Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>046357
MTLQKSETSSLPTGWEVNAIINFFFYCEKHFRAVKTKWCITKFIDLETLSNTLNEYLIND
VCVCGCVCEEVFVVKNTFKGERSSMMHEPPHLLPYLESCAQLMSLAKLKDPKEGYMVRDI
CIIKAEFTLLGVVLAKT

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046357
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2089045 - symbol:AT3G17380 "AT3G17380" species...    89  3.9e-07   2
TAIR|locus:2179744 - symbol:AT5G26260 "AT5G26260" species...    82  2.7e-05   2


>TAIR|locus:2089045 [details] [associations]
            symbol:AT3G17380 "AT3G17380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002083 InterPro:IPR008974 Pfam:PF00917
            PROSITE:PS50144 SMART:SM00061 EMBL:CP002686 SUPFAM:SSF49599
            UniGene:At.5781 UniGene:At.70071 IPI:IPI00530433 RefSeq:NP_566576.1
            ProteinModelPortal:F4J556 SMR:F4J556 PRIDE:F4J556
            EnsemblPlants:AT3G17380.1 GeneID:821002 KEGG:ath:AT3G17380
            OMA:HAIERYE Uniprot:F4J556
        Length = 309

 Score = 89 (36.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query:     3 LQKSETSSLPTGWEVNAIINFFF-------YC-----EKHFRAVKTKWCITKFIDLETLS 50
             L  +++SSL  GWEV A+   +        Y      E+ F +VK +W   KFI   T S
Sbjct:    74 LSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQGNERRFHSVKREWGFDKFIPTGTFS 133

Query:    51 NTLNEYLIND 60
             +  N YL+ D
Sbjct:   134 DASNGYLMED 143

 Score = 58 (25.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query:   103 MSLAKLKDPKEGYMVRDICIIKAEFTLLGVVLA 135
             +S+     P  G +++D+C+++A+  + G+  A
Sbjct:   276 VSMVYFTQPNSGLLLKDVCLVEADVCVHGITSA 308


>TAIR|locus:2179744 [details] [associations]
            symbol:AT5G26260 "AT5G26260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR002083 InterPro:IPR008974 Pfam:PF00917 PROSITE:PS50144
            SMART:SM00061 GO:GO:0009506 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 EMBL:AF077407 SUPFAM:SSF49599 eggNOG:KOG1987
            EMBL:AF370133 EMBL:AY051023 IPI:IPI00530527 PIR:T01845
            RefSeq:NP_568483.1 UniGene:At.24838 UniGene:At.46463
            ProteinModelPortal:O81493 PaxDb:O81493 PRIDE:O81493
            EnsemblPlants:AT5G26260.1 GeneID:832695 KEGG:ath:AT5G26260
            TAIR:At5g26260 HOGENOM:HOG000015142 InParanoid:O81493 OMA:SICRIAF
            PhylomeDB:O81493 ProtClustDB:CLSN2686929 ArrayExpress:O81493
            Genevestigator:O81493 Uniprot:O81493
        Length = 351

 Score = 82 (33.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 26/97 (26%), Positives = 36/97 (37%)

Query:     7 ETSSLPTGWEVNAIINFFFYCEK-------------HFRAVKTKWCITKFIDLETLSNTL 53
             ET +LP GWEVN  +  F +  K              +   K +W  T+ I L T  N  
Sbjct:   118 ETETLPRGWEVNVDLKLFVHNRKLKKYLSVTDGTVKRYNDAKKEWGFTQLISLPTFYNAN 177

Query:    54 NEYLINDXXXXXXXXXXXXXXKNTFKGERSSMMHEPP 90
               YL+ D                T K E+ + +  PP
Sbjct:   178 EGYLVQDTASFGAEIFIV---NPTEKQEKVTFISNPP 211

 Score = 63 (27.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query:   102 LMSLAKLKDPKEGYMVRDICIIKAEFTLLGV 132
             ++ +++LKD  +GYMV D  I +AE   + V
Sbjct:   315 IILMSELKDASKGYMVNDAIIFEAEMVKVSV 345


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       123   0.00091  102 3  11 22  0.48    30
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.97u 0.10s 11.07t   Elapsed:  00:00:01
  Total cpu time:  10.97u 0.10s 11.07t   Elapsed:  00:00:01
  Start:  Sat May 11 08:29:32 2013   End:  Sat May 11 08:29:33 2013

Back to top