BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046355
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 152 bits (383), Expect = 6e-38, Method: Composition-based stats.
Identities = 71/119 (59%), Positives = 91/119 (76%), Gaps = 5/119 (4%)
Query: 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTF 70
R+PH V +P+P QGHINP+F+LAKLLH +GFHITFVNTE+N +RLLKS+GP + + F
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 71 RFETIPDGLPP--SDADATQDIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127
FE+IPDGL P D D +QD+P+LC S R+ P+ ELLTRLN+S +NV PPVTC+
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHS--TNV-PPVTCL 122
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 8 QHPRRPHAVCVPHPAQGHINPMFQLAK-LLHHKGFHITFVNTEFNQRRLLKSQGPDSLNA 66
+ + PH +P P GH+ P+ + AK L+H G +TFV + +GP
Sbjct: 2 EESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV---------IAGEGP----- 47
Query: 67 VPTFRFETIPDGLPPSDADA---TQDIPSLCDSTR 98
P+ T+ D LP S + D+ L STR
Sbjct: 48 -PSKAQRTVLDSLPSSISSVFLPPVDLTDLSSSTR 81
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 16 VCVPHPAQGHINPMFQLAKLL--HHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFE 73
+ +P P GH+ + AKLL H K +IT +F S L + P +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLI 72
Query: 74 TIPDGLPP 81
+P+ PP
Sbjct: 73 DLPEVEPP 80
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 16 VCVPHPAQGHINPMFQLAKLL--HHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFE 73
+ +P P GH+ + AKLL H K +IT +F S L + P +
Sbjct: 13 IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLI 72
Query: 74 TIPDGLPP 81
+P+ PP
Sbjct: 73 DLPEVEPP 80
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 25 HINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGP----DSLNAVPTFRFETIPDGLP 80
H+N FQ AK+ H G +T++ + + + D NA+ RF + P
Sbjct: 195 HLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFP 254
Query: 81 -PSDAD 85
SDAD
Sbjct: 255 GASDAD 260
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 25 HINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGP----DSLNAVPTFRFETIPDGLP 80
H+N FQ AK+ H G +T++ + + + D NA+ RF + P
Sbjct: 197 HLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFP 256
Query: 81 -PSDAD 85
SDAD
Sbjct: 257 GASDAD 262
>pdb|2DUW|A Chain A, Solution Structure Of Putative Coa-Binding Protein Of
Klebsiella Pneumoniae
Length = 145
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 28 PMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQG-------PDSLNAVPTFR 71
P +++ K L +G+H+ V+ + + LL QG P+ ++ V FR
Sbjct: 28 PSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFR 78
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 22 AQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKS-----------QGPDSLNAVPTF 70
A GH+NP ++ + L +G +T+ ++ + GPD A P
Sbjct: 17 AHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPD---ADPEA 73
Query: 71 RFETIPDGLPPSDADATQDIPSLCDS 96
T+ D + P DA Q +P L D+
Sbjct: 74 WGSTLLDNVEPFLNDAIQALPQLADA 99
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 73 ETIPDGLPPSDADATQDIPSLCDSTRRTCSAPFQELLTRLNNSALSN 119
ETI D L + + I L S+R A QELLT L N LSN
Sbjct: 21 ETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQN--LSN 65
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 9 HPRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48
H R+ H + GH+ P L L +G IT+V T
Sbjct: 1 HXRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,917,512
Number of Sequences: 62578
Number of extensions: 141956
Number of successful extensions: 220
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)