BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046357
         (137 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
           GN=UBP12 PE=1 SV=2
          Length = 1116

 Score = 33.1 bits (74), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 1   MTLQKSETSSLPTGWEVNAIINFFFYCEKH------------FRAVKTKWCITKFIDLET 48
           M L  S+ +SLP GW   A  +     + H            F A ++ W  T F+ L  
Sbjct: 100 MYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSE 159

Query: 49  LSNTLNEYLIND 60
           L +    YL+ND
Sbjct: 160 LYDPSRGYLVND 171



 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 102 LMSLAKLKDPKEGYMVRDICIIKAEFTLLGVV 133
            M L++L DP  GY+V D  +++AE  +  V+
Sbjct: 154 FMPLSELYDPSRGYLVNDTVLVEAEVAVRKVL 185


>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
           GN=UBP13 PE=1 SV=1
          Length = 1115

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 1   MTLQKSETSSLPTGWE---------VNAIINFFFY---CEKHFRAVKTKWCITKFIDLET 48
           M L  ++ ++LP GW          VN + N +      +  F A ++ W  T F+ L  
Sbjct: 99  MYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSE 158

Query: 49  LSNTLNEYLIND 60
           L      YL+ND
Sbjct: 159 LYEPTRGYLVND 170


>sp|Q6DCZ7|FBP1L_XENLA Formin-binding protein 1-like OS=Xenopus laevis GN=fnbp1l PE=1 SV=1
          Length = 543

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 67  VCEEVFVVKNTFKGERSSMMHEPPHLLPYLESCAQLMSLAKLKDPKE 113
           V  E+    N  KGER S +HE      YL+ C + M  +K K  +E
Sbjct: 97  VYAEIMRYSNDIKGERKSHLHEGRKAQQYLDMCLKQMDNSKRKFERE 143


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,635,338
Number of Sequences: 539616
Number of extensions: 1601391
Number of successful extensions: 3981
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3976
Number of HSP's gapped (non-prelim): 5
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)