMILAYSN---HGHGFQVFRL------FARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 305 ~--~~~~------------------~~~~l~~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
. |+.. +|..++..+.+ .++.+.+... ..++.-.....-...|...+....+
T Consensus 330 ~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r 409 (660)
T COG5107 330 EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLR 409 (660)
T ss_pred cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3 2110 12222222211 1111111111 1111100011123456667777777
Q ss_pred CCcHHHHHHHHHHHHHhhC-CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH-HHHHHHHHhhCCHHHHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYG-FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL-GALLGACRLHGDVRMADY 433 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~ 433 (510)
..-++.|..+|-++.+. + +.+++.++++++..++ .|+..-|..+|+-....-||...| +..+..+...++-+.|..
T Consensus 410 ~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 410 KRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 77889999999999988 6 6678899999998776 688899999999876566766655 556667778899999999
Q ss_pred HHHHHHhcCCCC--chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSS--SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|+..++.-... ...|..++.--..-|+...+..+=++|.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 999777333222 3568888888888999988888777776
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.0045 Score=46.89 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCc--hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHh
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDE--ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILR 390 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 390 (510)
...++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345666788888888888888887765542 3555666777888888888888888876521111 2222233445667
Q ss_pred hcCChHHHHHHHhhCC
Q 046354 391 RAGQVKEAMRVVSKMP 406 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~ 406 (510)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788888887765443
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0029 Score=46.13 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCchhHHHHHHhcCcCC--------cHHHHHHHHHHHHHhhCCCCCcc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAG--------LVEKGRKTFNLMSRAYGFKPRAE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 380 (510)
+....|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. .+-..+.+++.+... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344556677777999999999999999999 899999999998876432 244577888999888 8999999
Q ss_pred hhHhHHhHHhh
Q 046354 381 HYSCLADILRR 391 (510)
Q Consensus 381 ~~~~l~~~~~~ 391 (510)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0085 Score=50.80 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=105.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH-----h
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-----C 384 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 384 (510)
.-+.++..+.-.|.+.--+..+++.++...+.++.....|.+.-.+.||.+.|..+|+...+. .-..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345667777778888888999999998765667777788888888999999999999988776 4444444433 3
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....|.-++++..|...+.+++..+| ++...|.-.-+..-.|+...|.+..+.+++..|.....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34456667889999999999987766 55555655555566799999999999999999886544
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0027 Score=59.34 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCC-CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHH
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMP-NK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMID 213 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~ 213 (510)
.....+++.+....+.+.+..++.+.. .| -..|..++|+.|.+.|..++++.+++.=.. ||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 344455666677777888888877766 22 234667999999999999999999988766 99999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
.+.+.|++..|.++..+|...+...+..|+...+.+|...
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888889998888887665
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.24 E-value=0.0029 Score=59.17 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=83.4
Q ss_pred ccccChhhHHHHhcccCC-C-----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA-K-----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 361 (510)
....+++.+..++-+... | ...+..+++..|...|..+.++.+++.=...|+-||..|++.|+..+.+.|++..
T Consensus 77 ~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~ 156 (429)
T PF10037_consen 77 ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKS 156 (429)
T ss_pred CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHH
Confidence 556667777777776654 1 1235568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
|.++...|... ....++.++..-+.+|.+.
T Consensus 157 A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 157 AAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99998888776 6666777766555555554
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.0056 Score=48.99 Aligned_cols=61 Identities=28% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556677788889999999999999999999999999999999999999999999999987
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.043 Score=52.76 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=56.5
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH--------
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV-------- 414 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------- 414 (510)
..+...+...+-+...+..|.++|..+-.. .++++.....++|++|..+-++.++..|+...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 345555555555666777788888877543 45777888889999999998888876665431
Q ss_pred ---HHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 415 ---LGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 415 ---~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
|...-.+|.+.|+-.+|.++++++-
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1222244556666666666666553
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.031 Score=48.91 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 179 AMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.+...|.+.|.+.-|..-++.+.+ |+ ......++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345667888888877777777665 33 3456677788888888888877766553
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.18 E-value=0.0019 Score=59.87 Aligned_cols=63 Identities=14% Similarity=-0.021 Sum_probs=30.9
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
...++.+..+|.+.|++++|+..|++..+..|+.. +|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444455555555555555555555444444322 2455555555555555555555555543
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.004 Score=51.51 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=81.1
Q ss_pred hhhHHHHhccc--CCCChhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC--------
Q 046354 293 VNSARLAFERL--EAKDVVSWTAMILAYSN-----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-------- 357 (510)
Q Consensus 293 ~~~a~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------- 357 (510)
+..-...|+.. ...+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 44778889999988875 4778888888999999999999999999999875422
Q ss_pred --------cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 358 --------LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 358 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+.+-|++++++|... |+.||.+++..+++.+.+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 456789999999887 999999999999999877654
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.02 Score=47.58 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHhhC--CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhC
Q 046354 195 ELFNLM--PQRNVWTWNAMIDRYARN-----GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267 (510)
Q Consensus 195 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (510)
..|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.+|...-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP---------------- 98 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP---------------- 98 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC----------------
Confidence 445544 336777787788777653 666667778888999999999999998887651
Q ss_pred CCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
....+... .+.++..-| -.+-+-|++++++|...|+-||..|+.
T Consensus 99 --Kg~fvp~n--------------------------------~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~ 142 (228)
T PF06239_consen 99 --KGKFVPRN--------------------------------FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQ 142 (228)
T ss_pred --CCCccccc--------------------------------HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 11111000 011111111 234567899999999999999999999
Q ss_pred HHHHhcCcCCcH
Q 046354 348 GVLSDCSHAGLV 359 (510)
Q Consensus 348 ~li~~~~~~g~~ 359 (510)
.++..+.+.+.+
T Consensus 143 ~ll~iFG~~s~p 154 (228)
T PF06239_consen 143 MLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhccccHH
Confidence 999999887654
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.11 E-value=0.0041 Score=46.47 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHcCCC
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA----YVLSANVHAARGEW 462 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~ 462 (510)
++...|+++.|++.|.+.....| ....||.-..++.-+|+.++|..-+++++++..+...+ |..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667888888888887776665 66788888888888888888888888888776554333 67777778888888
Q ss_pred hHHHHHHHHHH
Q 046354 463 DEFAQVRKKME 473 (510)
Q Consensus 463 ~~A~~~~~~~~ 473 (510)
+.|..-|+...
T Consensus 132 d~AR~DFe~AA 142 (175)
T KOG4555|consen 132 DAARADFEAAA 142 (175)
T ss_pred HHHHHhHHHHH
Confidence 88888887665
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0017 Score=45.30 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIEL----QPSS---SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+++.+...|...|++++|+..|++++++ .+++ ..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888889999999999988833 2222 2337788888999999999999888765
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.07 E-value=0.022 Score=45.70 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
|++..--.|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+...---++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44445556788889999999999999998764355667788888888889999999999999987652111145666678
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.+.+...|+.++|+..|+...+.-|+...--.....+.++|+..+|..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 899999999999999999888777776655555566677776666554444433
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.06 E-value=0.01 Score=45.91 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=45.7
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....+.|++++|.+.|+.+...-| ....--.++.+|.+.|++++|...+++.+++.|.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 334567888888888877765433 33455667788888888888888888888888887766
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0044 Score=53.27 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=65.1
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS---GAYVLSA 453 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 453 (510)
.|+.-+.. .+.|++..|...|....+.-| ....+--|..++...|++++|..+|..+.+-.|+++ ..+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 356667777777766654322 122333377777888888888888888886666554 4477777
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 454 NVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+..+.|+.++|...|+.+.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 778888888888888887776555544
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0089 Score=54.22 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=79.5
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.++..+.-++.+.+++.+|++...+.....| |....-.=..+|...|+++.|+..|+++++++|+|-.+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3567788899999999999999999887755 777888888999999999999999999999999998778888777666
Q ss_pred cCCChH-HHHHHHHHH
Q 046354 459 RGEWDE-FAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~-A~~~~~~~~ 473 (510)
..+.++ ..++|..|.
T Consensus 338 ~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555544 478888887
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.046 Score=46.55 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=101.4
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCc-----HHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERD-----HVVLGA 417 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~-----~~~~~~ 417 (510)
..+.++..+.-.|.+.-....+.+..+. .-+.++.....|.+.-.+.|+.+.|...|++..+. ..+ ......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666777788888888999999885 44557888889999999999999999999855422 222 223333
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
....+.-.+++..|...+.+....+|.++.+-..-+-++.-.|+..+|++.++.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677899999999999999999999888888888888999999999999887
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.024 Score=51.44 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=94.0
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHH---HHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------CCcH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLM---SRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------ERDH 412 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~ 412 (510)
..|..|...|--.|+++.|+...+.- .+.+|-+. ....+..+..++.-.|+++.|.+.|+..... ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999988765432 22333332 3456778889999999999999998765321 2234
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHH----hcCC--CCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLI----ELQP--SSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
....+|...|.-..++++|+..+.+-+ ++.. .....+..|++++...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456678888888889999999888766 2322 234558899999999999999999888766
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.85 E-value=0.11 Score=48.78 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCc--HHHHHHHHHHHHh
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERD--HVVLGALLGACRL 424 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~ 424 (510)
.+..++-+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+..+. -|. ..+|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3555566778888888888888765222223446667888888888888888888776543 333 2355554444333
Q ss_pred hCC---------------HHHHHHHHHHHHhcCCCCchhHHHHH------HHHHHcCCChHHHHH
Q 046354 425 HGD---------------VRMADYIGERLIELQPSSSGAYVLSA------NVHAARGEWDEFAQV 468 (510)
Q Consensus 425 ~~~---------------~~~A~~~~~~~~~~~p~~~~~~~~l~------~~~~~~g~~~~A~~~ 468 (510)
.++ -..|.+...++.+.+|..|.....+= ..+.+.|+ .||+.+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaY 407 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAY 407 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHH
Confidence 332 13466778888888887765432211 12455564 555544
No 218
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.84 E-value=0.5 Score=45.59 Aligned_cols=384 Identities=14% Similarity=0.134 Sum_probs=222.3
Q ss_pred HHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh-hHHHHHHHHHcCCChHHHHHHHHhccccCC-Ch
Q 046354 47 LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY-SWTSLISGYFKARQVDEGRRLFDRMPLKLK-NV 122 (510)
Q Consensus 47 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 122 (510)
.++.......+...+..+|.---...+.+.+..+++.+.. |... -|-.....=.+.|..+.+.++|++-....| ..
T Consensus 34 ~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv 113 (577)
T KOG1258|consen 34 YWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV 113 (577)
T ss_pred HhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Confidence 3333333334555566666544444555677777777754 4433 344555555678889999999998877533 12
Q ss_pred hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC------CChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN------KDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
..|.. | +.......|+.+...+.|+.+.. .+...|...+..-..++++.....+
T Consensus 114 dlW~~------------------Y--~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~i 173 (577)
T KOG1258|consen 114 DLWLS------------------Y--LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANI 173 (577)
T ss_pred HHHHH------------------H--HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHH
Confidence 11211 1 12333467888888888888761 2345677777777888899999999
Q ss_pred HhhCCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHC---C-CCCCHhhHHHHHHHh-------------
Q 046354 197 FNLMPQRNVWTWNAMIDRYAR---------NGPEGAAMKLLNLMFQS---R-FMPNETTCTSILTSC------------- 250 (510)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~---g-~~p~~~~~~~ll~~~------------- 250 (510)
++++.+-....++..-.-|.+ ....+++.++-...... + ..+........+...
T Consensus 174 yeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 174 YERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 999888444444444433332 23456666555444321 0 011111111111100
Q ss_pred ----hhhhh---hhHHHHHHHHhC-----------C----CcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC-
Q 046354 251 ----EGMLE---NMLAHALAIRLG-----------F----EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD- 307 (510)
Q Consensus 251 ----~~~~~---~~~~~~~~~~~~-----------~----~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 307 (510)
..... ...........+ + ++....|...+..- .+.|+.+...-.|++..-|-
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~-----i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFE-----ITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhh-----hhcccHHHHHHHHHHHHhHHh
Confidence 00000 000000001111 1 11223445555555 77888888888888776642
Q ss_pred --hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chh
Q 046354 308 --VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK--PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHY 382 (510)
Q Consensus 308 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 382 (510)
...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+++.|..+++.+... . |+. ..-
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~ 403 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVV 403 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhH
Confidence 234555555555558888888887776654332 2222333332 34568999999999999886 3 543 333
Q ss_pred HhHHhHHhhcCChHHHH---HHHhhCCCCCCcHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 383 SCLADILRRAGQVKEAM---RVVSKMPPHERDHVVLGALLGA-----CRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
..-+....+.|..+.+. +++....+..-+..+...+.-- +...++.+.|..++.++.+..|++-..|..++.
T Consensus 404 l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 404 LRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred HHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 33455567888888888 6665555333333333333322 344689999999999999999999888999988
Q ss_pred HHHHcC
Q 046354 455 VHAARG 460 (510)
Q Consensus 455 ~~~~~g 460 (510)
.....+
T Consensus 484 ~~~~~~ 489 (577)
T KOG1258|consen 484 FELIQP 489 (577)
T ss_pred HHHhCC
Confidence 876666
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.51 Score=46.68 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=75.1
Q ss_pred CcccCCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChh--hHHHHHH-hccccCCChhHHHHHHHHHHhcCChh
Q 046354 2 SQFGCTGKVKEATKLFDEMSQPD---PVSCASMITVFLRNHDLP--KAEALFR-AMPESQRNIVAESAMIDGYVKAGRVD 75 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--~A~~~~~-~~~~~~p~~~~~~~li~~~~~~~~~~ 75 (510)
+.+...+.+..|+++-..+..|- ...|.....-+.+..+.. ++++..+ ++...-.....|..+.+.....|+++
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~ 524 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFE 524 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHH
Confidence 34566788888998888887665 566677777777664332 2222222 22221124456777888888889999
Q ss_pred hHHHHHHhhccC--------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 76 EARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 76 ~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.|..+++.=+.. +..-+...+.-....||.+-...++-++.+.
T Consensus 525 LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 525 LARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999888764331 2334556666677788887777777766653
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.77 E-value=0.025 Score=48.08 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=38.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFA 466 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 466 (510)
+...|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3456788999999999999999999988665 667778899999887544
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.77 E-value=0.3 Score=41.97 Aligned_cols=165 Identities=16% Similarity=0.086 Sum_probs=105.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR- 391 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 391 (510)
+..-.+.|++++|...|+.+.... -+-...+...++.++-+.++++.|....++..+.++-.|+.. |...+.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 344456788888888888887642 122234555666677788888888888888887766666543 2223333322
Q ss_pred ------cCChHHHHHH---H----hhCCCC--CCcHHHH------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 392 ------AGQVKEAMRV---V----SKMPPH--ERDHVVL------------GALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 392 ------~g~~~~A~~~---~----~~~~~~--~p~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..+...+.+. | ++.+.. .||...- ..+..-|.+.|.+..|..-++++++.-|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 1222222222 2 233322 2232211 22345688999999999999999988777
Q ss_pred Cchh---HHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 445 SSGA---YVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 445 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+.+ +..+.++|...|..++|.+.-+-+..+.+..|
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 6655 56677889999999999999888876666655
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.45 Score=43.32 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=79.9
Q ss_pred hHHHHHHHHH--cCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHh
Q 046354 91 SWTSLISGYF--KARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167 (510)
Q Consensus 91 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~ 167 (510)
.|..|-.+++ -.||-..|.++-.+..+. ..|......++. .++-.-.|+++.|.+-|+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe-------------------AQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE-------------------AQAALLEGDYEDARKKFE 144 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH-------------------HHHHHhcCchHHHHHHHH
Confidence 3555555554 356777777766665543 233333222222 233445688888888888
Q ss_pred hCC-CCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 168 QMP-NKDIV--AWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 168 ~~~-~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
.|. .|... -...|.-.--+.|+.+.|...-+..-. | -...+...+...+..|+++.|+++++.-+..
T Consensus 145 AMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 145 AMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 887 33222 122333334567888888888777655 3 3577889999999999999999999887654
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.72 E-value=0.013 Score=49.87 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=70.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC---chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPD---EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (510)
...+...|++.+|...|+.+...- +-+ ....-.++.++-+.|+++.|...++...+.+.-.|... +.....+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344555666666666666666541 111 12333445555566666666666666665432222110 1111111111
Q ss_pred cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----------------HHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-----------------YVLSAN 454 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 454 (510)
...... .+ ......+...+|...|+..+...|+++.. -..++.
T Consensus 90 ~~~~~~---~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPG---IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHH---HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc---ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00122234456666666666666665433 234567
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 455 VHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.|.+.|.+..|..-++.+.+..+..|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 79999999999999998886665544
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.17 Score=46.65 Aligned_cols=165 Identities=19% Similarity=0.136 Sum_probs=103.8
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCCC-C------hhhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCc
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-D------VVSWTAMILAYSN---HGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
+...++..| ....+++...++.+.+... + ...--...-++.+ .|+.++|+.++..+....-.+++
T Consensus 143 iv~~lllSy-----RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 143 IVINLLLSY-----RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHHHHh-----hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 333455556 8888999999999988773 1 1122234455666 89999999999996666667888
Q ss_pred hhHHHHHHhc---------CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC-hH---HHHHHH---hh---
Q 046354 344 ITFVGVLSDC---------SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ-VK---EAMRVV---SK--- 404 (510)
Q Consensus 344 ~~~~~li~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~--- 404 (510)
.+|..+.+.| ......+.|...|.+.-+ +.|+...--.++..+...|. ++ +..++- ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 8888777654 223346677777776543 34544333233333444443 22 222222 11
Q ss_pred ---CCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 405 ---MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 405 ---~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..+...+--.+.+++.++.-.|+.++|.+.++++.++.|+..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111122344557788888889999999999999998877654
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.092 Score=47.86 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=59.0
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhC
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHG 426 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 426 (510)
..+.|.+..|.+.+.+.+ ++.| +...|.....+..+.|+..+|+.-.+...++.|. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 356778888888887776 3444 3445666666677888888888888877744432 223333344556668
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 046354 427 DVRMADYIGERLIELQPS 444 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~ 444 (510)
+|++|++-|+++.+...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 888888888888755544
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.54 E-value=0.2 Score=48.43 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=50.3
Q ss_pred hhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
.+-+.++-.++...+..+...+..-+-+...+.-|.++|+.|-.. .++++.....+++.+|..+-+...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 333333333333333333333334444445555566666555321 234555566666666665555443
Q ss_pred hCCCCCcch-----------hHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 373 YGFKPRAEH-----------YSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 373 ~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+.|++.. |.-.-.+|.++|+-.+|.++++++.
T Consensus 801 -e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 801 -EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 22333221 1112345667777778888877776
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.02 Score=43.94 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc---------------CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKS---------------GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 346677788888888888777777654311 12344555555555555555555555555555555
Q ss_pred hCCCCCcchhHhHHh
Q 046354 373 YGFKPRAEHYSCLAD 387 (510)
Q Consensus 373 ~~~~~~~~~~~~l~~ 387 (510)
++++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 554445455544443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.16 Score=42.96 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCC-Ch------hHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHH
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQR-NI------VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 98 (510)
..|.....+|....++++|...+.+..+..- +. ..|...+-..-....+.++..+++ --...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~e-----------KAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYE-----------KASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHH
Confidence 4566666778778888888887777664311 11 122222222223333444444433 34445
Q ss_pred HHcCCChHHHHHHHHhcccc----CCChh--hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 99 YFKARQVDEGRRLFDRMPLK----LKNVV--SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 99 ~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
|..+|.++.|-..+++.-+. .|+.. .|..-+... ..++...--...+....+.+.+...+.+|-..+.+-.
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv-e~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV-EEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-hccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 66666665555555444332 23211 121111111 1122222223344444555555555555544443332
Q ss_pred ------CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhcCChHHHHHHH
Q 046354 171 ------NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQ-------RNVWTWNAMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 171 ------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~ 228 (510)
-++. ..|...|-.|.-..++..|.+.++..-+ .+..+...|+.+| ..|+.+++.+++
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1121 2344555566667778888888777332 3456666777666 456666655443
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.1 Score=46.26 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=110.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH----hHHhHHhhcCCh
Q 046354 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS----CLADILRRAGQV 395 (510)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 395 (510)
..|++.+|...|+++.+. .|.|...+...=.+|...|+...-...++++.. ...|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357777888888888775 577777777777888888888888888888775 3455654443 344455678889
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHcCCChHHHHHHH
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS----SGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
++|++.-++..+.+| |.-.-.++...+.-.|+.+++.+...+--..-..+ ...|-..+-.+.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999988888886665 44455666667777788888888777653211111 1125555566777788999999988
Q ss_pred HHH-Hhhccccc
Q 046354 471 KME-RRVKKVAS 481 (510)
Q Consensus 471 ~~~-~~~~~~p~ 481 (510)
.-. +...+..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766 66666555
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.012 Score=53.47 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC----------------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH----------------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
...|.+.|++..|..-|+++... ..-..++..+..+|.+.+++..|++..+++++++|+|+...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34566777777777776654321 12345678888899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+.-+.+|...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9999999999999999999998773
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.41 E-value=0.73 Score=42.02 Aligned_cols=270 Identities=18% Similarity=0.121 Sum_probs=167.7
Q ss_pred cCchHHHHHHHhhCC---CCChhHHHHHHH--HHHhcCCHHHHHHHHhhCCC-CChh--hHHHHHHHHHhcCChHHHHHH
Q 046354 156 NAMTKLAREYFVQMP---NKDIVAWNAMIT--AYVDAGNMAQASELFNLMPQ-RNVW--TWNAMIDRYARNGPEGAAMKL 227 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~~~~~~A~~~ 227 (510)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+.+.|.+-|+.|.. |... ....|.-.-.+.|+.+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 455556665554433 334333333333 23446888888888888876 3322 233344444567777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--
Q 046354 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-- 305 (510)
Q Consensus 228 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 305 (510)
-+..-..- | .-+-.+.+.+... +..|+++.|+++.+.-..
T Consensus 177 Ae~Aa~~A--p-------------------------------~l~WA~~AtLe~r-----~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 177 AERAAEKA--P-------------------------------QLPWAARATLEAR-----CAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHhhc--c-------------------------------CCchHHHHHHHHH-----HhcCChHHHHHHHHHHHHHH
Confidence 66654321 1 1222333444444 899999999999986654
Q ss_pred ---CChh--hHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCchh-HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 306 ---KDVV--SWTAMILAYSN---HGHGFQVFRLFARMLKSGTKPDEIT-FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 306 ---~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+++. .-..|+.+-+. ..++..|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---e 293 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---E 293 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---C
Confidence 3332 12223332211 2345555555544444 5677653 334456788999999999999999764 5
Q ss_pred CCcchhHhHHhHHhhcCChHHH--H--HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEA--M--RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
|-+.+.. +..+.+.|+.... . +-++.|+ ..+....-.+..+....|++..|..-.+......|.. +.|..+
T Consensus 294 PHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk--~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLl 368 (531)
T COG3898 294 PHPDIAL--LYVRARSGDTALDRLKRAKKLESLK--PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLL 368 (531)
T ss_pred CChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHH
Confidence 6665543 3444566763322 1 1233343 3355666777788888999999999999999999986 688889
Q ss_pred HHHHHH-cCCChHHHHHHHHHH
Q 046354 453 ANVHAA-RGEWDEFAQVRKKME 473 (510)
Q Consensus 453 ~~~~~~-~g~~~~A~~~~~~~~ 473 (510)
+.+-.. .|+-.++...+-+..
T Consensus 369 AdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHh
Confidence 888655 599999999888666
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.35 E-value=0.038 Score=42.85 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH--HHHHHHHHHH--hh----
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV--VLGALLGACR--LH---- 425 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~--~~---- 425 (510)
+.|+++.|.+.|+.+...+...| .....-.|+.+|.+.|++++|...+++..++.|++. -|-..+.++. ..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 44556666666666655432222 223334455566666666666666655554444221 1222222211 11
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCc
Q 046354 426 -----------GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 426 -----------~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+....|...|+.+++.-|++.
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 225677888888888888764
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.33 E-value=0.24 Score=48.17 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=105.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC-CCCC-----chhHHHHHHhcC----cCCcHHHHHHHHHHHHHhhCCCCCcch
Q 046354 312 TAMILAYSNHGHGFQVFRLFARMLKSG-TKPD-----EITFVGVLSDCS----HAGLVEKGRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (510)
..++....-.||-+.+++.+.+..+.+ +.-. ...|...+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 334444444566666666666554421 1111 012333333332 356778899999999875 466555
Q ss_pred hH-hHHhHHhhcCChHHHHHHHhhCCCC-----CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-HHHHHH
Q 046354 382 YS-CLADILRRAGQVKEAMRVVSKMPPH-----ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-YVLSAN 454 (510)
Q Consensus 382 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~l~~ 454 (510)
|. .-.+.+...|++++|++.|++.... +.....+--+...+....++++|...+.++.+.+.-+... +...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 53 3456677899999999999976642 2245566777888888999999999999999876655444 444556
Q ss_pred HHHHcCCC-------hHHHHHHHHHH
Q 046354 455 VHAARGEW-------DEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~-------~~A~~~~~~~~ 473 (510)
++...|+. ++|.+++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 67889998 88888888777
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.29 E-value=0.0081 Score=41.88 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---------RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+++.+...|...|++++|+..|++..+ ++ ..+++.+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777777777777777766543 22 45678888888899999999988887643
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.25 E-value=0.041 Score=51.38 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
..+|.+.-+...+. -+.|+.....+..+..-.|+++.|..+|++.....||.. +|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444432 122444445555555555556666666666665555433 444444445555666666666666
Q ss_pred HHhcCCCCchh
Q 046354 438 LIELQPSSSGA 448 (510)
Q Consensus 438 ~~~~~p~~~~~ 448 (510)
.++++|.....
T Consensus 398 alrLsP~~~~~ 408 (458)
T PRK11906 398 SLQLEPRRRKA 408 (458)
T ss_pred HhccCchhhHH
Confidence 66666655443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.022 Score=53.04 Aligned_cols=63 Identities=25% Similarity=0.089 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...++.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|+..+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55577777777777777777777777777777777643 7777777777777777777777666
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.15 E-value=2.2 Score=44.93 Aligned_cols=134 Identities=11% Similarity=-0.009 Sum_probs=64.6
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
-+.|.+.+|..++..-.+.--..|.+....+.+.+.+++|.-.|+..-+ ..-.+.+|...|++.+|+.+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3444444444444333222233444444555555666666666554321 1123455666666666666655
Q ss_pred HHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
++.. +-.--..+-..|+.-+...++.-+|-++..+.. .+|.. .+..+++...+++|.++....
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~-sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL-SDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh-cCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 5432 100011112345555666666666666666555 12211 123344445566666666543
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.03 E-value=0.83 Score=39.51 Aligned_cols=182 Identities=18% Similarity=0.109 Sum_probs=124.7
Q ss_pred ccccChhhHHHHhcccC-----CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH-hcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLE-----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS-DCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~ 361 (510)
...+++..+...+.... ......+......+...+++..+...+.........+ ......... .+...|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEE 148 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHH
Confidence 55566666666655543 2334456666677777788888888888887643332 122222223 6778889999
Q ss_pred HHHHHHHHHHhhCCCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
+...++.... ..| ....+......+...++.+.+...+.+.....|+ ...+..+...+...+++..|...+
T Consensus 149 a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 149 ALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHH
Confidence 9999888843 232 2233333444466778899999888888766554 567777788888888899999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.......|.....+..++..+...|.++++...+++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988888755566667777667777888888877665
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.01 E-value=0.72 Score=39.71 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCC----ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C--ChhhHHHHH
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQR----NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G--NVYSWTSLI 96 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~li 96 (510)
...|+.-+. -.+.|++++|...|+.+..+.| ...+--.++-++.+.+++++|...+++... | ....|-..|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344555554 4488999999999999988766 344555667778888999999988888854 2 223455555
Q ss_pred HHHHc-------CCChHHHHHHHHhc---cccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHH
Q 046354 97 SGYFK-------ARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166 (510)
Q Consensus 97 ~~~~~-------~g~~~~A~~~~~~m---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~ 166 (510)
.+++. ..|...+.+.+..+ ...-||..--. .|....
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~----------------------------------dA~~~i 159 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP----------------------------------DAKARI 159 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh----------------------------------hHHHHH
Confidence 55442 22333333333333 33344432100 000000
Q ss_pred hhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 167 VQMPNKDIV--AWNAMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 167 ~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
..+ .|.. .=..+.+.|.+.|.+..|..-++++.+ ++ ....-.+..+|.+.|-.++|.+.-.-+..
T Consensus 160 ~~~--~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 160 VKL--NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 000 0000 112355678888888888888887776 22 24456677788888888888776655544
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.04 Score=43.99 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH----hhCCCCCcchhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR----AYGFKPRAEHYS 383 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 383 (510)
....++..+...|++++|..+.+.+.... |-+...|..+|.++...|+...|.+.|+.+.+ ..|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999999864 66778999999999999999999999887754 348888876643
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.96 E-value=1.4 Score=41.14 Aligned_cols=205 Identities=11% Similarity=0.138 Sum_probs=108.7
Q ss_pred hhhHHHHHHHH--HhcCChhhHHHHHHhcccc----C------------CChhHHHHHHHHHHhcCChhhHHHHHHhhcc
Q 046354 25 PVSCASMITVF--LRNHDLPKAEALFRAMPES----Q------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86 (510)
Q Consensus 25 ~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~----~------------p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 86 (510)
...|-.+..++ -+.+++.+|.+.+.....+ . +|-..-+..++++...|++.+++.+++++.+
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 45566666554 3789999999988776654 1 1222334667888999999999999999844
Q ss_pred --------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCCh-hhHHHHHHHHHhcCCcchh--------hHHHHHH
Q 046354 87 --------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNV-VSWTTVVLGCAHNGLIAKL--------EVISWTT 148 (510)
Q Consensus 87 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-~~~~~ll~~~~~~~~~~~a--------~~~~~~~ 148 (510)
-++.+|+.++-.+.++ .|-++++. .-|. .-|..++-.|.+.-+.-+. .......
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFST 228 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHH
Confidence 3778898877666543 22222221 0110 1122222222221111010 1111122
Q ss_pred HHHHHH-----hcCchHHHHHHHhhCC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHH
Q 046354 149 MCTGLE-----RNAMTKLAREYFVQMP-NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQ--------RNVWTWNAMID 213 (510)
Q Consensus 149 l~~~~~-----~~~~~~~a~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 213 (510)
++.... +..-+-.+.+.++.-- .|+- -+...++..+.. +.+++..+-+.+.. .=+.+|..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222111 1112223444443332 3432 233344444444 44444444333321 34567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNET 241 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 241 (510)
...+.++...|.+.+.-+.- +.|+..
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~--ldp~~s 332 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKI--LDPRIS 332 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHh--cCCcch
Confidence 99999999999888877655 445444
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.053 Score=46.82 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=71.3
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~ 419 (510)
.|+..+.. ...|++..|.+.|....+.+.-.+ .+..+-.|.+.+...|++++|..+|..+.+..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555544 345678888888888877431111 344556688888888888888888776654422 345666777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....+.|+.++|..+|+++.+.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77788888888888888888888887644
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.93 E-value=0.014 Score=52.86 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------C
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---------R 203 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~ 203 (510)
...++..+.+++.-.|+++.|.+.|+... .....+..+|.+.|.-..++++|+..+.+-.. -
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55566777777788888888888777644 12233455667777777778888777654322 2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....+-.|..+|...|..++|+.+.+.-++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3456777888888888888888877766553
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.27 Score=41.66 Aligned_cols=169 Identities=11% Similarity=0.010 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHh
Q 046354 58 IVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134 (510)
Q Consensus 58 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~ 134 (510)
...|..-..+|...+++++|...+.+..+ .|...|++ ...++.|.-+.+++.+...-+..+.--...|..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566666778888999999998888753 33333322 223445555555555432223334555556777
Q ss_pred cCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---C---C---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 046354 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---N---K---DIVAWNAMITAYVDAGNMAQASELFNLMPQ--- 202 (510)
Q Consensus 135 ~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 202 (510)
.|..+.+.. +.....+ .....+++.|++++++.. . . -...+....+.+.+..++++|-..|.+-..
T Consensus 104 ~GspdtAAm-aleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 104 CGSPDTAAM-ALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred hCCcchHHH-HHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 777766411 1111111 234567888888887765 1 1 123455666777777888877666654432
Q ss_pred -----CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 203 -----RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 203 -----~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
++. ..|-..|-.+.-..++..|.+.+++--+.+
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 221 235566666777788889988888755443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.79 E-value=0.36 Score=45.41 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=53.6
Q ss_pred ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 394 QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
...+|.++-++..+..| |+.+...+..+....++++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666665555 5556555666556666677777777777777777777777777777777777777777776
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.77 E-value=0.56 Score=43.32 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCCchhHHHHHHhcCc---CCcHHHHHHHHHHHHHhhCCCCCcchhHh
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSG---TKPDEITFVGVLSDCSH---AGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
.-.++-+|....+++.-.++.+.|...- +.-+...--...-++.+ .|+.++|++++..+... .-.+++.++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3355557888999999999999998641 11111111123334555 89999999999996665 67788899988
Q ss_pred HHhHHh----h-----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCC-HH---HHHHHH---HHHH-hc---CCC
Q 046354 385 LADILR----R-----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD-VR---MADYIG---ERLI-EL---QPS 444 (510)
Q Consensus 385 l~~~~~----~-----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~~~-~~---~p~ 444 (510)
+...|- . ....++|+..|.+.-+..|+...--.++..+...|. .+ +..++. ...+ +. .+.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 887763 2 224788999999887777766544444443333332 22 222222 1111 11 121
Q ss_pred -CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 -SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..-+.+++.+..-.|+.++|.+..++|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 122266788889999999999999999883
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.76 E-value=0.024 Score=31.78 Aligned_cols=32 Identities=28% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.+|..+...|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.052 Score=44.20 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=72.4
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCc-----chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
.-+...|++++|..-|..+... +++.. ..|..-.-++.+.+.++.|+.-..+.+++.| .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3466788899988888888873 34432 2344445567788888888888888886766 33344445567778
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
...+++|+.-|+++++.+|....+-...+.+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8888889999998888888876554444443
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.72 E-value=0.036 Score=30.99 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777788888888888888888887764
No 250
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.69 E-value=2.8 Score=42.56 Aligned_cols=114 Identities=8% Similarity=-0.049 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHHHHc-CCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 322 GHGFQVFRLFARMLKS-GTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~-g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
.+.+.|..++...... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666655332 2222221 1222222222222134444544443321 12334444444454566666666
Q ss_pred HHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 399 MRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 399 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
...+..|+.... ...-.-=+..++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666653211 1222222344444566666666666665
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.66 Score=40.77 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=57.5
Q ss_pred cCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhH--HHHHHHHHHhcCChhhHHH
Q 046354 5 GCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--ESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~A~~ 79 (510)
...|++.+|..+|.... +.+...-..++++|...|+.+.|..++..+.....+... ...-|..+.+.....+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34555566666555554 223444455566666666666666666666554222211 1223344444444444444
Q ss_pred HHHhhc-cC-ChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 80 VFDEIY-EG-NVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 80 ~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
+-...- .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333331 23 445555666666666666666665555544
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.60 E-value=1.1 Score=38.84 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chhHhH
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHYSCL 385 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 385 (510)
...+......+...++...+...+...... ........+......+...++...+...+...... .++. ......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHH
Confidence 456667777888899999999888887752 23445556666677777788889999999888753 2322 223333
Q ss_pred Hh-HHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHc
Q 046354 386 AD-ILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPS-SSGAYVLSANVHAAR 459 (510)
Q Consensus 386 ~~-~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 459 (510)
.. .+...|+++.|...+.+.....| ....+......+...++.+.+...+.+..+..|. ....+..++..+...
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 33 78899999999999998864444 2233444444467789999999999999999998 688899999999999
Q ss_pred CCChHHHHHHHHHHH
Q 046354 460 GEWDEFAQVRKKMER 474 (510)
Q Consensus 460 g~~~~A~~~~~~~~~ 474 (510)
|+++.|...+.....
T Consensus 216 ~~~~~a~~~~~~~~~ 230 (291)
T COG0457 216 GKYEEALEYYEKALE 230 (291)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999997773
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.78 Score=34.88 Aligned_cols=139 Identities=15% Similarity=0.098 Sum_probs=81.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
.-.|..++..+++.+.... .+..-++.+|--....-+-+-..+.++.+-+ -.|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcCch----------hhcchHHH
Confidence 3467788888888887764 2444555555433333333444455555433 33332 34555555
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhhc
Q 046354 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVK 477 (510)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 477 (510)
..-+-.+- .+.......+.....+|.-++-.+++..+.+.+..+|.....++.+|.+.|+..++-+++.+.. +|++
T Consensus 76 i~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444433 3445556667788888999999999998876666677889999999999999999999999887 6654
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.38 E-value=0.3 Score=37.53 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHH
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTCTSILTS 249 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~ 249 (510)
|+..+..+++.+|+.+|++..|+++.+...+ -+++.+..++..++.=
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7888999999999999999999999999766 4677778888888773
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=1.3 Score=42.54 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=68.5
Q ss_pred HHHHhcCChhhHHHHHH--hhc-cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhh
Q 046354 66 DGYVKAGRVDEARKVFD--EIY-EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142 (510)
Q Consensus 66 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~ 142 (510)
....-.++++++.+..+ .+. .-...-.+.+++.+-+.|..+.|+++-+.-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------- 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------------------- 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------------------
Confidence 33344566666555443 111 11233466666666677777777666432211
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (510)
-.+...+.|+++.|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+
T Consensus 324 ------rFeLAl~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 324 ------RFELALQLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDRE 390 (443)
T ss_dssp ------HHHHHHHCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HH
T ss_pred ------HhHHHHhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHH
Confidence 122344566666666665554 3555777777777777777777777776654 445555666677766
Q ss_pred HHHHHHHHHHHC
Q 046354 223 AAMKLLNLMFQS 234 (510)
Q Consensus 223 ~A~~~~~~m~~~ 234 (510)
+-.++.+.....
T Consensus 391 ~L~kl~~~a~~~ 402 (443)
T PF04053_consen 391 KLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 655555555443
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=0.18 Score=48.22 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=86.4
Q ss_pred CCChHHHHHHHh--hcC-CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHh
Q 046354 7 TGKVKEATKLFD--EMS-QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 7 ~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
+|+++++.+... .+. .-+....+.+++-+-+.|.++.|+++-+.-. .-.....+.|+++.|.++.+.
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------HRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------HHHHHHHHCT-HHHHHHHCCC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------HHhHHHHhcCCHHHHHHHHHh
Confidence 456666544444 111 1224557777888888888888887744322 345666778888888887666
Q ss_pred hccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHH
Q 046354 84 IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
.. +...|..|.....+.|+++-|.+.|.+..+ |..|+- .|.-.|+.+...
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~l---------------------Ly~~~g~~~~L~ 393 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLL---------------------LYSSTGDREKLS 393 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHH---------------------HHHHCT-HHHHH
T ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHH---------------------HHHHhCCHHHHH
Confidence 54 556899999999999999999999988876 333333 344444444444
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046354 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202 (510)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 202 (510)
++.+..... .-++....++.-.|+.++..+++.+..+
T Consensus 394 kl~~~a~~~--~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 394 KLAKIAEER--GDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHHT--T-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHc--cCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 443332211 1133334445556777777777665543
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.27 E-value=0.023 Score=34.27 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=27.2
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
.++..+...|.+.|++++|+++++++.+..| |...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3556677788888888888888888876677 44454443
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=1.8 Score=38.16 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=23.2
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
...|++.+|..+|+...... +-+...-..++.++...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555554431 222233334444455555555555555444
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.21 E-value=0.18 Score=43.60 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=84.0
Q ss_pred hhHHHHhcccC--CCChhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC---------
Q 046354 294 NSARLAFERLE--AKDVVSWTAMILAYSN-----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG--------- 357 (510)
Q Consensus 294 ~~a~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------- 357 (510)
-..+..|.... +.+-.+|-.++..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666665 4677788888877764 3567777778899999999999999999998875533
Q ss_pred -------cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh-HHHHHHHhhCC
Q 046354 358 -------LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV-KEAMRVVSKMP 406 (510)
Q Consensus 358 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 406 (510)
+-+-++.++++|... |+.||.++-..|+.++.+.|.. .+..++.--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234588999999887 9999999999999999888763 33444443343
No 260
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.13 E-value=4.4 Score=41.26 Aligned_cols=437 Identities=9% Similarity=-0.082 Sum_probs=216.0
Q ss_pred cCCCChHHHHHHHhhcCCCChhhHHHHHHHHHh--cCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVSCASMITVFLR--NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
.+.|++..+.++-..+..+....|..-...... ...+++...++++-.........-...+..+.+.++++...+.+.
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 356677777777776653333333222222212 234555666555554432223333445566677888888887432
Q ss_pred hhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHH
Q 046354 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 161 (510)
.- ..+......+..+....|+.++|......+-.. ......++.++..+...|.....+ .+ .-+......|+...
T Consensus 124 ~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d--~w-~R~~~al~~~~~~l 199 (644)
T PRK11619 124 EK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA--YL-ERIRLAMKAGNTGL 199 (644)
T ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH--HH-HHHHHHHHCCCHHH
Confidence 32 345555667788888899988887777766444 456778999999999888776543 22 33555567888888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC-CCC
Q 046354 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY--ARNGPEGAAMKLLNLMFQSR-FMP 238 (510)
Q Consensus 162 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g-~~p 238 (510)
|..+...+.+........++..+. +...+..++.... ++...-..++.++ ....+.+.|..++....... ..+
T Consensus 200 A~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 200 VTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCH
Confidence 888888773222223334444333 3333443333332 2221111111122 23556788999988874433 333
Q ss_pred CHhhHH--HHHHHhhhhhhhhHHHHHHHHh-CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHH
Q 046354 239 NETTCT--SILTSCEGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWT 312 (510)
Q Consensus 239 ~~~~~~--~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 312 (510)
...... .+.................... ....+..+....+... ...++++.+...+..|.. . ...-.-
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~A-----l~~~dw~~~~~~i~~L~~~~~~~~rw~Y 350 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMA-----LGTGDRRGLNTWLARLPMEAKEKDEWRY 350 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHH-----HHccCHHHHHHHHHhcCHhhccCHhhHH
Confidence 222111 1110000000000000000000 0111223333333333 556677777777776654 1 111222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHH-HHHHHHHHHhhCCCCCcchhHhHHhHHhh
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG-RKTFNLMSRAYGFKPRAEHYSCLADILRR 391 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (510)
=+..++...|+.++|...|+.+.. . .+|-.++.+ .+.|..-.- ......-.. .+...+ -..-+..+..
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~~L~~ 419 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYPLKIDKAPKPDS--ALTQGP--EMARVRELMY 419 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCCCCCCCCCchhh--hhccCh--HHHHHHHHHH
Confidence 244555556777777777777632 1 123222211 111111000 000000000 000001 1122445567
Q ss_pred cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHHcCCChHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
.|....|...+..+... .+......+.......|....++.........+ -.-|..|......+.+.-..+.++
T Consensus 420 ~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 420 WNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 78888888887766633 444555555555567788888877776543211 122334555666666666666655
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=1.4 Score=34.80 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCCh
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV 105 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 105 (510)
....++..+.+.+.+.....+++.+...++ +....+.++..|++.+ .....+.++. ..+......+++.|.+.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 345667777777778888888887766533 4556777777777653 3333344332 23444445566666666666
Q ss_pred HHHHHHHHhccc
Q 046354 106 DEGRRLFDRMPL 117 (510)
Q Consensus 106 ~~A~~~~~~m~~ 117 (510)
+++.-++.++..
T Consensus 86 ~~~~~l~~k~~~ 97 (140)
T smart00299 86 EEAVELYKKDGN 97 (140)
T ss_pred HHHHHHHHhhcC
Confidence 666666665543
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.00 E-value=3.1 Score=38.92 Aligned_cols=150 Identities=10% Similarity=-0.029 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC--cch
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP---DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--AEH 381 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 381 (510)
...+|..++..+.+.|+++.|...+..+...+..+ ++.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44578888889999999999999999887743221 2233333344555678888998888888773 22221 111
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH------GDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
...+...... ..+.....-..-.....-..++..+...+... ++.+++...|+++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000000000000122333333333344 788999999999999999988888888877
Q ss_pred HHHc
Q 046354 456 HAAR 459 (510)
Q Consensus 456 ~~~~ 459 (510)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6553
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.00 E-value=0.55 Score=42.31 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCC----C-Cc------H
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPH----E-RD------H 412 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-p~------~ 412 (510)
++..++...+.++++++.|+...+-..-.. ...++..|...|.+..++++|.-+..+..+. . .| .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344556666677777777777655311111 2346677777777777777776555444321 1 11 1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIEL--QPSSS----GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...-.+..++...|....|.+..+++.++ ...+. .....++++|...|+.+.|..-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233445566777777777777776532 22222 225567777888888777777776554
No 264
>PRK15331 chaperone protein SicA; Provisional
Probab=94.96 E-value=0.43 Score=38.10 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=52.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+...|++++|..+|+-+...+ .-+..-+..|..++-..++++.|...|.....- . .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 445677777777777766543 223334444555555667777777777666543 2 2344444556667777777777
Q ss_pred HHHHHhhCC
Q 046354 398 AMRVVSKMP 406 (510)
Q Consensus 398 A~~~~~~~~ 406 (510)
|...|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 777776665
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.88 E-value=2 Score=35.99 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred ccChhhHHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH--hcCcCCcHHHHHH
Q 046354 290 QLDVNSARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS--DCSHAGLVEKGRK 364 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~ 364 (510)
.|-+..|+--|.+... |+ +..||-+.--+...|+++.|.+.|+...+.. |+ .-|..+=+ ++--.|++..|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHH
Confidence 3444444444444332 33 4578888888889999999999999988753 33 22333322 3345788988888
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHH-HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM-RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
-+-..-+.-...|-...|-.+. .+.-++.+|. .+.++.. ..|..-|...+..+.-..-. .+.+++++..-..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~ 227 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KSDKEQWGWNIVEFYLGKIS--EETLMERLKADAT 227 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhcc
Confidence 7766655312222222332222 2344566665 4455555 55556665555444322111 1224444443333
Q ss_pred CC-------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 444 SS-------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 444 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++ ..+|.-|+..+...|+.++|..+|+...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33 3458889999999999999999999877
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.72 E-value=1.6 Score=34.33 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
.....++..+...+.+..+..+++.+...+ ..+....+.++..|++.+ .......++. .++.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344567777777888999999999988876 466678888888887653 3444444442 1233333457778
Q ss_pred HhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH-GDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
|.+.+.++++..++.++. . ...+ +..+... ++++.|.+.+.+ +.++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~--~-~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG--N-FKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhc--C-HHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 888888888888888875 1 1222 3333333 788888888875 345667777766654
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.59 E-value=0.35 Score=47.03 Aligned_cols=143 Identities=22% Similarity=0.226 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-----chhHhHHhHHh----hcCChHHH
Q 046354 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHYSCLADILR----RAGQVKEA 398 (510)
Q Consensus 328 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~----~~g~~~~A 398 (510)
..+|+-+... +||. +..++....-.||-+.+++.+....+..++.-.. -.|...+..++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 4554 4556666777899999999998877642333222 22333333333 24568899
Q ss_pred HHHHhhCCCCCCcHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 399 MRVVSKMPPHERDHVVLGALLG-ACRLHGDVRMADYIGERLIELQPS----SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++++.+.+.-|+...|...-. .+...|+.++|++.|+++...... ..-.+..+++.+.-.++|++|...+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999977898887766554 456779999999999987732221 12237788999999999999999999998
Q ss_pred H
Q 046354 474 R 474 (510)
Q Consensus 474 ~ 474 (510)
+
T Consensus 333 ~ 333 (468)
T PF10300_consen 333 K 333 (468)
T ss_pred h
Confidence 3
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.59 E-value=0.55 Score=40.77 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHhhCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHh
Q 046354 194 SELFNLMP--QRNVWTWNAMIDRYAR-----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266 (510)
Q Consensus 194 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (510)
.+.|.... ++|-.+|-+.+..+.. .+..+=....++.|.+-|+.-|..+|+.+|....+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-------------- 119 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-------------- 119 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc--------------
Confidence 44555555 3677777777776654 34566666778889999999999999888875411
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
| ..+. ...+....-.|-++ -+=+++++++|...|+.||..+-
T Consensus 120 g----kfiP--------------------------------~nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e 161 (406)
T KOG3941|consen 120 G----KFIP--------------------------------QNVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIE 161 (406)
T ss_pred c----cccc--------------------------------HHHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHH
Confidence 0 0000 00111112222222 24478899999999999999999
Q ss_pred HHHHHhcCcCCcH
Q 046354 347 VGVLSDCSHAGLV 359 (510)
Q Consensus 347 ~~li~~~~~~g~~ 359 (510)
..|++++.+.+-.
T Consensus 162 ~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 162 DILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhcccccc
Confidence 9999999887753
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.5 Score=42.07 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=93.2
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHH----HHHHHhhCCHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGAL----LGACRLHGDVR 429 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l----~~~~~~~~~~~ 429 (510)
..|+..+|...|+++.+ ..|.|...+.---+++.-.|+.+.-...++++... .|+...|.-+ .-++...|-+.
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677788888999988 45667777777777888889988888888887755 6666554433 33456789999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|++..++.++++|.+.-+...++-++.-.|+.+++.+...+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999998888899999999999999998776443
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.94 E-value=0.13 Score=45.68 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=71.9
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCC-CcHHHHHHHHHHHHhhCC
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHE-RDHVVLGALLGACRLHGD 427 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~ 427 (510)
..-|.+.|.+++|+..|..... ..| ++.++..-..+|.+..++..|+.-......+. .-...|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999888774 355 88888888888999999888887776666332 123355555566566788
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 046354 428 VRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~ 448 (510)
..+|.+-++.++++.|++...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 899999999999999986443
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.87 E-value=2.2 Score=32.52 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMP---QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
.....+......|+-|+-.+++..+. ++++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34556777888899888888888875 378888888899999999999999999999888853
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.86 E-value=0.15 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777664
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.84 E-value=0.12 Score=29.37 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHH
Q 046354 415 LGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555555
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=17 Score=42.00 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=95.6
Q ss_pred HHHHHHHhcCChhhHHHHHHhc----cccCCChhHHHHHHHHHHhcCChhhHHHHHHh-hccCChhhHHHHHHHHHcCCC
Q 046354 30 SMITVFLRNHDLPKAEALFRAM----PESQRNIVAESAMIDGYVKAGRVDEARKVFDE-IYEGNVYSWTSLISGYFKARQ 104 (510)
Q Consensus 30 ~li~~~~~~~~~~~A~~~~~~~----~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 104 (510)
.+..+-.+.+.+.+|.-.+++- .+..-....|..+...|...+++|....+... ..+|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 5556667889999999999984 22222344555566699999999999888874 444433 233445667899
Q ss_pred hHHHHHHHHhccccCCC-hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHH-
Q 046354 105 VDEGRRLFDRMPLKLKN-VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNA- 179 (510)
Q Consensus 105 ~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~- 179 (510)
+..|...|+++.+..|+ ...++.++......+.++. +.-..+-.. .+....+++
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t---------------------~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLST---------------------EILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhH---------------------HHhhhcchhhccCHHHHHHHHH
Confidence 99999999999998554 6566655555444443332 222222222 122222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 046354 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 211 (510)
=+.+-.+.+++|....... ..+..+|...
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 2344477788888777766 4455555444
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.69 E-value=2.7 Score=37.99 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHh
Q 046354 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 300 (510)
+++.+.+++.|.+.|+.-+..+|-+...-....... ........|..+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~-------------------------------~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE-------------------------------DYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc-------------------------------cHHHHHHHHHHHH
Confidence 345567889999999998887776644432110000 1122456788888
Q ss_pred cccCC-------CChhhHHHHHHHHHhcCC----hhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCc--HHHHHHH
Q 046354 301 ERLEA-------KDVVSWTAMILAYSNHGH----GFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGL--VEKGRKT 365 (510)
Q Consensus 301 ~~~~~-------~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~ 365 (510)
+.|++ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 88887 233455555443 3333 356778888898888776554 33334433332222 4578889
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHH
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
++.+.+. |+++....|..+.-..
T Consensus 205 ~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 205 YNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHc-CCccccccccHHHHHH
Confidence 9999988 9999888877665433
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.67 E-value=0.48 Score=42.65 Aligned_cols=150 Identities=9% Similarity=-0.022 Sum_probs=90.3
Q ss_pred HhcCChhhHHHHHHhhccC------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhh
Q 046354 69 VKAGRVDEARKVFDEIYEG------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142 (510)
Q Consensus 69 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~ 142 (510)
...++.+.|+..+....+. -..+|..+..+..+.|.+++++..--.-.+. .....+- .--
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-------------a~~~~ds-~~~ 82 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-------------ARELEDS-DFL 82 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-------------HHHHHHH-HHH
Confidence 4567788888887776542 2346677777777777777665432211110 0000000 002
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC-----C---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCh
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP-----N---KDIVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNV 205 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~ 205 (510)
-..|..+.+++.+.-++.+++.+-..-. . .......++..++.-.+.++++++.|+...+ -..
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 2344555666666666666655544332 1 1123445567778888889999998887654 124
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.++-.|...|.+..|+++|+-+..+..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 678889999999999999987766553
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.57 E-value=2.9 Score=33.80 Aligned_cols=34 Identities=3% Similarity=-0.038 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHH
Q 046354 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 330 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 363 (510)
+++.+.+.|++|+...+..++..+.+.|.+....
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444555555555555555555555544433
No 278
>PRK09687 putative lyase; Provisional
Probab=93.51 E-value=5.4 Score=35.81 Aligned_cols=228 Identities=12% Similarity=-0.018 Sum_probs=120.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE----GAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
..+|..+....+.++...|..+-...+..-+..+|...-...+.++...|+. +++...+..+.. -.|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHH
Confidence 3577777777777777777644444444434456777666777777777763 356666666533 2233333333
Q ss_pred HHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc-cCCCChhhHHHHHHHHHhcCCh
Q 046354 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER-LEAKDVVSWTAMILAYSNHGHG 324 (510)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 324 (510)
.+.+++...... ......+...+.. +..++..+-...+.++.+.++
T Consensus 111 A~~aLG~~~~~~--------------------------------~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 111 AINATGHRCKKN--------------------------------PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred HHHHHhcccccc--------------------------------cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 333332211000 0001112222211 222344444455666666665
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC-cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
..+...+-.+.+ .+|...-...+.++...+ +.+.+...+..+.. .++..+-...+.++.+.|+......+.+
T Consensus 158 ~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~ 230 (280)
T PRK09687 158 EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIK 230 (280)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHH
Confidence 455565555554 234444444444554432 13345555555543 3566666777777777777443334444
Q ss_pred hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 404 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.+. .++ .....+.++...|+. +|...+..+.+.+|+
T Consensus 231 ~L~--~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 231 ELK--KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHc--CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 433 233 234566777777774 688888888776664
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.48 E-value=2.5 Score=33.72 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=55.8
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...++.+.+..++..+.- +.|..... ..-...+.+.|+|.+|..+|+++.+..|....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455677777777777753 34533222 22334456778888888888877755665555556666555443222222
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
...+++++..++ +.+ ..++..+....+...|.
T Consensus 98 ~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGAD-PDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCCC-hHH-HHHHHHHHHhccccchh
Confidence 333444444443 222 33334444444444433
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.44 E-value=0.11 Score=29.53 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=4.5 Score=38.59 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=39.1
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+..++-+.|+.++|++.++++.+..|. ..+...|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555666778888888888777644342 2356677777778888888887777764
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.40 E-value=7.2 Score=41.37 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=77.6
Q ss_pred CChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHH----hcCCcchhhHHHHH
Q 046354 72 GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA----HNGLIAKLEVISWT 147 (510)
Q Consensus 72 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~ 147 (510)
++++.|+.-+..+- ...|.-.++.--++|.+..|+.++. |+...+.....+|+ ....+++
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~------~~~e~~k~i~~~ya~hL~~~~~~~~------- 957 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK------PDSEKQKVIYEAYADHLREELMSDE------- 957 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec------cCHHHHHHHHHHHHHHHHHhccccH-------
Confidence 45566655554443 3344445555556677777766654 66666655554443 3333333
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhcCChHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT---WNAMIDRYARNGPEGAA 224 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A 224 (510)
.+-+|.+.|+.++|. .+|..+|+|.+|+.+..++..+-... -..|+.-+...+++-+|
T Consensus 958 -Aal~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 958 -AALMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred -HHHHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhH
Confidence 345566666666654 45667789999999888887643332 26677778888888888
Q ss_pred HHHHHHHH
Q 046354 225 MKLLNLMF 232 (510)
Q Consensus 225 ~~~~~~m~ 232 (510)
-++..+-.
T Consensus 1019 a~il~e~~ 1026 (1265)
T KOG1920|consen 1019 AKILLEYL 1026 (1265)
T ss_pred HHHHHHHh
Confidence 87777663
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=11 Score=38.58 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=37.8
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++..+....+.+.+..+.+..- +-++..|..++..+.+.+..+.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g--~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG--KEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC--ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 4556667777777777777766 3367788888888888887766666666655
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.29 E-value=0.74 Score=37.81 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=48.7
Q ss_pred hhcCChHHHHHHHhhCCCCCCc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 390 RRAGQVKEAMRVVSKMPPHERD------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
.+.|++++|..-|....+..|. ...|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 3456666666666555544332 2233334445556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|+.-|+++.
T Consensus 186 ealeDyKki~ 195 (271)
T KOG4234|consen 186 EALEDYKKIL 195 (271)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.28 E-value=0.5 Score=35.74 Aligned_cols=90 Identities=21% Similarity=0.109 Sum_probs=47.9
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CC-cHH---HHHHHHHHHHhhCC
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ER-DHV---VLGALLGACRLHGD 427 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~---~~~~l~~~~~~~~~ 427 (510)
.+..|+.+.|++.|.+.... .+-.+..||.-..++.-+|+.++|.+-+++..+. .| ... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34455666666666555531 2234555566666666666666666555555433 11 111 22222334566677
Q ss_pred HHHHHHHHHHHHhcCCC
Q 046354 428 VRMADYIGERLIELQPS 444 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~ 444 (510)
-+.|..-|+.+-++...
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777776655443
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=10 Score=38.27 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHhcCChhhHHHHHHhhccC-----ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCc
Q 046354 64 MIDGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138 (510)
Q Consensus 64 li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~ 138 (510)
-++.+.+.+.+++|++..+..... -......+|..+...|++++|-...-.|.. .+..-|...+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 345555666666666666555331 123455566666666666666666666655 4555555555555444444
Q ss_pred c
Q 046354 139 A 139 (510)
Q Consensus 139 ~ 139 (510)
.
T Consensus 440 ~ 440 (846)
T KOG2066|consen 440 T 440 (846)
T ss_pred c
Confidence 3
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.22 E-value=5.2 Score=37.44 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=49.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQR-------NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....+|..++..+.+.|+++.|...+..+... .+...-.-+..+-..|+..+|...+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888889999999999999888887751 3455556677788889999999988888763
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.19 E-value=0.63 Score=41.08 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...|+++.+...+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3344444444555555555555555555554455555555555555555555555444
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.92 E-value=0.78 Score=36.49 Aligned_cols=83 Identities=22% Similarity=0.096 Sum_probs=54.1
Q ss_pred chhHhHHhHH---hhcCChHHHHHHHhhCCCCCCcHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 380 EHYSCLADIL---RRAGQVKEAMRVVSKMPPHERDHVVLGAL-LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 380 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+.+.|++.+ .+.++.+++..++..+.-..|.......+ ..-+...|++.+|.++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555544 45678888888887776566755543333 3345677888888888888777777766556666666
Q ss_pred HHHcCCC
Q 046354 456 HAARGEW 462 (510)
Q Consensus 456 ~~~~g~~ 462 (510)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 6666653
No 290
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.53 Score=39.84 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=58.4
Q ss_pred cCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
..+++.|+..+.+.....|+.. -|..=+..+.+.++++.+..--.+++++.|+.......++........+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3456666666666665667553 445556666677778888877788888888877777778888777888888888777
Q ss_pred HHH
Q 046354 471 KME 473 (510)
Q Consensus 471 ~~~ 473 (510)
+..
T Consensus 103 ra~ 105 (284)
T KOG4642|consen 103 RAY 105 (284)
T ss_pred HHH
Confidence 774
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.46 E-value=7.2 Score=35.30 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcC--cCC----cHHHHHHHHHHHHHhhCCCC--CcchhHhHHhHHhhcCCh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCS--HAG----LVEKGRKTFNLMSRAYGFKP--RAEHYSCLADILRRAGQV 395 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 395 (510)
+++.+.+++.|++.|++-+..+|.+...... ... ....|..+++.|++.+.+-- +...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 4456678899999999988877766333222 222 34578999999998754432 23333333322 33333
Q ss_pred ----HHHHHHHhhCCCC---CCcH-HHHHHHHHHHHhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh-H
Q 046354 396 ----KEAMRVVSKMPPH---ERDH-VVLGALLGACRLHGD--VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD-E 464 (510)
Q Consensus 396 ----~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~ 464 (510)
+.++.+|+.+.+. +.|. .....++..+-...+ ..++..+++.+.+.+-.--..+....-+++-.+..+ +
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 4455566655542 2233 333333333322222 457778888777554332223333334444444444 7
Q ss_pred HHHHHHHHHHhhccccceeE
Q 046354 465 FAQVRKKMERRVKKVASFSQ 484 (510)
Q Consensus 465 A~~~~~~~~~~~~~~p~~~~ 484 (510)
...-+..+.......|++.|
T Consensus 236 ~~~~i~ev~~~L~~~k~~~~ 255 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHHHHhhCcccCh
Confidence 77777777766667776654
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.20 E-value=0.39 Score=26.33 Aligned_cols=27 Identities=30% Similarity=0.171 Sum_probs=15.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455556666666666666655554
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.20 E-value=1.9 Score=34.61 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH-----HhHHhh
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL-----ADILRR 391 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 391 (510)
+++.++.++|+.-|..+.+.|...=+. .-..........|+...|...|+++-.. .|.|....-+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 567788999999999999877532221 1111223456889999999999999865 3444433222 234567
Q ss_pred cCChHHHHHHHhhCCCC-CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 392 AGQVKEAMRVVSKMPPH-ER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
.|.++....-++.+... +| ....-..|.-+-.+.|++..|.+.|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88899888888776533 34 344556777777889999999999998874
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.12 E-value=0.96 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=36.8
Q ss_pred hcCChHHHHHHHhhCCCCCCcHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 391 RAGQVKEAMRVVSKMPPHERDHVVLGAL-LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
..++++++..++..+.-..|+......+ ..-+...|++.+|.+++++..+..+..+..-..++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3566666666666655444533322222 2234556666677666666655544444334444444444444
No 295
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.99 E-value=8.4 Score=34.16 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 187 (510)
-.+++..+....|...++..-.-.+.+.+.....++.....+...+.+.|++..|+.-|-....++...+..++..+...
T Consensus 55 l~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 55 LIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 33444444443455555554444455667777778888888888888888888888877766555555554455555555
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 188 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
|...++ +...-.+++ -|...++...|...+....+
T Consensus 135 ~~~~e~----------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 135 GYPSEA----------DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp TSS--H----------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cCCcch----------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 544433 222222333 35567778888877766644
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.69 E-value=9.7 Score=34.25 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=59.0
Q ss_pred HcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcC-chHHHHHHHhhCC------
Q 046354 100 FKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNA-MTKLAREYFVQMP------ 170 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~------ 170 (510)
.+.|+++.|..++.+.... ..++.....+.+.| |+.-.. ....+ +++.|..++++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-------------yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-------------YNIGKS-LLSKKDKYEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-------------HHHHHH-HHHcCCChHHHHHHHHHHHHHHHhh
Confidence 4678888888888887664 12222222222222 222222 23333 5555555444322
Q ss_pred ------CCCh-----hHHHHHHHHHHhcCCHH---HHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 171 ------NKDI-----VAWNAMITAYVDAGNMA---QASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 171 ------~~~~-----~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.++. .+...++.+|...+..+ +|.++++.+.. |+ +.++-.-+..+.+.++.+.+.+.+..|..
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 1222 24455556666655533 34444444433 33 33444445555556666666666666654
Q ss_pred C
Q 046354 234 S 234 (510)
Q Consensus 234 ~ 234 (510)
.
T Consensus 150 ~ 150 (278)
T PF08631_consen 150 S 150 (278)
T ss_pred h
Confidence 3
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.69 E-value=0.11 Score=29.08 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 408 HER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 408 ~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
..| +...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344 4556666666666666666654
No 298
>PRK10941 hypothetical protein; Provisional
Probab=91.61 E-value=1.3 Score=39.18 Aligned_cols=69 Identities=12% Similarity=-0.031 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++......+..|..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 346666778889999999999999999999998888888899999999999999888777666665543
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.44 E-value=2.8 Score=34.64 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-Cc------c
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RA------E 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~------~ 380 (510)
.+..+...|++.|+.++|++.|.++.+....|... .+-.+|+.....+++..+.....++... --.+ +. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHHH
Confidence 57778888999999999999999988865444433 4566777777888888888888777654 1121 11 1
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
+|..+ .+...|++..|.+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2345678888887776554
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.41 E-value=0.3 Score=27.13 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCCC
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQRN 57 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~ 57 (510)
.+|..+...+...|++++|+..|++..+..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777665554
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.38 E-value=0.68 Score=41.37 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 316 LAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
.-|.++|++++|+..|..-... .| |.+++..-..+|.+...+..|..-....... . ..-...|+.-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHhh
Confidence 4578888899999988877663 45 8888888888888888887776655554432 0 0012222222223333566
Q ss_pred hHHHHHHHhhCCCCCCcHH
Q 046354 395 VKEAMRVVSKMPPHERDHV 413 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~ 413 (510)
..+|.+-++...++.|+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 7777777777776777643
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=8.7 Score=32.77 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCchh
Q 046354 426 GDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.|.-.+...+++..+++|.-..+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 55566666666666666654433
No 303
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=18 Score=36.46 Aligned_cols=322 Identities=10% Similarity=0.027 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccccCCC---hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh
Q 046354 92 WTSLISGYFKARQVDEGRRLFDRMPLKLKN---VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168 (510)
Q Consensus 92 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~ 168 (510)
-..+|.-+...+.+..|+++-+.+.. |. ...+.....-+.+..+. .+.+.+..+-++
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~------------------~d~~vld~I~~k 499 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDK------------------MDEEVLDKIDEK 499 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCc------------------cchHHHHHHHHH
Confidence 44567777888888888888888876 44 33333333333333221 122333333344
Q ss_pred CCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046354 169 MPN--KDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238 (510)
Q Consensus 169 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 238 (510)
+.. ....+|..+...-...|+.+-|..+++.=+. -+..-+...+.-+...|+.+-...++-.+.++ -
T Consensus 500 ls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~ 576 (829)
T KOG2280|consen 500 LSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---L 576 (829)
T ss_pred hcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---H
Confidence 433 4456788888888889999999998876554 13334566677777788888877777666542 1
Q ss_pred CHhhHHHHHHHhhhhhhhhHHHHHHHH-hCCCcchhhhhhhhhhccccccccccChhhHHHHh--cccC-----CCChhh
Q 046354 239 NETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF--ERLE-----AKDVVS 310 (510)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~--~~~~-----~~~~~~ 310 (510)
+...+...+.. ......++....+ .+-..- -.. ...++...+...| +... .+-...
T Consensus 577 ~~s~l~~~l~~---~p~a~~lY~~~~r~~~~~~l-------~d~------y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 577 NRSSLFMTLRN---QPLALSLYRQFMRHQDRATL-------YDF------YNQDDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred HHHHHHHHHHh---chhhhHHHHHHHHhhchhhh-------hhh------hhcccchhhhhhhhhhhhhhhhhhcccchh
Confidence 11222222210 0111111111111 000000 000 1111111111111 1100 011112
Q ss_pred HHHHHHHHHhcCChh----------hHHHHHHHHHH-cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 311 WTAMILAYSNHGHGF----------QVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~----------~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
.......+.+..... +-+++.+.+.. .|..-...+.+--+.-+...|+-.+|.++-.+.+ -||.
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdK 715 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDK 715 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----Ccch
Confidence 223334444433211 11122222221 2333444455555556666677777766554442 4666
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
..|..-+.++...++|++-+++-+... . +.-|.-+..+|.+.|+..+|.+.+.+.- +. .....+|.+.
T Consensus 716 r~~wLk~~aLa~~~kweeLekfAkskk--s--PIGy~PFVe~c~~~~n~~EA~KYiprv~----~l----~ekv~ay~~~ 783 (829)
T KOG2280|consen 716 RLWWLKLTALADIKKWEELEKFAKSKK--S--PIGYLPFVEACLKQGNKDEAKKYIPRVG----GL----QEKVKAYLRV 783 (829)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHhccC--C--CCCchhHHHHHHhcccHHHHhhhhhccC----Ch----HHHHHHHHHh
Confidence 777767777777777777777666655 2 3445556677777777777777766531 11 1566677777
Q ss_pred CCChHHHHHH
Q 046354 460 GEWDEFAQVR 469 (510)
Q Consensus 460 g~~~~A~~~~ 469 (510)
|++.+|..+-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 7777776653
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.85 E-value=0.64 Score=38.72 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=77.2
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 430 (510)
|-..|-...|.--|.... .+.|+ +.+||.|.--+...|+++.|.+.|+...+.+|. ..+...-.-++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 566777777777777666 45665 677888888888999999999999999877773 3343333334455689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHH--cCCChHHHHHHH
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAA--RGEWDEFAQVRK 470 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 470 (510)
|.+-+.+--.-+|++| |. ..+.|.. .-+..+|..-+.
T Consensus 152 Aq~d~~~fYQ~D~~DP--fR-~LWLYl~E~k~dP~~A~tnL~ 190 (297)
T COG4785 152 AQDDLLAFYQDDPNDP--FR-SLWLYLNEQKLDPKQAKTNLK 190 (297)
T ss_pred hHHHHHHHHhcCCCCh--HH-HHHHHHHHhhCCHHHHHHHHH
Confidence 9998888888888876 22 2344443 334555654443
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.52 E-value=0.35 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777888887777765
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=7.7 Score=33.08 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=72.0
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH----HcCCCCCc-hhHHHHHHhcCcCCcHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML----KSGTKPDE-ITFVGVLSDCSHAGLVEKG 362 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~~~~~li~~~~~~g~~~~a 362 (510)
+-.+.+++|-++|.+... +|--..++..|-..|.+.- +.|-+-|. .+|.....+| +.+++++|
T Consensus 25 gg~~k~eeAadl~~~Aan-----------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAAN-----------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred CCCcchHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence 445678888888765532 2222222232222222221 12222222 2343333333 33466666
Q ss_pred HHHHHHHHHhh----CCCCCcchhHhHHhHHhhc-CChHHHHHHHhhCCCC----CCcH---HHHHHHHHHHHhhCCHHH
Q 046354 363 RKTFNLMSRAY----GFKPRAEHYSCLADILRRA-GQVKEAMRVVSKMPPH----ERDH---VVLGALLGACRLHGDVRM 430 (510)
Q Consensus 363 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~p~~---~~~~~l~~~~~~~~~~~~ 430 (510)
.+.++...+-+ .+..-....-.+.+.|... .+++.|+..|+..-+. ..+. .++.-....-...+++.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 65555444321 1111122223455555443 5666666666554321 1222 233333333456799999
Q ss_pred HHHHHHHHHhcCCCCchh
Q 046354 431 ADYIGERLIELQPSSSGA 448 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~ 448 (510)
|+.+|+++....-+++-.
T Consensus 173 Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHhccchHH
Confidence 999999998666665443
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.41 E-value=23 Score=36.22 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHhhcC----CCCh-----hhHHHHHHHHHhcCChhhHHHHHHhccccC---C-Ch--hHHHHH-HHHHH
Q 046354 6 CTGKVKEATKLFDEMS----QPDP-----VSCASMITVFLRNHDLPKAEALFRAMPESQ---R-NI--VAESAM-IDGYV 69 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p-~~--~~~~~l-i~~~~ 69 (510)
...+++.|+..+++.. +++. .....++..+.+.+... |...+++..+.- + .. ..+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4567888888888774 2222 12334566666666555 888888866541 1 11 222222 23333
Q ss_pred hcCChhhHHHHHHhhcc-------CChhhHHHHHHHHH--cCCChHHHHHHHHhc
Q 046354 70 KAGRVDEARKVFDEIYE-------GNVYSWTSLISGYF--KARQVDEGRRLFDRM 115 (510)
Q Consensus 70 ~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 115 (510)
..+++..|.+.++.+.. +...++-.++.+.. +.+..+.+.+.++++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 34789989998888833 22233444444433 455566666666655
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.40 E-value=1.8 Score=38.30 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHHHhcccc-------CCChhhHHHHH
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-------LKNVVSWTTVV 129 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~ll 129 (510)
++..++..+...|+.+.+.+.++.+.+. +...|..+|.+|.+.|+...|++.|+++.+. .|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445666666666666666666666442 3455666666666666666666666666552 44444444444
Q ss_pred HH
Q 046354 130 LG 131 (510)
Q Consensus 130 ~~ 131 (510)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.19 E-value=0.022 Score=45.35 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHhcCChhhHHHHHHhccccC--CChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
++.+.+.+.+.....+++.+.... .+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 444444555555555555554322 234445555555555555555555444
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.18 E-value=7.7 Score=30.50 Aligned_cols=95 Identities=9% Similarity=-0.022 Sum_probs=55.3
Q ss_pred HhcCchHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhcCChHHHHH-HH
Q 046354 154 ERNAMTKLAREYFVQMP--NKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRN-VWTWNAMIDRYARNGPEGAAMK-LL 228 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~-~~ 228 (510)
...++++.+..+++.+. .|+ ...-..-...+...|++++|.++|+++.+.. ...|..-+.++|-.-.-|-..+ .-
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHH
Confidence 44778888888887776 333 3333334556789999999999999998733 3344444444443322222222 23
Q ss_pred HHHHHCCCCCCHhhHHHHHH
Q 046354 229 NLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~ 248 (510)
.++...|-.|+.......+.
T Consensus 101 ~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 101 DEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHhCCCHhHHHHHHHHh
Confidence 34455556666555444443
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.11 E-value=0.47 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCCC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQRN 57 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~ 57 (510)
.|..+...+.+.|++++|++.|++..+..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666677777777777777776665553
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=8.9 Score=31.02 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-..|+-+-.+.|++.+|.+.|+.+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3344444445555555555555443
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.02 E-value=1.6 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
-.+..++.+.|++++|.+..+.+++.+|++..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3466778999999999999999999999997553
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.96 E-value=10 Score=31.44 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=58.5
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh-----HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 424 (510)
...+...|+++.|..-++..... |....+ -.|.+.....|.+++|...++...+..-.......-...+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34566778888888877766542 222222 235556677888888888887776222133334444566777
Q ss_pred hCCHHHHHHHHHHHHhcCCCC
Q 046354 425 HGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.|+-++|...|++.++..+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 888888888888888666443
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.81 E-value=0.85 Score=36.95 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC----CChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARG----EWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~ 473 (510)
+++|+.-|++++.++|+...++..++++|...| +..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 455666666666777777777777777766544 3334445554444
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.78 E-value=0.82 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+++.|...|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555554
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.55 E-value=0.51 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
++..++.++.+.|++++|.+.|+++....|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467789999999999999999998875443
No 318
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.38 E-value=27 Score=35.61 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=20.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 213 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
..+.-.|+++.|.+.+-. ..+...+.+.+...+..+
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~ 301 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY 301 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence 344557788888777766 334566666776666644
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.25 E-value=15 Score=32.52 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+++.....|..+|.+.+|.++-++++.++|-+...+..|...|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567789999999999999999999999999999999999999999999999998873
No 320
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.23 E-value=0.22 Score=46.53 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=69.0
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCC
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGD 427 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 427 (510)
+..+...++++.|..++.++.+ +.|+-..| ..=..++.+.+++..|..=..+.++..|. ...|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4445667788888888888875 36644433 33346778888888888877777766663 3355555667777788
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
+.+|...|+......|+++..-..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHH
Confidence 888888888888888887654433
No 321
>PRK09687 putative lyase; Provisional
Probab=89.15 E-value=16 Score=32.79 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=38.6
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcC-CHHHHHHH-HhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG-NMAQASEL-FNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
..+.++.+.++.+....+...+..+|..+-...+.++.+.+ +...+... ...+..+|..+-...+.++.+.|+ ..|.
T Consensus 147 ~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av 225 (280)
T PRK09687 147 AVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVL 225 (280)
T ss_pred HHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHH
Confidence 33444444444333333333333455555444455554432 12233333 333334566666666666666665 3444
Q ss_pred HHHHHHHH
Q 046354 226 KLLNLMFQ 233 (510)
Q Consensus 226 ~~~~~m~~ 233 (510)
..+-+..+
T Consensus 226 ~~Li~~L~ 233 (280)
T PRK09687 226 SVLIKELK 233 (280)
T ss_pred HHHHHHHc
Confidence 44444444
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.03 E-value=1.6 Score=31.13 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.=++.+-++.+....+-|++....+.+++|.+.+|+..|.++++..+.+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335566667777777888888888888888888888888888888775422 23445555543
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.94 E-value=6.5 Score=32.46 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhccCC------hhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYEGN------VYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+..+...|++.|+.+.|.+.+.++.+.. ...+-.+|+.....+++..+...+.+....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566677777777777777777775432 234666777777777777777777666554
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=31 Score=35.52 Aligned_cols=164 Identities=8% Similarity=0.006 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhccCCh---hhHHHHHHHHHcCCChHHHHHHHHhcccc---------CCChhh---H
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNV---YSWTSLISGYFKARQVDEGRRLFDRMPLK---------LKNVVS---W 125 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~---~ 125 (510)
...-+..+.+...++.|..+.+.-.-+.. .........+-+.|++++|...|-+-... -+|... .
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHH
Confidence 34455666666777777766655422111 12223334455677777777776655443 223222 2
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046354 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRN 204 (510)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 204 (510)
...+..+.+.| .|+...-..|+.+|.+.++.+...++.+....... .-....+..+.+.+-.++|..+-..... +
T Consensus 417 t~YLe~L~~~g---la~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 417 TSYLEALHKKG---LANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHcc---cccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 23333333333 33455666778888888888887777776541111 1234455666666767777666555543 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
......+ +-..+++++|++++..+
T Consensus 493 e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 493 EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 3333333 34567888888888776
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.54 E-value=13 Score=30.99 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=52.9
Q ss_pred hHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHcCC
Q 046354 387 DILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS----SSGAYVLSANVHAARGE 461 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~ 461 (510)
..+.+.|+ +.|.+.|-.+... ..+....-..+..|....|.+++..++-+++++.+. ++..+..|+.++.+.|+
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44566666 4555555554422 223333333444444567899999999999966543 46779999999999999
Q ss_pred ChHHH
Q 046354 462 WDEFA 466 (510)
Q Consensus 462 ~~~A~ 466 (510)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.47 E-value=1.1 Score=23.78 Aligned_cols=30 Identities=33% Similarity=0.215 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
|..+...+...|+++.|...+++.++..|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666665555443
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.35 E-value=34 Score=35.48 Aligned_cols=225 Identities=16% Similarity=0.038 Sum_probs=117.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
.....++++|..+..++...=..|+..--..+......+.. .+. ...|+++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a----------------------~va-------l~~~~~e 475 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRA----------------------QVA-------LNRGDPE 475 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHH----------------------HHH-------HhcCCHH
Confidence 45578899999988887654333333222222221111100 000 4456777
Q ss_pred hHHHHhcccCC--------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH---HH--HhcCcCCcHH-
Q 046354 295 SARLAFERLEA--------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG---VL--SDCSHAGLVE- 360 (510)
Q Consensus 295 ~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li--~~~~~~g~~~- 360 (510)
.|.++-+...+ ..+..+..+..+..-.|++++|..+.++..+.--.-+...+.. +. ..+...|...
T Consensus 476 ~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 476 EAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred HHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 76665554433 3556788888888899999999999887766422333333322 22 1234556332
Q ss_pred -HHHHHHHHHHHhhCCCCC-----cchhHhHHhHHhhcCChHHHHHHHhhC----CCCCCcHH----HHHHHHHHHHhhC
Q 046354 361 -KGRKTFNLMSRAYGFKPR-----AEHYSCLADILRRAGQVKEAMRVVSKM----PPHERDHV----VLGALLGACRLHG 426 (510)
Q Consensus 361 -~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~p~~~----~~~~l~~~~~~~~ 426 (510)
.....+......+..... ..++..+..++.+ ++.+..-.... ....|... .+..|+......|
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 233333333332111111 2233444444444 44443332222 22233222 2235667778889
Q ss_pred CHHHHHHHHHHHHhcCCCC--chhHHHHH-----HHHHHcCCChHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSS--SGAYVLSA-----NVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~--~~~~~~l~-----~~~~~~g~~~~A~~~~~~ 471 (510)
+.++|.....++..+..++ ...|...+ ......|+.+.|.....+
T Consensus 633 dl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999988443332 22222222 224557888777766654
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.66 E-value=14 Score=30.06 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
.+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-...
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677888889988888887764322 222233455555555665554444444443
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=2.3 Score=37.70 Aligned_cols=97 Identities=9% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-C------C--hhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-K------D--VVSWTAMILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
|.+.+......++... ....++++++..+-++.. + + ..+|-.++ -.-++++++.++..=++.
T Consensus 59 g~~~s~~~Vd~~V~v~-----~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVI-----SSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQY 129 (418)
T ss_pred CCCcceeehhhhhhcc-----ccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchh
Confidence 3344444444444444 567788888887777664 2 1 22333332 234678999999999999
Q ss_pred CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 338 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|+-||.++++.+++.+.+.+++.+|.++.-.+...
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776654
No 330
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.32 E-value=0.42 Score=42.73 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=62.7
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~ 432 (510)
...|.++.|++.|...+.. -++....|..-..++.+.++...|++-+....++.||.. .|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3456666666666665542 233444455555566666666666666666655555433 3322233334456666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+..+.+++-+. ..-..+-.+.-..+..++-...+++.+
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 6666666554432 333444445555555555555555554
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=3.9 Score=39.80 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc
Q 046354 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86 (510)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 86 (510)
+|+++.|-.++..+++ ..-+.++..+-++|..++|+++- +|+. .-.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d---~rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPD---QRFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChh---hhhhhhhhcCcHHHHHHHHHhh--
Confidence 3444445444444332 23344555566667666666542 2221 1233445678888887765543
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHH
Q 046354 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166 (510)
Q Consensus 87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~ 166 (510)
.+..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+. ...+.....+.|.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~-----l~~la~~~~~~g~-------- 723 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEG-----LAVLASLAKKQGK-------- 723 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhH-----HHHHHHHHHhhcc--------
Confidence 3456688999999999999999999988765 3444444444443321 2222222222222
Q ss_pred hhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046354 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202 (510)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 202 (510)
.|.--.+|...|+++++.+++..-.+
T Consensus 724 ----------~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 724 ----------NNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred ----------cchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 12233467788999999998877654
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.81 E-value=1.7 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556666666677888888888888888888888888888888877523 33336666654
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.73 E-value=34 Score=33.69 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=95.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHH
Q 046354 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRN---VWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSIL 247 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll 247 (510)
+..+|...+..-...|+.+.+.-+|+...-|- ...|--.+.-....|+.+-|..++....+-- -.|..+.+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566666777777777777777777766532 2334444444444566666666655544322 223333333333
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChh-hHHHHHHHHHhcCCh
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVV-SWTAMILAYSNHGHG 324 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 324 (510)
. -..|+++.|..+++.+.+ |+.. .-..-+....+.|+.
T Consensus 376 ~---------------------------------------e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 376 E---------------------------------------ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred H---------------------------------------HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 3 335677777777777765 3322 222223445566776
Q ss_pred hhHH---HHHHHHHHcCCCCCchhHHHHHHh-----cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 325 FQVF---RLFARMLKSGTKPDEITFVGVLSD-----CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 325 ~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
+.+. .++..... | +-+..+...+.-- +.-.++.+.|..++..+.+ ..+++...|..+++...-.+
T Consensus 417 ~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 417 EDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 6666 33322222 1 1222222222211 2234677788888888776 46667777777777665544
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.65 E-value=9.5 Score=36.18 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=70.2
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
..|+.-.|-+-+....+. .+.++.........+...|+++.+...+...... .....+..+++....+.|++..|..
T Consensus 301 ~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 446665555544444442 2334444444445556677777777776655432 4455566677777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+-|+..+-.++......+-.-...|-++++...++++.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 7777775555555554444444555667777777777665
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.44 E-value=10 Score=27.40 Aligned_cols=57 Identities=28% Similarity=0.244 Sum_probs=39.1
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 50 mNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67788888888888887788877776644 34566666666677777766 45544443
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.72 E-value=19 Score=29.86 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=64.4
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-CCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHhcCC
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWN-----AMITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGP 220 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~ 220 (510)
+...+...++++.|...++... .+....+. .|.+.....|.+|+|+..++....++ ......-.+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 4556667777777777777655 33333333 34567888999999999999988764 3335556678999999
Q ss_pred hHHHHHHHHHHHHCC
Q 046354 221 EGAAMKLLNLMFQSR 235 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g 235 (510)
-++|..-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999998876
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.63 E-value=24 Score=30.88 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=132.6
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---------C
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---------N 171 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~ 171 (510)
+..++++|+.-|++..+..+...-|. --+...++....+.+++++..+.+.++. .
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----------------FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----------------FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44577888888887776533322221 1123345556666677776666666654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChh----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVW----TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
-+..+.|++++.-....+.+-...+|+.-.+ .|.. |-..|...|...+.+.+..++++++.++.
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC------- 175 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC------- 175 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh-------
Confidence 2344556666555555554444444432211 1221 22345556666666666666666664421
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcC
Q 046354 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322 (510)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (510)
+..+-++-. ++- ..-...|..-|+.|..+.
T Consensus 176 ----------------------------------------------q~edGedD~---kKG-tQLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 176 ----------------------------------------------QTEDGEDDQ---KKG-TQLLEIYALEIQMYTEQK 205 (440)
T ss_pred ----------------------------------------------ccccCchhh---hcc-chhhhhHhhHhhhhhhhc
Confidence 111000000 000 001235666678888887
Q ss_pred ChhhHHHHHHHHHHc-CCCCCchhHHHHHHhc-----CcCCcHHHHHHHHHHHHHhhCCCCCc--c---hhHhHHhHHhh
Q 046354 323 HGFQVFRLFARMLKS-GTKPDEITFVGVLSDC-----SHAGLVEKGRKTFNLMSRAYGFKPRA--E---HYSCLADILRR 391 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~ 391 (510)
+-.+...+|++...- .--|.+... .+|+-| .+.|.+++|..-|-++.+.+.-..++ . -|..|+.++.+
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Confidence 777777778776542 223444433 445554 36788888776555544433222222 2 24455666666
Q ss_pred cCC--hHHHHHHHhhCC--CCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 392 AGQ--VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 392 ~g~--~~~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|- ++. ++.. +..|...+...++.+|.. ++..+-++++..-.
T Consensus 285 S~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 285 SGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNR 330 (440)
T ss_pred cCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh
Confidence 552 111 1111 125667788888888865 45555555554433
No 338
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.62 E-value=27 Score=31.44 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 309 VSWTAMILAYSNHGHGF---QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
.+...++.+|...+..+ +|..+++.+... .+-.+..+..-+..+.+.++.+.+.+.+.+|... +......+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 35677888888877655 455666666543 2222345555566677789999999999999985 33233444444
Q ss_pred HhHH---hhcCChHHHHHHHhhCCCC--CCcHH-HHHHHH----HHHHhhCC------HHHHHHHHHHHHh--cCCCCch
Q 046354 386 ADIL---RRAGQVKEAMRVVSKMPPH--ERDHV-VLGALL----GACRLHGD------VRMADYIGERLIE--LQPSSSG 447 (510)
Q Consensus 386 ~~~~---~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~----~~~~~~~~------~~~A~~~~~~~~~--~~p~~~~ 447 (510)
+..+ ... ....|...+..+... .|... ....++ ......++ .+....+++...+ ..|-++.
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4444 332 234444444433211 33222 111111 11112122 4444444553321 1222222
Q ss_pred h---HHH----HHHHHHHcCCChHHHHHHHHHH
Q 046354 448 A---YVL----SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~---~~~----l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+ ... -+..+.+.++|++|...|+...
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 2344788999999999998543
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.38 E-value=47 Score=34.00 Aligned_cols=170 Identities=13% Similarity=0.134 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhc-------cCChhhHHHHHHHHH-cCCChHHHHHHHHhcccc--CCChhhH
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIY-------EGNVYSWTSLISGYF-KARQVDEGRRLFDRMPLK--LKNVVSW 125 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~~~~~~ 125 (510)
.+...|..||.. |.+.++-+. +.+..++-.+...+. ...+++.|+..+++.... .++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~-- 96 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT-- 96 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH--
Confidence 355667777664 333444443 124456667777776 567888888888876543 11111
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----C----CChhHHHHH-HHHHHhcCCHHHHHHH
Q 046354 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----N----KDIVAWNAM-ITAYVDAGNMAQASEL 196 (510)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~----~~~~~~~~l-i~~~~~~g~~~~A~~~ 196 (510)
+.--..-..++..+.+.+... |...+++.. . +-...+..+ +..+...++...|.+.
T Consensus 97 --------------d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~ 161 (608)
T PF10345_consen 97 --------------DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALEN 161 (608)
T ss_pred --------------HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111223344454444444 555555544 1 111122222 2222233788888888
Q ss_pred HhhCCC-------CChhhHHHHHHHH--HhcCChHHHHHHHHHHHHCCC---------CCCHhhHHHHHHHhh
Q 046354 197 FNLMPQ-------RNVWTWNAMIDRY--ARNGPEGAAMKLLNLMFQSRF---------MPNETTCTSILTSCE 251 (510)
Q Consensus 197 ~~~~~~-------~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~ 251 (510)
++.+.. +-..++..++.+. .+.+..+++.+.++.+..... .|...++..++.-+.
T Consensus 162 L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~ 234 (608)
T PF10345_consen 162 LQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCC 234 (608)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH
Confidence 776653 2233333343333 334556667766666633221 234455555555443
No 340
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=36 Score=32.64 Aligned_cols=418 Identities=11% Similarity=0.042 Sum_probs=210.2
Q ss_pred HHHHHhcC--ChhhHHHHHHhccccCCCh----hHHHHHHHH-HHhcCChhhHHHHHHhhcc-----CC-----hhhHHH
Q 046354 32 ITVFLRNH--DLPKAEALFRAMPESQRNI----VAESAMIDG-YVKAGRVDEARKVFDEIYE-----GN-----VYSWTS 94 (510)
Q Consensus 32 i~~~~~~~--~~~~A~~~~~~~~~~~p~~----~~~~~li~~-~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~ 94 (510)
.+.+..+| +...++++++....-.|.. .+--.|... +.-..+++.|+.-++.... |+ ..++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 34444455 5556777777666544421 111122222 2234567777776666511 22 246777
Q ss_pred HHHHHHcCC-ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CC
Q 046354 95 LISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NK 172 (510)
Q Consensus 95 li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~ 172 (510)
|...|.... .+..|..++.+..+...+...|..-+ ...+++...-..++..|.+++.-.. ..
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckl----------------lfQLaql~~idkD~~sA~elLavga~sA 157 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKL----------------LFQLAQLHIIDKDFPSALELLAVGAESA 157 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHH----------------HHHHHHHHhhhccchhHHHHHhcccccc
Confidence 777777665 77888888888777533333443211 2234555555667777777765544 12
Q ss_pred C--hhHHHHHHHHH------Hh---cCCHHHHHHHHhhCCC---CChh------hH--HHHHHHHHhcCChHHHHHHHHH
Q 046354 173 D--IVAWNAMITAY------VD---AGNMAQASELFNLMPQ---RNVW------TW--NAMIDRYARNGPEGAAMKLLNL 230 (510)
Q Consensus 173 ~--~~~~~~li~~~------~~---~g~~~~A~~~~~~~~~---~~~~------~~--~~li~~~~~~~~~~~A~~~~~~ 230 (510)
| -..|..++..+ .. ..++..+.....++.+ +|.. .| +.-+.-|...|+...+...+++
T Consensus 158 d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQ 237 (629)
T KOG2300|consen 158 DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQ 237 (629)
T ss_pred chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence 2 22333222211 11 2233444444444443 3321 12 2223345567777777776666
Q ss_pred HHH---CCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhh----hhhhhhhccccccccccC-------hhhH
Q 046354 231 MFQ---SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL----TYKCTCHYVFWDWGFQLD-------VNSA 296 (510)
Q Consensus 231 m~~---~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~-------~~~a 296 (510)
+++ .+-.|+...=..++.+- ... ...+-|...+ +......- .-.|- -|++
T Consensus 238 LQ~siqtist~~~~h~e~ilgsp-s~~----------l~~wlpkeqicaLV~l~tv~hs-----m~~gy~~~~~K~tDe~ 301 (629)
T KOG2300|consen 238 LQDSIQTISTSSRGHDEKILGSP-SPI----------LFEWLPKEQICALVYLVTVIHS-----MPAGYFKKAQKYTDEA 301 (629)
T ss_pred HHHHHhccCCCCCCccccccCCC-ChH----------HHhhccHhhhHhhhhhhHHhhh-----hhhHHHHHHHHHHHHH
Confidence 654 22222110000000000 000 0000000000 00000000 11222 3344
Q ss_pred HHHhcccCCCC--hhh--------HHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCch-------hHHHHHHh-cCcCC
Q 046354 297 RLAFERLEAKD--VVS--------WTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEI-------TFVGVLSD-CSHAG 357 (510)
Q Consensus 297 ~~~~~~~~~~~--~~~--------~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-------~~~~li~~-~~~~g 357 (510)
....++.++.+ ... ...++-.=.-.|++.+|++-+..|.+-- -.|.+. ....++.. |+..|
T Consensus 302 i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~ 381 (629)
T KOG2300|consen 302 IKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN 381 (629)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc
Confidence 44444444433 112 2222223334799999999999998731 123311 12223333 45678
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchh--HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHH--------HHHH--HHhh
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA--------LLGA--CRLH 425 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------l~~~--~~~~ 425 (510)
.++.|..-|....+. -..-|...+ ..+.-.|.+.|+.+.-.++++.+. .|+..++.. ++.+ ....
T Consensus 382 ~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~--p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 382 CYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG--PLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 899999988888765 333333322 346677889999888888888776 332222211 1222 2467
Q ss_pred CCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHcCCChHHHHHHHHHH---HhhccccceeE
Q 046354 426 GDVRMADYIGERLIELQPS------SSGAYVLSANVHAARGEWDEFAQVRKKME---RRVKKVASFSQ 484 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~ 484 (510)
+++.+|...+.+.++.... ..-....|+.+....|+..++.+...-.. +.++..|..-|
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 8999999999998855411 11225667777888999999887765444 45555554444
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.12 E-value=1.8 Score=23.84 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|..++.+|...|++++|.+.|++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468889999999999999999999766
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.07 E-value=0.44 Score=37.78 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=26.1
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
++..+.+.+.++....+++.+... +...++...+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555543 333344455555555555555555555554
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.64 E-value=90 Score=36.66 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=45.4
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
..+|...++...+.|+++.|...+=...+.. -+..+...+.-....|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567777888888999999987765555343 2334445566677889999999999999843
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.00 E-value=29 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=26.7
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCC----------CcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKP----------RAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
.|...|...|.+....++++++........ -..+|..=+.+|..+.+-..-..++++.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 344445555555555555555544311000 0234444455555555555544555443
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.94 E-value=13 Score=28.66 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=50.5
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCC-CCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPP-HER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.++..+--.+..++.+..+. .+-+.+++...+ ..| ......-|.-++.+.++++.+.++.+..++.+|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45555556667777766554 445567776664 344 33345556677889999999999999999999888654
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.62 E-value=2.9 Score=24.19 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888889999999888888754
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.55 E-value=24 Score=31.39 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
+++.....|..+|.+.+|.++.+.... .+...|-.++..+...|+--.|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344555677888888888888877766 3556677788888888887777777766643
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.34 E-value=2.5 Score=34.31 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=34.8
Q ss_pred hHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERD-HVVLGALLGACRLHG-----------DVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+++|+.-|++....+|+ ..++..+..++...+ .+++|...|+++...+|++. .|..-..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Confidence 34455555555555774 457777776665432 36777888888889999985 44433333
No 349
>PRK10941 hypothetical protein; Provisional
Probab=82.98 E-value=4 Score=36.19 Aligned_cols=69 Identities=13% Similarity=-0.016 Sum_probs=58.2
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
.+.+-.+|.+.++++.|.++.+.+....| ++.-+.--.-.|.+.|.+..|..-++..++..|++|..-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34567788999999999999999987777 5566777777799999999999999999999999886643
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.64 E-value=22 Score=34.97 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.9
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+-|....+
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45567777666654443 445577777777777777777776666544
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.60 E-value=49 Score=32.08 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
....+++..+..+..+.-...+..+|.. .+-..|..++.+|..+ ..++-..+++++.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 3444555555555555555555555554 4555666666666665 44555566665544
No 352
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.21 E-value=3.4 Score=22.18 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999998888888877776553
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.21 E-value=6.9 Score=28.38 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....+....|-
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~ 83 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYP 83 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHH
Confidence 788888888999999999999999999988855444433443
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.92 E-value=3.8 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
.+..+|...|+.+.|.+++++....|-.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 4677888889999999998888865543
No 355
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.67 E-value=38 Score=30.12 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=50.4
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH-HHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS-ANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~ 456 (510)
++.....+...|.+.|++.+|+..|-... .|+...+..++......|. |.....|..- +--|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT--DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHH
Confidence 67788889999999999999988775544 3433333223333333333 3333333332 2336
Q ss_pred HHcCCChHHHHHHHHHH-Hhhcccccee
Q 046354 457 AARGEWDEFAQVRKKME-RRVKKVASFS 483 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~-~~~~~~p~~~ 483 (510)
.-.|+...|...++... +-+...|.+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~~~~~~p~~~ 179 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSKLIESHPKLE 179 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHH---EE
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCcchh
Confidence 77899999999988887 3233345443
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.63 E-value=67 Score=32.96 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHHhcCChhhHHHHHHhccccCC---ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 107 (510)
++.+.+.+.+++|+...+......| -......+|..+...|++++|-+..-.|...+..-|..-+..+...++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 6678889999999999888777655 345677788888889999999999888887777777777777776666543
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.47 E-value=18 Score=26.24 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
+..+...|++++|..+.+...-||...|-+|-. .+.|-.++...-+..|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 346778899999999999988899999877764 46777777777777776665 344444443
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.37 E-value=6.7 Score=33.01 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=52.3
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+.-+..+.+.+.+++++...+.-.+.+| |..+-..++.-++-.|++++|..-++-.-.+.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44456677888999999988877665666 666777788889999999999999998888888864
No 359
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=80.94 E-value=54 Score=31.43 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=94.0
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 111 (510)
++++...| +.+...+-......++...+.....++....+......+.+.+..++..+....++++...+..+....+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 67787888 5678877777754466665555444444333444456666666777777888999999888887777666
Q ss_pred HHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHH
Q 046354 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191 (510)
Q Consensus 112 ~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 191 (510)
..-+.. ++.......+.++...+.- . .+.+...+ ..+|..+-..-+.++...++.+
T Consensus 123 ~~~L~~--~~p~vR~aal~al~~r~~~-~------------------~~~L~~~L---~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 123 EPLLAA--SEPPGRAIGLAALGAHRHD-P------------------GPALEAAL---THEDALVRAAALRALGELPRRL 178 (410)
T ss_pred HHHhcC--CChHHHHHHHHHHHhhccC-h------------------HHHHHHHh---cCCCHHHHHHHHHHHHhhcccc
Confidence 666654 4444444444444433211 0 11111111 1444455555555555555433
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 046354 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230 (510)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 230 (510)
-.-.+..-....|..+-..-+.+....|. ++|...+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 32222222333555555555555555555 444444443
No 360
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.94 E-value=11 Score=27.04 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 67777777788888888888888888887764333
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.82 E-value=10 Score=37.01 Aligned_cols=87 Identities=13% Similarity=0.005 Sum_probs=49.1
Q ss_pred cCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
.|+...|...+.......| .......|.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 5666666666555543444 22234445555555555556666666666555555555666666666666666666666
Q ss_pred HHHHHhhcc
Q 046354 470 KKMERRVKK 478 (510)
Q Consensus 470 ~~~~~~~~~ 478 (510)
+...+.-++
T Consensus 700 ~~a~~~~~~ 708 (886)
T KOG4507|consen 700 RQALKLTTK 708 (886)
T ss_pred HHHHhcCCC
Confidence 655533333
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.80 E-value=68 Score=32.82 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 046354 180 MITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYAR 217 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (510)
+|-.|.++|++++|.++..+... .....+-..+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34455666666666666633222 223344444444444
No 363
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=5.3 Score=35.91 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=63.5
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC---CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH---ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
..-|.+..++..|...|.+..+. .| +...|+.-..+-...|++..|+.-...++..+|.+...|..-+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 45566778888888888776543 33 44566666666667789999999999999999999888888888888888
Q ss_pred CChHHHHHHH
Q 046354 461 EWDEFAQVRK 470 (510)
Q Consensus 461 ~~~~A~~~~~ 470 (510)
++++|....+
T Consensus 168 ~~~~a~nw~e 177 (390)
T KOG0551|consen 168 RFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHh
Confidence 7555554443
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.51 E-value=13 Score=28.69 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHHH--hcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 430 MADYIGERLI--ELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 430 ~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
.+..+|+.|. +.....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887 45556666699999999999999999999874
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.45 E-value=58 Score=31.51 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=73.0
Q ss_pred CCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 375 FKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR--LHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 375 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
..|+..++ +.+++-+.+.|-.++|..++......+| +...|..++..-. ..-+..-+...|+.+......++..|.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 34544444 6788888889999999999998887755 7777877776432 223478889999999855557778888
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.....-...|+.+.+-.++.+..
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHH
Confidence 87777778888888877776665
No 366
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.70 E-value=34 Score=33.56 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=27.6
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHH-hhCCHHHHHHHHHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACR-LHGDVRMADYIGERL 438 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 438 (510)
.+.+.|.+.-|.++.+-+.+..| |+.....+|..|+ +..++.--+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455666666666665555544 3444455555543 445555555555555
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.65 E-value=7.1 Score=32.55 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=11.6
Q ss_pred CcHHHHHHHHHHHHhhCCHHHH
Q 046354 410 RDHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A 431 (510)
+|+..+.+|++.+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3455555555555555555544
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.50 E-value=55 Score=33.38 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh----------hHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ-RNVW----------TWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPN 239 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~ 239 (510)
.+...++-.|....+++...++.+.++. ||.. .|.-.++---+-|+-++|+.+.-.|++.. +.||
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4556667778888888888888887776 4321 23333333344677888888887776642 4555
No 369
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.48 E-value=3.1 Score=36.87 Aligned_cols=82 Identities=6% Similarity=-0.047 Sum_probs=58.5
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH-HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA-LLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.+..|+..|...+.--.+.|.+.+...++.+.....| |...|-. -..-+...++++.+..+|.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3455777777666666667777888888888776666 5556643 2223556789999999999999999999888665
Q ss_pred HHHH
Q 046354 452 SANV 455 (510)
Q Consensus 452 l~~~ 455 (510)
....
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 4433
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.83 E-value=20 Score=31.63 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 450 VLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
..++.++.+.|++.+|+.++..+....++
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 45777889999999999988877744443
No 371
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.18 E-value=72 Score=30.77 Aligned_cols=346 Identities=9% Similarity=0.037 Sum_probs=170.1
Q ss_pred hHHHHHHHhhcCCC---ChhhHHHHHHHHHhcC-ChhhHHHHHHhccccCCChhHHH-----HHHHHHHhcCChhhHHHH
Q 046354 10 VKEATKLFDEMSQP---DPVSCASMITVFLRNH-DLPKAEALFRAMPESQRNIVAES-----AMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 10 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~-----~li~~~~~~~~~~~A~~~ 80 (510)
++.|+.+.+.++.- .-.+++.|...+.+.. .+..|..++++..+...+...|+ -|+....-..++..|.+.
T Consensus 70 LekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 70 LEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 34444444444421 2346677777777755 88899999999887643333332 456666777899999988
Q ss_pred HHhhcc---CChhhHHHHHHHH------Hc---CCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 81 FDEIYE---GNVYSWTSLISGY------FK---ARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 81 ~~~~~~---~~~~~~~~li~~~------~~---~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
+.--.+ +-...|..++..+ .- ..+++.+.....+|.+. .+|..- ...+..+ ...
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~-~E~LkvF------------yl~ 216 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQ-KEMLKVF------------YLV 216 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHH-HHHHHHH------------HHH
Confidence 765533 2222333222211 11 22344455555555554 344321 2222211 111
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC-------------------CCChh-------------HHH-----HHHHHHHhc--C
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP-------------------NKDIV-------------AWN-----AMITAYVDA--G 188 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~-------------------~~~~~-------------~~~-----~li~~~~~~--g 188 (510)
.-+.-|.-.|+.+.+...++++. .|.+. +|. .+..+|.+. .
T Consensus 217 lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K 296 (629)
T KOG2300|consen 217 LQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQK 296 (629)
T ss_pred HHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHH
Confidence 22233444555555555544432 11111 111 112223221 2
Q ss_pred CHHHHHHHHhhCCCCC--hhhH--------HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhH---HHHHHHhhhhh
Q 046354 189 NMAQASELFNLMPQRN--VWTW--------NAMIDRYARNGPEGAAMKLLNLMFQSRF-MPNETTC---TSILTSCEGML 254 (510)
Q Consensus 189 ~~~~A~~~~~~~~~~~--~~~~--------~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~---~~ll~~~~~~~ 254 (510)
-.|+++...++.++.+ ...+ ..++.+-.-.|++.+|++-..+|.+... .|....+ ...|..
T Consensus 297 ~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~----- 371 (629)
T KOG2300|consen 297 YTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM----- 371 (629)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH-----
Confidence 2445555555555533 2222 2233333458999999999999987532 2331111 111110
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhh--HHHHHHHHHhcCChhhHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVS--WTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~l~~~~~~~g~~~~A~ 328 (510)
++.. .++..+.++.|+..|....+ .+... -..+...|.+.|+.+.-.
T Consensus 372 -----------------------LlGl----ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y 424 (629)
T KOG2300|consen 372 -----------------------LLGL----YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLY 424 (629)
T ss_pred -----------------------HHhh----HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHH
Confidence 0111 11556677777776665544 12221 223455677777665555
Q ss_pred HHHHHHHHcCCCCCchhHHHH--------HHh--cCcCCcHHHHHHHHHHHHHhhCCCC----CcchhHhHHhHHhhcCC
Q 046354 329 RLFARMLKSGTKPDEITFVGV--------LSD--CSHAGLVEKGRKTFNLMSRAYGFKP----RAEHYSCLADILRRAGQ 394 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~l--------i~~--~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 394 (510)
++++.. | +|+..++.+. +.+ ....+++.+|..++.+..+..+-.. ..-....|...+...|+
T Consensus 425 ~~ld~i---~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 425 KALDLI---G-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred HHHHhc---C-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 544432 2 3334333221 111 1356788888888777665422111 22233345556667777
Q ss_pred hHHHHHHHhh
Q 046354 395 VKEAMRVVSK 404 (510)
Q Consensus 395 ~~~A~~~~~~ 404 (510)
..++.+.+.-
T Consensus 501 ~~es~nmvrp 510 (629)
T KOG2300|consen 501 TVESRNMVRP 510 (629)
T ss_pred hHHHHhccch
Confidence 7777766543
No 372
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=76.88 E-value=72 Score=30.60 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=66.7
Q ss_pred HHHHHHHhhcC--CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCC
Q 046354 11 KEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88 (510)
Q Consensus 11 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 88 (510)
+.++..+-... .++...+.....++....+......+.+.+.. ++...-...++++...+..+....+...+..++
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d--~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~ 130 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQA--GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASE 130 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Confidence 44555554444 34455555444444433333334455555544 666677788899988888887777777776677
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcC
Q 046354 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136 (510)
Q Consensus 89 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 136 (510)
.......+.++...+. +....+..-+.. ++...-..-+.++...+
T Consensus 131 p~vR~aal~al~~r~~-~~~~~L~~~L~d--~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 131 PPGRAIGLAALGAHRH-DPGPALEAALTH--EDALVRAAALRALGELP 175 (410)
T ss_pred hHHHHHHHHHHHhhcc-ChHHHHHHHhcC--CCHHHHHHHHHHHHhhc
Confidence 7777666676665442 222222222222 55444444444444443
No 373
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.85 E-value=31 Score=32.38 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=46.6
Q ss_pred cHHHHHHH---HHHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHH-HHcCCChHHHHHHHHHH
Q 046354 411 DHVVLGAL---LGACRLHGDVRMADYIGERLIELQPS-SSGAYVLSANVH-AARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 473 (510)
|...|.++ +..+.+.|-+..|.++.+-++.++|. +|..-...+..| .++++++--+.+.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44444443 45677889999999999999999999 776666666665 56777877777777654
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.74 E-value=6.2 Score=27.05 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=30.8
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHH---HHHHHHcCCChHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLS---ANVHAARGEWDEFAQV 468 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~ 468 (510)
...+..+|+..++++++..++.+.-|..| +.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888887776666555444 4557777777777665
No 375
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.43 E-value=5.2 Score=33.94 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+..+.|+.+.|.+++.+..+..| ....|-.+.....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456777777777777776655 55577777777777777777777777777777765
No 376
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=49 Score=28.68 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=30.2
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+..++...|++-++++.-.++....| +...|-.-..+.+..-+..+|..-|..+++++|.-
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 33444445555555555555544434 33344444444444445555555555555555543
No 377
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=72 Score=29.82 Aligned_cols=194 Identities=9% Similarity=0.043 Sum_probs=120.4
Q ss_pred cCChhhHHHHHHhcccc-------CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHH
Q 046354 38 NHDLPKAEALFRAMPES-------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~-------~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 110 (510)
.++.+.|++-+-...+. ..+..++..+++.|...++|+.--+....+ .-+.|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~L--------------skkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLL--------------SKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH--------------HHHhhHHHHHHH
Confidence 56666666555444433 124556667778888888887655443332 224555555543
Q ss_pred HH-Hh---ccccCCChhhHHHHHHHHHh--cCCcc-h-hhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHH--
Q 046354 111 LF-DR---MPLKLKNVVSWTTVVLGCAH--NGLIA-K-LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM-- 180 (510)
Q Consensus 111 ~~-~~---m~~~~~~~~~~~~ll~~~~~--~~~~~-~-a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-- 180 (510)
-. ++ +.+..||..|--.++..+.. .|.+- + -....-..+...+...|+.++|..++.+.. +.||.++
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~ 167 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEK 167 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHH
Confidence 21 11 12224666666666665432 22211 1 144556678888999999999999998754 4444433
Q ss_pred ----------HHHHHhcCCHHHHHHHHhhCCC-----CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC
Q 046354 181 ----------ITAYVDAGNMAQASELFNLMPQ-----RNV-----WTWNAMIDRYARNGPEGAAMKLLNLMFQSR-FMPN 239 (510)
Q Consensus 181 ----------i~~~~~~g~~~~A~~~~~~~~~-----~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~ 239 (510)
++.|.-.+|+-.|.-+-+.+.. |+. .-|+.++......+.+=.+-+.|+..-..| ++-|
T Consensus 168 ~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d 247 (439)
T KOG1498|consen 168 SEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKED 247 (439)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccC
Confidence 4667888899888777666653 443 348888888888888989999998887765 4444
Q ss_pred HhhHHHHHH
Q 046354 240 ETTCTSILT 248 (510)
Q Consensus 240 ~~~~~~ll~ 248 (510)
+.-+...+.
T Consensus 248 ~~kw~~vL~ 256 (439)
T KOG1498|consen 248 PEKWIEVLR 256 (439)
T ss_pred hhhhhhhhh
Confidence 444444443
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.89 E-value=32 Score=25.59 Aligned_cols=40 Identities=10% Similarity=0.291 Sum_probs=30.6
Q ss_pred ChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
+++++++.+.+-. -|..++..|...|.+++|++++.++..
T Consensus 28 ~~~~~e~~L~~~~-----~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG-----KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555555554332 488899999999999999999998877
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.58 E-value=18 Score=35.45 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=75.4
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC--CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP--RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~ 429 (510)
....|+...|...+..+.- ..| .......|.....+.|-..+|..++.+.... ...+.++..+..++....+..
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3457888888888877753 344 2333456778888888888888888766544 345567788888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.|++.|+.+.++.|+++..-..|..+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999998775555443
No 380
>PF13934 ELYS: Nuclear pore complex assembly
Probab=74.46 E-value=34 Score=29.62 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHH--HhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccC--ChhhHHHHHHHHHcCC
Q 046354 28 CASMITVF--LRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEG--NVYSWTSLISGYFKAR 103 (510)
Q Consensus 28 ~~~li~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g 103 (510)
|...++++ ...+++++|.+.+-.-.- ....-..++.++...|+.+.|..++.....+ +...-..++.. ..++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcC
Confidence 33444444 345566666666522211 0111224556666667777777766665321 11222222333 4556
Q ss_pred ChHHHHHHHHhccccCCChhhHHHHHHHHH
Q 046354 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~ 133 (510)
.+.+|...-+...+. .....+..++..+.
T Consensus 155 ~v~EAf~~~R~~~~~-~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDE-LRRRLFEQLLEHCL 183 (226)
T ss_pred CHHHHHHHHHhCchh-hhHHHHHHHHHHHH
Confidence 666666666555442 11234445555444
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.42 E-value=64 Score=28.85 Aligned_cols=106 Identities=11% Similarity=0.175 Sum_probs=69.8
Q ss_pred ChHHHHHHHhhcCC-----CChhhHHHHHHHHHh-cC-ChhhHHHHHHhcc---ccCCChhHHHHHHHHHHhcCChhhHH
Q 046354 9 KVKEATKLFDEMSQ-----PDPVSCASMITVFLR-NH-DLPKAEALFRAMP---ESQRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 9 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~~-~~~~A~~~~~~~~---~~~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
-+.+|+++|+.... .|...-..+++.... .+ ....-.++.+-+. ...++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34567777774321 345555556665554 21 2222222222222 23567777888899999999999999
Q ss_pred HHHHhhcc-----CChhhHHHHHHHHHcCCChHHHHHHHHh
Q 046354 79 KVFDEIYE-----GNVYSWTSLISGYFKARQVDEGRRLFDR 114 (510)
Q Consensus 79 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 114 (510)
++++.... .|...|..+|+.....|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99888733 4778899999999999998877777654
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.39 E-value=89 Score=30.45 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=100.8
Q ss_pred ccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
+..-...-.+.+-.++.. .+-..|-.++..|... ..+.-..+|+++.+..+ -|...-..|..-|.+ ++.+.+..+
T Consensus 77 ~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~ 153 (711)
T COG1747 77 GDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEF 153 (711)
T ss_pred ccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHH
Confidence 555555555555555544 4556788888888888 66788889998888643 233333444444444 777888888
Q ss_pred HHHHHHhhCCCCC------cchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCcHHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 366 FNLMSRAYGFKPR------AEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 366 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
|.++..+ +-|. .+.|.-|...- ..+.+....+..++... ..-...+.-+-..|....++.+|.+++.
T Consensus 154 f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 154 FGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 8888764 3331 12333333211 34556666666555422 2234455555566778889999999999
Q ss_pred HHHhcCCCCchhHHHHHHHH
Q 046354 437 RLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~ 456 (510)
.+++++..+..+-..++.-+
T Consensus 230 ~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 230 HILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhhhcchhhhHHHHHHHHH
Confidence 98888877766655555443
No 383
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=74.34 E-value=22 Score=26.78 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH-------hcCCCCchhHHH----HHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLI-------ELQPSSSGAYVL----SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++-.|..++...|++++++...++.+ +++.+....|+. -+.++...|+.++|++.|+..-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3345556667777888877777666665 555555444544 3445788999999999887653
No 384
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.75 E-value=9.3 Score=36.29 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=76.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH-HHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhc
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG-VLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRA 392 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 392 (510)
+..+...++++.|..++.+.++ +.||...|-. -..++.+.+++..|+.=+..+.+. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4456667889999999999988 4676665443 347788999999988877777764 343 33343344556667
Q ss_pred CChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh
Q 046354 393 GQVKEAMRVVSKMPPHERDHVVLGALLGACRLH 425 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 425 (510)
+.+.+|...|+......|+..-....+.-|-..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 788899999988887789888777777666543
No 385
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.70 E-value=53 Score=28.67 Aligned_cols=165 Identities=12% Similarity=0.047 Sum_probs=81.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC-cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS-HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (510)
.++..+-+.|++++....++++...+...+..--+.+-.+|- ..|....+++++........-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 355667788999999999999988776666555444444442 223344555555555443111111 222223322221
Q ss_pred c------CChHHHHHHHhhCCC-C--CCcHHHH-HHHHHHHH----h--hC-----CHHHHHHHHHHHH-----hcCCCC
Q 046354 392 A------GQVKEAMRVVSKMPP-H--ERDHVVL-GALLGACR----L--HG-----DVRMADYIGERLI-----ELQPSS 445 (510)
Q Consensus 392 ~------g~~~~A~~~~~~~~~-~--~p~~~~~-~~l~~~~~----~--~~-----~~~~A~~~~~~~~-----~~~p~~ 445 (510)
. .--.++..+++...- . .+....| ..+-.-|. . .| -.+.|.+.|+++. .+.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 0 112344455554330 0 1212222 22111111 1 11 2367778888776 366777
Q ss_pred chhHHHHHH----HHHHcCCChHHHHHHHHHH-Hhhcc
Q 046354 446 SGAYVLSAN----VHAARGEWDEFAQVRKKME-RRVKK 478 (510)
Q Consensus 446 ~~~~~~l~~----~~~~~g~~~~A~~~~~~~~-~~~~~ 478 (510)
|.......+ .|...|+.++|.++-+... ..+..
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 655333222 2566899999999888776 44433
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.44 E-value=7 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSG 338 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g 338 (510)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777788888888877777544
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.96 E-value=11 Score=26.88 Aligned_cols=64 Identities=20% Similarity=0.058 Sum_probs=42.0
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCCCh-HHHHHHHHH
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--SGAYVLSANVHAARGEWD-EFAQVRKKM 472 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 472 (510)
.| |...-..+...+...|++++|.+.+-.+++.+++. ...-..++.++...|.-+ -+.++-.+|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44 55677778888888899999999888888666543 556777888888888754 344444333
No 388
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=46 Score=30.00 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKS---GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (510)
.+.+...++..-....+++.+...+-+++.. ...|+...+ ..++.|.+ -++++++.++..=..- |+-||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqY-GiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQY-GIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchh-ccccchhhHH
Confidence 3344445555555556666666666555542 122222222 22333322 2455666666555553 7777777777
Q ss_pred hHHhHHhhcCChHHHHHHHhhCC
Q 046354 384 CLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+++.+.+.+++.+|.++.-.|.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 77777777777777766665554
No 389
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.08 E-value=1.4e+02 Score=31.31 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=40.7
Q ss_pred HHHHhcCchHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChH
Q 046354 151 TGLERNAMTKLAREYFVQMPNKDI--VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (510)
+.|...|+++.|.++-+.- |+. .++..-...|.+.+++..|-+++-++. ..|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH
Confidence 4577888999888876653 232 233444566777888888888887774 33333444444444444
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.63 E-value=84 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH------HHHcCCChH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANV------HAARGEWDE 464 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~------~~~~g~~~~ 464 (510)
.|.+...++.+.+|..|.....+-.. ..+.|+-+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~kslIlPPEHiLKRGDSEA 420 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEA 420 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHhccCCHHHHhhcccHHH
Confidence 36677777888999887665444333 566676554
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.52 E-value=35 Score=30.16 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=56.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc--CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKS--GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR- 391 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 391 (510)
|++++..+++.+++...-+--+. .++|.. ...-|-.|.+.+.+..+.++-....+. .-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67888888888877655443321 244443 333444577888888888888877765 223334447777666643
Q ss_pred ----cCChHHHHHHHhh
Q 046354 392 ----AGQVKEAMRVVSK 404 (510)
Q Consensus 392 ----~g~~~~A~~~~~~ 404 (510)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6889998888743
No 392
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.08 E-value=21 Score=31.37 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccc
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
..+=.++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|++-++.....++..|.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 334456778899999999999999999999888888888899999999999888876655655553
No 393
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=69.68 E-value=1.7e+02 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHH
Q 046354 168 QMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA-AMKLLNLM 231 (510)
Q Consensus 168 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m 231 (510)
.+..+|..+-...+.++.+.+..+. +.....+++...-...+.++...+..+. +...+..+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~l 783 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRAL 783 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3335666666666666666554332 3333445666666666666666665432 33444444
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.56 E-value=1.1e+02 Score=29.50 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=50.7
Q ss_pred HHHHhcCChhhHHHHHHhcccc-CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhh---HHHHHHHHHcCCChHHH
Q 046354 33 TVFLRNHDLPKAEALFRAMPES-QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDEG 108 (510)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A 108 (510)
..+...|+++.+.+.+...... .....+...+++.....|+++.|...-+.|....+.+ ........-..|-++++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3345567777777776655443 3455566677777777778888877777775432222 11112222334566777
Q ss_pred HHHHHhcccc
Q 046354 109 RRLFDRMPLK 118 (510)
Q Consensus 109 ~~~~~~m~~~ 118 (510)
...++++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 7777766554
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.41 E-value=15 Score=27.87 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
+..+-++.+....+-|++......+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445556666667778777777888888888888888888777653
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.82 E-value=62 Score=30.71 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=39.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcC--cCCcHHHHHHHHHHHHHh
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCS--HAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~~~ 372 (510)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999887 666555 3444545553 566788888888887764
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.47 E-value=11 Score=31.65 Aligned_cols=44 Identities=23% Similarity=0.108 Sum_probs=31.3
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
+..++.....|++..+..++..+...|+.++|.+...++..+.|
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444467777777777777778888888888887777777
No 398
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.33 E-value=11 Score=33.54 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=42.7
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
.+.|+.++|..+|+......| ++.....+.......++.-+|-++|-+++-.+|.+..+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 467888888888887776666 4445555555555567788888888888888887765543
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.14 E-value=9.1 Score=34.67 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=56.8
Q ss_pred hcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 391 RAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
..|.++.|++.|...+...| ....|..-.+++.+.+....|++-+...++++|+....|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 35667777777777666654 34455555566677777777777777777777777666766666677777777777777
Q ss_pred HHHH
Q 046354 470 KKME 473 (510)
Q Consensus 470 ~~~~ 473 (510)
....
T Consensus 206 ~~a~ 209 (377)
T KOG1308|consen 206 ALAC 209 (377)
T ss_pred HHHH
Confidence 7665
No 400
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=66.78 E-value=99 Score=27.88 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHhcCChhhHH
Q 046354 308 VVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~ 328 (510)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346888888888888776544
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.76 E-value=23 Score=24.96 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=38.5
Q ss_pred HHhhCCCCChhHHHHHHHHHH---hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 165 YFVQMPNKDIVAWNAMITAYV---DAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
+++...+.++.|....=..-+ ..|+.+.|.++++.+. ..+..|..++.++...|+-+-|.
T Consensus 24 v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 24 VCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 333333344444443333333 5578888888888888 77778888888888877765554
No 402
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.55 E-value=82 Score=26.90 Aligned_cols=73 Identities=19% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLA 386 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 386 (510)
.+..++.+.+.+...+++...++-++.. +-|..+-..+++.+|-.|++++|..-++-... +.|+ ..+|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 3455667778888899998888777752 44555677788889999999999887776653 3443 44555555
Q ss_pred h
Q 046354 387 D 387 (510)
Q Consensus 387 ~ 387 (510)
+
T Consensus 80 r 80 (273)
T COG4455 80 R 80 (273)
T ss_pred H
Confidence 4
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.33 E-value=23 Score=26.32 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588999999999999999999999877
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.28 E-value=22 Score=25.61 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSS---------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+.||+..|.+.+.+..+..... ......++.+....|++++|...+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356688888877777776332211 1224556777888999999999988876
No 405
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.04 E-value=34 Score=29.28 Aligned_cols=60 Identities=20% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCH-------HHHHHHHHHHHhcCCC--C----chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDV-------RMADYIGERLIELQPS--S----SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..+.+.|...|+. ..|...|+++.+.... . ......++.+..+.|+.++|.+.|.++.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445556555653 3455555555533322 1 2346678888888888888888888887
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.43 E-value=30 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=10.1
Q ss_pred HHHhcCChhhHHHHHHhccc
Q 046354 34 VFLRNHDLPKAEALFRAMPE 53 (510)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~~~ 53 (510)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555444
No 407
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.34 E-value=2.2e+02 Score=30.97 Aligned_cols=108 Identities=6% Similarity=-0.003 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHH-HHHHHhh-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQ-ASELFNL-MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~-A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
.++..+-...+.++...+..+. +...+.. +..+|...-...+.++...|..+.+...+..+.. .++...-...+.
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~ 829 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAAR 829 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHH
Confidence 4555555555555555544322 2222222 3335555555566666666554443333333322 123333333444
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhc
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (510)
++..+...... ..+...--.++..+-...+.++
T Consensus 830 aL~~l~~~~a~-~~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 830 ALAGAAADVAV-PALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHhccccchH-HHHHHHhcCCCHHHHHHHHHHH
Confidence 44333322222 2222222244555555555555
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.02 E-value=19 Score=30.24 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=35.4
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
..++.+......+.+.+.....|++.+|..++.++...|+.++|.++.+++...-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444444444443334567777777777777778888888777777664455
No 409
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.33 E-value=13 Score=25.51 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=18.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-c-hhHHHHHHhcCcCCcHHHHHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPD-E-ITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~g~~~~a~~ 364 (510)
.++.++|+..|+...+.-..|. . .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444321111 1 134444455555555444443
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.29 E-value=1.4e+02 Score=28.28 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
....+.-+...|...|+++.|.+.|.+.. ...+..|-.+|..-.-.|+|........+..
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 35566677778888888888888888755 1223345555666666677766666555544
No 411
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.28 E-value=50 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHHHHH--hcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 431 ADYIGERLI--ELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 431 A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+..+|+-|. +.....+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556677776 3444555568888888899999999988886
No 412
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.96 E-value=1.8e+02 Score=29.46 Aligned_cols=170 Identities=12% Similarity=0.056 Sum_probs=101.6
Q ss_pred hhhHHHHhcccCC-CChhhHHHHHHH-----HHhcCChhhHHHHHHHHHH-------cCCCCCchhHHHHHHhcCcC---
Q 046354 293 VNSARLAFERLEA-KDVVSWTAMILA-----YSNHGHGFQVFRLFARMLK-------SGTKPDEITFVGVLSDCSHA--- 356 (510)
Q Consensus 293 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~--- 356 (510)
...+.+.++...+ .++..-..+... +....+++.|+.+|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 5667777776665 333333333332 4456789999999998877 55 233444555555543
Q ss_pred -C-cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc---CChHHHHHHHhhCCCCCCcHHHHHHHHHHHH----hhCC
Q 046354 357 -G-LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA---GQVKEAMRVVSKMPPHERDHVVLGALLGACR----LHGD 427 (510)
Q Consensus 357 -g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~ 427 (510)
. +.+.|..++....+. | .|+... .+...+... .+...|.++|.......-....+ .+...|. ...+
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-RLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCCcCCC
Confidence 2 677899999888774 3 333333 233333322 35789999998877332222222 2222222 2358
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANV--HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 473 (510)
.+.|..+++++-+.+ ++.+...++.. +.. ++++.+.-.+..+.
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 899999999998877 33443444333 333 78888777777666
No 413
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.53 E-value=1.1e+02 Score=26.60 Aligned_cols=80 Identities=9% Similarity=-0.090 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcch-hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH-HHHHHHHHhhCCHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEH-YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL-GALLGACRLHGDVRMADYI 434 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~ 434 (510)
..++.|...+.+.. .+.|+..+ |..=+..+.+..+++.+..--.+..+..||..-- -.+..+......+.+|+..
T Consensus 24 k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34444444444333 23444432 2333444445555555555555554445544422 2233334444555555555
Q ss_pred HHHHH
Q 046354 435 GERLI 439 (510)
Q Consensus 435 ~~~~~ 439 (510)
++++.
T Consensus 101 Lqra~ 105 (284)
T KOG4642|consen 101 LQRAY 105 (284)
T ss_pred HHHHH
Confidence 55553
No 414
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.36 E-value=12 Score=33.40 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=34.1
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
-+.|+.++|..+|+.... +.| ++....-+.......+++-+|-..|-+.....|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 467888888888888875 344 344444444444445566667777777665566
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.27 E-value=49 Score=25.71 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHhh---CCHHHHHHHHHHHHh-cCCCCch-hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 409 ERDHVVLGALLGACRLH---GDVRMADYIGERLIE-LQPSSSG-AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++..+--.+.+++.+. .+..+.+.+++...+ -.|.... ....|+-.+.+.|+++.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 56666666777777765 466788899999886 4444322 24556677899999999999998766
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.99 E-value=56 Score=26.92 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHh
Q 046354 359 VEKGRKTFNLMSRA 372 (510)
Q Consensus 359 ~~~a~~~~~~~~~~ 372 (510)
.+.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45566666666654
No 417
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.77 E-value=1.1e+02 Score=31.37 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc----------hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh-CCCC
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE----------ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY-GFKP 377 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 377 (510)
.+...++-+|....+++...++.+.++.- ||. ..|...++--.+.||-+.|+...-.+.+.. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45566777788888888888888888762 321 234444544556788888888777666542 2344
Q ss_pred CcchhH-------hHHhHHhhcCChHHHHHHHhhCCCCCCcHHH
Q 046354 378 RAEHYS-------CLADILRRAGQVKEAMRVVSKMPPHERDHVV 414 (510)
Q Consensus 378 ~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (510)
|..... -+...|...+..+.|.++|++.-+..|....
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s 322 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS 322 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc
Confidence 433221 1222344566778899999998877886554
No 418
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=1.6e+02 Score=27.70 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=61.8
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHH------------HHHHHhhCCHHHHHHHHHHHHhcCCCCch---
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGAL------------LGACRLHGDVRMADYIGERLIELQPSSSG--- 447 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 447 (510)
..|...+..+|++++|..++.+.+ ..||.++ +..|...+|+-.|--+-+++....-+.+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-----VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-----VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 457778889999999999998877 2333322 35577789999998888877633322222
Q ss_pred ----hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 ----AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ----~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.|..++......+.+=++.+.|+.+.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 26777777778888888888888776
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.99 E-value=14 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=24.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 353 (510)
-|.-..|..+|+.|.+.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46677899999999999999984 66666543
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.70 E-value=65 Score=22.77 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHHHHhhccCChhhHHHHHHHHH---cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcC
Q 046354 77 ARKVFDEIYEGNVYSWTSLISGYF---KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136 (510)
Q Consensus 77 A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 136 (510)
+.++++.+.+.++.|..-.=..-+ ..|+.+.|.+++..+. ..|+. |..++.++...|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~a--F~~Fl~aLreT~ 80 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGW--FSKFLQALRETE 80 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcH--HHHHHHHHHHcC
Confidence 345666666666666555444444 5577788888887777 44442 444444444333
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.08 E-value=2.7e+02 Score=29.74 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---chhHHHHHHhcCcCCcH--HHHHHHHHHHHHhhCCCCCcchhHh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD---EITFVGVLSDCSHAGLV--EKGRKTFNLMSRAYGFKPRAEHYSC 384 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
-|..|+..|...|+.++|+++|.+....--.-| ...+..++..+...+.. +-..++-+...+. .-.-...++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 489999999999999999999999886310011 11222344444444433 4444444444432 10001111111
Q ss_pred ------------HHhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHHHHhh--------CCHHHHHHH--HHHHH-
Q 046354 385 ------------LADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRLH--------GDVRMADYI--GERLI- 439 (510)
Q Consensus 385 ------------l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~- 439 (510)
-+-.|......+-+...++.+... .++....+.++.-|+.. ++.+++.+. .++..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 223345566667777777776533 34555556666665432 122233333 22222
Q ss_pred ------hcCCC-------CchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 046354 440 ------ELQPS-------SSGAYVLSANVHAARGEWDEFAQVRKKMERRV 476 (510)
Q Consensus 440 ------~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 476 (510)
..+|. ....|...+-.+.+.|+.++|+.++-....++
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~ 714 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDI 714 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcch
Confidence 11221 13457777788889999999999987665433
No 422
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.86 E-value=2.6e+02 Score=29.49 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHhcCChhhHHHHHHhccccCCCh--hHHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 33 TVFLRNHDLPKAEALFRAMPESQRNI--VAESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
..|...|++++|++.-+.- |+. .++..-...|.+.+++..|-+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4567788888887764433 322 23444456667777888887777776
No 423
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.59 E-value=1.9e+02 Score=27.77 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQR---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
..|+.-|.-.|+..+|.+.++++--| ....+-+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44566677777777777777766553 34556677777777777666666666665544
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.70 E-value=45 Score=20.35 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 249 (510)
...+.|-.+++...+++|.+.|+..+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345678888999999999999999998888887763
No 425
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.46 E-value=1.7e+02 Score=29.51 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHH--HHh-cCcCCcHHHHHHHHHHHHH-------hhCCCCCcchhHhHHhHHhhcC
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGV--LSD-CSHAGLVEKGRKTFNLMSR-------AYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g 393 (510)
...|..+++...+.|.. ........ ..+ +....|.+.|..+++.+.+ . + .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCC
Confidence 56788888888887632 22222222 233 5577899999999999977 3 4 3345556777776643
Q ss_pred -----ChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHh-hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc----CCC
Q 046354 394 -----QVKEAMRVVSKMPPH-ERDHVVLGALLGACRL-HGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR----GEW 462 (510)
Q Consensus 394 -----~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~ 462 (510)
+.+.|..++.+..+. .|+....-..+.-... ..|...|.+.|..+....- +..+..++.+|..- -+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCCH
Confidence 567799999887655 4555443222222222 2567899999999875443 34555555554332 267
Q ss_pred hHHHHHHHHHH-Hh
Q 046354 463 DEFAQVRKKME-RR 475 (510)
Q Consensus 463 ~~A~~~~~~~~-~~ 475 (510)
+.|..++++.. ++
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 88999988887 54
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.34 E-value=74 Score=22.70 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=24.4
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC---cHHHHHHHHHHHHhhCC
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER---DHVVLGALLGACRLHGD 427 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~ 427 (510)
|...-..+...+...|++++|.+.+-.+....| +...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445555666666677777777666555543332 22333444444444443
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.15 E-value=18 Score=23.58 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=9.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhc
Q 046354 94 SLISGYFKARQVDEGRRLFDRM 115 (510)
Q Consensus 94 ~li~~~~~~g~~~~A~~~~~~m 115 (510)
.+|.+|...|++++|.+.++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 428
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.66 E-value=38 Score=21.29 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=21.5
Q ss_pred HHHHHHhcCChhhHHHHHHhccccCCChhHHHHH
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAM 64 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l 64 (510)
+.-++.+.|++++|.+..+.+.+..|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3445667888888888888877777765444433
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.17 E-value=2.9e+02 Score=30.34 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 421 (510)
|..+++.+...+..+.+.++-..+.+ .++++ +.+++++.......|.+-+|...+-..+.......+...++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55666666777777777777666665 33333 3345666666777788877777766655333344566666666
Q ss_pred HHhhCCHH------------HHHH-HHHHHHhcCCCC-chhHHHHHHHHHHcCCChHHHHH
Q 046354 422 CRLHGDVR------------MADY-IGERLIELQPSS-SGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 422 ~~~~~~~~------------~A~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+..+|.++ +.+. +++..-+..|-. ..+|..|-..+...++|.+|-.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66555443 2333 333332333322 22344454456677777776655
No 430
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.33 E-value=50 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=23.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355667777777888877777777776666654
No 431
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.94 E-value=59 Score=28.88 Aligned_cols=87 Identities=8% Similarity=-0.058 Sum_probs=58.8
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHHHHh--
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRL-- 424 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~-- 424 (510)
-|++++..+++.++..+.-...+. .-+..+.+...-|-.|.+.|.+..+.++-...... +-+...|.+++.-|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 467888888998887765444432 22234555666677889999999888887766532 2234457777766654
Q ss_pred ---hCCHHHHHHHHH
Q 046354 425 ---HGDVRMADYIGE 436 (510)
Q Consensus 425 ---~~~~~~A~~~~~ 436 (510)
.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 589999988873
No 432
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.82 E-value=1.9e+02 Score=26.70 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=47.4
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH---cCCChHHHHHHHH
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA---RGEWDEFAQVRKK 471 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 471 (510)
+.-+.+++++.+..| +...+..++..+.+..+.++..+.+++++...|+++..|...+..... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 344455666554555 444556666666666777777777777777777777776666655443 2245555555554
Q ss_pred HH
Q 046354 472 ME 473 (510)
Q Consensus 472 ~~ 473 (510)
..
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 44
No 433
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.37 E-value=50 Score=25.20 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
-|++.....-+.+|.+.+|+..|.++++-.+...+..
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~ 117 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ 117 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH
Confidence 5777777777888888888888888888777444433
No 434
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.35 E-value=51 Score=31.13 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhhcc
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 478 (510)
+.+-+|.-+++..+...|.+...-..++.+|...|-.+.|.+.|+.+. +.++-
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~ 250 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQL 250 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHH
Confidence 345667777888888888888888888888888888888888888877 66554
No 435
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.52 E-value=92 Score=22.63 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (510)
..+.++++... +....+.....|.-.|.+.|+-+.|.+-|+.-+..-|...+|
T Consensus 56 le~~~ek~~ak-~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAK-NGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHhhc-CCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444554443 333333334445555566666666666655544444544443
No 436
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.30 E-value=2.5e+02 Score=27.54 Aligned_cols=111 Identities=8% Similarity=0.023 Sum_probs=79.3
Q ss_pred hhhHHHHhcccCCCChhhH-HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC--cCCcHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEAKDVVSW-TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS--HAGLVEKGRKTFNLM 369 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 369 (510)
.+.....+..+..++..++ +.++.-+-+.|-..+|...+..+... .+|+...|..+|..-. .+-+..-+..+++.+
T Consensus 444 ~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 444 LDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 3444555566666666554 55777788899999999999999875 4666667777765321 112377889999999
Q ss_pred HHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
...+| .++..|...+..-...|..+.+-.++.++.
T Consensus 523 ~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 523 LREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 99888 667777766666668888888887776543
No 437
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.14 E-value=2e+02 Score=26.52 Aligned_cols=110 Identities=5% Similarity=-0.064 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh---hCCHHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL---HGDVRMADYIGER 437 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 437 (510)
-+.+++++.+. .+.+......++..+.+....++..+-++++....| +...|...+..... .-.++....+|.+
T Consensus 50 klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34444444442 122333444444444444444555555555543334 34455555544332 1234444444444
Q ss_pred HHhcC-----------CCCch-------hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 438 LIELQ-----------PSSSG-------AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 438 ~~~~~-----------p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..- +..+. .+..+...+..+|-.+.|..+++.+.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 43100 00011 13333444666777777777777666
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.74 E-value=36 Score=30.55 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.9
Q ss_pred CChhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 203 RNVWT-WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 203 ~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
++..+ |+..|..-.+.||+++|++++++....|+.--..||...+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 45444 67899999999999999999999999998777666655443
No 439
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.46 E-value=2e+02 Score=26.16 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
++|+.|...++.|.-..|.-+.-.+.+.=.....+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 5566666666666666665555555555556666666666654
No 440
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.21 E-value=1.4e+02 Score=24.99 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=11.9
Q ss_pred HHHcCCChHHHHHHHHHH
Q 046354 456 HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~ 473 (510)
..+.|+++.|.+.++-|.
T Consensus 131 ~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 131 LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 445667777777777666
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.79 E-value=48 Score=23.32 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=41.1
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHH
Q 046354 166 FVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 224 (510)
+..+.+..+.+....-..-....+.+++.++++.++.+...+|..+..++...|...-|
T Consensus 22 ~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 22 WDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 33333444445544445555667788899999988888888898888888877765544
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.54 E-value=48 Score=18.78 Aligned_cols=17 Identities=18% Similarity=-0.076 Sum_probs=7.6
Q ss_pred HHHHHHhhCCHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYI 434 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~ 434 (510)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344444555555555
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.46 E-value=25 Score=30.04 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+.+|.+.|.+++.+++++.|.....|..++..-.+.|+.+.|.+.+++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999998765
No 444
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.28 E-value=1.3e+02 Score=23.80 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCchhHHHHHHhcCcCCc-HHHHHHHHHHHHHhhCCCCCcchhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSG-----TKPDEITFVGVLSDCSHAGL-VEKGRKTFNLMSRAYGFKPRAEHYS 383 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (510)
..|+++.-.+..+++...+.+++.+..-. -..+..+|..++.+.++..- --.+..+|.-+.+. +.++++..|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-DIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 46667776677777777777777764321 13455678888888877666 44567778888775 7888888898
Q ss_pred hHHhHHhhc
Q 046354 384 CLADILRRA 392 (510)
Q Consensus 384 ~l~~~~~~~ 392 (510)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887654
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.08 E-value=1.3e+02 Score=28.67 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQRN----------------VWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
.-..++..+....+..+-++..+.-..|+ -.+...|++.++-.||+..|+++++.+
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 33345566666666766666665544321 133456677888899999999888765
No 446
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.02 E-value=3.7e+02 Score=28.85 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.-|..|+..|...|+.++|++++.+..+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3589999999999999999999999866
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.45 E-value=1.3e+02 Score=26.21 Aligned_cols=59 Identities=17% Similarity=0.016 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+-....++...|++-++++..++++...|.+..+|..-+.+....=+..+|..-|....
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34445566677888888888888888888888888888888777777777777666554
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.88 E-value=64 Score=28.40 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChhhHHHHHHhhcc---------CChhhHHHHHHHHHcCCChHHHHHHH
Q 046354 63 AMIDGYVKAGRVDEARKVFDEIYE---------GNVYSWTSLISGYFKARQVDEGRRLF 112 (510)
Q Consensus 63 ~li~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~ 112 (510)
.+..-|.+.|++++|.++|+.+.. ....+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344556666666666666666521 11223334444445555555444443
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.36 E-value=2.2e+02 Score=25.71 Aligned_cols=178 Identities=12% Similarity=-0.013 Sum_probs=109.8
Q ss_pred ccccChhhHHHHhcccCC-CChhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCc
Q 046354 288 GFQLDVNSARLAFERLEA-KDVVSWTAMILAYSN----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGL 358 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 358 (510)
...+++..+...+..... .+......+...|.. ..+..+|..+|+.+.+.|..+-... +...+.. ..+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~---lg~~~~~G~gv~~d 128 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFN---LGLMYANGRGVPLD 128 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHh---HHHHHhcCCCcccC
Confidence 455667777777777665 233344444444443 3467889999998877774433322 2222222 448
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-------ChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCC
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-------QVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGD 427 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 427 (510)
..+|..+++.+.+. |..+.......+...|...+ +...|...+.++.... +......+...|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcC
Confidence 89999999999887 66654223344445554431 2336788887765332 34444444444433 348
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC---------------CChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARG---------------EWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~ 473 (510)
.++|...|+++-+... ......++ .+...| +...|...+....
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 8999999999987776 45666666 666555 6667777777665
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.05 E-value=36 Score=30.54 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 350 (510)
-|+..|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888888889999999998888888765555554443
No 451
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.89 E-value=86 Score=22.05 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhc
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~ 135 (510)
.+++.+.+.++.+....-..-....+.++|.++++.+.. .+..+|..+..++...
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLET--RGKQAFPAFLSALRET 74 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 455555555555555555555555566666666666655 4444455554444433
No 452
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.43 E-value=1.2e+02 Score=22.43 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++-.+|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 456778888888855545555588888876654 57888888888887775554
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.89 E-value=1.1e+02 Score=21.83 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=26.7
Q ss_pred HhcCChhhHHHHHHhcccc-----CCC---hhHH--HHHHHHHHhcCChhhHHHHHHhhc
Q 046354 36 LRNHDLPKAEALFRAMPES-----QRN---IVAE--SAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 36 ~~~~~~~~A~~~~~~~~~~-----~p~---~~~~--~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
.+.|++.+|.+.+.+..+. .+. ...+ -.+.......|++++|.+.+++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4677777776655555433 111 1111 123344556677777777776663
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.78 E-value=42 Score=21.90 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
-.-.+|.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567888888888888888877744
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.43 E-value=2.4e+02 Score=25.39 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCchhHHH-HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc-h
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLK----SGTKPDEITFVG-VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-H 381 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 381 (510)
..+|..+..-|++.++.+.+.+...+... .|.+.|...... +.-.|....-+++-++..+.+.++ |-..+.. -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 34677777888888888877776655433 356665442222 222344444566777777777776 6555422 1
Q ss_pred hHhHHhH-HhhcCChHHHHHHHhhCC
Q 046354 382 YSCLADI-LRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 382 ~~~l~~~-~~~~g~~~~A~~~~~~~~ 406 (510)
|...-.. +....++.+|..++....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2111111 123345666666665443
No 456
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.20 E-value=2.4e+02 Score=27.10 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc---CC
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA---GQ 394 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 394 (510)
+...|++.+|+..|+.++.. ..+.......+.+++.+++....+- +...-++.-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 45689999999999987653 2222233344455666655554331 111111111111 11
Q ss_pred hH---HHHHHHhhC--CCCCCcHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 395 VK---EAMRVVSKM--PPHERDHV--VLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 395 ~~---~A~~~~~~~--~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+ +..++-.-+ .+++|.+. +++.-+..+.+.+++..|-.+.++++++.|...
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 12 222222222 22455433 667777888999999999999999999988753
No 457
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.86 E-value=2e+02 Score=27.45 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ-----------RNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
+...|++.++-.||+..|+++++.+.- -.+.++..+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999887752 245667888889999999999999998874
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.80 E-value=1.5e+02 Score=22.82 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 361 KGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
.+.++|..|... |+-. -...|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444443 3322 22334444444445555555555443
No 459
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.68 E-value=2.1e+02 Score=24.63 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC---cchh--HhHHhHHhhcCChHHHHHHHhhCCCC--CCc
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR---AEHY--SCLADILRRAGQVKEAMRVVSKMPPH--ERD 411 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 411 (510)
+.+...-++.|+--|.-...+.+|...|..-. |+.|. ...+ ..-|......|++++|++........ ..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 56677777777766665555555555554432 66662 2222 23566678899999999888776522 223
Q ss_pred HHHHHHHHH----HHHhhCCHHHHHHHHHHHH
Q 046354 412 HVVLGALLG----ACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 412 ~~~~~~l~~----~~~~~~~~~~A~~~~~~~~ 439 (510)
...+-.|.. -..+.|..++|++.++.-+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 322222221 2456788888888888644
No 460
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.78 E-value=2.3e+02 Score=24.70 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
.....-+..|...-++.-|-...+++.+|=-.-...|= |.+..+..--.++.+-....++.-+..-+..++-
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLR--ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif------ 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILR--YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF------ 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhh--hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh------
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----------------CChhhHHHHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----------------KDVVSWTAMILAY 318 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~l~~~~ 318 (510)
...|+...|...++.-.. |.+.....++..|
T Consensus 203 ---------------------------------ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~ 249 (333)
T KOG0991|consen 203 ---------------------------------TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC 249 (333)
T ss_pred ---------------------------------hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 349 (510)
.. +++++|.+++.++.+.|+.|....-+..
T Consensus 250 ~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 250 LK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred Hh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 461
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.73 E-value=3e+02 Score=26.44 Aligned_cols=139 Identities=10% Similarity=-0.063 Sum_probs=70.8
Q ss_pred ccccChhhHHHHhcccCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH--HHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEAKD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF--VGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~ 361 (510)
+..|+.+.+..+++.-...+ ..-.+ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 77888888888877543311 11122 23334455665 455556667777654321 223444456677665
Q ss_pred HHHHHHHHHHhhCCCCCcch--hHhHHhHHhhcCChHHHHHHHhhCCCCC-CcHHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEH--YSCLADILRRAGQVKEAMRVVSKMPPHE-RDHVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
+..++ +. |..++... -.+.+...+..|+.+-+.-+++...... .+.....+++......|+.+-+.-+++
T Consensus 151 v~~Ll----~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 151 IELLI----DH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHHHH----hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 44444 33 54443221 1233444556788887777777655221 111111234443445677665554444
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.66 E-value=1.4e+02 Score=22.19 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=47.3
Q ss_pred cCChhhHHHHHHhccccCCChh-HHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 046354 38 NHDLPKAEALFRAMPESQRNIV-AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 116 (510)
....++|..+.+.+...+...+ +--..+..+...|++++|...=.....||...|-+|. -.+.|-.+++...+.++.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 3455778777777776533222 2223346677888898885444444667888877664 456788888888888776
Q ss_pred c
Q 046354 117 L 117 (510)
Q Consensus 117 ~ 117 (510)
.
T Consensus 97 ~ 97 (116)
T PF09477_consen 97 S 97 (116)
T ss_dssp T
T ss_pred h
Confidence 5
No 463
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.12 E-value=3.1e+02 Score=26.08 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+.-+...|..+|+++.|++.|.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677889999999999999998665 2344566777777778888888877777654
No 464
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.11 E-value=1.1e+02 Score=30.85 Aligned_cols=83 Identities=13% Similarity=0.002 Sum_probs=53.0
Q ss_pred hcCChHHHHHHHhhCCCCCC-c------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 391 RAGQVKEAMRVVSKMPPHER-D------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p-~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
+..++..+.+.|..-...-| | ......+.-+|....+.+.|.++++++-+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 34556666666654322211 1 2244556666677777777777777777777777766666666677777777
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|+.......
T Consensus 446 ~AL~~~~~~~ 455 (872)
T KOG4814|consen 446 EALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.78 E-value=2.8e+02 Score=25.41 Aligned_cols=176 Identities=16% Similarity=0.060 Sum_probs=89.8
Q ss_pred ChhhHHHHhccc-CC-CChhhHHHHHHHHHhcC-----ChhhHH--------HHHHHH-HHcCCCCC--chh----HHHH
Q 046354 292 DVNSARLAFERL-EA-KDVVSWTAMILAYSNHG-----HGFQVF--------RLFARM-LKSGTKPD--EIT----FVGV 349 (510)
Q Consensus 292 ~~~~a~~~~~~~-~~-~~~~~~~~l~~~~~~~g-----~~~~A~--------~~~~~m-~~~g~~p~--~~~----~~~l 349 (510)
.+..+.+++..+ .. ++...|..++..+.... ..+... .++..+ .+.|..+. ... ....
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 466677777777 33 56667776665443221 111111 122222 22355554 222 2222
Q ss_pred -HHhcC-cCCcHHHHHHHHHHHHHhhCC----CCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Q 046354 350 -LSDCS-HAGLVEKGRKTFNLMSRAYGF----KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR 423 (510)
Q Consensus 350 -i~~~~-~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 423 (510)
+...| ..+-.+.|.+.|+..... +. ..++.....+.....+.|..+.-..+++... ..++...-..++.+..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~-~~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDG-NDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK-NSTSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHT-TT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH-TTSTHHHHHHHHHHHT
T ss_pred HHHHhccchhHHHHHHHHHHHHhcC-CcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh-ccCCHHHHHHHHHhhh
Confidence 33333 222356778888888763 22 3455666667777778888666555555554 3456777788888888
Q ss_pred hhCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHcCCC--hHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQ-PSSSGAYVLSANVHAARGEW--DEFAQVRK 470 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 470 (510)
...+.+...++++.++..+ -........+ ..+...+.. +.+++++.
T Consensus 213 ~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSNDKVRSQDIRYVL-AGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp T-S-HHHHHHHHHHHHCTSTS-TTTHHHHH-HHHH-CSTTCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcccccHHHHHHH-HHHhcCChhhHHHHHHHHH
Confidence 8889998889999888632 1122223333 333334443 55655554
No 466
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=41.71 E-value=4.5e+02 Score=27.78 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=20.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
+.-.|+++.|+..+...-.. ..|.+.+...+..+
T Consensus 478 LlLsgqfe~AI~fL~~~~~~--~~dAVH~AI~l~~l 511 (835)
T KOG2168|consen 478 LLLSGQFERAIEFLHREEPN--RIDAVHVAIALAEL 511 (835)
T ss_pred HHHHHhHHHHHHHHHhhcCC--cchhHHHHHHHHHh
Confidence 34467888888887776332 24566666555543
No 467
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=41.43 E-value=1.2e+02 Score=21.00 Aligned_cols=49 Identities=2% Similarity=-0.011 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCC
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQ 104 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 104 (510)
|+...-...+.++.+.++.+-...+.+.+..+|..+....+.++.+.|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3443333444444444433332233333333444555555555555543
No 468
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=3.2e+02 Score=25.99 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH--------HhcCcCCcHHHHHHHHHHHHHhhCCCCC
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL--------SDCSHAGLVEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--------~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (510)
+...+-.++-.+..+.++.+|.++-+.....-..-|..|+..+. .++...|+...-..++....+...+..|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred ----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC-------CHHHHHHHHHHHHhcCCCCch
Q 046354 379 ----AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG-------DVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 379 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~p~~~~ 447 (510)
....|.|++.|...+.++.|..+..+.. -|+...-+-......-.| ++..|.+.+-.++...|.+..
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Q ss_pred h--------HHHHHHHH
Q 046354 448 A--------YVLSANVH 456 (510)
Q Consensus 448 ~--------~~~l~~~~ 456 (510)
. +..++..+
T Consensus 283 lGf~q~v~k~~ivv~ll 299 (493)
T KOG2581|consen 283 LGFRQQVNKLMIVVELL 299 (493)
T ss_pred hhHHHHHHHHHHHHHHH
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.39 E-value=1.1e+02 Score=26.91 Aligned_cols=53 Identities=9% Similarity=-0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHcCCChHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPS------SSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
..+..-|...|++++|.++|+.+...--. .......+..++...|+.++.+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34455566667777777777766422111 112234455556666666665554
No 470
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.08 E-value=1.8e+02 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCC
Q 046354 425 HGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.++...|...++++.+++|+.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCC
Confidence 456778888888888888764
No 471
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=40.01 E-value=1.8e+02 Score=22.95 Aligned_cols=62 Identities=23% Similarity=0.140 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+.|.++.+-|- ...............|++.-|.++.+.++..+|++...-...+.+|...|.
T Consensus 58 ~~A~~~v~l~G----G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG----GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44455555443 222233344556678999999999999999999998888888888877664
No 472
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.86 E-value=1.1e+02 Score=22.32 Aligned_cols=25 Identities=24% Similarity=-0.021 Sum_probs=15.3
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 421 ACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.|.+.|+.+.|.+-|+.-+.+.|.+
T Consensus 81 Lys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCccc
Confidence 3555666666666666666666665
No 473
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.80 E-value=4.9e+02 Score=27.69 Aligned_cols=210 Identities=9% Similarity=-0.087 Sum_probs=110.0
Q ss_pred HHHHhcCchHHHHHHHhhCC----CCChh-------HHHHHH-HHHHhcCCHHHHHHHHhhCCC--------CChhhHHH
Q 046354 151 TGLERNAMTKLAREYFVQMP----NKDIV-------AWNAMI-TAYVDAGNMAQASELFNLMPQ--------RNVWTWNA 210 (510)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~----~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 210 (510)
.......++.+|..+..+.. .|+.. .++.+- ......|+++.|.++-+.... +.+..+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456678888888877654 32221 233332 223456888888887765543 45677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh--------hh--hhhhhHHHHHHHHhCCC------cchhh
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC--------EG--MLENMLAHALAIRLGFE------QETSL 274 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--------~~--~~~~~~~~~~~~~~~~~------~~~~~ 274 (510)
+..+..-.|++++|..+..+..+..-.-+...+....... ++ .......+......... .-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888999999999999888776654444444444333311 00 01111111111111100 11112
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC------CCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA------KDV----VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 344 (510)
...+...+ .+ ++.+..-.....+ +.. ..+..|+......|+.++|...+.++......++..
T Consensus 583 r~~ll~~~-----~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 583 RAQLLRAW-----LR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHHH-----HH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 22222222 22 3333222222111 211 123467778888999999999999988754344322
Q ss_pred hH----HHHHH--hcCcCCcHHHHHHHHHH
Q 046354 345 TF----VGVLS--DCSHAGLVEKGRKTFNL 368 (510)
Q Consensus 345 ~~----~~li~--~~~~~g~~~~a~~~~~~ 368 (510)
.+ ...+. .-...|+.+.+.....+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 21 11222 23467788777776655
No 474
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.26 E-value=1.9e+02 Score=22.89 Aligned_cols=75 Identities=5% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTWNAMIDRYARNGP-EGAAMKLLNLMFQSRFMPNETTCTSI 246 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l 246 (510)
.+.++.-....++..-...+++.+.. .+...|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555556666666666655532 456779999998866655 34567888999988899999999999
Q ss_pred HHHhh
Q 046354 247 LTSCE 251 (510)
Q Consensus 247 l~~~~ 251 (510)
+.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 99873
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.77 E-value=72 Score=28.24 Aligned_cols=64 Identities=20% Similarity=0.027 Sum_probs=52.8
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
+=..+.++++++.|....+......| |+..+.--...|.+.|...-|.+-++...+..|+++..
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 44567889999999999998887766 66667777778899999999999999988999988644
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.34 E-value=26 Score=36.22 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=33.0
Q ss_pred HhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...+|+++.|++.-.+.- +..+|..|+.....+|+..-|+-.|++.+
T Consensus 653 aLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 345677777777665543 56677777777777777777777777754
No 477
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=38.13 E-value=3.3e+02 Score=25.22 Aligned_cols=157 Identities=11% Similarity=-0.060 Sum_probs=88.2
Q ss_pred ccccChhhHHHHhcccCC-------C-Chh-hHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCCchhHHHHHHh--
Q 046354 288 GFQLDVNSARLAFERLEA-------K-DVV-SWTAMILAYSNHGHGFQVFRLFARMLKS----GTKPDEITFVGVLSD-- 352 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-------~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~-- 352 (510)
...+++.+|..+...+.. + ..+ .+-.=-.+|....+..+|..-+...+.. =++|-...-.-+..+
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 777778777766654432 1 111 1111123455556666666666555432 134433322222222
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHh---HHhhcCChHHHHHHHhhCC---CCCCcHHHHHHHHHHHHhh
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLAD---ILRRAGQVKEAMRVVSKMP---PHERDHVVLGALLGACRLH 425 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~ 425 (510)
++...|+..|..+|-+..+.|..-.+ +....+|=. +-.-.+..++...++..-. -..|+......+..++.+.
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 34448999999999888874322122 333333322 2234577777776664321 1278888988998888654
Q ss_pred --CCHHHHHHHHHHHHhcCCC
Q 046354 426 --GDVRMADYIGERLIELQPS 444 (510)
Q Consensus 426 --~~~~~A~~~~~~~~~~~p~ 444 (510)
.+++.|..-|+.=+..+|-
T Consensus 299 SLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 299 SLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred cHHHHHHHHHHhHHHHhcChH
Confidence 6888888888876655553
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.80 E-value=2.5e+02 Score=25.45 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=13.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhccc
Q 046354 94 SLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 94 ~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
..++.+...|++..|++++.+..+
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455556666666666655544
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.31 E-value=3.6e+02 Score=25.43 Aligned_cols=89 Identities=9% Similarity=-0.080 Sum_probs=57.3
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACR-LHGDVRMADYIGERLIELQPS-----SSGAYVLSANVH 456 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 456 (510)
.+..+.+.|.+..|.++.+-+...+|+ +......|..|+ +.++++--+++++........ -|..-...+-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 356678889999999998888877774 445555566654 567887777777765542111 123344555556
Q ss_pred HHcCCC---------------hHHHHHHHHHH
Q 046354 457 AARGEW---------------DEFAQVRKKME 473 (510)
Q Consensus 457 ~~~g~~---------------~~A~~~~~~~~ 473 (510)
...++. +.|...+.+..
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHH
Confidence 666666 67777766554
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.03 E-value=2.5e+02 Score=23.76 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+.++..|...||++.|.++|.-++...+-+... |..=+.++.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 45667777777888888888888888666555444 4444455666666666657777775
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.29 E-value=2.7e+02 Score=23.37 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=42.1
Q ss_pred hhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc------CChhhHHHHHH-HHHcCC--ChHHHHHHH
Q 046354 42 PKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE------GNVYSWTSLIS-GYFKAR--QVDEGRRLF 112 (510)
Q Consensus 42 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g--~~~~A~~~~ 112 (510)
++++++..++.. ++..+-.....|++++|.+-++++.+ .-...|..+.. +++..+ .+-+|.-++
T Consensus 20 EE~l~lsRei~r-------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 20 EEALKLSREIVR-------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHH
Confidence 345555544444 55555566777888888888887733 23345555555 455544 355677777
Q ss_pred Hhcccc
Q 046354 113 DRMPLK 118 (510)
Q Consensus 113 ~~m~~~ 118 (510)
..+...
T Consensus 93 ~~l~~~ 98 (204)
T COG2178 93 SILKDG 98 (204)
T ss_pred HHHhcC
Confidence 666654
No 482
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.80 E-value=1.1e+02 Score=21.79 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChH
Q 046354 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (510)
++.+-...-.......+.+++.++++.++...+.+|..+..++...+...
T Consensus 33 gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 33 DILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 33333333344445567788888888888888888888888886655433
No 483
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=34.75 E-value=2.6e+02 Score=25.89 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=53.1
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCC-----CC-cHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchh------HH
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPH-----ER-DHVVLGALLGACRLH-GDVRMADYIGERLIELQPSSSGA------YV 450 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~p-~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~------~~ 450 (510)
.+.+.|.+.|+.++-..++...... ++ .......++..+... +..+.-..+..++++.....-.+ -.
T Consensus 53 el~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 53 ELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555666655555544433211 11 223444555554432 33344455555555333222222 34
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 451 LSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.++.+|...+++.+|+.+...+.+..++..
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 577889999999999999988886555544
No 484
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.42 E-value=61 Score=17.85 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=10.3
Q ss_pred hhhHHHHHHhccccCCChhHHH
Q 046354 41 LPKAEALFRAMPESQRNIVAES 62 (510)
Q Consensus 41 ~~~A~~~~~~~~~~~p~~~~~~ 62 (510)
++.|..+|+......|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHH
Confidence 3445555555444444444443
No 485
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.63 E-value=2.7e+02 Score=22.96 Aligned_cols=56 Identities=7% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
+..++..-.+..+...++.++++...- ...-.-+.-|...|+++.+...|.++...
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 333444344444455555555554431 12223455566778888888887777654
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.22 E-value=1.8e+02 Score=29.52 Aligned_cols=70 Identities=14% Similarity=0.347 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHhccccCC----ChhHHHHHHHHHHhcCChh------hHHHHHHhh-ccCChhhHHHHHH
Q 046354 29 ASMITVFLRNHDLPKAEALFRAMPESQR----NIVAESAMIDGYVKAGRVD------EARKVFDEI-YEGNVYSWTSLIS 97 (510)
Q Consensus 29 ~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~------~A~~~~~~~-~~~~~~~~~~li~ 97 (510)
.+|..+|..+|++..+.++++....... =...||..|+...+.|.++ .|.+.++.. ..-|..||..|+.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 3788999999999999999988876522 2456777788888888764 233333332 2245556655554
Q ss_pred H
Q 046354 98 G 98 (510)
Q Consensus 98 ~ 98 (510)
+
T Consensus 112 ~ 112 (1117)
T COG5108 112 A 112 (1117)
T ss_pred h
Confidence 3
No 487
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=5.5e+02 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHhcCChhhHHHHHHhcccc
Q 046354 34 VFLRNHDLPKAEALFRAMPES 54 (510)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~~~~ 54 (510)
+|...|+..+|++.|.+....
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhc
Confidence 356677888888888776543
No 488
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.45 E-value=1.8e+02 Score=20.82 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHH
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGC 132 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~ 132 (510)
.+++.+.+.++.+-...-.........+++.++++.+.. .+..+|..+..++
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL 75 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPK--RGPRAFSAFCEAL 75 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHH--hChhHHHHHHHHH
Confidence 344555555555555444444455556666666666655 3444444444444
No 489
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.94 E-value=2.1e+02 Score=21.17 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcC--ChhhHHHHHHhhccCChhhHHHHHHHHH
Q 046354 29 ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAG--RVDEARKVFDEIYEGNVYSWTSLISGYF 100 (510)
Q Consensus 29 ~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~~ 100 (510)
..++.-|...+++++|...+.++....-.......++..+...+ .-+....++..+.+.+..+-+.+..++.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~ 79 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFW 79 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 44666778889999999998887652223344445566555553 2334445556665556655555555553
No 490
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.81 E-value=1.6e+02 Score=23.37 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=7.7
Q ss_pred CCcHHHHHHHHHHHHHh
Q 046354 356 AGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~ 372 (510)
.++.-.|.++++.+.+.
T Consensus 33 ~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 33 ADGHLSAEELYEELREE 49 (145)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 33334445555555443
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.97 E-value=2e+02 Score=22.75 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 357 (510)
-..++..+...+++-.|..+++++.+.+.+.+..|....+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44567777777777889999999988776665555544445544444
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.96 E-value=1.9e+02 Score=23.66 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=21.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 357 (510)
++..+...+++-.|.++++.+.+.+..++..|..-.+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344444445556666666665554444444434444444333
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=30.77 E-value=2.5e+02 Score=21.71 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=27.3
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
+...-+.+.|.++|+++++..|++-..+..++..+..
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3344567999999999999999998888888777654
No 494
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.46 E-value=4.4e+02 Score=24.33 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCchhHHHHHHh-cCcCCcHHHHHHHHHHHHHhhCCCCCc----c
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLK----SGTKPDEITFVGVLSD-CSHAGLVEKGRKTFNLMSRAYGFKPRA----E 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~----~ 380 (510)
.+-....-|++.|+-+.|++.+++..+ .|.+.|..-+..-+.. |....-+.+-++..+.+.++ |-..+. .
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRlK 184 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhHH
Confidence 455566778888888888877765543 4667776655444333 33333445555555555555 655543 2
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
+|..+- +....++.+|..+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 333221 234567788877775544
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.38 E-value=2e+02 Score=20.36 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
++|+-.... |+..|+.+|..+++.+.-.=-.+...++++.|
T Consensus 29 EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444333 55555555555544443333334444444433
No 496
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.37 E-value=38 Score=26.19 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=25.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 249 (510)
.-+.|.-..|..+|++|++.|-+||. ++.++.+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 44566777899999999999999985 4455543
No 497
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.99 E-value=1e+02 Score=22.86 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
.||+..|++.+.+..+..+.++-.|..-+.+-...|
T Consensus 72 ~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 477777777777776655554444554444444444
No 498
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=29.96 E-value=1.9e+02 Score=20.52 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHH
Q 046354 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 224 (510)
+++.+.+.++.+....=..-.+..+.++|..+++.+..+...+|..+.+++-..|..+-|
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 333333344444444434445666788888888888888888888888877766554444
No 499
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.74 E-value=2.2e+02 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCCHHHH
Q 046354 414 VLGALLGACRLHGDVRMA 431 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A 431 (510)
.|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666655443
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.61 E-value=1.2e+02 Score=22.74 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV 359 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 359 (510)
++..+...+.+-.|.++++.+.+.+..++..|....+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555666777888888888777666666665556666655543
Done!