Query 046361
Match_columns 539
No_of_seqs 282 out of 2228
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 8E-39 1.7E-43 341.3 43.4 193 67-266 55-258 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 3.2E-33 7E-38 296.1 32.9 197 68-278 6-205 (438)
3 COG0277 GlcD FAD/FMN-containin 100.0 1.6E-32 3.4E-37 295.7 30.3 187 73-264 28-221 (459)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 1.9E-31 4.2E-36 282.3 32.7 195 68-278 3-199 (419)
5 PLN02805 D-lactate dehydrogena 100.0 1E-32 2.3E-37 298.6 22.7 192 75-272 132-330 (555)
6 TIGR01676 GLDHase galactonolac 100.0 2.6E-32 5.6E-37 291.0 22.5 196 68-277 53-251 (541)
7 PRK11230 glycolate oxidase sub 100.0 6.9E-32 1.5E-36 290.7 23.2 196 73-272 52-253 (499)
8 TIGR01677 pln_FAD_oxido plant- 100.0 4.4E-31 9.4E-36 285.4 23.6 182 68-253 23-215 (557)
9 KOG1231 Proteins containing th 100.0 1.5E-29 3.2E-34 254.9 24.1 174 73-251 60-240 (505)
10 TIGR00387 glcD glycolate oxida 100.0 2.7E-30 5.9E-35 273.7 19.4 190 80-273 1-197 (413)
11 PRK11282 glcE glycolate oxidas 100.0 1.5E-29 3.3E-34 259.3 19.4 170 85-261 3-181 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.4E-28 3E-33 264.6 23.2 177 68-253 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 5.3E-27 1.1E-31 211.6 12.8 136 77-216 1-137 (139)
14 PRK11183 D-lactate dehydrogena 99.9 4E-24 8.6E-29 224.9 17.5 197 74-274 36-290 (564)
15 KOG4730 D-arabinono-1, 4-lacto 99.9 3.2E-23 6.8E-28 209.3 15.5 182 69-258 42-226 (518)
16 PRK13905 murB UDP-N-acetylenol 99.9 2.3E-23 5.1E-28 211.0 12.7 163 74-250 28-193 (298)
17 KOG1232 Proteins containing th 99.9 2.3E-23 5E-28 205.3 11.7 189 64-256 77-272 (511)
18 KOG1233 Alkyl-dihydroxyacetone 99.9 2.9E-21 6.4E-26 190.7 14.9 194 69-263 153-353 (613)
19 PRK12436 UDP-N-acetylenolpyruv 99.8 2.2E-20 4.7E-25 189.1 13.2 162 73-249 33-197 (305)
20 PRK14652 UDP-N-acetylenolpyruv 99.8 3.9E-20 8.4E-25 186.9 13.8 163 73-250 32-196 (302)
21 TIGR00179 murB UDP-N-acetyleno 99.8 3E-20 6.4E-25 186.6 12.8 162 74-248 10-174 (284)
22 PRK13903 murB UDP-N-acetylenol 99.8 4.9E-20 1.1E-24 189.3 14.7 164 73-249 29-196 (363)
23 PRK13906 murB UDP-N-acetylenol 99.8 7.1E-20 1.5E-24 185.4 13.1 161 75-249 35-197 (307)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 6.3E-18 1.4E-22 170.4 15.9 165 73-249 17-192 (295)
25 PF08031 BBE: Berberine and be 99.7 3.7E-17 8.1E-22 117.9 3.7 47 470-527 1-47 (47)
26 PRK14653 UDP-N-acetylenolpyruv 99.7 5.7E-16 1.2E-20 155.7 12.9 160 74-249 31-193 (297)
27 COG0812 MurB UDP-N-acetylmuram 99.6 6.4E-15 1.4E-19 145.3 13.7 165 73-249 17-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 1.4E-14 3E-19 145.3 12.6 165 73-250 29-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 1.5E-14 3.3E-19 147.1 11.6 163 73-249 17-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.5 1.1E-13 2.3E-18 140.7 12.9 167 73-249 26-236 (354)
31 KOG1262 FAD-binding protein DI 99.5 7E-14 1.5E-18 139.1 8.2 126 126-253 104-232 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.3 1.1E-11 2.4E-16 122.7 11.4 149 76-249 20-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.0 2.4E-09 5.1E-14 105.2 10.0 143 75-250 17-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.2 0.045 9.7E-07 51.0 6.4 78 77-159 2-80 (171)
35 PRK09799 putative oxidoreducta 94.8 0.089 1.9E-06 52.4 7.6 140 79-245 4-155 (258)
36 PRK09971 xanthine dehydrogenas 94.2 0.15 3.3E-06 51.7 7.8 103 79-187 6-119 (291)
37 TIGR03312 Se_sel_red_FAD proba 93.6 0.23 4.9E-06 49.5 7.6 144 80-245 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 92.2 0.5 1.1E-05 51.2 8.3 152 77-246 192-358 (467)
39 PF09265 Cytokin-bind: Cytokin 91.5 0.1 2.2E-06 52.1 1.9 33 493-526 248-280 (281)
40 PLN00107 FAD-dependent oxidore 91.4 0.6 1.3E-05 45.9 7.0 27 495-523 171-197 (257)
41 TIGR03195 4hydrxCoA_B 4-hydrox 89.6 0.56 1.2E-05 48.2 5.4 104 77-186 4-117 (321)
42 TIGR03199 pucC xanthine dehydr 87.8 1.2 2.6E-05 44.4 6.4 98 83-186 1-109 (264)
43 PLN02906 xanthine dehydrogenas 84.3 2.1 4.5E-05 52.4 7.0 80 77-162 228-309 (1319)
44 PF02913 FAD-oxidase_C: FAD li 82.0 2.5 5.4E-05 40.9 5.4 27 495-521 217-244 (248)
45 PF04030 ALO: D-arabinono-1,4- 81.8 1.1 2.3E-05 44.6 2.8 28 494-523 227-254 (259)
46 PLN00192 aldehyde oxidase 81.3 3.9 8.4E-05 50.2 7.7 107 77-186 233-352 (1344)
47 TIGR02969 mam_aldehyde_ox alde 78.9 5.9 0.00013 48.6 8.2 78 78-161 237-316 (1330)
48 TIGR01677 pln_FAD_oxido plant- 74.5 5.1 0.00011 44.4 5.5 28 494-523 476-503 (557)
49 COG4630 XdhA Xanthine dehydrog 74.2 7.9 0.00017 40.0 6.2 141 76-229 202-352 (493)
50 COG1319 CoxM Aerobic-type carb 69.6 14 0.00031 37.2 6.9 76 77-157 3-80 (284)
51 TIGR00387 glcD glycolate oxida 58.3 7.4 0.00016 41.5 2.7 28 494-521 382-410 (413)
52 PLN02805 D-lactate dehydrogena 57.8 23 0.00049 39.4 6.4 29 494-522 516-545 (555)
53 PRK11230 glycolate oxidase sub 57.4 21 0.00045 39.2 6.0 31 494-524 439-470 (499)
54 COG4981 Enoyl reductase domain 54.5 33 0.00071 37.4 6.6 77 30-114 112-196 (717)
55 KOG4730 D-arabinono-1, 4-lacto 47.7 10 0.00023 40.2 1.7 21 502-522 485-505 (518)
56 PRK11282 glcE glycolate oxidas 42.4 16 0.00035 38.1 2.1 21 501-521 323-344 (352)
57 PF02601 Exonuc_VII_L: Exonucl 36.8 47 0.001 33.9 4.5 56 48-110 20-87 (319)
58 COG0351 ThiD Hydroxymethylpyri 35.0 1.2E+02 0.0027 30.2 6.8 108 25-164 115-225 (263)
59 COG1519 KdtA 3-deoxy-D-manno-o 34.7 2.4E+02 0.0053 30.0 9.3 34 76-109 260-293 (419)
60 PRK00286 xseA exodeoxyribonucl 33.5 49 0.0011 35.6 4.2 55 48-109 141-203 (438)
61 KOG3282 Uncharacterized conser 32.5 59 0.0013 30.4 3.9 36 68-105 118-153 (190)
62 cd07033 TPP_PYR_DXS_TK_like Py 25.9 94 0.002 28.1 4.1 30 78-107 125-154 (156)
63 COG4359 Uncharacterized conser 25.6 74 0.0016 30.0 3.2 25 89-113 78-102 (220)
64 PLN02465 L-galactono-1,4-lacto 24.9 42 0.00091 37.4 1.9 28 493-523 537-564 (573)
65 TIGR01676 GLDHase galactonolac 24.9 42 0.00092 37.1 1.9 26 495-523 509-534 (541)
66 cd02429 PTH2_like Peptidyl-tRN 23.8 1.5E+02 0.0032 25.7 4.6 35 68-106 51-85 (116)
67 TIGR00237 xseA exodeoxyribonuc 22.6 56 0.0012 35.1 2.3 61 48-110 135-199 (432)
68 PF02779 Transket_pyr: Transke 22.5 1.3E+02 0.0027 27.9 4.4 32 78-109 139-172 (178)
69 COG2144 Selenophosphate synthe 21.9 2E+02 0.0043 29.2 5.6 52 44-108 238-290 (324)
70 PF12108 SF3a60_bindingd: Spli 20.7 70 0.0015 20.3 1.5 12 502-513 11-22 (28)
71 PF03941 INCENP_ARK-bind: Inne 20.2 37 0.00081 25.3 0.2 36 493-534 19-54 (57)
72 COG1570 XseA Exonuclease VII, 20.0 63 0.0014 34.5 1.9 55 48-109 141-204 (440)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=8e-39 Score=341.25 Aligned_cols=193 Identities=20% Similarity=0.262 Sum_probs=172.4
Q ss_pred cccCCCCCCCceEEEecCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCc------E-E
Q 046361 67 LRYLVPSMPKPEFIFTPLTESHLQAAVICSR--HLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRS------I-E 137 (539)
Q Consensus 67 ~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~------v-~ 137 (539)
..|.......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|++... ++++|||++||+ + +
T Consensus 55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~ 130 (525)
T PLN02441 55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIV 130 (525)
T ss_pred cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEE
Confidence 3587777789999999999999999999997 6699999999999999988765 589999999999 4 7
Q ss_pred EeCCCCEEEEeCCCCHHHHHHHHHhcCCceEee-cCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec
Q 046361 138 VDINNKTAWVQAGATIGELYYRISEKSNIHGFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD 216 (539)
Q Consensus 138 vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~ 216 (539)
+|.+..+|+|++|++|.++.+++.++|+ +.+ .+.+..++|||.++++|.|..+.+||..+|+|+++|||+++|++++
T Consensus 131 vd~~~~~VtV~aG~~~~dv~~~l~~~Gl--aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~ 208 (525)
T PLN02441 131 VSGDGPYVDVSGGELWIDVLKATLKHGL--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT 208 (525)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHCCC--ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence 8889999999999999999999999974 332 3666789999999999999999999999999999999999999997
Q ss_pred -ccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhH
Q 046361 217 -REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGA 266 (539)
Q Consensus 217 -~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~ 266 (539)
++.+|+|||||++||+ |+|||||++++|++|+|+...++.+.+...+.+
T Consensus 209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~ 258 (525)
T PLN02441 209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFSTF 258 (525)
T ss_pred eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHHH
Confidence 6678999999999998 899999999999999999877777777654433
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.2e-33 Score=296.13 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=171.5
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAW 146 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~ 146 (539)
+|+.+....|.+|+.|+|++||+++|++|++++++|+++|+|||+++.+.. ++++|||++||+| ++|+++++|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-----~gvvIdl~~l~~i~~id~~~~~vt 80 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-----DGFLIHLDKMNKVLQFDKEKKQIT 80 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-----CeEEEEhhhcCCceEEcCCCCEEE
Confidence 488888889999999999999999999999999999999999999876543 4799999999998 9999999999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEee-cCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcch
Q 046361 147 VQAGATIGELYYRISEKSNIHGFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDL 224 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 224 (539)
|+||+++.+|.+.|.++|+ .++ .|.++.++|||++++|+||. +.+||..+|+|+++++|++||++++ +..+++||
T Consensus 81 V~aG~~l~~L~~~L~~~Gl--~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 81 VEAGIRLYQLHEQLDEHGY--SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EcCCCCHHHHHHHHHHcCC--EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 9999999999999999984 455 48889999999999999997 6899999999999999999999997 66678999
Q ss_pred hhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHHHHHHhh
Q 046361 225 FWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVAD 278 (539)
Q Consensus 225 f~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (539)
||+.+|+. |+|||||++|||++|........ .. ....++++.|++...
T Consensus 158 f~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 158 FQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHhh
Confidence 99999998 89999999999999976543322 11 224566777776543
No 3
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.6e-32 Score=295.67 Aligned_cols=187 Identities=29% Similarity=0.379 Sum_probs=165.3
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGA 151 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~ 151 (539)
....|.+|+.|+|++||+++|++|+++++||++||+|||+.|.+.+. ++++|||++||+| ++|+++++|+|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~----~gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD----GGVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC----CcEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 34589999999999999999999999999999999999999888765 2799999999999 899999999999999
Q ss_pred CHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec--c----cCCCcchh
Q 046361 152 TIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD--R----EAMGEDLF 225 (539)
Q Consensus 152 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~--~----~~~~~dLf 225 (539)
++.+|.++|.++|+.+++.+++...++|||++++|++|..+.+||.+.|+|+++++|++||++++ . +..+.||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999986554444555589999999999999999999999999999999999999996 1 24458999
Q ss_pred hhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchh
Q 046361 226 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQ 264 (539)
Q Consensus 226 ~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~ 264 (539)
+++.|+. |+|||||++++|++|.|+........+...+
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~ 221 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPSIE 221 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCCHH
Confidence 9999887 8999999999999999887666565555443
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.9e-31 Score=282.27 Aligned_cols=195 Identities=22% Similarity=0.309 Sum_probs=163.7
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAW 146 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~ 146 (539)
+|+.+....|.+|++|+|++||+++|+.|++ +|+++|+|||+.+.+.. ++++|||++||+| ++|+++++|+
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-----~g~~idl~~l~~i~~~d~~~~~v~ 74 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-----DGTMISLTGLQGVVDVDQPTGLAT 74 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-----CCEEEEhhHcCCceeecCCCCEEE
Confidence 3888778899999999999999999999974 79999999999876542 4699999999998 9999999999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcchh
Q 046361 147 VQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDLF 225 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf 225 (539)
||||+++.+|.+.|.++|+.++. .|.+..++|||.+++|+||.. .+||..+|+|++++||++||++++ ++.+|+|||
T Consensus 75 v~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf 152 (419)
T TIGR01679 75 VEAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMY 152 (419)
T ss_pred EcCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHH
Confidence 99999999999999999854322 255667899999999999975 689999999999999999999997 666789999
Q ss_pred hhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHHHHHHhh
Q 046361 226 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVAD 278 (539)
Q Consensus 226 ~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (539)
||+|||+ |+|||||++|||++|.+........ .+ ..++++.+.++..
T Consensus 153 ~a~~g~~-G~lGVIt~vtl~~~p~~~~~~~~~~-~~----~~~~~~~~~~~~~ 199 (419)
T TIGR01679 153 LAARVSL-GALGVISQVTLQTVALFRLRRRDWR-RP----LAQTLERLDEFVD 199 (419)
T ss_pred HHHHhCC-CceEEEEEEEEEeecceEeEEEEEe-cC----HHHHHHHHHHHHh
Confidence 9999998 8999999999999998754333211 11 2345555666544
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1e-32 Score=298.63 Aligned_cols=192 Identities=20% Similarity=0.323 Sum_probs=170.4
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCH
Q 046361 75 PKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATI 153 (539)
Q Consensus 75 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~ 153 (539)
..|.+|++|+|++||+++|++|+++++||++||||||+.|.+... +++++|||++||+| ++|+++.+|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~---~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAP---HGGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCC---CCEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 479999999999999999999999999999999999999887654 36899999999998 79999999999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceecc------cCCCcchhhh
Q 046361 154 GELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDR------EAMGEDLFWA 227 (539)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~------~~~~~dLf~a 227 (539)
.+|+++|.++|+ .+++..++.++|||+++++++|..+.+||.++|+|+++|||++||++++. ...++||+|+
T Consensus 209 ~~L~~~L~~~Gl--~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcCC--EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 999999999974 56666667789999999999999999999999999999999999999951 1246899999
Q ss_pred hhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHH
Q 046361 228 IRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYK 272 (539)
Q Consensus 228 ~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 272 (539)
++|+. |+|||||+++||++|.|+......+.|+..+++.+++..
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99998 899999999999999999877777777765555555443
No 6
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.6e-32 Score=290.96 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=170.9
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAW 146 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~ 146 (539)
+|+.+....|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +.+|||++||+| ++|+++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~-----g~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR-----AGMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC-----CeEEEhhhCCCCEEEcCCCCEEE
Confidence 4999999999999999999999999999999999999999999999877654 357999999997 9999999999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEeec-CCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcch
Q 046361 147 VQAGATIGELYYRISEKSNIHGFAA-GLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDL 224 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 224 (539)
|+||+++.+|.+.|.++|+ +++. |.+..++|||++++|+||.. .+||..+|+|++++||+++|++++ +..+|+||
T Consensus 128 V~AG~~l~~L~~~L~~~Gl--al~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdL 204 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYGI--TLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPEL 204 (541)
T ss_pred EcCCCCHHHHHHHHHHcCC--EeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHH
Confidence 9999999999999999974 4554 88899999999999999986 479999999999999999999997 66678999
Q ss_pred hhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHHHHHHh
Q 046361 225 FWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVA 277 (539)
Q Consensus 225 f~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (539)
|||+|||. |+|||||++|||+.|.+..... ....+ ..++++.+.++.
T Consensus 205 F~Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 205 FFLARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 99999998 8999999999999999874322 11222 345566666654
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=6.9e-32 Score=290.71 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=170.3
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGA 151 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~ 151 (539)
.+..|.+|++|+|++||+++|++|+++++||++||+||++.|.+.+. .++++|||++||+| ++|+++++|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~---~~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL---EKGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC---CCcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 35689999999999999999999999999999999999998776654 25799999999998 999999999999999
Q ss_pred CHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceecc-----cCCCcchhh
Q 046361 152 TIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDR-----EAMGEDLFW 226 (539)
Q Consensus 152 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~-----~~~~~dLf~ 226 (539)
++.+|.++|.++|+.+...+++...++|||++++++.|..+.+||.+.|+|+++|||++||++++. +..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 999999999999864333345556789999999999999999999999999999999999999972 134789999
Q ss_pred hhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHH
Q 046361 227 AIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYK 272 (539)
Q Consensus 227 a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~ 272 (539)
+++|+. |+|||||++|||++|.|+....+.+.|+..+++.+++..
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 999998 899999999999999999877777777655444444433
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=4.4e-31 Score=285.41 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=160.5
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEe-CCCCCCCCccccCCCCCeEEEEcCCCCc-EEEeCCCCEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARS-GGHDYEGVSYVSQIETPFFLLDLAKLRS-IEVDINNKTA 145 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~g-gGh~~~g~s~~~~~~~~~ivIdl~~l~~-v~vd~~~~~v 145 (539)
+|+.+.+..|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ .+++++|||++||+ +++|.++++|
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~-~~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDG-SDGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCC-CCCEEEEEcccCCCCEEEeCCCCEE
Confidence 3999999999999999999999999999999999999996 5999987655431 12469999999999 5999999999
Q ss_pred EEeCCCCHHHHHHHHHhcCCceEeec-CCCCcceeccccCCCccCCCc-ccccccccceeEEEEEccCC------ceec-
Q 046361 146 WVQAGATIGELYYRISEKSNIHGFAA-GLCPSVGIGGHITGGGYGTMM-RKYGLAADNVVDARIVDARG------RILD- 216 (539)
Q Consensus 146 ~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~~gg~g~~s-~~~G~~~d~v~~~~vV~~~G------~i~~- 216 (539)
+|+||+++.+|.+.|.++| ++++. +.+..++|||.+++|+||... ++||..+|+|++++||+++| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 9999999999999999997 45555 456778999999999999866 58999999999999999998 7776
Q ss_pred ccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeE
Q 046361 217 REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATV 253 (539)
Q Consensus 217 ~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~ 253 (539)
+..+|+|||||+|||+ |+|||||++|||++|.+...
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 5667899999999998 89999999999999987633
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=1.5e-29 Score=254.90 Aligned_cols=174 Identities=22% Similarity=0.379 Sum_probs=151.5
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCCCCccccCCCCCeEEEEc--C-CCCcE-EEeCCCCEEE
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHL--RIHLRARSGGHDYEGVSYVSQIETPFFLLDL--A-KLRSI-EVDINNKTAW 146 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~--~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl--~-~l~~v-~vd~~~~~v~ 146 (539)
.+..|.+|..|+|++||++++|.|... ++||++||+|||..|++... .+|++|.| + .|+++ .+..++..|.
T Consensus 60 ~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~---~~GvvV~m~~~~~~~~~~~~~~~~~yvd 136 (505)
T KOG1231|consen 60 TQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT---RGGVVVCMDSSLLMKDVPVLVVDDLYVD 136 (505)
T ss_pred CCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC---CCCeEEEEehhhccCCCceeecccceEE
Confidence 345899999999999999999999999 89999999999999988773 36766655 3 46666 5667779999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcchh
Q 046361 147 VQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDLF 225 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf 225 (539)
|.||..|-+|.+++.++|+. ++..-.....+|||.++.+|.|.++.+||...+||++++||+++|++++ +.+.|++||
T Consensus 137 V~~g~~Widll~~t~e~GL~-p~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf 215 (505)
T KOG1231|consen 137 VSAGTLWIDLLDYTLEYGLS-PFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLF 215 (505)
T ss_pred eeCChhHHHHHHHHHHcCCC-ccCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceee
Confidence 99999999999999999851 1122233348999999999999999999999999999999999999997 777899999
Q ss_pred hhhhcccCCCceEEEEEEEEEEeeCC
Q 046361 226 WAIRGGGGGSFGIILAWKVKLVPVPA 251 (539)
Q Consensus 226 ~a~rG~~~g~~Givt~~~~k~~p~~~ 251 (539)
+++.||. |+|||||+++++++|+|.
T Consensus 216 ~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 216 FLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeccC-cceeeEEEEEEEeccCCc
Confidence 9999998 899999999999999994
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=2.7e-30 Score=273.72 Aligned_cols=190 Identities=26% Similarity=0.312 Sum_probs=164.9
Q ss_pred EEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHHH
Q 046361 80 IFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGELYY 158 (539)
Q Consensus 80 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~~ 158 (539)
|++|+|++||+++|++|+++++||+++|+|||+.|.+.+. +++++|||++||+| ++|+++++|+||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~---~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPE---EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCC---CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 5789999999999999999999999999999998776654 25899999999998 9999999999999999999999
Q ss_pred HHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceecc------cCCCcchhhhhhccc
Q 046361 159 RISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDR------EAMGEDLFWAIRGGG 232 (539)
Q Consensus 159 ~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~------~~~~~dLf~a~rG~~ 232 (539)
+|.++|+.+.+.+++...++|||+++++++|..+.+||.++|+|++++||++||++++. ...++||+|.++|+.
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 99999864433345556789999999999999999999999999999999999999962 345689999999998
Q ss_pred CCCceEEEEEEEEEEeeCCeEEEEEEEecchhhHHHHHHHH
Q 046361 233 GGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKW 273 (539)
Q Consensus 233 ~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (539)
|+|||||+++||++|.|+....+.+.|+..+++.+++..+
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 8999999999999999998777777776655555554443
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.5e-29 Score=259.33 Aligned_cols=170 Identities=24% Similarity=0.339 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCC-CCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHHHHHHh
Q 046361 85 TESHLQAAVICSRHLRIHLRARSGGH-DYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGELYYRISE 162 (539)
Q Consensus 85 s~~dv~~~v~~a~~~~~~v~v~ggGh-~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~~~l~~ 162 (539)
.++||+++|++|+++++||+++|+|| ++.|.+ . .+++|||++||+| ++|+++.+|+|+||+++.||.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~----~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--L----AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--C----CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47899999999999999999999997 455553 2 2479999999998 99999999999999999999999999
Q ss_pred cCCceEeecC-CCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec------ccCCCcchhhhhhcccCCC
Q 046361 163 KSNIHGFAAG-LCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD------REAMGEDLFWAIRGGGGGS 235 (539)
Q Consensus 163 ~g~~l~~~~g-~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~------~~~~~~dLf~a~rG~~~g~ 235 (539)
+|..+++.++ .+..++|||++++|++|..+.+||..+|+|+++++|++||++++ ++..++||||+++|+. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9865555444 34468999999999999999999999999999999999999996 2335789999999998 89
Q ss_pred ceEEEEEEEEEEeeCCeEEEEEEEec
Q 046361 236 FGIILAWKVKLVPVPATVTVFTVSKT 261 (539)
Q Consensus 236 ~Givt~~~~k~~p~~~~~~~~~~~~~ 261 (539)
|||||+++||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999987655555543
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.4e-28 Score=264.56 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=160.2
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAW 146 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~ 146 (539)
+|+.+....|.+++.|+|++||+++|++|++++++|+++|+|||+.+..... + .+|||++||+| ++|+++++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td----~-glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR----E-GMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC----C-EEEECcCCCCcEEEeCCCCEEE
Confidence 5999999999999999999999999999999999999999999998877654 3 46899999997 9999999999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEeec-CCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcch
Q 046361 147 VQAGATIGELYYRISEKSNIHGFAA-GLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDL 224 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dL 224 (539)
|+||+++.+|.+.|.++|+ +++. |.+...+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++||
T Consensus 163 V~AG~~l~~L~~~L~~~GL--al~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdL 239 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGL--TLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPEL 239 (573)
T ss_pred EccCCCHHHHHHHHHHcCC--EeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHH
Confidence 9999999999999999984 4554 667788999999999999864 68999999999999999999987 55678999
Q ss_pred hhhhhcccCCCceEEEEEEEEEEeeCCeE
Q 046361 225 FWAIRGGGGGSFGIILAWKVKLVPVPATV 253 (539)
Q Consensus 225 f~a~rG~~~g~~Givt~~~~k~~p~~~~~ 253 (539)
||+.|++. |.|||||++|||+.|.+...
T Consensus 240 F~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 240 FRLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 99999998 89999999999999998643
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=5.3e-27 Score=211.57 Aligned_cols=136 Identities=32% Similarity=0.511 Sum_probs=124.7
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCc-EEEeCCCCEEEEeCCCCHHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRS-IEVDINNKTAWVQAGATIGE 155 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~-v~vd~~~~~v~v~aG~~~~~ 155 (539)
|.+|++|+|++||+++|++|++++++++++|+||++.+.+... ++++|||++||+ +++|+++++++|+||++|.|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~----~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE----GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST----TEEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC----CcEEEeeccccccccccccceeEEEeccccchh
Confidence 8899999999999999999999999999999999999776533 689999999999 59999999999999999999
Q ss_pred HHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec
Q 046361 156 LYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD 216 (539)
Q Consensus 156 l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~ 216 (539)
|+++|.++|+.+.+.++.+..++|||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999985443446888889999999999999999999999999999999999999985
No 14
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=4e-24 Score=224.90 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=163.3
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCC--CCCeEEEEcCCCCcE-EEeCCCCEEEEeCC
Q 046361 74 MPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQI--ETPFFLLDLAKLRSI-EVDINNKTAWVQAG 150 (539)
Q Consensus 74 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~--~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG 150 (539)
...|.+||+|+|++||+++||+|+++++||++||||+++.|.+.+.++ +.++|+|||++||+| ++| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999998887532 124899999999998 888 5678999999
Q ss_pred CCHHHHHHHHHhcCCceEeecCC-CCcceeccccCCCccCCCcccccccccceeEEEEEccCCce-------ec--c---
Q 046361 151 ATIGELYYRISEKSNIHGFAAGL-CPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRI-------LD--R--- 217 (539)
Q Consensus 151 ~~~~~l~~~l~~~g~~l~~~~g~-~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i-------~~--~--- 217 (539)
+++.+|.++|.++|+......|+ |-.++|||.+++++.|....+||...++++. ++|+++|++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998532211223 2345788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------chhhhh--hcccCCCceEEEEEEEEEEeeCCeEEE
Q 046361 218 ------EAMGE----------------------------------DLFWAI--RGGGGGSFGIILAWKVKLVPVPATVTV 255 (539)
Q Consensus 218 ------~~~~~----------------------------------dLf~a~--rG~~~g~~Givt~~~~k~~p~~~~~~~ 255 (539)
+..+. |+...+ .|+. |++||| +++++++|.|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11223 888888 8887 899999 999999999999989
Q ss_pred EEEEecchhhHHHHHHHHH
Q 046361 256 FTVSKTLEQGATEILYKWQ 274 (539)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (539)
|.+.++..+.+.++.....
T Consensus 272 f~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred EEEeCCCHHHHHHHHHHHH
Confidence 9998887666666555444
No 15
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.90 E-value=3.2e-23 Score=209.34 Aligned_cols=182 Identities=23% Similarity=0.276 Sum_probs=160.6
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEE
Q 046361 69 YLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWV 147 (539)
Q Consensus 69 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v 147 (539)
|+.+..++.+-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+.+ |.+|+|.+||++ ++|++..+|||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 566666788899999999999999999999999999999999999887765 599999999997 99999999999
Q ss_pred eCCCCHHHHHHHHHhcCCceEeec-CCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-ccCCCcchh
Q 046361 148 QAGATIGELYYRISEKSNIHGFAA-GLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-REAMGEDLF 225 (539)
Q Consensus 148 ~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-~~~~~~dLf 225 (539)
++|+++.+|.+++.+.| ++++. |....++|||.+..|+||....-|+.....+....++.++|.++. ++..+||+|
T Consensus 117 ~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 99999999999999987 55665 788889999999999999987767777777777777888998776 667789999
Q ss_pred hhhhcccCCCceEEEEEEEEEEeeCCeEEEEEE
Q 046361 226 WAIRGGGGGSFGIILAWKVKLVPVPATVTVFTV 258 (539)
Q Consensus 226 ~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~ 258 (539)
.|.+.+. |.+|||.++||++.|.-+....+.+
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 9999999 8999999999999998765555444
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=2.3e-23 Score=211.01 Aligned_cols=163 Identities=23% Similarity=0.217 Sum_probs=133.8
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEeCCCC
Q 046361 74 MPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAK-LRSIEVDINNKTAWVQAGAT 152 (539)
Q Consensus 74 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~-l~~v~vd~~~~~v~v~aG~~ 152 (539)
...|.+++.|+|++||+++|++|+++++|+.++|+|||......+ .++++|||++ |+.+++ ++.+|+|+||++
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g----~~gvvI~l~~~l~~i~~--~~~~v~v~aG~~ 101 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG----IRGVVIRLGKGLNEIEV--EGNRITAGAGAP 101 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC----cceEEEEecCCcceEEe--cCCEEEEECCCc
Confidence 357999999999999999999999999999999999997643222 2479999998 999855 457999999999
Q ss_pred HHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCccccc-ccccceeEEEEEccCCceecccCCCcchhhhhhcc
Q 046361 153 IGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYG-LAADNVVDARIVDARGRILDREAMGEDLFWAIRGG 231 (539)
Q Consensus 153 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~ 231 (539)
|.+|.+++.++|+ .|.+..+++.| ..||+.+++++.|| .++|+|+++++|++||++++.. +.|++|++|++
T Consensus 102 ~~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s 173 (298)
T PRK13905 102 LIKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHS 173 (298)
T ss_pred HHHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccc
Confidence 9999999999985 23344445555 34566666667777 6899999999999999999743 34999999998
Q ss_pred cCC-CceEEEEEEEEEEeeC
Q 046361 232 GGG-SFGIILAWKVKLVPVP 250 (539)
Q Consensus 232 ~~g-~~Givt~~~~k~~p~~ 250 (539)
..+ .+||||+++||++|..
T Consensus 174 ~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 174 ALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 744 3899999999999963
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=2.3e-23 Score=205.29 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=174.0
Q ss_pred ccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCC
Q 046361 64 AQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINN 142 (539)
Q Consensus 64 ~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~ 142 (539)
.+|..|....+.....|..|+|+++|++++++|+++++.|+++||.+...|.|.+. .+-|||+|.+||+| ++|+-.
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPv---fDEiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPV---FDEIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccc---hHHHhhhhhhhcccccccccc
Confidence 46778988888899999999999999999999999999999999999999988887 46799999999999 999999
Q ss_pred CEEEEeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec------
Q 046361 143 KTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD------ 216 (539)
Q Consensus 143 ~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~------ 216 (539)
+++++++|+.++++..+|+++|+.+++.-|.-.++-|||.+++++.|..--+||....+|+++|+|+|+|+++.
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 99999999999999999999998777777999999999999999999999999999999999999999999985
Q ss_pred ccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeEEEE
Q 046361 217 REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVF 256 (539)
Q Consensus 217 ~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~ 256 (539)
.+.++.|+-+.+.|+. |++||||.+++-+.|.|+.+...
T Consensus 234 KDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~a 272 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNVA 272 (511)
T ss_pred ccCccccchhheecCC-ceeeEEeeEEEeecCCCcceeEE
Confidence 3456789999999998 89999999999999999865443
No 18
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.86 E-value=2.9e-21 Score=190.71 Aligned_cols=194 Identities=20% Similarity=0.249 Sum_probs=164.4
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCC-CCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEE
Q 046361 69 YLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYE-GVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAW 146 (539)
Q Consensus 69 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~-g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~ 146 (539)
|.......|+.||.|+..+||.++|+.|.++|+.+.+.|||+|.+ +..++.+...-.+.+||+.||+| .+|.++.+++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 455666799999999999999999999999999999999999976 45555532233566888999998 8999999999
Q ss_pred EeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec-----ccCCC
Q 046361 147 VQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD-----REAMG 221 (539)
Q Consensus 147 v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~-----~~~~~ 221 (539)
+++|+.-.+|.+.|.+.|+.....+.+..-.++||++++.+.|+.-..||.+-|.|+.+++|++.|.+-+ .-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999984221222333346899999999999999999999999999999999999874 33578
Q ss_pred cchhhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecch
Q 046361 222 EDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE 263 (539)
Q Consensus 222 ~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~ 263 (539)
||+.+-+.|+. |++||||++++|+.|.|+....-.+.|+..
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPNF 353 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPNF 353 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCcH
Confidence 99999999988 899999999999999999777767777653
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=2.2e-20 Score=189.13 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=129.5
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGAT 152 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~ 152 (539)
+...|.+++.|+|++||++++++|+++++|++++|+|||+.....+ .++++|+|++|++++++ +.+++|+||+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g----~~GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG----IRGITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC----eeEEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 3457999999999999999999999999999999999998732211 24899999999999876 46899999999
Q ss_pred HHHHHHHHHhcCC-ceEeecCCCCcceeccccCCCccCCCccccc-ccccceeEEEEEccCCceecccCCCcchhhhhhc
Q 046361 153 IGELYYRISEKSN-IHGFAAGLCPSVGIGGHITGGGYGTMMRKYG-LAADNVVDARIVDARGRILDREAMGEDLFWAIRG 230 (539)
Q Consensus 153 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG 230 (539)
+.+|.+++.++|+ ++.++.|.+.++| |+..++++.|| ...|.+.+++|+++||++++... .|+.|+||.
T Consensus 107 ~~~L~~~~~~~gl~Gle~~~giPGtVG-------Gav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~ 177 (305)
T PRK12436 107 IIDVSRIALDHNLTGLEFACGIPGSVG-------GALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRK 177 (305)
T ss_pred HHHHHHHHHHcCCccchhhcCCccchh-------HHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCC
Confidence 9999999999986 4555555555433 34444445566 56788889999999999997533 489999998
Q ss_pred ccCC-CceEEEEEEEEEEee
Q 046361 231 GGGG-SFGIILAWKVKLVPV 249 (539)
Q Consensus 231 ~~~g-~~Givt~~~~k~~p~ 249 (539)
+.-. ...||++++||+.+.
T Consensus 178 s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 178 SVFANNHYIILEARFELEEG 197 (305)
T ss_pred CcCCCCCEEEEEEEEEEcCC
Confidence 7432 246999999999874
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=3.9e-20 Score=186.90 Aligned_cols=163 Identities=22% Similarity=0.187 Sum_probs=132.1
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEeCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAK-LRSIEVDINNKTAWVQAGA 151 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~-l~~v~vd~~~~~v~v~aG~ 151 (539)
+...|.+++.|+|++||++++++|+++++|+.++|+|||..-...+ .++++|++++ ++.+.++ +.+++||||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g----~~gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAG----VRGVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCC----EeeEEEEecCCcceEEec--CCEEEEECCC
Confidence 3458999999999999999999999999999999999998632211 2479999976 5556543 4699999999
Q ss_pred CHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcc-cccccccceeEEEEEccCCceecccCCCcchhhhhhc
Q 046361 152 TIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMR-KYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRG 230 (539)
Q Consensus 152 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~-~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG 230 (539)
.|.+|.+++.++|+ .|.+..+||+| ..||+..++++ .||.++|+|+++++|+++| +.... ..|+.|+||+
T Consensus 106 ~~~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 99999999999984 26777788877 66777777765 6678999999999999999 44332 3599999998
Q ss_pred ccCCCceEEEEEEEEEEeeC
Q 046361 231 GGGGSFGIILAWKVKLVPVP 250 (539)
Q Consensus 231 ~~~g~~Givt~~~~k~~p~~ 250 (539)
+.-+..||||+++||++|..
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 65233479999999999853
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.83 E-value=3e-20 Score=186.60 Aligned_cols=162 Identities=20% Similarity=0.151 Sum_probs=138.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCCH
Q 046361 74 MPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATI 153 (539)
Q Consensus 74 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~~ 153 (539)
...|.++++|+|++||++++++|+++++|+.++|+|||....+... ++++|++++|+.+.+++ +.+++|+||+.|
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~----~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~ 84 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGR----GGVIINLGKGIDIEDDE-GEYVHVGGGENW 84 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCc----CeEEEECCCCceEEEec-CCEEEEEcCCcH
Confidence 4579999999999999999999999999999999999988655433 68999999999887766 579999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCccccccccc-ceeEEEEEccCCceecccCCCcchhhhhhccc
Q 046361 154 GELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAAD-NVVDARIVDARGRILDREAMGEDLFWAIRGGG 232 (539)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d-~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 232 (539)
.+|.+++.++|+ .|.+..+|++| ..||+.+++++.||...+ .|+++++|++||++++... .|+.|+||.+.
T Consensus 85 ~~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~ 156 (284)
T TIGR00179 85 HKLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSI 156 (284)
T ss_pred HHHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCccc
Confidence 999999999974 47888888888 588899999999999875 6799999999999987433 49999999654
Q ss_pred CCC-c-eEEEEEEEEEEe
Q 046361 233 GGS-F-GIILAWKVKLVP 248 (539)
Q Consensus 233 ~g~-~-Givt~~~~k~~p 248 (539)
-.. . .||++++|++.+
T Consensus 157 f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 157 FQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred cCCCCcEEEEEEEEEecc
Confidence 221 1 699999999854
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=4.9e-20 Score=189.32 Aligned_cols=164 Identities=21% Similarity=0.168 Sum_probs=138.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGAT 152 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~ 152 (539)
+...+.+++.|+|++||++++++|+++++|+.++|+|||..-... +.+++||+++ ++.++++.++.+|+|+||+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~----g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADD----GFDGTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCC----CccEEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 345799999999999999999999999999999999999863221 2358999998 58888876678999999999
Q ss_pred HHHHHHHHHhcCC-ceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccC-CceecccCCCcchhhhhhc
Q 046361 153 IGELYYRISEKSN-IHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDAR-GRILDREAMGEDLFWAIRG 230 (539)
Q Consensus 153 ~~~l~~~l~~~g~-~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~-G~i~~~~~~~~dLf~a~rG 230 (539)
|.+|.+++.++|+ |+.+..|.+++||.+..+..|++|. .++|.|.++++++.+ |++++.. +.|++|+||+
T Consensus 104 ~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~ 175 (363)
T PRK13903 104 WDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRT 175 (363)
T ss_pred HHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECCCCEEEEEE--HHHcceeccc
Confidence 9999999999997 6777788888887777777777665 378999999999965 9998743 4699999998
Q ss_pred ccC--CCceEEEEEEEEEEee
Q 046361 231 GGG--GSFGIILAWKVKLVPV 249 (539)
Q Consensus 231 ~~~--g~~Givt~~~~k~~p~ 249 (539)
+.- +.++|||+++||++|.
T Consensus 176 S~f~~~~~~IIl~a~f~L~~~ 196 (363)
T PRK13903 176 SVLKHSDRAVVLEVEFQLDPS 196 (363)
T ss_pred cccCCCCCEEEEEEEEEEEcC
Confidence 631 3478999999999986
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=7.1e-20 Score=185.40 Aligned_cols=161 Identities=21% Similarity=0.199 Sum_probs=133.7
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCCHH
Q 046361 75 PKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIG 154 (539)
Q Consensus 75 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~~~ 154 (539)
..+.+++.|+|++||+++|++|+++++|+.++|+|||......+ .++++|++++|++++++. .+++||||+.+.
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g----~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~ 108 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG----IRGIVISLLSLDHIEVSD--DAIIAGSGAAII 108 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC----cceEEEEecCccceEEeC--CEEEEECCCcHH
Confidence 47999999999999999999999999999999999998732222 258999998999998763 589999999999
Q ss_pred HHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCccccc-ccccceeEEEEEccCCceecccCCCcchhhhhhcccC
Q 046361 155 ELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYG-LAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGG 233 (539)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 233 (539)
+|.+++.++|+ .|.+..+||+| ..||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.-
T Consensus 109 ~l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~ 180 (307)
T PRK13906 109 DVSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSII 180 (307)
T ss_pred HHHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccC
Confidence 99999999984 35555567777 56777777778885 78999999999999999997533 489999996552
Q ss_pred CC-ceEEEEEEEEEEee
Q 046361 234 GS-FGIILAWKVKLVPV 249 (539)
Q Consensus 234 g~-~Givt~~~~k~~p~ 249 (539)
.. --||++++|++.|.
T Consensus 181 ~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 181 QKEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCCEEEEEEEEEECCC
Confidence 21 24999999999873
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=6.3e-18 Score=170.44 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=131.7
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCC-cEEEeCCCCEEEEeCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLR-SIEVDINNKTAWVQAGA 151 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~-~v~vd~~~~~v~v~aG~ 151 (539)
+.....+++.|++++|+++++++|+++++|+.++|+|||....+.+. ++++|++++++ .+..+.+..+++|+||+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~----~GvVI~l~~~~~~i~~~~~~~~v~v~AG~ 92 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGF----DGLVARYRGQRWELHEHGDTAEVWVEAGA 92 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCc----CeEEEEecCCCcEEEEeCCcEEEEEEcCC
Confidence 34578899999999999999999999999999999999997655443 68999998754 66666555599999999
Q ss_pred CHHHHHHHHHhcCCceEeecCCCCcceeccccCCC-ccCCCcccccccccceeEEEEEccCCceecccCCCcchhhhhhc
Q 046361 152 TIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGG-GYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRG 230 (539)
Q Consensus 152 ~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~g-g~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG 230 (539)
.|.+|.+++.++|+ .|....+||+| ..|| .++......+.++|.|.++++++.+|++++... .|++|+||.
T Consensus 93 ~~~~l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~ 164 (295)
T PRK14649 93 PMAGTARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRT 164 (295)
T ss_pred cHHHHHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccce
Confidence 99999999999984 45567778888 4444 444444444568999999999999999987533 499999997
Q ss_pred ccCCC---------ceEEEEEEEEEEee
Q 046361 231 GGGGS---------FGIILAWKVKLVPV 249 (539)
Q Consensus 231 ~~~g~---------~Givt~~~~k~~p~ 249 (539)
+.--. --||++++|++.+.
T Consensus 165 S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 165 SVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred eecccccccccccCCeEEEEEEEEECCC
Confidence 64222 12899999999875
No 25
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.67 E-value=3.7e-17 Score=117.92 Aligned_cols=47 Identities=51% Similarity=0.898 Sum_probs=35.2
Q ss_pred ccccccCccccCCCCCCchhhhhhhhHHhhhhhcHHHHHHHHhhcCCCCCCccCCCCC
Q 046361 470 AYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIP 527 (539)
Q Consensus 470 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~qsi~ 527 (539)
+|+||+|.+++ .++|.+.|||+||+||++||++|||.|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999999965 137999999999999999999999999999999996
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=5.7e-16 Score=155.73 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=128.0
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCCH
Q 046361 74 MPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATI 153 (539)
Q Consensus 74 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~~ 153 (539)
.....+++.|++.+|+++++++|++ ++|+.+.|+|+|....+.+. ++++|.+++|+.++++ +..++|+||+.|
T Consensus 31 GG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~----~gvVI~l~~~~~i~i~--~~~v~v~AG~~l 103 (297)
T PRK14653 31 GGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM----DFVVVSTERLDDIFVD--NDKIICESGLSL 103 (297)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc----cEEEEEeCCcCceEEe--CCEEEEeCCCcH
Confidence 3477899999999999999999999 99999999999988655444 5899999889999886 368999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccCCceecccCCCcchhhhhhccc
Q 046361 154 GELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDARGRILDREAMGEDLFWAIRGGG 232 (539)
Q Consensus 154 ~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 232 (539)
.+|..++.++|+ .|....+||+|. .||+.-++++.||. ++|.|.++++++ +|++++... .|+-|.||.+.
T Consensus 104 ~~L~~~~~~~GL-----~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S~ 174 (297)
T PRK14653 104 KKLCLVAAKNGL-----SGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNSI 174 (297)
T ss_pred HHHHHHHHHCCC-----cchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCcccc
Confidence 999999999986 334444455453 45555556666888 899999999999 787776433 48999999654
Q ss_pred CCC--ceEEEEEEEEEEee
Q 046361 233 GGS--FGIILAWKVKLVPV 249 (539)
Q Consensus 233 ~g~--~Givt~~~~k~~p~ 249 (539)
-.. --||++++|++.|.
T Consensus 175 ~~~~~~~iI~~a~f~L~~~ 193 (297)
T PRK14653 175 FKEEKDLIILRVTFKLKKG 193 (297)
T ss_pred CCCCCcEEEEEEEEEEecC
Confidence 221 12999999999985
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=6.4e-15 Score=145.34 Aligned_cols=165 Identities=22% Similarity=0.198 Sum_probs=132.8
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGAT 152 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~ 152 (539)
+....+.++.|++.+|+.++++++.+.++|+.+.|+|+|..-...+ .++++|.+.+++.++++.+...+++++|+.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g----~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~ 92 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG----IGGVVIKLGKLNFIEIEGDDGLIEAGAGAP 92 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC----CceEEEEcccccceeeeccCCeEEEccCCc
Confidence 4458899999999999999999999999999999999997643322 368999999999998887777999999999
Q ss_pred HHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccCCceecccCCCcchhhhhhcc
Q 046361 153 IGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDARGRILDREAMGEDLFWAIRGG 231 (539)
Q Consensus 153 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~ 231 (539)
|.+|.+.+.++|+ .|...-+||+|. .||+.=++.+.||. +.|.+.++++++.+|++.+.. +.||-|+||-+
T Consensus 93 ~~~l~~~~~~~gl-----~GlE~l~gIPGs-vGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S 164 (291)
T COG0812 93 WHDLVRFALENGL-----SGLEFLAGIPGS-VGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTS 164 (291)
T ss_pred HHHHHHHHHHcCC-----cchhhhcCCCcc-cchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccC
Confidence 9999999999985 344444455552 34444455555655 689999999999999999753 34999999965
Q ss_pred cCCCc-eEEEEEEEEEEee
Q 046361 232 GGGSF-GIILAWKVKLVPV 249 (539)
Q Consensus 232 ~~g~~-Givt~~~~k~~p~ 249 (539)
.-..- .||++++||+.|-
T Consensus 165 ~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 165 PFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred cCCCCCEEEEEEEEEeCCC
Confidence 53222 7999999999985
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.58 E-value=1.4e-14 Score=145.29 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=128.6
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGAT 152 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~ 152 (539)
+.....+++.|+|.+|+++++++++++++|+.+.|+|+|..-.+.+ ..++++|.+.+|+.++++. ..++|+||+.
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g---~~~g~vi~~~~~~~i~~~~--~~v~a~AG~~ 103 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEE---EIDFPIIYTGHLNKIEIHD--NQIVAECGTN 103 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCC---ccceEEEEECCcCcEEEeC--CEEEEEeCCc
Confidence 3447888999999999999999999999999999999998743332 0257889887799998763 4799999999
Q ss_pred HHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccCCceecccCCCcchhhhhhcc
Q 046361 153 IGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDARGRILDREAMGEDLFWAIRGG 231 (539)
Q Consensus 153 ~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~ 231 (539)
|.+|.+++.++|+ .|....+||+|. .||+.=++.+.||. ++|.|.++++++.+|++++... .|+-|+||-+
T Consensus 104 ~~~l~~~~~~~gl-----~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S 175 (302)
T PRK14650 104 FEDLCKFALQNEL-----SGLEFIYGLPGT-LGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKIS 175 (302)
T ss_pred HHHHHHHHHHcCC-----chhhhhcCCCcc-hhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCcccccc
Confidence 9999999999985 344455555552 34445555566664 6899999999999999987433 4899999965
Q ss_pred cCCC-ceEEEEEEEEEEeeC
Q 046361 232 GGGS-FGIILAWKVKLVPVP 250 (539)
Q Consensus 232 ~~g~-~Givt~~~~k~~p~~ 250 (539)
.-.. -.||++++|++.|..
T Consensus 176 ~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 176 PFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cCCCCCEEEEEEEEEEcCCC
Confidence 4211 249999999998854
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=1.5e-14 Score=147.08 Aligned_cols=163 Identities=18% Similarity=0.102 Sum_probs=127.3
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEe-CCC--CEEEEeC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVD-INN--KTAWVQA 149 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd-~~~--~~v~v~a 149 (539)
+.....+++.|+|++|+++++++|+++++|+.+.|+|+|..-.. .. ++++|.+ +|+.++++ .++ .+++|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~----~g~vI~~-~~~~~~~~~~~~~~~~v~a~A 90 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DF----DGTVLLN-RIKGIEVLSEDDDAWYLHVGA 90 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CC----CEEEEEe-cCCceEEEecCCCeEEEEEEc
Confidence 33478899999999999999999999999999999999977543 23 6788887 49999873 222 3899999
Q ss_pred CCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccC-CceecccCCCcchhhh
Q 046361 150 GATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDAR-GRILDREAMGEDLFWA 227 (539)
Q Consensus 150 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~-G~i~~~~~~~~dLf~a 227 (539)
|+.|.+|.+++.++|+ .|....+||+|. .||+.=++.+.||. +.|.|.++++++.+ |++++... .|+.|+
T Consensus 91 G~~~~~l~~~~~~~gl-----~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~ 162 (334)
T PRK00046 91 GENWHDLVLWTLQQGM-----PGLENLALIPGT-VGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFG 162 (334)
T ss_pred CCcHHHHHHHHHHcCc-----hhhHHhcCCCcc-hhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcc
Confidence 9999999999999985 444555566553 34455555566664 68999999999987 99887433 499999
Q ss_pred hhcccCCC----ceEEEEEEEEEEee
Q 046361 228 IRGGGGGS----FGIILAWKVKLVPV 249 (539)
Q Consensus 228 ~rG~~~g~----~Givt~~~~k~~p~ 249 (539)
||-+.-.. --||++++|++.|.
T Consensus 163 YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCCCCcCCEEEEEEEEEecCC
Confidence 99664221 23999999999985
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.51 E-value=1.1e-13 Score=140.70 Aligned_cols=167 Identities=25% Similarity=0.288 Sum_probs=126.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEe---CCCCEEEEeC
Q 046361 73 SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVD---INNKTAWVQA 149 (539)
Q Consensus 73 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd---~~~~~v~v~a 149 (539)
+.....+++.|+|.+|+++++++++++++|+.+.|+|+|..-.+.+ ..++||.+.+|+.+++. .+...++|++
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g----~~G~VI~l~~~~~i~i~~~~~~~~~v~agA 101 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG----VPGLMLSLRRFRSLHTQTQRDGSVLVHAGA 101 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC----ccEEEEEeCCcCceEEeeccCCcEEEEEEe
Confidence 3447888999999999999999999999999999999998754333 36899999779998752 2324799999
Q ss_pred CCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEE--------------------
Q 046361 150 GATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIV-------------------- 208 (539)
Q Consensus 150 G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV-------------------- 208 (539)
|+.|.+|.+++.++|+ .|....+||+|. .||+.=++.+.||. +.|.|.+++++
T Consensus 102 G~~~~~Lv~~~~~~gl-----~GlE~laGIPGT-VGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~ 175 (354)
T PRK14648 102 GLPVAALLAFCAHHAL-----RGLETFAGLPGS-VGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQ 175 (354)
T ss_pred CCcHHHHHHHHHHcCC-----cchhhhcCCCcc-hhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccc
Confidence 9999999999999985 445555666663 34455555666765 68999999999
Q ss_pred ccCCceec-----------ccCCCcchhhhhhcccCCC---------ceEEEEEEEEEEee
Q 046361 209 DARGRILD-----------REAMGEDLFWAIRGGGGGS---------FGIILAWKVKLVPV 249 (539)
Q Consensus 209 ~~~G~i~~-----------~~~~~~dLf~a~rG~~~g~---------~Givt~~~~k~~p~ 249 (539)
+.+|+++. ..-.+.|+.|+||-+.--. --||++++|++.|.
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 176 DKRGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred cCCCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 45667620 0112358899999765321 13999999999875
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.48 E-value=7e-14 Score=139.15 Aligned_cols=126 Identities=25% Similarity=0.365 Sum_probs=111.0
Q ss_pred EEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeE
Q 046361 126 FLLDLAKLRSI-EVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVD 204 (539)
Q Consensus 126 ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~ 204 (539)
--|++..|.+| ++|.+..+|+|+|+++++++.++|.+.|+.|++. ......++||.+.|-|.-..|.+||+..+.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhe
Confidence 34566656666 8999999999999999999999999998766543 466779999999999999999999999999999
Q ss_pred EEEEccCCceec--ccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeE
Q 046361 205 ARIVDARGRILD--REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATV 253 (539)
Q Consensus 205 ~~vV~~~G~i~~--~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~ 253 (539)
.|||++||++++ .+.+++|||+|+-.+. |++|..+.+++|+.|..+.+
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 999999999996 4457899999999999 89999999999999987744
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.31 E-value=1.1e-11 Score=122.66 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=111.6
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCC-CCcEEEeCCCCEEEEeCCCCHH
Q 046361 76 KPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAK-LRSIEVDINNKTAWVQAGATIG 154 (539)
Q Consensus 76 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~-l~~v~vd~~~~~v~v~aG~~~~ 154 (539)
...+++ |++.+|+++++ ++|+.+.|+|+|..-.+.+ .++++|.+.+ ++.++++. +|+||+.|.
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g----~~g~vI~l~~~~~~~~~~~-----~a~AG~~~~ 83 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG----VPERVIRLGGEFAEWDLDG-----WVGGGVPLP 83 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC----cceEEEEECCcceeEeECC-----EEECCCcHH
Confidence 555666 99999999988 5899999999997743332 3578888865 66665532 699999999
Q ss_pred HHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccCCceecccCCCcchhhhhhcccC
Q 046361 155 ELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDARGRILDREAMGEDLFWAIRGGGG 233 (539)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 233 (539)
+|.+++.++|+ .|....+||+|. .||+.=++.+.||. ++|.|.++++++ +|++++... .|+.|+||.+.-
T Consensus 84 ~l~~~~~~~gl-----~GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~~ 154 (273)
T PRK14651 84 GLVRRAARLGL-----SGLEGLVGIPAQ-VGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSGL 154 (273)
T ss_pred HHHHHHHHCCC-----cchhhhcCCCcc-hhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccCC
Confidence 99999999985 344555555553 34445555566664 689999999997 899887433 499999996542
Q ss_pred CCceEEEEEEEEEEee
Q 046361 234 GSFGIILAWKVKLVPV 249 (539)
Q Consensus 234 g~~Givt~~~~k~~p~ 249 (539)
..--||++++|++.|.
T Consensus 155 ~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 155 PPGHVVTRVRLKLRPS 170 (273)
T ss_pred CCCEEEEEEEEEECCC
Confidence 2214999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.97 E-value=2.4e-09 Score=105.21 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCCHH
Q 046361 75 PKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIG 154 (539)
Q Consensus 75 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~~~ 154 (539)
...++++.|++.+ + ++|+.+.|+|+|..-.+.+ .++++ -+++|+.++++. .+++|+||+.|.
T Consensus 17 G~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g----~~~vv-~~~~~~~~~~~~--~~v~~~AG~~l~ 78 (257)
T PRK13904 17 PPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP----KNLAI-LGKNFDYIKIDG--ECLEIGGATKSG 78 (257)
T ss_pred ceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC----ccEEE-EccCcCeEEEeC--CEEEEEcCCcHH
Confidence 4677788888887 5 8999999999997643322 24444 356788988754 489999999999
Q ss_pred HHHHHHHhcCCceEeecCCCCcceeccccCCCccCCCcccccc-cccceeEEEEEccCCceecccCCCcchhhhhhcccC
Q 046361 155 ELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGL-AADNVVDARIVDARGRILDREAMGEDLFWAIRGGGG 233 (539)
Q Consensus 155 ~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~ 233 (539)
+|.+++.++|+ .|....+||+|. .||+.=++.+.||. ++|.|.++++++ |+ + ...|+.|+||-+.-
T Consensus 79 ~l~~~~~~~gl-----~GlE~l~gIPGt-VGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~ 145 (257)
T PRK13904 79 KIFNYAKKNNL-----GGFEFLGKLPGT-LGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI 145 (257)
T ss_pred HHHHHHHHCCC-----chhhhhcCCCcc-HHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC
Confidence 99999999985 344444555552 34444444555654 689999999998 42 2 23589999996542
Q ss_pred CCceEEEEEEEEEEeeC
Q 046361 234 GSFGIILAWKVKLVPVP 250 (539)
Q Consensus 234 g~~Givt~~~~k~~p~~ 250 (539)
-.||++++||+.|..
T Consensus 146 --~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 --NGVILEARFKKTHGF 160 (257)
T ss_pred --CcEEEEEEEEECCCC
Confidence 249999999999854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.24 E-value=0.045 Score=50.98 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=52.2
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGE 155 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~ 155 (539)
+..+++|+|.+|+.++++ .+-...+.+||++....- ..+......+||++++... .|..+++.+++||++++.+
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~-~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQM-REGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHH-HTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhc-ccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 456889999999999998 233678889999853110 0100123589999987554 4444478999999999999
Q ss_pred HHHH
Q 046361 156 LYYR 159 (539)
Q Consensus 156 l~~~ 159 (539)
+.+.
T Consensus 77 l~~~ 80 (171)
T PF00941_consen 77 LEES 80 (171)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 9886
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.84 E-value=0.089 Score=52.39 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=84.2
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHH
Q 046361 79 FIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGELY 157 (539)
Q Consensus 79 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~ 157 (539)
.++.|+|.+|+.++++- ++-...+.+||++..... .. ....++||++++ .. .+..+++.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~-~~--~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATP-TR--TDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhh-CC--CCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 46899999999888763 332457899999974211 11 124689999976 54 455567899999999999998
Q ss_pred HHH------HhcCCceEeecCCCCcceeccccCCCccCCCcccccccccc-----eeEEEEEccCCceecccCCCcchhh
Q 046361 158 YRI------SEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADN-----VVDARIVDARGRILDREAMGEDLFW 226 (539)
Q Consensus 158 ~~l------~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~-----v~~~~vV~~~G~i~~~~~~~~dLf~ 226 (539)
+.. .+.-..+ -.+..-+..+|||.+..+-- .+|. .+..+|+..+++.+.. .|+|
T Consensus 77 ~~~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~- 141 (258)
T PRK09799 77 DARFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL- 141 (258)
T ss_pred hCcccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc-
Confidence 642 1110000 01123355678888775421 1332 2466677666654422 1433
Q ss_pred hhhcccCCCceEEEEEEEE
Q 046361 227 AIRGGGGGSFGIILAWKVK 245 (539)
Q Consensus 227 a~rG~~~g~~Givt~~~~k 245 (539)
.|.. + .|||++.+.
T Consensus 142 --~g~~-~--Eil~~I~iP 155 (258)
T PRK09799 142 --ACPC-D--RLLTEIIIP 155 (258)
T ss_pred --CCCC-C--cEEEEEEcC
Confidence 2222 2 488888775
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.21 E-value=0.15 Score=51.70 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=64.3
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCC-CccccCCCCCeEEEEcCCCCcE-EEe-CCCCEEEEeCCCCHHH
Q 046361 79 FIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEG-VSYVSQIETPFFLLDLAKLRSI-EVD-INNKTAWVQAGATIGE 155 (539)
Q Consensus 79 ~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g-~s~~~~~~~~~ivIdl~~l~~v-~vd-~~~~~v~v~aG~~~~~ 155 (539)
-++.|+|.+|..++++. +. ..++.+||++... ..... .....+||++++... .+. .+++.+++|+++++.+
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~--~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~ 79 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHN--DRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQ 79 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCC--CCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHH
Confidence 67899999999988764 22 3577999998631 11111 124689999986654 344 2346899999999999
Q ss_pred HHH--HHHhcC------CceEeecCCCCcceeccccCCCc
Q 046361 156 LYY--RISEKS------NIHGFAAGLCPSVGIGGHITGGG 187 (539)
Q Consensus 156 l~~--~l~~~g------~~l~~~~g~~~~vgvgG~~~~gg 187 (539)
+.+ .+.++- ....-.+..-+..+|||.+..+.
T Consensus 80 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 80 IIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 985 111110 00000123345678999887543
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.65 E-value=0.23 Score=49.48 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=80.9
Q ss_pred EEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHHH
Q 046361 80 IFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGELYY 158 (539)
Q Consensus 80 vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~~ 158 (539)
+++|+|.+|+.++++. ++-.-.+.+|||+..-.-. . ....++||++++ .. .+..+++.+++|+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~-~--~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPT-R--TDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhc-c--cCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 5789999999887653 3223567899999742211 1 123588999876 54 4444567999999999999875
Q ss_pred H------HHhcCCceEeecCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceecccCCCcchhhhhhccc
Q 046361 159 R------ISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGG 232 (539)
Q Consensus 159 ~------l~~~g~~l~~~~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 232 (539)
. |.+.- ...-.+..-+..++||.+..+....- -...=..+..+|+..+++.+.. .|+|- |..
T Consensus 77 ~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p~~D----~~~~LlaldA~v~l~~~r~vp~----~dF~~---g~~ 144 (257)
T TIGR03312 77 NELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQSESL----LLPVLLALKATVVLANASQMDI----EDYLA---SEQ 144 (257)
T ss_pred CcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCCCchH----HHHHHHHcCCEEEEecCcEEeH----HHhcC---CCC
Confidence 2 21110 00001233456678998775432100 0011122455666555543322 14332 222
Q ss_pred CCCceEEEEEEEE
Q 046361 233 GGSFGIILAWKVK 245 (539)
Q Consensus 233 ~g~~Givt~~~~k 245 (539)
+ -+|+++.+.
T Consensus 145 -~--Ell~~V~iP 154 (257)
T TIGR03312 145 -R--ELIVEVIIP 154 (257)
T ss_pred -C--cEEEEEEcC
Confidence 2 388888775
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.21 E-value=0.5 Score=51.19 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=88.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGV-SYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIG 154 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~ 154 (539)
..-+++|+|.+|+.++++. +. ..++.+||++..-. .... .....+||++++..+ .+..+++.+++||++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQM--RDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCC--CCCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568999999999988764 22 35778999996311 1111 124689999986654 344456789999999999
Q ss_pred HHHHHHHhcCCce-----Eee-cCCCCcceeccccCCCccCCCcccccccccce-----e--EEEEEccCCceecccCCC
Q 046361 155 ELYYRISEKSNIH-----GFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNV-----V--DARIVDARGRILDREAMG 221 (539)
Q Consensus 155 ~l~~~l~~~g~~l-----~~~-~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v-----~--~~~vV~~~G~i~~~~~~~ 221 (539)
++.+.+.++=..+ .+. +..-+..+|||.+..+.. .+|.. + .+++...+|+... .-
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-pl-- 333 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-PL-- 333 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-eH--
Confidence 9987655431000 011 133456789998866432 13322 2 3455556664221 11
Q ss_pred cchhhhhhcccCCCceEEEEEEEEE
Q 046361 222 EDLFWAIRGGGGGSFGIILAWKVKL 246 (539)
Q Consensus 222 ~dLf~a~rG~~~g~~Givt~~~~k~ 246 (539)
.|+|-.++--.-..=-||+++.+..
T Consensus 334 ~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 334 EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred HHhhcccccccCCCCceEEEEEecC
Confidence 2555433311101124999998864
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.46 E-value=0.1 Score=52.13 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=24.5
Q ss_pred hhhHHhhhhhcHHHHHHHHhhcCCCCCCccCCCC
Q 046361 493 ATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSI 526 (539)
Q Consensus 493 ~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~qsi 526 (539)
++|.+ -||+.++|..+-|++|||.+++.--|.|
T Consensus 248 ~dW~~-HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWRR-HFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHHH-HHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHHH-HhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 47964 5799999999999999999999887776
No 40
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=91.41 E-value=0.6 Score=45.85 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=22.9
Q ss_pred hHHhhhhhcHHHHHHHHhhcCCCCCCccC
Q 046361 495 WGVKYFKENFNRLVRVKINVDPGNLFRHE 523 (539)
Q Consensus 495 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 523 (539)
....| .++.+-++||+++||+|+|.++
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 44555 6899999999999999999876
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.61 E-value=0.56 Score=48.16 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=63.7
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGE 155 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~ 155 (539)
+.-++.|+|.+|..++++-. + .-.+.+||++....-. .+-.....+||++++..+ .+..+++.+++|+++++.+
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~-~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLR-RGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHh-cccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 34578999999998887642 2 2467899998531111 100124689999976544 3444567899999999999
Q ss_pred HHHH---------HHhcCCceEeecCCCCcceeccccCCC
Q 046361 156 LYYR---------ISEKSNIHGFAAGLCPSVGIGGHITGG 186 (539)
Q Consensus 156 l~~~---------l~~~g~~l~~~~g~~~~vgvgG~~~~g 186 (539)
+.+. |.+.- ...--+..-+..+|||.+.+.
T Consensus 79 l~~~~~i~~~~p~L~~a~-~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 79 LAEDALVRTRWPALAQAA-RAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred HhhChhhHhHhHHHHHHH-HHhCCHHHhCceecHHhhhcc
Confidence 8652 11110 000012333567899988853
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.82 E-value=1.2 Score=44.44 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccC-CCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHHHHHH-
Q 046361 83 PLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQ-IETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGELYYR- 159 (539)
Q Consensus 83 P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~-~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~l~~~- 159 (539)
|+|.+|+.++++.. . ..++.+||++..-.- ..+ -.....+||++++..+ .+..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~-~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQW-EKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHH-hcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 78889988888743 2 357889999863111 110 0114689999987665 55566789999999999999642
Q ss_pred --------HHhcCCceEeecCCCCcceeccccCCC
Q 046361 160 --------ISEKSNIHGFAAGLCPSVGIGGHITGG 186 (539)
Q Consensus 160 --------l~~~g~~l~~~~g~~~~vgvgG~~~~g 186 (539)
|.+.= ...-.+..-+..++||.+..+
T Consensus 76 ~i~~~~p~L~~a~-~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDAA-SAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHHH-HHhcCHHHhcceecHHhccCc
Confidence 11110 000011333567899988765
No 43
>PLN02906 xanthine dehydrogenase
Probab=84.34 E-value=2.1 Score=52.43 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=56.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCc-cccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVS-YVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIG 154 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s-~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~ 154 (539)
..-++.|+|.+|+.++++.. . ..++.+||++..-.- ... .....+||++++..+ .|..+++.+++||++++.
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~--~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKN--AQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhcc--CCCCeEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 34689999999999877642 1 246789999973211 111 124689999986655 445556789999999999
Q ss_pred HHHHHHHh
Q 046361 155 ELYYRISE 162 (539)
Q Consensus 155 ~l~~~l~~ 162 (539)
++.+.|.+
T Consensus 302 el~~~l~~ 309 (1319)
T PLN02906 302 ELQNLFRK 309 (1319)
T ss_pred HHHHHHHH
Confidence 99986544
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=81.97 E-value=2.5 Score=40.90 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=20.2
Q ss_pred hHHhhhhh-cHHHHHHHHhhcCCCCCCc
Q 046361 495 WGVKYFKE-NFNRLVRVKINVDPGNLFR 521 (539)
Q Consensus 495 ~~~~yyg~-n~~RL~~IK~kyDP~~vF~ 521 (539)
|-...+|+ .+.-+++||+.+||+|++.
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 44455665 6999999999999999984
No 45
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=81.84 E-value=1.1 Score=44.56 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=19.6
Q ss_pred hhHHhhhhhcHHHHHHHHhhcCCCCCCccC
Q 046361 494 TWGVKYFKENFNRLVRVKINVDPGNLFRHE 523 (539)
Q Consensus 494 ~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 523 (539)
...+.| +++++-.++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 445555 8999999999999999999864
No 46
>PLN00192 aldehyde oxidase
Probab=81.34 E-value=3.9 Score=50.25 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=68.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGE 155 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~ 155 (539)
..-++.|+|.+|+.++++.....+-..++..||++..-.- .. ....++||++++..+ .+..+++.+++||++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~--~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DE--ELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-cc--CCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 4568999999999988764210112366788999863221 11 124689999986655 4555567999999999999
Q ss_pred HHHHHHhcCCc---e--------Eee-cCCCCcceeccccCCC
Q 046361 156 LYYRISEKSNI---H--------GFA-AGLCPSVGIGGHITGG 186 (539)
Q Consensus 156 l~~~l~~~g~~---l--------~~~-~g~~~~vgvgG~~~~g 186 (539)
+.+.+...-.. + .+. +..-+..+|||.+..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 98765543100 0 011 1233556789988655
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.94 E-value=5.9 Score=48.62 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=56.0
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC-ccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHHH
Q 046361 78 EFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGV-SYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIGE 155 (539)
Q Consensus 78 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~-s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~~ 155 (539)
.-++.|+|.+|+.++++.. . .-++..||++..-. .... .....+||++++..+ .+..+++.+++||++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~--~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKG--VFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhcc--CCCCeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 4689999999999887642 2 35678999997421 1111 123589999986665 4555668999999999999
Q ss_pred HHHHHH
Q 046361 156 LYYRIS 161 (539)
Q Consensus 156 l~~~l~ 161 (539)
+.+.|.
T Consensus 311 l~~~l~ 316 (1330)
T TIGR02969 311 VKDILA 316 (1330)
T ss_pred HHHHHH
Confidence 998654
No 48
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=74.49 E-value=5.1 Score=44.43 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=23.5
Q ss_pred hhHHhhhhhcHHHHHHHHhhcCCCCCCccC
Q 046361 494 TWGVKYFKENFNRLVRVKINVDPGNLFRHE 523 (539)
Q Consensus 494 ~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 523 (539)
...+.| .++++-++||+++||+|+|.++
T Consensus 476 ~l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 476 GVIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred HHHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 344555 5899999999999999999876
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=74.18 E-value=7.9 Score=40.05 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=82.7
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE-EEeCCCCEEEEeCCCCHH
Q 046361 76 KPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI-EVDINNKTAWVQAGATIG 154 (539)
Q Consensus 76 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v-~vd~~~~~v~v~aG~~~~ 154 (539)
--..++.|.+.+|...++.. +-..++..|++.+.-.-...- .+-..+|-..++..+ +++...+.+++|+|+++.
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~m-r~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQM-RDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHH-hhcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 34568899999999887743 334566678877642111100 011245555555554 455667899999999999
Q ss_pred HHHHHHHhcCCceE--ee-cCC---CCcceeccccCCCccCCCcccccccc--cceeEEEEEccCCceec-ccCCCcchh
Q 046361 155 ELYYRISEKSNIHG--FA-AGL---CPSVGIGGHITGGGYGTMMRKYGLAA--DNVVDARIVDARGRILD-REAMGEDLF 225 (539)
Q Consensus 155 ~l~~~l~~~g~~l~--~~-~g~---~~~vgvgG~~~~gg~g~~s~~~G~~~--d~v~~~~vV~~~G~i~~-~~~~~~dLf 225 (539)
+.++.|..+=..|. +. -|. -+.-++||.+.+|.-= |.+- =-.++.++++-.|+-.+ ..- .|+|
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI------GDtPPaLIALgA~ltLr~g~~~RtlPL--e~~F 348 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPI------GDTPPALIALGATLTLRSGDGRRTLPL--EDYF 348 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcC------CCCCchhhhcCcEEEEEecCCcccccH--HHHH
Confidence 99999987521000 00 122 2445688887766421 2221 23367788887776554 222 2677
Q ss_pred hhhh
Q 046361 226 WAIR 229 (539)
Q Consensus 226 ~a~r 229 (539)
-+|+
T Consensus 349 i~Y~ 352 (493)
T COG4630 349 IAYG 352 (493)
T ss_pred HHhh
Confidence 7765
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=69.57 E-value=14 Score=37.20 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=52.8
Q ss_pred ceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCc-E-EEeCCCCEEEEeCCCCHH
Q 046361 77 PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRS-I-EVDINNKTAWVQAGATIG 154 (539)
Q Consensus 77 p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~-v-~vd~~~~~v~v~aG~~~~ 154 (539)
+..+.+|.|.+|...+++ +.+ -..+.+|||++....... -....-+||+.++.. . .+..+++.+++||-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 567889999998877766 344 567889999976321111 012457899988742 2 333456789999999999
Q ss_pred HHH
Q 046361 155 ELY 157 (539)
Q Consensus 155 ~l~ 157 (539)
++.
T Consensus 78 ei~ 80 (284)
T COG1319 78 EIA 80 (284)
T ss_pred HHH
Confidence 986
No 51
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=58.35 E-value=7.4 Score=41.53 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=23.1
Q ss_pred hhHHhhhh-hcHHHHHHHHhhcCCCCCCc
Q 046361 494 TWGVKYFK-ENFNRLVRVKINVDPGNLFR 521 (539)
Q Consensus 494 ~~~~~yyg-~n~~RL~~IK~kyDP~~vF~ 521 (539)
.|....|| ..++-|++||+.+||+|+|.
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 36666666 47999999999999999985
No 52
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=57.85 E-value=23 Score=39.42 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.7
Q ss_pred hhHHhhhhh-cHHHHHHHHhhcCCCCCCcc
Q 046361 494 TWGVKYFKE-NFNRLVRVKINVDPGNLFRH 522 (539)
Q Consensus 494 ~~~~~yyg~-n~~RL~~IK~kyDP~~vF~~ 522 (539)
.|-..+||+ .++-+++||+.+||+|++.-
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNP 545 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNP 545 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCC
Confidence 577778884 69999999999999999953
No 53
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=57.41 E-value=21 Score=39.18 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.0
Q ss_pred hhHHhhhh-hcHHHHHHHHhhcCCCCCCccCC
Q 046361 494 TWGVKYFK-ENFNRLVRVKINVDPGNLFRHEQ 524 (539)
Q Consensus 494 ~~~~~yyg-~n~~RL~~IK~kyDP~~vF~~~q 524 (539)
.|-...|| +.++-+++||+.+||+|++.--.
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk 470 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGK 470 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 34455566 57999999999999999995433
No 54
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=54.55 E-value=33 Score=37.38 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=52.9
Q ss_pred cHHHHhhhcCCCCCCCce-eecCCCcChHHHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhc-CCeEEEE-
Q 046361 30 NFIKCLTANSEVYIPFSN-FYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHL-RIHLRAR- 106 (539)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~-v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~-~~~v~v~- 106 (539)
.|.+-.+++.. ++.+ ++.-+=|+-+.+.. .+..+. ....|-..+.|.|.++|..+++.|.++ ..||.+.
T Consensus 112 rLv~kara~G~---~I~gvvIsAGIP~le~A~E-lI~~L~----~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~ 183 (717)
T COG4981 112 RLVQKARASGA---PIDGVVISAGIPSLEEAVE-LIEELG----DDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQW 183 (717)
T ss_pred HHHHHHHhcCC---CcceEEEecCCCcHHHHHH-HHHHHh----hcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEE
Confidence 36666666653 3567 77777788777643 232222 234899999999999999999999998 4677663
Q ss_pred ----eCCC-CCCC
Q 046361 107 ----SGGH-DYEG 114 (539)
Q Consensus 107 ----ggGh-~~~g 114 (539)
+||| ||..
T Consensus 184 egGraGGHHSweD 196 (717)
T COG4981 184 EGGRAGGHHSWED 196 (717)
T ss_pred ecCccCCccchhh
Confidence 3454 4653
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=47.74 E-value=10 Score=40.18 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=19.3
Q ss_pred hcHHHHHHHHhhcCCCCCCcc
Q 046361 502 ENFNRLVRVKINVDPGNLFRH 522 (539)
Q Consensus 502 ~n~~RL~~IK~kyDP~~vF~~ 522 (539)
.|+++-.++|+++||.++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 799999999999999999943
No 56
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=42.36 E-value=16 Score=38.08 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.9
Q ss_pred hhc-HHHHHHHHhhcCCCCCCc
Q 046361 501 KEN-FNRLVRVKINVDPGNLFR 521 (539)
Q Consensus 501 g~n-~~RL~~IK~kyDP~~vF~ 521 (539)
..+ .+-.++||+++||.++|+
T Consensus 323 ~~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCC
Confidence 345 788899999999999995
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.76 E-value=47 Score=33.94 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=39.0
Q ss_pred eecCCCcChHHHHhhcccccccCCCCCCCceEEEecCC------HHHHHHHHHHHHhc------CCeEEEEeCCC
Q 046361 48 FYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLT------ESHLQAAVICSRHL------RIHLRARSGGH 110 (539)
Q Consensus 48 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dv~~~v~~a~~~------~~~v~v~ggGh 110 (539)
|..|....|.+.+.. -+.||. ....+++|.. +++|.++++.+.+. ++=|.+||||.
T Consensus 20 ITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 20 ITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 445667778887642 344775 4667777755 67999999999865 46677888874
No 58
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=34.98 E-value=1.2e+02 Score=30.18 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=65.6
Q ss_pred ccccccHHHHhhhcCCCCCCCceeecCCCcChHHHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEE
Q 046361 25 ISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLR 104 (539)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~ 104 (539)
....++..+-|....- ++..+++|+-++.+.+.. . ...++.+|+.++-+...+.|.+-+
T Consensus 115 ~Ll~~~a~~~l~~~Ll---P~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~V 173 (263)
T COG0351 115 PLLDEEAVEALREELL---PLATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAV 173 (263)
T ss_pred cccChHHHHHHHHHhh---ccCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEE
Confidence 3344555555554432 234599999888776532 1 267899999999999999998877
Q ss_pred EEeCCCCCCCCccccCCCCCeEEEEcCCCCcE---EEeCCCCEEEEeCCCCHHHHHHHHHhcC
Q 046361 105 ARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI---EVDINNKTAWVQAGATIGELYYRISEKS 164 (539)
Q Consensus 105 v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v---~vd~~~~~v~v~aG~~~~~l~~~l~~~g 164 (539)
+.=|||... . .. .++.|-..+..+ .++.. =+=|.||++......-..+|
T Consensus 174 liKGGH~~~-~--~~-----D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 174 LIKGGHLEG-E--AV-----DVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEcCCCCCC-C--ce-----eEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 777888765 1 11 244443322221 12211 13578999876655544444
No 59
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=34.69 E-value=2.4e+02 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=32.2
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCeEEEEeCC
Q 046361 76 KPEFIFTPLTESHLQAAVICSRHLRIHLRARSGG 109 (539)
Q Consensus 76 ~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggG 109 (539)
....|+.|+-.|-...+-+.+.++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 4779999999999999999999999999999998
No 60
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.50 E-value=49 Score=35.56 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=40.3
Q ss_pred eecCCCcChHHHHhhcccccccCCCCCCCceEEEecCCH------HHHHHHHHHHHhc--CCeEEEEeCC
Q 046361 48 FYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTE------SHLQAAVICSRHL--RIHLRARSGG 109 (539)
Q Consensus 48 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~------~dv~~~v~~a~~~--~~~v~v~ggG 109 (539)
|..|....+.+.+. .-+.||+. -...++|..+ .+|.++++.+.+. ++=|.+||||
T Consensus 141 iTs~~gAa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 141 ITSPTGAAIRDILT--VLRRRFPL-----VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EeCCccHHHHHHHH--HHHhcCCC-----CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 55666777888764 34677753 5677777665 8999999998874 6678888888
No 61
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.54 E-value=59 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=30.6
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRA 105 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v 105 (539)
||.. ...|..||..++++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5765 34899999999999999999999999886544
No 62
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=25.92 E-value=94 Score=28.08 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=26.2
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCeEEEEe
Q 046361 78 EFIFTPLTESHLQAAVICSRHLRIHLRARS 107 (539)
Q Consensus 78 ~~vv~P~s~~dv~~~v~~a~~~~~~v~v~g 107 (539)
..|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 357999999999999999998887888873
No 63
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=25.56 E-value=74 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCC
Q 046361 89 LQAAVICSRHLRIHLRARSGGHDYE 113 (539)
Q Consensus 89 v~~~v~~a~~~~~~v~v~ggGh~~~ 113 (539)
..+.++|++++++||.|.++|.++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 3557889999999999999999864
No 64
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=24.93 E-value=42 Score=37.38 Aligned_cols=28 Identities=7% Similarity=0.353 Sum_probs=23.2
Q ss_pred hhhHHhhhhhcHHHHHHHHhhcCCCCCCccC
Q 046361 493 ATWGVKYFKENFNRLVRVKINVDPGNLFRHE 523 (539)
Q Consensus 493 ~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 523 (539)
+.+.+.| + +.+-.++++++||+|+|.++
T Consensus 537 ~~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 537 ERLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 3566665 4 99999999999999999875
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=24.91 E-value=42 Score=37.06 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=21.3
Q ss_pred hHHhhhhhcHHHHHHHHhhcCCCCCCccC
Q 046361 495 WGVKYFKENFNRLVRVKINVDPGNLFRHE 523 (539)
Q Consensus 495 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 523 (539)
|.+.| + +.+-.+|++++||+++|.++
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 55555 3 78889999999999999875
No 66
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=23.82 E-value=1.5e+02 Score=25.72 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=30.7
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEEE
Q 046361 68 RYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRAR 106 (539)
Q Consensus 68 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ 106 (539)
+|++ ....|+...+++|+.++-+.|++.+++..++
T Consensus 51 ~~~g----~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 51 NLDN----MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred HhCC----CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3654 8999999999999999999999999887664
No 67
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.64 E-value=56 Score=35.11 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=37.8
Q ss_pred eecCCCcChHHHHhhcccccccCC-CCCCCceEEEecCCHHHHHHHHHHHHhc---CCeEEEEeCCC
Q 046361 48 FYTPNNPSFLSVLESSAQNLRYLV-PSMPKPEFIFTPLTESHLQAAVICSRHL---RIHLRARSGGH 110 (539)
Q Consensus 48 v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~P~s~~dv~~~v~~a~~~---~~~v~v~ggGh 110 (539)
|..|....+.+.+. .-+.||.. .....|..|==...+.+|.++++.+.+. ++=|.+||||.
T Consensus 135 its~~~aa~~D~~~--~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 135 ITSQTGAALADILH--ILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EeCCccHHHHHHHH--HHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 55666777888764 34567753 2222333333334567999999988763 45677777773
No 68
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.51 E-value=1.3e+02 Score=27.87 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=27.0
Q ss_pred eEEEecCCHHHHHHHHHHHHh--cCCeEEEEeCC
Q 046361 78 EFIFTPLTESHLQAAVICSRH--LRIHLRARSGG 109 (539)
Q Consensus 78 ~~vv~P~s~~dv~~~v~~a~~--~~~~v~v~ggG 109 (539)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 678999999999999999999 67899988654
No 69
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=21.92 E-value=2e+02 Score=29.16 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=40.2
Q ss_pred CCceeecCCCcChHHHHhhcccccccCCCCCCCce-EEEecCCHHHHHHHHHHHHhcCCeEEEEeC
Q 046361 44 PFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPE-FIFTPLTESHLQAAVICSRHLRIHLRARSG 108 (539)
Q Consensus 44 ~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~P~s~~dv~~~v~~a~~~~~~v~v~gg 108 (539)
++..+=+|.+-+|.+.++. +|. -++..-.+++|.+++..+.+.++|+++.|-
T Consensus 238 dl~siP~p~~vd~~~wlk~-------------ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~Ge 290 (324)
T COG2144 238 DLDSIPYPADVDFRQWLKR-------------YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGE 290 (324)
T ss_pred eecccCCcccccHHHHHHh-------------CCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEE
Confidence 3444778898899886542 355 666677778999999999999999999874
No 70
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.75 E-value=70 Score=20.31 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=9.6
Q ss_pred hcHHHHHHHHhh
Q 046361 502 ENFNRLVRVKIN 513 (539)
Q Consensus 502 ~n~~RL~~IK~k 513 (539)
+=|+||++||.-
T Consensus 11 eFY~rlk~Ike~ 22 (28)
T PF12108_consen 11 EFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 459999999963
No 71
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=20.20 E-value=37 Score=25.28 Aligned_cols=36 Identities=28% Similarity=0.759 Sum_probs=24.5
Q ss_pred hhhHHhhhhhcHHHHHHHHhhcCCCCCCccCCCCCCCccccc
Q 046361 493 ATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESM 534 (539)
Q Consensus 493 ~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~qsi~~~~~~~~ 534 (539)
+.|.+ +.++.+...-.+.+||.-+|. +|+|.-+|.+
T Consensus 19 P~WA~---~~~L~~~L~~Q~~~Dpd~IFG---~~~~~~Leei 54 (57)
T PF03941_consen 19 PSWAQ---SPNLRQALKKQQNIDPDEIFG---PIPPLNLEEI 54 (57)
T ss_dssp -GGGS---HHHHHHHHHHHHHS-HHHHCT---TSB---CCCC
T ss_pred CCCcC---cHHHHHHHHHHhccCHHHHcC---CCCCCCHHHH
Confidence 36887 578999888899999999996 3666666643
No 72
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.04 E-value=63 Score=34.54 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=37.0
Q ss_pred eecCCCcChHHHHhhcccccccCCCCCCCceEEEecCC------HHHHHHHHHHHHhcC-C--eEEEEeCC
Q 046361 48 FYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLT------ESHLQAAVICSRHLR-I--HLRARSGG 109 (539)
Q Consensus 48 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dv~~~v~~a~~~~-~--~v~v~ggG 109 (539)
|..|......+.+. .-..||+. -..+++|.. .++|.++|+.|++.+ + =|+.||||
T Consensus 141 ITS~tgAairDIl~--~~~rR~P~-----~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 141 ITSPTGAALRDILH--TLSRRFPS-----VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred EcCCchHHHHHHHH--HHHhhCCC-----CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 55666666766653 33567863 556666654 579999999999986 4 45556665
Done!