Query 046354
Match_columns 510
No_of_seqs 494 out of 2619
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 19:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-40 1.4E-44 331.5 32.9 456 5-477 64-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-38 4.3E-43 320.7 27.7 448 2-457 92-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4E-29 1.4E-33 237.3 33.2 369 32-461 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-27 1.1E-31 224.1 29.7 350 64-474 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 9.2E-28 3.1E-32 231.7 15.3 204 193-425 9-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.8E-27 9.5E-32 228.3 15.4 181 174-392 26-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 8.5E-25 2.9E-29 215.6 31.7 409 25-475 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 9.5E-24 3.2E-28 204.5 31.0 385 12-466 10-445 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-24 3.9E-29 214.7 24.4 411 3-452 15-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.6E-23 5.3E-28 207.8 28.8 406 24-474 24-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.7E-23 1.6E-27 199.6 27.8 337 43-473 10-407 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.2E-21 7.4E-26 192.4 21.3 384 57-475 24-457 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.6E-20 2.6E-24 171.2 28.1 322 24-459 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.9E-20 1.3E-24 173.1 24.1 304 142-474 2-334 (359)
15 3hym_B Cell division cycle pro 99.8 4.7E-19 1.6E-23 163.8 20.2 270 148-456 27-314 (330)
16 2ooe_A Cleavage stimulation fa 99.8 4E-17 1.4E-21 161.1 34.7 401 22-478 10-495 (530)
17 3hym_B Cell division cycle pro 99.8 9.9E-19 3.4E-23 161.6 20.9 262 171-473 19-297 (330)
18 3mkr_A Coatomer subunit epsilo 99.8 9.3E-18 3.2E-22 151.3 26.6 271 151-467 7-286 (291)
19 2xm6_A Protein corresponding t 99.8 6E-17 2.1E-21 158.2 31.6 378 14-458 27-452 (490)
20 1fch_A Peroxisomal targeting s 99.8 4.6E-19 1.6E-23 166.6 15.8 280 154-473 36-357 (368)
21 1b89_A Protein (clathrin heavy 99.8 2E-17 6.9E-22 152.3 26.1 342 4-406 13-370 (449)
22 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.3E-22 153.6 18.9 348 37-473 15-383 (449)
23 4g1t_A Interferon-induced prot 99.8 6.4E-17 2.2E-21 157.4 24.4 363 57-485 50-470 (472)
24 4eqf_A PEX5-related protein; a 99.8 2.6E-18 8.9E-23 161.3 13.9 159 311-471 180-352 (365)
25 4eqf_A PEX5-related protein; a 99.8 9.2E-18 3.1E-22 157.6 17.2 185 288-474 110-309 (365)
26 1xi4_A Clathrin heavy chain; a 99.8 6.3E-15 2.1E-19 151.3 38.7 381 24-467 984-1376(1630)
27 2ooe_A Cleavage stimulation fa 99.8 8.6E-16 2.9E-20 151.6 31.9 381 48-475 2-454 (530)
28 2xm6_A Protein corresponding t 99.8 1.8E-15 6E-20 147.8 33.7 361 44-473 26-430 (490)
29 1fch_A Peroxisomal targeting s 99.8 1.9E-17 6.5E-22 155.5 18.8 252 183-474 34-313 (368)
30 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.6E-20 155.0 33.7 396 2-470 993-1440(1630)
31 3cv0_A Peroxisome targeting si 99.8 2.8E-18 9.6E-23 158.3 11.7 271 144-473 22-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.4E-16 4.9E-21 143.5 20.7 250 181-480 6-269 (291)
33 4g1t_A Interferon-induced prot 99.7 8E-17 2.7E-21 156.8 19.3 380 24-453 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.1E-16 3.9E-21 147.5 15.6 261 121-443 20-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.8E-22 164.9 5.3 146 174-393 127-286 (1134)
36 2pl2_A Hypothetical conserved 99.7 6.5E-16 2.2E-20 133.1 13.1 197 269-473 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 2.7E-15 9.3E-20 133.0 16.8 226 175-473 6-234 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-16 5.1E-21 158.2 8.6 132 205-405 127-262 (1134)
39 3uq3_A Heat shock protein STI1 99.6 9.6E-15 3.3E-19 129.5 15.6 232 143-454 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.9E-15 3.4E-19 130.8 15.6 174 288-469 88-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.1E-14 7E-19 128.6 15.9 150 308-460 108-269 (272)
42 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.7E-18 129.0 20.2 245 142-459 96-366 (382)
43 2ho1_A Type 4 fimbrial biogene 99.6 3.1E-14 1.1E-18 125.8 15.5 201 272-479 37-242 (252)
44 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.5E-19 126.4 14.0 196 271-474 22-221 (243)
45 3vtx_A MAMA; tetratricopeptide 99.6 6E-14 2.1E-18 117.4 15.6 166 307-475 4-170 (184)
46 2vq2_A PILW, putative fimbrial 99.6 4.7E-14 1.6E-18 122.1 15.4 201 271-478 7-214 (225)
47 2pl2_A Hypothetical conserved 99.6 6.2E-14 2.1E-18 120.6 15.2 196 171-439 2-212 (217)
48 1ouv_A Conserved hypothetical 99.6 1E-12 3.4E-17 117.6 23.6 220 173-473 5-249 (273)
49 3u4t_A TPR repeat-containing p 99.6 9.4E-14 3.2E-18 124.2 16.7 187 288-477 48-252 (272)
50 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-14 5.7E-19 126.7 11.3 170 288-460 68-241 (243)
51 3e4b_A ALGK; tetratricopeptide 99.6 2.2E-13 7.4E-18 131.0 19.6 378 31-473 9-419 (452)
52 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6E-18 120.9 17.5 206 205-450 37-247 (252)
53 2h6f_A Protein farnesyltransfe 99.5 4.9E-14 1.7E-18 131.3 14.0 226 205-472 97-344 (382)
54 1ouv_A Conserved hypothetical 99.5 9.4E-13 3.2E-17 117.8 21.1 225 143-446 6-256 (273)
55 4a1s_A PINS, partner of inscut 99.5 9.4E-14 3.2E-18 132.4 14.3 268 143-473 48-370 (411)
56 3sf4_A G-protein-signaling mod 99.5 1.1E-13 3.6E-18 131.7 14.3 226 174-464 87-365 (406)
57 2vq2_A PILW, putative fimbrial 99.5 6.8E-13 2.3E-17 114.7 17.6 208 205-452 8-222 (225)
58 3ro2_A PINS homolog, G-protein 99.5 1.4E-13 4.7E-18 127.0 13.7 265 145-473 7-330 (338)
59 3e4b_A ALGK; tetratricopeptide 99.5 9.3E-13 3.2E-17 126.5 19.3 309 149-473 9-349 (452)
60 3sf4_A G-protein-signaling mod 99.5 2E-13 6.8E-18 129.8 14.5 265 145-473 11-334 (406)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.3E-18 121.7 13.4 226 3-252 14-261 (275)
62 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.2E-18 131.9 13.3 194 271-473 101-319 (474)
63 4e6h_A MRNA 3'-END-processing 99.5 6E-11 2.1E-15 117.9 28.6 96 22-117 63-175 (679)
64 4gyw_A UDP-N-acetylglucosamine 99.4 1.4E-12 4.8E-17 131.1 15.9 162 307-473 8-172 (723)
65 3vtx_A MAMA; tetratricopeptide 99.4 6.3E-13 2.2E-17 111.1 10.9 169 270-446 3-175 (184)
66 4e6h_A MRNA 3'-END-processing 99.4 1.3E-10 4.3E-15 115.6 29.0 395 5-448 77-577 (679)
67 4a1s_A PINS, partner of inscut 99.4 1.7E-12 5.9E-17 123.6 14.7 205 175-444 127-375 (411)
68 2ond_A Cleavage stimulation fa 99.4 9E-12 3.1E-16 113.4 18.5 183 294-480 81-275 (308)
69 3ro2_A PINS homolog, G-protein 99.4 1.9E-12 6.4E-17 119.4 14.1 206 174-444 83-335 (338)
70 2ond_A Cleavage stimulation fa 99.4 3.1E-11 1.1E-15 109.9 21.9 217 160-448 33-277 (308)
71 3as5_A MAMA; tetratricopeptide 99.4 2.4E-12 8E-17 107.5 13.3 163 309-474 9-172 (186)
72 3ulq_A Response regulator aspa 99.4 1.1E-11 3.8E-16 116.7 19.3 294 35-439 22-366 (383)
73 3ulq_A Response regulator aspa 99.4 6.1E-11 2.1E-15 111.7 21.6 286 5-336 23-367 (383)
74 3q15_A PSP28, response regulat 99.4 1.5E-10 5.2E-15 108.7 23.2 201 176-439 143-363 (378)
75 4i17_A Hypothetical protein; T 99.4 6.4E-12 2.2E-16 109.0 12.6 166 307-474 6-208 (228)
76 1hz4_A MALT regulatory protein 99.3 4.7E-10 1.6E-14 105.2 26.0 264 148-473 19-320 (373)
77 4abn_A Tetratricopeptide repea 99.3 3.6E-12 1.2E-16 123.3 11.6 179 292-474 83-286 (474)
78 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.4E-16 111.9 14.2 240 204-473 26-305 (311)
79 4i17_A Hypothetical protein; T 99.3 4.6E-11 1.6E-15 103.5 14.4 178 271-456 6-224 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 3.6E-11 1.2E-15 100.2 13.2 166 275-448 11-180 (186)
81 3nf1_A KLC 1, kinesin light ch 99.3 1E-11 3.5E-16 113.2 10.1 242 142-444 26-310 (311)
82 3q15_A PSP28, response regulat 99.3 3E-11 1E-15 113.6 12.8 233 178-473 105-363 (378)
83 3edt_B KLC 2, kinesin light ch 99.2 3.1E-11 1.1E-15 108.2 9.2 186 288-473 12-279 (283)
84 3mv2_B Coatomer subunit epsilo 99.2 1.5E-09 5.1E-14 95.9 19.4 168 308-480 100-287 (310)
85 3qky_A Outer membrane assembly 99.2 2.8E-10 9.5E-15 100.8 13.1 169 308-478 15-227 (261)
86 4ga2_A E3 SUMO-protein ligase 99.2 5.6E-11 1.9E-15 95.3 7.2 119 352-473 6-127 (150)
87 4ga2_A E3 SUMO-protein ligase 99.1 1.6E-11 5.4E-16 98.5 3.8 141 317-461 6-149 (150)
88 1hz4_A MALT regulatory protein 99.1 1.3E-08 4.6E-13 95.2 24.0 230 149-443 59-324 (373)
89 3qky_A Outer membrane assembly 99.1 3.7E-10 1.3E-14 100.1 11.9 187 271-464 14-250 (261)
90 3qou_A Protein YBBN; thioredox 99.1 7.2E-10 2.5E-14 99.5 13.9 178 292-473 101-282 (287)
91 4gyw_A UDP-N-acetylglucosamine 99.1 9.9E-11 3.4E-15 117.8 9.0 165 269-443 6-176 (723)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.6E-09 8.8E-14 92.2 16.6 163 311-475 7-213 (225)
93 2fo7_A Synthetic consensus TPR 99.1 8.5E-10 2.9E-14 86.3 11.8 92 382-473 38-130 (136)
94 1qqe_A Vesicular transport pro 99.1 1.2E-09 4.2E-14 98.3 14.3 208 181-451 44-279 (292)
95 2fo7_A Synthetic consensus TPR 99.1 5.6E-10 1.9E-14 87.3 10.6 134 309-445 2-136 (136)
96 2pzi_A Probable serine/threoni 99.1 1.7E-10 5.7E-15 116.7 8.1 170 288-461 402-583 (681)
97 2r5s_A Uncharacterized protein 99.1 5.4E-10 1.8E-14 92.3 9.7 159 311-473 9-171 (176)
98 3gyz_A Chaperone protein IPGC; 99.1 4.3E-10 1.5E-14 89.6 8.3 97 378-474 35-132 (151)
99 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.8E-13 87.2 17.6 169 296-473 5-195 (212)
100 1qqe_A Vesicular transport pro 99.0 1.6E-09 5.4E-14 97.6 12.2 177 292-482 32-232 (292)
101 2uy1_A Cleavage stimulation fa 99.0 2.1E-07 7.2E-12 89.8 27.2 376 7-439 7-411 (493)
102 3edt_B KLC 2, kinesin light ch 99.0 1.1E-08 3.8E-13 91.3 16.8 207 174-441 43-281 (283)
103 3mv2_B Coatomer subunit epsilo 99.0 8.9E-09 3E-13 91.0 15.3 154 288-448 111-289 (310)
104 2vsy_A XCC0866; transferase, g 99.0 2.1E-09 7E-14 106.9 12.4 161 290-453 2-169 (568)
105 2vgx_A Chaperone SYCD; alterna 99.0 5.3E-10 1.8E-14 89.2 6.3 105 378-482 20-125 (148)
106 2vsy_A XCC0866; transferase, g 99.0 4.1E-09 1.4E-13 104.7 12.7 150 321-473 2-155 (568)
107 4gco_A Protein STI-1; structur 98.9 3.5E-09 1.2E-13 81.7 9.1 92 382-473 16-108 (126)
108 2pzi_A Probable serine/threoni 98.9 1.5E-09 5.2E-14 109.7 8.5 151 319-473 402-561 (681)
109 4gco_A Protein STI-1; structur 98.9 3.8E-09 1.3E-13 81.5 8.8 109 345-455 15-124 (126)
110 2ifu_A Gamma-SNAP; membrane fu 98.9 1.5E-08 5.2E-13 91.9 13.0 156 310-468 78-254 (307)
111 3urz_A Uncharacterized protein 98.9 8E-09 2.7E-13 87.8 10.1 155 288-445 15-190 (208)
112 3u3w_A Transcriptional activat 98.9 9.4E-08 3.2E-12 86.0 17.7 161 313-473 80-264 (293)
113 3urz_A Uncharacterized protein 98.9 2.6E-08 8.8E-13 84.6 13.1 96 26-121 5-120 (208)
114 2xcb_A PCRH, regulatory protei 98.9 7.3E-09 2.5E-13 82.0 9.0 102 379-480 18-120 (142)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 6.4E-09 2.2E-13 94.4 9.4 172 290-473 29-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.8E-08 6.2E-13 85.9 11.6 121 348-473 11-148 (213)
117 2uy1_A Cleavage stimulation fa 98.9 1E-07 3.6E-12 92.0 18.0 121 346-473 289-411 (493)
118 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-07 3.7E-12 85.6 17.0 163 310-473 77-264 (293)
119 1a17_A Serine/threonine protei 98.8 1.6E-08 5.5E-13 82.3 10.0 126 346-473 16-144 (166)
120 2e2e_A Formate-dependent nitri 98.8 6.4E-09 2.2E-13 85.9 7.6 127 318-447 20-150 (177)
121 3qou_A Protein YBBN; thioredox 98.8 2.7E-08 9.2E-13 89.2 12.1 133 340-474 114-247 (287)
122 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.1E-08 1.1E-12 85.3 12.1 156 288-448 15-220 (225)
123 2r5s_A Uncharacterized protein 98.8 5.1E-08 1.8E-12 80.3 12.7 153 27-199 8-169 (176)
124 2lni_A Stress-induced-phosphop 98.8 2E-08 6.9E-13 78.1 9.3 114 346-461 19-133 (133)
125 2vyi_A SGTA protein; chaperone 98.8 2.3E-08 7.8E-13 77.5 9.5 118 344-463 13-131 (131)
126 1na0_A Designed protein CTPR3; 98.8 3.1E-08 1.1E-12 76.0 9.9 115 344-460 10-125 (125)
127 3dra_A Protein farnesyltransfe 98.8 1E-07 3.5E-12 85.1 14.3 184 292-478 84-290 (306)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.7E-08 3E-12 81.6 13.2 127 314-446 12-155 (213)
129 2kck_A TPR repeat; tetratricop 98.8 3.4E-08 1.2E-12 74.1 9.5 97 378-474 5-105 (112)
130 1p5q_A FKBP52, FK506-binding p 98.8 2.2E-08 7.6E-13 91.9 9.8 163 289-473 125-292 (336)
131 3upv_A Heat shock protein STI1 98.8 1.4E-08 4.9E-13 78.3 7.3 94 380-473 5-99 (126)
132 1hxi_A PEX5, peroxisome target 98.7 1.9E-08 6.5E-13 76.9 7.2 93 381-473 19-112 (121)
133 3sz7_A HSC70 cochaperone (SGT) 98.7 4.1E-08 1.4E-12 79.8 8.8 109 343-453 11-120 (164)
134 2vgx_A Chaperone SYCD; alterna 98.7 9E-09 3.1E-13 82.0 4.4 105 344-450 22-127 (148)
135 3gyz_A Chaperone protein IPGC; 98.7 3.8E-08 1.3E-12 78.2 7.8 101 344-446 37-138 (151)
136 3q49_B STIP1 homology and U bo 98.7 8.4E-08 2.9E-12 75.1 9.4 97 377-473 7-104 (137)
137 3dra_A Protein farnesyltransfe 98.7 5.3E-06 1.8E-10 74.0 22.0 160 292-454 125-301 (306)
138 2lni_A Stress-induced-phosphop 98.7 1.3E-07 4.4E-12 73.5 10.4 97 378-474 15-112 (133)
139 3rjv_A Putative SEL1 repeat pr 98.7 4.3E-07 1.5E-11 77.2 14.3 127 310-443 52-199 (212)
140 2e2e_A Formate-dependent nitri 98.7 7.5E-08 2.6E-12 79.3 9.2 124 352-477 19-146 (177)
141 4gcn_A Protein STI-1; structur 98.7 5.4E-08 1.9E-12 75.1 7.4 93 381-473 10-110 (127)
142 2c2l_A CHIP, carboxy terminus 98.6 3.7E-08 1.3E-12 87.9 6.1 187 274-473 6-197 (281)
143 2xev_A YBGF; tetratricopeptide 98.6 1.3E-07 4.4E-12 73.1 8.4 89 385-473 8-103 (129)
144 1elw_A TPR1-domain of HOP; HOP 98.6 1.3E-07 4.4E-12 71.6 8.2 91 383-473 8-99 (118)
145 2dba_A Smooth muscle cell asso 98.6 2.9E-07 9.8E-12 73.0 10.6 95 379-473 28-126 (148)
146 3upv_A Heat shock protein STI1 98.6 9.8E-08 3.3E-12 73.6 7.5 111 345-457 6-123 (126)
147 1na0_A Designed protein CTPR3; 98.6 2.1E-07 7.2E-12 71.2 9.3 96 379-474 9-105 (125)
148 1elw_A TPR1-domain of HOP; HOP 98.6 1.7E-07 5.9E-12 70.9 8.7 110 345-456 6-116 (118)
149 2xcb_A PCRH, regulatory protei 98.6 7.7E-08 2.6E-12 76.0 6.5 106 345-452 20-126 (142)
150 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-07 5.5E-12 78.9 8.8 165 288-473 15-184 (198)
151 3k9i_A BH0479 protein; putativ 98.6 5.6E-08 1.9E-12 73.8 5.2 83 392-474 3-89 (117)
152 2hr2_A Hypothetical protein; a 98.6 1.6E-07 5.6E-12 73.7 7.8 90 385-474 17-130 (159)
153 3sz7_A HSC70 cochaperone (SGT) 98.6 1.8E-07 6.1E-12 75.9 8.3 96 379-474 11-107 (164)
154 1a17_A Serine/threonine protei 98.6 5.6E-07 1.9E-11 72.9 11.1 129 309-440 14-145 (166)
155 4f3v_A ESX-1 secretion system 98.5 8.9E-08 3E-12 83.5 6.3 181 289-474 18-236 (282)
156 2dba_A Smooth muscle cell asso 98.5 4.9E-07 1.7E-11 71.6 10.2 110 345-457 30-144 (148)
157 1wao_1 Serine/threonine protei 98.5 6.6E-08 2.2E-12 93.2 5.7 123 346-470 9-134 (477)
158 3gw4_A Uncharacterized protein 98.5 5.1E-07 1.8E-11 76.0 10.5 129 345-473 28-174 (203)
159 2vyi_A SGTA protein; chaperone 98.5 3.4E-07 1.1E-11 70.7 8.4 97 378-474 11-108 (131)
160 2c2l_A CHIP, carboxy terminus 98.5 6.3E-07 2.1E-11 79.9 11.2 188 24-234 3-199 (281)
161 3rkv_A Putative peptidylprolyl 98.5 2.8E-07 9.7E-12 74.6 7.7 61 413-473 64-124 (162)
162 1p5q_A FKBP52, FK506-binding p 98.5 1.4E-07 4.8E-12 86.5 6.5 142 272-439 147-292 (336)
163 3q49_B STIP1 homology and U bo 98.5 3.1E-07 1E-11 71.8 7.1 102 341-444 7-109 (137)
164 2qfc_A PLCR protein; TPR, HTH, 98.5 4.2E-06 1.4E-10 75.1 15.4 127 314-440 121-265 (293)
165 2kck_A TPR repeat; tetratricop 98.5 6.3E-07 2.2E-11 67.0 8.3 102 343-446 6-111 (112)
166 4f3v_A ESX-1 secretion system 98.4 1.7E-05 5.8E-10 69.1 17.2 180 37-239 18-240 (282)
167 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.3E-11 73.0 10.6 155 288-442 3-177 (203)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 8.2E-07 2.8E-11 85.2 9.8 162 290-473 247-413 (457)
169 1hxi_A PEX5, peroxisome target 98.4 3.9E-07 1.3E-11 69.5 6.1 99 346-446 20-119 (121)
170 1elr_A TPR2A-domain of HOP; HO 98.4 5E-07 1.7E-11 69.8 6.7 109 347-458 8-124 (131)
171 2xev_A YBGF; tetratricopeptide 98.4 2.4E-06 8.2E-11 65.8 10.6 105 349-455 8-119 (129)
172 3k9i_A BH0479 protein; putativ 98.4 1.7E-07 5.7E-12 71.2 3.6 94 355-449 2-98 (117)
173 2fbn_A 70 kDa peptidylprolyl i 98.4 3.5E-07 1.2E-11 76.8 5.8 91 274-370 40-149 (198)
174 3q7a_A Farnesyltransferase alp 98.4 2.6E-06 8.9E-11 76.9 11.6 231 208-479 57-335 (349)
175 1elr_A TPR2A-domain of HOP; HO 98.4 6.2E-07 2.1E-11 69.2 6.7 95 380-474 5-107 (131)
176 3q7a_A Farnesyltransferase alp 98.4 6.4E-05 2.2E-09 67.8 20.4 230 184-454 64-345 (349)
177 3u3w_A Transcriptional activat 98.4 1.3E-06 4.4E-11 78.5 9.2 153 288-440 86-265 (293)
178 4gcn_A Protein STI-1; structur 98.3 3.3E-06 1.1E-10 64.9 10.2 101 26-126 9-120 (127)
179 2if4_A ATFKBP42; FKBP-like, al 98.3 6.7E-07 2.3E-11 82.1 6.8 145 309-473 180-326 (338)
180 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.9E-11 84.5 8.7 113 288-403 17-134 (477)
181 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-06 4E-11 81.4 8.2 138 310-468 225-363 (370)
182 2l6j_A TPR repeat-containing p 98.3 2.5E-07 8.4E-12 69.3 2.5 93 378-470 3-102 (111)
183 3rkv_A Putative peptidylprolyl 98.3 6E-07 2.1E-11 72.6 4.9 130 309-457 12-143 (162)
184 3ro3_A PINS homolog, G-protein 98.3 1.3E-06 4.3E-11 70.3 6.8 93 381-473 51-156 (164)
185 2kat_A Uncharacterized protein 98.2 3.4E-06 1.1E-10 63.5 7.6 76 398-473 4-80 (115)
186 4b4t_Q 26S proteasome regulato 98.2 3.5E-06 1.2E-10 80.3 9.4 165 310-474 57-244 (434)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 2.2E-06 7.6E-11 78.5 7.2 153 272-446 179-333 (338)
188 3n71_A Histone lysine methyltr 98.2 2.7E-06 9.2E-11 81.4 7.8 121 353-473 319-462 (490)
189 4b4t_Q 26S proteasome regulato 98.2 1.3E-05 4.5E-10 76.3 12.7 188 32-233 11-244 (434)
190 1na3_A Designed protein CTPR2; 98.2 4.9E-06 1.7E-10 59.3 7.3 82 379-460 9-91 (91)
191 3ma5_A Tetratricopeptide repea 98.1 1.1E-05 3.8E-10 58.8 8.7 63 411-473 6-68 (100)
192 3dss_A Geranylgeranyl transfer 98.1 7.1E-05 2.4E-09 67.2 15.5 178 293-473 90-302 (331)
193 2hr2_A Hypothetical protein; a 98.1 1.8E-06 6.2E-11 67.8 4.5 117 310-452 13-142 (159)
194 1zu2_A Mitochondrial import re 98.1 1E-06 3.5E-11 69.0 2.8 87 357-445 16-124 (158)
195 1dce_A Protein (RAB geranylger 98.1 5.9E-05 2E-09 74.0 15.3 171 291-464 43-244 (567)
196 1ihg_A Cyclophilin 40; ppiase 98.1 7.7E-06 2.6E-10 75.8 7.9 93 382-474 226-335 (370)
197 3ro3_A PINS homolog, G-protein 98.1 8.4E-06 2.9E-10 65.4 7.3 135 309-443 10-160 (164)
198 3dss_A Geranylgeranyl transfer 98.1 7.8E-05 2.7E-09 66.9 14.0 231 184-456 39-319 (331)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-06 2.7E-10 78.3 8.0 115 357-474 248-379 (457)
200 1zu2_A Mitochondrial import re 97.9 9E-06 3.1E-10 63.7 4.3 87 388-474 11-119 (158)
201 3lvg_A Clathrin heavy chain 1; 97.9 1.2E-05 4.2E-10 73.7 5.7 215 6-226 66-325 (624)
202 2kat_A Uncharacterized protein 97.9 1.8E-05 6.3E-10 59.4 5.4 83 361-445 3-86 (115)
203 1klx_A Cysteine rich protein B 97.8 0.00012 4.1E-09 56.9 9.3 108 357-473 9-124 (138)
204 2l6j_A TPR repeat-containing p 97.8 8.3E-05 2.8E-09 55.1 8.1 65 410-474 2-66 (111)
205 3bee_A Putative YFRE protein; 97.7 0.00017 5.8E-09 51.4 8.2 65 410-474 4-71 (93)
206 1dce_A Protein (RAB geranylger 97.7 0.00021 7E-09 70.2 11.6 150 320-473 40-219 (567)
207 1na3_A Designed protein CTPR2; 97.7 0.00014 4.9E-09 51.4 8.0 64 411-474 8-71 (91)
208 3ma5_A Tetratricopeptide repea 97.7 3.5E-05 1.2E-09 56.1 4.1 68 377-444 5-73 (100)
209 2kc7_A BFR218_protein; tetratr 97.6 0.00022 7.4E-09 51.6 7.9 78 385-470 6-85 (99)
210 3n71_A Histone lysine methyltr 97.6 0.00011 3.7E-09 70.3 7.8 88 387-474 317-421 (490)
211 3qww_A SET and MYND domain-con 97.6 0.00012 4.2E-09 68.8 7.1 84 391-474 310-410 (433)
212 3qwp_A SET and MYND domain-con 97.5 0.00035 1.2E-08 65.8 9.1 89 386-474 294-399 (429)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00044 1.5E-08 49.9 7.5 60 418-477 6-66 (99)
214 1klx_A Cysteine rich protein B 97.4 0.0015 5.2E-08 50.6 10.9 111 322-442 9-127 (138)
215 3ly7_A Transcriptional activat 97.3 0.0042 1.5E-07 56.0 13.9 73 411-484 276-348 (372)
216 3qww_A SET and MYND domain-con 97.2 0.00057 1.9E-08 64.2 7.0 95 355-449 310-424 (433)
217 3ly7_A Transcriptional activat 97.2 0.0025 8.6E-08 57.5 10.3 139 306-446 192-344 (372)
218 1pc2_A Mitochondria fission pr 97.1 0.00058 2E-08 52.8 5.3 92 356-449 11-108 (152)
219 3bee_A Putative YFRE protein; 97.1 0.002 6.7E-08 45.7 7.2 70 376-445 3-76 (93)
220 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0029 9.8E-08 46.1 7.4 73 380-452 6-86 (104)
221 3mkq_A Coatomer beta'-subunit; 96.9 0.032 1.1E-06 57.7 17.9 97 7-117 612-709 (814)
222 3qwp_A SET and MYND domain-con 96.9 0.0012 4.2E-08 62.1 6.5 101 350-450 294-414 (429)
223 3u64_A Protein TP_0956; tetrat 96.9 0.002 6.9E-08 55.6 7.0 79 395-473 179-267 (301)
224 3mkq_A Coatomer beta'-subunit; 96.7 0.062 2.1E-06 55.5 18.4 45 155-201 664-708 (814)
225 3lvg_A Clathrin heavy chain 1; 96.7 0.0015 5.2E-08 60.3 5.3 331 57-465 53-429 (624)
226 3mkq_B Coatomer subunit alpha; 96.4 0.17 5.7E-06 40.2 14.4 101 6-117 17-117 (177)
227 1nzn_A CGI-135 protein, fissio 96.4 0.041 1.4E-06 40.9 10.2 91 359-451 17-113 (126)
228 1wy6_A Hypothetical protein ST 96.4 0.15 5.1E-06 38.0 12.7 141 318-478 17-158 (172)
229 1pc2_A Mitochondria fission pr 96.3 0.006 2.1E-07 47.2 5.5 80 395-474 14-99 (152)
230 1qsa_A Protein (soluble lytic 96.3 0.99 3.4E-05 44.3 26.0 115 322-440 228-347 (618)
231 2v5f_A Prolyl 4-hydroxylase su 96.2 0.022 7.7E-07 41.2 7.8 65 411-475 4-75 (104)
232 3u64_A Protein TP_0956; tetrat 95.4 0.022 7.5E-07 49.2 5.7 83 359-444 179-272 (301)
233 3mkq_B Coatomer subunit alpha; 95.3 0.83 2.8E-05 36.3 15.9 129 65-231 12-141 (177)
234 4h7y_A Dual specificity protei 95.0 0.23 7.8E-06 37.9 9.3 61 393-453 74-135 (161)
235 4b4t_P 26S proteasome regulato 94.9 1.7 5.7E-05 41.0 17.6 185 38-233 29-246 (445)
236 4h7y_A Dual specificity protei 94.7 0.072 2.5E-06 40.6 6.0 48 426-473 74-121 (161)
237 1qsa_A Protein (soluble lytic 94.6 3.8 0.00013 40.2 32.1 378 6-473 18-408 (618)
238 3ltm_A Alpha-REP4; protein eng 94.3 1.9 6.4E-05 35.6 18.6 185 9-219 17-202 (211)
239 1wy6_A Hypothetical protein ST 94.0 1.4 4.8E-05 32.9 13.2 136 69-237 18-157 (172)
240 4gns_B Protein CSD3, chitin bi 93.7 0.24 8.1E-06 49.6 9.2 55 419-473 344-398 (754)
241 3ltm_A Alpha-REP4; protein eng 93.2 3.1 0.00011 34.2 18.3 185 39-252 16-200 (211)
242 1y8m_A FIS1; mitochondria, unk 92.8 0.59 2E-05 35.3 7.9 73 376-448 36-113 (144)
243 3ltj_A Alpharep-4; protein eng 92.3 3.8 0.00013 33.3 20.9 93 12-106 15-107 (201)
244 3o48_A Mitochondria fission 1 92.2 0.82 2.8E-05 34.1 8.0 74 376-449 37-115 (134)
245 4fhn_B Nucleoporin NUP120; pro 92.2 4.7 0.00016 43.3 17.2 57 61-118 815-871 (1139)
246 2ff4_A Probable regulatory pro 92.2 0.46 1.6E-05 43.9 8.4 58 382-439 174-232 (388)
247 1nzn_A CGI-135 protein, fissio 91.8 0.22 7.4E-06 37.0 4.5 80 395-474 17-102 (126)
248 3ffl_A Anaphase-promoting comp 91.5 0.56 1.9E-05 36.6 6.7 27 447-473 123-149 (167)
249 4b4t_P 26S proteasome regulato 90.6 10 0.00036 35.5 16.0 96 311-406 140-245 (445)
250 3lpz_A GET4 (YOR164C homolog); 90.3 9.4 0.00032 33.9 19.1 121 332-473 83-214 (336)
251 3ffl_A Anaphase-promoting comp 89.4 1.7 5.9E-05 33.8 7.8 25 346-370 66-90 (167)
252 4fhn_B Nucleoporin NUP120; pro 89.2 3.7 0.00013 44.0 13.1 111 28-141 815-957 (1139)
253 3o48_A Mitochondria fission 1 89.1 0.95 3.3E-05 33.7 5.9 66 408-473 36-105 (134)
254 1v54_E Cytochrome C oxidase po 88.9 0.89 3.1E-05 31.8 5.2 62 324-387 26-87 (109)
255 1zbp_A Hypothetical protein VP 88.7 0.98 3.3E-05 38.5 6.5 117 353-481 7-135 (273)
256 2qx5_A Nucleoporin NIC96; mRNA 88.7 20 0.00068 35.4 19.8 36 211-250 300-335 (661)
257 1y8m_A FIS1; mitochondria, unk 88.7 2.9 9.9E-05 31.6 8.3 80 395-474 22-105 (144)
258 2wpv_A GET4, UPF0363 protein Y 88.5 12 0.00042 32.8 19.1 25 60-84 35-59 (312)
259 2uwj_G Type III export protein 87.8 5.2 0.00018 27.9 8.3 57 288-347 50-106 (115)
260 3lpz_A GET4 (YOR164C homolog); 87.0 16 0.00054 32.4 20.6 23 61-83 38-60 (336)
261 2p58_C Putative type III secre 87.0 5.5 0.00019 27.8 8.1 57 288-347 51-107 (116)
262 4gns_B Protein CSD3, chitin bi 86.8 17 0.00057 36.6 15.0 130 62-201 252-398 (754)
263 2ff4_A Probable regulatory pro 86.4 2.9 0.0001 38.5 9.0 73 310-383 173-249 (388)
264 3ltj_A Alpharep-4; protein eng 86.1 12 0.00042 30.2 19.1 154 56-233 26-179 (201)
265 4ady_A RPN2, 26S proteasome re 85.6 36 0.0012 35.2 27.6 148 288-439 501-656 (963)
266 1zbp_A Hypothetical protein VP 85.3 2 6.9E-05 36.6 6.5 58 388-445 6-64 (273)
267 2uwj_G Type III export protein 83.2 9.5 0.00032 26.6 9.1 61 181-244 46-106 (115)
268 3txn_A 26S proteasome regulato 82.8 29 0.00098 31.8 19.0 92 143-234 19-128 (394)
269 2y69_E Cytochrome C oxidase su 82.3 3 0.0001 31.0 5.5 61 325-387 70-130 (152)
270 1v54_E Cytochrome C oxidase po 80.9 12 0.00042 26.2 8.6 44 409-452 42-85 (109)
271 3esl_A Checkpoint serine/threo 79.3 12 0.00042 30.2 8.7 27 414-440 117-143 (202)
272 2p58_C Putative type III secre 78.0 15 0.00052 25.7 8.7 76 39-117 21-97 (116)
273 4b4t_R RPN7, 26S proteasome re 76.7 8.5 0.00029 35.9 8.4 58 382-439 134-195 (429)
274 1oyz_A Hypothetical protein YI 76.3 36 0.0012 29.1 21.0 177 22-222 34-223 (280)
275 2wpv_A GET4, UPF0363 protein Y 71.4 53 0.0018 28.8 18.0 62 378-439 133-215 (312)
276 3txn_A 26S proteasome regulato 71.0 63 0.0021 29.5 20.3 158 26-199 20-206 (394)
277 4b4t_R RPN7, 26S proteasome re 71.0 14 0.00048 34.4 8.3 56 275-335 134-195 (429)
278 4a1g_A Mitotic checkpoint seri 70.2 24 0.00081 27.1 7.9 40 431-470 84-125 (152)
279 2y69_E Cytochrome C oxidase su 70.0 32 0.0011 25.7 8.6 45 408-452 84-128 (152)
280 1n11_A Ankyrin; clathrin, BAND 66.9 79 0.0027 29.1 17.0 80 34-114 20-102 (437)
281 4b4t_S RPN3, 26S proteasome re 64.2 58 0.002 30.9 10.7 61 58-118 231-299 (523)
282 2wvi_A Mitotic checkpoint seri 64.0 35 0.0012 26.6 7.8 31 412-442 96-126 (164)
283 1oyz_A Hypothetical protein YI 63.6 69 0.0024 27.3 20.8 48 56-103 35-82 (280)
284 3eiq_C Programmed cell death p 61.3 93 0.0032 27.9 18.1 211 28-248 57-296 (358)
285 1te4_A Conserved protein MTH18 57.7 27 0.00091 25.7 6.3 91 22-115 23-113 (131)
286 1ug3_A EIF4GI, eukaryotic prot 57.5 86 0.003 27.9 10.5 71 28-100 14-88 (339)
287 3esl_A Checkpoint serine/threo 57.0 76 0.0026 25.6 9.8 44 74-117 95-143 (202)
288 1wdy_A 2-5A-dependent ribonucl 56.3 90 0.0031 26.3 13.3 53 149-201 8-63 (285)
289 2nsz_A Programmed cell death p 54.4 56 0.0019 24.2 7.3 71 28-100 10-85 (129)
290 1te4_A Conserved protein MTH18 54.0 62 0.0021 23.7 10.3 93 3-98 35-127 (131)
291 4gq2_M Nucleoporin NUP120; bet 52.7 1.3E+02 0.0043 31.5 12.2 54 64-118 816-869 (950)
292 4aez_C MAD3, mitotic spindle c 48.6 69 0.0023 26.4 7.4 31 412-442 150-180 (223)
293 3bqo_A Telomeric repeat-bindin 48.5 46 0.0016 26.7 6.1 20 34-53 126-145 (211)
294 3bqo_A Telomeric repeat-bindin 48.2 90 0.0031 25.0 7.7 72 395-466 94-171 (211)
295 3eiq_C Programmed cell death p 47.9 45 0.0015 30.0 6.9 62 310-372 219-282 (358)
296 3bu8_A Telomeric repeat-bindin 47.6 45 0.0015 27.1 6.0 59 359-417 88-152 (235)
297 2nsz_A Programmed cell death p 46.3 86 0.003 23.1 8.1 66 177-242 10-80 (129)
298 2ion_A PDCD4, programmed cell 43.3 77 0.0026 24.2 6.7 66 177-242 12-82 (152)
299 1wdy_A 2-5A-dependent ribonucl 42.6 1.5E+02 0.0051 24.8 14.2 185 31-239 8-213 (285)
300 1ya0_A SMG-7 transcript varian 42.1 81 0.0028 29.9 8.0 54 418-471 158-211 (497)
301 2zu6_B Programmed cell death p 41.5 1.8E+02 0.0062 25.4 16.6 67 177-243 169-240 (307)
302 2d2s_A Exocyst complex compone 41.1 97 0.0033 25.8 7.5 89 29-117 22-119 (235)
303 4aez_C MAD3, mitotic spindle c 39.5 1.6E+02 0.0053 24.3 8.2 53 325-378 131-184 (223)
304 3mv2_A Coatomer subunit alpha; 37.9 2.1E+02 0.0072 25.1 10.9 110 318-445 124-240 (325)
305 4gq2_M Nucleoporin NUP120; bet 37.6 2.5E+02 0.0087 29.3 11.6 46 414-459 899-949 (950)
306 3eu9_A Huntingtin-interacting 37.3 1.5E+02 0.005 24.0 8.4 14 185-198 17-30 (240)
307 4a1g_A Mitotic checkpoint seri 37.0 1.4E+02 0.0048 22.8 9.5 74 42-118 52-130 (152)
308 3ljn_A Hypothetical protein; a 36.4 1.8E+02 0.0062 25.7 9.5 85 153-239 27-115 (364)
309 2d2s_A Exocyst complex compone 35.9 70 0.0024 26.7 5.8 86 314-403 24-115 (235)
310 3ubw_A 14-3-3E, 14-3-3 protein 35.2 2.1E+02 0.007 24.3 10.1 163 314-477 37-231 (261)
311 2ion_A PDCD4, programmed cell 35.0 1.5E+02 0.0051 22.6 9.4 71 28-100 12-87 (152)
312 1k1a_A B-cell lymphoma 3-encod 34.3 1.7E+02 0.0058 23.7 8.4 144 288-437 17-172 (241)
313 3kea_A K1L; tropism, ANK repea 33.9 1.9E+02 0.0066 24.5 8.9 20 386-405 133-152 (285)
314 3bu8_A Telomeric repeat-bindin 33.0 78 0.0027 25.8 5.2 27 33-59 122-148 (235)
315 3ygs_P Procaspase 9; apoptosis 32.1 72 0.0025 22.1 4.6 36 73-108 52-87 (97)
316 3uzd_A 14-3-3 protein gamma; s 31.6 2.3E+02 0.0079 23.7 9.8 159 314-473 10-201 (248)
317 4b4t_S RPN3, 26S proteasome re 29.6 66 0.0023 30.5 5.1 63 344-410 232-301 (523)
318 3ygs_P Procaspase 9; apoptosis 29.4 66 0.0023 22.3 4.0 38 188-225 51-88 (97)
319 3kae_A CDC27, possible protein 28.2 2.2E+02 0.0075 22.4 12.7 52 184-237 43-94 (242)
320 4ady_A RPN2, 26S proteasome re 27.9 5.4E+02 0.018 26.8 32.5 182 288-473 385-587 (963)
321 1k1a_A B-cell lymphoma 3-encod 27.4 2.4E+02 0.0084 22.7 10.1 28 212-239 13-40 (241)
322 2br9_A 14-3-3E, 14-3-3 protein 27.3 2.7E+02 0.0092 23.1 8.6 52 428-479 146-207 (234)
323 3eu9_A Huntingtin-interacting 26.9 2.5E+02 0.0084 22.6 8.9 204 5-232 17-234 (240)
324 3hra_A Ankyrin repeat family p 26.6 2.3E+02 0.0078 22.1 7.7 180 150-367 9-199 (201)
325 1ug3_A EIF4GI, eukaryotic prot 26.5 3.3E+02 0.011 24.1 9.1 27 62-88 15-41 (339)
326 1o9d_A 14-3-3-like protein C; 26.3 3E+02 0.01 23.3 9.0 159 314-473 14-205 (260)
327 1bd8_A P19INK4D CDK4/6 inhibit 25.7 1.8E+02 0.0063 21.4 6.6 20 387-406 73-92 (156)
328 3mkr_B Coatomer subunit alpha; 25.6 3.4E+02 0.012 23.8 8.8 37 408-444 192-230 (320)
329 3us6_A Histidine-containing ph 25.6 2.2E+02 0.0076 21.6 8.5 40 177-216 10-50 (153)
330 2fu4_A Ferric uptake regulatio 25.5 1.4E+02 0.0049 19.4 5.2 60 333-394 7-67 (83)
331 3jxi_A Vanilloid receptor-rela 25.3 2.8E+02 0.0097 22.8 8.3 91 315-406 9-117 (260)
332 2fe3_A Peroxide operon regulat 24.9 1.3E+02 0.0043 22.7 5.2 33 314-346 27-59 (145)
333 3b7b_A Euchromatic histone-lys 23.4 2.9E+02 0.0099 22.2 11.2 53 386-439 181-234 (237)
334 2xig_A Ferric uptake regulatio 22.8 1.8E+02 0.006 22.1 5.7 45 313-357 31-75 (150)
335 1n11_A Ankyrin; clathrin, BAND 22.3 4.4E+02 0.015 23.9 17.2 111 5-116 22-137 (437)
336 4b4t_O 26S proteasome regulato 22.0 4.5E+02 0.015 23.8 9.3 26 414-439 129-154 (393)
337 2o03_A Probable zinc uptake re 21.8 1.3E+02 0.0043 22.2 4.6 46 313-358 15-60 (131)
338 2r9g_A AAA ATPase, central reg 21.7 3.2E+02 0.011 22.0 7.3 57 319-377 25-86 (204)
339 4fke_A Aminopeptidase N; zinc 21.4 6.9E+02 0.024 25.8 12.7 25 209-233 690-717 (909)
340 3ljn_A Hypothetical protein; a 20.7 4.3E+02 0.015 23.2 10.3 22 385-406 176-197 (364)
341 2p1h_A APAF-1, apoptotic prote 20.4 1E+02 0.0035 21.0 3.6 38 187-224 49-86 (94)
342 3aji_A 26S proteasome non-ATPa 20.4 3.3E+02 0.011 21.7 9.3 20 181-200 10-29 (231)
343 4ets_A Ferric uptake regulatio 20.1 1.4E+02 0.0049 23.0 4.7 23 315-337 39-61 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-40 Score=331.53 Aligned_cols=456 Identities=9% Similarity=-0.038 Sum_probs=345.4
Q ss_pred cCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|+++....|+..++..++.+|.+.|++++|..+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34566667777777777778888999999999999999999999998877788888888999999999999999999988
Q ss_pred --ccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcc---hhhHHHHHHHHHHHHhcCch
Q 046354 85 --YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA---KLEVISWTTMCTGLERNAMT 159 (510)
Q Consensus 85 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~l~~~~~~~~~~ 159 (510)
..++..+++.++.+|.+.|++++|.++|+++....+. ..++...+..+ ..+..++..++.+|.+.|++
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-------EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp CGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-----------------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-------ccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 5578888999999999999999999999864332100 00111111111 11556677777777777777
Q ss_pred HHHHHHHhhCC--CCC-hhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHh
Q 046354 160 KLAREYFVQMP--NKD-IVAWNA--------------------------------------MITAYVDAGNMAQASELFN 198 (510)
Q Consensus 160 ~~a~~~~~~~~--~~~-~~~~~~--------------------------------------li~~~~~~g~~~~A~~~~~ 198 (510)
++|.++|+++. .|+ ...+.. ++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 77777777765 222 222222 2445567788888888888
Q ss_pred hCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh---hHHHHHHHHhCCCcchh
Q 046354 199 LMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---MLAHALAIRLGFEQETS 273 (510)
Q Consensus 199 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~ 273 (510)
++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..++..++..+...... ......+. ...+.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHPEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCcccHH
Confidence 8877 6778888888888888888888888888876542 2455566666655433332 23333333 22355677
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 350 (510)
++..++..| .+.|++++|.+.|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++
T Consensus 375 ~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 375 TWLAVGIYY-----LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred HHHHHHHHH-----HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 888888888 999999999999998764 467799999999999999999999999999864 56788999999
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC------CCc--HHHHHHHHHHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH------ERD--HVVLGALLGAC 422 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~~~~l~~~~ 422 (510)
.+|.+.|++++|.++|+++.+. .+.++.+|..++.+|.+.|++++|.++|+++.+. .|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999875 3457889999999999999999999999988643 676 67999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
.+.|++++|...++++++..|+++.+|..++.+|...|++++|.++++++.+..+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998874333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-38 Score=320.74 Aligned_cols=448 Identities=9% Similarity=-0.029 Sum_probs=377.8
Q ss_pred CcccCCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHH
Q 046354 2 SQFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
..|.+.|++++|+.+|+++. .|+..++..++.+|.+.|++++|..+|+.+....++..+++.++.+|.+.|++++|.+
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHH
Confidence 35678899999999999997 5888999999999999999999999999997777899999999999999999999999
Q ss_pred HHHhhccC-------------------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCC-hhhHHHHHHHHHhcCCcc
Q 046354 80 VFDEIYEG-------------------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN-VVSWTTVVLGCAHNGLIA 139 (510)
Q Consensus 80 ~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~ 139 (510)
+|+++... +..+|+.++.+|.+.|++++|.++|++|.+..|+ ...+..+...+...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 99965433 4789999999999999999999999999887554 444554444332221111
Q ss_pred h-----------------hhHHHHHHHHHHHHhcCchHHHHHHHhhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046354 140 K-----------------LEVISWTTMCTGLERNAMTKLAREYFVQMPN--KDIVAWNAMITAYVDAGNMAQASELFNLM 200 (510)
Q Consensus 140 ~-----------------a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 200 (510)
. .....+..++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|++++|.++|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1 1334455567788899999999999999985 88999999999999999999999999998
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhh---hhHHHHHHHHhCCCcchhh
Q 046354 201 PQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSL 274 (510)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 274 (510)
.+ .+..+|+.++.++.+.|++++|..+++++.+. .+.+..++..+...+....+ .......+... .+.+...
T Consensus 332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 409 (597)
T 2xpi_A 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPA 409 (597)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred HHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHH
Confidence 64 46788999999999999999999999999854 34456677777666654433 33333333332 3446778
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
+..++..| .+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.
T Consensus 410 ~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 410 WIGFAHSF-----AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHH-----HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 99999999 999999999999998764 477899999999999999999999999999864 557889999999
Q ss_pred hcCcCCcHHHHHHHHHHHHHhh---CCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAY---GFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
.+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.+..| +..+|..+...|...
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999999999999999997753 44676 67899999999999999999999999876666 788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
|++++|.+.++++++++|+++..+..++.+|.
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4e-29 Score=237.34 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=264.3
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDE 107 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 107 (510)
...+.+.|++++|++.++.+.+..|+. ..+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344556666666666666666555533 3344444555666666666666665533 234556666666666666666
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHH
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAY 184 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 184 (510)
|...|+++.+..|+.. ..+..+..++.+.|++++|.+.|+++. +.+...+..+...+
T Consensus 86 A~~~~~~al~~~p~~~--------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFI--------------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHCTTCH--------------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 6666666655433321 122333344444555555555555554 23345566677777
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHH
Q 046354 185 VDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 261 (510)
...|++++|.+.|+++.+ | +..+|..+...+...|++++|...|+++...+ |+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------------------- 201 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN---------------------- 201 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------------------
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------------------
Confidence 778888888888877654 3 45677788888888888888888888876632 22
Q ss_pred HHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046354 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338 (510)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 338 (510)
....+..+...+ ...|++++|...|++... .+..+|..+...|...|++++|...|+++.+.+
T Consensus 202 ---------~~~~~~~lg~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 202 ---------FLDAYINLGNVL-----KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp ---------CHHHHHHHHHHH-----HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ---------cHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 122233333444 667777888777776554 356788899999999999999999999999853
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
+.+..++..+...+...|++++|...++++.+. .+.+..++..++..+.+.|++++|...++++.+..| +..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344668889999999999999999999999874 456788899999999999999999999999987767 5678999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+...+.+.|++++|...|+++++..|+.+..+..++.++...|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999888764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.3e-27 Score=224.14 Aligned_cols=350 Identities=16% Similarity=0.105 Sum_probs=294.0
Q ss_pred HHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcch
Q 046354 64 MIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK 140 (510)
Q Consensus 64 li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~ 140 (510)
+...+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+..|+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~------------------ 66 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------------------ 66 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------------
Confidence 45667889999999999999854 4 34567778888899999999999999888763432
Q ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 046354 141 LEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDR 214 (510)
Q Consensus 141 a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 214 (510)
...+..+...+.+.|++++|.+.|+++. +.+..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...
T Consensus 67 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 --AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 2345556666777888899999999887 44566899999999999999999999998875 4 45668888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
+...|++++|.+.|+++.... |+ +...+..+...+ ...|+++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~l~~~~-----~~~g~~~ 186 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ--PN-------------------------------FAVAWSNLGCVF-----NAQGEIW 186 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH-----HTTTCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC--CC-------------------------------CHHHHHHHHHHH-----HHcCCHH
Confidence 999999999999999997632 32 233344445555 8899999
Q ss_pred hHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 295 SARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 295 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
+|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.+
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998875 345688899999999999999999999998853 33567888999999999999999999999987
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
. .+.++.++..++.++.+.|++++|.+.++++.+..| +..++..+...+...|++++|...++++++..|+++..+.
T Consensus 266 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 266 L--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp T--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4 344677899999999999999999999999886655 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++.+|.+.|++++|+..++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.2e-28 Score=231.69 Aligned_cols=204 Identities=9% Similarity=0.081 Sum_probs=173.5
Q ss_pred HHHHHhhCCC----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhC
Q 046354 193 ASELFNLMPQ----R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267 (510)
Q Consensus 193 A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (510)
+..+.+.+.+ + ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|......
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~----------- 77 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----------- 77 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC-----------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch-----------
Confidence 3444455543 2 23468889999999999999999999999999999999999999988432110
Q ss_pred CCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
... .+.+.++.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 78 ------------~~~-----~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 78 ------------TES-----SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp ------------SSS-----SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred ------------hhh-----hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 001 456678999999999865 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGA 421 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~ 421 (510)
.||+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+. .|+..||+.++..
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999999999999999999753 8999999999998
Q ss_pred HHhh
Q 046354 422 CRLH 425 (510)
Q Consensus 422 ~~~~ 425 (510)
+...
T Consensus 220 F~s~ 223 (501)
T 4g26_A 220 FKSE 223 (501)
T ss_dssp HHSH
T ss_pred HhcC
Confidence 8754
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.8e-27 Score=228.34 Aligned_cols=181 Identities=13% Similarity=0.195 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHCCCCCCH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGP---------EGAAMKLLNLMFQSRFMPNE 240 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~---------~~~A~~~~~~m~~~g~~p~~ 240 (510)
..+++.+|++|++.|++++|.++|++|.+ ||..+||.||.+|++.+. .++|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 34688899999999999999999999975 899999999999987665 68899999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHH
Q 046354 241 TTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMIL 316 (510)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~ 316 (510)
.||+.+|.++ ++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 106 ~tyn~lI~~~-------------------------------------~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 106 ATFTNGARLA-------------------------------------VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp HHHHHHHHHH-------------------------------------HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------------HhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 9999999988 999999999999999875 89999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999998763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.5e-25 Score=215.63 Aligned_cols=409 Identities=11% Similarity=-0.004 Sum_probs=303.4
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHc
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFK 101 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 101 (510)
...+......+.+.|++++|+..|+++.+..|+...+..+..++...|++++|...++.+.+ | +..+|..+..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34566777888899999999999999988889988999999999999999999999998854 3 45688889999999
Q ss_pred CCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhH-----------------HHHHHHHHHHHhcCchHHHH
Q 046354 102 ARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEV-----------------ISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~-----------------~~~~~l~~~~~~~~~~~~a~ 163 (510)
.|++++|...|+++... +++......++..+........+.. ..................+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999988876 3344444333333222110000000 00000000000011111111
Q ss_pred HHHhhCC----------CCChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHHHHH
Q 046354 164 EYFVQMP----------NKDIVAWNAMITAYVD---AGNMAQASELFNLMPQ----------------R-NVWTWNAMID 213 (510)
Q Consensus 164 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 213 (510)
..+.... +.+...+......+.. .|++++|...|+++.+ | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1222111 1124445555555554 8999999998887643 1 3467888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
.+...|++++|...++++.+.. |+.. .+..+...+ ...|++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~--------------------------------~~~~l~~~~-----~~~~~~ 286 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVN--------------------------------SYIYMALIM-----ADRNDS 286 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHH--------------------------------HHHHHHHHH-----HTSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHH--------------------------------HHHHHHHHH-----HHCCCH
Confidence 9999999999999999987743 3222 223333444 788999
Q ss_pred hhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 294 NSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 294 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
++|...+++... .+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988765 356788999999999999999999999999863 4456788899999999999999999999998
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHh---hCCHHHHHHHHHHHHh
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-------HVVLGALLGACRL---HGDVRMADYIGERLIE 440 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 440 (510)
+. .+.++..+..++..+.+.|++++|...++++.+..|+ ...+..+...+.. .|++++|...++++++
T Consensus 366 ~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 366 RK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 75 3446788899999999999999999999988654332 3388899999999 9999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
..|+++..+..++.+|...|++++|...+++..+.
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988743
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.5e-24 Score=204.51 Aligned_cols=385 Identities=9% Similarity=0.044 Sum_probs=286.7
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-
Q 046354 12 EATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE- 86 (510)
Q Consensus 12 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 86 (510)
.+...+.... +.++..+..+...+.+.|++++|+.+|+++.+..| +...+..+..++...|++++|...|+.+.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444444 34567889999999999999999999999998766 678899999999999999999999999965
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCCh----hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchH
Q 046354 87 --GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160 (510)
Q Consensus 87 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 160 (510)
.+..++..+...|.+.|++++|...|+++.+..|+. ..+..+...+.. ..+..+...+...|+++
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------QRLRSQALNAFGSGDYT 160 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCHH
Confidence 356789999999999999999999999999875543 556666555322 23445667788999999
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 161 LAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 161 ~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
+|.+.++.+. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|...|+++..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 239 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 9999999987 55778899999999999999999999998875 5678999999999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHH
Q 046354 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314 (510)
Q Consensus 235 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 314 (510)
..|+.......+.... ....+..+
T Consensus 240 -~~p~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 263 (450)
T 2y4t_A 240 -LDQDHKRCFAHYKQVK-------------------------------------------------------KLNKLIES 263 (450)
T ss_dssp -HCTTCHHHHHHHHHHH-------------------------------------------------------HHHHHHHH
T ss_pred -hCCChHHHHHHHHHHH-------------------------------------------------------HHHHHHHH
Confidence 3444433322221110 01123345
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPD-----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...+..++.+|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 67788889999999999988874 455 336777788888889999999999888764 244678888888888
Q ss_pred hhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH------------HHhhC-----CHHHHHHHHHH-HHhcCCCCch---
Q 046354 390 RRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA------------CRLHG-----DVRMADYIGER-LIELQPSSSG--- 447 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~~-----~~~~A~~~~~~-~~~~~p~~~~--- 447 (510)
...|++++|...++++.+..|+ ...+..+..+ |...| +.+++.+.|++ .++..|++..
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~ 419 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE 419 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCch
Confidence 8899999999998888777774 4455555522 33334 56777888886 5677776432
Q ss_pred -------hHHHHHHHHHHcCCChHHH
Q 046354 448 -------AYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 448 -------~~~~l~~~~~~~g~~~~A~ 466 (510)
.+..+..+|...|+.+++.
T Consensus 420 ~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 420 EKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2555666666666655543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=214.71 Aligned_cols=411 Identities=12% Similarity=0.015 Sum_probs=311.1
Q ss_pred cccCCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHHH
Q 046354 3 QFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~ 79 (510)
.+.+.|++++|+..|+.+. .|++..|..+..++.+.|++++|+..|+++.+..|+ ...+..+..++...|++++|..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3567899999999999997 689999999999999999999999999999988774 5788899999999999999999
Q ss_pred HHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHHHhcc---------------------ccCCChhhHHHHHHHHHhc
Q 046354 80 VFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMP---------------------LKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 80 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------------~~~~~~~~~~~ll~~~~~~ 135 (510)
.|+.+.+. +......++..+........+.+.+..+. ...|+.......+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 99999542 33344444444443333332222221110 0022222222221111111
Q ss_pred CCcc----hhhHHHHHHHHHHHHh---cCchHHHHHHHhhCCC-----------------CChhHHHHHHHHHHhcCCHH
Q 046354 136 GLIA----KLEVISWTTMCTGLER---NAMTKLAREYFVQMPN-----------------KDIVAWNAMITAYVDAGNMA 191 (510)
Q Consensus 136 ~~~~----~a~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~ 191 (510)
.... ..+...+......+.. .|+++.|...++++.. .+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1110 1134555555555554 8999999999987653 12457788899999999999
Q ss_pred HHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCC
Q 046354 192 QASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269 (510)
Q Consensus 192 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (510)
+|...|+++.+ |+...+..+...+...|++++|...++++.... |
T Consensus 255 ~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------- 301 (514)
T 2gw1_A 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--S------------------------------- 301 (514)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--T-------------------------------
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--c-------------------------------
Confidence 99999998765 557889999999999999999999999997643 2
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.+...+..+...+ ...|++++|...|++..+ .+...+..+...|...|++++|...++++.+.. +.+...+
T Consensus 302 ~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 302 NNSSVYYHRGQMN-----FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TCTHHHHHHHHHH-----HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred CCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 1223334444455 888999999999998754 456788999999999999999999999998863 4466788
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhh---cCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRR---AGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
..+...+...|++++|...++.+.+...-.++ ...+..++..+.. .|++++|...++++.+..| +..++..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88999999999999999999999875222222 3388899999999 9999999999999876666 67788899
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
...+...|++++|...+++++++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999988776655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.6e-23 Score=207.83 Aligned_cols=406 Identities=12% Similarity=0.014 Sum_probs=282.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 99 (510)
....|..+...+.+.|++++|+..|+++.+..| +...+..+..++...|++++|.+.++.+.+ .+..++..+...+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456677788888888888888888888887766 567777888888888888888888888754 3456777888888
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh----------------hHHHHHHHHHHHHhcCchHHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------------EVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a----------------~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
...|++++|...|+.+... |+.... .+..+...+....+ ........+..+....+.+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN-GDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHhcC-CCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 8888888888888644322 221110 01111100000000 0000011222333444455555
Q ss_pred HHHhhCCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhcCChH
Q 046354 164 EYFVQMPNKDIV---AWNAMITAYVD--------AGNMAQASELFNLMPQ--RN--------VWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 164 ~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~ 222 (510)
..+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 555444422222 22333322222 2477888888887765 33 234666777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|...++++... .|+. ..+..+...+ ...|++++|...|++
T Consensus 261 ~A~~~~~~~~~~--~~~~--------------------------------~~~~~l~~~~-----~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTP--------------------------------NSYIFLALTL-----ADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHHHHHHH--CCCH--------------------------------HHHHHHHHHT-----CCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCc--------------------------------hHHHHHHHHH-----HHhcCHHHHHHHHHH
Confidence 888888888763 2332 2333344444 889999999999988
Q ss_pred cCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 303 LEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 303 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
..+ .+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 765 456789999999999999999999999998863 445678888899999999999999999999875 34467
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcC
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLH----------GDVRMADYIGERLIELQ 442 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~ 442 (510)
..+..+...+...|++++|...++++.+..| ....+......+... |++++|...++++++..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 7888999999999999999999988764322 122344455667777 99999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
|+++..+..++.+|...|++++|.+.+++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.7e-23 Score=199.58 Aligned_cols=337 Identities=11% Similarity=0.044 Sum_probs=247.9
Q ss_pred hHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 43 KAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 43 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+...+.......| +...+..+...+.+.|++++|..+|+.+.+ .+..+|..+..++...|++++|...|+++.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444 567788888888888888888888888854 35677888888888888888888888888764
Q ss_pred CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 046354 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198 (510)
Q Consensus 119 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (510)
.|+ +..++..+..+|.+.|++++|...|+
T Consensus 90 ~p~---------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 90 KMD---------------------------------------------------FTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp CTT---------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC---------------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 22334444445555555555555555
Q ss_pred hCCC--CC-h---hhHHH------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHH
Q 046354 199 LMPQ--RN-V---WTWNA------------MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260 (510)
Q Consensus 199 ~~~~--~~-~---~~~~~------------li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 260 (510)
++.+ |+ . ..+.. +...+...|++++|...|+++.+.. |
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~---------------------- 174 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--V---------------------- 174 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T----------------------
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C----------------------
Confidence 4433 21 1 23333 3455888999999999999997632 2
Q ss_pred HHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046354 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
.+..++..++..| ...|++++|...|+++.+ .+..+|..+...|...|++++|...|+++...
T Consensus 175 ---------~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 175 ---------WDAELRELRAECF-----IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp ---------TCHHHHHHHHHHH-----HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CChHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333444555556 889999999999998865 46789999999999999999999999999975
Q ss_pred CCCCCch-hHHHH------------HHhcCcCCcHHHHHHHHHHHHHhhCCCCC-----cchhHhHHhHHhhcCChHHHH
Q 046354 338 GTKPDEI-TFVGV------------LSDCSHAGLVEKGRKTFNLMSRAYGFKPR-----AEHYSCLADILRRAGQVKEAM 399 (510)
Q Consensus 338 g~~p~~~-~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 399 (510)
.|+.. .+..+ ...+...|++++|..+|+.+.+. .|+ ...+..++.++.+.|++++|.
T Consensus 241 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 241 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45544 44443 77888999999999999999875 454 347888999999999999999
Q ss_pred HHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHHcC-----C
Q 046354 400 RVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN------------VHAARG-----E 461 (510)
Q Consensus 400 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~ 461 (510)
..++++.+..| +..+|..+..+|...|++++|...+++++++.|+++..+..++. .|...| +
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 99999876666 67899999999999999999999999999999999999998884 455566 5
Q ss_pred ChHHHHHHHHHH
Q 046354 462 WDEFAQVRKKME 473 (510)
Q Consensus 462 ~~~A~~~~~~~~ 473 (510)
.+++.+.++++.
T Consensus 396 ~~~~~~~y~~~~ 407 (450)
T 2y4t_A 396 KQEIIKAYRKLA 407 (450)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777777643
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.2e-21 Score=192.37 Aligned_cols=384 Identities=10% Similarity=0.022 Sum_probs=259.6
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC-ChhhHHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGC 132 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~ 132 (510)
....+..+...+.+.|++++|.+.|+++.+ .+..+|..+..+|.+.|++++|.+.|+++.+..| +..++..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456778889999999999999999999955 4667899999999999999999999999988744 444455555444
Q ss_pred HhcCCcchhhHHH---------HHHHHHHHHhcCchHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHH
Q 046354 133 AHNGLIAKLEVIS---------WTTMCTGLERNAMTKLAREYFVQMPNK------DIVAWNAMITAYVDAGNMAQASELF 197 (510)
Q Consensus 133 ~~~~~~~~a~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 197 (510)
...|+++.+-... ....+..+...+....+...++.+... ........+..+...++.+.+...+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 4444444431100 001111122222223333333333210 0001122233334444444444444
Q ss_pred hhCCCCChh---hHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhhhhhhhHHHHHHHH
Q 046354 198 NLMPQRNVW---TWNAMIDRYAR--------NGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSCEGMLENMLAHALAIR 265 (510)
Q Consensus 198 ~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~ 265 (510)
......+.. ....+...+.. .|++++|..+++++.+. .|+... +..+.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~------------------ 243 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAA------------------ 243 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHH------------------
Confidence 444332211 22222222221 24677777777777653 232211 11111
Q ss_pred hCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
..+..+...+ ...|++++|...|++... |+...|..+...|...|++++|...++++.+.. +.+.
T Consensus 244 -------~~~~~~g~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 244 -------LALCYTGIFH-----FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp -------HHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred -------HHHHHHHHHH-----HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 1122333444 778999999999998875 667788888999999999999999999998863 4556
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
.++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..| +...+..+...+
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 78888999999999999999999999875 234577888999999999999999999998876666 566888999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchh------HHHHHHHHHHc----------CCChHHHHHHHHHHHh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGA------YVLSANVHAAR----------GEWDEFAQVRKKMERR 475 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 475 (510)
...|++++|...++++++..|+++.. +..++.++... |++++|...++++.+.
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 99999999999999999888766555 34556778888 9999999999988743
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.6e-20 Score=171.16 Aligned_cols=322 Identities=12% Similarity=0.071 Sum_probs=228.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 99 (510)
|+..+..+...+.+.|++++|+..|+++.+..| +...+..+...+...|++++|...++.+.+ | +..++..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456788888999999999999999999988877 577888899999999999999999999854 3 557899999999
Q ss_pred HcCCChHHHHHHHHhccccCC---C-hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChh
Q 046354 100 FKARQVDEGRRLFDRMPLKLK---N-VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 175 (510)
...|++++|...|+++.+..| + ...+..+..... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------------~~ 121 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------------------------MQ 121 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------------------------HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------------------------HH
Confidence 999999999999999988655 2 222222111100 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.... |+
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 186 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD------------- 186 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC-------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-------------
Confidence 223345566666777777766666543 345666667777777777777777777665421 11
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+...|..+...|...|++++|...++
T Consensus 187 ------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 187 ------------------------------------------------------NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23345556666667777777777777
Q ss_pred HHHHcCCCCCc-hhHH------------HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-c----chhHhHHhHHhhcCC
Q 046354 333 RMLKSGTKPDE-ITFV------------GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-A----EHYSCLADILRRAGQ 394 (510)
Q Consensus 333 ~m~~~g~~p~~-~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~ 394 (510)
+..+. .|+. ..+. .+...+...|++++|...++.+.+. .|+ + ..+..+..++.+.|+
T Consensus 213 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 213 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccC
Confidence 77664 2332 2222 2245567778888888888888765 233 2 224456778888888
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
+++|...+++..+..| +..++..+...+...|++++|...|+++++.+|+++..+..+..++...
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8888888888776556 6678888888888888888888888888888888887777777665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.9e-20 Score=173.11 Aligned_cols=304 Identities=12% Similarity=0.020 Sum_probs=245.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 215 (510)
++..+..+...+...|++++|.+.|+.+. +.+..++..+..++...|++++|...|+++.+ | +...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34567778889999999999999999987 55678899999999999999999999998865 3 668899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMP---NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
...|++++|...|+++.+. .| +.......+..... ..........+ ...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~-----~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------------------MQRLRSQALDA-----FDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH-----HHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHH-----HHccC
Confidence 9999999999999999874 45 22222222111100 01122233445 78999
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
+++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998765 456788999999999999999999999999863 556778889999999999999999999999
Q ss_pred HHhhCCCCCcchhH------------hHHhHHhhcCChHHHHHHHhhCCCCCCcHH-----HHHHHHHHHHhhCCHHHHH
Q 046354 370 SRAYGFKPRAEHYS------------CLADILRRAGQVKEAMRVVSKMPPHERDHV-----VLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 370 ~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~ 432 (510)
.+. .+.+...+. .++..+.+.|++++|...++++.+..|+.. .+..+...+...|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 875 222333332 236678999999999999998876666432 3455778899999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998773
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.7e-19 Score=163.77 Aligned_cols=270 Identities=12% Similarity=0.018 Sum_probs=158.6
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-C
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNG-P 220 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~ 220 (510)
.++..+...|++++|.++++++. +.+...+..++.++...|++++|...++++.+ .+...|..+...+...| +
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 34455555666777777776665 33445555666667777777777777766654 34566666777777777 6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHh
Q 046354 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 300 (510)
+++|...|+++.... |+ +...+..+...+ ...|++++|...|
T Consensus 107 ~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~l~~~~-----~~~~~~~~A~~~~ 148 (330)
T 3hym_B 107 NEHARRYLSKATTLE--KT-------------------------------YGPAWIAYGHSF-----AVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHHHHHHHTTC--TT-------------------------------CTHHHHHHHHHH-----HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--Cc-------------------------------cHHHHHHHHHHH-----HHccCHHHHHHHH
Confidence 777777777765432 11 122222333333 5566666666666
Q ss_pred cccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCC--
Q 046354 301 ERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF-- 375 (510)
Q Consensus 301 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-- 375 (510)
++..+ .+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 65543 233455556666666666666666666666542 333455556666666666666666666666553110
Q ss_pred -----CCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 376 -----KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 376 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
+....++..+..++.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 22344556666666666666666666666554434 445566666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 046354 450 VLSANVH 456 (510)
Q Consensus 450 ~~l~~~~ 456 (510)
..++.++
T Consensus 308 ~~l~~~~ 314 (330)
T 3hym_B 308 TMLGHCI 314 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4e-17 Score=161.13 Aligned_cols=401 Identities=13% Similarity=0.103 Sum_probs=271.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISG 98 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~ 98 (510)
+-|...|..++. +.+.|++++|..+|+++.+..| +...|..++..+.+.|++++|..+|++.++ |+...|..++..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346788999998 4789999999999999999877 566889999999999999999999999965 777777777753
Q ss_pred H-HcCCChHHHHH----HHHhcccc----CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhC
Q 046354 99 Y-FKARQVDEGRR----LFDRMPLK----LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169 (510)
Q Consensus 99 ~-~~~g~~~~A~~----~~~~m~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 169 (510)
. ...|+.+.|.+ +|++.... .++...|...+.......... .+...|+++.|..+|++.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG------------SYAENQRITAVRRVYQRG 156 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS------------STTHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc------------cHHHHhHHHHHHHHHHHH
Confidence 3 35677777765 66665442 123344444443322211000 012367888899998887
Q ss_pred C-CCCh---hHHHHHHHHHH-------------hcCCHHHHHHHHhh-------CC------CCC--------hhhHHHH
Q 046354 170 P-NKDI---VAWNAMITAYV-------------DAGNMAQASELFNL-------MP------QRN--------VWTWNAM 211 (510)
Q Consensus 170 ~-~~~~---~~~~~li~~~~-------------~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~l 211 (510)
. .|.. ..|........ +.+++..|..++.. +. .|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7 3322 23332222110 12334444433332 10 011 1223333
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 212 IDRYARN----GPE----GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 212 i~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
+...... ++. .+|..+|++.... .+.++.+|...+..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---------------------------------~p~~~~~w~~~~~~~- 282 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---------------------------------LGHHPDIWYEAAQYL- 282 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---------------------------------HTTCHHHHHHHHHHH-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh---------------------------------CCCCHHHHHHHHHHH-
Confidence 2221111 111 1333334333321 133445555555554
Q ss_pred cccccc-------ccChh-------hHHHHhcccCC---C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc--
Q 046354 284 FWDWGF-------QLDVN-------SARLAFERLEA---K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-- 343 (510)
Q Consensus 284 ~~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 343 (510)
.. .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+.
T Consensus 283 ----~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 356 (530)
T 2ooe_A 283 ----EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT 356 (530)
T ss_dssp ----HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred ----HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence 43 68877 89999998774 3 4678999999999999999999999999984 5653
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhH-HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADI-LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLG 420 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 420 (510)
..|...+..+.+.|+.+.|.++|++..+. +| +...+...+.. +...|+.++|..+|++..+..| +...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47888888888899999999999999863 34 33333332222 3368999999999998876667 6789999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 421 ACRLHGDVRMADYIGERLIELQPSSSG----AYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
.+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+.++.+++.+..+.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998877665 6777888888999999999999998855553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.9e-19 Score=161.58 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=221.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. |
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------- 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--P--------- 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T---------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c---------
Confidence 45667788889999999999999999998865 355677788899999999999999999997742 2
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGH 323 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 323 (510)
.+...+..+...+ ...| ++++|...|++... .+...|..+...+...|+
T Consensus 88 ----------------------~~~~~~~~l~~~~-----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 88 ----------------------SNPVSWFAVGCYY-----LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp ----------------------TSTHHHHHHHHHH-----HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred ----------------------CCHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 2233334444445 7788 89999999998775 356789999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++
T Consensus 141 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 141 HDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999863 445677888889999999999999999999863 34467888999999999999999999998
Q ss_pred hCCCC----------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 404 KMPPH----------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 404 ~~~~~----------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++.+. .....++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77532 22456889999999999999999999999999999999999999999999999999999999665
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=9.3e-18 Score=151.32 Aligned_cols=271 Identities=10% Similarity=0.006 Sum_probs=213.9
Q ss_pred HHHHhcCchHHHHHHHhhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046354 151 TGLERNAMTKLAREYFVQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 226 (510)
+-....|+++.|+...+.....++ .....+.++|...|+++.|...++....|+..++..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 445678999999999988763332 3456678999999999999998887655778889999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC
Q 046354 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306 (510)
Q Consensus 227 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 306 (510)
.++++...+..|+...+...+. ..+ ...|++++|.+.+++ ..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la-------------------------------~~~-----~~~g~~~~Al~~l~~--~~ 128 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAA-------------------------------SIY-----FYDQNPDAALRTLHQ--GD 128 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHH-------------------------------HHH-----HHTTCHHHHHHHHTT--CC
T ss_pred HHHHHHhcccCCCCHHHHHHHH-------------------------------HHH-----HHCCCHHHHHHHHhC--CC
Confidence 9999988777676655544433 223 788999999999998 56
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (510)
+...+..++..|.+.|++++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.++..++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~ 204 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLN 204 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 7778999999999999999999999999886 4664322 12233444668999999999999885 466788889
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM-ADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
.+..++.+.|++++|...++++.+..| +..++..++..+...|+..+ +.++++++++.+|+++.... ...+.+.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~ 280 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKEND 280 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHH
Confidence 999999999999999999999887777 67788999989888998865 67899999999999975433 3444444
Q ss_pred ChHHHH
Q 046354 462 WDEFAQ 467 (510)
Q Consensus 462 ~~~A~~ 467 (510)
++++..
T Consensus 281 fd~~~~ 286 (291)
T 3mkr_A 281 FDRLVL 286 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6e-17 Score=158.20 Aligned_cols=378 Identities=11% Similarity=0.012 Sum_probs=284.1
Q ss_pred HHHHhhcC-CCChhhHHHHHHHHHh----cCChhhHHHHHHhccccCCChhHHHHHHHHHHh----cCChhhHHHHHHhh
Q 046354 14 TKLFDEMS-QPDPVSCASMITVFLR----NHDLPKAEALFRAMPESQRNIVAESAMIDGYVK----AGRVDEARKVFDEI 84 (510)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~ 84 (510)
...++... ..++.++..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.+.|++.
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 105 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34444433 5578888888888888 89999999999998875 466777888888888 89999999999998
Q ss_pred ccC-ChhhHHHHHHHHHc----CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh----
Q 046354 85 YEG-NVYSWTSLISGYFK----ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER---- 155 (510)
Q Consensus 85 ~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~---- 155 (510)
.+. +...+..|...|.. .+++++|...|++..+. .+.. .+..+...|..
T Consensus 106 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~---------------------a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 106 ALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDS---------------------GQQSMGDAYFEGDGV 163 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHH---------------------HHHHHHHHHHHTSSS
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHH---------------------HHHHHHHHHHcCCCC
Confidence 664 56677788888887 78999999999987662 2222 33334444544
Q ss_pred cCchHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHH
Q 046354 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAM 225 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~ 225 (510)
.++.++|.+.|++.. ..++..+..+...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 164 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 678888999888876 5677788888888888 8999999999988765 567778888888876 78999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
..|++..+.|... .+ ..+...|. ......++.++|...|++..+
T Consensus 244 ~~~~~a~~~~~~~---a~--------------------------------~~lg~~y~-~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 244 VLFSQSAEQGNSI---AQ--------------------------------FRLGYILE-QGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHHHTTTCHH---HH--------------------------------HHHHHHHH-HTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHH---HH--------------------------------HHHHHHHH-CCCCCCCCHHHHHHHHHHHHH
Confidence 9999987754211 11 11111110 000336889999999988766
Q ss_pred -CChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC---cHHHHHHHHHHHHHhhCCC
Q 046354 306 -KDVVSWTAMILAYSNH-----GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG---LVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 306 -~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~ 376 (510)
.+...+..+...|... +++++|...|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 288 ~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---- 360 (490)
T 2xm6_A 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---- 360 (490)
T ss_dssp TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----
T ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----
Confidence 4566778888888887 89999999999998865 3445666666665545 889999999999874
Q ss_pred CCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC---C
Q 046354 377 PRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPS---S 445 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~ 445 (510)
.++..+..|...|.. .+++++|.+.|++..+. .+...+..|...|.. .+++++|...|+++.+.+|+ +
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 467788888888888 89999999999987633 357788888888887 79999999999999988854 5
Q ss_pred chhHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAA 458 (510)
Q Consensus 446 ~~~~~~l~~~~~~ 458 (510)
+.....++.++..
T Consensus 440 ~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 440 ENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTTSCHH
T ss_pred HHHHHHHHhcCHh
Confidence 5566666665543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=4.6e-19 Score=166.61 Aligned_cols=280 Identities=13% Similarity=0.027 Sum_probs=206.7
Q ss_pred HhcCchHHHHH-HHhhCC--CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChH
Q 046354 154 ERNAMTKLARE-YFVQMP--NK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 154 ~~~~~~~~a~~-~~~~~~--~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 222 (510)
...|+++.|.+ .+++.. .| +...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34466777777 776555 11 245577778888888888888888877654 35667778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|...|+++.+.. |+ +...+..+...+ ...|++++|...|++
T Consensus 116 ~A~~~~~~al~~~--~~-------------------------------~~~~~~~l~~~~-----~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 116 LAISALRRCLELK--PD-------------------------------NQTALMALAVSF-----TNESLQRQACEILRD 157 (368)
T ss_dssp HHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH-----HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CC-------------------------------CHHHHHHHHHHH-----HHcCCHHHHHHHHHH
Confidence 8888888876632 21 222333334444 677777787777776
Q ss_pred cCC--C-ChhhHHH---------------HHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHHHHH
Q 046354 303 LEA--K-DVVSWTA---------------MILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 303 ~~~--~-~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 363 (510)
+.. | +...+.. .+..+...|++++|...++++.+..... +..++..+...+...|++++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 654 1 1112211 2333448899999999999999863111 4678888999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
..++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...|...|++++|...++++++..
T Consensus 238 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999875 344678899999999999999999999999876666 57789999999999999999999999999988
Q ss_pred CCC-----------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 443 PSS-----------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 443 p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|++ +..+..++.+|...|++++|..++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 887 7789999999999999999999987444
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2e-17 Score=152.26 Aligned_cols=342 Identities=12% Similarity=0.095 Sum_probs=156.4
Q ss_pred ccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHh
Q 046354 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
+-+.|++++|.+.++++.+| .+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|.+.++.
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45678899999999999655 49999999999999999999999653 6777999999999999999999998887
Q ss_pred hcc--CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhc
Q 046354 84 IYE--GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-----EVISWTTMCTGLERN 156 (510)
Q Consensus 84 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a-----~~~~~~~l~~~~~~~ 156 (510)
..+ +++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.++.| ....|..++.++.+.
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~L 161 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 161 (449)
T ss_dssp ----------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 754 456789999999999999999888774 28888999999999999999999 667899999999999
Q ss_pred CchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 157 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++......
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 9999999999998 488999999999999999999988877665 444445578999999999999999999986433
Q ss_pred CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--------CCh
Q 046354 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--------KDV 308 (510)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~ 308 (510)
+-....|+-+-..+.+ -+.+++.+..+.|..-.. .+.
T Consensus 238 ~ah~~~ftel~il~~k-----------------------------------y~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 238 RAHMGMFTELAILYSK-----------------------------------FKPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp TCCHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-----------------------------------cCHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1222222222111111 344556666666654433 245
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
..|.-+...|...++++.|... |.++ ...-+...|..++.--....-+-+|..++- .. .|...+.|+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~ 351 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLM 351 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHH
Confidence 6899999999999999998874 4443 122234455555544333333334444332 21 2333455555
Q ss_pred HHhhcCChHHHHHHHhhCC
Q 046354 388 ILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~ 406 (510)
++...=+...+.++|++.-
T Consensus 352 ~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHGGGCCHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHHHcC
Confidence 5555555555555555543
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.2e-17 Score=153.64 Aligned_cols=348 Identities=11% Similarity=0.040 Sum_probs=159.3
Q ss_pred hcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 046354 37 RNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 116 (510)
+.|++++|.++++++.. | .+|+.|..++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++..+
T Consensus 15 ~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67889999999999943 4 59999999999999999999999764 577799999999999999999999888777
Q ss_pred ccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 117 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
+..+++.+.+.+ +.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...
T Consensus 89 k~~~~~~i~~~L---------------------i~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 89 KKARESYVETEL---------------------IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT---CC----------------CTTTHHHH
T ss_pred HhCccchhHHHH---------------------HHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 654444444444 445566667777777765 47778999999999999999999999
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhh
Q 046354 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276 (510)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (510)
|..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|
T Consensus 145 Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC-------------------------- 187 (449)
T 1b89_A 145 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC-------------------------- 187 (449)
T ss_dssp HHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH--------------------------
T ss_pred HHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH--------------------------
Confidence 9988 48999999999999999999999988 2567777777776
Q ss_pred hhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
...|+++.|......+. .++.....++..|.+.|++++|..+++...... +.....|+.+..++++-
T Consensus 188 -----------v~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 188 -----------VDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp -----------HHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred -----------HHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 88889999988777765 344445568899999999999999999887543 44445677776666643
Q ss_pred --CcHHHHHHHHHHHHHhhCCCC------CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------------CCcHHHH
Q 046354 357 --GLVEKGRKTFNLMSRAYGFKP------RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------------ERDHVVL 415 (510)
Q Consensus 357 --g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~p~~~~~ 415 (510)
++..+.++.|. .+-+++| +...|.-++..|...++++.|....-+-+.. ..+...|
T Consensus 255 ~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~ely 331 (449)
T 1b89_A 255 KPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 331 (449)
T ss_dssp CHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred CHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHH
Confidence 34444444443 3325555 5788999999999999999988766554322 2244555
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-..+..|... ...+..-+-..+ .|.- -+...+..+.+.|...-...++..+.
T Consensus 332 Ykai~fyl~~--~p~~l~~ll~~l--~~~l--d~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 332 YRAIQFYLEF--KPLLLNDLLMVL--SPRL--DHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHHH--CGGGHHHHHHHH--GGGC--CHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHhc--CHHHHHHHHHHH--Hhcc--CcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5555555421 122222222222 1110 02334444566666666666665555
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.4e-17 Score=157.45 Aligned_cols=363 Identities=9% Similarity=-0.048 Sum_probs=204.1
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-----------C-ChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCC
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE-----------G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKN 121 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 121 (510)
....||.|...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+. .++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888888888888877632 2 2357888889999999999999888877653 010
Q ss_pred hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH--hcCchHHHHHHHhhCC---CCChhHHHHHHHH---HHhcCCHHHH
Q 046354 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMP---NKDIVAWNAMITA---YVDAGNMAQA 193 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~li~~---~~~~g~~~~A 193 (510)
. ...+ ...++.....++. ..+++++|.+.|++.. +.++..+..+..+ +...|+.++|
T Consensus 130 ~-------------~~~~--~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 130 P-------------YRIE--SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp S-------------SCCC--CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred c-------------cchh--hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 0 0000 1112222222222 2356778888887766 3344445444444 3345666667
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHh
Q 046354 194 SELFNLMPQ---RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266 (510)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (510)
++.+++..+ .+..++..+...+.. .+++++|.+.+++.....
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~------------------------------- 243 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA------------------------------- 243 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------------------------------
Confidence 766665543 344455555444443 355667777777665422
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhc-------------------CCh
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNH-------------------GHG 324 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~-------------------g~~ 324 (510)
+....++..+...| ...|++++|...|++..+ | +..++..+...|... +..
T Consensus 244 --~~~~~~~~~lg~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 244 --PGVTDVLRSAAKFY-----RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316 (472)
T ss_dssp --SSCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred --ccHHHHHHHHHHHH-----HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Confidence 22333344444455 677777777777776654 2 334555554444321 234
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc----hhHhHHh-HHhhcCChHHHH
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE----HYSCLAD-ILRRAGQVKEAM 399 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~ 399 (510)
+.|...++...+.. +.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|++++|+
T Consensus 317 ~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 317 GHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 56666676666642 444556777777777788888888888777653 23221 1222222 223567778888
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
..|++..+..|+..... +....+..++++.++.+|+++.++..++.+|...|++++|++.|++..+--+..
T Consensus 393 ~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 77777765666543322 223445566777778889999999999999999999999999999888434444
Q ss_pred cc-eeEE
Q 046354 480 AS-FSQI 485 (510)
Q Consensus 480 p~-~~~~ 485 (510)
|+ .+|+
T Consensus 464 p~a~~~~ 470 (472)
T 4g1t_A 464 PSASSWN 470 (472)
T ss_dssp -------
T ss_pred CcHhhcC
Confidence 43 3454
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=161.32 Aligned_cols=159 Identities=13% Similarity=-0.020 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..++..++.+|
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATL 257 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 444577788888899999999888875311 15678888888888889999999999888874 344677888888899
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS------------SSGAYVLSANVH 456 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~ 456 (510)
.+.|++++|...++++.+..| +..++..+...|...|++++|...|++++++.|+ +...+..++.++
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 999999999999988876666 4678888888888999999999999999877776 356688888889
Q ss_pred HHcCCChHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKK 471 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~ 471 (510)
...|+.+.|.++.++
T Consensus 338 ~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 338 SLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHh
Confidence 999998888877653
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=9.2e-18 Score=157.55 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=149.1
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-----------hhHHHHHHhc
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-----------ITFVGVLSDC 353 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~ 353 (510)
...|++++|...|++..+ .+..+|..+...|...|++++|...|+++.+.. |+. ..+..+...+
T Consensus 110 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHH
Confidence 555666666666655543 346688999999999999999999999998753 332 2233457788
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...|++++|..+++++.+.....+++.++..++..|.+.|++++|...++++.+..| +..+|..+...|...|++++|.
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998622222678899999999999999999999999886666 6779999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..|+++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998884
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.3e-15 Score=151.31 Aligned_cols=381 Identities=9% Similarity=0.051 Sum_probs=265.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC----ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR----NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 99 (510)
++.--...+++|+..|.+.+|+++++++.-... +...-+.|+.+..+. +.....+..+....-+ ..-+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334445566777777777777777777763311 223444455555554 3344444444433222 33466667
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 179 (510)
...|.+++|..+|++... ++. ..+. .+...+++++|.++.++. .++.+|..
T Consensus 1060 i~lglyEEAf~IYkKa~~--~~~----------------------A~~V---Lie~i~nldrAiE~Aerv--n~p~vWsq 1110 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--NTS----------------------AVQV---LIEHIGNLDRAYEFAERC--NEPAVWSQ 1110 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--HHH----------------------HHHH---HHHHHhhHHHHHHHHHhc--CCHHHHHH
Confidence 777888888888877643 110 0111 122567788888888766 34667888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH
Q 046354 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 259 (510)
+..++...|++++|...|.+. .|...|..++.++.+.|++++|.+++...++..-.|...+ .+..++.+.......
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHH
Confidence 888888888888888888665 5667777888888888888888888887776542222222 344444444322222
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 339 (510)
.... -.++...+..+...+ ...|++++|...|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1187 e~fI----~~~n~ad~~~iGd~l-----e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1187 EEFI----NGPNNAHIQQVGDRC-----YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HHHH----hCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 2221 133445555677777 8999999999999985 47999999999999999999999875
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGAL 418 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 418 (510)
.+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++......|. ...|..|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 3558899999999999999998876543 2346667778999999999999999999999877663 3466666
Q ss_pred HHHHHh--hCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCChHHHH
Q 046354 419 LGACRL--HGDVRMADYIGERLIELQP-----SSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 419 ~~~~~~--~~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
...|.+ -++..++.+.|..-....| .+...|..+..+|.+.|+|+.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666655 4678888888887666655 566779999999999999999983
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=8.6e-16 Score=151.57 Aligned_cols=381 Identities=13% Similarity=0.085 Sum_probs=256.6
Q ss_pred HHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh
Q 046354 48 FRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123 (510)
Q Consensus 48 ~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 123 (510)
|+...+..| +...|..++.. .+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|++.....|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 344444556 67789888884 789999999999999966 3 456799999999999999999999999999878877
Q ss_pred hHHHHHHHH-HhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHHHHHHHHHHh---------c
Q 046354 124 SWTTVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAWNAMITAYVD---------A 187 (510)
Q Consensus 124 ~~~~ll~~~-~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~---------~ 187 (510)
.|...+... ...|+.+.+. +.+.++|+... .++...|...+....+ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~-----------------~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYK-----------------EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHH-----------------HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHHccchhhHH-----------------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 777666432 2344443321 11222333321 2456677777776554 7
Q ss_pred CCHHHHHHHHhhCCC-CCh---hhHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCCHh
Q 046354 188 GNMAQASELFNLMPQ-RNV---WTWNAMIDRY-------------ARNGPEGAAMKLLNLMF------QSR---FMPNET 241 (510)
Q Consensus 188 g~~~~A~~~~~~~~~-~~~---~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~g---~~p~~~ 241 (510)
|++++|..+|++..+ |.. ..|....... .+.++++.|..+++++. +.. ++|+..
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 889999999998776 432 2333322211 12334555555555421 111 122210
Q ss_pred -hHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh----hhHHHHhcccCC---CChhhHHH
Q 046354 242 -TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLEA---KDVVSWTA 313 (510)
Q Consensus 242 -~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~a~~~~~~~~~---~~~~~~~~ 313 (510)
..... ...|...+.... ......++. ..+..+|++... .+...|..
T Consensus 224 ~~~~~~-------------------------~~~w~~~~~~e~-~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~ 277 (530)
T 2ooe_A 224 PQEAQQ-------------------------VDMWKKYIQWEK-SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277 (530)
T ss_dssp CCHHHH-------------------------HHHHHHHHHHHH-HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHH-------------------------HHHHHHHHHHHH-cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 00000 011111111100 000111222 355566666654 35678888
Q ss_pred HHHHHHh-------cCChh-------hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-
Q 046354 314 MILAYSN-------HGHGF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR- 378 (510)
Q Consensus 314 l~~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 378 (510)
++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+...|++++|..+|+++.+. .|+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~ 354 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDID 354 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSC
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccC
Confidence 8888775 79987 89999999886322334667888888888999999999999999863 554
Q ss_pred c-chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 379 A-EHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA-CRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 379 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+ ..|..++..+.+.|++++|.++|++..+..|. ...|...+.. +...|+.++|..+|+++++..|+++..+..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3 47888889999999999999999998866553 3333333322 3458999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046354 456 HAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~~ 475 (510)
+.+.|+.++|+.+|++....
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHS
T ss_pred HHhCCCHhhHHHHHHHHHhc
Confidence 99999999999999988743
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=1.8e-15 Score=147.80 Aligned_cols=361 Identities=14% Similarity=0.097 Sum_probs=281.9
Q ss_pred HHHHHHhccccCCChhHHHHHHHHHHh----cCChhhHHHHHHhhcc-CChhhHHHHHHHHHc----CCChHHHHHHHHh
Q 046354 44 AEALFRAMPESQRNIVAESAMIDGYVK----AGRVDEARKVFDEIYE-GNVYSWTSLISGYFK----ARQVDEGRRLFDR 114 (510)
Q Consensus 44 A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 114 (510)
+...++...+ ..+...+..|...|.. .+++++|...|+...+ .+...+..|...|.. .++.++|.+.|++
T Consensus 26 ~~~~~~~~a~-~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 26 NLEQLKQKAE-SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp CHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3455554444 2477788888888888 8999999999999865 466788889999988 8999999999999
Q ss_pred ccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh----cCchHHHHHHHhhCC-CCChhHHHHHHHHHHh---
Q 046354 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER----NAMTKLAREYFVQMP-NKDIVAWNAMITAYVD--- 186 (510)
Q Consensus 115 m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~--- 186 (510)
..+. .+.. .+..+...|.. .+++++|.+.|++.. ..++..+..+...|..
T Consensus 105 a~~~-~~~~---------------------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 105 AALK-GLPQ---------------------AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHT-TCHH---------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHC-CCHH---------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 8762 2222 23334445555 678999999998877 5567788888888887
Q ss_pred -cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHH
Q 046354 187 -AGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260 (510)
Q Consensus 187 -~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 260 (510)
.++.++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+.|. ...+..
T Consensus 163 ~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~--------------- 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLH--------------- 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH---------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHH---------------
Confidence 7899999999988765 577888889999988 8999999999999887652 111111
Q ss_pred HHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-CChhhHHHHHHHHHh----cCChhhHHHHHHHHH
Q 046354 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSN----HGHGFQVFRLFARML 335 (510)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 335 (510)
+...|. ......++.++|...|++..+ .+...+..+...|.. .+++++|+..|++..
T Consensus 225 -----------------lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 225 -----------------LADMYY-FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp -----------------HHHHHH-HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 111220 000347889999999998766 566677788888888 899999999999998
Q ss_pred HcCCCCCchhHHHHHHhcCcC-----CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCC
Q 046354 336 KSGTKPDEITFVGVLSDCSHA-----GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPP 407 (510)
Q Consensus 336 ~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 407 (510)
+.| +...+..+...+... ++.++|..++++..+. + ++..+..+...|...| ++++|.+.|++..+
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 765 344566666666655 8999999999999875 3 4567777888887766 78999999998874
Q ss_pred CCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 408 HERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 408 ~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
. .+...+..+...|.. .+++++|...|+++.+. .++..+..++.+|.. .++.++|..+|++..
T Consensus 360 ~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 360 K-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp T-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3 567788889999988 79999999999999875 357889999999998 899999999999988
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=1.9e-17 Score=155.53 Aligned_cols=252 Identities=13% Similarity=0.010 Sum_probs=197.0
Q ss_pred HHHhcCCHHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 183 AYVDAGNMAQASE-LFNLMPQ--R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 183 ~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
++...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. |+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~--------------- 96 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PK--------------- 96 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT---------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------
Confidence 3455689999998 8887654 2 35668899999999999999999999998753 22
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
+...+..+...+ ...|++++|...|++..+ .+..+|..+...|...|++++|...+
T Consensus 97 ----------------~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 97 ----------------HMEAWQYLGTTQ-----AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp ----------------CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHH-----HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222333444445 889999999999998765 46778999999999999999999999
Q ss_pred HHHHHcCCCCCch-hHHH---------------HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh
Q 046354 332 ARMLKSGTKPDEI-TFVG---------------VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395 (510)
Q Consensus 332 ~~m~~~g~~p~~~-~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (510)
+++.... |+.. .+.. .+..+...|++++|...++++.+.....++..++..++..+.+.|++
T Consensus 156 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 156 RDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp HHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 9999853 3332 2221 13333388999999999999987622222578889999999999999
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++|...++++.+..| +..++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...++++..
T Consensus 234 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999876666 5779999999999999999999999999999999999999999999999999999999998873
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.9e-15 Score=155.01 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=260.4
Q ss_pred CcccCCCChHHHHHHHhhcC-CCC-----hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChh
Q 046354 2 SQFGCTGKVKEATKLFDEMS-QPD-----PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 75 (510)
++|...|.+.+|+++++.+. .|+ ....+.++....+. +..+..+...+... .+ ...+...+...|.++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCCHH
Confidence 45778899999999999997 333 35566677766666 44555555555442 22 344778888899999
Q ss_pred hHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh--------hHHHHH
Q 046354 76 EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL--------EVISWT 147 (510)
Q Consensus 76 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a--------~~~~~~ 147 (510)
+|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++| +...|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHH
Confidence 99999999742 2222233322 678899999998877 3466777888888888888887 677788
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
.++.++.+.|++++|.+.+.... .+++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888888888888887765 344444556888888888888644443 3456667777888888888888888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
.+|... ..|..+ ...+ .+.|+++.|.+.+++.
T Consensus 1216 ~~Y~kA---------~ny~rL--------------------------------A~tL-----vkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRL--------------------------------ASTL-----VHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHhh---------hHHHHH--------------------------------HHHH-----HHhCCHHHHHHHHHHh--
Confidence 888875 133333 3334 6777777777777766
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSC 384 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 384 (510)
.+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.... +.+ ...+|.-
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTE 1319 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHH
Confidence 3456777777777777777777665543 233445566777777777777777777766653 232 3344544
Q ss_pred HHhHHhh--cCChHHHHHHHhhCCCCCC------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh------------cCCC
Q 046354 385 LADILRR--AGQVKEAMRVVSKMPPHER------DHVVLGALLGACRLHGDVRMADYIGERLIE------------LQPS 444 (510)
Q Consensus 385 l~~~~~~--~g~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~p~ 444 (510)
+..+|++ -++..++.+.|..-...+| +...|..+...|.+.|+++.|....-+-.. ..+.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 4444443 3455566666654443322 455677777777777777777632222111 1345
Q ss_pred CchhHHHHHHHHHHcC---------------CChHHHHHHH
Q 046354 445 SSGAYVLSANVHAARG---------------EWDEFAQVRK 470 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 470 (510)
++..|...+..|...+ +.+.+.+++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 5666666666666555 6666666665
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.8e-18 Score=158.29 Aligned_cols=271 Identities=11% Similarity=-0.022 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYAR 217 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (510)
..+......+...|++++|.++++++. +.+...+..+..++...|++++|...|+++.+ .+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344555666667777777777776665 33455666666677777777777777666544 345566666666777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHH
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 297 (510)
.|++++|...++++.... |+ +...+..+...
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~~~~~---------------- 132 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQ-------------------------------YEQLGSVNLQA---------------- 132 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TT-------------------------------TTTC-----------------------
T ss_pred cCCHHHHHHHHHHHHHhC--Cc-------------------------------cHHHHHHHhHH----------------
Confidence 777777777776665421 11 00000000000
Q ss_pred HHhcccCCCChhhHHHH-HH-HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCC
Q 046354 298 LAFERLEAKDVVSWTAM-IL-AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (510)
. ++......+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .
T Consensus 133 -----~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~ 202 (327)
T 3cv0_A 133 -----D--VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--R 202 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred -----H--HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C
Confidence 0 000011111 22 3667788999999999998863 446678888889999999999999999999875 3
Q ss_pred CCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------
Q 046354 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS---------- 444 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------- 444 (510)
+.+...+..++..+...|++++|...++++.+..| +..++..+...+...|++++|...++++++..|+
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 44677888999999999999999999999876666 5778999999999999999999999999999998
Q ss_pred --CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 445 --SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..+..++.++...|++++|..++++..
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 67789999999999999999999988554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-16 Score=143.54 Aligned_cols=250 Identities=8% Similarity=0.023 Sum_probs=197.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ--RN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++-....|++..|+..++.... |+ ......+..+|...|+++.|+..++.. -+|+..++..+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la--------- 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFA--------- 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHH---------
Confidence 4456778999999999988766 33 235566788999999999999766441 233333333333
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----C-ChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----K-DVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
..+ ...++.++|.+.++++.. | +...+..+...+...|++++|+..+
T Consensus 73 -----------------------~~~-----~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l 124 (291)
T 3mkr_A 73 -----------------------EYL-----ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124 (291)
T ss_dssp -----------------------HHH-----HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHH-----cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 333 788899999999998642 3 4567777889999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh---HhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY---SCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
++ +.+...+..++..+.+.|++++|.+.++.+.+. .|+.... ..++..+...|++++|..+|+++.+.
T Consensus 125 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 125 HQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp TT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 87 466778888999999999999999999999876 4654221 22334445569999999999999866
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH-HHHHHHHHHHhhcccc
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE-FAQVRKKMERRVKKVA 480 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~p 480 (510)
.| +...++.+..++...|++++|+..++++++.+|+++.++..++.++...|+.++ +.++++++.+..|..|
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 55 777999999999999999999999999999999999999999999999999986 5788887775444444
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=8e-17 Score=156.75 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=230.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhcccc---------CC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-------
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPES---------QR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE------- 86 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---------~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------- 86 (510)
....|+.|...+...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987553 23 356788999999999999999999988733
Q ss_pred ----CChhhHHHHHHHHHc--CCChHHHHHHHHhccccCCCh-hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCch
Q 046354 87 ----GNVYSWTSLISGYFK--ARQVDEGRRLFDRMPLKLKNV-VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159 (510)
Q Consensus 87 ----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 159 (510)
....++..+..++.. .+++++|...|++..+..|+. ..+..+..++. .+...++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~------------------~l~~~~~~ 191 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY------------------RLDNWPPS 191 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH------------------HHHHSCCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------------HhcCchHH
Confidence 122456555555544 457999999999998875553 33333332221 12334555
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 160 KLAREYFVQMP---NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 160 ~~a~~~~~~~~---~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
++|.+.+++.. +.+..++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|...++
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 66666666654 4455666666655554 4677889999987654 467789999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHh-hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---
Q 046354 230 LMFQSRFMPNETTCTSILTSC-EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--- 305 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--- 305 (510)
+..+. .|+......-+..+ ...... ..... ........ ...+..+.|...|++..+
T Consensus 272 ~al~~--~p~~~~~~~~lg~~y~~~~~~-------~~~~~------~~~~~~~~-----~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 272 KALEY--IPNNAYLHCQIGCCYRAKVFQ-------VMNLR------ENGMYGKR-----KLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHHHH-------HHHC------------CHH-----HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHH-------hhhHH------HHHHHHHH-----HHHhhHHHHHHHHHHHhhcCC
Confidence 99873 45433322222211 100000 00000 00000000 122345667777766544
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHH-hcCcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLS-DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
.+..++..+...|...|++++|...|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHH
Confidence 455688999999999999999999999998854333221 1222222 23467999999999999885 35553322
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
. +..+.+.+++++..+..| +..+|..+...|...|++++|.+.|+++++..|.+|.+..-+|
T Consensus 409 ~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 409 E---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp H---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred H---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2 223344455555443445 6779999999999999999999999999999999887765544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.1e-16 Score=147.48 Aligned_cols=261 Identities=8% Similarity=-0.037 Sum_probs=202.8
Q ss_pred ChhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHH
Q 046354 121 NVVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAY 184 (510)
Q Consensus 121 ~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 184 (510)
+...+..+...+...|+++.+ +...+..+...+...|++++|.+.++++. +.+..++..+..+|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344567777888888988887 56778889999999999999999999987 55678899999999
Q ss_pred HhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHH
Q 046354 185 VDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 261 (510)
...|++++|...++++.+ |+ ...+..+...+ |+.....
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~----------------- 140 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLN----------------- 140 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHH-----------------
Confidence 999999999999988765 22 22222221110 1100000
Q ss_pred HHHHhCCCcchhhhhhh-hh-hccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 262 LAIRLGFEQETSLTYKC-TC-HYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 262 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
.+ .. .+ ...|++++|...++++.+ .+...+..+...|...|++++|...++++.+
T Consensus 141 ---------------~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 141 ---------------VQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp --------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 01 00 12 778899999999988765 3567899999999999999999999999988
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-----
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----- 411 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----- 411 (510)
.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++.+..|+
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 63 445678889999999999999999999999875 3446788899999999999999999999988655454
Q ss_pred --------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 412 --------HVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 412 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
...|..+...+...|++++|..++++.++..|
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 66889999999999999999999987764443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=164.93 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMP-------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 246 (510)
..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt- 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA- 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH-
Confidence 4589999999999999999999997753 38999999999999999999999999999999999888766555
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCCh-h
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG-F 325 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 325 (510)
+|.++++.|+. +
T Consensus 206 -------------------------------------------------------------------LI~glcK~G~~~e 218 (1134)
T 3spa_A 206 -------------------------------------------------------------------ALQCMGRQDQDAG 218 (1134)
T ss_dssp -------------------------------------------------------------------HHHHHHHHTCCHH
T ss_pred -------------------------------------------------------------------HHHHHHhCCCcHH
Confidence 45567787874 7
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC------cchhHhHHhHHhhcC
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR------AEHYSCLADILRRAG 393 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 393 (510)
+|.++|++|.+.|+.||..+|++++.++.+ +..++..+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 219 ~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 899999999999999999999998865544 455555666644 45544 445556677777655
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=6.5e-16 Score=133.05 Aligned_cols=197 Identities=12% Similarity=-0.020 Sum_probs=157.5
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchh
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 345 (510)
+++...+..+...+ ...|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...
T Consensus 2 p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL-----YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHH-----HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 34555666667777 899999999999998776 356789999999999999999999999999863 445568
Q ss_pred HHHHHHhcCcC-----------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH
Q 046354 346 FVGVLSDCSHA-----------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414 (510)
Q Consensus 346 ~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (510)
+..+...+... |++++|...+++..+. .+.+...+..+..++...|++++|+..|++..+...+...
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 88888888888 9999999999999875 2335778889999999999999999999988754567778
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+...+...|++++|...|+++++.+|+++..+..++.++...|++++|+..+++.-
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-15 Score=133.04 Aligned_cols=226 Identities=15% Similarity=0.042 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
..+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|...+++..+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc------------
Confidence 4566667777777777777777765533 556667777777777777777777777664311 000
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
.+ +.. .....|..+...|...|++++|...|+
T Consensus 72 ----------------~~---------------------~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 103 (258)
T 3uq3_A 72 ----------------RA---------------------DYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQ 103 (258)
T ss_dssp ----------------TC---------------------CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------cc---------------------chH-----------HHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 000 013567788889999999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-c
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-D 411 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~ 411 (510)
+..+. .|+.. .+...|++++|...++.+... .+.+...+..++..+...|++++|...++++.+..| +
T Consensus 104 ~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 104 KSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 99884 45533 345568899999999998863 333567888899999999999999999999876656 6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+++..
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999887
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=158.23 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhh
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQS---RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (510)
..+||++|++|++.|+.++|.++|.+|.+. |+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-------------------------------------------- 162 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-------------------------------------------- 162 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--------------------------------------------
Confidence 368999999999999999999999888642 444
Q ss_pred ccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-HH
Q 046354 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-VE 360 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~ 360 (510)
||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.++++.|+ .+
T Consensus 163 ------------------------PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e 218 (1134)
T 3spa_A 163 ------------------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218 (1134)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHH
T ss_pred ------------------------CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHH
Confidence 45667788888999999999999999999999999999999999999999998 47
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
.|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+
T Consensus 219 ~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 219 TIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 899999999998 99999999999998887765555555543333
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=9.6e-15 Score=129.48 Aligned_cols=232 Identities=12% Similarity=-0.045 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--------hhhHHH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN--------VWTWNA 210 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~ 210 (510)
...+..+...+...|++++|.+.|+++. ..+..++..+..+|...|++++|...+++..+ |+ ..+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4567778889999999999999998876 46778899999999999999999999998875 22 578899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (510)
+...+...|++++|...|+++.... |+.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------------------------------- 112 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------------------------------------------------- 112 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------------------
Confidence 9999999999999999999986632 221
Q ss_pred cChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.
T Consensus 113 -------------------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 113 -------------------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 12334455666666666666531 2233456666666777777777777777776
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------C
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ------P 443 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 443 (510)
+. .+.++..+..++..+.+.|++++|...+++..+..| +...|..+...+...|++++|...++++++.. |
T Consensus 167 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p 244 (258)
T 3uq3_A 167 KR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 244 (258)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC
Confidence 64 233566777788888888888888888887765555 46678888888889999999999999998887 7
Q ss_pred CCchhHHHHHH
Q 046354 444 SSSGAYVLSAN 454 (510)
Q Consensus 444 ~~~~~~~~l~~ 454 (510)
++...+..+..
T Consensus 245 ~~~~~~~~l~~ 255 (258)
T 3uq3_A 245 SAREIDQLYYK 255 (258)
T ss_dssp THHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 76665555543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=9.9e-15 Score=130.80 Aligned_cols=174 Identities=7% Similarity=-0.121 Sum_probs=130.0
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|...|++... .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|..
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 344444444444444332 24567888999999999999999999999985 4665555555555667799999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.++..... .+++...+ .++..+...++.++|...+++..+..|+ ..++..+...|...|++++|...|++++
T Consensus 166 ~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 166 VLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888874 34444444 4777788888999999999998866553 5688889999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
+.+|++...+ +.++...|++++|++.+
T Consensus 243 ~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999875444 66788889999988775
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=2.1e-14 Score=128.56 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
..+|..+...|...|++++|...|++..+. .+.+...+..+...+...+++++|...++++.+. .+.+...+..+..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRAR 184 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 345666667777777777777777776654 1223344544441333344777777777777764 2234556666667
Q ss_pred HHhhcCC---hHHHHHHHhhCCCC---CCc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 388 ILRRAGQ---VKEAMRVVSKMPPH---ERD------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 388 ~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
++...|+ +++|...++++.+. .|+ ..+|..+...|...|++++|...++++++++|+++.....+..+
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 7766676 66666666655432 233 24677778888888999999999999999999888777777666
Q ss_pred HHHcC
Q 046354 456 HAARG 460 (510)
Q Consensus 456 ~~~~g 460 (510)
....+
T Consensus 265 ~~~~~ 269 (272)
T 3u4t_A 265 LEHHH 269 (272)
T ss_dssp -----
T ss_pred hcccc
Confidence 55443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.1e-13 Score=128.97 Aligned_cols=245 Identities=9% Similarity=0.065 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhhHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGN-MAQASELFNLMPQ---RNVWTWNAMIDR 214 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 214 (510)
...++..+...+...|++++|++.++++. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44555566666666777777777777665 3445566667777777775 7777777766654 345666777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
+...|++++|+..|++++... |
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld--P-------------------------------------------------------- 197 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD--A-------------------------------------------------------- 197 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--T--------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHHHHHhC--c--------------------------------------------------------
Confidence 777777777777776664421 1
Q ss_pred hHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc-CCcHHHH-----HHHHHH
Q 046354 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKG-----RKTFNL 368 (510)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~ 368 (510)
.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++| +..+++
T Consensus 198 -----------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 198 -----------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265 (382)
T ss_dssp -----------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 245677778888888999999999999998863 3455678888888877 5554666 477888
Q ss_pred HHHhhCCCCCcchhHhHHhHHhhcC--ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC---------CHHHHHHHHH
Q 046354 369 MSRAYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG---------DVRMADYIGE 436 (510)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~A~~~~~ 436 (510)
..+. -+-+...|..+..++...| ++++|.+.+.++ +..| +...+..++..|.+.| ..++|..+|+
T Consensus 266 Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 266 MIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 8764 2335678888888888888 689999988888 5555 5678888888888764 3589999999
Q ss_pred HH-HhcCCCCchhHHHHHHHHHHc
Q 046354 437 RL-IELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 437 ~~-~~~~p~~~~~~~~l~~~~~~~ 459 (510)
++ .+++|.....|..++..+...
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 99 899999988888888876653
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=3.1e-14 Score=125.82 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=173.8
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...+..+...+ ...|++++|...|+++.+ .+...|..+...|...|++++|...++++.+.. +.+...+..
T Consensus 37 ~~~~~~~a~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGY-----LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHH-----HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHH
Confidence 45566677777 889999999999998765 456788999999999999999999999998863 446678888
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
+...+...|++++|.++++++.+. +..| +...+..++..+...|++++|...++++.+..| +...+..+...+...|
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 899999999999999999999862 3445 567788899999999999999999999876666 5778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
++++|...++++++..|+++..+..++.++...|++++|.++++++.+..+..
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999887444433
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.9e-14 Score=126.35 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=157.3
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
....+..+...+ ...|++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 22 ~~~~~~~~a~~~-----~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRG-----SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHH-----HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 344455566666 889999999999998865 356788889999999999999999999998863 44667888
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
.+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 8889999999999999999999875 345677888999999999999999999999876655 6778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++++|...++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998874
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=6e-14 Score=117.38 Aligned_cols=166 Identities=15% Similarity=0.069 Sum_probs=146.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
++..|..+...|...|++++|+..|++..+.. +-+...+..+...+...|++++|...++..... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56678999999999999999999999999863 445568888899999999999999999999874 344567777888
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
..+...++++.|...+.+..+..| +...+..+...+...|++++|+..|+++++.+|+++.++..++.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 899999999999999998876666 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 046354 466 AQVRKKMERR 475 (510)
Q Consensus 466 ~~~~~~~~~~ 475 (510)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999987643
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=4.7e-14 Score=122.13 Aligned_cols=201 Identities=11% Similarity=-0.000 Sum_probs=171.8
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
+...+..+...+ ...|++++|...|++..+ .+...|..+...|...|++++|...++++.+.. +.+..++.
T Consensus 7 ~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEY-----MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 344556666666 889999999999998765 456789999999999999999999999998863 45667888
Q ss_pred HHHHhcCcC-CcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 348 GVLSDCSHA-GLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 348 ~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
.+...+... |++++|...++.+.+. +..| +...+..++..+...|++++|...++++.+..| +...+..+...+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 899999999 9999999999999873 3344 357788899999999999999999998876666 57788999999999
Q ss_pred hCCHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 425 HGDVRMADYIGERLIELQP-SSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
.|++++|...++++++..| +++..+..++..+...|+.++|..+++.+.+..+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 88888999999999999999999999988744443
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=6.2e-14 Score=120.60 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=136.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
++++..+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+. .|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~------- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY------- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc-------
Confidence 35667788888888999999999999988765 45677888888899999999999999888663 2332
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhc------
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH------ 321 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~------ 321 (510)
...|..+...+...
T Consensus 73 ------------------------------------------------------------~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 73 ------------------------------------------------------------LGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHTCSS
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHhhhhhhh
Confidence 22233333334444
Q ss_pred -----CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChH
Q 046354 322 -----GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 322 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (510)
|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++.+. . .++..+..+..+|...|+++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHH
T ss_pred hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHH
Confidence 88888888888888752 334557777778888888888888888888886 4 67778888888888889999
Q ss_pred HHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 397 EAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 397 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...+++..+..| +...+..+...+...|++++|...+++..
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 98888888876666 56677888888888889888888888764
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1e-12 Score=117.61 Aligned_cols=220 Identities=9% Similarity=-0.036 Sum_probs=159.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
++.++..+...|...|++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 445556666666666677776666665554 234556666666666 666777766666664432
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHh----cCC
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN----HGH 323 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 323 (510)
+..++..+...|.. .++
T Consensus 73 -----------------------------------------------------------~~~a~~~lg~~~~~g~~~~~~ 93 (273)
T 1ouv_A 73 -----------------------------------------------------------YSNGCHLLGNLYYSGQGVSQN 93 (273)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHTSSSCCC
T ss_pred -----------------------------------------------------------CHHHHHHHHHHHhCCCCcccC
Confidence 33445556666777 788
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCCh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQV 395 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 395 (510)
+++|+..|++..+.+ +...+..+...+.. .+++++|..++++..+. + ++..+..+...|.. .+++
T Consensus 94 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 94 TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCH
Confidence 888888888887764 55667777777776 88888888888888774 3 45666777777777 8888
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHH
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQ 467 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 467 (510)
++|...+++..+. .+...+..+...|.. .+++++|...++++.+..| +..+..++.+|.. .|++++|.+
T Consensus 167 ~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 167 KKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 8888888877633 345677778888888 8899999999998887765 5678888888888 889999999
Q ss_pred HHHHHH
Q 046354 468 VRKKME 473 (510)
Q Consensus 468 ~~~~~~ 473 (510)
++++..
T Consensus 244 ~~~~a~ 249 (273)
T 1ouv_A 244 NFKKGC 249 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998777
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=9.4e-14 Score=124.23 Aligned_cols=187 Identities=10% Similarity=-0.074 Sum_probs=146.2
Q ss_pred ccccChhhHHHHhcccCC--CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA--KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 361 (510)
...|++++|...|++..+ ++ ...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 48 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHH
Confidence 566666666666665544 22 2348888999999999999999999999863 4456788899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCC---HHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGD---VRMADYIGER 437 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 437 (510)
|...+++..+. .+.++..+..+...+...+++++|.+.++++.+..| +...+..+...+...|+ +++|...+++
T Consensus 127 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999999863 333566777777344445699999999999887767 46678888888888888 8889999999
Q ss_pred HHhcC---CCC-----chhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 438 LIELQ---PSS-----SGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 438 ~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
+++.. |+. ...|..++.+|...|++++|..++++...-.|
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 98665 442 14688899999999999999999998874333
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.7e-14 Score=126.70 Aligned_cols=170 Identities=9% Similarity=0.005 Sum_probs=136.1
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|...|++..+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 444555555555544432 345678888999999999999999999998864 4566788888899999999999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...+...|++++|...++++++..|
T Consensus 147 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999875 344677888999999999999999999998876655 577899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcC
Q 046354 444 SSSGAYVLSANVHAARG 460 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g 460 (510)
+++..+..++.+....|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 99888877766554433
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=2.2e-13 Score=130.98 Aligned_cols=378 Identities=10% Similarity=0.013 Sum_probs=236.3
Q ss_pred HHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCCh---hhHHHHHHhhccCChhhHHHHHHHHHcCC----
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV---DEARKVFDEIYEGNVYSWTSLISGYFKAR---- 103 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 103 (510)
+...+.+.|++++|...|++..+. .+...+..|...|...|+. ++|...|+...+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 566677889999999999988765 2445555566666777777 89999998887777777888877565555
Q ss_pred -ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHH
Q 046354 104 -QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMI 181 (510)
Q Consensus 104 -~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li 181 (510)
++++|...|++..+. .+...+..+...|...+..+.+ ..+.+.+.... ..++.....+.
T Consensus 88 ~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~------------------~~a~~~~~~a~~~g~~~a~~~Lg 148 (452)
T 3e4b_A 88 AEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPN------------------VNAQQQISQWQAAGYPEAGLAQV 148 (452)
T ss_dssp HHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTT------------------CCHHHHHHHHHHHTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHCCCHHHHHHHH
Confidence 778899999888774 2333555566555554443321 11222222222 24556777788
Q ss_pred HHHHhcCC----HHHHHHHHhhCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 182 TAYVDAGN----MAQASELFNLMPQRNVWTWNAMIDRYARNG---PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 182 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
..|...+. .+.+..+++.....++..+..|...|...| +.++|++.|++..+.|.......++
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~---------- 218 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDS---------- 218 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHH----------
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHH----------
Confidence 88888874 555666677767667778999999999999 9999999999998877433221111
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH-H--HhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA-Y--SNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~ 331 (510)
+..+|. ......++.++|...|++....+...+..+... | ...+++++|+..|
T Consensus 219 -----------------------Lg~~y~-~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 219 -----------------------VARVLG-DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp -----------------------HHHHHT-CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred -----------------------HHHHHh-CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 111220 000334789999999998884456677777776 4 4688999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHh
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVS 403 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 403 (510)
++..+.| +...+..+...|.. ..++++|..+|++.. +.++..+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9999876 45556666655552 239999999998875 3466777778877766 348999999999
Q ss_pred hCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HHcCCChHHHHHHHHHH
Q 046354 404 KMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVH--AARGEWDEFAQVRKKME 473 (510)
Q Consensus 404 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 473 (510)
+..+. -+......|...|.. ..|.++|...|+++.+..+.. ....+..+. ...++..+|.++.++-+
T Consensus 347 ~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARN-GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88733 245556667777664 459999999999998765543 333333332 22335666777776655
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.8e-13 Score=120.94 Aligned_cols=206 Identities=11% Similarity=0.033 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|..+...+...|++++|...|+++.+.. |+ +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~la~~~-- 81 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS-------------------------------SADAHAALAVVF-- 81 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-------------------------------hHHHHHHHHHHH--
Confidence 4567777788888888888888888876532 21 222333334444
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 360 (510)
...|++++|...|++..+ .+...|..+...|...|++++|..+++++...+..| +...+..+...+...|+++
T Consensus 82 ---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 82 ---QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 777888888888877654 356788889999999999999999999998733445 4457788888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...++++.+. .+.+...+..++..+...|++++|...++++.+..| +...+..+...+...|++++|.+.+++++
T Consensus 159 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 159 QAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999875 244677888999999999999999999999876655 66688888889999999999999999999
Q ss_pred hcCCCCchhHH
Q 046354 440 ELQPSSSGAYV 450 (510)
Q Consensus 440 ~~~p~~~~~~~ 450 (510)
+..|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99999876544
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=4.9e-14 Score=131.28 Aligned_cols=226 Identities=8% Similarity=-0.035 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|+.+...+.+.|++++|+..+++++.. .|+ +...+..+...+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~-------------------------------~~~a~~~~g~~l-- 141 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA-------------------------------NYTVWHFRRVLL-- 141 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc-------------------------------CHHHHHHHHHHH--
Confidence 456777777888888888888888887663 232 223333344444
Q ss_pred cccccccC-hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLD-VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
...|+ +++|...|++... .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|+++
T Consensus 142 ---~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 142 ---KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp ---HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred ---HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChH
Confidence 66775 8888888887765 456789999999999999999999999999863 445678999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-cCChHHH-----HHHHhhCCCCCC-cHHHHHHHHHHHHhhC--CHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRR-AGQVKEA-----MRVVSKMPPHER-DHVVLGALLGACRLHG--DVRMA 431 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~A 431 (510)
+|+..++++.+. -+-+...|+.+..++.+ .|..++| +..+++.....| +...|..+...+...| ++++|
T Consensus 218 eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 218 NELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp THHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH
Confidence 999999999975 23467889999999998 6666888 478888876777 6678999998888887 68999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcC--------C-ChHHHHHHHHH
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARG--------E-WDEFAQVRKKM 472 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~ 472 (510)
...++++ +.+|+++..+..++.+|.+.| + .++|+++++++
T Consensus 296 ~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 296 LNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 9999998 899999999999999999975 2 58999999988
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=9.4e-13 Score=117.80 Aligned_cols=225 Identities=10% Similarity=-0.017 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ-RNVWTWNAMIDRYA 216 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 216 (510)
+.++..+...+...|++++|.+.|++.. +.+...+..+...|.. .|++++|...|++..+ .+...+..+...|.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4566777888889999999999999887 4566788889999999 9999999999998765 57788899999999
Q ss_pred h----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 217 R----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 217 ~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
. .+++++|...|++..+.+
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~--------------------------------------------------------- 108 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK--------------------------------------------------------- 108 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---------------------------------------------------------
T ss_pred CCCCcccCHHHHHHHHHHHHHcC---------------------------------------------------------
Confidence 9 999999999999886543
Q ss_pred hhhHHHHhcccCCCChhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHH
Q 046354 293 VNSARLAFERLEAKDVVSWTAMILAYSN----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRK 364 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 364 (510)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..
T Consensus 109 --------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 109 --------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp --------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred --------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 22345556666777 788999999999888865 44566666666665 889999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHH
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGE 436 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~ 436 (510)
++++..+. + ++..+..+...|.. .+++++|...+++..+..| ...+..+...|.. .+++++|...|+
T Consensus 172 ~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 172 SYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99998874 2 45677788888888 9999999999998875544 6677888888888 899999999999
Q ss_pred HHHhcCCCCc
Q 046354 437 RLIELQPSSS 446 (510)
Q Consensus 437 ~~~~~~p~~~ 446 (510)
++.+..|+++
T Consensus 247 ~a~~~~~~~a 256 (273)
T 1ouv_A 247 KGCKLGAKGA 256 (273)
T ss_dssp HHHHHTCHHH
T ss_pred HHHHcCCHHH
Confidence 9999888754
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=9.4e-14 Score=132.38 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC-h----hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChh
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP--NKD-I----VAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVW 206 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~ 206 (510)
...+..+...+...|++++|.+.|+++. .|+ . .++..+..+|...|++++|...|++..+ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444556677788888888888888776 333 2 3677778888888888888888776543 2345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (510)
++..+...|...|++++|...+++...... ..+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~------------------- 160 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR----------------------------QLG------------------- 160 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHT-------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------------------------Hhh-------------------
Confidence 677778888888888888888877644100 000
Q ss_pred cccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHHc----CCCC-Cch
Q 046354 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH-----------------GFQVFRLFARMLKS----GTKP-DEI 344 (510)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~ 344 (510)
+. .....++..+...|...|+ +++|...+++..+. +..| ...
T Consensus 161 -----~~-----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 161 -----DR-----------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp -----CH-----------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----ch-----------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 0012245555566666666 66676666665432 1111 123
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHV 413 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~ 413 (510)
++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..+..| ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677777888888888888777654211111 22667788888888888888888877654322 245
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|..++++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77788888889999999999999988654432 3368888999999999999999998876
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=131.68 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWNAMIDRYARNGP--------------------EGAA 224 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A 224 (510)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566677778888888888877776654 22 3467778888888888 6777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 225 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
...+++... ++....
T Consensus 167 ~~~~~~al~-----------------------------------------------------------------~~~~~~ 181 (406)
T 3sf4_A 167 VDFYEENLS-----------------------------------------------------------------LVTALG 181 (406)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------HHHHTT
T ss_pred HHHHHHHHH-----------------------------------------------------------------HHHhcc
Confidence 666665533 111111
Q ss_pred C--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 305 A--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 305 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 1 0123566777788888888888888888765310 111 12677777888889999999999888775421112
Q ss_pred C----cchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---
Q 046354 378 R----AEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERD----HVVLGALLGACRLHGDVRMADYIGERLIELQP--- 443 (510)
Q Consensus 378 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--- 443 (510)
+ ..++..+...|...|++++|...+++..+. .++ ..++..+...|...|++++|...++++++..+
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 456778888999999999999998877543 111 45778888899999999999999999986533
Q ss_pred ---CCchhHHHHHHHHHHcCCChH
Q 046354 444 ---SSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 444 ---~~~~~~~~l~~~~~~~g~~~~ 464 (510)
.....+..++.++...|+...
T Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 342 DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcchhHHHHHHHHHHHHhhHhHH
Confidence 224458888999999987644
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=6.8e-13 Score=114.73 Aligned_cols=208 Identities=13% Similarity=0.013 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|..+...+...|++++|...++++.+.. |+ +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~l~~~~-- 52 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK-------------------------------NELAWLVRAEIY-- 52 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc-------------------------------chHHHHHHHHHH--
Confidence 4456666666666677777766666665422 11 111222233333
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNH-GHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLV 359 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 359 (510)
...|++++|...+++... .+..++..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++
T Consensus 53 ---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 53 ---QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred ---HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 556666666666666543 3556788899999999 999999999999988333343 45788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
++|...++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +...+..+...+...|+.+.|...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999875 244578888999999999999999999998876544 566777777788899999999999999
Q ss_pred HHhcCCCCchhHHHH
Q 046354 438 LIELQPSSSGAYVLS 452 (510)
Q Consensus 438 ~~~~~p~~~~~~~~l 452 (510)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999987665543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.4e-13 Score=127.04 Aligned_cols=265 Identities=12% Similarity=0.021 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC--CCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP--NKD-----IVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 208 (510)
.+......+...|++++|...++++. .|+ ...+..+...|...|++++|...+++..+ ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445667778888888888888776 333 25667777888888888888888776543 124567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
..+...+...|++++|...+++..+.... ++...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------------------- 121 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------------------- 121 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------------------------------------
Confidence 77777888888888888888776442100 00000
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc----CCCCC-
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------GFQVFRLFARMLKS----GTKPD- 342 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~- 342 (510)
...++..+...|...|+ +++|...+++.... +..|.
T Consensus 122 -------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~ 182 (338)
T 3ro2_A 122 -------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ 182 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 01234445555555555 66666666655432 11111
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------c
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------D 411 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~ 411 (510)
...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++..+..| .
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 235666677777888888888888877653211111 23677788888899999999988887653311 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..|.. ...+..++.+|...|++++|..++++..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4577788888999999999999999998665432 3357889999999999999999999876
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=9.3e-13 Score=126.55 Aligned_cols=309 Identities=10% Similarity=0.015 Sum_probs=149.7
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCChhhHHHHHHHHHhcC-----
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNM---AQASELFNLMPQRNVWTWNAMIDRYARNG----- 219 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~----- 219 (510)
+...+.+.|++++|.++|++.. ..++..+..+...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 5666778889999999998876 34555666677777778888 89999998888777777888877666655
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc----Chhh
Q 046354 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL----DVNS 295 (510)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~ 295 (510)
++++|...|++..+.|...-...+..+........................++.....+...| ...+ ..+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y-----~~~~~~~~~~~~ 163 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY-----RTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH-----HHHTCGGGGHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH-----HcCCCcccCHHH
Confidence 778999999998887755433333333322222111111111111111111233333344444 3333 3333
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC----CcHHHHHHHHHH
Q 046354 296 ARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA----GLVEKGRKTFNL 368 (510)
Q Consensus 296 a~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~ 368 (510)
+..+++.....++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++|..+|+.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 444455444445556666666666666 6666666666666654 33333333344444332 456666666665
Q ss_pred HHHhhCCCCCcchhHhHHhH-H--hhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHh
Q 046354 369 MSRAYGFKPRAEHYSCLADI-L--RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG-----DVRMADYIGERLIE 440 (510)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~ 440 (510)
.. +-++..+..|... + ...|++++|.+.|++..+ ..+...+..|...|. .| ++++|...|+++.
T Consensus 243 aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 243 IA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred Hc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 54 1233444444444 2 345566666666655441 124444445554444 33 5666666666554
Q ss_pred cCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
|.++..+..|+.+|.. ..+.++|.++|++..
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 5555555556555554 225555666655544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=129.76 Aligned_cols=265 Identities=13% Similarity=0.024 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC--CC-C----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP--NK-D----IVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 208 (510)
.+......+...|++++|...|+++. .| + ..++..+...|...|++++|...+++... ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34455666677777777777777765 23 2 24566677777777777777777665432 123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
..+...+...|++++|...+++..+.... ++..
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------------- 124 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------------------------- 124 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc----------------------------------------------
Confidence 66777777777777777777766431000 0000
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc----CCCCC-
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------GFQVFRLFARMLKS----GTKPD- 342 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~- 342 (510)
....++..+...|...|+ +++|...+++.... +..|.
T Consensus 125 ------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 186 (406)
T 3sf4_A 125 ------------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186 (406)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 012245666666777777 78888887776542 11111
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC---c----
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER---D---- 411 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~---- 411 (510)
..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+..| +
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 236777888889999999999999998764222222 23778899999999999999999988754322 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+++++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577888899999999999999999999665443 4468899999999999999999999876
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2.4e-13 Score=121.66 Aligned_cols=226 Identities=13% Similarity=-0.013 Sum_probs=178.3
Q ss_pred cccCCCChHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCCh
Q 046354 3 QFGCTGKVKEATKLFDEMSQP-------DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 74 (510)
.+...|++++|+..|+.+.+. +..+|..+...+...|++++|...|+++.+..| +...+..+...+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 356779999999999998741 456788899999999999999999999998877 578899999999999999
Q ss_pred hhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 046354 75 DEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151 (510)
Q Consensus 75 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~ 151 (510)
++|.+.|++..+ .+..++..+...|...|++++|...|+++.+..|+.......+ .
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------~ 152 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL---------------------Y 152 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------------H
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH---------------------H
Confidence 999999999965 3577899999999999999999999999988756544322222 1
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhcCCh
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN-------VWTWNAMIDRYARNGPE 221 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~ 221 (510)
.+...|++++|...++... +++...+ .++..+...++.++|...++.....+ ..+|..+...+.+.|++
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 2245578889998887665 3444444 47777888899999999999887622 47789999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhh
Q 046354 222 GAAMKLLNLMFQSRFMP-NETTCTSILTSCEG 252 (510)
Q Consensus 222 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 252 (510)
++|...|++..... | +...+...+....+
T Consensus 232 ~~A~~~~~~al~~~--p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHHHHHHTTC--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--chhHHHHHHHHHHHHH
Confidence 99999999998753 5 33444333333333
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=2.1e-13 Score=131.92 Aligned_cols=194 Identities=9% Similarity=0.017 Sum_probs=170.5
Q ss_pred chhhhhhhhhhccccccccccCh-hhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDV-NSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
+...+..+...+ ...|++ ++|...|++..+ .+...|..+...|...|++++|...|++..+. .|+...+
T Consensus 101 ~a~~~~~lg~~~-----~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 173 (474)
T 4abn_A 101 EAQALMLKGKAL-----NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSL 173 (474)
T ss_dssp CHHHHHHHHHHH-----TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHH
T ss_pred hHHHHHHHHHHH-----HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHH
Confidence 445556666666 889999 999999998865 35678999999999999999999999999985 5777888
Q ss_pred HHHHHhcCcC---------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc--------CChHHHHHHHhhCCCCC
Q 046354 347 VGVLSDCSHA---------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA--------GQVKEAMRVVSKMPPHE 409 (510)
Q Consensus 347 ~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~ 409 (510)
..+...+... |++++|...++++.+. .+.+...+..+..+|... |++++|...|++..+..
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999 9999999999999975 244678889999999998 99999999999998766
Q ss_pred C----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 410 R----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 410 p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
| +...|..+...|...|++++|...|+++++++|+++..+..++.++...|++++|++.+.+++
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6 677999999999999999999999999999999999999999999999999999997665443
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=6e-11 Score=117.93 Aligned_cols=96 Identities=8% Similarity=0.018 Sum_probs=66.7
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCC---hhhHHHHHHhhcc-----CChhhH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGR---VDEARKVFDEIYE-----GNVYSW 92 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~-----~~~~~~ 92 (510)
+-|...|..++..+.+.+.++.+..+|+.+....| ....|...+..-.+.++ ++.+..+|+..+. |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 34777888888888888888888888888888766 45667777777777777 8888888888843 666777
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHhccc
Q 046354 93 TSLISGYFKARQV--------DEGRRLFDRMPL 117 (510)
Q Consensus 93 ~~li~~~~~~g~~--------~~A~~~~~~m~~ 117 (510)
...+....+.++. +...++|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~ 175 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVD 175 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 7777665554443 233466665443
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1.4e-12 Score=131.15 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=148.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHh
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSC 384 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 384 (510)
+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.+.|+++.+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3467899999999999999999999999985 454 568899999999999999999999999875 45 5788999
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
+..+|.+.|++++|++.|++..+..| +...|..+...|...|++++|+..|+++++++|+++..+..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999987777 57799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=6.3e-13 Score=111.12 Aligned_cols=169 Identities=11% Similarity=0.004 Sum_probs=146.6
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.++.++..+...| ...|++++|...|++..+ .+..+|..+..+|...|++++|...++...... +.+...+
T Consensus 3 e~~~iy~~lG~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKK-----RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAY 76 (184)
T ss_dssp -CHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred cHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHH
Confidence 3566788888888 999999999999998876 456789999999999999999999999998863 4445577
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..+...+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|++..+..| +..+|..+...|.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 77778888999999999999999874 344677888999999999999999999999887777 677899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 046354 426 GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~ 446 (510)
|++++|...|+++++++|+++
T Consensus 155 g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999764
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.3e-10 Score=115.64 Aligned_cols=395 Identities=11% Similarity=0.099 Sum_probs=256.5
Q ss_pred cCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCC---hhhHHHHHHhccccC---CChhHHHHHHHHHHhcCCh-
Q 046354 5 GCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHD---LPKAEALFRAMPESQ---RNIVAESAMIDGYVKAGRV- 74 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~- 74 (510)
.+.+.++.+..+|+.+. +.+...|..-+....+.|+ ++.+..+|++..... |++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 34678999999999997 5567888888998889998 999999999999887 8999999888877776654
Q ss_pred -------hhHHHHHHhhc------cC-ChhhHHHHHHHHHc---------CCChHHHHHHHHhccccCCCh---hhHHHH
Q 046354 75 -------DEARKVFDEIY------EG-NVYSWTSLISGYFK---------ARQVDEGRRLFDRMPLKLKNV---VSWTTV 128 (510)
Q Consensus 75 -------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~---~~~~~l 128 (510)
+...++|+... .+ +...|...+..... .++++.+..+|++.... |.. .+|...
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y 235 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRY 235 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 33447777653 33 33578888776543 34578899999999865 322 233222
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh-------CCC--------------C--C------hhHHHH
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ-------MPN--------------K--D------IVAWNA 179 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~--------------~--~------~~~~~~ 179 (510)
..--...+.. .+ ..++. ....+++.|...+.. +.. | + ...|..
T Consensus 236 ~~fe~~~~~~-~a-----~~~~~--e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~ 307 (679)
T 4e6h_A 236 TQWEQDVNQL-TA-----RRHIG--ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLE 307 (679)
T ss_dssp HHHHHHHCTT-TH-----HHHHH--HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHH
T ss_pred HHHHHhcCcc-hH-----HHHHH--HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHH
Confidence 1111111111 00 00000 011122333333322 110 1 0 134555
Q ss_pred HHHHHHhcC-------CHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHhhHHHHHH
Q 046354 180 MITAYVDAG-------NMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM-KLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 180 li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
.+..--..+ ..+++..+|++... .+...|-..+..+...|+.++|. ++|+..... .|..
T Consensus 308 yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s-------- 377 (679)
T 4e6h_A 308 WIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNS-------- 377 (679)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTC--------
T ss_pred HHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCC--------
Confidence 554332222 12334556666554 35667777777777888888886 888887652 2322
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-------------C---------
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-------------K--------- 306 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-------------~--------- 306 (510)
..++...+... -..|+++.|..+|+++.. |
T Consensus 378 -----------------------~~Lwl~~a~~e-----e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 378 -----------------------AVLAFSLSEQY-----ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp -----------------------HHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 22222223333 566788888888887654 2
Q ss_pred ---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc-CCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 307 ---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 307 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
....|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|.++|+...+. ++.++..+
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w 507 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHH
Confidence 1236888888888899999999999999875112223344332222222 45699999999999986 44566677
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
...++.....|+.+.|..+|++.....| ....|...+..-.+.|+.+.+..+.+++.+..|+++..
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8888988899999999999999887655 34578888888889999999999999999999997543
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=1.7e-12 Score=123.60 Aligned_cols=205 Identities=10% Similarity=0.002 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC-----------------hHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTWNAMIDRYARNGP-----------------EGAAMKLL 228 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 228 (510)
.++..+...|...|++++|...+++..+ ....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4566777778888888888887776553 124567888888888999 77777766
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K 306 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~ 306 (510)
++..+. ...... .
T Consensus 207 ~~al~~-----------------------------------------------------------------~~~~~~~~~ 221 (411)
T 4a1s_A 207 QENLKL-----------------------------------------------------------------MRDLGDRGA 221 (411)
T ss_dssp HHHHHH-----------------------------------------------------------------HHHHTCHHH
T ss_pred HHHHHH-----------------------------------------------------------------HHHcCCHHH
Confidence 665321 111101 0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC---
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--- 378 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 378 (510)
...++..+...|...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+...-..+
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1235667777888888888888888887653110 11 126777788888999999999999888764211111
Q ss_pred -cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 379 -AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 379 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..++..+...|...|++++|...+++..+..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999988764311 2347788888999999999999999999877654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=9e-12 Score=113.45 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=146.3
Q ss_pred hhHHHHhcccCC---C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHH
Q 046354 294 NSARLAFERLEA---K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 294 ~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
++|..+|++... | +...|..++..+.+.|++++|..+|++..+ +.|+.. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999988765 3 455899999999999999999999999997 456543 78888888889999999999999
Q ss_pred HHHHhhCCCCCcchhHhHHhHHh-hcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---C
Q 046354 368 LMSRAYGFKPRAEHYSCLADILR-RAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL---Q 442 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 442 (510)
++.+. .+++...|...+.... ..|++++|..+|++..+..| +...|..++..+.+.|++++|..+|++++.. .
T Consensus 159 ~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 99863 2334455543333322 36999999999999876656 6778899999999999999999999999985 4
Q ss_pred CC-CchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 443 PS-SSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 443 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
|+ ....|..++..+.+.|+.++|..+++++.+..+..+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 43 556788899999999999999999998875555433
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.9e-12 Score=119.39 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWNAMIDRYARNGP--------------------EGAA 224 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A 224 (510)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34567777788888888888887776643 22 3467788888888888 7777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 225 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
...+++.... .....
T Consensus 163 ~~~~~~a~~~-----------------------------------------------------------------~~~~~ 177 (338)
T 3ro2_A 163 VDLYEENLSL-----------------------------------------------------------------VTALG 177 (338)
T ss_dssp HHHHHHHHHH-----------------------------------------------------------------HHHHT
T ss_pred HHHHHHHHHH-----------------------------------------------------------------HHhcC
Confidence 7776665321 00000
Q ss_pred C--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 305 A--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 305 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. .....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..++++..+...-.+
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 0 0123466667777888888888888877764310 111 22666777778888899999888888765421112
Q ss_pred C----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 378 R----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 378 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+ ..++..+...+...|++++|...+++..+..| ...++..+...+...|++++|...+++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2 45667788889999999999999887754311 2447778888999999999999999999977664
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.1e-11 Score=109.90 Aligned_cols=217 Identities=11% Similarity=0.037 Sum_probs=155.1
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHh-------cCCH-------HHHHHHHhhCCC---C-ChhhHHHHHHHHHhc
Q 046354 160 KLAREYFVQMP---NKDIVAWNAMITAYVD-------AGNM-------AQASELFNLMPQ---R-NVWTWNAMIDRYARN 218 (510)
Q Consensus 160 ~~a~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 218 (510)
+.|..+|+++. +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45566666655 4556667666666543 4664 677777766543 2 344667777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHH
Q 046354 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 298 (510)
|++++|..+|+++.+ +.|+
T Consensus 113 ~~~~~A~~~~~~al~--~~p~----------------------------------------------------------- 131 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDI----------------------------------------------------------- 131 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSS-----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHh--cccc-----------------------------------------------------------
Confidence 777777777777654 2221
Q ss_pred HhcccCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc-CcCCcHHHHHHHHHHHHHhhCCC
Q 046354 299 AFERLEAKDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC-SHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 299 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..+|+...+. .+
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p 200 (308)
T 2ond_A 132 --------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YG 200 (308)
T ss_dssp --------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HT
T ss_pred --------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 122 57777777888899999999999998753 33444444333322 2369999999999999875 24
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.++..+..++..+.+.|++++|..+|++.... .| ....|..++..+...|+.+.|..+++++++..|+++..
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 46788889999999999999999999988753 44 35688888998999999999999999999999986543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.4e-12 Score=107.51 Aligned_cols=163 Identities=14% Similarity=0.024 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 356667778888899999999888877642 345667778888888899999999999988874 34467778888889
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+...|++++|.+.++++.+..| +...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988775555 677888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 046354 468 VRKKMER 474 (510)
Q Consensus 468 ~~~~~~~ 474 (510)
++++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998873
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.1e-11 Score=116.75 Aligned_cols=294 Identities=7% Similarity=-0.003 Sum_probs=162.7
Q ss_pred HHhcCChhhHHHHHHhcccc------CCChhHHHHHHHH--HHhcCChhhHH-----------HHHHhhcc-C-Chh---
Q 046354 35 FLRNHDLPKAEALFRAMPES------QRNIVAESAMIDG--YVKAGRVDEAR-----------KVFDEIYE-G-NVY--- 90 (510)
Q Consensus 35 ~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~-~-~~~--- 90 (510)
+.+.+++++|..+++++.+. .++...|-.++.. ..-.++.+.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999888654 2233334444322 12223333443 55555422 1 111
Q ss_pred ---hHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 91 ---SWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 91 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
.+......+...|++++|...|++..+. .++..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------------- 140 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI----------------------------------------- 140 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----------------------------------------
Confidence 1222445566778888888888777653 12210
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....++..+..+|...|++++|...+++..+ + ...+++.+...|...|++++|...+++..+.
T Consensus 141 -------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 141 -------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0123455555566666666666555554432 1 2356778888888899999998888877541
Q ss_pred CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHH
Q 046354 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314 (510)
Q Consensus 235 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 314 (510)
.. +.++.. ....++..+
T Consensus 214 ~~----------------------------------------------------~~~~~~-----------~~~~~~~~l 230 (383)
T 3ulq_A 214 AE----------------------------------------------------AEKQPQ-----------LMGRTLYNI 230 (383)
T ss_dssp HH----------------------------------------------------HTTCHH-----------HHHHHHHHH
T ss_pred HH----------------------------------------------------HcCChH-----------HHHHHHHHH
Confidence 10 000000 011246667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc----CC-CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC---cchhHhHH
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKS----GT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR---AEHYSCLA 386 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 386 (510)
...|...|++++|...+++..+. +. +....++..+...+...|++++|...+++..+...-.++ ...+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888888888888877662 22 222345666777777777777777777776553111111 12234455
Q ss_pred hHHhhcCC---hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 387 DILRRAGQ---VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 387 ~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+...|+ +++|..++++..........+..+...|...|++++|...+++++
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555 555555555553111123344455555555555555555555555
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=6.1e-11 Score=111.69 Aligned_cols=286 Identities=10% Similarity=-0.093 Sum_probs=185.6
Q ss_pred cCCCChHHHHHHHhhcC------CCC--hhhHHHHHHH--HHhcCChhhHH-----------HHHHhccccCCChhHH--
Q 046354 5 GCTGKVKEATKLFDEMS------QPD--PVSCASMITV--FLRNHDLPKAE-----------ALFRAMPESQRNIVAE-- 61 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~------~~~--~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~~p~~~~~-- 61 (510)
.+.+++++|..+++++. +.| ...|-.++.. ..-.++++.+. +.++.+....++...+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46789999999999885 123 3334444332 22233444444 6777665432222222
Q ss_pred ----HHHHHHHHhcCChhhHHHHHHhhcc-----C----ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHH
Q 046354 62 ----SAMIDGYVKAGRVDEARKVFDEIYE-----G----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128 (510)
Q Consensus 62 ----~~li~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 128 (510)
......+...|++++|...++...+ + ...++..+...|...|+++.|...+++..+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------- 172 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI---------- 172 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 2255677889999999999999854 2 2357889999999999999999999988764
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhh
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-----NKDI----VAWNAMITAYVDAGNMAQASELFNL 199 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 199 (510)
+...++.......++..+...|...|++++|.+.+++.. .++. .++..+..+|...|++++|...|++
T Consensus 173 ---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 173 ---YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp ---HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111111122234567778888899999999999988876 2222 4788899999999999999999887
Q ss_pred CCC--------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Q 046354 200 MPQ--------R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 200 ~~~--------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 270 (510)
..+ | ...++..+...+.+.|++++|...+++....... .+.+.
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~ 301 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK----------------------------AGDVI 301 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HTCHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------cCCHH
Confidence 654 2 2456888999999999999999999987652100 00000
Q ss_pred chhhhhhhhhhccccccccccC---hhhHHHHhcccCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLD---VNSARLAFERLEAK--DVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
....+..+...+ ...|+ +++|...+++.... ....+..+...|...|++++|...+++..+
T Consensus 302 ~~~~~~~l~~~~-----~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLY-----LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHH-----TSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011112233333 55555 66666666665431 123455566666666666666666666554
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.5e-10 Score=108.69 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ-----R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
++..+..+|...|++++|...+++..+ + ...+++.+...|...|++++|...|++..+..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~---------- 212 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------- 212 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----------
Confidence 455566666666666666665555432 1 23567788888889999999998888775410
Q ss_pred HHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChh
Q 046354 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (510)
.+.++.. ....++..+...|...|+++
T Consensus 213 ------------------------------------------~~~~~~~-----------~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 213 ------------------------------------------MDIQNDR-----------FIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp ------------------------------------------HHTTCHH-----------HHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------------------------------HHcCCHH-----------HHHHHHHHHHHHHHHCCCHH
Confidence 0000000 01224666777788888888
Q ss_pred hHHHHHHHHHHc----CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc---chhHhHHhHHhhcCC---h
Q 046354 326 QVFRLFARMLKS----GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA---EHYSCLADILRRAGQ---V 395 (510)
Q Consensus 326 ~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~---~ 395 (510)
+|...+++..+. +.+....++..+...+...|++++|..++++..+...-.+++ ..+..+...+...|+ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 888888877651 222224566666777777777777777777776642211121 223334444445555 5
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++|...+++..........+..+...|...|++++|...|++++
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555533111122233444455555555555555555544
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=6.4e-12 Score=108.98 Aligned_cols=166 Identities=10% Similarity=-0.011 Sum_probs=118.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
++..|......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345566666777777788888888777777543256666666777777777888888777777753 233456677777
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCCc-H-------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHERD-H-------VVLGALLGACRLHGDVRMADYIGERLIELQPS--SSGAYVLSANVH 456 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 456 (510)
.+|...|++++|...+++..+..|+ . ..|..+...+...|++++|+..|+++++.+|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 7777778888888777777655553 3 34666666677777888888888888777777 777777777777
Q ss_pred HHcCCC---------------------------hHHHHHHHHHHH
Q 046354 457 AARGEW---------------------------DEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~---------------------------~~A~~~~~~~~~ 474 (510)
...|+. ++|+..+++..+
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777776 888888887764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=4.7e-10 Score=105.15 Aligned_cols=264 Identities=12% Similarity=-0.008 Sum_probs=162.3
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CC-Ch----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hhHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NK-DI----VAWNAMITAYVDAGNMAQASELFNLMPQ-----RNV----WTWNA 210 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 210 (510)
.....+...|+++.|.+.+++.. ++ +. .+++.+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445666778888877776644 11 21 1455566677777888888777776553 121 23556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (510)
+...+...|++++|...+++...... ..+...
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~----------------------------~~~~~~-------------------- 130 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLIN----------------------------EQHLEQ-------------------- 130 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HTTCTT--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH----------------------------Hhcccc--------------------
Confidence 66677777888888777777643110 000000
Q ss_pred cChhhHHHHhcccCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--C--CchhHHHHHHhcCcCCcHHHHHHH
Q 046354 291 LDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK--P--DEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
.+ ....+..+...+...|++++|...+++....... + ...++..+...+...|++++|...
T Consensus 131 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (373)
T 1hz4_A 131 --------------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 196 (373)
T ss_dssp --------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 1123455666777788888888888777654211 1 123455666677778888888888
Q ss_pred HHHHHHhhCCCCCcchhH-----hHHhHHhhcCChHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 366 FNLMSRAYGFKPRAEHYS-----CLADILRRAGQVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
+++......-...+..+. ..+..+...|++++|...+++.....|. ...+..+...+...|++++|...+
T Consensus 197 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 197 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887765411111111121 2234466788888888888887754332 224566677778888888888888
Q ss_pred HHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 436 ERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 436 ~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+++....+.. ...+..++.++...|+.++|...+++..
T Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8887543321 1246667788888888888888888776
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=3.6e-12 Score=123.26 Aligned_cols=179 Identities=11% Similarity=-0.032 Sum_probs=157.1
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHG-FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
.++++...++.... .+...|..+...|...|++ ++|+..|++..+.. +-+...|..+...+...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666665543 3567888999999999999 99999999999863 4446789999999999999999999999
Q ss_pred HHHHhhCCCCCcchhHhHHhHHhhc---------CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh--------CCHH
Q 046354 368 LMSRAYGFKPRAEHYSCLADILRRA---------GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH--------GDVR 429 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------~~~~ 429 (510)
++.+. .|+...+..+..++... |++++|...+++..+..| +...|..+..+|... |+++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99854 68788889999999999 999999999999887777 677999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 430 MADYIGERLIELQP---SSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 430 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+|...|+++++++| +++..+..++.+|...|++++|+..|++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999998774
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=111.89 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
+..++..+...+...|++++|..+++++.+.... . .....+.....+..+...+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------~-------------~~~~~~~~~~~~~~la~~~- 79 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK------------T-------------SGHDHPDVATMLNILALVY- 79 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------H-------------HCSSSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------H-------------cCCCCHHHHHHHHHHHHHH-
Confidence 3467888889999999999999999988652000 0 0000111223344445555
Q ss_pred ccccccccChhhHHHHhcccCC-----------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCC-chh
Q 046354 284 FWDWGFQLDVNSARLAFERLEA-----------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKPD-EIT 345 (510)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~ 345 (510)
...|++++|...+++... ....++..+...|...|++++|...+++..+. +..|+ ...
T Consensus 80 ----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 80 ----RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ----HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777888888888776643 12346777778888888888888888887764 22222 345
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhC------CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---------CC
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYG------FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---------ER 410 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p 410 (510)
+..+...+...|++++|..+++++.+... .+....++..+..+|...|++++|.+.++++.+. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 66677778888888888888888765310 1112445677788888888888888888776531 11
Q ss_pred c-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 D-------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
. ...+..+...+...+.+.++...++......|..+..+..++.+|...|++++|.+++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 11222223333445566666777777777778888889999999999999999999999876
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=4.6e-11 Score=103.52 Aligned_cols=178 Identities=12% Similarity=-0.017 Sum_probs=147.0
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
++..+......+ ...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.. +-+...+
T Consensus 6 ~~~~~~~~g~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 79 (228)
T 4i17_A 6 DPNQLKNEGNDA-----LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAY 79 (228)
T ss_dssp CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHH
T ss_pred CHHHHHHHHHHH-----HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHH
Confidence 345555666666 889999999999998764 456677778999999999999999999999853 3345678
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-------chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-------EHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLG 416 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~ 416 (510)
..+...+...|++++|...+++..+. .+.++ ..|..+...+...|++++|.+.+++..+..|+ ...+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 88899999999999999999999875 23344 45788888999999999999999999988886 45788
Q ss_pred HHHHHHHhhCCH---------------------------HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 417 ALLGACRLHGDV---------------------------RMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 417 ~l~~~~~~~~~~---------------------------~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
.+...|...|+. ++|...++++++++|+++.....+..+.
T Consensus 158 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888888888877 9999999999999999988777776553
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=3.6e-11 Score=100.22 Aligned_cols=166 Identities=14% Similarity=-0.045 Sum_probs=142.5
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
+..+...+ ...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 11 ~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 11 YRDKGISH-----AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHH-----HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44445555 888999999999999886 356788889999999999999999999998863 456678888888
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 430 (510)
.+...|++++|.+.++++.+. .+.+...+..++..+...|++++|...++++.+..| +...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 345678888899999999999999999998876655 67788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchh
Q 046354 431 ADYIGERLIELQPSSSGA 448 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~ 448 (510)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999988887644
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=113.16 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCCC--------CC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMPN--------KD---IVAWNAMITAYVDAGNMAQASELFNLMPQ-------- 202 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 202 (510)
....+..+...+...|++++|..+++++.. .+ ..++..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 556677778888888888888888887652 12 34567778888888888888888876642
Q ss_pred ---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhh
Q 046354 203 ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279 (510)
Q Consensus 203 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (510)
....++..+...+...|++++|...++++.+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------------------------------------------- 142 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE------------------------------------------- 142 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 1245677788888888888888888887754200
Q ss_pred hhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCC-chhHHHHHHh
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKPD-EITFVGVLSD 352 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~~ 352 (510)
..+..-.......+..+...|...|++++|..+++++.+. +..|+ ..++..+...
T Consensus 143 ------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 204 (311)
T 3nf1_A 143 ------------------KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 204 (311)
T ss_dssp ------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHH
T ss_pred ------------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0000000001234666677777888888888888777664 11222 2356677777
Q ss_pred cCcCCcHHHHHHHHHHHHHhh------CCCCC-cch------hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAY------GFKPR-AEH------YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~------~~~~~-~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
+...|++++|..+++++.+.. ...+. ... +..+...+...+.+.++...++......| ...++..+
T Consensus 205 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 284 (311)
T 3nf1_A 205 YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNL 284 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 888888888888888877531 11121 112 22233334455666667777777765555 55688899
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
...|...|++++|...+++++++.|.
T Consensus 285 a~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 285 GALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=3e-11 Score=113.58 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=167.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ-----R----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
......+...|++++|...|++..+ + ...++..+...|...|++++|...+++..+..
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~------------- 171 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY------------- 171 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-------------
Confidence 3445567788999999999887654 2 24568888999999999999999998875411
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHH
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+.++... ....+++.+...|...|++++|.
T Consensus 172 ---------------------------------------~~~~~~~~----------~~~~~~~~lg~~y~~~~~~~~A~ 202 (378)
T 3q15_A 172 ---------------------------------------QNHPLYSI----------RTIQSLFVIAGNYDDFKHYDKAL 202 (378)
T ss_dssp ---------------------------------------HTSTTCHH----------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------------HhCCCchh----------hHHHHHHHHHHHHHHhCCHHHHH
Confidence 00000000 01235777888899999999999
Q ss_pred HHHHHHHHc----CCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh---CCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 329 RLFARMLKS----GTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY---GFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 329 ~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
..+++..+. +.++ ...++..+...+...|++++|...+++..+.. +.+....++..+...+.+.|++++|..
T Consensus 203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999887763 1111 12467778888999999999999999988621 222236677889999999999999999
Q ss_pred HHhhCCCC-----CCc-HHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 401 VVSKMPPH-----ERD-HVVLGALLGACRLHGD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 401 ~~~~~~~~-----~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
.+++..+. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+|...|++++|..++++
T Consensus 283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99876532 232 3345556666777788 77888877763 22233445678899999999999999999998
Q ss_pred HH
Q 046354 472 ME 473 (510)
Q Consensus 472 ~~ 473 (510)
..
T Consensus 362 al 363 (378)
T 3q15_A 362 VL 363 (378)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=3.1e-11 Score=108.17 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=145.7
Q ss_pred ccccChhhHHHHhcccCC-------C----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-CchhHHHH
Q 046354 288 GFQLDVNSARLAFERLEA-------K----DVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKP-DEITFVGV 349 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~l 349 (510)
...|++++|...|++..+ + ...++..+...|...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 556677777666665543 2 2457888999999999999999999998764 2223 24578888
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhh-----C-CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--------CC-cHHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAY-----G-FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--------ER-DHVV 414 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p-~~~~ 414 (510)
...+...|++++|..+++++.+.. . .+.....+..+...|...|++++|...++++.+. .| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 899999999999999999987642 1 1224667788999999999999999999887644 34 3457
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcC-------------------------------------------------CCC
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQ-------------------------------------------------PSS 445 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------------p~~ 445 (510)
+..+...|...|++++|...++++++.. |..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999999998641 333
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+..++.+|...|++++|..++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4458889999999999999999999775
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=1.5e-09 Score=95.90 Aligned_cols=168 Identities=10% Similarity=-0.020 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-----Ccch
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-----RAEH 381 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~ 381 (510)
..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHH
Confidence 334445666666677777777777766554321 13345555666677777777777777777543 44 2344
Q ss_pred hHhHHhHH--hhcC--ChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc----------CCCCch
Q 046354 382 YSCLADIL--RRAG--QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL----------QPSSSG 447 (510)
Q Consensus 382 ~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~ 447 (510)
...|+.++ ...| ++++|..+|+++.+..|+..+-..++.++.+.|++++|+..++.+.+. +|+++.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44454442 2223 677777777776655555333333444666677777777777765544 366666
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
++..++.+....|+ +|.++++++++..|..|
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 66666666666665 66677766664444333
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=2.8e-10 Score=100.83 Aligned_cols=169 Identities=9% Similarity=0.032 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHY 382 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 382 (510)
...+-.+...+.+.|++++|...|+++.+. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 334444555566666666666666666553 222 234555555566666666666666666654111111 2334
Q ss_pred HhHHhHHhh--------cCChHHHHHHHhhCCCCCCcH-HHH-----------------HHHHHHHHhhCCHHHHHHHHH
Q 046354 383 SCLADILRR--------AGQVKEAMRVVSKMPPHERDH-VVL-----------------GALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 383 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~~~~~~A~~~~~ 436 (510)
..+..++.. .|++++|...|+++.+..|+. ... ..+...|...|++++|...|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455555555 666666666666655444422 222 445667778888888888888
Q ss_pred HHHhcCCCCc---hhHHHHHHHHHHc----------CCChHHHHHHHHHHHhhcc
Q 046354 437 RLIELQPSSS---GAYVLSANVHAAR----------GEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 437 ~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 478 (510)
++++..|+++ ..+..++.+|... |++++|...++++.+..+.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 8888888754 3577777777766 7778888888877644443
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=5.6e-11 Score=95.26 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=65.9
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 429 (510)
.+...|++++|+..++.... ..| ++..+..+...|.+.|++++|++.|++..+..| +..+|..+...|...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34445555666555555442 122 233444555566666666666666666554445 4445566666666666666
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH-HHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV-RKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 473 (510)
+|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666666666666666666554443 34433
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=1.6e-11 Score=98.49 Aligned_cols=141 Identities=11% Similarity=-0.011 Sum_probs=108.1
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (510)
.+...|++++|+..++..... .|+ ...+..+...|...|++++|.+.|++..+. .+-++..|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344556677777777665542 232 335556677777888888888888888764 233677788888888899999
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYI-GERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
++|...|++..+..| +..+|..+...|.+.|++++|... ++++++++|+++..|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999988877777 577899999999999998776654 699999999999999999999888885
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1.3e-08 Score=95.16 Aligned_cols=230 Identities=10% Similarity=-0.062 Sum_probs=146.6
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhhH
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-----NKDI----VAWNAMITAYVDAGNMAQASELFNLMPQ-------R----NVWTW 208 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~ 208 (510)
+...+...|+++.|.+.+++.. .++. .++..+...+...|++++|...+++... + ....+
T Consensus 59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 138 (373)
T 1hz4_A 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence 3444455555555555555543 1222 2356677788889999998888876643 1 12456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
..+...+...|++++|...+++........
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------------- 168 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSY-------------------------------------------------- 168 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------------------------------------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------------------------------------------------
Confidence 677888899999999999999886532110
Q ss_pred cccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-hhHH-----HHHHhcCcCCcHHHH
Q 046354 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-ITFV-----GVLSDCSHAGLVEKG 362 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~~a 362 (510)
+.. ....++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|
T Consensus 169 --~~~------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 169 --QPQ------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp --CGG------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --CcH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 000 01124556677788888999998888887654212221 1222 122336678899999
Q ss_pred HHHHHHHHHhhCCCCC---cchhHhHHhHHhhcCChHHHHHHHhhCCCCC-----C-cH-HHHHHHHHHHHhhCCHHHHH
Q 046354 363 RKTFNLMSRAYGFKPR---AEHYSCLADILRRAGQVKEAMRVVSKMPPHE-----R-DH-VVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p-~~-~~~~~l~~~~~~~~~~~~A~ 432 (510)
...++..... ...+. ...+..+...+...|++++|...+++..... + +. ..+..+..++...|+.++|.
T Consensus 235 ~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 235 ANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 9988887643 11111 1134567788888999999998887764321 1 22 25566677788899999999
Q ss_pred HHHHHHHhcCC
Q 046354 433 YIGERLIELQP 443 (510)
Q Consensus 433 ~~~~~~~~~~p 443 (510)
..+++++...+
T Consensus 314 ~~l~~al~~~~ 324 (373)
T 1hz4_A 314 RVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999885543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=3.7e-10 Score=100.06 Aligned_cols=187 Identities=14% Similarity=0.030 Sum_probs=141.4
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC--C-C---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC-
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-D---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD- 342 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 342 (510)
+..........+ ...|++++|...|+++.. | + ...+..+..+|.+.|++++|...|++..+... .|.
T Consensus 14 ~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 14 SPQEAFERAMEF-----YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SHHHHHHHHHHH-----HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 334445555556 889999999999999876 3 3 45788889999999999999999999998521 112
Q ss_pred chhHHHHHHhcCc--------CCcHHHHHHHHHHHHHhhCCCCCcchh-----------------HhHHhHHhhcCChHH
Q 046354 343 EITFVGVLSDCSH--------AGLVEKGRKTFNLMSRAYGFKPRAEHY-----------------SCLADILRRAGQVKE 397 (510)
Q Consensus 343 ~~~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~ 397 (510)
...+..+..++.. .|++++|...|+++.+.+ +.+.... ..+...|.+.|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 2355666667777 999999999999999862 2233444 456888999999999
Q ss_pred HHHHHhhCCCCCCc----HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcC
Q 046354 398 AMRVVSKMPPHERD----HVVLGALLGACRLH----------GDVRMADYIGERLIELQPSSSGA---YVLSANVHAARG 460 (510)
Q Consensus 398 A~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g 460 (510)
|+..|+++.+..|+ ...+..+..+|... |++++|...|+++++..|+++.. ...+..++...|
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 99999988755554 44677788888766 89999999999999999998654 444555555555
Q ss_pred CChH
Q 046354 461 EWDE 464 (510)
Q Consensus 461 ~~~~ 464 (510)
++++
T Consensus 247 ~~~~ 250 (261)
T 3qky_A 247 ELEG 250 (261)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 4443
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=7.2e-10 Score=99.50 Aligned_cols=178 Identities=7% Similarity=-0.026 Sum_probs=146.0
Q ss_pred ChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
..+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+..
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455566666665566677888889999999999999999999863 34556888889999999999999999999876
Q ss_pred hhCCCCCcchhHh-HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--ch
Q 046354 372 AYGFKPRAEHYSC-LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--SG 447 (510)
Q Consensus 372 ~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 447 (510)
. .|+...... ....+.+.++.++|...+++..+..| +...+..+...+...|++++|...|+++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4 455443322 23346678889999999988876677 67789999999999999999999999999999998 77
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++.++...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999999988765
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=9.9e-11 Score=117.81 Aligned_cols=165 Identities=11% Similarity=0.066 Sum_probs=145.2
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-ch
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EI 344 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 344 (510)
+.+...++.+...+ ...|++++|...|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .|+ ..
T Consensus 6 P~~a~al~nLG~~~-----~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~ 78 (723)
T 4gyw_A 6 PTHADSLNNLANIK-----REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 78 (723)
T ss_dssp CHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 33456777888888 999999999999998876 45678999999999999999999999999985 454 56
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
.|..+..++...|++++|.+.|++..+. .| +...+..+..+|.+.|++++|++.|++..+..| +...+..+...+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 8999999999999999999999999875 44 678899999999999999999999999987788 567999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCC
Q 046354 423 RLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p 443 (510)
...|++++|.+.+++++++.|
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999986544
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=2.6e-09 Score=92.16 Aligned_cols=163 Identities=11% Similarity=-0.032 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chhHhH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHYSCL 385 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 385 (510)
+..+...+.+.|++++|...|+++.+. .|+. ..+..+..++...|++++|...|+++.+.+.-.+.. ..+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 334445556666666666666666653 2221 244555556666666666666666666541111110 122233
Q ss_pred HhHHh------------------hcCChHHHHHHHhhCCCCCCcHH-HH-----------------HHHHHHHHhhCCHH
Q 046354 386 ADILR------------------RAGQVKEAMRVVSKMPPHERDHV-VL-----------------GALLGACRLHGDVR 429 (510)
Q Consensus 386 ~~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~ 429 (510)
..++. ..|++++|...|+++.+..|+.. .+ ..+...+.+.|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 33332 25677777777777766655432 22 24456688899999
Q ss_pred HHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 430 MADYIGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+|...|+++++..|+++ ..+..++.+|.+.|++++|++.++.+...
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 99999999999999986 45889999999999999999999988743
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=8.5e-10 Score=86.26 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=52.1
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..++..+...|++++|...++++....| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 33344444444444444444444432222 34455555566666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|...++++.
T Consensus 118 ~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 118 DYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666554
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1.2e-09 Score=98.35 Aligned_cols=208 Identities=9% Similarity=-0.029 Sum_probs=133.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ-------R--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
...|...|++++|...|.+..+ + ...+|+.+..+|...|++++|+..+++..+..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------- 107 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------- 107 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------
Confidence 5566777777777777765543 1 14578888888999999999998888875410
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhc-CChhhHHHH
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH-GHGFQVFRL 330 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~ 330 (510)
...|+...+ ..+++.+...|... |++++|+..
T Consensus 108 ------------------------------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 108 ------------------------------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp ------------------------------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ------------------------------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHH
Confidence 111222111 22466677778885 888888888
Q ss_pred HHHHHHcCCCC-C----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc-----hhHhHHhHHhhcCChHHHHH
Q 046354 331 FARMLKSGTKP-D----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-----HYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 331 ~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 400 (510)
|++..+..... + ..++..+...+...|++++|...|++..+...-.+... .+..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877631100 1 24567777888888888888888888886411111111 45667777888888999998
Q ss_pred HHhhCCCCCCcHH------HHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 401 VVSKMPPHERDHV------VLGALLGACR--LHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 401 ~~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.+++..+..|+.. .+..++.++. ..+++++|+..|+++..++|.....+..
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 8888876666422 2344455554 3467888888888777776655433333
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=5.6e-10 Score=87.32 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 357788899999999999999999998864 445677888888899999999999999999875 24466788889999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+...|++++|.+.++++.+..| +...+..+...+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999998876555 67788889999999999999999999999988863
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=1.7e-10 Score=116.75 Aligned_cols=170 Identities=12% Similarity=-0.070 Sum_probs=146.2
Q ss_pred ccccChhhHHHHhcccC--------C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 288 GFQLDVNSARLAFERLE--------A---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
...|++++|.+.+++.. + .+...|..+...|...|++++|...|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67889999999999876 3 456788889999999999999999999999853 44556888888899999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
|++++|...|+++.+. .+.+...+..+..++.+.|++++ .+.|++..+..| +...|..+..++...|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999975 23367888999999999999999 999999887777 6678999999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+++++++|++...+..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877665
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=5.4e-10 Score=92.33 Aligned_cols=159 Identities=8% Similarity=0.007 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH-H
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI-L 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 389 (510)
+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+. .|++.....+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4455666777888888888888776642 334456777777788888888888888887654 3343333222212 1
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCCChHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--SGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 466 (510)
...+...+|...+++..+..| +...+..+...+...|++++|...|+++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334457778887776677 57788999999999999999999999999999875 458999999999999999999
Q ss_pred HHHHHHH
Q 046354 467 QVRKKME 473 (510)
Q Consensus 467 ~~~~~~~ 473 (510)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=4.3e-10 Score=89.57 Aligned_cols=97 Identities=7% Similarity=-0.054 Sum_probs=87.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...|++.....| +...|..+..+|...|++++|...|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455677788888999999999999999887777 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|+..|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998873
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.1e-08 Score=87.16 Aligned_cols=169 Identities=10% Similarity=-0.072 Sum_probs=140.7
Q ss_pred HHHHhcccCC-CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC----cHHHHHHHHHHHH
Q 046354 296 ARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG----LVEKGRKTFNLMS 370 (510)
Q Consensus 296 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~ 370 (510)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444333 567788889999999999999999999999875 45677777777777 6 8999999999997
Q ss_pred HhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCc---HHHHHHHHHHHHh----hCCHHHHHHHHHHHH
Q 046354 371 RAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERD---HVVLGALLGACRL----HGDVRMADYIGERLI 439 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 439 (510)
+. .++..+..|...|.. .+++++|.+.|++..+..|. ...+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 64 366777888888877 88999999999999877664 7788899999988 789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHc-C-----CChHHHHHHHHHH
Q 046354 440 ELQPSSSGAYVLSANVHAAR-G-----EWDEFAQVRKKME 473 (510)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~ 473 (510)
+. |.++..+..|+.+|... | +.++|..+|++..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 88 67778899999999764 3 8999999999887
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=1.6e-09 Score=97.62 Aligned_cols=177 Identities=12% Similarity=0.033 Sum_probs=135.0
Q ss_pred ChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCC-chhHHHHHHhcCcCCcHHHHHHHH
Q 046354 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKPD-EITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
++++|...|.+. ...|...|++++|...|++.... |-+++ ..+|..+...|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777765543 56788899999999999887653 32222 457888889999999999999999
Q ss_pred HHHHHhhCCCCC----cchhHhHHhHHhhc-CChHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHhhCCHHHHHHH
Q 046354 367 NLMSRAYGFKPR----AEHYSCLADILRRA-GQVKEAMRVVSKMPPHERD-------HVVLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 367 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~A~~~ 434 (510)
++..+...-..+ ..++..+..+|... |++++|+..+++..+..|+ ..++..+...+...|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988765211112 34678889999996 9999999999988754331 34688889999999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 435 GERLIELQPSSSG-------AYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 435 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
|+++++..|+++. .+..++.++...|++++|+..+++.. ...|++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~ 232 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNF 232 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC----
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCC
Confidence 9999999887754 46778899999999999999998544 444443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=2.1e-07 Score=89.82 Aligned_cols=376 Identities=10% Similarity=0.016 Sum_probs=223.3
Q ss_pred CC-ChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCC-hhhHHHHHH
Q 046354 7 TG-KVKEATKLFDEMSQ--PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR-VDEARKVFD 82 (510)
Q Consensus 7 ~g-~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~ 82 (510)
.| +++.|..+|+.+.. |. |+++.+..+|++.....|+...|...+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 36667777766641 33 88999999999999988999999999888877763 466777887
Q ss_pred hhcc------CChhhHHHHHHHHHc----CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 046354 83 EIYE------GNVYSWTSLISGYFK----ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152 (510)
Q Consensus 83 ~~~~------~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~ 152 (510)
.... .+...|...+..+.. .|+.+.+.++|++.... |.. .+..+-..|.....- .+..+...++.-
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~-~~~~lw~~Y~~fE~~--~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG-SLSELWKDFENFELE--LNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT-THHHHHHHHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh-hHHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 7643 355778888776543 46788999999999885 321 112222222111000 001111111111
Q ss_pred HHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 046354 153 LERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAG--N-----MAQASELFNLMPQ---RNVWTWNAMIDRYARN 218 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (510)
. .+.+..|..+++.+. ..+...|...+..-...+ - .+++..+|+++.. .+...|...+..+.+.
T Consensus 149 ~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 149 T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 1 123333343333322 124446666555432221 1 3456677777654 3467788888888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHH
Q 046354 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 298 (510)
|+.++|..++++.... |....+........... .. +..+...+ ... ..+.+..
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---------------~~~l~~~~-----~~~-~~~~~~~ 279 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---------------YGDLKRKY-----SMG-EAESAEK 279 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---------------HHHHHHHT-----C----------
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---------------HHHHHHHH-----Hhh-ccchhhh
Confidence 9999999999999987 55443322211111100 00 11111111 000 0000000
Q ss_pred HhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc-CcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC-SHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
.........|...+....+.++.+.|..+|++. .. .+++...|......- ...++.+.|..+|+...+.+ +.
T Consensus 280 ---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~ 352 (493)
T 2uy1_A 280 ---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PD 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TT
T ss_pred ---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CC
Confidence 000012245777777777888899999999998 32 122333443222111 12336999999999999863 33
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566777888889999999999999985 256788888888888899999999999987
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=1.1e-08 Score=91.35 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
..++..+..+|...|++++|...+++..+ ....++..+...|...|++++|...+++.....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 115 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------- 115 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 45677888888899999998888877652 134568888888999999999998888875420
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcC
Q 046354 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322 (510)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (510)
.+....-......++..+...|...|
T Consensus 116 ------------------------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 116 ------------------------------------------------------EKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp ------------------------------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred ------------------------------------------------------HHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 00000000001235666777788888
Q ss_pred ChhhHHHHHHHHHHc------CCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh------CCCC-CcchhHhHHhH
Q 046354 323 HGFQVFRLFARMLKS------GTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY------GFKP-RAEHYSCLADI 388 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~ 388 (510)
++++|...+++..+. +..| ...++..+...+...|++++|..+++++.+.. ...+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 888888888877664 1122 23467777788888888888888888877531 1122 22233333333
Q ss_pred Hhh------cCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 389 LRR------AGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 389 ~~~------~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
+.. ...+..+...++......| ...++..+...|...|++++|...++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 2234555555665554444 4557888999999999999999999998754
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=8.9e-09 Score=90.96 Aligned_cols=154 Identities=9% Similarity=0.025 Sum_probs=117.1
Q ss_pred ccccChhhHHHHhcccCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-----CchhHHHHHHhc--C-
Q 046354 288 GFQLDVNSARLAFERLEAK-----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-----DEITFVGVLSDC--S- 354 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~--~- 354 (510)
...|++++|.+++.+.... +...+..++..+.+.|+++.|.+.+++|.+. .| +..+...+..++ .
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 6778999999998887442 4457788899999999999999999999874 67 355666666552 2
Q ss_pred -cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC----------CC-cHHHHHHHHHHH
Q 046354 355 -HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH----------ER-DHVVLGALLGAC 422 (510)
Q Consensus 355 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p-~~~~~~~l~~~~ 422 (510)
..++...|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+. .| ++.+...++...
T Consensus 189 ~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~ 265 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA 265 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH
Confidence 344899999999999764 454233334445889999999999999876543 25 566775676666
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
...|+ +|.++++++.+..|++|..
T Consensus 266 ~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 266 LMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66777 8999999999999999754
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=2.1e-09 Score=106.86 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=126.7
Q ss_pred ccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.|++++|...|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998876 346789999999999999999999999998853 345668888899999999999999999
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIELQ 442 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 442 (510)
++..+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 234677889999999999999999999999886666 567888999999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 046354 443 PSSSGAYVLSA 453 (510)
Q Consensus 443 p~~~~~~~~l~ 453 (510)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=5.3e-10 Score=89.19 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=85.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...|++.....| +...|..+..+|...|++++|...|++++.++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455666777888888999999988888776666 6778888888888899999999999999999999988899999999
Q ss_pred HHcCCChHHHHHHHHHHHhhccccce
Q 046354 457 AARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
...|++++|+..|++..+..+..|..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999998877544444443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=4.1e-09 Score=104.66 Aligned_cols=150 Identities=11% Similarity=-0.003 Sum_probs=115.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999987752 334568888888999999999999999999863 33467788899999999999999999
Q ss_pred HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc---CCChHHHHHHHHHH
Q 046354 401 VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR---GEWDEFAQVRKKME 473 (510)
Q Consensus 401 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 473 (510)
.+++..+..| +...+..+...+...|++++|...++++++.+|+++..+..++.++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999876667 5678899999999999999999999999999999999999999999999 99999999998776
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=3.5e-09 Score=81.73 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=51.3
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+......|.+.|++++|++.|++..+..| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 33445555555555555555555544444 44455555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|++.|++..
T Consensus 96 ~~~~A~~~~~~al 108 (126)
T 4gco_A 96 EWSKAQRAYEDAL 108 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.5e-09 Score=109.73 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=134.0
Q ss_pred HhcCChhhHHHHHHHHH--------HcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHh
Q 046354 319 SNHGHGFQVFRLFARML--------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (510)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+. .+.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 42 2445567888888999999999999999999875 2446788899999999
Q ss_pred hcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 391 RAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
..|++++|.+.|++..+..| +...|..+...+...|++++ +..|+++++.+|+++..+..++.+|...|++++|+..|
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999987777 66788999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHH
Q 046354 470 KKME 473 (510)
Q Consensus 470 ~~~~ 473 (510)
++..
T Consensus 558 ~~al 561 (681)
T 2pzi_A 558 DEVP 561 (681)
T ss_dssp HTSC
T ss_pred Hhhc
Confidence 8554
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=3.8e-09 Score=81.50 Aligned_cols=109 Identities=13% Similarity=-0.038 Sum_probs=90.8
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+......+.+.|++++|.+.|++..+. .+.++..|..+..+|.+.|++++|+..+++..+..| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555667777888888888888888764 244677888888888999999999999988876666 5778999999999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
..|++++|...|+++++++|+++..+..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999888877665
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=1.5e-08 Score=91.91 Aligned_cols=156 Identities=12% Similarity=0.011 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC---CCC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGT---KPD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 380 (510)
+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...+++..+.+.-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 456667777788888888888877654310 111 2456677777877 9999999999888764211111 35
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC---c----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER---D----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA----- 448 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----- 448 (510)
++..+...|.+.|++++|+..+++..+..| + ...+..++..+...|++++|...|++.+ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 677888899999999999999988764322 1 2256666677778899999999999999 88876543
Q ss_pred HHHHHHHHHHcCCChHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~ 468 (510)
...++.++ ..|+.+.+..+
T Consensus 236 l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHH
Confidence 33344444 56776666553
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=8e-09 Score=87.78 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=111.1
Q ss_pred ccccChhhHHHHhcccCC--C-ChhhHHH----------------HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 288 GFQLDVNSARLAFERLEA--K-DVVSWTA----------------MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...|++++|...|++... | +...|.. +..+|.+.|++++|...|++..+.. +-+...+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 93 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEA 93 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 677888999888888765 2 3345555 7888888899999999998888753 345567788
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC--hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ--VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 426 (510)
+...+...|++++|...|+++.+. -+.++..+..+..+|...|. .+.+...++......|....+.....++...|
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 888888889999999999888874 23356777777777765543 45566677776633333344555566667778
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 046354 427 DVRMADYIGERLIELQPSS 445 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~ 445 (510)
++++|...|++++++.|++
T Consensus 172 ~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 172 RYEKARNSLQKVILRFPST 190 (208)
T ss_dssp THHHHHHHHHHHTTTSCCH
T ss_pred CHHHHHHHHHHHHHhCCCH
Confidence 8899999999988888874
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=9.4e-08 Score=86.02 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=123.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCCCch----hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc----chhH
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSG-TKPDEI----TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA----EHYS 383 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 383 (510)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.+...-.++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999988742 122211 23346667778889999999999998741112222 2688
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCC-------CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhH
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPP-------HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAY 449 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 449 (510)
.+...|...|++++|...++++.+ ..+ ...++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999887762 222 23478889999999999999999999999655433 4569
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHH
Q 046354 450 VLSANVHAARGE-WDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~-~~~A~~~~~~~~ 473 (510)
..++.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999996 599999999887
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=2.6e-08 Score=84.62 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHH----------------HHHHHHhcCChhhHHHHHHhhcc--
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESA----------------MIDGYVKAGRVDEARKVFDEIYE-- 86 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~-- 86 (510)
..+......+.+.|++++|+..|++..+..|+ ...+.. +..++.+.|++++|...|++.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444556678899999999999999888774 455666 78888899999999999988854
Q ss_pred C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCC
Q 046354 87 G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121 (510)
Q Consensus 87 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 121 (510)
| +..++..+...+...|++++|...|++..+..|+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 5678888888899999999999999988876443
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=7.3e-09 Score=81.98 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=81.6
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+.+.|++++|...|++.....| +...|..+..++...|++++|...|+++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44455667778888888888888888776666 66678888888888889999999999988888888888888888888
Q ss_pred HcCCChHHHHHHHHHHHhhcccc
Q 046354 458 ARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
..|++++|++.|++..+..+..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCc
Confidence 89999999888887774444444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=6.4e-09 Score=94.38 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=132.3
Q ss_pred ccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCC-chhHHHHHHhcCcCCcHHHHHH
Q 046354 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT----KPD-EITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~p~-~~~~~~li~~~~~~g~~~~a~~ 364 (510)
.++++.|...|.+ ....|...|++++|...|.+..+... .+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4677777776543 46678889999999999988765311 111 3477888888999999999999
Q ss_pred HHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHH
Q 046354 365 TFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 365 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
.+++..+.+.-..+ ..++..+..+|.. |++++|+..+++..+..| ...++..+...+...|++++|..
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764211112 3567788889988 999999999988764422 14578888999999999999999
Q ss_pred HHHHHHhcCCCCc------hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSS------GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.|+++++..|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998766543 246777888889999999999999765
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=1.8e-08 Score=85.90 Aligned_cols=121 Identities=8% Similarity=-0.055 Sum_probs=95.9
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
.+...+...|++++|...+++.. .|++..+..+...|.+.|++++|...+++..+..| +...+..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445556677777777766552 44666777777778888888888888877765555 5668888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSSS----------------GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++|...|+++++..|.+. ..+..++.+|...|++++|...+++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999888877 789999999999999999999999877
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=1e-07 Score=91.96 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
|...+....+.++.+.|..+|+.+ +. . ..+..+|...+..-...| +.+.|..+|+...+..| ++..|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333444444455677777777776 32 1 123333332222222223 57777777766654334 2344555555556
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|+.+.|..+|+++ +.....+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777777765 2334456666666667787777777777766
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=1.1e-07 Score=85.59 Aligned_cols=163 Identities=11% Similarity=-0.026 Sum_probs=124.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc------hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----c
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE------ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----A 379 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 379 (510)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556778889999999999999888753 2222 12334555667889999999999998753111112 3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCC---CCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------C
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPP---HERD-----HVVLGALLGACRLHGDVRMADYIGERLIELQPS------S 445 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 445 (510)
.+++.+...|...|++++|...+++..+ ..|+ ..++..+...|...|++++|...++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778899999999999999999987752 2232 258889999999999999999999999865432 1
Q ss_pred chhHHHHHHHHHHcCCChHH-HHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEF-AQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 473 (510)
...|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45588999999999999999 78788765
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.6e-08 Score=82.27 Aligned_cols=126 Identities=11% Similarity=-0.022 Sum_probs=95.2
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|+++.|...++...+. .+.+...+..++..+...|++++|...+++..+..| +...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444455555666667777666666653 233556667777777778888888888777765555 56688888889999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCChHHHHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV--HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 473 (510)
.|++++|...++++++..|.++..+..+..+ +...|++++|++.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999998887544444 888999999999998776
No 120
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=6.4e-09 Score=85.86 Aligned_cols=127 Identities=9% Similarity=0.097 Sum_probs=71.8
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH-HhhcCCh-
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI-LRRAGQV- 395 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 395 (510)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 344566666666666665542 334455666666666666666666666666653 12244455555555 5566665
Q ss_pred -HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 396 -KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 396 -~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
++|...++++.+..| +...+..+...+...|++++|...++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 666666666554444 3445556666666666666666666666666666543
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=2.7e-08 Score=89.21 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=113.4
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 419 (510)
+.+...+..+...+...|++++|...++++.+. -+.+...+..+..++.+.|++++|...++++....|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 444556777778888999999999999999875 234677888999999999999999999999997788666443333
Q ss_pred H-HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 420 G-ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 420 ~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
. .+...++.++|...++++++.+|+++..+..++.+|...|++++|+..++++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3 366778889999999999999999999999999999999999999999998873
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=3.1e-08 Score=85.30 Aligned_cols=156 Identities=13% Similarity=0.024 Sum_probs=121.9
Q ss_pred ccccChhhHHHHhcccCC--CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch----hHHHHHHhcC---
Q 046354 288 GFQLDVNSARLAFERLEA--KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI----TFVGVLSDCS--- 354 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~--- 354 (510)
...|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..+..++.
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhh
Confidence 788999999999999875 33 246778889999999999999999999985 34432 2333333332
Q ss_pred ---------------cCCcHHHHHHHHHHHHHhhCCCCC-cchh-----------------HhHHhHHhhcCChHHHHHH
Q 046354 355 ---------------HAGLVEKGRKTFNLMSRAYGFKPR-AEHY-----------------SCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 355 ---------------~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 401 (510)
..|+.++|...|+++.+. .|+ .... ..+...|.+.|++++|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 468999999999999874 343 3332 2456678899999999999
Q ss_pred HhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 402 VSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 402 ~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
|+++.+..|+. ..+..+..++.+.|++++|...++.+....|++...
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 99987666643 468888999999999999999999999988887543
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=5.1e-08 Score=80.27 Aligned_cols=153 Identities=7% Similarity=0.003 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHH-HHcC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISG-YFKA 102 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 102 (510)
.+..+...+.+.|++++|+..|++..+..| +...+..+..++...|++++|...++...+ |+...+..+... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 344555566667777777777777666555 445566666667777777777777776643 322222211111 1122
Q ss_pred CChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC---hhHH
Q 046354 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKD---IVAW 177 (510)
Q Consensus 103 g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~---~~~~ 177 (510)
++...|...|++..+..|+. ...+..+...+...|++++|.+.|+++. .|+ ...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDN--------------------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred cccchHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 22334566666666543432 2233344455556666666776666655 232 3466
Q ss_pred HHHHHHHHhcCCHHHHHHHHhh
Q 046354 178 NAMITAYVDAGNMAQASELFNL 199 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~ 199 (510)
..+..++...|+.++|...|++
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHH
Confidence 7777777777777777776654
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=2e-08 Score=78.15 Aligned_cols=114 Identities=14% Similarity=0.009 Sum_probs=64.9
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+..| +...+..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333344444444444444444444431 112334444455555555555555555555443333 45566666777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
.|++++|...++++++..|.+...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777766553
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=2.3e-08 Score=77.49 Aligned_cols=118 Identities=10% Similarity=-0.074 Sum_probs=88.1
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|...+++..+..| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555566666666666666666653 233455666777777777888888877777665555 466788888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888999999998888764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=3.1e-08 Score=75.97 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555566666666666666666653 223455566677777777777777777776654444 566777888888
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999988888888888888887776654
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=1e-07 Score=85.08 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=136.8
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHH----Hhc---CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH-
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAY----SNH---GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE- 360 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~- 360 (510)
+++++...++.+.. .+..+|+.--..+ ... +++++++.+++.+.+.. +-+...|..-...+...|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 88888888888776 3445666544444 444 78899999999999863 556677777666666777777
Q ss_pred -HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC------hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH-HHH
Q 046354 361 -KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ------VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV-RMA 431 (510)
Q Consensus 361 -~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~A 431 (510)
+++++++++.+. -+-|-..|+.-..++.+.|+ ++++++.++++....| |...|+.+...+.+.|+. +.+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 899999999875 23355666655555666665 8889998888876677 777888888888887764 445
Q ss_pred HHHHHHHHhcC---CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 432 DYIGERLIELQ---PSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 432 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
..++++..+++ |.++.++..++.+|.+.|+.++|.++++.+...+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 56777766655 778888999999999999999999999988743333
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=8.7e-08 Score=81.61 Aligned_cols=127 Identities=9% Similarity=-0.042 Sum_probs=74.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 344444555555555555443 2344445555555555555555555555555543 1223444555555555555
Q ss_pred ChHHHHHHHhhCCCCC----------------C-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 394 QVKEAMRVVSKMPPHE----------------R-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~----------------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
++++|.+.+++..+.. | ....+..+...+...|++++|...++++++..|++.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 5555555555444322 2 236778888889999999999999999999888763
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.78 E-value=3.4e-08 Score=74.11 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=84.8
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS--SSGAYVLSAN 454 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 454 (510)
+...+..+...+.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 566777888888999999999999988775555 5678888889999999999999999999999999 8888999999
Q ss_pred HHHHc-CCChHHHHHHHHHHH
Q 046354 455 VHAAR-GEWDEFAQVRKKMER 474 (510)
Q Consensus 455 ~~~~~-g~~~~A~~~~~~~~~ 474 (510)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 99999 999999999997763
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.77 E-value=2.2e-08 Score=91.91 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=120.1
Q ss_pred cccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
..+++++|...++.... .+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~ 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH
Confidence 34455555555555443 23456777777788888888888888887764 3332110 00111111
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
- . .....+..+..+|.+.|++++|+..+++..+..| +...|..+..+|...|++++|...|+++++++|+
T Consensus 192 ~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0 1135678889999999999999999999887766 6779999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHH-HHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEF-AQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 473 (510)
++..+..++.++...|++++| ...++.|.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 45666665
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.4e-08 Score=78.35 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=76.8
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
..+..+...+.+.|++++|...|++..+..| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3455667777888888888888888776666 567888888888888888888888888888888888888888888888
Q ss_pred cCCChHHHHHHHHHH
Q 046354 459 RGEWDEFAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~A~~~~~~~~ 473 (510)
.|++++|+..+++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 888888888888776
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=1.9e-08 Score=76.91 Aligned_cols=93 Identities=10% Similarity=-0.093 Sum_probs=84.0
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
.+..+...+.+.|++++|...+++..+..| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345567788899999999999999887777 6778888999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHH
Q 046354 460 GEWDEFAQVRKKME 473 (510)
Q Consensus 460 g~~~~A~~~~~~~~ 473 (510)
|++++|+..+++..
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999766
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.72 E-value=4.1e-08 Score=79.80 Aligned_cols=109 Identities=12% Similarity=-0.088 Sum_probs=85.3
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA 421 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 421 (510)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++..+..| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 446667777788888888888888888874 233677778888888888888888888888876666 56688888888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
+...|++++|...|++++++.|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 88888888888888888888888877654443
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=9e-09 Score=81.97 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=84.8
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|...|+.+... -+.++..+..+..++...|++++|...|++.....| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35566667777888888888888888764 234677778888888899999999999988876666 567888888999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
...|++++|...|++++++.|+++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999998876543
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=3.8e-08 Score=78.20 Aligned_cols=101 Identities=13% Similarity=-0.047 Sum_probs=87.8
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|...|+.+.+. -+.++..|..+..+|.+.|++++|...|++..+..| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 36667777888999999999999999874 244678888999999999999999999999887777 577899999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 423 RLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
...|++++|...|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998864
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=8.4e-08 Score=75.13 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=76.8
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+...+..+...+...|++++|...|++.....| +...|..+...+...|++++|...++++++.+|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3556677777778888888888888877765555 466777788888888888888888888888888888888888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 046354 456 HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~ 473 (510)
|...|++++|+..+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 888888888888888776
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=5.3e-06 Score=74.00 Aligned_cols=160 Identities=8% Similarity=0.021 Sum_probs=116.0
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc------HH
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF--QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL------VE 360 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~ 360 (510)
+++++..+++++.+ .+..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 34444444444433 35556666666666777777 9999999999864 4566677666555555565 88
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH-HHHHHhhCCCCC----CcHHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE-AMRVVSKMPPHE----RDHVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+..++.+.. .++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999998874 34477888888888888888444 556777766432 37788999999999999999999999
Q ss_pred HHHHh-cCCCCchhHHHHHH
Q 046354 436 ERLIE-LQPSSSGAYVLSAN 454 (510)
Q Consensus 436 ~~~~~-~~p~~~~~~~~l~~ 454 (510)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 79988777765543
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=1.3e-07 Score=73.48 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=88.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455677888899999999999999999887766 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998773
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=4.3e-07 Score=77.18 Aligned_cols=127 Identities=9% Similarity=-0.139 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCC---
Q 046354 310 SWTAMILAYSNHG----HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPR--- 378 (510)
Q Consensus 310 ~~~~l~~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~--- 378 (510)
.+..+...|.. + ++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+. .|+
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~ 124 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAA 124 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcch
Confidence 34444444554 4 7888888888887654 45566666666666 78889999999888754 332
Q ss_pred cchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhcCC
Q 046354 379 AEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH-G-----DVRMADYIGERLIELQP 443 (510)
Q Consensus 379 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 443 (510)
+..+..|...|.. .+++++|...|++..+..++...+..|...|... | +.++|...|+++.+..+
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6777788888887 7889999999988865545666777787777653 3 89999999999887654
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=7.5e-08 Score=79.32 Aligned_cols=124 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH-HHhhCCH-
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA-CRLHGDV- 428 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~- 428 (510)
.+...|++++|...++...+. .+.+...+..+...|...|++++|...+++..+..| +...+..+... +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 356678888888888888764 234667788888888888888888888888775555 56677777777 6677887
Q ss_pred -HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 429 -RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 429 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
++|...++++++..|+++..+..++.+|...|++++|...++++.+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888887764333
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=5.4e-08 Score=75.10 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=81.5
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-------hHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG-------AYVLS 452 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l 452 (510)
.+..+...+.+.|++++|++.|++..+..| +...|..+..+|...|++++|+..+++++++.|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 456688889999999999999999887777 6778999999999999999999999999998887653 57778
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 046354 453 ANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.++...|++++|++.|++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999999766
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=3.7e-08 Score=87.92 Aligned_cols=187 Identities=9% Similarity=-0.059 Sum_probs=130.8
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 350 (510)
.+..+...+ ...|++++|...|++... .+...|..+..+|...|++++|...+++..+.. +.+...+..+.
T Consensus 6 ~~~~~g~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 6 ELKEQGNRL-----FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344455555 888999999999998765 366788889999999999999999999988752 34456788888
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 429 (510)
.++...|++++|...|+...+. .| +...+...+....+..+.......-.... .++......+ ..+ ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSIEERRI--HQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCC--CCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH-HHH-HHHHHH
Confidence 8899999999999999988764 22 22222223332222222222222222222 2333333333 222 368999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCChHHHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAAR-GEWDEFAQVRKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 473 (510)
+|.+.++++++.+|++......+...+.+. +++++|.++|+.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999998877777777777776 77899999998776
No 143
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=1.3e-07 Score=73.12 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSS---SGAYVLSANVHA 457 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 457 (510)
+...+.+.|++++|...|+++.+..|+. ..+..+...+...|++++|...|+++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3344444555555555555444333321 244444455555555555555555555555555 344555555555
Q ss_pred HcCCChHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKME 473 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~ 473 (510)
..|++++|...++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=1.3e-07 Score=71.58 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
..++..+...|++++|...+++.....| +...+..+...+...|++++|...++++++..|+++..+..++.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 3344444444455555444444433333 333444444444445555555555555555555544445555555555555
Q ss_pred ChHHHHHHHHHH
Q 046354 462 WDEFAQVRKKME 473 (510)
Q Consensus 462 ~~~A~~~~~~~~ 473 (510)
+++|...+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.9e-07 Score=73.04 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=57.3
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..+...+...|++++|...|++..+..|+ ...+..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334445555556666666666666665555554 3455555566666666666666666666666666666666666
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 046354 455 VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~ 473 (510)
+|...|++++|...+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666554
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=9.8e-08 Score=73.56 Aligned_cols=111 Identities=13% Similarity=-0.111 Sum_probs=84.1
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...|++..+. .+.++..+..+..++.+.|++++|...+++..+..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455556666777777777777777764 233567777788888888888888888888776666 5668888888899
Q ss_pred hhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQ------PSSSGAYVLSANVHA 457 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 457 (510)
..|++++|...|+++++++ |+++.....+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999888 777766666665543
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=2.1e-07 Score=71.17 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=87.1
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+...|++++|.+.++++.+..| +..++..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677888999999999999999998876555 67788899999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKMER 474 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~ 474 (510)
..|++++|..+++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998873
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=1.7e-07 Score=70.86 Aligned_cols=110 Identities=9% Similarity=-0.039 Sum_probs=81.4
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...++..... .+.++..+..+...+.+.|++++|...+++..+..| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666677777777777777653 233566667777777888888888888877765555 5667888888888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
..|++++|...++++++..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999998887777666553
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=7.7e-08 Score=75.99 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=77.6
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...|+.+... -+.++..+..+..++.+.|++++|...|++.....| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555566777777777777777653 233566677777778888888888888887765556 5567778888888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
..|++++|...|++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999998888887664443
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=1.6e-07 Score=78.94 Aligned_cols=165 Identities=9% Similarity=-0.085 Sum_probs=108.7
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|+++.+.+.++.... .....+..+...+...|++++|...|++.... .|+...+... ....-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~-- 82 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK-- 82 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH--
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH--
Confidence 455666666666654433 23446777777888888888888888888774 2332211100 00000
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
... .....+..+..+|.+.|++++|...+++..+..| +...+..+..++...|++++|...|++++++.|
T Consensus 83 -~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 83 -KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp -HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred -HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 000 0134667788888999999999999988876666 677888999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCChHHH-HHHHHHH
Q 046354 444 SSSGAYVLSANVHAARGEWDEFA-QVRKKME 473 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 473 (510)
+++..+..++.++...|+.+++. ..+..+.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877777 4455444
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.57 E-value=5.6e-08 Score=73.83 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=58.2
Q ss_pred cCChHHHHHHHhhCCCC---CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 392 AGQVKEAMRVVSKMPPH---ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
.|++++|+..|++..+. .| +...+..+...|...|++++|...++++++..|+++..+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777776655 24 345667777777777888888888888777777777777777777888888888887
Q ss_pred HHHHHHH
Q 046354 468 VRKKMER 474 (510)
Q Consensus 468 ~~~~~~~ 474 (510)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776663
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=1.6e-07 Score=73.72 Aligned_cols=90 Identities=14% Similarity=-0.015 Sum_probs=70.0
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCc-------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-------CCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERD-------------HVVLGALLGACRLHGDVRMADYIGERLIEL-------QPS 444 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~ 444 (510)
....+.+.|++++|+..|++..+..|+ ...|..+..++.+.|++++|+..+++++++ +|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 344445555555555555555433333 338888999999999999999999999999 999
Q ss_pred CchhH----HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 SSGAY----VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 ~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++..| ...+.++...|++++|+..|++...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 98889 9999999999999999999997764
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=1.8e-07 Score=75.94 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=67.4
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+.+.|++++|+..|++..+..| +...|..+..+|...|++++|+..|+++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555666667777777777777777665555 55566777777777777777777777777777777777777777777
Q ss_pred HcCCChHHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKMER 474 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~ 474 (510)
..|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777776653
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=5.6e-07 Score=72.93 Aligned_cols=129 Identities=9% Similarity=-0.067 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 457778888999999999999999998863 446678888888999999999999999999875 34467788899999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHH--HHHHHhhCCHHHHHHHHHHHHh
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGAL--LGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
+...|++++|...+++..+..| +...+..+ +..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999876666 44455333 3347788999999999998763
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=8.9e-08 Score=83.46 Aligned_cols=181 Identities=8% Similarity=-0.035 Sum_probs=136.1
Q ss_pred cccChhhHHHHhcccCC--C-ChhhHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCch--------------
Q 046354 289 FQLDVNSARLAFERLEA--K-DVVSWTAM-------ILAYSNHGHGFQVFRLFARMLKSGTKPDEI-------------- 344 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 344 (510)
..++...|.+.|.+... | ....|..+ ...+.+.++..+++..++.-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46899999999999876 3 34578877 5667776777777776665543 444322
Q ss_pred --------hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCC-C--cHH
Q 046354 345 --------TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE-R--DHV 413 (510)
Q Consensus 345 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--~~~ 413 (510)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+...... | ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1122455677899999999999998753 3533366677778999999999999998766332 2 134
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQ--PS-SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+..+..++...|++++|+..|++..... |. .+......+.++.+.|+.++|..+|+++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888889999999999999999998433 43 344688899999999999999999999983
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.9e-07 Score=71.63 Aligned_cols=110 Identities=14% Similarity=-0.013 Sum_probs=74.6
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 419 (510)
.+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++..+..| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444455555555555555543 2333 44556666777777777777777777665555 566778888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
..+...|++++|...++++++..|+++..+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999998877776666543
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=6.6e-08 Score=93.20 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=103.3
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455677889999999999999875 233578889999999999999999999999887777 67789999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCChHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV--HAARGEWDEFAQVRK 470 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 470 (510)
.|++++|...|+++++..|+++..+..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998888888 888999999999987
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=5.1e-07 Score=76.01 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=75.2
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhC---CCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CC-c----H
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYG---FKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ER-D----H 412 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~----~ 412 (510)
.+..+...+...|++++|...+++..+... ..| ...++..+...+...|++++|...+++..+. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444444455555555555555555443210 111 2334555666666667766666666554432 12 1 2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CCch----hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQP--SSSG----AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++..+...+...|++++|...+++.++..+ .++. .+..++.++...|++++|.+.+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3566667777778888888888888774322 1111 24677778888888888888887776
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3.4e-07 Score=70.70 Aligned_cols=97 Identities=19% Similarity=0.064 Sum_probs=87.5
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..++..+...|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 455677788899999999999999998876656 6778889999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|...+++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999998773
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=6.3e-07 Score=79.92 Aligned_cols=188 Identities=11% Similarity=-0.031 Sum_probs=127.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 99 (510)
+...+..+...+.+.|++++|+..|++.....| +...|..+..++.+.|++++|...++...+ .+...+..+..+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566788888999999999999999999998877 677888899999999999999999999966 3557888999999
Q ss_pred HcCCChHHHHHHHHhccccCCCh-hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNV-VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 178 (510)
...|++++|...|++..+..|+. ..+...+... .+..........-......+.....
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA---------------------LRIAKKKRWNSIEERRIHQESELHS 141 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH---------------------HHHHHHHHHHHHHHTCCCCCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999987752321 1111111110 0111111111122222244444444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 046354 179 AMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARN-GPEGAAMKLLNLMFQS 234 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~ 234 (510)
.+... ..|+.++|.+.++...+ |+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 142 ~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 142 YLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44332 36889999998888766 33 23333444444444 6688899999887653
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=2.8e-07 Score=74.56 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|..+..+|.+.|++++|...++++++++|+++..|..++.+|...|++++|...|++..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666554
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=1.4e-07 Score=86.52 Aligned_cols=142 Identities=6% Similarity=-0.073 Sum_probs=81.8
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 349 (510)
...+..+...+ .+.|++++|...|++... |+...+ ..+.+..+ .. .....|..+
T Consensus 147 a~~~~~~g~~~-----~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~-~~-------~~~~~~~nl 202 (336)
T 1p5q_A 147 STIVKERGTVY-----FKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA-QA-------LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-HH-------HHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-HH-------HHHHHHHHH
Confidence 34566667777 889999999999987764 221000 00111000 00 012344455
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
..++...|++++|...++++.+. .+.+...+..+..+|...|++++|...|+++.+..| +...+..+...+...|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666553 123455566666666677777777777766665555 455666677777777777
Q ss_pred HHH-HHHHHHHH
Q 046354 429 RMA-DYIGERLI 439 (510)
Q Consensus 429 ~~A-~~~~~~~~ 439 (510)
++| ...|+++.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776 44555554
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=3.1e-07 Score=71.84 Aligned_cols=102 Identities=10% Similarity=-0.136 Sum_probs=78.8
Q ss_pred CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHH
Q 046354 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALL 419 (510)
Q Consensus 341 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 419 (510)
.+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++..+..| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556666777777778888888888777764 233566777788888888888888888887776556 566888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 420 GACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..+...|++++|...|+++++..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8899999999999999999988877
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=4.2e-06 Score=75.11 Aligned_cols=127 Identities=9% Similarity=-0.097 Sum_probs=81.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC---CC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-----cchhH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTK---PD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-----AEHYS 383 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 383 (510)
+...+...|++++|+..+++..+.... +. ..+++.+...|...|++++|..+++++.+.....|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 444556667777777777776643111 11 235666667777777777777777777632111222 14667
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHH-HHHHHHHHh
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMA-DYIGERLIE 440 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 440 (510)
.++..|.+.|++++|...+++..+..+ -..+|..+...|...|++++| ...+++++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 777778888888888877776543211 155777888888888888888 777887763
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=6.3e-07 Score=66.96 Aligned_cols=102 Identities=14% Similarity=-0.029 Sum_probs=77.1
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGALL 419 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 419 (510)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++..+..|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345666667777778888888888777764 2335666777788888888888888888877665554 66778888
Q ss_pred HHHHhh-CCHHHHHHHHHHHHhcCCCCc
Q 046354 420 GACRLH-GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 420 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..+... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888889988888888888764
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=1.7e-05 Score=69.15 Aligned_cols=180 Identities=9% Similarity=-0.073 Sum_probs=134.5
Q ss_pred hcCChhhHHHHHHhccccCCC-hhHHHHH-------HHHHHhcCChhhHHHHHHhhcc--C-------C-----------
Q 046354 37 RNHDLPKAEALFRAMPESQRN-IVAESAM-------IDGYVKAGRVDEARKVFDEIYE--G-------N----------- 88 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~l-------i~~~~~~~~~~~A~~~~~~~~~--~-------~----------- 88 (510)
+.+++..|.+.|.++....|+ ...|..+ ...+.+.++..++...+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 689999999999999988784 5677777 4666666666666666665533 1 1
Q ss_pred ----hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 89 ----VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 89 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
...+..+...+...|++++|.++|+.+....|+.. ....+...+.+.+++++|+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---------------------~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---------------------VAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---------------------HHHHHHHHHHHcCCHHHHHH
Confidence 11345567788899999999999999987545432 22233446788899999999
Q ss_pred HHhhCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 165 YFVQMPN-KD----IVAWNAMITAYVDAGNMAQASELFNLMPQ-R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 165 ~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.|+.... ++ ...+..+..++...|++++|+..|++... + ..........++.+.|+.++|...|+++..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987763 32 23678889999999999999999998853 3 234567778889999999999999999988
Q ss_pred CCCCCC
Q 046354 234 SRFMPN 239 (510)
Q Consensus 234 ~g~~p~ 239 (510)
. .|+
T Consensus 237 ~--~P~ 240 (282)
T 4f3v_A 237 T--HPE 240 (282)
T ss_dssp H--SCC
T ss_pred c--CCc
Confidence 4 455
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.6e-06 Score=72.98 Aligned_cols=155 Identities=14% Similarity=-0.009 Sum_probs=115.4
Q ss_pred ccccChhhHHH---HhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-CchhHHHHHHhcCcCCcH
Q 046354 288 GFQLDVNSARL---AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKP-DEITFVGVLSDCSHAGLV 359 (510)
Q Consensus 288 ~~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 359 (510)
...|++++|.+ .+.........++..+...+...|++++|...+++.... |..| ....+..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56789999999 665543345678889999999999999999999988762 2222 234677778888999999
Q ss_pred HHHHHHHHHHHHhhCCCC-C----cchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCc----HHHHHHHHHHHHhhCC
Q 046354 360 EKGRKTFNLMSRAYGFKP-R----AEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERD----HVVLGALLGACRLHGD 427 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~ 427 (510)
++|...+++..+...-.+ + ...+..+...+...|++++|...+++..+. .++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999998876422223 2 345678889999999999999998876532 112 2346778888999999
Q ss_pred HHHHHHHHHHHHhcC
Q 046354 428 VRMADYIGERLIELQ 442 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~ 442 (510)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998554
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=8.2e-07 Score=85.16 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=111.5
Q ss_pred ccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.+++++|...|+.... .....|..+...|.+.|++++|...|++..+. .|+...+ . .+...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH---
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH---
Confidence 3445555555544333 13346667777777788888888888777763 2222110 0 01100
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.... .....|..+..+|.+.|++++|+..++++.+..| +...|..+..+|...|++++|...|+++++++|++
T Consensus 311 -~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 -ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp -HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 0100 1235677889999999999999999999887766 67789999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCChHHHH-HHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQ-VRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 473 (510)
...+..++.++...|++++|.+ .++.|.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988774 355443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=3.9e-07 Score=69.49 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=73.1
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|...++.+.+. -+.+...+..+..++.+.|++++|+..+++..+..| +...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555667778888888888888764 233677777888888888888888888888876667 56688888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCc
Q 046354 425 HGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.|++++|...++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999988888764
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=5e-07 Score=69.76 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=60.9
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--------HHHHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--------HVVLGAL 418 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l 418 (510)
..+...+...|+++.|...++...+. .+.+...+..+...+...|++++|...+++..+..|+ ..++..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33444444445555555555554442 1223444455555555555555555555554433221 4566667
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
...+...|++++|...++++++..| ++.....+..+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777777888888888888777777 35555555555443
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.40 E-value=2.4e-06 Score=65.80 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=75.8
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc---chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHH
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA---EHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGA 421 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~ 421 (510)
+...+...|++++|...|+.+.+. .+.++ ..+..+..++.+.|++++|...+++..+..|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444556677777777777777764 12223 36667777888888888888888877655553 5567788888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+...|++++|...|+++++..|+++........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8999999999999999999999887655444433
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=1.7e-07 Score=71.16 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=72.6
Q ss_pred cCCcHHHHHHHHHHHHHhhC--CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYG--FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
..|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...+++..+..| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357778888888888753 2 122456778888889999999999999998876667 567888888999999999999
Q ss_pred HHHHHHHHhcCCCCchhH
Q 046354 432 DYIGERLIELQPSSSGAY 449 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~ 449 (510)
...++++++..|+++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999999987653
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=3.5e-07 Score=76.83 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=47.7
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CCh----------------hhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDV----------------VSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
.+..+...+ ...|++++|...|++... .+. ..|..+..+|...|++++|+..+++.
T Consensus 40 ~~~~~g~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 40 DIKEEGNEF-----FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344556666 889999999999987754 121 34444444445555555555555544
Q ss_pred HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 335 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
.+.. +.+...+..+..++...|++++|...|++..
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4431 2223333334444444444444444444443
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=2.6e-06 Score=76.86 Aligned_cols=231 Identities=11% Similarity=0.009 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
++.+-....+.+..++|++++++++. +.|+..|. |+.....+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~yta-------------------------------Wn~R~~iL----- 98 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR--MNPAHYTV-------------------------------WQYRFSLL----- 98 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHH-------------------------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHHH-------------------------------HHHHHHHH-----
Confidence 33444444556667789999999877 34443332 11111111
Q ss_pred cccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhc-C-ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH-
Q 046354 288 GFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNH-G-HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE- 360 (510)
Q Consensus 288 ~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~- 360 (510)
...| .++++...++.+.. .+..+|+.-...+.+. + ++++++++++.+.+.. +-|...|+.-...+.+.|..+
T Consensus 99 ~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 2333 46677777776654 3445666655555554 5 7778888887777642 344555555444444444444
Q ss_pred -------HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC-------hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 361 -------KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ-------VKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 361 -------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
+++++++++.+. .+-|...|+....++.+.++ ++++++.++++....| |...|+.+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777764 23355666666666666665 5777777777665566 566776666655555
Q ss_pred CCH--------------------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 426 GDV--------------------RMADYIGERLIELQ------PSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 426 ~~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
|+. .........+.... +.++.+...++.+|.+.|+.++|.++++.+.....++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 443 22222222222221 3455557778888888888888888888876444443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=6.2e-07 Score=69.21 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS-------SGAYVL 451 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~ 451 (510)
..+..+...+...|++++|...+++..+..| +...+..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4567788899999999999999998876655 67788889999999999999999999999888776 777999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 046354 452 SANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++.+|...|++++|.+.+++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998873
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=6.4e-05 Score=67.85 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=148.5
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH
Q 046354 184 YVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259 (510)
Q Consensus 184 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 259 (510)
..+.+..++|+++++.+.. .+..+|+.--..+...| ++++++..++.+.... |.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK-------------------- 121 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK-------------------- 121 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC--------------------
Confidence 3344455678888877765 34456777666777777 4888888888887643 22
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccc-c-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh--------h
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQ-L-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF--------Q 326 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--------~ 326 (510)
+..+|+.....+ ... + +.+++..+++++.+ .|..+|+--.-.+.+.|.++ +
T Consensus 122 -----------ny~aW~hR~wlL-----~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 122 -----------SYQVWHHRLLLL-----DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp -----------CHHHHHHHHHHH-----HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred -----------cHHHHHHHHHHH-----HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 112222221111 222 3 56677777777776 34556666555555555555 8
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-------HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh----
Q 046354 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-------VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV---- 395 (510)
Q Consensus 327 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 395 (510)
+++.++++.+.. +-|...|+.....+.+.+. +++++++++++... .+-|...|+.+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 999999999864 4566778777777776665 67888888888864 344677777766666666653
Q ss_pred ----------------HHHHHHHhhCCCC-------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHH
Q 046354 396 ----------------KEAMRVVSKMPPH-------ERDHVVLGALLGACRLHGDVRMADYIGERLI-ELQPSSSGAYVL 451 (510)
Q Consensus 396 ----------------~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~ 451 (510)
....++..++... .+....+..++..|...|+.++|.++++.+. +.+|-....+.-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 3445555555433 2577888999999999999999999999987 778876555554
Q ss_pred HHH
Q 046354 452 SAN 454 (510)
Q Consensus 452 l~~ 454 (510)
.+.
T Consensus 343 ~~~ 345 (349)
T 3q7a_A 343 RRR 345 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=1.3e-06 Score=78.50 Aligned_cols=153 Identities=9% Similarity=-0.112 Sum_probs=117.3
Q ss_pred ccccChhhHHHHhcccCCC-----C----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCc----hhHHHHHHhc
Q 046354 288 GFQLDVNSARLAFERLEAK-----D----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDE----ITFVGVLSDC 353 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~li~~~ 353 (510)
...|++++|...+++.... + ...+..+...+...|++++|+..+++..+.... ++. .+++.+...|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 7889999999999887651 1 113334666777788999999999999984322 221 2588888999
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCC----C-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFK----P-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGA 421 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~ 421 (510)
...|++++|..+++++.+...-. + ...++..+...|.+.|++++|...+++..+. .+ -..+|..+..+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999998532111 1 2347788999999999999999999877543 12 25688889999
Q ss_pred HHhhC-CHHHHHHHHHHHHh
Q 046354 422 CRLHG-DVRMADYIGERLIE 440 (510)
Q Consensus 422 ~~~~~-~~~~A~~~~~~~~~ 440 (510)
+...| ++++|...+++++.
T Consensus 246 ~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 246 LRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHH
Confidence 99999 56999999999884
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=3.3e-06 Score=64.89 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CC--------hhhHHH
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GN--------VYSWTS 94 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~--------~~~~~~ 94 (510)
.++..+...+.+.|++++|+..|++..+..| +...|+.+..+|...|++++|.+.++..++ |+ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4567788899999999999999999998877 567888899999999999999999999854 22 136777
Q ss_pred HHHHHHcCCChHHHHHHHHhccccCCChhhHH
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 126 (510)
+..++...|++++|++.|++.....||.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 88889999999999999999877667765443
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=6.7e-07 Score=82.05 Aligned_cols=145 Identities=9% Similarity=-0.046 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45666777777888888888888887764 344331 223344444432221 1267778888
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHcCCChHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV-HAARGEWDEFA 466 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 466 (510)
|.+.|++++|...+++..+..| +...|..+..+|...|++++|...|+++++++|+++..+..+..+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876666 667888899999999999999999999999999988888888877 44566777888
Q ss_pred HHHHHHH
Q 046354 467 QVRKKME 473 (510)
Q Consensus 467 ~~~~~~~ 473 (510)
..|+.|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 8888776
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.1e-06 Score=84.53 Aligned_cols=113 Identities=8% Similarity=-0.017 Sum_probs=50.4
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554433 233445555555555555555555555555431 2223344444455555555555555
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhH--HhhcCChHHHHHHHh
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADI--LRRAGQVKEAMRVVS 403 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (510)
.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555443 11122333333333 444455555555544
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.32 E-value=1.2e-06 Score=81.38 Aligned_cols=138 Identities=6% Similarity=-0.095 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
.|..+...+.+.|++++|+..|++..+. .|+.. .... .+...+. .+.+...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHHH
Confidence 4666777777788888888887777652 01100 0000 0111100 112456788899999
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
.+.|++++|+..+++..+..| +...+..+..+|...|++++|...|++++++.|++...+..+..++...++.+++.+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987777 6778999999999999999999999999999999999999999999988888777643
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.5e-07 Score=69.29 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYV 450 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 450 (510)
+...+..+...+.+.|++++|.+.+++..+..| +...+..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345667788888899999999999998876666 67788889999999999999999999999999998 77788
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~ 470 (510)
.++.++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888988888888776554
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=6e-07 Score=72.60 Aligned_cols=130 Identities=12% Similarity=-0.011 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..+......+.+.|++++|+..|++....- |+ .. ......+.+ +..+ .+.+...+..+..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~------~~-~~~~~~~~~-----~~~~-----~~~~~~~~~nla~~ 72 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT------LI-LREKPGEPE-----WVEL-----DRKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------HH-HTSCTTSHH-----HHHH-----HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------hc-ccCCCCHHH-----HHHH-----HHHHHHHHHHHHHH
Confidence 456666677777777777777777766530 00 00 000000000 0000 12234677888999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS-GAYVLSANVHA 457 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 457 (510)
|.+.|++++|...+++..+..| +...|..+..+|...|++++|...|+++++++|+++ .....+..+..
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887767 677899999999999999999999999999999987 44555544433
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=1.3e-06 Score=70.34 Aligned_cols=93 Identities=18% Similarity=0.086 Sum_probs=59.6
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCC-----CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------Cch
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPH-----ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPS------SSG 447 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 447 (510)
++..+...+...|++++|...+++..+. .| ...++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3344555555555555555555544321 11 1345666777778888888888888888744321 123
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++.++...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 47778888888899988888888766
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.22 E-value=3.4e-06 Score=63.54 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=44.2
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|...+++..+..| +...+..+...+...|++++|...|+++++.+|+++..+..++.+|...|++++|...+++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443444 444555555666666666666666666666666666666666666666666666666666554
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.5e-06 Score=80.35 Aligned_cols=165 Identities=6% Similarity=-0.123 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh---CCCC-Ccc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY---GFKP-RAE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~ 380 (510)
++..+...|...|++++|.+.+..+... +..++. ...+.+-..+...|+.+.+..+++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788899999999999999887653 111222 123334455667889999999988876532 1122 234
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCc----
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSS---- 446 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~---- 446 (510)
++..++..|...|++++|..++++.... .| ...++..++..|...|++++|...+++++... +.++
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6678899999999999999988765321 23 34478888899999999999999999988543 3322
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..+..++..+...|++++|.+.+.....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2366777888889999999999887763
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=2.2e-06 Score=78.54 Aligned_cols=153 Identities=7% Similarity=-0.073 Sum_probs=82.9
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
...+..+...+ .+.|++++|...|++....+.... .+...|+..++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~-----~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSL-----FKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHT-----CSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 44566667777 899999999999988664221111 1222333444433221 136778888
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH-HHhhCCHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA-CRLHGDVR 429 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~ 429 (510)
++.+.|++++|...+++..+. .+.+...+..+..+|...|++++|...|++..+..|+ ...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999874 2346788889999999999999999999999988774 4455555544 33457788
Q ss_pred HHHHHHHHHHhcCCCCc
Q 046354 430 MADYIGERLIELQPSSS 446 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~ 446 (510)
.+...|+++++..|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 89999999998888765
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=2.7e-06 Score=81.40 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=97.5
Q ss_pred cCcCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGA 417 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~ 417 (510)
+...|++++|..++++..+... +-| ...+++.|+.+|...|++++|..++++..+ ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578999999998888776431 112 245778899999999999999988876643 2443 348899
Q ss_pred HHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|...|...|++++|+.++++++ -+.|++|.+ ...+..++.+.|++++|...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 467888777 5577788999999999999999998
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.3e-05 Score=76.33 Aligned_cols=188 Identities=10% Similarity=-0.038 Sum_probs=133.3
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCCh------------------hHHHHHHHHHHhcCChhhHHHHHHhhcc-----CC
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNI------------------VAESAMIDGYVKAGRVDEARKVFDEIYE-----GN 88 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~------------------~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~ 88 (510)
.+.+.+.|++++|++.|..+.+..|+. ..+..|...|...|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456778999999999999987764321 2467788999999999999999988743 11
Q ss_pred h----hhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 89 V----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 89 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
. .+.+.+-..+...|+.+.|..+++..... ....++ ......++..++..+...|++++|..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-------------AKREKR-VFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-------------HHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------HHHhCc-cHHHHHHHHHHHHHHHHccChHHHHH
Confidence 1 23344444555678899999988877653 000000 01123455667788888889998988
Q ss_pred HHhhCC----C-----CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHHHHHhcCChHHHH
Q 046354 165 YFVQMP----N-----KDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN-----VWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 165 ~~~~~~----~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~ 225 (510)
+++... . ....++..++..|...|++++|...+++... ++ ...+..+...+...|++++|.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 887764 1 1235788889999999999999999887653 22 245667777788899999999
Q ss_pred HHHHHHHH
Q 046354 226 KLLNLMFQ 233 (510)
Q Consensus 226 ~~~~~m~~ 233 (510)
..|.+...
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877754
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=4.9e-06 Score=59.34 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=64.5
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+...|++++|...+++..+..| +...+..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44566677778888888888888887765555 56677788888888888888888888888888888888888888877
Q ss_pred HcC
Q 046354 458 ARG 460 (510)
Q Consensus 458 ~~g 460 (510)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.14 E-value=1.1e-05 Score=58.83 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...+..+...|...|++++|+..|+++++.+|+++..|..++.+|...|++++|+..+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566788888888889999999999999999999988889999999999999999999888776
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=7.1e-05 Score=67.20 Aligned_cols=178 Identities=11% Similarity=-0.043 Sum_probs=121.2
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-HHHHHHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHG--HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-VEKGRKTF 366 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~ 366 (510)
++++..+++.+.. .+..+|+.-.-.+.+.| .+++++.+++.+.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4556666665554 45567777666666767 4788999999998864 5566677666666666676 58888888
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhc--------------CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh------
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRA--------------GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH------ 425 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~------ 425 (510)
+.+.+. .+-|...|+.....+.+. +.++++++.+.+.....| |..+|+-+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888875 244566666555555444 457888888888776677 666776555555444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HHcCCChHHHHHHHHHH
Q 046354 426 -----GDVRMADYIGERLIELQPSSSGAYVLSANVH---AARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 473 (510)
+-++++++.++++++..|++.-.+..++... ...|..++...+++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4578999999999999999855444444332 23566777777887776
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=1.8e-06 Score=67.81 Aligned_cols=117 Identities=13% Similarity=-0.104 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC-CCcchhHhHHhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK-PRAEHYSCLADI 388 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 388 (510)
.+......+...|++++|+..|++.++. .|+...- . +. ... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~--------~------a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPE--------E------AF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTT--------S------CC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcch--------h------hh----------hhccchHHHHHHHHHH
Confidence 3555566666777777777777777763 3331100 0 00 000 012266777777
Q ss_pred HhhcCChHHHHHHHhhCCCC-------CCc-HHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPH-------ERD-HVVL----GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
+.+.|++++|+..+++..+. .|+ ...| .....++...|++++|+..|++++++.|++......+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 88888888887777776666 884 4588 8999999999999999999999999999886554433
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=1e-06 Score=69.02 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh----------HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV----------KEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
+.+++|.+.++...+. -+.+...|..+..++...|++ ++|+..|++..+..| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455555555555543 122444555455555554443 255555555444444 333455555554443
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCC
Q 046354 426 G-----------DVRMADYIGERLIELQPSS 445 (510)
Q Consensus 426 ~-----------~~~~A~~~~~~~~~~~p~~ 445 (510)
| ++++|+..|+++++++|++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2 4555555555555555543
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=5.9e-05 Score=74.02 Aligned_cols=171 Identities=6% Similarity=-0.112 Sum_probs=137.5
Q ss_pred cChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC
Q 046354 291 LDVNSARLAFERLEA---KDVVSWTAMILAYSNHGH----------GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 357 (510)
...++|.+.++++.. .+..+|+.--..+...|+ +++++..++.+.+.. +-+...|..-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888888776 344577776666666666 899999999999863 456668887777777888
Q ss_pred --cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh--------
Q 046354 358 --LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QVKEAMRVVSKMPPHER-DHVVLGALLGACRLH-------- 425 (510)
Q Consensus 358 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~-------- 425 (510)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.+.++++.+..| +..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999985 2336777777777778888 89999999999998877 777888887776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH
Q 046354 426 ------GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 426 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (510)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=7.7e-06 Score=75.83 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=79.9
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCC----------------CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPP----------------HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+..+...+.+.|++++|.+.|++..+ ..| +..+|..+..+|.+.|++++|+..++++++++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 45566777778888888877777664 334 4568889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++.++..++.+|...|++++|+..+++..+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999998774
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=8.4e-06 Score=65.36 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----c
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----A 379 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 379 (510)
.++..+...|...|++++|...+++..+.... ++. .++..+...+...|++++|...+++..+...-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35677788888899999999999887753111 111 36677778888899999999999887764211122 4
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC---C--C--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH---E--R--DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
..+..+...+...|++++|.+.+++..+. . + ...++..+...+...|++++|...++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 46677888899999999999988876532 1 1 234677788889999999999999999886543
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=7.8e-05 Score=66.92 Aligned_cols=231 Identities=7% Similarity=-0.057 Sum_probs=148.6
Q ss_pred HHhcCCHH-HHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 046354 184 YVDAGNMA-QASELFNLMPQ--R-NVWTWNAMIDRYARNGP----------EGAAMKLLNLMFQSRFMPNETTCTSILTS 249 (510)
Q Consensus 184 ~~~~g~~~-~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 249 (510)
..+.|.++ +|+.+++.+.. | +..+|+.--..+...+. +++++.+++.+....
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------------- 104 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------------- 104 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--------------
Confidence 34556554 68888887766 3 23445544333333332 456666666665422
Q ss_pred hhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc--ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC-
Q 046354 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL--DVNSARLAFERLEA---KDVVSWTAMILAYSNHGH- 323 (510)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~- 323 (510)
+.+..+|+.-...+ ...+ .++++..+++++.+ .|..+|+--.-.+...|.
T Consensus 105 -------------------PKny~aW~hR~wlL-----~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~ 160 (331)
T 3dss_A 105 -------------------PKSYGTWHHRCWLL-----SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 160 (331)
T ss_dssp -------------------TTCHHHHHHHHHHH-----HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred -------------------CCCHHHHHHHHHHH-----hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence 22333333333333 3444 47888888888776 566778877777778888
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC--------------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA--------------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
++++++.++.+++.. +-|...|+.....+... +.++++++++...... .+-|...|+.+-..+
T Consensus 161 ~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 161 PAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 589999999999864 44556666554443322 4578899999988874 344666666554444
Q ss_pred hhc-----------CChHHHHHHHhhCCCCCCcHHHHHHHHHHH-----HhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 390 RRA-----------GQVKEAMRVVSKMPPHERDHVVLGALLGAC-----RLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 390 ~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
.+. +.++++++.++++.+..|+. .|..+..+. ...|..++....+.++++++|-....|..+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 444 45788999999988778865 343322222 2457888999999999999999877777776
Q ss_pred HHH
Q 046354 454 NVH 456 (510)
Q Consensus 454 ~~~ 456 (510)
..+
T Consensus 317 ~~~ 319 (331)
T 3dss_A 317 SKF 319 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=7.9e-06 Score=78.32 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----------------HHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----------------HVVLGALL 419 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~l~ 419 (510)
+++++|...|+...+. .| ....+..+...+.+.|++++|...|++..+..|+ ..+|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555444443322 12 3445677788888899999999999888765553 47889999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998763
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=9e-06 Score=63.70 Aligned_cols=87 Identities=13% Similarity=-0.027 Sum_probs=74.3
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV----------RMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
-..+.+.+++|.+.++...+..| +...|..+..++...+++ ++|+..|+++++++|+...+|..++.+|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34567889999999998887777 777888888888877664 5999999999999999999999999999
Q ss_pred HHcC-----------CChHHHHHHHHHHH
Q 046354 457 AARG-----------EWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g-----------~~~~A~~~~~~~~~ 474 (510)
...| ++++|++.|++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 8875 89999999997763
No 201
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.89 E-value=1.2e-05 Score=73.74 Aligned_cols=215 Identities=12% Similarity=0.179 Sum_probs=149.9
Q ss_pred CCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
+.|++.+|++.|-+ -.|+..|..+|.+..+.|.+++-+..+.-.++...++.+=+.|+-+|++.++..+-.+++.
T Consensus 66 ~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~--- 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--- 140 (624)
T ss_dssp TSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---
T ss_pred ccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---
Confidence 34455555444322 3566778889999999999999999988888776666777789999999888776443322
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc----------------------CCChhhHHHHHHHHHhcCCcchhhH
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK----------------------LKNVVSWTTVVLGCAHNGLIAKLEV 143 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------~~~~~~~~~ll~~~~~~~~~~~a~~ 143 (510)
.||+.-...+..-|...|.++.|.-+|..+... ..++.||-.+-.+|...+.+.-|..
T Consensus 141 ~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 141 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 255555555555555566666555555444321 3567889999999999998888844
Q ss_pred HHHHH---------HHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------
Q 046354 144 ISWTT---------MCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------- 202 (510)
Q Consensus 144 ~~~~~---------l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 202 (510)
-..+. ++..|...|-+++.+.+++... .....+|+-|.-.|++- +.++..+.++....
T Consensus 221 cGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvir 299 (624)
T 3lvg_A 221 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 299 (624)
T ss_dssp HHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHH
T ss_pred hcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHH
Confidence 44443 3456778888998888888877 45667788887777765 56666666655443
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHH
Q 046354 203 --RNVWTWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 203 --~~~~~~~~li~~~~~~~~~~~A~~ 226 (510)
.....|..++-.|.+..+++.|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 245679999999999999987753
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=1.8e-05 Score=59.36 Aligned_cols=83 Identities=13% Similarity=-0.060 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|...+++..+. .+.+...+..+...|.+.|++++|...+++..+..| +...|..+...+...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777652 234667778888888899999999999888876666 56688888889999999999999999998
Q ss_pred hcCCCC
Q 046354 440 ELQPSS 445 (510)
Q Consensus 440 ~~~p~~ 445 (510)
+..|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877753
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00012 Score=56.92 Aligned_cols=108 Identities=10% Similarity=-0.058 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMAD 432 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~ 432 (510)
+++++|.++|++..+. | ++... |...|...+.+++|.+.|++..+ ..+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N---EMFGC--LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555543 3 11111 44444444555555555555442 2344455555555555 55666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
..|+++.+. .++..+..|+.+|.. .++.++|.+++++..
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 666666544 445556666666666 566666666666555
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=8.3e-05 Score=55.08 Aligned_cols=65 Identities=20% Similarity=0.083 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++...+..+...+...|++++|...|+++++..|+++..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999998773
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.72 E-value=0.00017 Score=51.35 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++...+..+..++...++ .++|...++++++.+|+++.+...++..+.+.|++++|+.+|+++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777777755444 68999999999999999999999999999999999999999998873
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.00021 Score=70.16 Aligned_cols=150 Identities=9% Similarity=-0.005 Sum_probs=119.4
Q ss_pred hcCC-hhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCcCCc----------HHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 320 NHGH-GFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSHAGL----------VEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 320 ~~g~-~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
+.|+ .++|++.++++... .|+. ..|+.--..+...|+ ++++++.++.+.+. .+-+..+|+.-..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3444 56789999999985 4554 456555555555555 89999999999975 3446777777777
Q ss_pred HHhhcC--ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc----
Q 046354 388 ILRRAG--QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIELQPSSSGAYVLSANVHAAR---- 459 (510)
Q Consensus 388 ~~~~~g--~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 459 (510)
++.+.| +++++.+.++++.+..| +..+|+.-...+.+.| .++++.+.++++++.+|.+.++|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 788888 67999999999987777 7889999888888888 899999999999999999999999999998875
Q ss_pred ----------CCChHHHHHHHHHH
Q 046354 460 ----------GEWDEFAQVRKKME 473 (510)
Q Consensus 460 ----------g~~~~A~~~~~~~~ 473 (510)
+.+++|++++++..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 44577777777555
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00014 Score=51.44 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|+..+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888888999999999999999999999999999999999999999999999999998773
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.66 E-value=3.5e-05 Score=56.13 Aligned_cols=68 Identities=10% Similarity=-0.099 Sum_probs=56.1
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.++..+..+..+|.+.|++++|+..|++..+..| +...|..+..+|...|++++|...|++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3566777888888899999999999988876666 5668888888899999999999999998877654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00022 Score=51.58 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
.+..+.+.|++++|...+++..+..| +.. .+..+..++...|++++|...|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45677888999999999998876667 556 78888889999999999999999999999998877632 344
Q ss_pred hHHHHHHH
Q 046354 463 DEFAQVRK 470 (510)
Q Consensus 463 ~~A~~~~~ 470 (510)
.++...++
T Consensus 78 ~~a~~~~~ 85 (99)
T 2kc7_A 78 MDILNFYN 85 (99)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 45555554
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00011 Score=70.32 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=72.4
Q ss_pred hHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---H
Q 046354 387 DILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---Y 449 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~ 449 (510)
..+..+|++++|+.++++..+ ..|+ ..+++.|...|...|++++|+.++++++ .+.|++|.+ +
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999988876542 1343 3488999999999999999999999998 456777766 8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..|+.+|..+|++++|+.++++...
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998873
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.55 E-value=0.00012 Score=68.75 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred hcCChHHHHHHHhhCCC-----C---CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---HHHHH
Q 046354 391 RAGQVKEAMRVVSKMPP-----H---ERD-HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---YVLSA 453 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~~~l~ 453 (510)
..|++++|+.++++..+ . .|+ ..+++.|..+|...|++++|+.++++++ .+.|++|.+ +..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35778888887765532 1 333 3488999999999999999999999998 356777766 88899
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 046354 454 NVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|..+|++++|+.++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998873
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.48 E-value=0.00035 Score=65.77 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=71.5
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC-----CCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH-----ERD----HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA--- 448 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~--- 448 (510)
+..+.+.|++++|+.++++..+. .|+ ..+++.+...|...|++++|+.++++++ -+.|++|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456788999999888766432 332 3478889999999999999999999998 345777666
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..|+.+|..+|++++|+.++++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998873
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00044 Score=49.86 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSG-AYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
....+...|++++|...++++++..|+++. .+..++.+|...|++++|++.|++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999 999999999999999999999998874333
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.0015 Score=50.56 Aligned_cols=111 Identities=10% Similarity=-0.090 Sum_probs=90.9
Q ss_pred CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHH
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKE 397 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 397 (510)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. .++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34433 667778888889999999999874 466777888888887 889999
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcC
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQ 442 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 442 (510)
|.+.|++..+. -+...+..|...|.. .+++++|...|+++.+..
T Consensus 80 A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988733 567778888888888 799999999999998764
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.0042 Score=56.00 Aligned_cols=73 Identities=15% Similarity=0.001 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeE
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQ 484 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 484 (510)
+..++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|...+++..+--|..|.+.|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 5555555555555556666666666666666643 344556666666666666666666655533333344433
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.00057 Score=64.24 Aligned_cols=95 Identities=7% Similarity=-0.109 Sum_probs=73.8
Q ss_pred cCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGALL 419 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~l~ 419 (510)
..|++++|..++++..+... +-| ...+++.|..+|...|++++|+.++++..+ ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788999999888776421 222 246788899999999999999998887653 2454 34789999
Q ss_pred HHHHhhCCHHHHHHHHHHHH-----hcCCCCchhH
Q 046354 420 GACRLHGDVRMADYIGERLI-----ELQPSSSGAY 449 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~~ 449 (510)
..|...|++++|+.++++++ -+.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999998 4568876553
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0025 Score=57.48 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=98.6
Q ss_pred CChhhHHHHHHHHH--hcCC---hhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCc----CCc-HHHHH---HHHHHHHH
Q 046354 306 KDVVSWTAMILAYS--NHGH---GFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSH----AGL-VEKGR---KTFNLMSR 371 (510)
Q Consensus 306 ~~~~~~~~l~~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~----~g~-~~~a~---~~~~~~~~ 371 (510)
.+...|...+.+.. ..++ ..+|..+|++..+. .|+. ..+..+..++.. .+. ..... ..++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46778888887643 3333 57899999999985 5664 455555555431 111 11111 12222111
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
....+.++.++..+...+...|++++|...++++....|+...|..+...+.-.|++++|...|++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112355778888888778888999999999999988889888888888889999999999999999999999875
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.14 E-value=0.00058 Score=52.84 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCCCC-C--cHHHHHHHHHHHHhhCCHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPPHE-R--DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~ 429 (510)
......+.+-|.+..+. + +++..+...+..++++.+ ++++++.+++...+.. | ....+-.|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34455666666666553 3 467777777888888887 5668888888776555 6 3557777888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhH
Q 046354 430 MADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~ 449 (510)
+|.+.++.+++.+|++..+.
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999886543
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.07 E-value=0.002 Score=45.74 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCCcchhHhHHhHHhhcCC---hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 376 KPRAEHYSCLADILRRAGQ---VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.++..+..+..++...++ .++|..++++..+..| +......+...+...|++++|...++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777778887765544 7899999999887777 56677888888999999999999999999998884
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0029 Score=46.10 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=53.2
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH--------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.-+..+...+.+.|+++.|...++...+. .+...++..|..++.+.|+++.|...+++++++.|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445666666666666666666554321 2356688889999999999999999999999999999776544
Q ss_pred H
Q 046354 452 S 452 (510)
Q Consensus 452 l 452 (510)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.032 Score=57.68 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCChHHHHH-HHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 7 TGKVKEATK-LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 7 ~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
.+++++|.+ ++..++ +......+++.+.+.|.++.|.++.+. |. .-.......|+++.|.++.+.+
T Consensus 612 ~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~-----~~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD-----QKFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp TTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH-----HHHHHHHHHTCHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc-----hheehhhhcCCHHHHHHHHHhh-
Confidence 355555555 443222 112225555556666666666655421 11 1133345567777777766554
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
.+...|..|...+.+.|+++.|.+.|.++.+
T Consensus 679 -~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 -SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred -CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 2445677777777777777777777776654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0012 Score=62.07 Aligned_cols=101 Identities=10% Similarity=-0.086 Sum_probs=76.2
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVV 414 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~ 414 (510)
+..+...|++++|..++++..+... +.| ...+++.|+.+|...|++++|+.++++..+ ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567889999999888875321 122 245678899999999999999988876643 2443 347
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchhHH
Q 046354 415 LGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGAYV 450 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~~~ 450 (510)
++.|...|...|++++|+.++++++ -+.|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8999999999999999999999998 46788876643
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.002 Score=55.60 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=54.7
Q ss_pred hHHHHHHHhhCCCCCCc---HHHHHHHHHHHHh-----hCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH-cCCChH
Q 046354 395 VKEAMRVVSKMPPHERD---HVVLGALLGACRL-----HGDVRMADYIGERLIELQPSS-SGAYVLSANVHAA-RGEWDE 464 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 464 (510)
...|...+++..+..|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..++..++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555666666655665 4466666666666 377777777777777777764 7777777777766 377777
Q ss_pred HHHHHHHHH
Q 046354 465 FAQVRKKME 473 (510)
Q Consensus 465 A~~~~~~~~ 473 (510)
|.+++++..
T Consensus 259 a~~~L~kAL 267 (301)
T 3u64_A 259 FDEALDRAL 267 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777776
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.062 Score=55.46 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=22.9
Q ss_pred hcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
..|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 664 ~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555554443 233455555555555555555555555443
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.74 E-value=0.0015 Score=60.27 Aligned_cols=331 Identities=12% Similarity=0.055 Sum_probs=178.5
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcC
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 136 (510)
.+..|+.|..+..+.+++.+|.+-|- ...|...|..+|....+.|.+++-...+...++...+...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 34566667777777676666655332 2245556777777777777777777777666665444444556666666665
Q ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 046354 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ------------- 202 (510)
Q Consensus 137 ~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 202 (510)
+..+. ++.. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 131 rL~el-------------------------Eefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 131 RLAEL-------------------------EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp SSSTT-------------------------TSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred cHHHH-------------------------HHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 55432 1111 34444444555555555555555555544321
Q ss_pred -----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcc
Q 046354 203 -----------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271 (510)
Q Consensus 203 -----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 271 (510)
.++.||-.+-.+|...+.+.-|.-.--.+. ..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI-------------------------------------vh 228 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------------------VH 228 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------------------------------------CC
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc-------------------------------------cc
Confidence 466778888888888777765543322221 11
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
+.-...++..| -..|.+++-..+++.... .....|+-|.-.|++- ++++..+.++.... +.| .--
T Consensus 229 adeL~elv~~Y-----E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipK 296 (624)
T 3lvg_A 229 ADELEELINYY-----QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPK 296 (624)
T ss_dssp SSCCSGGGSSS-----STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTT
T ss_pred HHHHHHHHHHH-----HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHH
Confidence 12233456666 888999988888887664 5667888888888775 56666665544322 222 224
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHH------h-hCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSR------A-YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~------~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 421 (510)
+|++|.+...+.++.=++....+ . -..+|+..-...+-+...+..+.+---+.+.-..+..|.. .+-|+.+
T Consensus 297 viracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l--L~DLL~v 374 (624)
T 3lvg_A 297 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL--LNDLLMV 374 (624)
T ss_dssp THHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT--SHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH--HHHHHHh
Confidence 56677776666666554432211 0 0011112222233344445555443333333333223432 3445555
Q ss_pred HHhhCCHHHHHHHHHHHH----------hcCC-CCchhHHHHHHHHHHcCCChHH
Q 046354 422 CRLHGDVRMADYIGERLI----------ELQP-SSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~----------~~~p-~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+...=|..++++++++.- ...+ ++...-..+-.+|...++++.-
T Consensus 375 L~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 375 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp HCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 555555566666666532 1112 3333355566667777766543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.17 Score=40.23 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|.++|.+... +..+.-.|.-.|+.+.-.++-+...
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467888888877766 4567788888888888888888888888877 5666666666777766555544432
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
..+ -++.....+...|+++++.++|.+..+
T Consensus 88 ~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 88 TRE--DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HTT--CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HCc--cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 221 234444455567888888887766544
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.041 Score=40.88 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH---HHHHHhhCCCCC-C--cHHHHHHHHHHHHhhCCHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE---AMRVVSKMPPHE-R--DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...+.+-+...... | .|+..+-..+..++.+..+... ++.+++...... | .....-.|.-++.+.|++.+|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555443 3 3666666667777777776555 777777776554 5 3445666777899999999999
Q ss_pred HHHHHHHhcCCCCchhHHH
Q 046354 433 YIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~ 451 (510)
+.++.+++.+|++..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999999766443
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.39 E-value=0.15 Score=37.99 Aligned_cols=141 Identities=10% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+ -.|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh----hcCc----------HhhhcHHH
Confidence 34468888888888888764 2444555555444444444555555555533 2232 23566666
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhh
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRV 476 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 476 (510)
....+-.+- .+...+...+.....+|.-++-.+++..++...|.+|.....++++|.+.|+..+|.+++.+.. +|+
T Consensus 80 Vi~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 666665554 4445566777888889999999999998766777778889999999999999999999999988 666
Q ss_pred cc
Q 046354 477 KK 478 (510)
Q Consensus 477 ~~ 478 (510)
+.
T Consensus 157 kE 158 (172)
T 1wy6_A 157 KE 158 (172)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.31 E-value=0.006 Score=47.17 Aligned_cols=80 Identities=8% Similarity=-0.068 Sum_probs=63.6
Q ss_pred hHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCChHHHHH
Q 046354 395 VKEAMRVVSKMPPH-ERDHVVLGALLGACRLHG---DVRMADYIGERLIELQ-P-SSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 395 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+..+.+.|.+..+. .++..+...+..++.+.+ +.++++.+++...+.+ | ++...+..++-+|.+.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555443222 468888888999999987 7779999999999888 6 5577889999999999999999999
Q ss_pred HHHHHH
Q 046354 469 RKKMER 474 (510)
Q Consensus 469 ~~~~~~ 474 (510)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997763
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.26 E-value=0.99 Score=44.32 Aligned_cols=115 Identities=8% Similarity=-0.065 Sum_probs=74.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCch----hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEI----TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
.+++.|...|......+ ..+.. ....+.......+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998887643 22322 2233444555666345566666665432 3444445555566668899999
Q ss_pred HHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 398 AMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 398 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
|...|+.+....++ ....-=+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999854332 33233345567778999999999999864
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.022 Score=41.23 Aligned_cols=65 Identities=11% Similarity=-0.038 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQ-------PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+...+..+...+...|++..|...|+.+++.. +..+..+..|+.+|.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999999643 234556999999999999999999999987643
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.40 E-value=0.022 Score=49.24 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhCCCCC---cchhHhHHhHHhh-----cCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhh-CC
Q 046354 359 VEKGRKTFNLMSRAYGFKPR---AEHYSCLADILRR-----AGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLH-GD 427 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~-~~ 427 (510)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+..|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34555555555543 454 4456666666666 47888888888887766773 56666677777664 88
Q ss_pred HHHHHHHHHHHHhcCCC
Q 046354 428 VRMADYIGERLIELQPS 444 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~ 444 (510)
.++|.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877666
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.83 Score=36.26 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHH
Q 046354 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144 (510)
Q Consensus 65 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 144 (510)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~-------------- 68 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSF-------------- 68 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHH--------------
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHH--------------
Confidence 34556778888888887766 4566788888888888888888888888765 222222
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 223 (510)
.|...|+.+....+-+... .. -++....++.-.|+++++.++|.+..+.. ..+......|..+.
T Consensus 69 -------Ly~~tg~~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 69 -------LYLVTGDVNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAA 133 (177)
T ss_dssp -------HHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHH
T ss_pred -------HHHHhCCHHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHH
Confidence 2233333333332222111 11 13334445667788888888887766511 11122223566777
Q ss_pred HHHHHHHH
Q 046354 224 AMKLLNLM 231 (510)
Q Consensus 224 A~~~~~~m 231 (510)
|.++.+++
T Consensus 134 a~~~~~~~ 141 (177)
T 3mkq_B 134 ASAFLEQA 141 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777665
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.97 E-value=0.23 Score=37.93 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=35.6
Q ss_pred CChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 393 GQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
++.++|.++|+.+.+. +-=...|.....--.++|++..|.+++.+++++.|.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 4555555555554321 111445555555566777777777777777777777655444433
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=1.7 Score=40.95 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred cCChhhHHHHHHhcccc-------CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhh---HHHHHHHHHcCCChHH
Q 046354 38 NHDLPKAEALFRAMPES-------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDE 107 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~-------~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 107 (510)
.|++++|++-+-.+.+. .........++..|...|+++...+.+..+.+.-... -..+++ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~---------~ 99 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ---------K 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH---------H
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH---------H
Confidence 36777887776555433 1245667788899999999998877776664322111 111221 1
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHh--cCCc--chhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CC-C----h
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAH--NGLI--AKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NK-D----I 174 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~--~~~~--~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~----~ 174 (510)
+...+..... ++..+...++..... .|.+ +.-.......++..+...|++.+|.+++..+. .. + +
T Consensus 100 ~~~~l~~~~~--~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 100 VMEYLKSSKS--LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHHCT--THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHhcCCc--hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1222222221 233333333332211 1111 11133455678889999999999999998875 11 1 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--------RN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
..+..-++.|...+++.+|..++.++.. |+ ...+...+..+...+++.+|.+.|.+...
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4667778899999999999988887642 11 24467778888889999999988888755
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.68 E-value=0.072 Score=40.61 Aligned_cols=48 Identities=10% Similarity=-0.119 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|.++|.++|+.+++....-+..|...+..-.++|+...|++++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 455555555555544433333334444444555555555555554443
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.58 E-value=3.8 Score=40.21 Aligned_cols=378 Identities=10% Similarity=0.002 Sum_probs=193.9
Q ss_pred CCCChHHHHHHHhhcCCCChhhH---HHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSC---ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
+.|++..+..+...+..-....| ..+...+ ....+.+...++++-.........-+..+..+.+.+++.....++.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 45777777777766643222333 2222211 2224555665555554432222333456677778888888888766
Q ss_pred hhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHH
Q 046354 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 161 (510)
. ...+...-.....+....|+..+|......+-.. ......+..++..+...|.....+ .-.-+......|+...
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~---~~~R~~~al~~~~~~~ 172 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA---YLERIRLAMKAGNTGL 172 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHTTCHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHCCCHHH
Confidence 6 3345555556777788889887777766665544 445667888888888777665422 2222344445566666
Q ss_pred HHHHHhhCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 162 AREYFVQMPNKDIV-AWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 162 a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
|..+...+. ++.. ....++..+.. ...+........ ++.. .+...+.-+.+. +.+.|...+......+.
T Consensus 173 a~~l~~~l~-~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~- 245 (618)
T 1qsa_A 173 VTVLAGQMP-ADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ- 245 (618)
T ss_dssp HHHHHHTCC-GGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-
Confidence 666555442 2221 12222222222 122222222211 1111 111112222222 45555555554432110
Q ss_pred CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH
Q 046354 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317 (510)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 317 (510)
.+.... ...+..+...
T Consensus 246 ~~~~~~----------------------------------------------------------------~~~~~~ia~~ 261 (618)
T 1qsa_A 246 LNEDQI----------------------------------------------------------------QELRDIVAWR 261 (618)
T ss_dssp CCHHHH----------------------------------------------------------------HHHHHHHHHT
T ss_pred CCHHHH----------------------------------------------------------------HHHHHHHHHH
Confidence 000000 0112223333
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+...+...++...+...... .++.......+....+.|+++.|...|+.+... ......-.-.+..++...|+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~ 337 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAE 337 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHH
Confidence 34445355677777765543 344444444445455779999999999988653 11233334567778889999999
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG-----AYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
|..+|+.+. .+. +|-.++.+ .+.|..... . .....+.... .....+..+...|....|...+..+
T Consensus 338 a~~~~~~~a--~~~--~fYg~lAa-~~Lg~~~~~----~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 338 AKEILHQLM--QQR--GFYPMVAA-QRIGEEYEL----K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp HHHHHHHHH--TSC--SHHHHHHH-HHTTCCCCC----C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCC--ChHHHHHH-HHcCCCCCC----C-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 999999987 332 33333322 222321000 0 0001111111 1234455678899999998887766
Q ss_pred H
Q 046354 473 E 473 (510)
Q Consensus 473 ~ 473 (510)
.
T Consensus 408 ~ 408 (618)
T 1qsa_A 408 V 408 (618)
T ss_dssp H
T ss_pred H
Confidence 5
No 238
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.32 E-value=1.9 Score=35.57 Aligned_cols=185 Identities=6% Similarity=0.043 Sum_probs=111.5
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCC
Q 046354 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88 (510)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 88 (510)
+.+....+.+.+..++...-...+..+.+.|..+..-.+.+.+.. ++...-...+.++.+.++.+....+.+.+..++
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~ 94 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLIKALKDED 94 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCC
Confidence 344444555555677877777788888888875544444444443 677777777788888887666666666666778
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh
Q 046354 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168 (510)
Q Consensus 89 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~ 168 (510)
..+....+.++.+.|+.+....+.+-+.+ ++...-...+.++ .+.|..+....+.+.
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL---------------------~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFAL---------------------GEIGDERAVEPLIKA 151 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHH---------------------HHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHH---------------------HHcCCHHHHHHHHHH
Confidence 88888888888887776544444444433 5544433333333 333443333333344
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCChhhHHHHHHHHHhcC
Q 046354 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYARNG 219 (510)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~~ 219 (510)
+..++..+-...+.++.+.|..+ +...+..+ ..++..+-...+.++.+.+
T Consensus 152 l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEIGGER-VRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HcCCCHHHHHHHHHHHHHhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 44677777777778888877743 44444333 3366666666666655544
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.02 E-value=1.4 Score=32.95 Aligned_cols=136 Identities=16% Similarity=0.082 Sum_probs=88.3
Q ss_pred HhcCChhhHHHHHHhhcc-CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 69 VKAGRVDEARKVFDEIYE-GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 69 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
.-.|.+++..++..+... .+..-||.+|--..-.-+-+-..++++.+-+. -|.
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi------------------------- 71 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------------------- 71 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG-------------------------
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCc-------------------------
Confidence 345777777777777654 34445565555444444545555555555432 111
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC--CChhhHHHHHHHHHhcCChHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM-PQ--RNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~li~~~~~~~~~~~A 224 (510)
...|+.......+-.+. .+.......++.....|+-|+-.+++..+ .. +++...-.+..+|.+.|+..+|
T Consensus 72 ------s~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 72 ------DKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp ------GGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhH
Confidence 22344444444444433 23344566678888999999999999884 32 6788888899999999999999
Q ss_pred HHHHHHHHHCCCC
Q 046354 225 MKLLNLMFQSRFM 237 (510)
Q Consensus 225 ~~~~~~m~~~g~~ 237 (510)
.+++.+.-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999888864
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.24 Score=49.62 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=50.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...|...|+++.|..+.+++....|..-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446678999999999999999999999999999999999999999999998774
No 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.16 E-value=3.1 Score=34.22 Aligned_cols=185 Identities=9% Similarity=0.088 Sum_probs=117.2
Q ss_pred CChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 39 HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 39 ~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
++.+....+.+.+. .++...-...+..+.+.+..+....+.+.+..++.......+.++.+.++.+....+.+.+..
T Consensus 16 ~~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~- 92 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKD- 92 (211)
T ss_dssp CCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-
T ss_pred cCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC-
Confidence 33333444444444 377777777788888888866666666666677877878888888887775555445444444
Q ss_pred CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 046354 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198 (510)
Q Consensus 119 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (510)
++...-...+. ++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+..
T Consensus 93 -~~~~vr~~a~~---------------------aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~ 150 (211)
T 3ltm_A 93 -EDGWVRQSAAV---------------------ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIK 150 (211)
T ss_dssp -SSHHHHHHHHH---------------------HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred -CCHHHHHHHHH---------------------HHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55444333333 34444444444444444457888888888888888888665555666
Q ss_pred hCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 199 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.+..++..+-...+.++.+.+. .++...+..+.+. ++...-...+.++..
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 6666888888888888888876 4566666666653 455555555554443
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.79 E-value=0.59 Score=35.35 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.|++.+--.+..++.+..+. .+++.+++......| .....-.|.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45666666677777776654 356666666554445 34455667778999999999999999999999998654
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.34 E-value=3.8 Score=33.28 Aligned_cols=93 Identities=9% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhh
Q 046354 12 EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91 (510)
Q Consensus 12 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 91 (510)
.-..+++.+..+|...-...+.++.+.+..+....+.+.+.. ++...-...+.++...++.+....+.+.+..++...
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~v 92 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV 92 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH
Confidence 334445555566666666666666666664444444444432 555555555566666666555444444445556555
Q ss_pred HHHHHHHHHcCCChH
Q 046354 92 WTSLISGYFKARQVD 106 (510)
Q Consensus 92 ~~~li~~~~~~g~~~ 106 (510)
....+.++.+.++.+
T Consensus 93 r~~a~~aL~~~~~~~ 107 (201)
T 3ltj_A 93 RQSAAVALGQIGDER 107 (201)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCcHH
Confidence 556666665555543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.22 E-value=0.82 Score=34.08 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
.|++.+--.++.++.+..+. .+++.+++...+..| ....+-.|.-++.+.|++++|.+..+.+++.+|++..+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 35555555666666666654 356666666554455 344666777888999999999999999999999986553
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.21 E-value=4.7 Score=43.27 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
...++..+...+.++.+.++..... .+....-.+..++...|++++|.+.|++....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~ 871 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 871 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3456677778888888877655443 44444455677888999999999999987653
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.19 E-value=0.46 Score=43.89 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=35.0
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...++..+...|++++|...+..+....| +...|..++.++...|+..+|.+.|++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555666666666666655554445 55566666666666666666666666654
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.76 E-value=0.22 Score=37.00 Aligned_cols=80 Identities=5% Similarity=-0.151 Sum_probs=58.2
Q ss_pred hHHHHHHHhhCCC-CCCcHHHHHHHHHHHHhhCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCChHHHHH
Q 046354 395 VKEAMRVVSKMPP-HERDHVVLGALLGACRLHGDVRM---ADYIGERLIELQ-P-SSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 395 ~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+..+.+-|.+... ..|+..+--.+.+++.+..+... ++.+++...+.+ | ........|+-++.+.|++++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444443321 24677777888888888776655 999999888665 4 3445578889999999999999999
Q ss_pred HHHHHH
Q 046354 469 RKKMER 474 (510)
Q Consensus 469 ~~~~~~ 474 (510)
.+.+.+
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997763
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.49 E-value=0.56 Score=36.57 Aligned_cols=27 Identities=4% Similarity=-0.131 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345668899999999999999998654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.62 E-value=10 Score=35.51 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh-CCCCC----cc
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY-GFKPR----AE 380 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~ 380 (510)
...|...|...|++.+|..++..+...-...+. ..+...++.|...+++..|..++.++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998643112222 245556778888999999999998875321 22222 23
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888899999888776654
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.29 E-value=9.4 Score=33.89 Aligned_cols=121 Identities=8% Similarity=-0.020 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCc--H------HHHHHHHHHHHHhhCC--CCCcchhHhHHhHHhhcCChHHHHHH
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGL--V------EKGRKTFNLMSRAYGF--KPRAEHYSCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~--~------~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (510)
+-..+.++++|......++..+..... + ..|+.+- .+. |- .-++.....+...|.+.|++.+|...
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS---~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWS---KKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHH---HHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH---hhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 444445566666555555554443322 1 1222222 222 42 33678888899999999999999988
Q ss_pred HhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHcCCChHHHHHHHHHH
Q 046354 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL-SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 402 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|--. ..+....+..++..+...+. |.....|.. .+--|.-.|+...|...++...
T Consensus 159 ~ilg--~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 159 LVLG--TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTTS--CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhc--CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8422 24444566555554444332 222223332 2233677889999999888877
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.36 E-value=1.7 Score=33.84 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=13.5
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
+..+..++...|++..|...|+...
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555566666666555543
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.22 E-value=3.7 Score=43.99 Aligned_cols=111 Identities=8% Similarity=-0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc---C-----------------
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---G----------------- 87 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~----------------- 87 (510)
...++..+...+..+-+.++...... ++..--.+..++...|++++|.+.|++... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34566677778888877776665544 222223456778888899999888877621 0
Q ss_pred ------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCCh-----hhHHHHHHHHHhcCCcchh
Q 046354 88 ------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNV-----VSWTTVVLGCAHNGLIAKL 141 (510)
Q Consensus 88 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-----~~~~~ll~~~~~~~~~~~a 141 (510)
-..-|..++..+-+.|.++.+.++-....+. .++. ..|..+...+...|+++.|
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0123677888888888888888777665544 2222 2477888888888998887
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.10 E-value=0.95 Score=33.74 Aligned_cols=66 Identities=9% Similarity=-0.132 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 408 HERDHVVLGALLGACRLHG---DVRMADYIGERLIELQPS-SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 408 ~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-.|+..+--.+.+++.+.. +..+++.+++...+.+|. ....+..|+-++.+.|++++|+++.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3677777777788877764 556799999999988774 35558888999999999999999999665
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.89 E-value=0.89 Score=31.81 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.=++.+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 3355666667777777888888888888888888888888888888765 2333455666554
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.74 E-value=0.98 Score=38.47 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=62.3
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDV 428 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~ 428 (510)
..+.|+.+++++....-.+. -+-|...-..|++.+|-.|++++|.+-++...+..|+.. .|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 45667777777766666653 344666666777777777777777776666654455433 22333322
Q ss_pred HHHHHHHHHHH--hcCC---CCchh-HHHHHHH--HHHcCCChHHHHHHHHHHHhhccccc
Q 046354 429 RMADYIGERLI--ELQP---SSSGA-YVLSANV--HAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 429 ~~A~~~~~~~~--~~~p---~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
+..=.++. +..| ..+.. ...+..+ ....|+.++|..+-+.+....+..++
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 22222222 1111 22222 3333333 34467777777777777644444443
No 256
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=88.70 E-value=20 Score=35.43 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
...++.-.|+++.|..++-.. ...+.+.+...+..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~ 335 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL 335 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc
Confidence 344555677788777766644 345555555555543
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.66 E-value=2.9 Score=31.62 Aligned_cols=80 Identities=9% Similarity=-0.129 Sum_probs=58.8
Q ss_pred hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG---DVRMADYIGERLIELQPS-SSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+....+-|..-....|+..+--.+.+++.++. +..+++.+++...+..|. .......|+-.+.+.|++++|+++.+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444445433213577777777888887765 556899999999988884 34457788889999999999999999
Q ss_pred HHHH
Q 046354 471 KMER 474 (510)
Q Consensus 471 ~~~~ 474 (510)
.+.+
T Consensus 102 ~lL~ 105 (144)
T 1y8m_A 102 TLFE 105 (144)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.48 E-value=12 Score=32.83 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
.|.++..-|.+.+++++|.+++...
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556666677777777777775543
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.76 E-value=5.2 Score=27.85 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=41.9
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++...| .|....|.
T Consensus 50 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67888888888888888888888877654 45677777777777777766 45444443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.01 E-value=16 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHh
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
|.++..-|.+.+++++|.+++-.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH
Confidence 44555566667777777776544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.01 E-value=5.5 Score=27.79 Aligned_cols=57 Identities=26% Similarity=0.244 Sum_probs=38.8
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++...| .|....|.
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67788888888888888888888876654 34566677776666666655 44444443
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.78 E-value=17 Score=36.62 Aligned_cols=130 Identities=9% Similarity=-0.057 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCC-hhhHHHHHHhhccCCh--hh--HHHHHHHHHcCCC-hHHHHHHHHhcccc--------CCChhhHHH
Q 046354 62 SAMIDGYVKAGR-VDEARKVFDEIYEGNV--YS--WTSLISGYFKARQ-VDEGRRLFDRMPLK--------LKNVVSWTT 127 (510)
Q Consensus 62 ~~li~~~~~~~~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~--------~~~~~~~~~ 127 (510)
..|+..+...++ ++.|..+|+++.+.+. .+ ...++..+.+.++ --+|.+++.+..+. .+.......
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455565555666 5778999998855333 22 2233333333332 23455555444321 111100000
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 128 ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
+.. ........-++.+...|+++.|+++-++.. +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~----------~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMN----------CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccC----------cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000 011223334566778899999999988877 4457789999999999999999999999886
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.44 E-value=2.9 Score=38.46 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH----hhCCCCCcchhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR----AYGFKPRAEHYS 383 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 383 (510)
+...++..+...|++++|...+..+... -+-+...+..++.++...|+..+|++.|+.+.+ +.|+.|++.+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455677888899999999999998876 366778999999999999999999999988755 348888877643
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.08 E-value=12 Score=30.18 Aligned_cols=154 Identities=8% Similarity=0.084 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhc
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~ 135 (510)
++...-...+.++.+.+..+....+.+.+..++.......+..+.+.|+.+....+.+.+.. ++...-...+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~----- 98 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKD--EDGWVRQSAAV----- 98 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHHH-----
Confidence 67777777777788888766666666666667777777777777777766555444444443 45443333333
Q ss_pred CCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 046354 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215 (510)
Q Consensus 136 ~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (510)
++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+...+..++..+-...+.++
T Consensus 99 ----------------aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 99 ----------------ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162 (201)
T ss_dssp ----------------HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----------------HHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3334444433444444444677777777788888888765555555555667777777777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 046354 216 ARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~ 233 (510)
.+.|. .++...+..+.+
T Consensus 163 ~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 163 GEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 77765 345555555554
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.62 E-value=36 Score=35.17 Aligned_cols=148 Identities=12% Similarity=-0.034 Sum_probs=85.7
Q ss_pred ccccChhhHHHHhcccCC-CChhh--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH---HHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA-KDVVS--WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV---GVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~ 361 (510)
.-.|+.+....++..+.+ .+... .-.+.-++...|+.+.+..+++.+... ..|.. -|. .+.-+|+..|+...
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHH
Confidence 555666666666654432 22222 233334455779999999998888763 12222 232 34457889999888
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDV-RMADYIGERLI 439 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 439 (510)
..+++..+... ...+..-...+.-++...|+.+.+.++++.+... .|....--.+.-+....|+. .++..++..+.
T Consensus 579 Iq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 88898888763 2233333334444555567777777777755532 44444333333444444443 66777887775
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.28 E-value=2 Score=36.58 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
...+.|.+++|++....-.+..| |...-..|+.-++-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566777777766665554555 55566666677777777777777777777777765
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.23 E-value=9.5 Score=26.60 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046354 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 244 (510)
+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+..+..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345778899999999999988899999987764 57888888888887776665 34444443
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.76 E-value=29 Score=31.78 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhhH--
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMPN--------KDIVAWNAMITAYVDAGN-MAQASELFNLMPQ---RNVWTW-- 208 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~-- 208 (510)
......+...|.+.|+.++..+++....+ ........++..+....+ .+.-.++..+..+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999888761 123345667777766433 3333444433332 111223
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 209 ----NAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 209 ----~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
.-++..|...|++.+|.+++.++.+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 25788999999999999999988764
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.29 E-value=3 Score=31.01 Aligned_cols=61 Identities=10% Similarity=0.222 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
-+..+-++.+....+-|++......+++|.+.+|+..|.++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345566666667778888888888888888888898898888888775 3344556766654
No 270
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.86 E-value=12 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....+....|-.+
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 78999999999999999999999999998885554444444433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.33 E-value=12 Score=30.22 Aligned_cols=27 Identities=11% Similarity=-0.214 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
.|......+...|++.+|..+|+..++
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444555555555554443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.02 E-value=15 Score=25.67 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=52.9
Q ss_pred CChhhHHHHHHhccccCCChhHHH-HHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 39 HDLPKAEALFRAMPESQRNIVAES-AMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 39 ~~~~~A~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
...++|..+-+.+... ++.+.-+ .-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++..
T Consensus 21 H~HqEA~tIAdwL~~~-~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GEEEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 3556777777766654 3322222 23456778899999999999998899998888754 456777777777766655
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.70 E-value=8.5 Score=35.92 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=27.2
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCC----CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPH----ERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...+++.|.+.|++++|.+.+.++... ..-...+-..+..+...+|+..+...++++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555555444321 1122344444444555555555555555554
No 274
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=76.29 E-value=36 Score=29.11 Aligned_cols=177 Identities=7% Similarity=-0.073 Sum_probs=83.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChh----hHHHHHHh--hccCChhhHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD----EARKVFDE--IYEGNVYSWTSL 95 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~----~A~~~~~~--~~~~~~~~~~~l 95 (510)
.+|...-...+.++.+.|.. .+...+..+.. .++...-...+.++.+.|... ....++.. ..+++..+....
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a 111 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQ-DAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATA 111 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCc-hHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 46665555666677776654 34444444333 256655556666777766432 22233332 234666666666
Q ss_pred HHHHHcCCC-----hHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC
Q 046354 96 ISGYFKARQ-----VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170 (510)
Q Consensus 96 i~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 170 (510)
+.++.+.+. ...+...+..+... ++...-...+.++...+. .+....+.+.+.
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~d-~~~~vR~~a~~aL~~~~~---------------------~~~~~~L~~~l~ 169 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAFD-KSTNVRRATAFAISVIND---------------------KATIPLLINLLK 169 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTTC-SCHHHHHHHHHHHHTC------------------------CCHHHHHHHHT
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhhC-CCHHHHHHHHHHHHhcCC---------------------HHHHHHHHHHHc
Confidence 666655441 23343443333221 454444444444444333 211122222222
Q ss_pred CCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChH
Q 046354 171 NKDIVAWNAMITAYVDAG--NMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (510)
.++..+-...+.++.+.| ...-...+...+..++..+-...+.++.+.|+..
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~ 223 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh
Confidence 455554444455555444 2222233334444466655556666666666543
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.43 E-value=53 Score=28.84 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=37.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCC----------------C---CCCc-HHHH-HHHHHHHHhhCCHHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMP----------------P---HERD-HVVL-GALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~---~~p~-~~~~-~~l~~~~~~~~~~~~A~~~~~ 436 (510)
++.....+...|.+.|++.+|...|-... + ..|. ...| ...+--|...|+...|..+++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 67777888888888888888887663221 0 1111 1111 111223455678888888888
Q ss_pred HHH
Q 046354 437 RLI 439 (510)
Q Consensus 437 ~~~ 439 (510)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.05 E-value=63 Score=29.54 Aligned_cols=158 Identities=10% Similarity=0.006 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccC---C---ChhHHHHHHHHHHhc-CChhhHHHHHHhhcc---CChhhH---
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQ---R---NIVAESAMIDGYVKA-GRVDEARKVFDEIYE---GNVYSW--- 92 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~---~~~~~~--- 92 (510)
.+...|...|.+.|+.++..+++...+.-- | .......|+..+... +..+.-.++..+.++ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999998876541 2 334556777777654 344444444444432 222233
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHh
Q 046354 93 ---TSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167 (510)
Q Consensus 93 ---~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~ 167 (510)
.-|+..|...|++.+|..++.++.+. ..|.. ..+ ..++..-++.|...++...+...+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~--~~l--------------lev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDK--NLL--------------VEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT--HHH--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hhH--------------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 25789999999999999999988875 22322 122 2334445666777777777777665
Q ss_pred hCC------CCChhHHHH----HHHHHH-hcCCHHHHHHHHhh
Q 046354 168 QMP------NKDIVAWNA----MITAYV-DAGNMAQASELFNL 199 (510)
Q Consensus 168 ~~~------~~~~~~~~~----li~~~~-~~g~~~~A~~~~~~ 199 (510)
... .+++.+... -...+. ..+++..|...|-+
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 543 133322211 122345 66777777666544
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.97 E-value=14 Score=34.43 Aligned_cols=56 Identities=7% Similarity=-0.128 Sum_probs=27.8
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC------CChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA------KDVVSWTAMILAYSNHGHGFQVFRLFARML 335 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 335 (510)
...+...| .+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+++..
T Consensus 134 ~~~la~~~-----~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYY-----AQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHH-----HHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555 555555555555555443 112234444555555555555555555543
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.23 E-value=24 Score=27.09 Aligned_cols=40 Identities=25% Similarity=0.159 Sum_probs=19.5
Q ss_pred HHHHHHHHH--hcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 431 ADYIGERLI--ELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 431 A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+..+|+.+. +.....+..|...+..+...|++++|.++|+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444454444 2223333335555555555555555555555
No 279
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.05 E-value=32 Score=25.71 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 408 HERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 408 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
.-|++.+....+.+|.+.+|+..|+++++-++....+....|-.+
T Consensus 84 lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 84 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 379999999999999999999999999999985544444444443
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.92 E-value=79 Score=29.11 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=36.7
Q ss_pred HHHhcCChhhHHHHHHhccccC-CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChh--hHHHHHHHHHcCCChHHHHH
Q 046354 34 VFLRNHDLPKAEALFRAMPESQ-RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVY--SWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 110 (510)
..+..|+.+-+..+++.-.... .+.. ..+.+...+..|+.+-+.-+++.-...+.. .-.+.+...++.|+.+-+.-
T Consensus 20 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 98 (437)
T 1n11_A 20 VASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCSSSC-CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 3446677666666655432210 1111 122344445667766666666554332211 11122334445566655555
Q ss_pred HHHh
Q 046354 111 LFDR 114 (510)
Q Consensus 111 ~~~~ 114 (510)
+++.
T Consensus 99 Ll~~ 102 (437)
T 1n11_A 99 LLEN 102 (437)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 5544
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.21 E-value=58 Score=30.92 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhhccCCh-------hhHH-HHHHHHHcCCChHHHHHHHHhcccc
Q 046354 58 IVAESAMIDGYVKAGRVDEARKVFDEIYEGNV-------YSWT-SLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 58 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
...+|.+++.|...+.++.|..+..+..-|.. ..|. .+.+.+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788889999999999999999998854422 1222 2456677789999999999887765
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.00 E-value=35 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
...|......+...|++.+|..+|+..++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445555555556666666666666666443
No 283
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.62 E-value=69 Score=27.26 Aligned_cols=48 Identities=10% Similarity=-0.082 Sum_probs=26.3
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCC
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKAR 103 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 103 (510)
++...-...+.++.+.+..+....+.+.+..++.......+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 555555555666666665444344444444456655555666665555
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.25 E-value=93 Score=27.95 Aligned_cols=211 Identities=10% Similarity=0.158 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCC--hhhHHHHHHhhccCChhhHHHHHHHHHcCCCh
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQV 105 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 105 (510)
...+|.-|...++.++|...++++..-.........++......++ -+.+-.++..+. .+..+-..+..++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~----- 130 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFD----- 130 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHH-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHH-----
Confidence 4566777888888888888888876521123334444444333332 234445555555 35555555555443
Q ss_pred HHHHHHHHhcccc---CCChhhHHHHHHHH-HhcCCcchh----------hHHHHHHH--HHHHHh-cCchHHHHHHHhh
Q 046354 106 DEGRRLFDRMPLK---LKNVVSWTTVVLGC-AHNGLIAKL----------EVISWTTM--CTGLER-NAMTKLAREYFVQ 168 (510)
Q Consensus 106 ~~A~~~~~~m~~~---~~~~~~~~~ll~~~-~~~~~~~~a----------~~~~~~~l--~~~~~~-~~~~~~a~~~~~~ 168 (510)
.+++.+.+. .|+...+...+-+- ...+-+... .......+ +..+.+ ....+...++|..
T Consensus 131 ----~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~ 206 (358)
T 3eiq_C 131 ----KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGS 206 (358)
T ss_dssp ----HHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCC
T ss_pred ----HHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCC
Confidence 222222222 46655544433332 112211111 00000000 111111 1111111111111
Q ss_pred CC--CCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 046354 169 MP--NKD---IVAWNAMITAYVDAGNMAQASELFNLMPQRN---VWTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMP 238 (510)
Q Consensus 169 ~~--~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p 238 (510)
.. .|. ......++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+...+++..+...|+-+
T Consensus 207 g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 207 GGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 11 111 1235778888999999999999999998764 2345555556665443 456788898898888766
Q ss_pred CHhhHHHHHH
Q 046354 239 NETTCTSILT 248 (510)
Q Consensus 239 ~~~~~~~ll~ 248 (510)
.......+..
T Consensus 287 ~~q~~~Gf~~ 296 (358)
T 3eiq_C 287 IDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 285
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=57.74 E-value=27 Score=25.75 Aligned_cols=91 Identities=4% Similarity=-0.130 Sum_probs=50.3
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHc
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK 101 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 101 (510)
.++...-...+.++.+.|+.. . ..+..+.. +++...-...+.++.+.++.+....+.+.+..++..+....+.++.+
T Consensus 23 ~~~~~vR~~A~~~L~~~~~~~-~-~~L~~~L~-d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 23 DENKWVRRDVSTALSRMGDEA-F-EPLLESLS-NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp SSCCCSSSSCCSSTTSCSSTT-H-HHHHHGGG-CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCchH-H-HHHHHHHc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344333333334444555442 3 33334433 36776666777777777775544444444556777777777888887
Q ss_pred CCChHHHHHHHHhc
Q 046354 102 ARQVDEGRRLFDRM 115 (510)
Q Consensus 102 ~g~~~~A~~~~~~m 115 (510)
.|+.+....+.+.+
T Consensus 100 ~~~~~a~~~L~~~l 113 (131)
T 1te4_A 100 IGGERVRAAMEKLA 113 (131)
T ss_dssp HCSHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHH
Confidence 77654333333333
No 286
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.46 E-value=86 Score=27.91 Aligned_cols=71 Identities=8% Similarity=0.204 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCC--hhHHHHHHHHHHhcC--ChhhHHHHHHhhccCChhhHHHHHHHHH
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRN--IVAESAMIDGYVKAG--RVDEARKVFDEIYEGNVYSWTSLISGYF 100 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~~ 100 (510)
...++.-|...|+.++|.+.++++.. |. ...-..++......+ ..+.+.+++..+.+.+..+-..+..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~--p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS--PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC--GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC--cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45678888899999999999999875 42 112222232222222 2345556666667677777777776664
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.98 E-value=76 Score=25.63 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=23.0
Q ss_pred hhhHHHHHHhhccCC-----hhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 74 VDEARKVFDEIYEGN-----VYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 74 ~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
..++.++|..|.... ..-|......+...|++.+|.++|+.-.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555553322 22355555555555666666666655555
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.32 E-value=90 Score=26.26 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=30.0
Q ss_pred HHHHHHhcCchHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 149 MCTGLERNAMTKLAREYFVQMPNKDIV---AWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
.+....+.|+.+.+..+++....++.. .-.+.+...+..|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 344455677777777777765533211 11234445566777777666666533
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.39 E-value=56 Score=24.18 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCC---hhHHHHHHHHHHhcCC--hhhHHHHHHhhccCChhhHHHHHHHHH
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRN---IVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYF 100 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~li~~~~ 100 (510)
...++.-|...|+.++|.+.++++.. |. ..+...+..++-+.++ .+.+.+++..+.+.+..+-..+..++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 45677778888888888888888764 31 1222233333333322 345666666666666666666666553
No 290
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=54.05 E-value=62 Score=23.67 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=55.7
Q ss_pred cccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 3 QFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
++++.|+.. ...+.+.+..++...-...+.++.+.|+.. +...+..+.. +++..+-...+.++.+.|+.+....+.+
T Consensus 35 ~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~-a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~~~a~~~L~~ 111 (131)
T 1te4_A 35 ALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDER-AVEPLIKLLE-DDSGFVRSGAARSLEQIGGERVRAAMEK 111 (131)
T ss_dssp STTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-HHHHHHHHHH-HCCTHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 455556543 345555555788888788888888888754 4444444433 2677777777888888886544333444
Q ss_pred hhccCChhhHHHHHHH
Q 046354 83 EIYEGNVYSWTSLISG 98 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~ 98 (510)
.+..+|..+....+.+
T Consensus 112 ~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 112 LAETGTGFARKVAVNY 127 (131)
T ss_dssp HTTSCCTHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHH
Confidence 4444555444444433
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.70 E-value=1.3e+02 Score=31.53 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 64 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
++..|...|.++-|.++...+.. +...--.+..+|...|++++|...|++.-..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g 869 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 869 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence 66777778888877765555444 4433345778889999999999999988654
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.58 E-value=69 Score=26.39 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
...|......+...|++.+|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3455555555566666666666666666443
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.47 E-value=46 Score=26.66 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.2
Q ss_pred HHHhcCChhhHHHHHHhccc
Q 046354 34 VFLRNHDLPKAEALFRAMPE 53 (510)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~~~ 53 (510)
.|.+.|.+++|.++|++...
T Consensus 126 VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHccchHHHHHHHHHHhc
Confidence 34445555555555554333
No 294
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.18 E-value=90 Score=25.03 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=38.9
Q ss_pred hHHHHHHHhhCCCCCCcHH-HH-----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 395 VKEAMRVVSKMPPHERDHV-VL-----GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~-~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
++.|+.+++.+....+... .- ...+..|.+.|.+++|.+++++..+..|.+...-..|..+-.+...+..-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 4667777777765433211 11 223455888888888988888877666555444455555544444444333
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.90 E-value=45 Score=29.98 Aligned_cols=62 Identities=6% Similarity=0.057 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC--cHHHHHHHHHHHHHh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG--LVEKGRKTFNLMSRA 372 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 372 (510)
..+.++.=|...|+.++|...++++....+. .......+..++-+.+ ..+...+++..+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 3567788888999999999999888521111 1223344444555433 345567777777665
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.57 E-value=45 Score=27.12 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCc-ch-----hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRA-EH-----YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (510)
.+.|+.+|+.+.+...+..+. .. -...+-.|.+.|.+++|.+++++.....|+..-...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~ 152 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRN 152 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHH
Confidence 567788888887762111111 00 113455678899999999999988755554443333
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.35 E-value=86 Score=23.12 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQRNV---WTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45677788888899999888888876532 334455555555532 4567788888877776554444
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.30 E-value=77 Score=24.25 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQRNV---WTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45677778888888888888888876532 334445555555332 4567778888877775554444
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.58 E-value=1.5e+02 Score=24.80 Aligned_cols=185 Identities=10% Similarity=0.044 Sum_probs=86.7
Q ss_pred HHHHHHhcCChhhHHHHHHhccccC-CChhHHHHHHHHHHhcCChhhHHHHHHhhccCCh---hhHHHHHHHHHcCCChH
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQ-RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV---YSWTSLISGYFKARQVD 106 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~ 106 (510)
.+...++.|+.+....+++.-.... .+...-.+.+...+..|+.+-+.-+++.-..++. .-. +.+...+..|+.+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~ 86 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAIAGSVK 86 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCCHH
Confidence 3444556777766666665433210 1011112345555666777766666665433322 112 2233344556666
Q ss_pred HHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChh----------
Q 046354 107 EGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV---------- 175 (510)
Q Consensus 107 ~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 175 (510)
-+..+++.-... .++...++.+ ......|+.+.+..+++....++..
T Consensus 87 ~v~~Ll~~g~~~~~~~~~g~t~L----------------------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~ 144 (285)
T 1wdy_A 87 LLKLFLSKGADVNECDFYGFTAF----------------------MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144 (285)
T ss_dssp HHHHHHHTTCCTTCBCTTCCBHH----------------------HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHT
T ss_pred HHHHHHHcCCCCCccCcccCCHH----------------------HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhh
Confidence 555555542221 1111111111 2223445556565565554422211
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHhhCC-C---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046354 176 --AWNAMITAYVDAGNMAQASELFNLMP-Q---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239 (510)
Q Consensus 176 --~~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 239 (510)
.-.+.+...+..|+.+-+..+++... . .+....+.+..+ +..++.....++++.+.+.|..++
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 01123444556778777777776522 1 233333333333 345555555666666777665554
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.13 E-value=81 Score=29.91 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=37.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
|.....-...+..|...|.++..+.|++..+|..|+-+....|+.-+|.-+|-+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 333344445667788888888888888888888888877777776666555443
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.45 E-value=1.8e+02 Score=25.41 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhhH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQRNV---WTWNAMIDRYARNGP--EGAAMKLLNLMFQSRFMPNETTC 243 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~ 243 (510)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+.+++..+...|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45678889999999999999999987632 334455555555433 45677888888877765554443
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.13 E-value=97 Score=25.82 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcccc---CC-----ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-CChhhHHHHHHHH
Q 046354 29 ASMITVFLRNHDLPKAEALFRAMPES---QR-----NIVAESAMIDGYVKAGRVDEARKVFDEIYE-GNVYSWTSLISGY 99 (510)
Q Consensus 29 ~~li~~~~~~~~~~~A~~~~~~~~~~---~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~ 99 (510)
---++.+....++++|..++++..+. .+ +.......+..-.....-.-+..+.+.+.. .+...-...+..+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34577889999999999999987654 11 112223334444444444455555555522 2334455667888
Q ss_pred HcCCChHHHHHHHHhccc
Q 046354 100 FKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~ 117 (510)
.+.|+.++|.++|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 899999999999977654
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.51 E-value=1.6e+02 Score=24.31 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC
Q 046354 325 FQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (510)
+.+..+|..|...|+--... -|......+...|++.+|..+|+...+. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 56778888888887665544 4555666667788888888888888776 65653
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.87 E-value=2.1e+02 Score=25.14 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc---CC
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA---GQ 394 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 394 (510)
+...|++++|+..|+..... ..+.......+.+++.+++....+- +...-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Confidence 45689999999999987653 1111122233444444444333221 001111111111 23
Q ss_pred hHHHHHHHhhC--CCCCCcHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 395 VKEAMRVVSKM--PPHERDHV--VLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 395 ~~~A~~~~~~~--~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
..+..++-.-+ .+.+|... +...-+....+.+++..|..+.++++++.|..
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 33334333222 22455433 66777888899999999999999999999864
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.58 E-value=2.5e+02 Score=29.27 Aligned_cols=46 Identities=7% Similarity=-0.259 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCCch----hHHHHHHHHHHc
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIEL-QPSSSG----AYVLSANVHAAR 459 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 459 (510)
-|..++.-+.+.+-++-+.++.+.+++. .++++. .+..+..+.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 5566667777788888888888888853 344433 244444444443
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.27 E-value=1.5e+02 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHh
Q 046354 185 VDAGNMAQASELFN 198 (510)
Q Consensus 185 ~~~g~~~~A~~~~~ 198 (510)
++.|+.+....+++
T Consensus 17 ~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 17 TQYGIYERCRELVE 30 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCChHHHHHHHH
Confidence 34444444444443
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.95 E-value=1.4e+02 Score=22.83 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=44.7
Q ss_pred hhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCCh-----hhHHHHHHHHHcCCChHHHHHHHHhcc
Q 046354 42 PKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV-----YSWTSLISGYFKARQVDEGRRLFDRMP 116 (510)
Q Consensus 42 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~ 116 (510)
+.+...|..-..-.-|+.-...-+...-. .+++.++|..|....+ .-|......+...|++.+|.++|+.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445554444434454443333332222 2447788888866443 347777777888888888888888877
Q ss_pred cc
Q 046354 117 LK 118 (510)
Q Consensus 117 ~~ 118 (510)
+.
T Consensus 129 ~~ 130 (152)
T 4a1g_A 129 QN 130 (152)
T ss_dssp HT
T ss_pred Hc
Confidence 74
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.44 E-value=1.8e+02 Score=25.72 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=47.4
Q ss_pred HHhcCchHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hhHHHHHHHHHhcCChHHHHHHH
Q 046354 153 LERNAMTKLAREYFVQMPNKDI---VAWNAMITAYVDAGNMAQASELFNLMPQRNV-WTWNAMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~ 228 (510)
.+..|+.+.+..+++....++. .-.+ .+...+..|+.+-+..+++.-...+. ..++. +...+..|+.+-+..++
T Consensus 27 Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll 104 (364)
T 3ljn_A 27 AARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALV 104 (364)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHH
Confidence 3456777777777776543222 2222 34445667888777777776554332 22223 33344667777666666
Q ss_pred HHHHHCCCCCC
Q 046354 229 NLMFQSRFMPN 239 (510)
Q Consensus 229 ~~m~~~g~~p~ 239 (510)
+.....|..|+
T Consensus 105 ~~~~~~~~~~~ 115 (364)
T 3ljn_A 105 EGAKERGQMPE 115 (364)
T ss_dssp HHHHHHTCCHH
T ss_pred HhccccCCCHH
Confidence 65444454443
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.87 E-value=70 Score=26.71 Aligned_cols=86 Identities=8% Similarity=-0.026 Sum_probs=51.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc--CCCC----CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKS--GTKP----DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .+++......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHHH
Confidence 367788889999999998877652 3332 11222223333333223333444444442 2 445555667778
Q ss_pred HHhhcCChHHHHHHHh
Q 046354 388 ILRRAGQVKEAMRVVS 403 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~ 403 (510)
.+.+.|+-++|.++|=
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 8899999999998873
No 310
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.23 E-value=2.1e+02 Score=24.26 Aligned_cols=163 Identities=9% Similarity=-0.041 Sum_probs=80.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC-cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS-HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
++...-+.+++++.....+.+.+.|...+..--+.|--+|- ..|....+++++..+.++-....+. -...++.-|.+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~-~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH-HHHHHHHHHHHH
Confidence 45556778999999999988888776666544444443432 1233345556655554331111221 112233333210
Q ss_pred ------CChHHHHHHHhhCC--C-CCCcHHHHHH-HHHHHHh------hC-----CHHHHHHHHHHHH-----hcCCCCc
Q 046354 393 ------GQVKEAMRVVSKMP--P-HERDHVVLGA-LLGACRL------HG-----DVRMADYIGERLI-----ELQPSSS 446 (510)
Q Consensus 393 ------g~~~~A~~~~~~~~--~-~~p~~~~~~~-l~~~~~~------~~-----~~~~A~~~~~~~~-----~~~p~~~ 446 (510)
.--.+.+.+++... . ..+....|-. +-.-|.+ .| -.+.|.+.|+.+. ++.|.+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 00123344444331 0 1222222222 2111111 11 2355667777665 5777776
Q ss_pred hhHHHHHHH----HHHcCCChHHHHHHHHHH-Hhhc
Q 046354 447 GAYVLSANV----HAARGEWDEFAQVRKKME-RRVK 477 (510)
Q Consensus 447 ~~~~~l~~~----~~~~g~~~~A~~~~~~~~-~~~~ 477 (510)
.......+. |.-.++.++|.++-+... ..+.
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 553333332 455899999998877766 4443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.98 E-value=1.5e+02 Score=22.62 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCC---hhHHHHHHHHHHhcCC--hhhHHHHHHhhccCChhhHHHHHHHHH
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRN---IVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYF 100 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~li~~~~ 100 (510)
...++.-|...|+.++|.+.++++.. |. ..+...+..++-+.++ .+.+.+++..+.+.+..+-..+..++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~ 87 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 46678888889999999999998865 42 2223333333333222 445667777777777777777766653
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.33 E-value=1.7e+02 Score=23.73 Aligned_cols=144 Identities=6% Similarity=-0.066 Sum_probs=71.5
Q ss_pred ccccChhhHHHHhcccC----C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH--HHHHHhcCcCCc
Q 046354 288 GFQLDVNSARLAFERLE----A---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF--VGVLSDCSHAGL 358 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~ 358 (510)
+..|+.+....+++.+. . .+..-++.+ ...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 67788887777776321 1 233333333 3444556653 45555566766654321 223334445667
Q ss_pred HHHHHHHHHHHHHhhCCCCCcc--hhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAE--HYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
.+-...+++..... +..++.. .-...+...++.|+.+-+..+++.-... ..+...-.+.+......|+.+-+..++
T Consensus 92 ~~~~~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 92 PTCLRALLDSAAPG-TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp HHHHHHHHHHSCTT-SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 66555555443211 1122211 1123344455678888887777765532 112111122334445667776665555
Q ss_pred HH
Q 046354 436 ER 437 (510)
Q Consensus 436 ~~ 437 (510)
+.
T Consensus 171 ~~ 172 (241)
T 1k1a_A 171 QH 172 (241)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.93 E-value=1.9e+02 Score=24.51 Aligned_cols=20 Identities=10% Similarity=-0.107 Sum_probs=9.4
Q ss_pred HhHHhhcCChHHHHHHHhhC
Q 046354 386 ADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~ 405 (510)
+...+..|+.+-+..+++..
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 33334455555555444443
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.03 E-value=78 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHhcCChhhHHHHHHhccccCCChh
Q 046354 33 TVFLRNHDLPKAEALFRAMPESQRNIV 59 (510)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 59 (510)
-.|.+.|.+++|.++|++.....|+..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 345666666666666666665544444
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.08 E-value=72 Score=22.09 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=22.2
Q ss_pred ChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHH
Q 046354 73 RVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEG 108 (510)
Q Consensus 73 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 108 (510)
+.+.|.++++.+++.+..+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554443
No 316
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=31.56 E-value=2.3e+02 Score=23.75 Aligned_cols=159 Identities=7% Similarity=-0.029 Sum_probs=78.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC-cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS-HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
++...-+.+++++.....+.+.+.|...+..--+.|--+|- ..|....+++++..+.+......+. -...++.-|...
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~-~~~~~i~~yr~k 88 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNE-KKIEMVRAYREK 88 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-C-HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHH
Confidence 34556678899998888888888776666544444444442 1233445566665555431111111 111233333110
Q ss_pred ------CChHHHHHHHhhCC---CCCC--cHHHH-HHHHHHHHh-----------hCCHHHHHHHHHHHH-----hcCCC
Q 046354 393 ------GQVKEAMRVVSKMP---PHER--DHVVL-GALLGACRL-----------HGDVRMADYIGERLI-----ELQPS 444 (510)
Q Consensus 393 ------g~~~~A~~~~~~~~---~~~p--~~~~~-~~l~~~~~~-----------~~~~~~A~~~~~~~~-----~~~p~ 444 (510)
.--.+.+.+++... ...+ ....| ..+-.-|.+ ..-.+.|...|+.+. ++.|.
T Consensus 89 ie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pt 168 (248)
T 3uzd_A 89 IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPT 168 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 00123334443332 0123 22222 222111211 122356666777664 57777
Q ss_pred CchhHHHHHHH----HHHcCCChHHHHHHHHHH
Q 046354 445 SSGAYVLSANV----HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~ 473 (510)
+|.......+. |.-.++.++|.++-+...
T Consensus 169 hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 169 HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76553333322 555899999988877665
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.61 E-value=66 Score=30.53 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=37.5
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc------hh-HhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE------HY-SCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
..++.+++.|...+.++.|..+..+.. ++.+.. .| -.+...+.-.+++.+|.+.+.......|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 346666777777777888877777653 222211 11 2234555667777777777776554444
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.38 E-value=66 Score=22.28 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 188 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
.+.++|.++++.++...+..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46777888888877777777888888776666655443
No 319
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.20 E-value=2.2e+02 Score=22.39 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 184 YVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 184 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
+.-.|.+.+++-++......+..-|-.| +|-+.+++..|+..++.+....+.
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4567888888888876654333334333 467789999999999999865543
No 320
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.86 E-value=5.4e+02 Score=26.80 Aligned_cols=182 Identities=8% Similarity=-0.012 Sum_probs=85.3
Q ss_pred ccccChhhHHHHhcccCCC----Ch--hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--C-----CCch--hHHHHHHh
Q 046354 288 GFQLDVNSARLAFERLEAK----DV--VSWTAMILAYSNHGHGFQVFRLFARMLKSGT--K-----PDEI--TFVGVLSD 352 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~--~~~~li~~ 352 (510)
...|+.+++...+...... +. ..=..+.-+....|...++..++.......- . +... ....|.-+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4567777788888776641 11 1222333445555655667777766554321 0 1011 11122233
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhH--hHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHH--HHHhhCCH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS--CLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG--ACRLHGDV 428 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~ 428 (510)
+.-.++. ++...+..+... . .+...... +|...+.-.|+-+....++..+.+... ......+.. ++...|+.
T Consensus 465 ~~GS~~e-ev~e~L~~~L~d-d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~-e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANI-EVYEALKEVLYN-D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQH-GNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCH-HHHHHHHHHHHT-C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCH-HHHHHHHHHHhc-C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHhhhCCCh
Confidence 3444443 344444444432 1 11111111 233344556666666666665442222 223333333 34456777
Q ss_pred HHHHHHHHHHHhcCCCCchh--HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 429 RMADYIGERLIELQPSSSGA--YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.+..+.+.+.......... -..++-+|+..|+.....+++..+.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 77777777665422111111 2234455666777655555666555
No 321
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.40 E-value=2.4e+02 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046354 212 IDRYARNGPEGAAMKLLNLMFQSRFMPN 239 (510)
Q Consensus 212 i~~~~~~~~~~~A~~~~~~m~~~g~~p~ 239 (510)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344567888888777777766665554
No 322
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=27.31 E-value=2.7e+02 Score=23.13 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-----hcCCCCchhHHHHHH----HHHHcCCChHHHHHHHHHH-Hhhccc
Q 046354 428 VRMADYIGERLI-----ELQPSSSGAYVLSAN----VHAARGEWDEFAQVRKKME-RRVKKV 479 (510)
Q Consensus 428 ~~~A~~~~~~~~-----~~~p~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~-~~~~~~ 479 (510)
.+.|...|+.+. ++.|.+|.......+ .|.-.|+.++|.++-+... ..+...
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~el 207 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAEL 207 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 345666677665 467777654333222 2455899999988877766 444433
No 323
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.90 E-value=2.5e+02 Score=22.57 Aligned_cols=204 Identities=10% Similarity=-0.045 Sum_probs=94.5
Q ss_pred cCCCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhhHHHHHHhccccC-CChhHHHHHHHHHHhcCChhhHHHH
Q 046354 5 GCTGKVKEATKLFDEMSQP---DPVSCASMITVFLRNHDLPKAEALFRAMPESQ-RNIVAESAMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~ 80 (510)
++.|+++....+++.-..+ +..-. +.+...++.|+.+-+.-+++.-.... .+...-.+.+...+..|+.+-+..+
T Consensus 17 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred HHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence 4567777777777654322 22222 23445567777766666655443321 1111112344555666777776666
Q ss_pred HHhhccCCh---hhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhc
Q 046354 81 FDEIYEGNV---YSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERN 156 (510)
Q Consensus 81 ~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~ 156 (510)
++.-..++. ..++ .+...+..|+.+-+..+++.-... ..+....+.+..+... .
T Consensus 96 l~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~---------------------~ 153 (240)
T 3eu9_A 96 MKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR---------------------T 153 (240)
T ss_dssp HHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---------------------C
T ss_pred HHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh---------------------C
Confidence 665433322 2222 334455667776666665543221 1222222222222211 1
Q ss_pred CchHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 046354 157 AMTKLAREYFVQMPNKD---IVAWNAMITAYVDAGNMAQASELFNLMPQR---NVWTWNAMIDRYARNGPEGAAMKLLNL 230 (510)
Q Consensus 157 ~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~ 230 (510)
+..+...-+.+....++ ...-.+.+...+..|+.+-+..+++.-..+ +....+ .+....+.|+.+-+.-+++.
T Consensus 154 ~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp CSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHh
Confidence 11222222333222221 111123445556778888777777764432 222222 23444567777666555554
Q ss_pred HH
Q 046354 231 MF 232 (510)
Q Consensus 231 m~ 232 (510)
..
T Consensus 233 ~~ 234 (240)
T 3eu9_A 233 RQ 234 (240)
T ss_dssp C-
T ss_pred hh
Confidence 43
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.56 E-value=2.3e+02 Score=22.07 Aligned_cols=180 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHH
Q 046354 150 CTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 150 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A 224 (510)
+...+..|+.+.+..++.... ......-.+.+...+..|+.+-+..+++.-.. .....-...+...+..|+.+-+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 88 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL 88 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhccc-
Q 046354 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL- 303 (510)
Q Consensus 225 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~- 303 (510)
..+++.-...--.++..-.+.+..+ +..|+.+-+..+++.-
T Consensus 89 ~~Ll~~~~~~~~~~~~~g~t~L~~A--------------------------------------~~~~~~~~v~~Ll~~g~ 130 (201)
T 3hra_A 89 AYMLKHATPDLNKHNRYGGNALIPA--------------------------------------AEKGHIDNVKLLLEDGR 130 (201)
T ss_dssp HHHHHHSCCCTTCCCTTSCCSHHHH--------------------------------------HHTTCHHHHHHHHHHCC
T ss_pred HHHHhccCcccccccCCCCcHHHHH--------------------------------------HHcCCHHHHHHHHHcCC
Q ss_pred CC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH--HHHHhcCcCCcHHHHHHHHH
Q 046354 304 EA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV--GVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 304 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~ 367 (510)
.. ++..-++.+..+.........-.++.+.+.+.|..|+..... +.+...+..|+.+-+.-+++
T Consensus 131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 325
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.45 E-value=3.3e+02 Score=24.08 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHhhccCC
Q 046354 62 SAMIDGYVKAGRVDEARKVFDEIYEGN 88 (510)
Q Consensus 62 ~~li~~~~~~~~~~~A~~~~~~~~~~~ 88 (510)
..++.-|...|+.++|.+.++++..|.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 457788888899999999999987664
No 326
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=26.26 E-value=3e+02 Score=23.30 Aligned_cols=159 Identities=8% Similarity=-0.058 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC--CCCCchhHHHHHHhcC-cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHh
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCS-HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (510)
++...-+.+++++....++++.+.+ ...+..--+.|-.+|- ..|....+++++..+.+....+.+. ....++..|.
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~-~~~~~i~~yr 92 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE-EHVNSIREYR 92 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcH-HHHHHHHHHH
Confidence 4555667789999999998888866 5555444444433332 1233345556665554431112221 1222333332
Q ss_pred hc------CChHHHHHHHhhCC--C-CCCcHHHHHHHHHH-HHh------h-----CCHHHHHHHHHHHH-----hcCCC
Q 046354 391 RA------GQVKEAMRVVSKMP--P-HERDHVVLGALLGA-CRL------H-----GDVRMADYIGERLI-----ELQPS 444 (510)
Q Consensus 391 ~~------g~~~~A~~~~~~~~--~-~~p~~~~~~~l~~~-~~~------~-----~~~~~A~~~~~~~~-----~~~p~ 444 (510)
.. .--++.+.+++... . ..+....|-.-+.+ |.+ . .-.+.|...|+.+. ++.|.
T Consensus 93 ~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt 172 (260)
T 1o9d_A 93 SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPT 172 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 00123333343332 0 12222222222111 211 1 22345666777665 46777
Q ss_pred CchhHHHHHH----HHHHcCCChHHHHHHHHHH
Q 046354 445 SSGAYVLSAN----VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 473 (510)
+|.......+ .|.-.|+.++|.++-+...
T Consensus 173 hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7654333322 2455899999888877665
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.68 E-value=1.8e+02 Score=21.43 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=10.9
Q ss_pred hHHhhcCChHHHHHHHhhCC
Q 046354 387 DILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~ 406 (510)
...+..|+.+-+.-+++.-.
T Consensus 73 ~~A~~~~~~~~v~~Ll~~g~ 92 (156)
T 1bd8_A 73 HDAARTGFLDTLKVLVEHGA 92 (156)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHHcCC
Confidence 33445566666666665443
No 328
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.64 E-value=3.4e+02 Score=23.78 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCcHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 408 HERDHV--VLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 408 ~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
++|.+. +...-+....+.+++..|..+.++++++.|+
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 456433 6677788889999999999999999999876
No 329
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.56 E-value=2.2e+02 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYA 216 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 216 (510)
+..++......|-+|+.+.-+.++.. .+......++..|.
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl 50 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFF 50 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 44555666667777766666666654 34555666666663
No 330
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.54 E-value=1.4e+02 Score=19.42 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCC-cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAG-LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
.|.+.|++++..-. .++..+...+ ..-.+.++++.+.+. +...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 35566766665443 3344444433 445566777777654 444455555555566655554
No 331
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.30 E-value=2.8e+02 Score=22.77 Aligned_cols=91 Identities=10% Similarity=0.000 Sum_probs=53.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchh-------HHHHHHhc--CcCCcHHHHHHHHHHHHHhh--------CCCC
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEIT-------FVGVLSDC--SHAGLVEKGRKTFNLMSRAY--------GFKP 377 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~--~~~g~~~~a~~~~~~~~~~~--------~~~~ 377 (510)
+...++.|+.+....+++.+.+.|..++... .+.|..+. ++.|+.+-+..+++...... .+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445567888888888888877776666433 23444433 25677777766666543310 0111
Q ss_pred -CcchhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 378 -RAEHYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 378 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
+..- .+.+...+..|+.+-+.-+++.-.
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCCC
Confidence 1122 233444556788888888887654
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.86 E-value=1.3e+02 Score=22.70 Aligned_cols=33 Identities=6% Similarity=-0.115 Sum_probs=15.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
++..+...+.+-.|.++++.+.+.+...+..|.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTV 59 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATV 59 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhH
Confidence 334444444445555555555554433333333
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.44 E-value=2.9e+02 Score=22.20 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=22.2
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCC-CcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHE-RDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+...++.|+.+-+.-+++.-.... .|..- .+.+......|+...+.++.+.+.
T Consensus 181 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566555555554433211 11111 112223334455555555555443
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.78 E-value=1.8e+02 Score=22.06 Aligned_cols=45 Identities=4% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 357 (510)
.++..+...+.+-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455555556666666666666554444444444444444333
No 335
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.33 E-value=4.4e+02 Score=23.88 Aligned_cols=111 Identities=9% Similarity=0.119 Sum_probs=63.2
Q ss_pred cCCCChHHHHHHHhhcCCCChhh--HHHHHHHHHhcCChhhHHHHHHhccccC-CChhHHHHHHHHHHhcCChhhHHHHH
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVS--CASMITVFLRNHDLPKAEALFRAMPESQ-RNIVAESAMIDGYVKAGRVDEARKVF 81 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~ 81 (510)
+..|+++-+..+++.-..|+... ..+.+...++.|+.+-+.-+++.-.... .+..- .+.+...+..|+.+-+.-++
T Consensus 22 a~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll 100 (437)
T 1n11_A 22 SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVKLLL 100 (437)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHHHHHHH
Confidence 45678888888887644443221 1233444567888877777776543321 11111 23455556778888777777
Q ss_pred HhhccCChhh--HHHHHHHHHcCCChHHHHHHHHhcc
Q 046354 82 DEIYEGNVYS--WTSLISGYFKARQVDEGRRLFDRMP 116 (510)
Q Consensus 82 ~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 116 (510)
+.-..++... -.+.+...++.|+.+-+..+++.-.
T Consensus 101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 7654433221 1123445566788887777776543
No 336
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.02 E-value=4.5e+02 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
....+...|...|+.+.|...++++.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555667777777777777765
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.78 E-value=1.3e+02 Score=22.15 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 358 (510)
.++..+...+.+-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666667778888888888887655666665555555555553
No 338
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.71 E-value=3.2e+02 Score=22.02 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.2
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcH-----HHHHHHHHHHHHhhCCCC
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLV-----EKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 377 (510)
.|..+++.|+-.+-+|++.| .|....=..++.+...-|.- ..|...++....- |.+-
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 45689999999999999999 77666666666666665543 2344445555444 6543
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.39 E-value=6.9e+02 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHH
Q 046354 209 NAMIDRYARNGPE---GAAMKLLNLMFQ 233 (510)
Q Consensus 209 ~~li~~~~~~~~~---~~A~~~~~~m~~ 233 (510)
..++...|..|.. +.|.+.|+....
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~ 717 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMS 717 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 3455556666653 456666666654
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.73 E-value=4.3e+02 Score=23.16 Aligned_cols=22 Identities=5% Similarity=-0.121 Sum_probs=13.2
Q ss_pred HHhHHhhcCChHHHHHHHhhCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+...+..|+.+-+..+++...
T Consensus 176 ~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 176 PLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHhccc
Confidence 3344456677777777776543
No 341
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.44 E-value=1e+02 Score=21.02 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHH
Q 046354 187 AGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 187 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 224 (510)
....++|..+++.+.......|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677777888777777777777777777776654433
No 342
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.41 E-value=3.3e+02 Score=21.72 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 046354 181 ITAYVDAGNMAQASELFNLM 200 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~ 200 (510)
+...++.|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 34445566666666666543
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.11 E-value=1.4e+02 Score=22.99 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=10.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
+..+...+++-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33444444444555555555444
Done!