Query 046357
Match_columns 137
No_of_seqs 172 out of 329
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 99.6 1.3E-15 4.4E-20 111.4 6.2 74 1-78 67-152 (155)
2 3ivv_A Speckle-type POZ protei 99.5 4.4E-15 1.5E-19 107.6 3.8 68 1-76 65-145 (145)
3 2f1z_A Ubiquitin carboxyl-term 99.3 6.6E-13 2.3E-17 113.6 5.0 73 1-77 79-163 (522)
4 4gjh_A TNF receptor-associated 99.2 2.3E-12 7.8E-17 96.8 2.7 71 1-74 81-173 (178)
5 1ca9_A TRAF2, protein (TNF rec 99.2 4.7E-12 1.6E-16 95.9 2.0 71 1-75 100-191 (192)
6 3hqi_A Speckle-type POZ protei 99.2 1.6E-11 5.5E-16 98.1 4.7 69 1-77 61-142 (312)
7 1d00_A Tumor necrosis factor r 99.2 7E-12 2.4E-16 92.5 2.4 70 1-74 76-166 (168)
8 1lb6_A TNF receptor-associated 99.1 6.3E-11 2.1E-15 87.0 3.7 72 1-77 63-159 (160)
9 4ghu_A TNF receptor-associated 99.0 7E-11 2.4E-15 90.7 1.2 72 1-77 97-190 (198)
10 2gkw_A TNF receptor-associated 99.0 1.1E-10 3.8E-15 88.7 1.6 69 1-74 97-187 (192)
11 1flk_A TNF receptor associated 98.9 1.3E-10 4.6E-15 90.6 1.3 70 1-75 133-224 (228)
12 2foj_A Ubiquitin carboxyl-term 98.6 2.2E-08 7.5E-13 72.7 3.4 36 98-133 116-151 (155)
13 3ivv_A Speckle-type POZ protei 98.1 4.8E-07 1.6E-11 64.9 1.1 34 98-131 111-144 (145)
14 3hqi_A Speckle-type POZ protei 97.8 8.6E-06 2.9E-10 64.7 3.4 35 98-132 107-141 (312)
15 4gjh_A TNF receptor-associated 97.7 7.7E-06 2.6E-10 61.0 1.4 33 98-130 141-173 (178)
16 1d00_A Tumor necrosis factor r 97.5 4.2E-05 1.4E-09 55.8 2.4 32 98-130 135-166 (168)
17 1lb6_A TNF receptor-associated 97.5 5.9E-05 2E-09 54.8 3.2 32 98-131 126-157 (160)
18 1ca9_A TRAF2, protein (TNF rec 97.4 3.9E-05 1.3E-09 57.6 1.7 32 98-130 159-190 (192)
19 2f1z_A Ubiquitin carboxyl-term 97.4 3.9E-05 1.3E-09 65.3 1.8 35 98-132 128-162 (522)
20 4ghu_A TNF receptor-associated 96.8 0.00022 7.4E-09 54.3 0.0 32 98-131 157-188 (198)
21 2gkw_A TNF receptor-associated 96.7 0.00032 1.1E-08 52.8 0.8 31 98-130 157-187 (192)
22 1flk_A TNF receptor associated 96.7 0.00043 1.5E-08 53.5 1.0 32 98-131 193-224 (228)
23 4gwm_A Meprin A subunit beta; 90.1 0.086 2.9E-06 46.3 1.2 35 37-76 534-568 (592)
24 4gwm_A Meprin A subunit beta; 66.9 2.8 9.6E-05 36.7 2.4 31 99-131 537-567 (592)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.59 E-value=1.3e-15 Score=111.42 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=64.8
Q ss_pred CeEEecCCCCCCCCCEEEEEEEEEEEe------------CcccccccccccccceeccccccccCCceEeCCeEEEEEee
Q 046357 1 MTLQKSETSSLPTGWEVNAIINFFFYC------------EKHFRAVKTKWCITKFIDLETLSNTLNEYLINDVCVCGCVC 68 (137)
Q Consensus 1 lYL~~~~~~~l~~~w~v~a~fkl~i~N------------~~~F~~~~~~wG~~~fi~l~~l~d~~~GyLv~D~~v~~a~~ 68 (137)
+||+++. +..+++|.++|+|+|+|+| .++|+.....|||++||++++|.|+.+|||+||+++|+|
T Consensus 67 lyL~~~~-~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~-- 143 (155)
T 2foj_A 67 FFLQCNA-ESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEV-- 143 (155)
T ss_dssp EEEEEST-TCCCSSCEEEEEEEEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEE--
T ss_pred EEEEeCC-CCCCCCCEEEEEEEEEEEcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEE--
Confidence 5898854 4578899999999999998 346877678999999999999999999999999999999
Q ss_pred eeEEEEccCC
Q 046357 69 EEVFVVKNTF 78 (137)
Q Consensus 69 ~eV~vv~~~~ 78 (137)
+|.|.++++
T Consensus 144 -~V~V~~~tG 152 (155)
T 2foj_A 144 -FVQADAPHG 152 (155)
T ss_dssp -EEEECCCBS
T ss_pred -EEEEeCccc
Confidence 999977654
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.52 E-value=4.4e-15 Score=107.64 Aligned_cols=68 Identities=28% Similarity=0.324 Sum_probs=59.0
Q ss_pred CeEEecCCCCCCCCCEEEEEEEEEEEe-------------CcccccccccccccceeccccccccCCceEeCCeEEEEEe
Q 046357 1 MTLQKSETSSLPTGWEVNAIINFFFYC-------------EKHFRAVKTKWCITKFIDLETLSNTLNEYLINDVCVCGCV 67 (137)
Q Consensus 1 lYL~~~~~~~l~~~w~v~a~fkl~i~N-------------~~~F~~~~~~wG~~~fi~l~~l~d~~~GyLv~D~~v~~a~ 67 (137)
+||++.+. ++|.++|+|+|+|+| .++|+ ....|||++||++++|+++++|||+||+++|+|
T Consensus 65 lyL~l~~~----~~w~v~a~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~- 138 (145)
T 3ivv_A 65 LYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFC- 138 (145)
T ss_dssp EEEEEEEC----SSSEEEEEEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEE-
T ss_pred EEEEEcCC----CCCcEEEEEEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEE-
Confidence 58888764 579999999999998 24575 357899999999999999999999999999999
Q ss_pred eeeEEEEcc
Q 046357 68 CEEVFVVKN 76 (137)
Q Consensus 68 ~~eV~vv~~ 76 (137)
+|.|+++
T Consensus 139 --~V~V~~d 145 (145)
T 3ivv_A 139 --EVSVVQD 145 (145)
T ss_dssp --EEEECC-
T ss_pred --EEEEEeC
Confidence 9999864
No 3
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=113.57 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=65.7
Q ss_pred CeEEecCCCCCCCCCEEEEEEEEEEEe------------CcccccccccccccceeccccccccCCceEeCCeEEEEEee
Q 046357 1 MTLQKSETSSLPTGWEVNAIINFFFYC------------EKHFRAVKTKWCITKFIDLETLSNTLNEYLINDVCVCGCVC 68 (137)
Q Consensus 1 lYL~~~~~~~l~~~w~v~a~fkl~i~N------------~~~F~~~~~~wG~~~fi~l~~l~d~~~GyLv~D~~v~~a~~ 68 (137)
+||++.+. ..+++|+++|+|+|+++| .++|.....+|||++||++++|.++.+|||+||+++|+|
T Consensus 79 lyL~~~~~-~~~~~w~v~a~f~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~-- 155 (522)
T 2f1z_A 79 FFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEV-- 155 (522)
T ss_dssp EEEEESTT-CCCSSCBEEEEEEEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEE--
T ss_pred EEEEecCC-CCCCCceEEEEEEEEEEcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEE--
Confidence 59999877 578899999999999998 467877778999999999999999999999999999999
Q ss_pred eeEEEEccC
Q 046357 69 EEVFVVKNT 77 (137)
Q Consensus 69 ~eV~vv~~~ 77 (137)
+|.|..+.
T Consensus 156 -~V~v~~p~ 163 (522)
T 2f1z_A 156 -FVQADAPH 163 (522)
T ss_dssp -EEEECCCB
T ss_pred -Eeeccccc
Confidence 99997554
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.24 E-value=2.3e-12 Score=96.84 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=58.0
Q ss_pred CeEEecCCCC-CCCCCEEEEEEEEEEEeC-----------------ccccc----ccccccccceeccccccccCCceEe
Q 046357 1 MTLQKSETSS-LPTGWEVNAIINFFFYCE-----------------KHFRA----VKTKWCITKFIDLETLSNTLNEYLI 58 (137)
Q Consensus 1 lYL~~~~~~~-l~~~w~v~a~fkl~i~N~-----------------~~F~~----~~~~wG~~~fi~l~~l~d~~~GyLv 58 (137)
+||.+.+.+. ...+|.+.|+|+|+|+|+ ++|+. ....|||++||++++|.++++|||+
T Consensus 81 lyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~ 160 (178)
T 4gjh_A 81 LYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIK 160 (178)
T ss_dssp EEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSB
T ss_pred EEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCc
Confidence 5888866542 345899999999999981 35552 3468999999999999999999999
Q ss_pred CCeEEEEEeeeeEEEE
Q 046357 59 NDVCVCGCVCEEVFVV 74 (137)
Q Consensus 59 ~D~~v~~a~~~eV~vv 74 (137)
||+++|+| +|.|.
T Consensus 161 dD~l~I~~---~V~i~ 173 (178)
T 4gjh_A 161 DDTLFLKV---AVDLT 173 (178)
T ss_dssp TTBEEEEE---EECCT
T ss_pred CCEEEEEE---EEEec
Confidence 99999999 88654
No 5
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.18 E-value=4.7e-12 Score=95.91 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=58.4
Q ss_pred CeEEecCCCCCC-CCCEEEEEEEEEEEe---C-------------cccc----cccccccccceeccccccccCCceEeC
Q 046357 1 MTLQKSETSSLP-TGWEVNAIINFFFYC---E-------------KHFR----AVKTKWCITKFIDLETLSNTLNEYLIN 59 (137)
Q Consensus 1 lYL~~~~~~~l~-~~w~v~a~fkl~i~N---~-------------~~F~----~~~~~wG~~~fi~l~~l~d~~~GyLv~ 59 (137)
+||.+.+.+..+ .+|.++|+|+|+|+| . +.|+ .....|||++||++++|.+ ++|||+|
T Consensus 100 lyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~d 178 (192)
T 1ca9_A 100 LFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRD 178 (192)
T ss_dssp EEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBT
T ss_pred EEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeC
Confidence 589988876665 789999999999998 1 1254 2345899999999999997 6899999
Q ss_pred CeEEEEEeeeeEEEEc
Q 046357 60 DVCVCGCVCEEVFVVK 75 (137)
Q Consensus 60 D~~v~~a~~~eV~vv~ 75 (137)
|+++|+| +|.|.+
T Consensus 179 D~l~I~~---~V~V~~ 191 (192)
T 1ca9_A 179 DAIFIKA---IVDLTG 191 (192)
T ss_dssp TEEEEEE---EECCTT
T ss_pred CEEEEEE---EEEecC
Confidence 9999999 987753
No 6
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.17 E-value=1.6e-11 Score=98.10 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=58.4
Q ss_pred CeEEecCCCCCCCCCEEEEEEEEEEEe-------------CcccccccccccccceeccccccccCCceEeCCeEEEEEe
Q 046357 1 MTLQKSETSSLPTGWEVNAIINFFFYC-------------EKHFRAVKTKWCITKFIDLETLSNTLNEYLINDVCVCGCV 67 (137)
Q Consensus 1 lYL~~~~~~~l~~~w~v~a~fkl~i~N-------------~~~F~~~~~~wG~~~fi~l~~l~d~~~GyLv~D~~v~~a~ 67 (137)
+||.+.++ ++|.+.|+|+|+++| .++|+. ...|||++||++++|.++++|||+||+++|+|
T Consensus 61 lyL~~~~~----~~~~v~a~~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~- 134 (312)
T 3hqi_A 61 LYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFC- 134 (312)
T ss_dssp EEEEEEEC----CC-CEEEEEEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEE-
T ss_pred EEEEEcCC----CCCcEEEEEEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEE-
Confidence 57887754 379999999999998 346654 35899999999999999999999999999999
Q ss_pred eeeEEEEccC
Q 046357 68 CEEVFVVKNT 77 (137)
Q Consensus 68 ~~eV~vv~~~ 77 (137)
+|.|++..
T Consensus 135 --~v~v~~~~ 142 (312)
T 3hqi_A 135 --EVSVVQDS 142 (312)
T ss_dssp --EEEEEEEC
T ss_pred --EEEEEecc
Confidence 99999765
No 7
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.17 E-value=7e-12 Score=92.53 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=57.4
Q ss_pred CeEEecCCCCCC-CCCEEEEEEEEEEEeC----------------ccccc----ccccccccceeccccccccCCceEeC
Q 046357 1 MTLQKSETSSLP-TGWEVNAIINFFFYCE----------------KHFRA----VKTKWCITKFIDLETLSNTLNEYLIN 59 (137)
Q Consensus 1 lYL~~~~~~~l~-~~w~v~a~fkl~i~N~----------------~~F~~----~~~~wG~~~fi~l~~l~d~~~GyLv~ 59 (137)
+||.+.+.+..+ .+|.++|+|+|+|+|+ +.|.. ....|||++||++++|.++ +|||+|
T Consensus 76 lyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~d 154 (168)
T 1d00_A 76 LFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRD 154 (168)
T ss_dssp EEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBT
T ss_pred EEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeC
Confidence 589988776655 7999999999999981 14542 3467999999999999875 499999
Q ss_pred CeEEEEEeeeeEEEE
Q 046357 60 DVCVCGCVCEEVFVV 74 (137)
Q Consensus 60 D~~v~~a~~~eV~vv 74 (137)
|+++|+| +|.|.
T Consensus 155 D~l~I~~---~V~v~ 166 (168)
T 1d00_A 155 DAIFIKA---IVDLT 166 (168)
T ss_dssp TEEEEEE---EECCT
T ss_pred CEEEEEE---EEEec
Confidence 9999999 88763
No 8
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.07 E-value=6.3e-11 Score=86.98 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=54.8
Q ss_pred CeEEecCCCCC-CCCCEEEEEEEEEEEeCc-------------------cccc-----ccccccccceeccccccccCCc
Q 046357 1 MTLQKSETSSL-PTGWEVNAIINFFFYCEK-------------------HFRA-----VKTKWCITKFIDLETLSNTLNE 55 (137)
Q Consensus 1 lYL~~~~~~~l-~~~w~v~a~fkl~i~N~~-------------------~F~~-----~~~~wG~~~fi~l~~l~d~~~G 55 (137)
|||.+.+.+.. +.+|.+.|+|+|+|+|+. .|+. ....|||++||++++|. ++|
T Consensus 63 lyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~ 140 (160)
T 1lb6_A 63 LFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRT 140 (160)
T ss_dssp EEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSC
T ss_pred EEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCC
Confidence 58888766543 457999999999999921 2332 12379999999999998 589
Q ss_pred eEeCCeEEEEEeeeeEEEEccC
Q 046357 56 YLINDVCVCGCVCEEVFVVKNT 77 (137)
Q Consensus 56 yLv~D~~v~~a~~~eV~vv~~~ 77 (137)
||+||+++|+| +|.|+.+.
T Consensus 141 yl~dD~l~I~~---~V~v~~~~ 159 (160)
T 1lb6_A 141 FIKDDTLLVRC---EVSTRFDL 159 (160)
T ss_dssp CCBTTBEEEEE---EEEC----
T ss_pred CccCCEEEEEE---EEEEeecC
Confidence 99999999999 99998653
No 9
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.99 E-value=7e-11 Score=90.66 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=57.3
Q ss_pred CeEEecCCCCC-CCCCEEEEEEEEEEEeCc-----------------cc----ccccccccccceeccccccccCCceEe
Q 046357 1 MTLQKSETSSL-PTGWEVNAIINFFFYCEK-----------------HF----RAVKTKWCITKFIDLETLSNTLNEYLI 58 (137)
Q Consensus 1 lYL~~~~~~~l-~~~w~v~a~fkl~i~N~~-----------------~F----~~~~~~wG~~~fi~l~~l~d~~~GyLv 58 (137)
|||.+.+.+.- ..+|.+.|+|+|+|+|+. .| +.....|||++||++++|.+ +|||.
T Consensus 97 lyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~ 174 (198)
T 4ghu_A 97 LFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIK 174 (198)
T ss_dssp EEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCB
T ss_pred EEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCee
Confidence 58888765432 358999999999999921 12 23446899999999999984 89999
Q ss_pred CCeEEEEEeeeeEEEEccC
Q 046357 59 NDVCVCGCVCEEVFVVKNT 77 (137)
Q Consensus 59 ~D~~v~~a~~~eV~vv~~~ 77 (137)
||+++|+| +|.|+..+
T Consensus 175 dD~l~I~~---~V~v~~~~ 190 (198)
T 4ghu_A 175 DDTIFIKV---IVDTSDLP 190 (198)
T ss_dssp TTBEEEEE---EECCTTCC
T ss_pred CCEEEEEE---EEEeccCC
Confidence 99999999 99887644
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.97 E-value=1.1e-10 Score=88.74 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=56.0
Q ss_pred CeEEecCCCCC-CCCCEEEEEEEEEEEe-----C------------cccccc----cccccccceeccccccccCCceEe
Q 046357 1 MTLQKSETSSL-PTGWEVNAIINFFFYC-----E------------KHFRAV----KTKWCITKFIDLETLSNTLNEYLI 58 (137)
Q Consensus 1 lYL~~~~~~~l-~~~w~v~a~fkl~i~N-----~------------~~F~~~----~~~wG~~~fi~l~~l~d~~~GyLv 58 (137)
+||.+.+.+.. ..+|.+.|+|+|+|+| . ++|... ...|||++|||+++|.+ +|||+
T Consensus 97 lyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~ 174 (192)
T 2gkw_A 97 LFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIK 174 (192)
T ss_dssp EEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCB
T ss_pred EEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCee
Confidence 58988876654 4589999999999998 1 346432 35899999999999986 59999
Q ss_pred CCeEEEEEeeeeEEEE
Q 046357 59 NDVCVCGCVCEEVFVV 74 (137)
Q Consensus 59 ~D~~v~~a~~~eV~vv 74 (137)
||+++|+| +|.|.
T Consensus 175 dD~l~I~~---~V~v~ 187 (192)
T 2gkw_A 175 DDTIFIKV---IVDTS 187 (192)
T ss_dssp TTEEEEEE---EECCT
T ss_pred CCEEEEEE---EEEcC
Confidence 99999999 88653
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=98.95 E-value=1.3e-10 Score=90.58 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=56.1
Q ss_pred CeEEecCCCCC-CCCCEEEEEEEEEEEeC-----------------cccc----cccccccccceeccccccccCCceEe
Q 046357 1 MTLQKSETSSL-PTGWEVNAIINFFFYCE-----------------KHFR----AVKTKWCITKFIDLETLSNTLNEYLI 58 (137)
Q Consensus 1 lYL~~~~~~~l-~~~w~v~a~fkl~i~N~-----------------~~F~----~~~~~wG~~~fi~l~~l~d~~~GyLv 58 (137)
+||.+.+.+.. ..+|.+.|+|+|+|+|+ ++|. .....|||++|||+++|.+ +|||+
T Consensus 133 lyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~ 210 (228)
T 1flk_A 133 LFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIK 210 (228)
T ss_dssp EEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCC
T ss_pred EEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCcc
Confidence 58888766554 45899999999999981 1354 2235799999999999985 79999
Q ss_pred CCeEEEEEeeeeEEEEc
Q 046357 59 NDVCVCGCVCEEVFVVK 75 (137)
Q Consensus 59 ~D~~v~~a~~~eV~vv~ 75 (137)
||++.|+| +|.|.+
T Consensus 211 dD~l~I~~---~V~v~~ 224 (228)
T 1flk_A 211 DDTIFIKV---IVDTSD 224 (228)
T ss_dssp SSEEEEEE---ECCCTT
T ss_pred CCEEEEEE---EEEccc
Confidence 99999999 887754
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.60 E-value=2.2e-08 Score=72.71 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=33.5
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEEEe
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLGVV 133 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~~t 133 (137)
+|++||++++|.++++|||+||+++|||+|.|..+|
T Consensus 116 G~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 116 GFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp EEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred eECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 499999999999999999999999999999997765
No 13
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=98.13 E-value=4.8e-07 Score=64.93 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLG 131 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~ 131 (137)
+|++||++++|+++++|||+||+++|||+|.|++
T Consensus 111 G~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 111 GFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred CHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 4899999999999999999999999999999874
No 14
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.84 E-value=8.6e-06 Score=64.67 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=32.6
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLGV 132 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~~ 132 (137)
+|++||++++|.++++|||+||+++|+++|.|+..
T Consensus 107 G~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 107 GFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred CHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 48999999999999999999999999999999963
No 15
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=97.73 E-value=7.7e-06 Score=60.95 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=30.6
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLL 130 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~ 130 (137)
+|++||++++|.++++|||+||+++|+|+|.|.
T Consensus 141 G~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~ 173 (178)
T 4gjh_A 141 GCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173 (178)
T ss_dssp EEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCT
T ss_pred ChhheeEHHHhhccccCcCcCCEEEEEEEEEec
Confidence 499999999999999999999999999999664
No 16
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=97.49 E-value=4.2e-05 Score=55.83 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=28.5
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLL 130 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~ 130 (137)
+|++||++++|.++ +|||+||+++|+++|.|.
T Consensus 135 G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 135 GCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp EEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred CcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 49999999999875 599999999999999763
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=97.49 E-value=5.9e-05 Score=54.78 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.0
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLG 131 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~ 131 (137)
+|++||++++|. ++|||+||+++|+++|.|+.
T Consensus 126 G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp EEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC--
T ss_pred CEeeEeEHHHhh--hCCCccCCEEEEEEEEEEee
Confidence 599999999997 57999999999999999874
No 18
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=97.44 E-value=3.9e-05 Score=57.56 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=29.3
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLL 130 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~ 130 (137)
+|++||++++|.+ ++|||+||+++|+++|.|.
T Consensus 159 G~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 159 GCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp EEEEEEETHHHHS-SCSSCBTTEEEEEEEECCT
T ss_pred ChhheeEHHHhhh-ccCCEeCCEEEEEEEEEec
Confidence 5999999999987 6899999999999999774
No 19
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=97.43 E-value=3.9e-05 Score=65.33 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=31.9
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLGV 132 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~~ 132 (137)
+|++||++++|.++++|||+||++.|+|+|.|...
T Consensus 128 G~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p 162 (522)
T 2f1z_A 128 GFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 162 (522)
T ss_dssp EESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred chhheeEhhHhcCcccCcccCCcEEEEEEeecccc
Confidence 49999999999999999999999999999988543
No 20
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=96.76 E-value=0.00022 Score=54.28 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.8
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLG 131 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~ 131 (137)
+|++||++++|.+ +|||+||+++|+++|.++.
T Consensus 157 G~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 157 GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp EEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTT
T ss_pred CchhEeEHHHhhh--cCCeeCCEEEEEEEEEecc
Confidence 4999999999974 8999999999999998764
No 21
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=96.75 E-value=0.00032 Score=52.76 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.6
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLL 130 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~ 130 (137)
+|++||++++|.+ +|||+||+++|+++|.|.
T Consensus 157 G~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~ 187 (192)
T 2gkw_A 157 GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS 187 (192)
T ss_dssp EEEEEEEHHHHHH--TTSCBTTEEEEEEEECCT
T ss_pred ChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcC
Confidence 5999999999986 599999999999999653
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=96.65 E-value=0.00043 Score=53.49 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.7
Q ss_pred ccceeeecccccCCCCCeEEcCeEEEEEEEEEEE
Q 046357 98 SCAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLG 131 (137)
Q Consensus 98 d~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~ 131 (137)
+|++||++++|.+ +|||+||++.|+++|.+.+
T Consensus 193 G~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 193 GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp SEEEEEEHHHHSS--STTCCSSEEEEEEECCCTT
T ss_pred CHHHeeEHHHHcc--CCCccCCEEEEEEEEEccc
Confidence 5999999999986 7999999999999997754
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=90.11 E-value=0.086 Score=46.34 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.0
Q ss_pred cccccceeccccccccCCceEeCCeEEEEEeeeeEEEEcc
Q 046357 37 KWCITKFIDLETLSNTLNEYLINDVCVCGCVCEEVFVVKN 76 (137)
Q Consensus 37 ~wG~~~fi~l~~l~d~~~GyLv~D~~v~~a~~~eV~vv~~ 76 (137)
.|||+.||+++.|+ +..||.||.++|-+ +|+=+..
T Consensus 534 ~~G~~~fish~~l~--~r~fiK~d~~~i~~---~~eD~~~ 568 (592)
T 4gwm_A 534 GYGTSAFITHERLK--SRDFIKGDDVYILL---TVEDISH 568 (592)
T ss_dssp EEEEEEEEEHHHHT--STTSSBTTBEEEEE---EEEECGG
T ss_pred CcCccccccHHHHh--hcCcccCCeEEEEE---EEEeCcc
Confidence 48999999999998 45699999999999 6654443
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=66.88 E-value=2.8 Score=36.74 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=27.6
Q ss_pred cceeeecccccCCCCCeEEcCeEEEEEEEEEEE
Q 046357 99 CAQLMSLAKLKDPKEGYMVRDICIIKAEFTLLG 131 (137)
Q Consensus 99 ~~~fi~l~~l~~~~~gylv~D~~~ieaev~i~~ 131 (137)
|+.||+.+.|+ ++.||.+|+++|-++|+=++
T Consensus 537 ~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~ 567 (592)
T 4gwm_A 537 TSAFITHERLK--SRDFIKGDDVYILLTVEDIS 567 (592)
T ss_dssp EEEEEEHHHHT--STTSSBTTBEEEEEEEEECG
T ss_pred ccccccHHHHh--hcCcccCCeEEEEEEEEeCc
Confidence 78999999996 57899999999999997665
Done!