BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046359
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RDY4|S27A4_PONAB Long-chain fatty acid transport protein 4 OS=Pongo abelii
           GN=SLC27A4 PE=2 SV=1
          Length = 643

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 23  EVCSYPFAVPGYMGGGGPAALKPPNGNVGVDGMISVIAHEL 63
           +V  Y   VPG  G  G AA+  P GN  ++    V+  EL
Sbjct: 533 DVAVYGVEVPGTEGRAGMAAVASPTGNCDLERFAQVLEKEL 573


>sp|Q6P1M0|S27A4_HUMAN Long-chain fatty acid transport protein 4 OS=Homo sapiens
           GN=SLC27A4 PE=1 SV=1
          Length = 643

 Score = 29.3 bits (64), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 23  EVCSYPFAVPGYMGGGGPAALKPPNGNVGVDGMISVIAHEL 63
           +V  Y   VPG  G  G AA+  P GN  ++    V+  EL
Sbjct: 533 DVAVYGVEVPGTEGRAGMAAVASPTGNCDLERFAQVLEKEL 573


>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2
          Length = 541

 Score = 29.3 bits (64), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 41  AALKPPNGNVGVDGMISVIAHELAELS----TNPLVNAWYAGED 80
           A  K P G     GM+ VI H   ++     TNP V  ++ GE+
Sbjct: 407 AVQKAPEGTPAAGGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEE 450


>sp|Q55G81|ERCC2_DICDI TFIIH basal transcription factor complex helicase repD subunit
          OS=Dictyostelium discoideum GN=repD PE=2 SV=1
          Length = 776

 Score = 29.3 bits (64), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 10 PYAWIGNSAKQRPEVCSYPFAVPGYMGGGGPAALKPPNGNVGVDGMISVIAHELAELSTN 69
          PY++I       PE  SY  A+   +  GGP  L+ P+G      ++S+I+    +   N
Sbjct: 13 PYSYI------YPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQVK---N 63

Query: 70 PLVNAWYAGEDPTEIGDLCE 89
          P +   Y      EI    E
Sbjct: 64 PSIKLIYCSRTVPEIEQATE 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.140    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,587,457
Number of Sequences: 539616
Number of extensions: 1972849
Number of successful extensions: 4515
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4456
Number of HSP's gapped (non-prelim): 68
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)