Query 046359
Match_columns 103
No_of_seqs 103 out of 122
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b5b_A Defensin; antibiotic; N 49.9 5.9 0.0002 22.8 1.0 11 18-28 1-11 (36)
2 3cqb_A Probable protease HTPX 13.4 93 0.0032 20.0 1.8 16 53-68 81-96 (107)
3 1dec_A Decorsin; blood coagula 12.1 51 0.0017 19.1 0.2 11 19-29 20-31 (39)
4 1ans_A Neurotoxin III; NMR {An 11.2 91 0.0031 16.9 1.0 6 23-28 14-19 (27)
5 4gvb_B VP12.5, KP6 killer toxi 9.4 1E+02 0.0035 20.2 0.9 32 44-81 13-44 (81)
6 2ljs_A Trypsin inhibitor 3; be 9.3 79 0.0027 17.5 0.3 8 19-26 15-22 (30)
7 1ag7_A Conotoxin GS; neurotoxi 9.2 1E+02 0.0036 17.3 0.8 11 18-28 6-16 (34)
8 3c37_A Peptidase, M48 family; 9.0 1.5E+02 0.0051 21.7 1.8 27 40-66 74-111 (253)
9 1bi6_H Bromelain inhibitor VI; 8.9 1.1E+02 0.0039 17.8 0.9 10 18-27 11-20 (41)
10 2y7s_A Factor H binding protei 8.7 83 0.0028 24.6 0.3 18 58-75 5-25 (256)
No 1
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=49.91 E-value=5.9 Score=22.84 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 046359 18 AKQRPEVCSYP 28 (103)
Q Consensus 18 ~~qCpg~CAwP 28 (103)
|+.|||+|..-
T Consensus 1 ekkcpgrctlk 11 (36)
T 2b5b_A 1 EKKCPGRCTLK 11 (36)
T ss_dssp CCCCSSCSSSS
T ss_pred CCCCCcceeEe
Confidence 57899999864
No 2
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=13.38 E-value=93 Score=19.99 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHhhc
Q 046359 53 DGMISVIAHELAELST 68 (103)
Q Consensus 53 DgMv~~iA~~LA~~~T 68 (103)
|-+..+|||||+-..-
T Consensus 81 ~El~aVlaHElgH~~~ 96 (107)
T 3cqb_A 81 DEAEAVLAHEVSHIAN 96 (107)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 4567789999987653
No 3
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=12.06 E-value=51 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.3
Q ss_pred CCC-CCCCCCCC
Q 046359 19 KQR-PEVCSYPF 29 (103)
Q Consensus 19 ~qC-pg~CAwPf 29 (103)
.+| ||||.+|.
T Consensus 20 decppgqcrfpr 31 (39)
T 1dec_A 20 DECPPGQCRFPR 31 (39)
T ss_dssp SEECTTCEECCS
T ss_pred CCCCCccccccC
Confidence 355 59999986
No 4
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=11.20 E-value=91 Score=16.91 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=3.5
Q ss_pred CCCCCC
Q 046359 23 EVCSYP 28 (103)
Q Consensus 23 g~CAwP 28 (103)
|||++|
T Consensus 14 GQ~~~~ 19 (27)
T 1ans_A 14 GQNCYP 19 (27)
T ss_dssp SCSSCS
T ss_pred cccccc
Confidence 556655
No 5
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=9.35 E-value=1e+02 Score=20.19 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=19.7
Q ss_pred cCCCCCCcchhHHHHHHHHHHHhhcCccccccccCCCC
Q 046359 44 KPPNGNVGVDGMISVIAHELAELSTNPLVNAWYAGEDP 81 (103)
Q Consensus 44 ~~PNgDvGvDgMv~~iA~~LA~~~TNP~~ng~yqg~~p 81 (103)
-.-||.|-.|+.. -|.-..|.|++|||...|.
T Consensus 13 dttnggvrldavt------raacsidsfidgyytekdg 44 (81)
T 4gvb_B 13 DTTNGGVRLDAVT------RAACSIDSFIDGYYTEKDG 44 (81)
T ss_dssp ESSGGGCBCHHHH------HHHHCCC----CEECTTTC
T ss_pred ecCCCcEEeehhh------hhhcchhhhhccceeccCc
Confidence 3468888888753 3556779999999986554
No 6
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=9.29 E-value=79 Score=17.53 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 046359 19 KQRPEVCS 26 (103)
Q Consensus 19 ~qCpg~CA 26 (103)
+.||+.|-
T Consensus 15 sdcpgeci 22 (30)
T 2ljs_A 15 SDCPGECI 22 (30)
T ss_dssp GGSSTTCC
T ss_pred cCCchhhe
Confidence 47899885
No 7
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=9.21 E-value=1e+02 Score=17.32 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q 046359 18 AKQRPEVCSYP 28 (103)
Q Consensus 18 ~~qCpg~CAwP 28 (103)
.++||-||-.=
T Consensus 6 gsrcppqccmg 16 (34)
T 1ag7_A 6 GSRCPPQCCMG 16 (34)
T ss_dssp TSCSSSCBCTT
T ss_pred CCCCChhhcee
Confidence 47899998753
No 8
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=9.03 E-value=1.5e+02 Score=21.65 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCcccCCCCCCc-----------chhHHHHHHHHHHHh
Q 046359 40 PAALKPPNGNVG-----------VDGMISVIAHELAEL 66 (103)
Q Consensus 40 ~~~l~~PNgDvG-----------vDgMv~~iA~~LA~~ 66 (103)
+|....|+|-|. -|-+..+|||||+-+
T Consensus 74 ~NAfa~~gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~ 111 (253)
T 3c37_A 74 VNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHA 111 (253)
T ss_dssp CCEEEETTTEEEEEHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCeeEcCCCeEEeeHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 455666766554 255667899999844
No 9
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=8.88 E-value=1.1e+02 Score=17.78 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 046359 18 AKQRPEVCSY 27 (103)
Q Consensus 18 ~~qCpg~CAw 27 (103)
-+.|||.|.-
T Consensus 11 ysdcpgfckt 20 (41)
T 1bi6_H 11 YSDCPGFCKT 20 (41)
T ss_dssp CSSCCTTCSS
T ss_pred ccCCchHHHH
Confidence 4689999864
No 10
>2y7s_A Factor H binding protein; immune system, antigen, epitope, antibody, structure-based D vaccine; 1.90A {Neisseria meningitidis serogroup B} PDB: 2kc0_A 2w80_C 2w81_C 3kvd_D 2kdy_A 1ys5_A
Probab=8.71 E-value=83 Score=24.59 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCccc---ccc
Q 046359 58 VIAHELAELSTNPLV---NAW 75 (103)
Q Consensus 58 ~iA~~LA~~~TNP~~---ng~ 75 (103)
-|+.-||.++|+||- .+|
T Consensus 5 ~~~~~l~~a~t~p~~~~~~g~ 25 (256)
T 2y7s_A 5 DIGAGLADALTAPLDHKDKGL 25 (256)
T ss_dssp ----CHHHHHHSCCCTTSCSC
T ss_pred hhhhhhhhhccCCCCCCcccc
Confidence 478889999999975 367
Done!