Query 046359
Match_columns 103
No_of_seqs 103 out of 122
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 19:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046359.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046359hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijdb_ f.3.1.1 (B:) Light-har 30.8 14 0.001 20.4 2.1 17 52-68 22-38 (40)
2 d1nkzb_ f.3.1.1 (B:) Light-har 28.1 18 0.0013 20.1 2.1 17 52-68 21-37 (41)
3 d1l6ja3 g.14.1.2 (A:216-274) G 27.9 8.3 0.0006 22.5 0.7 15 13-30 6-20 (59)
4 d1l6ja5 g.14.1.2 (A:332-390) G 24.2 9.9 0.00072 22.2 0.6 15 13-30 7-21 (59)
5 d1eaka5 g.14.1.2 (A:336-393) G 23.0 12 0.0009 21.6 0.8 14 14-30 6-19 (58)
6 d1eaka3 g.14.1.2 (A:217-277) G 22.6 10 0.00075 22.2 0.4 17 11-30 6-22 (61)
7 d2bi6h1 g.3.12.1 (H:8-31) Brom 20.7 16 0.0012 18.4 0.9 9 19-27 5-13 (26)
8 d1e88a1 g.14.1.2 (A:42-101) Fi 19.8 14 0.001 21.4 0.6 14 14-30 7-20 (60)
9 d1eaka4 g.14.1.2 (A:278-335) G 18.8 17 0.0012 20.9 0.8 15 13-30 5-19 (58)
10 d1pj3a1 c.2.1.7 (A:280-573) Mi 16.7 21 0.0016 26.2 1.1 19 52-70 208-226 (294)
No 1
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=30.84 E-value=14 Score=20.42 Aligned_cols=17 Identities=47% Similarity=0.225 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHhhc
Q 046359 52 VDGMISVIAHELAELST 68 (103)
Q Consensus 52 vDgMv~~iA~~LA~~~T 68 (103)
|=|+|..+||.||-+.|
T Consensus 22 vF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 22 VFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44789999999998776
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=28.10 E-value=18 Score=20.12 Aligned_cols=17 Identities=35% Similarity=0.165 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHhhc
Q 046359 52 VDGMISVIAHELAELST 68 (103)
Q Consensus 52 vDgMv~~iA~~LA~~~T 68 (103)
|=|+|..+||.||-+.|
T Consensus 21 vF~~iA~~AH~La~~~t 37 (41)
T d1nkzb_ 21 VFLGLALVAHFLAFSAT 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 44789999999998876
No 3
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.92 E-value=8.3 Score=22.53 Aligned_cols=15 Identities=33% Similarity=0.864 Sum_probs=11.4
Q ss_pred EeeCCCCCCCCCCCCCCc
Q 046359 13 WIGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 13 wVGN~~~qCpg~CAwPf~ 30 (103)
--||+..++ |.+||-
T Consensus 6 ~~Gns~G~~---C~FPF~ 20 (59)
T d1l6ja3 6 RFGNADGAA---CHFPFI 20 (59)
T ss_dssp BSSSSTTCB---CCSSEE
T ss_pred ecCcCCCCc---eECCEE
Confidence 358887763 999994
No 4
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.23 E-value=9.9 Score=22.17 Aligned_cols=15 Identities=47% Similarity=0.860 Sum_probs=11.0
Q ss_pred EeeCCCCCCCCCCCCCCc
Q 046359 13 WIGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 13 wVGN~~~qCpg~CAwPf~ 30 (103)
.-||+..+| |.+||-
T Consensus 7 ~GGns~G~~---C~FPF~ 21 (59)
T d1l6ja5 7 MGGNSAGEL---CVFPFT 21 (59)
T ss_dssp BSTTTTTCB---CCSSEE
T ss_pred ecCCCCCCc---cCCCEE
Confidence 457886653 999993
No 5
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.03 E-value=12 Score=21.62 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=10.1
Q ss_pred eeCCCCCCCCCCCCCCc
Q 046359 14 IGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 14 VGN~~~qCpg~CAwPf~ 30 (103)
-||+..+| |.+||-
T Consensus 6 gGns~G~~---C~FPF~ 19 (58)
T d1eaka5 6 GGNSEGAP---CVFPFT 19 (58)
T ss_dssp STTTTTCC---CCSSEE
T ss_pred cCCCCCCc---cCCCEE
Confidence 37776553 999994
No 6
>d1eaka3 g.14.1.2 (A:217-277) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.56 E-value=10 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=12.2
Q ss_pred EEEeeCCCCCCCCCCCCCCc
Q 046359 11 YAWIGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 11 YawVGN~~~qCpg~CAwPf~ 30 (103)
+.-.||+..+| |.+||-
T Consensus 6 ~t~~GNs~G~~---C~FPF~ 22 (61)
T d1eaka3 6 RVKYGNADGEY---CKFPFL 22 (61)
T ss_dssp BCBSGGGTTSB---CCSSEE
T ss_pred EEecccCCCCc---eECCEE
Confidence 33458987763 999994
No 7
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=20.72 E-value=16 Score=18.35 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 046359 19 KQRPEVCSY 27 (103)
Q Consensus 19 ~qCpg~CAw 27 (103)
+.|||.|.-
T Consensus 5 sdcpgfckt 13 (26)
T d2bi6h1 5 SDCPGFCKT 13 (26)
T ss_dssp SSCCTTCSS
T ss_pred ccCchHHHH
Confidence 589999864
No 8
>d1e88a1 g.14.1.2 (A:42-101) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.81 E-value=14 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=10.2
Q ss_pred eeCCCCCCCCCCCCCCc
Q 046359 14 IGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 14 VGN~~~qCpg~CAwPf~ 30 (103)
-||+..+| |.+||-
T Consensus 7 gGns~G~~---C~FPF~ 20 (60)
T d1e88a1 7 GGNSNGEP---CVLPFT 20 (60)
T ss_dssp SGGGTSCC---CCSSEE
T ss_pred ccCCCcCc---cCCCeE
Confidence 47876663 999994
No 9
>d1eaka4 g.14.1.2 (A:278-335) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.79 E-value=17 Score=20.91 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=10.7
Q ss_pred EeeCCCCCCCCCCCCCCc
Q 046359 13 WIGNSAKQRPEVCSYPFA 30 (103)
Q Consensus 13 wVGN~~~qCpg~CAwPf~ 30 (103)
.-||+..+ -|.+||-
T Consensus 5 ~gGns~g~---~C~FPF~ 19 (58)
T d1eaka4 5 MGGNAEGQ---PCKFPFR 19 (58)
T ss_dssp CSTTTTTC---CCCSSEE
T ss_pred ecCCcCCC---ccCCCEE
Confidence 34787655 4999994
No 10
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.70 E-value=21 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHhhcCc
Q 046359 52 VDGMISVIAHELAELSTNP 70 (103)
Q Consensus 52 vDgMv~~iA~~LA~~~TNP 70 (103)
-|.|++.-|+.||+.+++.
T Consensus 208 td~M~~aAA~aLA~~v~~~ 226 (294)
T d1pj3a1 208 SDSVFLEAAKALTSQLTDE 226 (294)
T ss_dssp CHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHhhCCcc
Confidence 4999999999999999876
Done!