Query 046355
Match_columns 127
No_of_seqs 155 out of 1137
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 99.9 8.3E-23 1.8E-27 159.4 12.1 107 9-127 2-108 (449)
2 PLN02555 limonoid glucosyltran 99.9 2.2E-21 4.7E-26 152.5 12.6 111 11-127 6-120 (480)
3 PLN02152 indole-3-acetate beta 99.8 1.5E-20 3.2E-25 147.0 12.0 106 12-127 3-110 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 99.8 1.4E-20 3.1E-25 147.1 11.6 106 9-127 4-109 (451)
5 PLN02562 UDP-glycosyltransfera 99.8 3.4E-20 7.4E-25 144.9 12.5 103 11-127 5-107 (448)
6 PLN02534 UDP-glycosyltransfera 99.8 2E-19 4.4E-24 141.7 11.9 106 12-127 8-123 (491)
7 PLN02670 transferase, transfer 99.8 2.1E-19 4.5E-24 141.1 11.3 97 10-111 4-108 (472)
8 PLN02863 UDP-glucoronosyl/UDP- 99.8 3.8E-19 8.2E-24 139.9 11.6 97 10-112 7-111 (477)
9 PLN02207 UDP-glycosyltransfera 99.8 1.3E-18 2.8E-23 136.5 10.8 114 12-127 3-119 (468)
10 PLN00164 glucosyltransferase; 99.8 1.5E-18 3.3E-23 136.7 11.2 105 11-127 2-114 (480)
11 PLN00414 glycosyltransferase f 99.8 3E-18 6.4E-23 133.9 11.0 67 11-82 3-73 (446)
12 PLN02554 UDP-glycosyltransfera 99.8 1.8E-18 4E-23 136.3 9.8 108 12-127 2-116 (481)
13 PLN02764 glycosyltransferase f 99.8 3.3E-18 7.2E-23 133.7 11.0 97 11-111 4-106 (453)
14 PLN03004 UDP-glycosyltransfera 99.8 7.8E-18 1.7E-22 131.7 11.6 109 12-127 3-116 (451)
15 PLN02210 UDP-glucosyl transfer 99.8 8.2E-18 1.8E-22 131.8 11.7 94 9-110 5-100 (456)
16 PLN02992 coniferyl-alcohol glu 99.8 8.6E-18 1.9E-22 132.2 11.6 93 11-112 4-101 (481)
17 PLN02448 UDP-glycosyltransfera 99.8 1.4E-17 3.1E-22 130.5 12.4 98 8-112 6-105 (459)
18 PLN03015 UDP-glucosyl transfer 99.8 1.3E-17 2.8E-22 130.8 11.8 100 12-112 3-104 (470)
19 PLN02167 UDP-glycosyltransfera 99.7 2.4E-17 5.3E-22 129.7 10.3 115 11-127 2-122 (475)
20 PLN02208 glycosyltransferase f 99.7 5.7E-17 1.2E-21 126.6 11.2 95 11-111 3-105 (442)
21 PLN03007 UDP-glucosyltransfera 99.7 7.1E-16 1.5E-20 121.6 11.8 46 11-56 4-49 (482)
22 cd03784 GT1_Gtf_like This fami 98.7 8.2E-08 1.8E-12 73.6 7.0 55 14-78 2-56 (401)
23 KOG1192 UDP-glucuronosyl and U 98.5 8.1E-08 1.8E-12 75.6 4.3 43 12-54 5-47 (496)
24 TIGR01426 MGT glycosyltransfer 98.5 5E-07 1.1E-11 69.4 8.3 52 18-79 1-52 (392)
25 PF03033 Glyco_transf_28: Glyc 98.4 1.4E-06 3E-11 57.4 6.0 54 15-78 1-54 (139)
26 COG1819 Glycosyl transferases, 97.2 0.00067 1.5E-08 53.0 4.8 44 13-56 2-45 (406)
27 PF00201 UDPGT: UDP-glucoronos 96.4 0.0013 2.8E-08 52.1 1.2 59 14-81 2-60 (500)
28 PHA03392 egt ecdysteroid UDP-g 94.8 0.047 1E-06 43.9 4.5 36 14-49 22-58 (507)
29 PRK12446 undecaprenyldiphospho 92.7 0.23 5E-06 38.0 4.6 38 14-51 3-40 (352)
30 TIGR00661 MJ1255 conserved hyp 91.7 0.34 7.3E-06 36.4 4.4 34 16-50 4-37 (321)
31 PF13528 Glyco_trans_1_3: Glyc 86.3 1.7 3.6E-05 32.1 4.7 30 21-52 10-39 (318)
32 COG3980 spsG Spore coat polysa 84.1 1.4 3E-05 33.3 3.3 33 20-52 12-44 (318)
33 COG4671 Predicted glycosyl tra 83.6 5.4 0.00012 31.1 6.4 59 10-77 7-69 (400)
34 TIGR01133 murG undecaprenyldip 83.0 2.7 5.8E-05 31.3 4.6 36 14-49 2-37 (348)
35 cd03785 GT1_MurG MurG is an N- 82.2 2.7 5.8E-05 31.3 4.4 35 15-49 2-36 (350)
36 TIGR03590 PseG pseudaminic aci 80.5 2.4 5.3E-05 31.3 3.6 29 21-49 12-40 (279)
37 PRK02261 methylaspartate mutas 79.2 8.8 0.00019 25.5 5.6 45 11-55 2-46 (137)
38 PRK00726 murG undecaprenyldiph 79.1 4.3 9.4E-05 30.5 4.6 37 14-50 3-39 (357)
39 cd02067 B12-binding B12 bindin 78.5 7 0.00015 24.8 4.9 42 14-55 1-42 (119)
40 COG0707 MurG UDP-N-acetylgluco 76.3 6.2 0.00013 30.5 4.8 35 15-49 3-38 (357)
41 cd03816 GT1_ALG1_like This fam 75.5 6.7 0.00014 30.5 4.8 36 14-49 5-40 (415)
42 PF13439 Glyco_transf_4: Glyco 75.2 4 8.7E-05 26.6 3.1 26 24-49 13-38 (177)
43 PF13579 Glyco_trans_4_4: Glyc 74.3 4.1 9E-05 26.0 3.0 21 29-49 7-27 (160)
44 cd03808 GT1_cap1E_like This fa 73.1 6.2 0.00013 28.4 4.0 37 15-51 2-38 (359)
45 KOG2941 Beta-1,4-mannosyltrans 72.8 14 0.00031 28.9 5.8 63 6-77 6-70 (444)
46 cd03817 GT1_UGDG_like This fam 72.3 7.7 0.00017 28.2 4.3 31 19-49 10-40 (374)
47 TIGR02370 pyl_corrinoid methyl 71.7 17 0.00037 25.5 5.8 47 11-57 83-129 (197)
48 cd02070 corrinoid_protein_B12- 71.0 16 0.00035 25.6 5.5 45 12-56 82-126 (201)
49 cd04962 GT1_like_5 This family 68.9 7 0.00015 29.1 3.5 35 15-49 3-38 (371)
50 cd03805 GT1_ALG2_like This fam 67.5 12 0.00026 28.2 4.6 34 16-49 5-39 (392)
51 PF08897 DUF1841: Domain of un 67.0 3.9 8.6E-05 27.4 1.6 17 21-37 57-73 (137)
52 cd03821 GT1_Bme6_like This fam 66.0 12 0.00025 27.2 4.1 28 22-49 13-40 (375)
53 PF13477 Glyco_trans_4_2: Glyc 65.3 13 0.00027 23.7 3.8 34 15-51 2-35 (139)
54 PRK13609 diacylglycerol glucos 65.2 13 0.00028 28.3 4.4 35 13-47 5-40 (380)
55 TIGR00215 lpxB lipid-A-disacch 64.5 10 0.00022 29.3 3.7 36 13-49 6-41 (385)
56 cd03818 GT1_ExpC_like This fam 64.5 7.8 0.00017 29.6 3.1 22 28-49 12-33 (396)
57 cd02069 methionine_synthase_B1 63.7 30 0.00064 24.7 5.7 46 11-56 87-132 (213)
58 cd03814 GT1_like_2 This family 63.4 15 0.00033 26.7 4.3 29 23-51 14-42 (364)
59 PF04244 DPRP: Deoxyribodipyri 62.5 10 0.00022 27.4 3.2 26 24-49 46-71 (224)
60 cd03820 GT1_amsD_like This fam 61.3 21 0.00046 25.4 4.8 35 17-51 5-41 (348)
61 cd03800 GT1_Sucrose_synthase T 60.1 7.9 0.00017 29.0 2.4 27 23-49 21-47 (398)
62 cd01635 Glycosyltransferase_GT 59.5 18 0.00039 24.3 3.9 26 22-47 12-37 (229)
63 cd03794 GT1_wbuB_like This fam 58.3 11 0.00025 27.4 2.9 28 23-50 14-41 (394)
64 PF12146 Hydrolase_4: Putative 58.1 22 0.00047 21.1 3.6 33 14-46 17-49 (79)
65 cd02071 MM_CoA_mut_B12_BD meth 57.2 38 0.00082 21.7 4.9 42 14-55 1-42 (122)
66 cd03823 GT1_ExpE7_like This fa 57.1 22 0.00047 25.8 4.2 28 23-50 15-42 (359)
67 cd04951 GT1_WbdM_like This fam 55.9 18 0.00039 26.5 3.6 27 22-48 11-37 (360)
68 cd03811 GT1_WabH_like This fam 55.5 26 0.00055 25.0 4.3 29 21-49 10-38 (353)
69 PF02310 B12-binding: B12 bind 55.5 39 0.00085 21.0 4.8 38 14-51 2-39 (121)
70 PLN02871 UDP-sulfoquinovose:DA 50.3 50 0.0011 26.0 5.5 39 12-50 58-101 (465)
71 cd03795 GT1_like_4 This family 49.8 34 0.00075 25.0 4.3 29 22-50 13-41 (357)
72 PRK10307 putative glycosyl tra 48.7 21 0.00045 27.4 3.1 21 29-49 21-41 (412)
73 PF00070 Pyr_redox: Pyridine n 48.6 26 0.00057 20.3 2.9 22 28-49 10-31 (80)
74 PF00448 SRP54: SRP54-type pro 48.4 35 0.00076 23.9 4.0 35 15-49 4-38 (196)
75 PF02441 Flavoprotein: Flavopr 48.4 59 0.0013 20.9 4.8 41 14-55 2-42 (129)
76 TIGR03449 mycothiol_MshA UDP-N 47.5 21 0.00046 27.1 2.9 28 22-49 19-46 (405)
77 COG4081 Uncharacterized protei 47.5 46 0.001 22.3 4.1 40 15-54 6-46 (148)
78 KOG2144 Tyrosyl-tRNA synthetas 47.3 24 0.00053 26.9 3.1 36 6-50 40-75 (360)
79 PF02142 MGS: MGS-like domain 45.2 23 0.00051 21.6 2.4 26 29-56 2-27 (95)
80 COG0162 TyrS Tyrosyl-tRNA synt 44.8 27 0.00059 27.6 3.2 26 23-49 48-73 (401)
81 cd02034 CooC The accessory pro 44.7 69 0.0015 20.4 4.6 37 14-50 1-37 (116)
82 PF03720 UDPG_MGDP_dh_C: UDP-g 44.2 32 0.00069 21.4 2.9 23 27-49 17-39 (106)
83 TIGR00064 ftsY signal recognit 43.8 61 0.0013 24.0 4.8 37 14-50 74-110 (272)
84 PTZ00445 p36-lilke protein; Pr 43.6 26 0.00056 25.4 2.6 27 23-49 73-100 (219)
85 COG5148 RPN10 26S proteasome r 43.6 67 0.0014 23.0 4.6 36 14-49 110-145 (243)
86 cd03801 GT1_YqgM_like This fam 41.1 52 0.0011 23.4 4.1 27 23-49 14-40 (374)
87 cd03115 SRP The signal recogni 40.8 80 0.0017 21.1 4.7 36 15-50 3-38 (173)
88 PF04127 DFP: DNA / pantothena 40.4 35 0.00075 23.9 2.9 33 16-50 21-53 (185)
89 COG1484 DnaC DNA replication p 39.7 84 0.0018 23.0 4.9 46 14-59 107-152 (254)
90 cd00861 ProRS_anticodon_short 39.3 82 0.0018 18.5 4.4 34 14-47 3-38 (94)
91 cd03807 GT1_WbnK_like This fam 39.0 65 0.0014 23.1 4.3 30 20-49 9-38 (365)
92 PF13450 NAD_binding_8: NAD(P) 38.4 49 0.0011 18.8 2.9 19 30-48 9-27 (68)
93 cd04955 GT1_like_6 This family 38.1 61 0.0013 23.8 4.1 26 24-49 16-41 (363)
94 KOG2585 Uncharacterized conser 37.9 76 0.0016 25.5 4.6 39 10-49 264-302 (453)
95 PRK13604 luxD acyl transferase 37.7 1E+02 0.0022 23.5 5.2 33 13-46 38-70 (307)
96 PRK00025 lpxB lipid-A-disaccha 37.0 51 0.0011 24.9 3.6 33 14-47 3-35 (380)
97 cd03798 GT1_wlbH_like This fam 36.1 67 0.0015 23.0 4.0 29 22-50 13-41 (377)
98 PRK00771 signal recognition pa 35.4 93 0.002 24.9 4.9 37 14-50 97-133 (437)
99 PF07015 VirC1: VirC1 protein; 35.3 1.1E+02 0.0023 22.4 4.8 40 14-53 3-43 (231)
100 cd01988 Na_H_Antiporter_C The 35.1 1E+02 0.0022 19.0 4.3 32 16-47 2-34 (132)
101 PF08026 Antimicrobial_5: Bee 34.9 7.7 0.00017 19.7 -0.8 15 19-33 17-31 (39)
102 smart00851 MGS MGS-like domain 34.7 41 0.00088 20.2 2.3 25 29-55 2-26 (90)
103 KOG3062 RNA polymerase II elon 34.2 1.1E+02 0.0024 22.7 4.7 35 13-47 2-38 (281)
104 cd03796 GT1_PIG-A_like This fa 34.1 46 0.001 25.4 3.0 27 23-49 14-40 (398)
105 PF10657 RC-P840_PscD: Photosy 33.1 77 0.0017 20.9 3.4 42 10-51 44-85 (144)
106 PRK08305 spoVFB dipicolinate s 32.9 87 0.0019 22.2 3.9 38 14-52 7-45 (196)
107 KOG1838 Alpha/beta hydrolase [ 32.9 1.7E+02 0.0036 23.4 5.8 40 10-49 123-163 (409)
108 COG2185 Sbm Methylmalonyl-CoA 32.6 90 0.0019 21.1 3.8 38 10-47 10-47 (143)
109 COG1255 Uncharacterized protei 32.3 55 0.0012 21.5 2.6 19 29-47 25-43 (129)
110 cd03825 GT1_wcfI_like This fam 31.6 92 0.002 22.7 4.2 36 15-50 3-40 (365)
111 cd03819 GT1_WavL_like This fam 31.6 59 0.0013 23.8 3.1 31 19-49 5-36 (355)
112 PF00289 CPSase_L_chain: Carba 31.6 35 0.00076 21.7 1.6 28 19-48 78-105 (110)
113 PF09140 MipZ: ATPase MipZ; I 31.5 1.1E+02 0.0024 22.8 4.3 36 14-49 1-38 (261)
114 PF09001 DUF1890: Domain of un 31.2 1.1E+02 0.0023 20.6 3.9 30 27-56 14-43 (139)
115 PF03853 YjeF_N: YjeF-related 30.9 62 0.0014 22.0 2.9 35 11-47 24-59 (169)
116 cd01452 VWA_26S_proteasome_sub 30.6 1.5E+02 0.0033 20.8 4.8 35 14-48 110-144 (187)
117 cd00860 ThrRS_anticodon ThrRS 30.5 1.1E+02 0.0025 17.6 4.3 34 14-48 3-36 (91)
118 PRK15043 transcriptional regul 30.5 1.4E+02 0.003 22.0 4.7 37 13-50 163-199 (243)
119 cd02065 B12-binding_like B12 b 30.3 1.4E+02 0.003 18.5 5.0 39 15-53 2-40 (125)
120 PF02702 KdpD: Osmosensitive K 30.1 1.2E+02 0.0026 21.9 4.2 35 11-45 4-38 (211)
121 cd03812 GT1_CapH_like This fam 30.0 82 0.0018 23.0 3.6 33 17-49 5-38 (358)
122 PF01316 Arg_repressor: Argini 29.9 29 0.00063 20.4 1.0 24 30-53 23-46 (70)
123 TIGR00421 ubiX_pad polyprenyl 29.9 89 0.0019 21.7 3.5 27 29-55 15-41 (181)
124 PRK09620 hypothetical protein; 29.7 61 0.0013 23.4 2.8 32 15-48 20-51 (229)
125 TIGR01680 Veg_Stor_Prot vegeta 28.8 96 0.0021 23.3 3.7 27 25-51 146-172 (275)
126 TIGR02468 sucrsPsyn_pln sucros 28.5 3.3E+02 0.0073 24.6 7.4 26 24-49 196-223 (1050)
127 PRK10985 putative hydrolase; P 28.4 1.6E+02 0.0035 21.9 5.0 37 11-47 57-94 (324)
128 cd01983 Fer4_NifH The Fer4_Nif 28.0 1.2E+02 0.0027 17.2 4.8 33 15-47 2-34 (99)
129 PRK06222 ferredoxin-NADP(+) re 27.8 1E+02 0.0022 22.7 3.8 37 14-52 100-136 (281)
130 KOG0991 Replication factor C, 27.6 98 0.0021 23.3 3.5 29 10-38 46-74 (333)
131 cd01122 GP4d_helicase GP4d_hel 27.6 1.9E+02 0.0041 20.8 5.1 38 14-51 32-70 (271)
132 cd03802 GT1_AviGT4_like This f 27.5 1E+02 0.0022 22.3 3.8 26 24-49 20-45 (335)
133 TIGR02964 xanthine_xdhC xanthi 27.3 1.5E+02 0.0033 21.6 4.6 33 12-49 100-132 (246)
134 PHA02519 plasmid partition pro 27.2 1.8E+02 0.004 22.7 5.2 35 13-47 106-142 (387)
135 cd03791 GT1_Glycogen_synthase_ 27.0 62 0.0013 25.3 2.6 23 28-50 21-43 (476)
136 PF08323 Glyco_transf_5: Starc 26.8 58 0.0013 23.5 2.3 24 27-50 20-43 (245)
137 PRK06732 phosphopantothenate-- 26.8 74 0.0016 22.8 2.8 32 15-48 17-48 (229)
138 PF01591 6PF2K: 6-phosphofruct 26.7 1.6E+02 0.0035 21.2 4.5 38 12-49 12-49 (222)
139 PF03767 Acid_phosphat_B: HAD 26.6 67 0.0015 23.1 2.6 23 28-50 119-141 (229)
140 KOG0223 Aquaporin (major intri 26.4 38 0.00083 24.8 1.3 17 23-39 67-83 (238)
141 cd02069 methionine_synthase_B1 26.4 1.2E+02 0.0026 21.6 3.8 40 10-49 137-176 (213)
142 PF08357 SEFIR: SEFIR domain; 26.2 1.1E+02 0.0025 19.9 3.5 31 15-45 4-35 (150)
143 TIGR01425 SRP54_euk signal rec 25.8 1.5E+02 0.0032 23.8 4.5 38 13-50 100-138 (429)
144 COG4559 ABC-type hemin transpo 25.6 1E+02 0.0022 22.7 3.3 40 14-53 161-204 (259)
145 PLN02275 transferase, transfer 25.6 1.6E+02 0.0035 22.4 4.6 37 10-48 4-41 (371)
146 PRK05802 hypothetical protein; 25.5 1E+02 0.0023 23.3 3.5 37 14-52 174-210 (320)
147 TIGR01675 plant-AP plant acid 25.4 1.3E+02 0.0027 22.0 3.8 26 26-51 122-147 (229)
148 PHA02518 ParA-like protein; Pr 25.4 1.1E+02 0.0025 20.8 3.5 29 21-49 10-38 (211)
149 TIGR00959 ffh signal recogniti 25.3 1.7E+02 0.0036 23.4 4.7 37 14-50 101-138 (428)
150 PF00175 NAD_binding_1: Oxidor 25.1 1.4E+02 0.003 17.9 3.5 26 26-51 8-35 (109)
151 TIGR02472 sucr_P_syn_N sucrose 25.1 81 0.0018 24.7 3.0 24 26-49 29-54 (439)
152 PF07942 N2227: N2227-like pro 24.8 1.4E+02 0.003 22.4 3.9 27 13-45 57-83 (270)
153 PRK10867 signal recognition pa 24.4 1.6E+02 0.0034 23.6 4.4 39 12-50 99-139 (433)
154 PRK10116 universal stress prot 24.4 1.8E+02 0.004 18.3 4.2 32 16-47 6-38 (142)
155 PRK14974 cell division protein 24.1 2.6E+02 0.0057 21.5 5.5 36 14-49 142-177 (336)
156 TIGR03264 met_CoM_red_C methyl 24.0 1E+02 0.0022 21.7 2.9 33 14-46 35-68 (194)
157 PF08384 NPP: Pro-opiomelanoco 23.8 22 0.00047 19.1 -0.3 9 20-28 35-43 (45)
158 TIGR03172 probable selenium-de 23.7 1.3E+02 0.0029 21.9 3.6 27 23-49 8-34 (232)
159 COG2084 MmsB 3-hydroxyisobutyr 23.5 86 0.0019 23.6 2.7 27 19-48 4-31 (286)
160 smart00382 AAA ATPases associa 23.0 1.8E+02 0.0039 17.4 3.9 37 13-49 3-39 (148)
161 PRK07313 phosphopantothenoylcy 23.0 2.1E+02 0.0045 19.8 4.4 39 14-53 3-41 (182)
162 TIGR02113 coaC_strep phosphopa 23.0 1.8E+02 0.0038 20.1 4.0 32 22-53 9-40 (177)
163 PLN02211 methyl indole-3-aceta 22.7 2.4E+02 0.0051 20.5 4.9 36 11-47 17-52 (273)
164 PF01738 DLH: Dienelactone hyd 22.7 2.5E+02 0.0053 19.3 4.8 35 11-46 13-47 (218)
165 cd02037 MRP-like MRP (Multiple 22.5 2E+02 0.0043 19.1 4.2 31 19-49 7-37 (169)
166 cd00561 CobA_CobO_BtuR ATP:cor 22.0 2.7E+02 0.0058 19.0 4.7 33 14-46 4-36 (159)
167 TIGR00234 tyrS tyrosyl-tRNA sy 22.0 1E+02 0.0022 24.1 2.9 26 23-49 46-71 (377)
168 cd00395 Tyr_Trp_RS_core cataly 21.9 93 0.002 23.1 2.6 24 24-48 16-39 (273)
169 TIGR00176 mobB molybdopterin-g 21.8 2.6E+02 0.0055 18.7 4.7 33 15-47 2-34 (155)
170 TIGR03087 stp1 sugar transfera 21.6 77 0.0017 24.2 2.2 31 18-49 8-39 (397)
171 COG0300 DltE Short-chain dehyd 21.5 98 0.0021 23.1 2.6 18 30-47 20-37 (265)
172 cd00859 HisRS_anticodon HisRS 21.5 1.7E+02 0.0037 16.5 3.9 34 14-48 3-36 (91)
173 PRK05986 cob(I)alamin adenolsy 21.5 2.9E+02 0.0062 19.5 4.9 35 12-46 22-56 (191)
174 PF13478 XdhC_C: XdhC Rossmann 21.4 1.3E+02 0.0028 19.8 3.0 26 22-49 5-30 (136)
175 cd03799 GT1_amsK_like This is 21.3 2.2E+02 0.0047 20.6 4.5 24 26-49 14-37 (355)
176 PF00230 MIP: Major intrinsic 20.9 58 0.0013 23.0 1.3 16 24-39 71-86 (227)
177 TIGR02114 coaB_strep phosphopa 20.8 1.1E+02 0.0025 21.9 2.8 31 15-47 16-46 (227)
178 cd00805 TyrRS_core catalytic c 20.7 1.2E+02 0.0027 22.3 3.1 26 23-49 16-41 (269)
179 PRK05920 aromatic acid decarbo 20.6 2.2E+02 0.0048 20.3 4.2 41 14-55 5-45 (204)
180 PLN03050 pyridoxine (pyridoxam 20.6 1.1E+02 0.0024 22.4 2.7 33 13-47 61-94 (246)
181 PF06153 DUF970: Protein of un 20.5 94 0.002 20.0 2.1 19 31-49 15-33 (109)
182 PRK04280 arginine repressor; P 20.4 77 0.0017 21.3 1.8 24 31-54 23-46 (148)
183 cd00532 MGS-like MGS-like doma 20.3 1E+02 0.0023 19.2 2.3 26 28-55 13-38 (112)
184 cd01423 MGS_CPS_I_III Methylgl 20.2 1.1E+02 0.0023 19.3 2.3 25 29-55 15-39 (116)
185 TIGR02095 glgA glycogen/starch 20.2 1E+02 0.0022 24.3 2.7 24 27-50 21-44 (473)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.89 E-value=8.3e-23 Score=159.40 Aligned_cols=107 Identities=29% Similarity=0.526 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCccC
Q 046355 9 HPRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADATQ 88 (127)
Q Consensus 9 ~~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~~~ 88 (127)
+++++|||+||||+|||++||++|||+|+++|++|||++|+.+.+++... . .+.|+|+.+|||+|+++.+..+
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--~-----~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--P-----SSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--C-----CCCEEEEEcCCCCCCccccccc
Confidence 34558999999999999999999999999999999999999887654221 0 1259999999999863333334
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 89 DIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
+...++.++.+.+.++|+++|+++..+ + +||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~Pv~cv 108 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQST---D--NPITCI 108 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhcc---C--CCceEE
Confidence 566777777767899999999987543 2 577886
No 2
>PLN02555 limonoid glucosyltransferase
Probab=99.87 E-value=2.2e-21 Score=152.53 Aligned_cols=111 Identities=28% Similarity=0.437 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhcc---CC-CCCCCCCCeeeeecCCCCCCCCCCc
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQ---GP-DSLNAVPTFRFETIPDGLPPSDADA 86 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~---~~-~~~~~~~~i~f~~lpdg~p~~~~~~ 86 (127)
.++|||++|||+|||+|||++|||+|+++|+.|||++|+.+..++.+.. .. ....+...++|+.+|||+|++ .+.
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~-~~~ 84 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAED-DPR 84 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCC-ccc
Confidence 3589999999999999999999999999999999999998777654211 00 000111248888899999763 233
Q ss_pred cCCHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 87 TQDIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
..+...++.++.+.+.++|+++|+++..+ + +||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~--~pv~ci 120 (480)
T PLN02555 85 RQDLDLYLPQLELVGKREIPNLVKRYAEQ---G--RPVSCL 120 (480)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHHhcc---C--CCceEE
Confidence 34555677776667899999999987533 3 678896
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.85 E-value=1.5e-20 Score=147.03 Aligned_cols=106 Identities=28% Similarity=0.486 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhh-CCcEEEEEcCchhH-HHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCccCC
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHH-KGFHITFVNTEFNQ-RRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADATQD 89 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~-~g~~VT~v~t~~~~-~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~~~~ 89 (127)
++|||+||||+|||+|||++|||+|++ +|+.|||++|+.+. +++.... ...+.++|+.+|||+|++.....++
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-----~~~~~i~~~~i~dglp~g~~~~~~~ 77 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-----NNVENLSFLTFSDGFDDGVISNTDD 77 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-----CCCCCEEEEEcCCCCCCcccccccc
Confidence 479999999999999999999999996 79999999998653 3222111 1113599999999988642122345
Q ss_pred HHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 90 IPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
...++..+.+.+.++|+++++++... + +||+||
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~---~--~pv~ci 110 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNG---D--SPVTCL 110 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhcc---C--CCceEE
Confidence 55566666678899999999987533 3 678886
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.84 E-value=1.4e-20 Score=147.06 Aligned_cols=106 Identities=40% Similarity=0.655 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCccC
Q 046355 9 HPRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADATQ 88 (127)
Q Consensus 9 ~~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~~~ 88 (127)
+..++|||+||||+|||++||++|||+|+++|+.|||++|+.|+.+. .. ....|+|+.+|+|+|+++.+..
T Consensus 4 ~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~-----~~---~~~~i~~~~ip~glp~~~~~~~- 74 (451)
T PLN02410 4 KPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP-----SD---DFTDFQFVTIPESLPESDFKNL- 74 (451)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc-----cc---CCCCeEEEeCCCCCCccccccc-
Confidence 33567999999999999999999999999999999999999875311 00 1135999999999986432322
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 89 DIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
+...++.++.+.+.++++++|+++..+. + ++++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~--~--~p~~cV 109 (451)
T PLN02410 75 GPIEFLHKLNKECQVSFKDCLGQLVLQQ--G--NEIACV 109 (451)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhcc--C--CCcEEE
Confidence 2335666666678899999999875431 3 577885
No 5
>PLN02562 UDP-glycosyltransferase
Probab=99.84 E-value=3.4e-20 Score=144.91 Aligned_cols=103 Identities=32% Similarity=0.594 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCccCCH
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADATQDI 90 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~~~~~ 90 (127)
.++|||++|||+|||+|||++|||+|+++|+.|||++|+.+.+++...... .+.|+|+.+|+|++++ . ..+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~-----~~~i~~v~lp~g~~~~-~--~~~~ 76 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP-----KLGITFMSISDGQDDD-P--PRDF 76 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC-----CCCEEEEECCCCCCCC-c--cccH
Confidence 347999999999999999999999999999999999999887665433111 1259999999987642 1 1244
Q ss_pred HHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 91 PSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
..++.++...+.++++++++++... +||+||
T Consensus 77 ~~l~~a~~~~~~~~l~~ll~~l~~~------~pv~cv 107 (448)
T PLN02562 77 FSIENSMENTMPPQLERLLHKLDED------GEVACM 107 (448)
T ss_pred HHHHHHHHHhchHHHHHHHHHhcCC------CCcEEE
Confidence 4555565556899999999987542 577885
No 6
>PLN02534 UDP-glycosyltransferase
Probab=99.81 E-value=2e-19 Score=141.75 Aligned_cols=106 Identities=28% Similarity=0.491 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecC-----CCCCCCCCCc
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIP-----DGLPPSDADA 86 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lp-----dg~p~~~~~~ 86 (127)
++|||++|||+|||+|||++|||+|+++|+.|||++|+.+..++..........+ ..|+|+.+| ||+|++ .+.
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~-~~i~~~~lp~p~~~dglp~~-~~~ 85 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESG-LPIRLVQIPFPCKEVGLPIG-CEN 85 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccC-CCeEEEEcCCCCccCCCCCC-ccc
Confidence 4699999999999999999999999999999999999988766543321110111 138999888 688763 232
Q ss_pred cCC-----HHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 87 TQD-----IPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 87 ~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
.++ ....+......++++|+++|++. + ++++||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~------~--~pp~cI 123 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA------K--PPPSCI 123 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc------C--CCCcEE
Confidence 222 22222222345778888888753 2 456785
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=99.81 E-value=2.1e-19 Score=141.09 Aligned_cols=97 Identities=31% Similarity=0.528 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecC----CCCCCCCCC
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIP----DGLPPSDAD 85 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lp----dg~p~~~~~ 85 (127)
..++|||++|||+|||++||++|||+|+++|++|||++|+.+..++.+... . ....|+|+.+| ||+|++ .+
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~-~---~~~~i~~~~lp~p~~dglp~~-~~ 78 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS-Q---LSSSITLVSFPLPSVPGLPSS-AE 78 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc-c---CCCCeeEEECCCCccCCCCCC-cc
Confidence 345799999999999999999999999999999999999988876543211 0 11248999888 778763 23
Q ss_pred ccCCHH----HHHHHHHHHchHHHHHHHHH
Q 046355 86 ATQDIP----SLCDSTRRTCSAPFQELLTR 111 (127)
Q Consensus 86 ~~~~~~----~~~~~~~~~~~~~~~~~l~~ 111 (127)
..++.. .++....+.++++|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLET 108 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHh
Confidence 333332 23444455678888888765
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.80 E-value=3.8e-19 Score=139.95 Aligned_cols=97 Identities=25% Similarity=0.380 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecC----CCCCCCCCC
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIP----DGLPPSDAD 85 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lp----dg~p~~~~~ 85 (127)
..++|||++|||+|||++||++|||+|+++|+.|||++|+.+++++...... .+.|+|+.+| +++|++ .+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~-----~~~i~~~~lp~P~~~~lPdG-~~ 80 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK-----HPSIETLVLPFPSHPSIPSG-VE 80 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc-----CCCeeEEeCCCCCcCCCCCC-Cc
Confidence 3458999999999999999999999999999999999999998776432111 1247766544 245543 22
Q ss_pred ccCCH----HHHHHHHHHHchHHHHHHHHHh
Q 046355 86 ATQDI----PSLCDSTRRTCSAPFQELLTRL 112 (127)
Q Consensus 86 ~~~~~----~~~~~~~~~~~~~~~~~~l~~l 112 (127)
..++. ...+......+.++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~ 111 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSH 111 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhC
Confidence 22221 1122222345677888877753
No 9
>PLN02207 UDP-glycosyltransferase
Probab=99.78 E-value=1.3e-18 Score=136.49 Aligned_cols=114 Identities=16% Similarity=0.243 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCC--cEEEEEcCchhH-HHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCccC
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKG--FHITFVNTEFNQ-RRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADATQ 88 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g--~~VT~v~t~~~~-~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~~~ 88 (127)
++|||+||||+|||++||++|||+|+++| +.|||++|+.+. ..+....... ....+.|+|+.+||+.+....+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSI-ASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhc-cCCCCCeEEEEeCCCCCCCcccccc
Confidence 47999999999999999999999999998 999999999765 2221111100 0111359999999764311101123
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 89 DIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
+...++..+.+.+.+++++.++++..+...+ .+||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cv 119 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGF 119 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEE
Confidence 4444444444566555555555443210001 1567885
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=99.78 E-value=1.5e-18 Score=136.67 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCC----cEEEEEcCchhHH----HhhhccCCCCCCCCCCeeeeecCCCCCCC
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKG----FHITFVNTEFNQR----RLLKSQGPDSLNAVPTFRFETIPDGLPPS 82 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g----~~VT~v~t~~~~~----~~~~~~~~~~~~~~~~i~f~~lpdg~p~~ 82 (127)
.++|||++|||+|||++||++|||+|+++| +.|||++|+.+.. ++......... ....|+|+.+|++.++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAA-SGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhccc-CCCCEEEEECCCCCCCC
Confidence 357999999999999999999999999986 8999999876532 23221111001 11259999999875432
Q ss_pred CCCccCCHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 83 DADATQDIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
+.+ +...++..+.+.+.++|+++|+++ . +||+||
T Consensus 81 ~~e---~~~~~~~~~~~~~~~~l~~~L~~l--~------~pv~cI 114 (480)
T PLN00164 81 DAA---GVEEFISRYIQLHAPHVRAAIAGL--S------CPVAAL 114 (480)
T ss_pred ccc---cHHHHHHHHHHhhhHHHHHHHHhc--C------CCceEE
Confidence 222 344556555667889999998875 1 467885
No 11
>PLN00414 glycosyltransferase family protein
Probab=99.77 E-value=3e-18 Score=133.93 Aligned_cols=67 Identities=31% Similarity=0.473 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeec--C--CCCCCC
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETI--P--DGLPPS 82 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~l--p--dg~p~~ 82 (127)
.++|||+||||+|||+|||++|||+|+++|+.|||++|+.+.+++... .. ..+.|+|..+ | +|+|++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~-~~----~~~~i~~~~i~lP~~dGLP~g 73 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPL-NL----FPDSIVFEPLTLPPVDGLPFG 73 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccc-cc----CCCceEEEEecCCCcCCCCCc
Confidence 458999999999999999999999999999999999999876655322 11 1124777544 3 677764
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.77 E-value=1.8e-18 Score=136.27 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCC--cEEEEEcCchhHHHhhh-c--cCCCCCCCCCCeeeeecCCCCCCCCCCc
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKG--FHITFVNTEFNQRRLLK-S--QGPDSLNAVPTFRFETIPDGLPPSDADA 86 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g--~~VT~v~t~~~~~~~~~-~--~~~~~~~~~~~i~f~~lpdg~p~~~~~~ 86 (127)
|.|||++|||+|||++||++|||+|+++| ++|||++|+.+++++.+ . .........+.|+|+.+|++.++.. +
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-E- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-c-
Confidence 57999999999999999999999999998 99999999987654321 0 0000000123599999998875321 1
Q ss_pred cCCHHHHHHHHHHHchHHHHHHHHHhhhcc--CCCCCCCcccC
Q 046355 87 TQDIPSLCDSTRRTCSAPFQELLTRLNNSA--LSNVNPPVTCI 127 (127)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~v~Ci 127 (127)
. ..+.. +.+.+.+++++.|+++..+. ..+ +||+||
T Consensus 80 --~-~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~--~pv~cv 116 (481)
T PLN02554 80 --D-PTFQS-YIDNQKPKVRDAVAKLVDDSSTPSS--PRLAGF 116 (481)
T ss_pred --c-hHHHH-HHHHHHHHHHHHHHHHHhhhccCCC--CCeEEE
Confidence 1 12222 23456677777777764220 012 567885
No 13
>PLN02764 glycosyltransferase family protein
Probab=99.77 E-value=3.3e-18 Score=133.66 Aligned_cols=97 Identities=27% Similarity=0.402 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecC--CCCCCCCCCccC
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIP--DGLPPSDADATQ 88 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lp--dg~p~~~~~~~~ 88 (127)
.++|||+||||+|||++||++|||+|+++|++|||++|+.+.+++... . .......++++.+| ||+|++ .+...
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~--~~~~~~~v~~~~~p~~~glp~g-~e~~~ 79 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N--LFPHNIVFRSVTVPHVDGLPVG-TETVS 79 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c--cCCCCceEEEEECCCcCCCCCc-ccccc
Confidence 458999999999999999999999999999999999999887655331 1 01111237777787 788763 23322
Q ss_pred CHH----HHHHHHHHHchHHHHHHHHH
Q 046355 89 DIP----SLCDSTRRTCSAPFQELLTR 111 (127)
Q Consensus 89 ~~~----~~~~~~~~~~~~~~~~~l~~ 111 (127)
+.. ..+....+.++++|+++|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~~~~~~l~~ 106 (453)
T PLN02764 80 EIPVTSADLLMSAMDLTRDQVEVVVRA 106 (453)
T ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHh
Confidence 221 12222234577888888865
No 14
>PLN03004 UDP-glycosyltransferase
Probab=99.76 E-value=7.8e-18 Score=131.66 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCC----cEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCC-CCCCc
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKG----FHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPP-SDADA 86 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g----~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~-~~~~~ 86 (127)
+.|||+||||+|||++||++|||+|+++| ++||+++++.+...+....... ....+.|+|+.+|++.+. ++.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSV-SSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccc-cCCCCCeEEEEcCCCCCCCCcccc
Confidence 35999999999999999999999999998 5555566665443322111000 011135999999988743 22122
Q ss_pred cCCHHHHHHHHHHHchHHHHHHHHHhhhccCCCCCCCcccC
Q 046355 87 TQDIPSLCDSTRRTCSAPFQELLTRLNNSALSNVNPPVTCI 127 (127)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~Ci 127 (127)
..+...++..+.+.+.++++++|+++.. + +||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~--~pv~cI 116 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSR----N--FNVRAM 116 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCC----C--CCceEE
Confidence 1233333433445788999999998732 2 578886
No 15
>PLN02210 UDP-glucosyl transferase
Probab=99.76 E-value=8.2e-18 Score=131.82 Aligned_cols=94 Identities=28% Similarity=0.414 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCCCccchHHHHHHHHH--HhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCCCc
Q 046355 9 HPRRPHAVCVPHPAQGHINPMFQLAKL--LHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDADA 86 (127)
Q Consensus 9 ~~~~~hvv~vP~p~~GH~~P~l~la~~--L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~ 86 (127)
...++|||+||||+|||++||++|||+ |+++|++|||++|+.+.+++ +.... ....+++..+|+|+|++. +
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~-~~~~~----~~~~~~~~~~~~glp~~~-~- 77 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLL-STVEK----PRRPVDLVFFSDGLPKDD-P- 77 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhh-ccccC----CCCceEEEECCCCCCCCc-c-
Confidence 334579999999999999999999999 55899999999999886654 22111 123488888899988642 1
Q ss_pred cCCHHHHHHHHHHHchHHHHHHHH
Q 046355 87 TQDIPSLCDSTRRTCSAPFQELLT 110 (127)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~ 110 (127)
.+...++..+.+.+.++++++++
T Consensus 78 -~~~~~~~~~~~~~~~~~l~~~l~ 100 (456)
T PLN02210 78 -RAPETLLKSLNKVGAKNLSKIIE 100 (456)
T ss_pred -cCHHHHHHHHHHhhhHHHHHHHh
Confidence 24445666655566667776664
No 16
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.76 E-value=8.6e-18 Score=132.23 Aligned_cols=93 Identities=20% Similarity=0.360 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHh-hCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCC----CCCCCCCC
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLH-HKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPD----GLPPSDAD 85 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~-~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpd----g~p~~~~~ 85 (127)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.+.+++.+.... .+.|+++.+|+ |+|+.+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-----~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-----STGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-----CCCceEEECCCccccCCCCCC--
Confidence 458999999999999999999999998 799999999999887654322111 12488888885 554211
Q ss_pred ccCCHHHHHHHHHHHchHHHHHHHHHh
Q 046355 86 ATQDIPSLCDSTRRTCSAPFQELLTRL 112 (127)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~l 112 (127)
.+....+....+.+.++++++|+++
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (481)
T PLN02992 77 --AHVVTKIGVIMREAVPTLRSKIAEM 101 (481)
T ss_pred --ccHHHHHHHHHHHhHHHHHHHHHhc
Confidence 1222233333456788999999875
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.75 E-value=1.4e-17 Score=130.52 Aligned_cols=98 Identities=36% Similarity=0.554 Sum_probs=75.1
Q ss_pred CCCCCCeEEEEcCCCccchHHHHHHHHHHhhC--CcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCCC
Q 046355 8 QHPRRPHAVCVPHPAQGHINPMFQLAKLLHHK--GFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDAD 85 (127)
Q Consensus 8 ~~~~~~hvv~vP~p~~GH~~P~l~la~~L~~~--g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~ 85 (127)
..+.++|||++|||+|||++||++||++|+++ |+.|||++|+.+..++..... ...++|+.+|+++|++ .+
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp~~~p~~-~~ 78 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIPNVIPSE-LV 78 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECCCCCCCc-cc
Confidence 34556899999999999999999999999999 999999999988766543211 1359999999887753 22
Q ss_pred ccCCHHHHHHHHHHHchHHHHHHHHHh
Q 046355 86 ATQDIPSLCDSTRRTCSAPFQELLTRL 112 (127)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~l 112 (127)
...+...++..+.+.+.+.++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRL 105 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhc
Confidence 223555566665556788888888775
No 18
>PLN03015 UDP-glucosyl transferase
Probab=99.75 E-value=1.3e-17 Score=130.80 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhC-CcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCCCCC-CccCC
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHK-GFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPPSDA-DATQD 89 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~-g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~-~~~~~ 89 (127)
++|||++|||+|||++||++|||+|+++ |+.|||++|+.++.++............+.|+|+.+|++..++ . ....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDN-LVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCcccc-CCCCCcc
Confidence 5799999999999999999999999986 9999999988766543211000101011259999999654321 1 10013
Q ss_pred HHHHHHHHHHHchHHHHHHHHHh
Q 046355 90 IPSLCDSTRRTCSAPFQELLTRL 112 (127)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~l 112 (127)
....+....+.+.++|+++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l 104 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSM 104 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhc
Confidence 33233334457899999999876
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.73 E-value=2.4e-17 Score=129.75 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCc---EEEEEcCchhHH-HhhhccCCCCCCCCCCeeeeecCCCCCCCCCCc
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGF---HITFVNTEFNQR-RLLKSQGPDSLNAVPTFRFETIPDGLPPSDADA 86 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~---~VT~v~t~~~~~-~~~~~~~~~~~~~~~~i~f~~lpdg~p~~~~~~ 86 (127)
+++|||+||||+|||++||++|||+|+++|+ .||+++|..+.. ......... ....+.|+|+.+|++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-IASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-ccCCCCeEEEECCCCCCCccccc
Confidence 4689999999999999999999999999994 567777654321 111000000 01113599999998652211111
Q ss_pred -cCCHHHHHHHHHHHchHHHHHHHHHhhhccC-CCCCCCcccC
Q 046355 87 -TQDIPSLCDSTRRTCSAPFQELLTRLNNSAL-SNVNPPVTCI 127 (127)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~v~Ci 127 (127)
.......+..+.+.+.++++++|+++..+.. .+ .+||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~pv~cv 122 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESD-SVRVAGL 122 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCCeEEE
Confidence 1122223344455678889998887642100 02 1267886
No 20
>PLN02208 glycosyltransferase family protein
Probab=99.72 E-value=5.7e-17 Score=126.62 Aligned_cols=95 Identities=28% Similarity=0.467 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeec--C--CCCCCCCCCc
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETI--P--DGLPPSDADA 86 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~l--p--dg~p~~~~~~ 86 (127)
.++|||+||||+|||++||++|||+|+++|+.|||++|+.+.+++... .. . ...++|..+ | +|+|++ .+.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~-~a--~--~~~i~~~~l~~p~~dgLp~g-~~~ 76 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH-NL--F--PDSIVFHPLTIPPVNGLPAG-AET 76 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc-cC--C--CCceEEEEeCCCCccCCCCC-ccc
Confidence 358999999999999999999999999999999999998776654321 11 1 123566544 4 577653 232
Q ss_pred cCCHH----HHHHHHHHHchHHHHHHHHH
Q 046355 87 TQDIP----SLCDSTRRTCSAPFQELLTR 111 (127)
Q Consensus 87 ~~~~~----~~~~~~~~~~~~~~~~~l~~ 111 (127)
.++.. .++....+.+.+.+++++++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~ 105 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA 105 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22332 12222234456666666643
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.67 E-value=7.1e-16 Score=121.65 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
+++|||++|||+|||+|||++||++|+++|++|||++|+.+..++.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~ 49 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFE 49 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhh
Confidence 3579999999999999999999999999999999999998875543
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.65 E-value=8.2e-08 Score=73.64 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=44.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCC
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDG 78 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg 78 (127)
+|+++++|++||++|++.||+.|.++|+.|+|++++.....+. . .+++|..+++.
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~---------~G~~~~~~~~~ 56 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-A---------AGLEFVPVGGD 56 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-H---------cCCceeeCCCC
Confidence 7999999999999999999999999999999999885443332 1 23667666653
No 23
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.54 E-value=8.1e-08 Score=75.60 Aligned_cols=43 Identities=44% Similarity=0.806 Sum_probs=39.4
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHH
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRR 54 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~ 54 (127)
++|++++|+|++||++|+++||++|+.+|+.||++++..+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~ 47 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALK 47 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcc
Confidence 5799999999999999999999999999999999998866543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.53 E-value=5e-07 Score=69.35 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=41.2
Q ss_pred EcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCC
Q 046355 18 VPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGL 79 (127)
Q Consensus 18 vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~ 79 (127)
+-+|++||++|++.||+.|.++|+.||+++++.+.+.+.. .++.|..+++.+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~----------~G~~~~~~~~~~ 52 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA----------AGAEFVLYGSAL 52 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH----------cCCEEEecCCcC
Confidence 3579999999999999999999999999999876655432 136677776544
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.36 E-value=1.4e-06 Score=57.45 Aligned_cols=54 Identities=20% Similarity=0.424 Sum_probs=42.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCC
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDG 78 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg 78 (127)
|+++.++..||++|++-||+.|.++|.+|++.+.+.....+.. .+++|+.++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~----------~Gl~~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA----------AGLEFVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH----------TT-EEEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc----------cCceEEEecCC
Confidence 6888999999999999999999999999999888766554422 25888887743
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.17 E-value=0.00067 Score=52.95 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=39.1
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
.+|+++..|..||++|++-||+.|..+|+.|+|.+++.....+.
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve 45 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE 45 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH
Confidence 37899999999999999999999999999999999986665543
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.41 E-value=0.0013 Score=52.08 Aligned_cols=59 Identities=31% Similarity=0.410 Sum_probs=28.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCCCCCC
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPDGLPP 81 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpdg~p~ 81 (127)
+|+++|+ +.+|.++|..+++.|+++|..||++++... ..+... ....+++..++++.+.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~ 60 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNPS-------KPSNIRFETYPDPYPE 60 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT-------------S-CCEEEE-----T
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-cccccc-------cccceeeEEEcCCcch
Confidence 5788885 789999999999999999999999986432 111100 0124677777766543
No 28
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=94.83 E-value=0.047 Score=43.95 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=31.7
Q ss_pred eEEEE-cCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCV-PHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~v-P~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.|+.+ |.++..|..-+-.+++.|+++|..||+++..
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 36544 9999999999999999999999999999654
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=92.69 E-value=0.23 Score=38.03 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=31.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
.|++.---.-||+.|.+.+|+.|..+|+.|.|+.+...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 46666666679999999999999999999999986643
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=91.69 E-value=0.34 Score=36.37 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=29.2
Q ss_pred EEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 16 VCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 16 v~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
+.+-..|.||+.|.+.+++.|.+ |+.|+++++..
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 34556788999999999999999 99999997665
No 31
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=86.26 E-value=1.7 Score=32.14 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=26.0
Q ss_pred CCccchHHHHHHHHHHhhCCcEEEEEcCchhH
Q 046355 21 PAQGHINPMFQLAKLLHHKGFHITFVNTEFNQ 52 (127)
Q Consensus 21 p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~ 52 (127)
-|.||+.-.+.||+.| +|..|+|++.....
T Consensus 10 ~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~ 39 (318)
T PF13528_consen 10 HGLGHASRCLALARAL--RGHEVTFITSGPAP 39 (318)
T ss_pred CCcCHHHHHHHHHHHH--ccCceEEEEcCCcH
Confidence 4899999999999999 58999999876443
No 32
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.13 E-value=1.4 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=29.1
Q ss_pred CCCccchHHHHHHHHHHhhCCcEEEEEcCchhH
Q 046355 20 HPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQ 52 (127)
Q Consensus 20 ~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~ 52 (127)
--|.||+.=++.||+.|..+|+.++|++.+.+.
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e 44 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKRGFACLFLTKQDIE 44 (318)
T ss_pred ccCcchhhhHHHHHHHHHhcCceEEEecccchh
Confidence 357899999999999999999999999987543
No 33
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=83.59 E-value=5.4 Score=31.13 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=43.6
Q ss_pred CCCCeEEEEcC--CCccchHHHHHHHHHHhhC--CcEEEEEcCchhHHHhhhccCCCCCCCCCCeeeeecCC
Q 046355 10 PRRPHAVCVPH--PAQGHINPMFQLAKLLHHK--GFHITFVNTEFNQRRLLKSQGPDSLNAVPTFRFETIPD 77 (127)
Q Consensus 10 ~~~~hvv~vP~--p~~GH~~P~l~la~~L~~~--g~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~f~~lpd 77 (127)
.+.+.|+++.- .|.||+-=+..+|..|+.. |+.|++++......- .....+++|+.+|.
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~---------F~~~~gVd~V~LPs 69 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGG---------FPGPAGVDFVKLPS 69 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCC---------CCCcccCceEecCc
Confidence 33457888875 6789999999999999986 999999987533211 11124688999984
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=83.01 E-value=2.7 Score=31.30 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+|+++-.-..||+....+|++.|..+|+.|++++.+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~ 37 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTK 37 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCC
Confidence 477777777899997789999999999999999754
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=82.23 E-value=2.7 Score=31.33 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|++.-.-..||+.-.++|++.|..+|+.|++++..
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~ 36 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTK 36 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECC
Confidence 34444445599999999999999999999999865
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=80.53 E-value=2.4 Score=31.32 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=26.5
Q ss_pred CCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 21 PAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 21 p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|.||+.=++-||+.|..+|+.|+|++..
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~ 40 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKP 40 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899999999999999999999999765
No 37
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.18 E-value=8.8 Score=25.47 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
++++||+...++-+|-.=..-++..|.+.|+.|+++-.......+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 357899999999999999999999999999999998765554444
No 38
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=79.05 E-value=4.3 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=31.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.|+++.....||..-+++|++.|.++|+.|++++.+.
T Consensus 3 ~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred EEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 4677766566999999999999999999999998754
No 39
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.49 E-value=7 Score=24.77 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=33.9
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
+||+...++-.|.....=++..|..+|+.|..+-...+...+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 378888899999999999999999999999887655444333
No 40
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=76.26 E-value=6.2 Score=30.52 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=28.0
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCc-EEEEEcCc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGF-HITFVNTE 49 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~-~VT~v~t~ 49 (127)
|++.-.-.-||+-|.+-|+..|..+|+ .|.++-+.
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~ 38 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTG 38 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCccEEEEeccc
Confidence 555666677999999999999999999 56666544
No 41
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=75.46 E-value=6.7 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.|.++.....|+-.=+..+|+.|+++|+.||+++..
T Consensus 5 ~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEec
Confidence 566666666777777789999999999999999754
No 42
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=75.22 E-value=4 Score=26.60 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 24 GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|=-.-+++|++.|+++|+.||+++..
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 56677899999999999999999755
No 43
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=74.35 E-value=4.1 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCcEEEEEcCc
Q 046355 29 MFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~ 49 (127)
+.+|++.|+++|+.|++++..
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~ 27 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQ 27 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 578999999999999999854
No 44
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=73.10 E-value=6.2 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
|+++.....|+..-+.++++.|.+.|+.|++++....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~ 38 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGD 38 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCC
Confidence 4444444778889999999999999999999986643
No 45
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.81 E-value=14 Score=28.93 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=45.7
Q ss_pred cCCCCCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch--hHHHhhhccCCCCCCCCCCeeeeecCC
Q 046355 6 DTQHPRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF--NQRRLLKSQGPDSLNAVPTFRFETIPD 77 (127)
Q Consensus 6 ~~~~~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~--~~~~~~~~~~~~~~~~~~~i~f~~lpd 77 (127)
......+.+++++-.--.||.-=|--=|..|+..|+.|+++---. +...+ ...++|+++.+|.
T Consensus 6 ~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l---------~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 6 YENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL---------LNHPRIRIHGMPN 70 (444)
T ss_pred cccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH---------hcCCceEEEeCCC
Confidence 334445568888888889999999989999999999999975321 22222 1246899998874
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=72.29 E-value=7.7 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.5
Q ss_pred cCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 19 PHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 19 P~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|....|+-.-..++++.|.++|+.|+++++.
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~ 40 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPS 40 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCC
Confidence 3345689999999999999999999998765
No 47
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=71.70 E-value=17 Score=25.51 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhh
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLK 57 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~ 57 (127)
.+++||+...++-.|-....=++..|-++||+|+++-...+...+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 45789999999999999998888888899999999876655555543
No 48
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=71.04 E-value=16 Score=25.61 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
+++||+...++-.|-....=++..|..+||.|..+-...+...+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~ 126 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 578999999999999999888988999999998876554544443
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.90 E-value=7 Score=29.07 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.3
Q ss_pred EEEEcCC-CccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 15 AVCVPHP-AQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 15 vv~vP~p-~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|+++.+| .-|.-.-+.+||+.|.++|+.|++++..
T Consensus 3 i~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~ 38 (371)
T cd04962 3 IGIVCYPTYGGSGVVATELGKALARRGHEVHFITSS 38 (371)
T ss_pred eeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecC
Confidence 4444454 3467788999999999999999999865
No 50
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=67.48 E-value=12 Score=28.17 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred EEEcCCCccc-hHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 16 VCVPHPAQGH-INPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 16 v~vP~p~~GH-~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.+.|....|= -.=+.+||+.|+++|+.|+++++.
T Consensus 5 ~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 5 FIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred EECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 3445544443 345589999999999999999864
No 51
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=66.96 E-value=3.9 Score=27.36 Aligned_cols=17 Identities=41% Similarity=0.755 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHh
Q 046355 21 PAQGHINPMFQLAKLLH 37 (127)
Q Consensus 21 p~~GH~~P~l~la~~L~ 37 (127)
|-+|-.||+|||+-+|+
T Consensus 57 pe~G~tNPFLHlsmHLs 73 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLS 73 (137)
T ss_pred cccCccchhHHHHHHHH
Confidence 67899999999998885
No 52
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=66.03 E-value=12 Score=27.22 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.1
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
..|...-..+|++.|.+.|+.|+++++.
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 40 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTD 40 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecC
Confidence 4589999999999999999999998865
No 53
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=65.32 E-value=13 Score=23.75 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=24.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
|+++.--..+| ..++++.|..+|++|++++....
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~ 35 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRND 35 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCC
Confidence 44555544556 46789999999999999998533
No 54
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=65.19 E-value=13 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=27.8
Q ss_pred CeEEEEcCC-CccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 13 PHAVCVPHP-AQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 13 ~hvv~vP~p-~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
++|+++..- |.||..+...|+..|..+|..+.++.
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~ 40 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVC 40 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 357766664 55999999999999999998766654
No 55
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=64.49 E-value=10 Score=29.33 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=30.8
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|.|++.---..||+.|. .|++.|..+|..++|+...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~g 41 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVA 41 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEc
Confidence 57887777788999999 9999999988888887654
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=64.48 E-value=7.8 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCcEEEEEcCc
Q 046355 28 PMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 28 P~l~la~~L~~~g~~VT~v~t~ 49 (127)
++-+||+.|+++|+.|++++..
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~ 33 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEP 33 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecC
Confidence 3678999999999999999754
No 57
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=63.69 E-value=30 Score=24.74 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
.+++||+...++-.|-+-..=++..|..+||.|..+-...+...+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v 132 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKIL 132 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 4578999999999999999888888889999999987665555443
No 58
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.42 E-value=15 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
-|+...+.+|++.|..+|+.|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999987643
No 59
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=62.45 E-value=10 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 24 GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|+..|-++|..|.++|+.|+++...
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47889999999999999999999876
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=61.31 E-value=21 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=26.5
Q ss_pred EEcCCC--ccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 17 CVPHPA--QGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 17 ~vP~p~--~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
+++... .|...-+.++++.|.++|+.|++++....
T Consensus 5 ~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 5 VIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred EeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 344444 45667788999999999999999987543
No 61
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=60.09 E-value=7.9 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.1
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|.-..+.+|++.|+.+|+.|+++++.
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~ 47 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRR 47 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEec
Confidence 478889999999999999999999864
No 62
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.52 E-value=18 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=24.1
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
.-|+-.-...|++.|.++|+.|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999987
No 63
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=58.26 E-value=11 Score=27.37 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=25.1
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.|+-.-+.++++.|+++|+.|++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~ 41 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSP 41 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCC
Confidence 5899999999999999999999998653
No 64
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=58.05 E-value=22 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEE
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v 46 (127)
-+|++---...|..=.-+||+.|+.+|+.|-..
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 455555555689999999999999999876543
No 65
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.22 E-value=38 Score=21.67 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=34.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
+||+...++-.|-.-..=++..|...||.|..+-.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 478888899999999988888888999999998765554443
No 66
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=57.13 E-value=22 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.|+-.-..+|++.|..+|+.|+++++..
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 42 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGE 42 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCC
Confidence 5788889999999999999999998653
No 67
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=55.88 E-value=18 Score=26.52 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=23.9
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
..|+-....+|++.|..+|+.|++++.
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~ 37 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISL 37 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEE
Confidence 357899999999999999999999864
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=55.52 E-value=26 Score=25.02 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 21 PAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 21 p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+..|+..-+.++++.|.+.|+.|++++..
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~ 38 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLR 38 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcC
Confidence 36788899999999999999999998765
No 69
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.47 E-value=39 Score=21.03 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
++++...+..-|-.-+.-++..|..+|++|.++-....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 57888889999999999999999999999999855433
No 70
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=50.31 E-value=50 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCeEEEEc----CCC-ccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 12 RPHAVCVP----HPA-QGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 12 ~~hvv~vP----~p~-~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
+-+|+++- ++. -|=-+=+.+|++.|..+|+.|+++++..
T Consensus 58 ~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 58 PRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34788772 222 2333567899999999999999998753
No 71
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.79 E-value=34 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.0
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.-|.-.-..++++.|..+|+.|+++++..
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 41 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASP 41 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 45788888999999999999999998753
No 72
>PRK10307 putative glycosyl transferase; Provisional
Probab=48.68 E-value=21 Score=27.42 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCc
Q 046355 29 MFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~ 49 (127)
+.+|++.|.++|+.|++++.+
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 569999999999999999975
No 73
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=48.63 E-value=26 Score=20.33 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhCCcEEEEEcCc
Q 046355 28 PMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 28 P~l~la~~L~~~g~~VT~v~t~ 49 (127)
--+++|..|+..|..||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 3478999999999999998753
No 74
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.43 E-value=35 Score=23.91 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
++++=-.|.|-.+-...||.++..+|.+|.++++.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 34445568899999999999999889999999876
No 75
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=48.38 E-value=59 Score=20.92 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=28.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
+|++.=.-+. ...-..++.++|.+.|+.|.++.|+...+.+
T Consensus 2 ~i~l~vtGs~-~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSI-AAYKAPDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSG-GGGGHHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHH-HHHHHHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 3444444333 3333889999999999999999998665443
No 76
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=47.52 E-value=21 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.2
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
..|--.=..+||+.|.++|+.|+++++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~ 46 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRA 46 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecc
Confidence 3566678899999999999999999865
No 77
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.51 E-value=46 Score=22.25 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEEcCCCc-cchHHHHHHHHHHhhCCcEEEEEcCchhHHH
Q 046355 15 AVCVPHPAQ-GHINPMFQLAKLLHHKGFHITFVNTEFNQRR 54 (127)
Q Consensus 15 vv~vP~p~~-GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~ 54 (127)
+|++=+|-. --+...+-++.+|-.+||.||+..++...+.
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kL 46 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKL 46 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhhee
Confidence 555555544 3566778899999999999999998865543
No 78
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=47.26 E-value=24 Score=26.90 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=26.6
Q ss_pred cCCCCCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 6 DTQHPRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 6 ~~~~~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
+++.+.+||+.- +.||+.+++.| +.|+.||++....
T Consensus 40 GtaptGrpHiay--------~vpm~kiadfl-kAGC~VtIl~AD~ 75 (360)
T KOG2144|consen 40 GTAPTGRPHIAY--------FVPMMKIADFL-KAGCEVTILFADL 75 (360)
T ss_pred cCCCCCCcceee--------eeehhHHHHHH-hcCCeEEEEehHH
Confidence 355666778742 57999998766 5699999987763
No 79
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=45.21 E-value=23 Score=21.56 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 29 MFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
++++|++|.+.|| .++.|....+.+.
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~ 27 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLK 27 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHH
Confidence 5789999999996 5677776666554
No 80
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.78 E-value=27 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.||+.|++.|. +|...|+.++++...
T Consensus 48 lGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 48 LGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred hhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 49999999875 788889999998765
No 81
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=44.68 E-value=69 Score=20.38 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=32.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
||++.--++.|-..-...+++.|+.+|.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4677788899999999999999999999998887764
No 82
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=44.24 E-value=32 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhCCcEEEEEcCc
Q 046355 27 NPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 27 ~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.|.+++++.|..+|+.|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 58999999999999998886543
No 83
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.78 E-value=61 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
-++++--+|.|-.+-...||..|+..|.+|.++.+..
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4666777899999999999999999999999998763
No 84
>PTZ00445 p36-lilke protein; Provisional
Probab=43.65 E-value=26 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=22.6
Q ss_pred ccchHH-HHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINP-MFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P-~l~la~~L~~~g~~VT~v~t~ 49 (127)
.+|..| +..+.++|...|+.|+++|-.
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 357777 788999999999999999854
No 85
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=43.61 E-value=67 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|+++-.|.+---.=++.|||+|...|+.|-++...
T Consensus 110 iVaFvgSpi~esedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 110 IVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred EEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehh
Confidence 578888999988899999999999999999887643
No 86
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=41.10 E-value=52 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|+..-+.+|++.|...|+.|++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~ 40 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPG 40 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecC
Confidence 689999999999999999999998865
No 87
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.79 E-value=80 Score=21.05 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
+++.=.||.|-..-...+++.++..|.+|.++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455667899999999999999999999999988763
No 88
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.35 E-value=35 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 16 VCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 16 v~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
-++.-+..|.+-- .||+.+..+|..||++..+.
T Consensus 21 R~ItN~SSG~~G~--~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 21 RFITNRSSGKMGA--ALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEEES--SHHHH--HHHHHHHHTT-EEEEEE-TT
T ss_pred eEecCCCcCHHHH--HHHHHHHHCCCEEEEEecCc
Confidence 3444455565543 46888999999999998774
No 89
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.65 E-value=84 Score=22.99 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=35.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHhhhcc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRLLKSQ 59 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~~~~~ 59 (127)
-++++=-||.|-.-=..-+|..|+.+|++|+|++++.-...+..+.
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 5777777888855556667999998899999999987766665443
No 90
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=39.26 E-value=82 Score=18.53 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.5
Q ss_pred eEEEEcCCCc--cchHHHHHHHHHHhhCCcEEEEEc
Q 046355 14 HAVCVPHPAQ--GHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 14 hvv~vP~p~~--GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
.|+++|.... ....-.++++..|-..|+.|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5888887643 456667888888888899988744
No 91
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=39.00 E-value=65 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 20 HPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 20 ~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+..-|.-..+.+|++.|...|+.+.++...
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~ 38 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLT 38 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecC
Confidence 344689999999999999999999988754
No 92
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.44 E-value=49 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHhhCCcEEEEEcC
Q 046355 30 FQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 30 l~la~~L~~~g~~VT~v~t 48 (127)
+-.|..|..+|++|+++=.
T Consensus 9 l~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHCCCcEEEEec
Confidence 4568888889999999853
No 93
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.10 E-value=61 Score=23.76 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 24 GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|=-.=..+|++.|..+|+.|++++..
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~ 41 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRS 41 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 33456679999999999999999865
No 94
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=76 Score=25.54 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+..|+|+++.-|+--=-.=.+ .||+|+.+|+.+++....
T Consensus 264 ~~~P~V~Ilcgpgnnggdg~v-~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNNGGDGLV-CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCCceEEEEeCCCCccchhHH-HHHHHHHcCceeEEEeec
Confidence 345789999988641111122 899999999988886543
No 95
>PRK13604 luxD acyl transferase; Provisional
Probab=37.65 E-value=1e+02 Score=23.52 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=22.8
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEE
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v 46 (127)
+.|+++...+. +-.-+..+|+.|+++|+.|-..
T Consensus 38 ~~vIi~HGf~~-~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFAR-RMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCC-ChHHHHHHHHHHHHCCCEEEEe
Confidence 44555444443 4455999999999999876554
No 96
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=36.97 E-value=51 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
.|++.---..||+.|.+ +++.|.+++..+.++.
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~ 35 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVG 35 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEE
Confidence 46666666779999999 9999988765555554
No 97
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=36.10 E-value=67 Score=23.01 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.4
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
..|+-.=+.++++.|...|+.|++++...
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~ 41 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGP 41 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 46888889999999999999999998653
No 98
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.44 E-value=93 Score=24.90 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=32.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
-|+++-.+|.|-.+-...||..|..+|+.|.++.++.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 5667777899999999999999999999999988763
No 99
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=35.28 E-value=1.1e+02 Score=22.45 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.8
Q ss_pred eEEEEcCC-CccchHHHHHHHHHHhhCCcEEEEEcCchhHH
Q 046355 14 HAVCVPHP-AQGHINPMFQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 14 hvv~vP~p-~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
-|.++.+- |.|-.+-.+-||..|+++|-+|+++=++.|.+
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 35555554 56999999999999999999999998876654
No 100
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=35.13 E-value=1e+02 Score=18.97 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.7
Q ss_pred EEEcCCCccchHHHHHHHHHHhhC-CcEEEEEc
Q 046355 16 VCVPHPAQGHINPMFQLAKLLHHK-GFHITFVN 47 (127)
Q Consensus 16 v~vP~p~~GH~~P~l~la~~L~~~-g~~VT~v~ 47 (127)
+++|.-+..+...+++.|..|+.. +..++++.
T Consensus 2 ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~ 34 (132)
T cd01988 2 ILVPVANPNTARDLLELAAALARAQNGEIIPLN 34 (132)
T ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 568888888888999999999974 57777754
No 101
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=34.92 E-value=7.7 Score=19.68 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.4
Q ss_pred cCCCccchHHHHHHH
Q 046355 19 PHPAQGHINPMFQLA 33 (127)
Q Consensus 19 P~p~~GH~~P~l~la 33 (127)
.||+||-+||-+++-
T Consensus 17 TFPGqGP~NPKir~P 31 (39)
T PF08026_consen 17 TFPGQGPFNPKIRWP 31 (39)
T ss_pred cCCCCCCCCcccccc
Confidence 478999998876653
No 102
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.67 E-value=41 Score=20.16 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 29 MFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
++++++.|.+.|+.+ +.|+.....+
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L 26 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFL 26 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 468899999999876 4555444433
No 103
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=34.15 E-value=1.1e+02 Score=22.71 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.2
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCC--cEEEEEc
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKG--FHITFVN 47 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g--~~VT~v~ 47 (127)
|-||+.=+|..|..+=..+|...|.++| ..|+++.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 5689999999999999999999999998 3566654
No 104
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=34.06 E-value=46 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|--.=+.+|++.|+.+|++|+++++.
T Consensus 14 GG~e~~~~~la~~L~~~G~~V~v~~~~ 40 (398)
T cd03796 14 GGVETHIYQLSQCLIKRGHKVVVITHA 40 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCeeEEEecc
Confidence 355567889999999999999999864
No 105
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=33.09 E-value=77 Score=20.91 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
..+..+-+.|.-|.+.+.|.-++.++|.+....+.+++|...
T Consensus 44 ~g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 44 YGKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred CCceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 345678899999999999999999999998899999988643
No 106
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=32.94 E-value=87 Score=22.22 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=28.1
Q ss_pred eEEEEcCCCccchHH-HHHHHHHHhhCCcEEEEEcCchhH
Q 046355 14 HAVCVPHPAQGHINP-MFQLAKLLHHKGFHITFVNTEFNQ 52 (127)
Q Consensus 14 hvv~vP~p~~GH~~P-~l~la~~L~~~g~~VT~v~t~~~~ 52 (127)
+|+ +-.-|.....- ..+|.++|...|+.|.++.|+...
T Consensus 7 ~Il-lgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIG-FGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEE-EEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 444 33444555666 689999999999999999988554
No 107
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=32.89 E-value=1.7e+02 Score=23.38 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCc-cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 10 PRRPHAVCVPHPAQ-GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 10 ~~~~hvv~vP~p~~-GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
...|.||++|--+- +|-.=+.+|+.++..+|+.+-+++..
T Consensus 123 ~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 123 GTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCC
Confidence 45689999998544 68878889999999999999998753
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.62 E-value=90 Score=21.08 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
..+|.|++.+.---||=.=.--+++.|.+.||.|....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g 47 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG 47 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC
Confidence 35789999998877999988889999999999987743
No 109
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.32 E-value=55 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCcEEEEEc
Q 046355 29 MFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~ 47 (127)
.++.|++|+.+|+.|+.+-
T Consensus 25 ~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 25 FLDVAKRLAERGFDVLATD 43 (129)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 5788999999998877653
No 110
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=31.63 E-value=92 Score=22.75 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=28.1
Q ss_pred EEEEc-CCC-ccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 15 AVCVP-HPA-QGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 15 vv~vP-~p~-~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
|+++. +.. .|+-.=...+++.|.++|+.|++++...
T Consensus 3 Il~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~ 40 (365)
T cd03825 3 VLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEK 40 (365)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeec
Confidence 44443 334 5888999999999999999999987653
No 111
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=31.62 E-value=59 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred cCCCc-cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 19 PHPAQ-GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 19 P~p~~-GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|.-.. |--.-..+||+.|..+|+.|++++..
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~ 36 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAG 36 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 44433 44467889999999999999998764
No 112
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=31.60 E-value=35 Score=21.69 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=21.9
Q ss_pred cCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 19 PHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 19 P~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
-+||+|+++=-.+|++++...|+ +|+-+
T Consensus 78 i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 47999999999999999988764 55544
No 113
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=31.53 E-value=1.1e+02 Score=22.84 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=25.3
Q ss_pred eEEEEcC--CCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCVPH--PAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~vP~--p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
||++|-. -|.|-.+-.++||-.|+..|++|-++=..
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~D 38 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLD 38 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4444444 46799999999999999999999997554
No 114
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.19 E-value=1.1e+02 Score=20.62 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCcEEEEEcCchhHHHhh
Q 046355 27 NPMFQLAKLLHHKGFHITFVNTEFNQRRLL 56 (127)
Q Consensus 27 ~P~l~la~~L~~~g~~VT~v~t~~~~~~~~ 56 (127)
.-.+-|+.+|-.+|++|++..++.....+.
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 446788999999999999999987665443
No 115
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=30.93 E-value=62 Score=21.99 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCccch-HHHHHHHHHHhhCCcEEEEEc
Q 046355 11 RRPHAVCVPHPAQGHI-NPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~-~P~l~la~~L~~~g~~VT~v~ 47 (127)
..+.|+++--++. - -=-+-+||+|..+|+.|+++.
T Consensus 24 ~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEE
Confidence 3457777776643 2 234668999999999999944
No 116
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.62 E-value=1.5e+02 Score=20.77 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=29.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
-|+++-.++.-|--=+.+.+++|...|++|.++.-
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 48888888888877788999999999999888754
No 117
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.55 E-value=1.1e+02 Score=17.61 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
.|+++++ ..+...-.+.+++.|-..|+.|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5666765 467788889999999889999888443
No 118
>PRK15043 transcriptional regulator MirA; Provisional
Probab=30.55 E-value=1.4e+02 Score=22.01 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=27.7
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
..++++.++...- .-..=-|.+|.+.|++|+++..+.
T Consensus 163 ~~~Ll~~~~~~~~-~~lwl~a~~l~~~g~~v~vl~~~~ 199 (243)
T PRK15043 163 KDALVVGWNIHDT-TRLWLEGWIASQQGWRIDVLAHSL 199 (243)
T ss_pred CCEEEEeCCCCCc-HHHHHHHHHHhcCCceEEEeCCcc
Confidence 4699999998883 333334777888999999997653
No 119
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.34 E-value=1.4e+02 Score=18.48 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=30.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHH
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
++..-.++-.|..-..-++..|...|+.+.++.......
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 566677788899999999999999999999886544433
No 120
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.11 E-value=1.2e+02 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEE
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITF 45 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~ 45 (127)
.+..|.+=..||.|-.--||+=|+.+..+|.+|-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVVi 38 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVI 38 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34578888889999999999999999999988877
No 121
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=29.98 E-value=82 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.6
Q ss_pred EEcC-CCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 17 CVPH-PAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 17 ~vP~-p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+.++ ..-|.-.-+.++++.|..+|+.|++++..
T Consensus 5 ~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~ 38 (358)
T cd03812 5 IVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTS 38 (358)
T ss_pred EeCCCCCccHHHHHHHHHHhcCccceEEEEEEeC
Confidence 4444 45578888999999999899999998864
No 122
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=29.89 E-value=29 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHhhCCcEEEEEcCchhHH
Q 046355 30 FQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 30 l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
-+|...|..+|+.||=.|......
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiSRDLk 46 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATISRDLK 46 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHHHH
Confidence 378889999999877655444433
No 123
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.86 E-value=89 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 29 MFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
..+|.++|...|..|.++.|+...+.+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 368899999999999999998655443
No 124
>PRK09620 hypothetical protein; Provisional
Probab=29.67 E-value=61 Score=23.39 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=23.2
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
|-.+.-...|-+- .+||+.|..+|+.|+++..
T Consensus 20 VR~itN~SSGfiG--s~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 20 VRGHTNMAKGTIG--RIIAEELISKGAHVIYLHG 51 (229)
T ss_pred eeEecCCCcCHHH--HHHHHHHHHCCCeEEEEeC
Confidence 3444555566666 4679999999999998864
No 125
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=28.78 E-value=96 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 25 HINPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 25 H~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
.+-++++|.+.|.++|+.|-+++....
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 355899999999999999999987643
No 126
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=28.53 E-value=3.3e+02 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHhhCC--cEEEEEcCc
Q 046355 24 GHINPMFQLAKLLHHKG--FHITFVNTE 49 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g--~~VT~v~t~ 49 (127)
|+..=.++||+.|+++| .+|.++|-.
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~ 223 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQ 223 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 57777899999999997 799999854
No 127
>PRK10985 putative hydrolase; Provisional
Probab=28.38 E-value=1.6e+02 Score=21.88 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCccchHHH-HHHHHHHhhCCcEEEEEc
Q 046355 11 RRPHAVCVPHPAQGHINPM-FQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~-l~la~~L~~~g~~VT~v~ 47 (127)
.++-|++++-.+.++-... ..+++.|+++|+.|-.+.
T Consensus 57 ~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d 94 (324)
T PRK10985 57 HKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMH 94 (324)
T ss_pred CCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEe
Confidence 3567888886654433334 458999999999877654
No 128
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=27.97 E-value=1.2e+02 Score=17.16 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=26.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
+++.-..+.|-..-...+|..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344555688899999999999999999887765
No 129
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=27.75 E-value=1e+02 Score=22.71 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=27.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhH
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQ 52 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~ 52 (127)
+++++. -+.| +.|++.+++.|+.++..|+++....+.
T Consensus 100 ~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 100 TVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred eEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 676665 3344 889999999999888889988665443
No 130
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.63 E-value=98 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhh
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHH 38 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~ 38 (127)
.+-||+++-=.||-|..+..+-||+.|.-
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34589999999999999999999999975
No 131
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=27.58 E-value=1.9e+02 Score=20.81 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=32.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhC-CcEEEEEcCchh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHK-GFHITFVNTEFN 51 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~-g~~VT~v~t~~~ 51 (127)
-+++.--|+.|-..-+++++..++.. |..|-+++....
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 56677778999999999999999876 999999987644
No 132
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=27.46 E-value=1e+02 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 24 GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|--.-..+|++.|..+|+.|++++..
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~ 45 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASG 45 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecC
Confidence 55577889999999999999999854
No 133
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=27.35 E-value=1.5e+02 Score=21.56 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
++++++| |.||+.-. |++.....||+||++-..
T Consensus 100 ~~~L~If---GaG~va~~--la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 100 APHVVLF---GAGHVGRA--LVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCEEEEE---CCcHHHHH--HHHHHhcCCCEEEEEeCC
Confidence 3455554 67898433 355555669999998644
No 134
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=27.21 E-value=1.8e+02 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=27.9
Q ss_pred CeEEEE-cC-CCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 13 PHAVCV-PH-PAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 13 ~hvv~v-P~-p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
+.|+.| -+ .|.|-.+-.++||..|+.+|++|-+|=
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 445433 33 577999999999999999999988874
No 135
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=26.97 E-value=62 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCCcEEEEEcCch
Q 046355 28 PMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 28 P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
=+-.|++.|+++|..|+++++..
T Consensus 21 ~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 21 VVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHCCCeEEEEecCC
Confidence 34568999999999999998653
No 136
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=26.81 E-value=58 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCCcEEEEEcCch
Q 046355 27 NPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 27 ~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.=.-.|++.|+.+|..|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 344578999999999999998754
No 137
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=26.80 E-value=74 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=24.0
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
|-++.-.+.|-+-- +||+.|+.+|+.|+++..
T Consensus 17 VR~itN~SSG~iG~--aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 17 VRGITNHSTGQLGK--IIAETFLAAGHEVTLVTT 48 (229)
T ss_pred ceeecCccchHHHH--HHHHHHHhCCCEEEEEEC
Confidence 66666677765543 568889999999999864
No 138
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=26.73 E-value=1.6e+02 Score=21.24 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+.-|+||=.||.|-..=.-+|++.|-..|+...+++..
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g 49 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVG 49 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecc
Confidence 45799999999999988899999999999999998865
No 139
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=26.60 E-value=67 Score=23.12 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCCcEEEEEcCch
Q 046355 28 PMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 28 P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
++++|.+.+.++|+.|-|++...
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCC
Confidence 38999999999999999998653
No 140
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=26.44 E-value=38 Score=24.80 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHhhC
Q 046355 23 QGHINPMFQLAKLLHHK 39 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~ 39 (127)
-||+||.+-+|..+..+
T Consensus 67 GaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 67 GAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccCHHHHHHHHHhCC
Confidence 48999999999888766
No 141
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.36 E-value=1.2e+02 Score=21.59 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
..+|++|.+.+....|+.-+-++.++|...|..+.++...
T Consensus 137 ~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 137 EHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred HcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4468999999999999999999999999888888876654
No 142
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.20 E-value=1.1e+02 Score=19.85 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=25.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhC-CcEEEE
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHK-GFHITF 45 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~-g~~VT~ 45 (127)
++.++.-..-|..=+++||..|.+. |+.|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 3445555678999999999999998 998887
No 143
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.77 E-value=1.5e+02 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=32.0
Q ss_pred Ce-EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCch
Q 046355 13 PH-AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 13 ~h-vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
|. |+++=.+|.|-.+-...||..|..+|.+|-++.+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 44 555566799999999999999999999999998864
No 144
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.65 E-value=1e+02 Score=22.74 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=32.1
Q ss_pred eEEEEcCC----CccchHHHHHHHHHHhhCCcEEEEEcCchhHH
Q 046355 14 HAVCVPHP----AQGHINPMFQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 14 hvv~vP~p----~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
.++++-=| -..|..-.+++|+.|++.|..|-.|.-+.|..
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA 204 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA 204 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH
Confidence 46665444 34799999999999999999999988887764
No 145
>PLN02275 transferase, transferring glycosyl groups
Probab=25.55 E-value=1.6e+02 Score=22.35 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCccchHHHHHHHHHHhhCC-cEEEEEcC
Q 046355 10 PRRPHAVCVPHPAQGHINPMFQLAKLLHHKG-FHITFVNT 48 (127)
Q Consensus 10 ~~~~hvv~vP~p~~GH~~P~l~la~~L~~~g-~~VT~v~t 48 (127)
..+.||+++ +-.|.---|..++..|+.+| +.||++..
T Consensus 4 ~~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~ 41 (371)
T PLN02275 4 RGRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAY 41 (371)
T ss_pred ccEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEe
Confidence 344566666 66777788889999999986 68999864
No 146
>PRK05802 hypothetical protein; Provisional
Probab=25.54 E-value=1e+02 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=27.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhH
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQ 52 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~ 52 (127)
++|++. -|.| +.|++.+++.|.++|..|+++....+.
T Consensus 174 ~~llIa-GGiG-IaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 174 KSLVIA-RGIG-QAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred eEEEEE-eEEe-HHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 566554 3334 899999999999988889988655443
No 147
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=25.44 E-value=1.3e+02 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhCCcEEEEEcCchh
Q 046355 26 INPMFQLAKLLHHKGFHITFVNTEFN 51 (127)
Q Consensus 26 ~~P~l~la~~L~~~g~~VT~v~t~~~ 51 (127)
+-++++|.+.|.++|+.|-++|....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 35789999999999999999987644
No 148
>PHA02518 ParA-like protein; Provisional
Probab=25.40 E-value=1.1e+02 Score=20.78 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 21 PAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 21 p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-|.|-.+-.+.||..|+++|.+|.++=..
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46799999999999999999999988554
No 149
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.30 E-value=1.7e+02 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=31.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHh-hCCcEEEEEcCch
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLH-HKGFHITFVNTEF 50 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~-~~g~~VT~v~t~~ 50 (127)
-++++-.+|.|-.+-...||..|. .+|.+|.++.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 456667789999999999999987 5799999998763
No 150
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=25.10 E-value=1.4e+02 Score=17.92 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhh--CCcEEEEEcCchh
Q 046355 26 INPMFQLAKLLHH--KGFHITFVNTEFN 51 (127)
Q Consensus 26 ~~P~l~la~~L~~--~g~~VT~v~t~~~ 51 (127)
+.||+.+.+.+.. .+-+|+++-...+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~ 35 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGART 35 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcc
Confidence 6899999999995 4678998765433
No 151
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=25.06 E-value=81 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhCCc--EEEEEcCc
Q 046355 26 INPMFQLAKLLHHKGF--HITFVNTE 49 (127)
Q Consensus 26 ~~P~l~la~~L~~~g~--~VT~v~t~ 49 (127)
-.=+.+||+.|+.+|. .|+++|..
T Consensus 29 ~~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 29 TKYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred chHHHHHHHHHHhCCCCcEEEEEecc
Confidence 3557899999999985 89999854
No 152
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=24.76 E-value=1.4e+02 Score=22.38 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.5
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEE
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITF 45 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~ 45 (127)
.--|+||-.|.| +||..++.+|+.++=
T Consensus 57 ~~~VLVPGsGLG------RLa~Eia~~G~~~~g 83 (270)
T PF07942_consen 57 KIRVLVPGSGLG------RLAWEIAKLGYAVQG 83 (270)
T ss_pred ccEEEEcCCCcc------hHHHHHhhccceEEE
Confidence 345779999999 889999999998765
No 153
>PRK10867 signal recognition particle protein; Provisional
Probab=24.42 E-value=1.6e+02 Score=23.64 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCe-EEEEcCCCccchHHHHHHHHHHhhC-CcEEEEEcCch
Q 046355 12 RPH-AVCVPHPAQGHINPMFQLAKLLHHK-GFHITFVNTEF 50 (127)
Q Consensus 12 ~~h-vv~vP~p~~GH~~P~l~la~~L~~~-g~~VT~v~t~~ 50 (127)
+|. |+++-.+|.|-.+-...||..|..+ |.+|.++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 354 4555667889999999999999998 99999998763
No 154
>PRK10116 universal stress protein UspC; Provisional
Probab=24.36 E-value=1.8e+02 Score=18.27 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=23.9
Q ss_pred EEEcCCCccchHHHHHHHHHHhhC-CcEEEEEc
Q 046355 16 VCVPHPAQGHINPMFQLAKLLHHK-GFHITFVN 47 (127)
Q Consensus 16 v~vP~p~~GH~~P~l~la~~L~~~-g~~VT~v~ 47 (127)
++++.-+..+-.+.++.|..|+.. |..++++.
T Consensus 6 ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~ 38 (142)
T PRK10116 6 ILVAVAVTPESQQLLAKAVSIARPVNGKISLIT 38 (142)
T ss_pred EEEEccCCcchHHHHHHHHHHHHHhCCEEEEEE
Confidence 345665666778999999999974 77888764
No 155
>PRK14974 cell division protein FtsY; Provisional
Probab=24.12 E-value=2.6e+02 Score=21.50 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=31.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-++++=.+|.|-.+-.-.||..|..+|.+|.++++.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 566777789999999999999999999999998765
No 156
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=24.00 E-value=1e+02 Score=21.75 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=27.8
Q ss_pred eEEEEcCCCccch-HHHHHHHHHHhhCCcEEEEE
Q 046355 14 HAVCVPHPAQGHI-NPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 14 hvv~vP~p~~GH~-~P~l~la~~L~~~g~~VT~v 46 (127)
-+++-|.|+.=|+ -|.-+++..|-..|..+..+
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~l 68 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVL 68 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceE
Confidence 4667788999999 79999999999999776654
No 157
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=23.75 E-value=22 Score=19.11 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=7.1
Q ss_pred CCCccchHH
Q 046355 20 HPAQGHINP 28 (127)
Q Consensus 20 ~p~~GH~~P 28 (127)
|||-||+-|
T Consensus 35 ~PGn~hlQP 43 (45)
T PF08384_consen 35 FPGNGHLQP 43 (45)
T ss_pred cCCCcccCC
Confidence 588999866
No 158
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=23.68 E-value=1.3e+02 Score=21.87 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.|-..=|.+||+.|.++|.+|-+.||-
T Consensus 8 gGKTtl~~~l~~~~~~~g~~v~~TTTT 34 (232)
T TIGR03172 8 GGKTSTMFWLAAEYRKEGYRVLVTTTT 34 (232)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEECCc
Confidence 588899999999999999999887764
No 159
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=23.46 E-value=86 Score=23.65 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred cCCCccch-HHHHHHHHHHhhCCcEEEEEcC
Q 046355 19 PHPAQGHI-NPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 19 P~p~~GH~-~P~l~la~~L~~~g~~VT~v~t 48 (127)
-|-+.|++ .|| |++|.+.|+.|++.+-
T Consensus 4 afIGLG~MG~pm---A~~L~~aG~~v~v~~r 31 (286)
T COG2084 4 AFIGLGIMGSPM---AANLLKAGHEVTVYNR 31 (286)
T ss_pred EEEcCchhhHHH---HHHHHHCCCEEEEEeC
Confidence 34566777 555 8999999999999764
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=23.02 E-value=1.8e+02 Score=17.39 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.6
Q ss_pred CeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 13 PHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 13 ~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.+++++-.||-|...-+..+|+.+...+..+-++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 5788999999999999999999988776455555544
No 161
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.96 E-value=2.1e+02 Score=19.85 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=26.9
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHH
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
+|++.=.-+.| ..-..++.+.|.+.|+.|.++.|+...+
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 34444333333 3447899999999999999999885543
No 162
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.95 E-value=1.8e+02 Score=20.13 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=24.2
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCchhHH
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTEFNQR 53 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~ 53 (127)
|.....-..++.+.|.+.|++|.++.|+...+
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 34445566789999998999999998885543
No 163
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=22.74 E-value=2.4e+02 Score=20.47 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
+++.||+++-.+.+.- -.-.++..|.++|++|..+-
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~d 52 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCID 52 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEec
Confidence 3578999998766433 34556777888888877653
No 164
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.68 E-value=2.5e+02 Score=19.33 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEE
Q 046355 11 RRPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 11 ~~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v 46 (127)
+.+-||+++ -..|-..-+.++|.+|+++|+.|-+.
T Consensus 13 ~~~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 13 PRPAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp SEEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEec
Confidence 345566664 56677778889999999999766553
No 165
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.46 E-value=2e+02 Score=19.07 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.1
Q ss_pred cCCCccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 19 PHPAQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 19 P~p~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+-+|.|-.+-.+.||..|++.|.+|.++=..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3467899999999999999999999988443
No 166
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.95 E-value=2.7e+02 Score=18.97 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=29.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEE
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v 46 (127)
-|.++-.++.|-....+-+|-+-+.+|.+|-|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466788889999999999999999999998883
No 167
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=21.95 E-value=1e+02 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.||+.|++.+ ++|...|+.+.++...
T Consensus 46 lGh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 4999997665 6788889999887654
No 168
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=21.92 E-value=93 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 24 GHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 24 GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
||+.| +...+.|...|+.+.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 6777788877888877554
No 169
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=21.85 E-value=2.6e+02 Score=18.68 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=26.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
+.++=+.+.|-..=+..|.++|..+|++|.++-
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345666788988888899999988999998875
No 170
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.63 E-value=77 Score=24.21 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=24.6
Q ss_pred EcCCCc-cchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 18 VPHPAQ-GHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 18 vP~p~~-GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
+|||.- |.-+=+.++.+.|+.+ +.||+++-.
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~ 39 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFV 39 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeC
Confidence 678754 8888899999999775 688887643
No 171
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.53 E-value=98 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCcEEEEEc
Q 046355 30 FQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 30 l~la~~L~~~g~~VT~v~ 47 (127)
.++|++|+.+|+.+.++.
T Consensus 20 ~~~A~~lA~~g~~liLva 37 (265)
T COG0300 20 AELAKQLARRGYNLILVA 37 (265)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 578999999999988875
No 172
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.50 E-value=1.7e+02 Score=16.48 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcC
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNT 48 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t 48 (127)
.|+++++. .....-.++++..|-..|+.|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46667654 56778899999999999998877544
No 173
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.47 E-value=2.9e+02 Score=19.53 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCccchHHHHHHHHHHhhCCcEEEEE
Q 046355 12 RPHAVCVPHPAQGHINPMFQLAKLLHHKGFHITFV 46 (127)
Q Consensus 12 ~~hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v 46 (127)
+--|.++--.+.|-....+-+|-+.+.+|.+|.++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34788899999999999999999999999998876
No 174
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=21.41 E-value=1.3e+02 Score=19.84 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=17.0
Q ss_pred CccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 22 AQGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 22 ~~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
|.||+.-. |++.....||+||++-..
T Consensus 5 GaG~va~a--l~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 5 GAGHVARA--LARLAALLGFRVTVVDPR 30 (136)
T ss_dssp S-STCHHH--HHHHHHHCTEEEEEEES-
T ss_pred eCcHHHHH--HHHHHHhCCCEEEEEcCC
Confidence 66887433 355555669999999765
No 175
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=21.26 E-value=2.2e+02 Score=20.64 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 26 INPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 26 ~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
-.-+.++++.|.++|+.|++++..
T Consensus 14 ~~~~~~~~~~L~~~g~~v~v~~~~ 37 (355)
T cd03799 14 ETFILREILALEAAGHEVEIFSLR 37 (355)
T ss_pred hHHHHHHHHHHHhCCCeEEEEEec
Confidence 355788899999999999998754
No 176
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=20.91 E-value=58 Score=23.03 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHhhC
Q 046355 24 GHINPMFQLAKLLHHK 39 (127)
Q Consensus 24 GH~~P~l~la~~L~~~ 39 (127)
||+||.+-++..+..+
T Consensus 71 aH~NPaVTla~~l~g~ 86 (227)
T PF00230_consen 71 AHFNPAVTLAFALTGR 86 (227)
T ss_dssp SS-SHHHHHHHHHTTS
T ss_pred cccccchhhheeeeee
Confidence 7999999999888654
No 177
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=20.81 E-value=1.1e+02 Score=21.85 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=21.6
Q ss_pred EEEEcCCCccchHHHHHHHHHHhhCCcEEEEEc
Q 046355 15 AVCVPHPAQGHINPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 15 vv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~ 47 (127)
|-++.-.+.|=+-- .+|+.|+.+|+.|+++.
T Consensus 16 VR~itN~SSGgIG~--AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 16 VRSITNHSTGHLGK--IITETFLSAGHEVTLVT 46 (227)
T ss_pred ceeecCCcccHHHH--HHHHHHHHCCCEEEEEc
Confidence 44555555554443 46899999999999875
No 178
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=20.73 E-value=1.2e+02 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHhhCCcEEEEEcCc
Q 046355 23 QGHINPMFQLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 23 ~GH~~P~l~la~~L~~~g~~VT~v~t~ 49 (127)
.||+.|++ ..++|...|+.+.++...
T Consensus 16 LG~~~~~~-~~~~lq~~g~~~~ilI~D 41 (269)
T cd00805 16 LGHLVPLM-KLRDFQQAGHEVIVLIGD 41 (269)
T ss_pred HHHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 49999986 567777779988887654
No 179
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.65 E-value=2.2e+02 Score=20.28 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=29.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 14 HAVCVPHPAQGHINPMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 14 hvv~vP~p~~GH~~P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
+|++. .-|.....=.+++.+.|...|+.|+++.|....+.+
T Consensus 5 rIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 5 RIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 44433 334445567889999999999999999988665433
No 180
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.56 E-value=1.1e+02 Score=22.38 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=24.1
Q ss_pred CeEEEEcCCCccch-HHHHHHHHHHhhCCcEEEEEc
Q 046355 13 PHAVCVPHPAQGHI-NPMFQLAKLLHHKGFHITFVN 47 (127)
Q Consensus 13 ~hvv~vP~p~~GH~-~P~l~la~~L~~~g~~VT~v~ 47 (127)
..|+++--++- - -=-+-+|++|..+|+.|+++.
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 36777776654 2 123567999999999999986
No 181
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=20.46 E-value=94 Score=19.96 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=13.6
Q ss_pred HHHHHHhhCCcEEEEEcCc
Q 046355 31 QLAKLLHHKGFHITFVNTE 49 (127)
Q Consensus 31 ~la~~L~~~g~~VT~v~t~ 49 (127)
.|...|..+|+.+|-+.+.
T Consensus 15 ~l~~~L~~~g~~~TkLsst 33 (109)
T PF06153_consen 15 DLSDALNENGFRVTKLSST 33 (109)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred HHHHHHHHCCceEEEEecc
Confidence 5678899999999998654
No 182
>PRK04280 arginine repressor; Provisional
Probab=20.43 E-value=77 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.2
Q ss_pred HHHHHHhhCCcEEEEEcCchhHHH
Q 046355 31 QLAKLLHHKGFHITFVNTEFNQRR 54 (127)
Q Consensus 31 ~la~~L~~~g~~VT~v~t~~~~~~ 54 (127)
+|...|..+|+.||=.|.....+.
T Consensus 23 eL~~~L~~~Gi~vTQATiSRDike 46 (148)
T PRK04280 23 ELVDRLREEGFNVTQATVSRDIKE 46 (148)
T ss_pred HHHHHHHHcCCCeehHHHHHHHHH
Confidence 688899999999887776554443
No 183
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.32 E-value=1e+02 Score=19.24 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 28 PMFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 28 P~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
=++++|++|...|+.+ +.|+.....+
T Consensus 13 ~~~~~a~~l~~~G~~i--~AT~gTa~~L 38 (112)
T cd00532 13 MLVDLAPKLSSDGFPL--FATGGTSRVL 38 (112)
T ss_pred HHHHHHHHHHHCCCEE--EECcHHHHHH
Confidence 4778999999998865 5565554444
No 184
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=20.16 E-value=1.1e+02 Score=19.25 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCcEEEEEcCchhHHHh
Q 046355 29 MFQLAKLLHHKGFHITFVNTEFNQRRL 55 (127)
Q Consensus 29 ~l~la~~L~~~g~~VT~v~t~~~~~~~ 55 (127)
++++++.|...|+.+ +.|+.....+
T Consensus 15 ~~~~a~~l~~~G~~i--~aT~gTa~~L 39 (116)
T cd01423 15 LLPTAQKLSKLGYKL--YATEGTADFL 39 (116)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 678999999999876 4555454443
No 185
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=20.15 E-value=1e+02 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCcEEEEEcCch
Q 046355 27 NPMFQLAKLLHHKGFHITFVNTEF 50 (127)
Q Consensus 27 ~P~l~la~~L~~~g~~VT~v~t~~ 50 (127)
.=+-.|++.|+.+|..|.++++..
T Consensus 21 ~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC
Confidence 444678999999999999998653
Done!