BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046361
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/516 (42%), Positives = 322/516 (62%), Gaps = 22/516 (4%)
Query: 30 NFIKCLTAN--SEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTES 87
NF+KC + + + V P YT ++ ++S+L S+ QNLR++ + PKP I TP S
Sbjct: 6 NFLKCFSKHIPNNVANP-KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 88 HLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWV 147
H+QA ++CS+ + + +R RSGGHD EG+SY+SQ+ PF ++DL + SI++D++++TAWV
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAWV 122
Query: 148 QAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARI 207
+AGAT+GE+YY I+EK+ F G CP+V +MR YGLAADN++DA +
Sbjct: 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHL 182
Query: 208 VDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGA 266
V+ G++LDR++MGEDLFWAIR +FGII AWK+KL K +E G
Sbjct: 183 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL 242
Query: 267 TEILYKWQQVADNLDEHLFIR---VIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMH 323
++ KWQ +A D+ L + + + + K K TV ++++F G + L+ +M+
Sbjct: 243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 324 KKFPELGLTRNDCIEKSWIKSVLYIAGYPNYT----EPEILLEERSLFKSYFKAKSDFVK 379
K FPELG+ + DC E SWI + ++ +G N+ + EILL+ + K+ F K D+VK
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVK 362
Query: 380 EPIAETVLEGLWEMLLE---GHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTG 436
+PI ET + + E L E G +++ PYGG+M +ISE IPFPHR G ++++ Y
Sbjct: 363 KPIPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 437 W-KDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG-MNKKCNTSYIEAAT 494
W K DN KHI +R +Y++ PYVS PR AY+NYRDLDLG N +Y +A
Sbjct: 422 WEKQEDNE---KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478
Query: 495 WGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVP 530
WG KYF +NFNRLV+VK VDP N FR+EQSIPP+P
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/502 (42%), Positives = 304/502 (60%), Gaps = 19/502 (3%)
Query: 30 NFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHL 89
+F+ CLT + IP Y ++P++ SV S+ +N+++L KP +I TP SH+
Sbjct: 12 DFLTCLTKD----IPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHI 67
Query: 90 QAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQA 149
QAAV+C R + +R RSGGHDYEG+SY S+ PF ++D+ K+R++ +D TAWV +
Sbjct: 68 QAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDS 127
Query: 150 GATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIVD 209
GA +G+LYY I++ S GF AG+C ++ ++RKYG AADNV+DA++VD
Sbjct: 128 GAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVD 187
Query: 210 ARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATEI 269
A+GR+LDR+AMGED FWAIR SFGI+ +W+VKL K +++GA ++
Sbjct: 188 AQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDL 247
Query: 270 LYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPEL 329
+ KWQ VA L + L IR++ G+ + + AL+LG + L+ +M +FPEL
Sbjct: 248 VTKWQTVAPALPDDLMIRIMA-------MGQGAM---FEALYLGTCKDLVLLMTARFPEL 297
Query: 330 GLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEG 389
G+ C E +WI+SV YI P T + LL S K++ K KSD+V EPI ++ E
Sbjct: 298 GMNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPIPKSDWEK 356
Query: 390 LWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHI 449
++ L++ MI +PYGG ++ + E PFP R G LF IQY+ W G+ A
Sbjct: 357 IFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWF-GEGAAALP-T 414
Query: 450 EGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCN--TSYIEAATWGVKYFKENFNRL 507
+ R IYD+M PYVS PR AYVNYRDLDLG+N+ ++Y WG KYFK NF RL
Sbjct: 415 QWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERL 474
Query: 508 VRVKINVDPGNLFRHEQSIPPV 529
R K +DP + FR+EQSIPP+
Sbjct: 475 ARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/504 (41%), Positives = 299/504 (59%), Gaps = 21/504 (4%)
Query: 30 NFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHL 89
+F+ CL IP Y ++P++ SVL + +N R+ P KP +I TP SH+
Sbjct: 10 DFLGCLVKE----IPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHI 65
Query: 90 QAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQA 149
Q+AV+C R + +R RSGGHDYEG+SY S F ++DL K+R++ VD +TAWV +
Sbjct: 66 QSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDS 125
Query: 150 GATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIVD 209
GA +GELYY I + S F AG+CP++ ++RKYG+AA+NV+D ++VD
Sbjct: 126 GAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVD 185
Query: 210 ARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATEI 269
A G++ D+++MG+D FWA+R SFGI++AW+VKL SKT+ +GA +I
Sbjct: 186 ANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDI 245
Query: 270 LYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPEL 329
+ KWQ VA L L IR+I + GPK ++ A++LG + L +M KFPEL
Sbjct: 246 INKWQVVAPQLPADLMIRIIAQ----GPKA------TFEAMYLGTCKTLTPLMSSKFPEL 295
Query: 330 GLTRNDCIEKSWIKSVLYIA-GYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLE 388
G+ + C E SWI+S+ ++ G+ + E ++L + S FK + + KSD+V +P +TV E
Sbjct: 296 GMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNS-FKPFAEYKSDYVYQPFPKTVWE 354
Query: 389 GLWEM-LLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATK 447
+ L++ MI++PYG +S E PFPHRKG LF IQY+ W A
Sbjct: 355 QILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG--AAAA 412
Query: 448 HIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCN--TSYIEAATWGVKYFKENFN 505
+ + IY+YM PYVS PR AY NYRD+DLG N+ N ++Y WG KYFK NF
Sbjct: 413 PLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFE 472
Query: 506 RLVRVKINVDPGNLFRHEQSIPPV 529
RL K VDP + FR+EQSIPP+
Sbjct: 473 RLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 338 bits (867), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/510 (38%), Positives = 273/510 (53%), Gaps = 24/510 (4%)
Query: 29 NNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESH 88
N+ + CLT N + F ++ F L S QN + + KP I P ++
Sbjct: 6 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 89 LQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQ 148
L + C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 149 AGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIV 208
+G+T+GELYY I+E S+ GF AG CP+V M RKYGLAADNVVDA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 209 DARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 267
DA G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 268 EILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFP 327
+L+KWQ VA+ L+E + V+ G ++ V + G FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 295
Query: 328 ELGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAE 384
ELGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPS 350
Query: 385 TVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRT 444
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 351 KAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 410
Query: 445 ATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKY 499
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG Y
Sbjct: 411 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 470
Query: 500 FKENFNRLVRVKINVDPGNLFRHEQSIPPV 529
F N+ RL+R K +DP N+F H QSIPP+
Sbjct: 471 FLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 338 bits (867), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/510 (38%), Positives = 273/510 (53%), Gaps = 24/510 (4%)
Query: 29 NNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESH 88
N+ + CLT N + F ++ F L S QN + + KP I P ++
Sbjct: 6 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 89 LQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQ 148
L + C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV+
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 149 AGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIV 208
+G+T+GELYY I+E S+ GF AG CP+V M RKYGLAADNVVDA ++
Sbjct: 122 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 181
Query: 209 DARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 267
DA G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 182 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 241
Query: 268 EILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFP 327
+L+KWQ VA+ L+E + V+ G ++ V + G FP
Sbjct: 242 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 295
Query: 328 ELGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAE 384
ELGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 296 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPS 350
Query: 385 TVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRT 444
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 351 KAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 410
Query: 445 ATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKY 499
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG Y
Sbjct: 411 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 470
Query: 500 FKENFNRLVRVKINVDPGNLFRHEQSIPPV 529
F N+ RL+R K +DP N+F H QSIPP+
Sbjct: 471 FLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 338 bits (866), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/510 (38%), Positives = 273/510 (53%), Gaps = 24/510 (4%)
Query: 29 NNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESH 88
N+ + CLT N + F ++ F L S QN + + KP I P ++
Sbjct: 25 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 82
Query: 89 LQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQ 148
L + C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV+
Sbjct: 83 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 140
Query: 149 AGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIV 208
+G+T+GELYY I+E S+ GF AG CP+V M RKYGLAADNVVDA ++
Sbjct: 141 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 200
Query: 209 DARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 267
DA G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 201 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 260
Query: 268 EILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFP 327
+L+KWQ VA+ L+E + V+ G ++ V + G FP
Sbjct: 261 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 314
Query: 328 ELGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAE 384
ELGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 315 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPS 369
Query: 385 TVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRT 444
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 370 KAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 429
Query: 445 ATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKY 499
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG Y
Sbjct: 430 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 489
Query: 500 FKENFNRLVRVKINVDPGNLFRHEQSIPPV 529
F N+ RL+R K +DP N+F H QSIPP+
Sbjct: 490 FLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/509 (37%), Positives = 272/509 (53%), Gaps = 24/509 (4%)
Query: 30 NFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHL 89
+ + CLT N + F ++ F L S QN + + KP I P ++ L
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 90 QAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQA 149
+ C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 150 GATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIVD 209
G+T+GELYY I+E S+ GF AG CP+V M RKYGLAADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 210 ARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATE 268
A G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 269 ILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPE 328
+L+KWQ VA+ L+E + V+ G ++ V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 329 LGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAET 385
LGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSK 345
Query: 386 VLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTA 445
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 446 TKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKYF 500
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 501 KENFNRLVRVKINVDPGNLFRHEQSIPPV 529
N+ RL+R K +DP N+F H QSIPP+
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 334 bits (856), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 272/510 (53%), Gaps = 24/510 (4%)
Query: 29 NNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESH 88
N+ + CLT N + F ++ F L S QN + + KP I P ++
Sbjct: 3 NDLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 60
Query: 89 LQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQ 148
L + C R +R RSGG YEG+SY S +TPF L+DL L + +D+ ++TAWV+
Sbjct: 61 LSNTIRCIRKGSWTIRLRSGGASYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVE 118
Query: 149 AGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIV 208
+G+T+GELYY I+E S+ GF AG CP+V M RKYGLAADNVVDA ++
Sbjct: 119 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILI 178
Query: 209 DARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGAT 267
DA G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 179 DANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEAT 238
Query: 268 EILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFP 327
+L+KWQ VA+ L+E + V+ G ++ V + G FP
Sbjct: 239 SLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFP 292
Query: 328 ELGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAE 384
ELGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 293 ELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPS 347
Query: 385 TVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRT 444
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 348 KAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 407
Query: 445 ATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKY 499
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG Y
Sbjct: 408 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESY 467
Query: 500 FKENFNRLVRVKINVDPGNLFRHEQSIPPV 529
F N+ RL+R K +DP N+F H QSIPP+
Sbjct: 468 FLSNYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/509 (37%), Positives = 271/509 (53%), Gaps = 24/509 (4%)
Query: 30 NFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHL 89
+ + CLT N + F ++ F L S QN + + KP I P ++ L
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 90 QAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQA 149
+ C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 150 GATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIVD 209
G+T+GELYY I+E S+ GF AG P+V M RKYGLAADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 210 ARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATE 268
A G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 269 ILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPE 328
+L+KWQ VA+ L+E + V+ G ++ V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 329 LGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAET 385
LGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSK 345
Query: 386 VLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTA 445
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 446 TKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKYF 500
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 501 KENFNRLVRVKINVDPGNLFRHEQSIPPV 529
N+ RL+R K +DP N+F H QSIPP+
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/509 (37%), Positives = 271/509 (53%), Gaps = 24/509 (4%)
Query: 30 NFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHL 89
+ + CLT N + F ++ F L S QN + + KP I P ++ L
Sbjct: 1 DLLSCLTFNG--VRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEEL 58
Query: 90 QAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQA 149
+ C R +R RSGGH YEG+SY S +TPF L+DL L + +D+ ++TAWV++
Sbjct: 59 SNTIRCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVES 116
Query: 150 GATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARIVD 209
G+T+GELYY I+E S+ GF AG P+V M RKYGLAADNVVDA ++D
Sbjct: 117 GSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILID 176
Query: 210 ARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGATE 268
A G ILDR+AMGED+FWAIR +G I AWK+KL +K + AT
Sbjct: 177 ANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS 236
Query: 269 ILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPE 328
+L+KWQ VA+ L+E + V+ G ++ V + G FPE
Sbjct: 237 LLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPE 290
Query: 329 LGLTRNDCIEKSWIKSVLYIAGYPNYTEPE---ILLEERSLFKSYFKAKSDFVKEPIAET 385
LGL D +E SW +S Y+AG ++ + +ER+ FK K D KEP+
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSK 345
Query: 386 VLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTA 445
GL E L + + + N +GG MSKIS PFPHR G ++Y+ W + +
Sbjct: 346 AFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 446 TKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG----MNKKCNTSYIEAA-TWGVKYF 500
T+ ++ + ++Y++M P+VS PR YVN+ DLDLG NK + IE + +WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 501 KENFNRLVRVKINVDPGNLFRHEQSIPPV 529
N+ RL+R K +DP N+F H QSIPP+
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 110/487 (22%), Positives = 199/487 (40%), Gaps = 56/487 (11%)
Query: 76 KPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFF--LLDLAKL 133
+P+ ++ T + AV + + RSGGH +EG ++ P ++D++++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 134 RSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMR 193
R + D + V+ GAT+GE Y + + AG+CP V + R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 194 KYGLAADNV--VDARIVDARGR---ILDREAMGE---DLFWAIRXXXXXSFGIILAWKVK 245
+ G+ AD++ V+ +VDA GR ++ A + +L+WA +FGI+ +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIV----TR 224
Query: 246 LXXXXXXXXXXXXSKTLEQGATEIL---YKWQQVADNLDEHLFIRVIIKLA--NTGPKGK 300
S+ L + T L W A L E F R+I +
Sbjct: 225 YWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAA 282
Query: 301 RTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAG----YPNYTE 356
T S +++F ++ Q++ + GL + + ++ +V G TE
Sbjct: 283 GTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTE 342
Query: 357 PEILLEERSLFKS----YFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWN-----PY 407
P + + F + K+K ++++P L+ L +W Y
Sbjct: 343 PWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSA---DSQVWGEVSLYSY 399
Query: 408 GGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFP 467
GG ++ + E R ++ K+ W D + A ++ IR IY + P
Sbjct: 400 GGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDA--NLAWIREIYREIFATTGGVP 456
Query: 468 ------RAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFR 521
++NY D+DL ++++ NTS + W Y+K N+ RL +VK DP ++FR
Sbjct: 457 VPDDRTEGTFINYPDVDL-VDERWNTSGVP---WYTLYYKGNYPRLQKVKARWDPRDVFR 512
Query: 522 HEQSIPP 528
H S+ P
Sbjct: 513 HALSVRP 519
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/472 (23%), Positives = 188/472 (39%), Gaps = 55/472 (11%)
Query: 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI 136
P I T +H+Q+AV C++ L + + A+SGGH Y + E ++ L ++ +
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGG--ENGHLMVQLDRMIDV 94
Query: 137 EVDINNKT--AWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRK 194
+ N+KT A V+ GA +G L +++K + G CP V
Sbjct: 95 -ISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHM 152
Query: 195 YGLAADNVVDARIVDARGRILDREAM-GEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXX 253
+GLA D+VV +V A GRI++ A DLFW I+ +FGI+ W KL
Sbjct: 153 HGLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVW--KLATFPAPK 209
Query: 254 XXXXXSKTLE-QGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFL 312
TL + T L + V D V ++ + G L+
Sbjct: 210 VLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAG-----NPGIEGLYY 264
Query: 313 GDAERLLQVMHKKFPEL--GLTRNDCIEKSWIKSVLYIAGYP--NYTEPEILLEERSLFK 368
G E+ L G N +WI+SVL + + ++ P+ + +
Sbjct: 265 GTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSL 324
Query: 369 SYFKAKSDFVKE------PIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFP 422
+ K D VK ++ V + W L+ H + ++K++ E +P
Sbjct: 325 TLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGK------NSQVTKVTNAETAYP 378
Query: 423 HRKGNLFKIQYLTGWKDGDN--RTATKHIEGIRRIYDYMAPYVSMFPRA---AYVNYRDL 477
HR L+ IQ+ + + T+ K ++G ++ P++ Y+NY D
Sbjct: 379 HRD-KLWLIQFYDRYDNNQTYPETSFKFLDG------WVNSVTKALPKSDWGMYINYADP 431
Query: 478 DLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPV 529
+ + Y+ EN RL ++K DP + F + Q++ PV
Sbjct: 432 RMDRDYATKV-----------YYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 125/532 (23%), Positives = 224/532 (42%), Gaps = 69/532 (12%)
Query: 33 KCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAA 92
+CL V + TP++P +L+ L+ N R+ +P++I L S Q A
Sbjct: 25 RCLPPAGPVKV------TPDDPRYLN-LKLRGANSRF----NGEPDYIH--LVGSTQQVA 71
Query: 93 VICSRHLRIHLRA--RSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAG 150
+R R RSGGH +E ++ ++D++ L I D + ++ G
Sbjct: 72 DAVEETVRTGKRVAVRSGGHCFEDFVDNPDVK---VIIDMSLLTEIAYDPSMNAFLIEPG 128
Query: 151 ATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNV--VDARIV 208
T+ E+Y ++ N+ G+C V + R++G D + V+ +V
Sbjct: 129 NTLSEVYEKLYLGWNVT-IPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVV 187
Query: 209 DARGR------ILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTL 262
+ +G+ +R+ DL+WA +FG++ + +++ K
Sbjct: 188 NKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPP 247
Query: 263 EQGATE-ILYKWQQVADNLDEHLFIRVIIKLA-----NTGPKGKRTVTTSYNALFLGDAE 316
T + + W + E F R++ N+GP T ++ L +G+
Sbjct: 248 ATLLTSTVTFDWA----GMTEAAFSRLLRNHGEWYERNSGPDSP--YTGLWSQLMIGNEV 301
Query: 317 RLLQVMHKKFP-ELGLTRNDC--IEKSWIKSVLYIAGYPNYTEPEILLEERSLFKS---- 369
+ P ++ TR D + + I++V I G P PE + E+R L +
Sbjct: 302 PGMGESGFMMPIQVDATRPDARRLLDAHIEAV--IDGVPPAEVPEPI-EQRWLASTPGRG 358
Query: 370 ----YFKAKSDFVKEPIAETVLEGLWEML--LEGHDPEMIW-NPYGGMMSKISEYEIPFP 422
K K+ ++++ + + ++ ++E + ++G D +W YGG ++ + P
Sbjct: 359 GRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALP 418
Query: 423 HRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIY-DYMA-----PYVSMFPRAAYVNYRD 476
R + K+ Y+TGW + N KH+ +R++Y D A P + AY+NY D
Sbjct: 419 QRDA-ILKVNYITGWANPGNEA--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPD 475
Query: 477 LDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPP 528
DL + NTS + W Y+K N RL +VK DP N F H SI P
Sbjct: 476 SDLA-DPGLNTSGV---PWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 131/515 (25%), Positives = 207/515 (40%), Gaps = 83/515 (16%)
Query: 64 AQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRA--RSGGHDYEGVSYVSQI 121
+NLR++ PE I L S + + SR +R R RSGGH YE S +
Sbjct: 50 GENLRFV----GDPEEIH--LVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV 103
Query: 122 ETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXX 181
++D+++L ++ D V+AGAT+G +Y + + G CP V
Sbjct: 104 R---VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGG 159
Query: 182 XXXXXXXXXMMRKYGLAAD--NVVDARIVDARGR----ILDREAM--GEDLFWAIRXXXX 233
+ R +G D + V+ +VDA G I RE DL+WA
Sbjct: 160 HILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGG 219
Query: 234 XSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATEIL-----YKWQQVADNLDEHLFIRV 288
+FG+++ + ++ + L + E+L + W+ LDE F R+
Sbjct: 220 GNFGVVVRYWLR---TAEADVPPEPGRLLPRPPAEVLLNTTVWPWE----GLDEAAFARL 272
Query: 289 IIKLA-----NTGP-----------------KGKRTVTTSYNALFLGDAERLLQVMHKKF 326
+ N+GP G +TT +A DAE+ L+
Sbjct: 273 VRNHGRWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGP-DAEKRLETYLAAV 331
Query: 327 PE-LGLT-RNDCIEKSWIKSVLY--IAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPI 382
E +G+ +D W+ S + IAG + T R+ K+ + A+ F I
Sbjct: 332 SEGVGVQPHSDTRRLPWLHSTRWPGIAGDGDMTG-------RAKIKAAY-ARRSFDDRQI 383
Query: 383 AETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDN 442
T+ L + + YGG ++ + R ++ KI Y+T W+D
Sbjct: 384 G-TLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTWEDPAQ 441
Query: 443 RTATKHIEGIRRIY-DYMA-----PYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWG 496
H+ IR +Y D A P AYVNY D+DL +++ NTS + W
Sbjct: 442 DPV--HVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLA-DEEWNTSGV---PWS 495
Query: 497 VKYFKENFNRLVRVKINVDPGNLFRHEQS--IPPV 529
Y+K+ + RL VK DP N+FRH S +PP
Sbjct: 496 ELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPPA 530
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 116/522 (22%), Positives = 198/522 (37%), Gaps = 87/522 (16%)
Query: 53 NPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTE----SHLQAAVICSRHLRIHLRARSG 108
+P ++ + S + N R++V +PE F P T + LQ AV R + RSG
Sbjct: 17 DPRYIEL--SHSDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVAC----RSG 66
Query: 109 GHDYEGVSYVSQIETPF--FLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNI 166
GH G +V TP +LDL L +I + V +GAT+ ++ + + N
Sbjct: 67 GH--CGQDFVG---TPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA 121
Query: 167 HGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNV--VDARIVD-------ARGRILDR 217
G C +V + R+ GL D++ V+ +VD R D
Sbjct: 122 -ALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDT 180
Query: 218 EAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLEQGATEILYKWQQVA 277
+GE LFWA +FG++ A++ + ++++ W +
Sbjct: 181 GDLGE-LFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI- 238
Query: 278 DNLDEHLFIRVIIKLAN--------TGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPE- 328
DE F+ V+ + P+ T N + G + ++Q PE
Sbjct: 239 ---DETSFVTVMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEG 295
Query: 329 ----------------LGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFK 372
+G+ R + SW+ Y+ + + ++ RS KS +
Sbjct: 296 EILARFVASLTEGTGVVGIPRGGVM--SWLTGTRYM----SQADCGDVMGARSASKSAYH 349
Query: 373 AKSDFVKEPIAE--TVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFK 430
+ P E +VL G +++N YGG +++ + P R ++ K
Sbjct: 350 RAA-----PTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVK 403
Query: 431 IQYLTGWKDGDNRTATKHIEGIRRIYD------YMAPYVSMFPRAAYVNYRDLDLGMNKK 484
+ + W+D + H+ +R +Y+ P Y+NY D DL ++
Sbjct: 404 SSWFSAWQDAE--LDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPA 460
Query: 485 CNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSI 526
N S W Y+K+N+ RL K DP N F H SI
Sbjct: 461 RNRS---GEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 108/501 (21%), Positives = 186/501 (37%), Gaps = 66/501 (13%)
Query: 60 LESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVS 119
++ +A NLR P I P + + AAV C + + A+ GGH Y +
Sbjct: 30 MDGTAFNLRVDY----DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85
Query: 120 QIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXX 179
E +L+L ++ + VD NN A +Q GA +G + ++ N + G CP+V
Sbjct: 86 --EDGHLMLELDRMYRVSVDDNN-VATIQGGARLGYTALELLDQGN-RALSHGTCPAVGV 141
Query: 180 XXXXXXXXXXXMMRKYGLAADNVVDARIVDARGRILD-REAMGEDLFWAIRXXXXXSFGI 238
+GL D ++ A +V A I+ E DLFWA+R F I
Sbjct: 142 GGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALR-GGGGGFAI 200
Query: 239 ILAWKVKLXXXXXXXXXXXXSKTLEQ----GATEILYKWQQVADNLDEHLFIRVIIKLAN 294
+ ++ + T + + L W Q + + L +R+ I
Sbjct: 201 VSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANA 258
Query: 295 TGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELG--LTRNDCIEKSW---IKSVLYIA 349
+G F G+A+ L +++ + G T + +E W I + LY A
Sbjct: 259 LNWEGN----------FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA 308
Query: 350 GYP---NYTEPEIL----LEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEM 402
NY E L L +A D+ + + G W +
Sbjct: 309 DLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------I 358
Query: 403 IWNPYGG---MMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYM 459
W+ +GG ++ +S E + HR L+ Q+ D +N T+ G + ++
Sbjct: 359 QWDFHGGKNSALAAVSNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFV 417
Query: 460 APYVSMFP---RAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDP 516
A P + Y NY D L + Y++ N +L +K DP
Sbjct: 418 ATIEDTLPEDRKGKYFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDP 466
Query: 517 GNLFRHEQSIPPVPMESMQLM 537
++F + S+ P+ +L+
Sbjct: 467 EDVFGNVVSVEPIAYLEQKLI 487
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 117/477 (24%), Positives = 183/477 (38%), Gaps = 78/477 (16%)
Query: 74 MPKPEFIFTPLTESHLQAAV--ICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLA 131
+ +P I L+ + +V C L I +R SGGH+ G + +LDL
Sbjct: 36 LQRPSLIARCLSAGDVAKSVRYACDNGLEISVR--SGGHNPNGYA----TNDGGIVLDLR 89
Query: 132 KLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAA--GLCPSVXXXXXXXXXXXX 189
+ SI +D A + G G+L ++ G AA G+ P V
Sbjct: 90 LMNSIHIDTAGSRARIGGGVISGDLVKEAAK----FGLAAVTGMHPKVGFCGLALNGGVG 145
Query: 190 XMMRKYGLAADNVVDARIVDARGRIL---DREAMGEDLFWAIRXXXXXSFGIILAWKVKL 246
+ KYGLA+DN++ A +V A G ++ D E +LFWA+R +FG++ +V+L
Sbjct: 146 FLTPKYGLASDNILGATLVTATGDVIYCSDDER--PELFWAVR-GAGPNFGVVTEVEVQL 202
Query: 247 XXXXXXXXXXXXS-----KTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKR 301
+ L T +L ++AD++ +F+ V N P
Sbjct: 203 YELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVD---ENRAP---- 255
Query: 302 TVTTSYNAL-FLGDAERLLQVMHKKFPELGLTRNDCIE-KSWIKSVLYIA-------GYP 352
+VT L L AER + + LG T +D I +S+ + V A G
Sbjct: 256 SVTVCVGHLGGLDIAERDIA----RLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMS 311
Query: 353 N-YTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMM 411
N + + EI + ++ FV EP + G ++ +EG P+G
Sbjct: 312 NLWIDREIAMPNARFAEAIAGNLDKFVSEPAS----GGSVKLEIEGM-------PFG--- 357
Query: 412 SKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAY 471
+ P HR + + L W G + K+ E R + AA
Sbjct: 358 ---NPKRTPARHR--DAMGVLALAEWS-GAAPGSEKYPELAREL------------DAAL 399
Query: 472 VNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPP 528
+ G N S + A Y E ++RL VK DP N FRH +I P
Sbjct: 400 LRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 107/501 (21%), Positives = 185/501 (36%), Gaps = 66/501 (13%)
Query: 60 LESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVS 119
++ +A NLR P I P + + AAV C + + A+ GGH Y +
Sbjct: 30 MDGTAFNLRVDY----DPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85
Query: 120 QIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXX 179
E +L+L ++ + VD NN A +Q GA +G + ++ N + G P+V
Sbjct: 86 --EDGHLMLELDRMYRVSVDDNN-VATIQGGARLGYTALELLDQGN-RALSHGTAPAVGV 141
Query: 180 XXXXXXXXXXXMMRKYGLAADNVVDARIVDARGRILD-REAMGEDLFWAIRXXXXXSFGI 238
+GL D ++ A +V A I+ E DLFWA+R F I
Sbjct: 142 GGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALR-GGGGGFAI 200
Query: 239 ILAWKVKLXXXXXXXXXXXXSKTLEQ----GATEILYKWQQVADNLDEHLFIRVIIKLAN 294
+ ++ + T + + L W Q + + L +R+ I
Sbjct: 201 VSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEINANA 258
Query: 295 TGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELG--LTRNDCIEKSW---IKSVLYIA 349
+G F G+A+ L +++ + G T + +E W I + LY A
Sbjct: 259 LNWEGN----------FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGA 308
Query: 350 GYP---NYTEPEIL----LEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEM 402
NY E L L +A D+ + + G W +
Sbjct: 309 DLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------I 358
Query: 403 IWNPYGG---MMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYM 459
W+ +GG ++ +S E + HR L+ Q+ D +N T+ G + ++
Sbjct: 359 QWDFHGGKNSALAAVSNDETAYAHRD-QLWLWQFYDSIYDYENNTSPYPESGFEFMQGFV 417
Query: 460 APYVSMFP---RAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDP 516
A P + Y NY D L + Y++ N +L +K DP
Sbjct: 418 ATIEDTLPEDRKGKYFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDP 466
Query: 517 GNLFRHEQSIPPVPMESMQLM 537
++F + S+ P+ +L+
Sbjct: 467 EDVFGNVVSVEPIAYLEQKLI 487
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 58 SVLESSAQNLRYLVPSMP------KPEFIFTPLTESHLQAAV-ICSRHLRIHLRARSGGH 110
+VL S Q + Y MP P T T +Q V IC+ H +I + S G
Sbjct: 33 NVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH-KIPIWTISTGR 91
Query: 111 DYEGVSYVSQIETPFFLLDLAKL-RSIEVDINNKTAWVQAGATIGELYYRISEKS 164
++ G + ++ +LDL K+ + I++D A V+ G T G++Y I E +
Sbjct: 92 NF-GYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 58 SVLESSAQNLRYLVPSMP------KPEFIFTPLTESHLQAAV-ICSRHLRIHLRARSGGH 110
+VL S Q + Y MP P T T +Q V IC+ H +I + S G
Sbjct: 32 NVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH-KIPIWTISTGR 90
Query: 111 DYEGVSYVSQIETPFFLLDLAKL-RSIEVDINNKTAWVQAGATIGELYYRISEKS 164
++ G + ++ +LDL K+ + I++D A V+ G T G++Y I E +
Sbjct: 91 NF-GYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 79 FIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEV 138
+ P + + A + R+ L + G G E L K+R E+
Sbjct: 54 LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIR--EI 111
Query: 139 DINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLA 198
D ++ T V+AGA + + + +E + + G S YGLA
Sbjct: 112 DTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171
Query: 199 ADNVVDARIVDARGRI------LDREAMG---EDLFWAIRXXXXXSFGIILAWKVKL 246
D + +V A GR+ L ++ G DLF + GII A +KL
Sbjct: 172 RDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAE----GTLGIITAATLKL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,197,834
Number of Sequences: 62578
Number of extensions: 607605
Number of successful extensions: 1336
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 26
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)