Query 046359
Match_columns 103
No_of_seqs 103 out of 122
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 11:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04674 Phi_1: Phosphate-indu 100.0 1.7E-56 3.7E-61 357.3 9.0 98 4-103 136-235 (273)
2 TIGR03278 methan_mark_10 putat 32.9 24 0.00053 29.9 1.3 15 15-29 3-17 (404)
3 PF13179 DUF4006: Family of un 32.0 46 0.001 22.3 2.3 22 51-72 12-47 (66)
4 COG1533 SplB DNA repair photol 27.1 1.1E+02 0.0024 24.8 4.2 63 4-72 22-96 (297)
5 KOG2661 Peptidase family M48 [ 24.6 63 0.0014 28.3 2.4 28 40-67 249-287 (424)
6 PHA02706 hypothetical protein; 20.7 51 0.0011 21.5 0.9 22 55-78 15-36 (58)
7 PF13614 AAA_31: AAA domain; P 15.2 1.3E+02 0.0028 20.2 1.9 25 43-67 5-29 (157)
8 KOG1047 Bifunctional leukotrie 15.0 79 0.0017 29.1 1.0 17 55-71 288-309 (613)
9 cd05311 NAD_bind_2_malic_enz N 14.9 1.2E+02 0.0026 23.2 1.9 19 52-70 180-198 (226)
10 PRK09939 putative oxidoreducta 14.3 78 0.0017 29.0 0.8 17 51-67 126-142 (759)
No 1
>PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins. A conserved region in these proteins was identified in a phosphate-induced protein of unknown function [].
Probab=100.00 E-value=1.7e-56 Score=357.33 Aligned_cols=98 Identities=52% Similarity=0.931 Sum_probs=94.6
Q ss_pred CCCccccEEEeeCCCCCCCCCCCCCCccCCCCCCCCCCcccCCCCCCcchhHHHHHHHHHHHhhcCccccccccCC--CC
Q 046359 4 RGGLLVPYAWIGNSAKQRPEVCSYPFAVPGYMGGGGPAALKPPNGNVGVDGMISVIAHELAELSTNPLVNAWYAGE--DP 81 (103)
Q Consensus 4 ~~~~~~~YawVGN~~~qCpg~CAwPf~~p~ygp~~~~~~l~~PNgDvGvDgMv~~iA~~LA~~~TNP~~ng~yqg~--~p 81 (103)
.++.+++|+|||||++||||+||||||+|+||||+++ |++||||||||||||||||||||++||||+|||||++ +|
T Consensus 136 ~~~~~~~YawVGns~~qCPg~CAwPf~~p~ygp~~~~--l~~PNgDvGvDGMvi~iA~~LA~~~TNP~~~g~yqg~~~ap 213 (273)
T PF04674_consen 136 SVGKRLPYAWVGNSETQCPGQCAWPFHQPIYGPQGPP--LVPPNGDVGVDGMVINIAHELAGAVTNPFGNGYYQGDATAP 213 (273)
T ss_pred ccccceeEEEecCccCCCCCCCCCCCcccccCCCCCC--ccCCCCCcchhhHHHHHHHHHHHhhcCccccccccCCCCCc
Confidence 3567999999999999999999999999999999999 9999999999999999999999999999999999987 68
Q ss_pred cccccccccccCCCCCCCCcCC
Q 046359 82 TEIGDLCEGLYGSGAEEGILVK 103 (103)
Q Consensus 82 lEaa~~C~gvyG~ga~pgy~~~ 103 (103)
+||+|+|+||||+||||||+|+
T Consensus 214 lEaa~aC~giyG~Gaypgy~G~ 235 (273)
T PF04674_consen 214 LEAADACAGIYGSGAYPGYPGQ 235 (273)
T ss_pred cchhhhccccccCCCCCCCCcc
Confidence 9999999999999999999986
No 2
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.91 E-value=24 Score=29.90 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=13.1
Q ss_pred eCCCCCCCCCCCCCC
Q 046359 15 GNSAKQRPEVCSYPF 29 (103)
Q Consensus 15 GN~~~qCpg~CAwPf 29 (103)
|.+.+-|++.|.|=.
T Consensus 3 ~~~~~gC~~~C~wC~ 17 (404)
T TIGR03278 3 GRPGIDCRGFCRYCY 17 (404)
T ss_pred CCCCCCCCCcCCCCC
Confidence 789999999999953
No 3
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=32.04 E-value=46 Score=22.31 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHH--------------HhhcCccc
Q 046359 51 GVDGMISVIAHELA--------------ELSTNPLV 72 (103)
Q Consensus 51 GvDgMv~~iA~~LA--------------~~~TNP~~ 72 (103)
|+-||+|..+-+|+ +.+||||.
T Consensus 12 Gi~G~LIAvvLLLsIl~~lt~~ai~~Qq~~At~~Y~ 47 (66)
T PF13179_consen 12 GITGMLIAVVLLLSILAFLTYWAIKVQQEQATNPYK 47 (66)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 68899998888877 67788876
No 4
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=27.15 E-value=1.1e+02 Score=24.84 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=45.2
Q ss_pred CCCccccEEEeeCCCCCCCCCCCCCCccCCCCCCCCCCcccCCCCCCcchh-HHHHHHHHHH-----------HhhcCcc
Q 046359 4 RGGLLVPYAWIGNSAKQRPEVCSYPFAVPGYMGGGGPAALKPPNGNVGVDG-MISVIAHELA-----------ELSTNPL 71 (103)
Q Consensus 4 ~~~~~~~YawVGN~~~qCpg~CAwPf~~p~ygp~~~~~~l~~PNgDvGvDg-Mv~~iA~~LA-----------~~~TNP~ 71 (103)
.+....++-|.-|+-.-|.-.|.|=|+++..+.-... + -.|-++- .+-.+.++|. +.+||||
T Consensus 22 ~~~~~~~~~y~inpy~GC~h~C~YCYa~~~~~~~~~~-----~-~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpy 95 (297)
T COG1533 22 NKSLLCPFDYTLNPYRGCSHGCIYCYARPMHGYLPKS-----P-TKVNVKENLLELLERELRKPGPKRTVIAISSVTDPY 95 (297)
T ss_pred ccCCCCCCceecCCcCCCCCCCceeecccccccccCC-----C-ceeeechhHHHHHHHHHhhccCCceEEEEecCCCCC
Confidence 5566778999999999999999999987665432111 1 4566666 5666777776 5788886
Q ss_pred c
Q 046359 72 V 72 (103)
Q Consensus 72 ~ 72 (103)
.
T Consensus 96 q 96 (297)
T COG1533 96 Q 96 (297)
T ss_pred C
Confidence 4
No 5
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=63 Score=28.32 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=23.6
Q ss_pred CCcccCCCCCC-----------cchhHHHHHHHHHHHhh
Q 046359 40 PAALKPPNGNV-----------GVDGMISVIAHELAELS 67 (103)
Q Consensus 40 ~~~l~~PNgDv-----------GvDgMv~~iA~~LA~~~ 67 (103)
||+.+-|+|.| +.||..-+||||+|-+|
T Consensus 249 pNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaV 287 (424)
T KOG2661|consen 249 PNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAV 287 (424)
T ss_pred CceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHH
Confidence 67789999987 46999999999999655
No 6
>PHA02706 hypothetical protein; Provisional
Probab=20.72 E-value=51 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhcCccccccccC
Q 046359 55 MISVIAHELAELSTNPLVNAWYAG 78 (103)
Q Consensus 55 Mv~~iA~~LA~~~TNP~~ng~yqg 78 (103)
|+.-||+++.++|- |.|+||--
T Consensus 15 mllgi~siiidtvi--finayfvk 36 (58)
T PHA02706 15 MLLGIASIIIDTVI--FINAYFVK 36 (58)
T ss_pred HHHhhHHHhhheee--eeehhhhh
Confidence 45556666666554 89998754
No 7
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=15.18 E-value=1.3e+02 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.9
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHhh
Q 046359 43 LKPPNGNVGVDGMISVIAHELAELS 67 (103)
Q Consensus 43 l~~PNgDvGvDgMv~~iA~~LA~~~ 67 (103)
..+|.|-+|.--++.+||..||+.-
T Consensus 5 v~s~~~g~G~t~~a~~lA~~la~~~ 29 (157)
T PF13614_consen 5 VWSPKGGVGKTTLALNLAAALARKG 29 (157)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcC
Confidence 5678899999999999999999765
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=14.96 E-value=79 Score=29.06 Aligned_cols=17 Identities=53% Similarity=0.772 Sum_probs=14.2
Q ss_pred HHHHHHHHHH-----HhhcCcc
Q 046359 55 MISVIAHELA-----ELSTNPL 71 (103)
Q Consensus 55 Mv~~iA~~LA-----~~~TNP~ 71 (103)
.+.+|||||| .+|||=-
T Consensus 288 l~~vIaHEIAHSWtGNlVTN~s 309 (613)
T KOG1047|consen 288 LVDVIAHEIAHSWTGNLVTNAS 309 (613)
T ss_pred hhhHHHHHhhhhhcccccccCc
Confidence 4889999999 6888873
No 9
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=14.95 E-value=1.2e+02 Score=23.19 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHhhcCc
Q 046359 52 VDGMISVIAHELAELSTNP 70 (103)
Q Consensus 52 vDgMv~~iA~~LA~~~TNP 70 (103)
-|.|++.-|+.||+.+++-
T Consensus 180 ~~~m~~~aa~~la~~~~~~ 198 (226)
T cd05311 180 TEEMKLAAAEAIADLAEEE 198 (226)
T ss_pred CHHHHHHHHHHHHhhCCcc
Confidence 4999999999999999864
No 10
>PRK09939 putative oxidoreductase; Provisional
Probab=14.30 E-value=78 Score=28.98 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=9.9
Q ss_pred cchhHHHHHHHHHHHhh
Q 046359 51 GVDGMISVIAHELAELS 67 (103)
Q Consensus 51 GvDgMv~~iA~~LA~~~ 67 (103)
.-|=-+--||..|.++.
T Consensus 126 SWdEAl~~Ia~~L~~i~ 142 (759)
T PRK09939 126 SWQQAFDEIGARLQSYS 142 (759)
T ss_pred cHHHHHHHHHHHHHhhc
Confidence 44555566666666554
Done!