Query 046362
Match_columns 334
No_of_seqs 227 out of 1738
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 3.8E-69 8.3E-74 529.2 40.3 322 1-331 115-438 (443)
2 PLN02218 polygalacturonase ADP 100.0 8.6E-66 1.9E-70 503.4 37.3 295 1-309 130-428 (431)
3 PLN03003 Probable polygalactur 100.0 2.2E-65 4.8E-70 499.7 37.3 302 1-320 87-393 (456)
4 PLN03010 polygalacturonase 100.0 1.3E-64 2.8E-69 491.2 37.8 292 1-317 111-404 (409)
5 PLN02155 polygalacturonase 100.0 1.6E-64 3.5E-69 489.4 37.8 303 1-318 89-394 (394)
6 PLN02188 polygalacturonase/gly 100.0 5.9E-64 1.3E-68 487.3 39.2 303 3-316 98-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 6.9E-60 1.5E-64 450.5 30.8 286 2-301 36-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.4E-34 3.1E-39 286.9 20.6 218 2-227 142-405 (542)
9 PLN02793 Probable polygalactur 99.9 6.1E-21 1.3E-25 188.2 27.0 197 19-258 176-397 (443)
10 PLN02188 polygalacturonase/gly 99.9 2.8E-20 6.1E-25 181.5 29.4 214 3-258 130-377 (404)
11 PLN02218 polygalacturonase ADP 99.9 1.1E-20 2.4E-25 185.6 26.5 196 19-257 191-410 (431)
12 PF00295 Glyco_hydro_28: Glyco 99.9 2.2E-20 4.7E-25 178.6 26.2 196 19-257 91-310 (326)
13 PLN02155 polygalacturonase 99.9 2.2E-20 4.7E-25 181.7 26.4 197 20-258 145-366 (394)
14 PLN03003 Probable polygalactur 99.9 4.4E-20 9.6E-25 181.3 27.0 212 3-258 121-360 (456)
15 PLN03010 polygalacturonase 99.8 1.4E-17 3.1E-22 162.5 29.9 251 3-297 81-359 (409)
16 PF03718 Glyco_hydro_49: Glyco 99.8 1.7E-16 3.6E-21 155.3 22.3 248 21-286 270-555 (582)
17 COG5434 PGU1 Endopygalactoruna 99.4 5.1E-12 1.1E-16 126.4 19.0 215 24-256 170-396 (542)
18 TIGR03808 RR_plus_rpt_1 twin-a 99.2 1.6E-09 3.5E-14 105.6 17.6 118 4-144 90-208 (455)
19 TIGR03805 beta_helix_1 paralle 99.2 1.9E-09 4.1E-14 102.7 17.7 162 28-219 31-202 (314)
20 PF12541 DUF3737: Protein of u 98.9 2.8E-08 6.1E-13 90.2 12.5 130 65-224 89-229 (277)
21 PF12541 DUF3737: Protein of u 98.6 3.5E-07 7.6E-12 83.2 10.0 103 71-197 113-231 (277)
22 TIGR03805 beta_helix_1 paralle 98.6 1.5E-05 3.2E-10 76.1 21.1 154 69-228 79-251 (314)
23 PF13229 Beta_helix: Right han 98.5 1.6E-06 3.4E-11 72.8 11.2 138 70-226 3-144 (158)
24 smart00656 Amb_all Amb_all dom 98.4 1E-05 2.2E-10 71.7 15.4 98 93-191 34-144 (190)
25 TIGR03808 RR_plus_rpt_1 twin-a 98.4 1.8E-05 4E-10 77.6 18.2 146 69-227 108-291 (455)
26 PF03718 Glyco_hydro_49: Glyco 98.3 2.2E-05 4.7E-10 78.1 14.4 172 92-283 322-513 (582)
27 COG3866 PelB Pectate lyase [Ca 98.2 3.1E-05 6.8E-10 71.9 13.2 123 69-191 94-229 (345)
28 PF13229 Beta_helix: Right han 98.2 2E-05 4.4E-10 66.0 11.2 117 92-228 2-121 (158)
29 PF00544 Pec_lyase_C: Pectate 98.1 3E-05 6.5E-10 69.3 11.7 112 76-191 21-158 (200)
30 PF05048 NosD: Periplasmic cop 98.1 0.00015 3.2E-09 66.0 15.7 112 69-196 37-150 (236)
31 PF05048 NosD: Periplasmic cop 98.1 0.00016 3.5E-09 65.8 15.1 134 69-225 15-150 (236)
32 smart00656 Amb_all Amb_all dom 97.9 0.001 2.2E-08 59.0 16.2 134 70-214 34-188 (190)
33 PF12708 Pectate_lyase_3: Pect 97.9 0.001 2.2E-08 59.2 16.6 123 78-224 94-224 (225)
34 COG3866 PelB Pectate lyase [Ca 97.9 0.0017 3.8E-08 60.5 17.9 121 22-168 94-240 (345)
35 PF12708 Pectate_lyase_3: Pect 97.9 0.00031 6.7E-09 62.6 13.0 110 67-195 112-224 (225)
36 PF00544 Pec_lyase_C: Pectate 97.2 0.0043 9.3E-08 55.4 11.0 88 73-160 43-157 (200)
37 COG3420 NosD Nitrous oxidase a 93.8 4.1 9E-05 39.1 15.7 66 91-157 121-189 (408)
38 PLN02480 Probable pectinestera 93.5 5.4 0.00012 38.6 16.5 77 74-159 130-216 (343)
39 PLN02773 pectinesterase 93.2 2.9 6.3E-05 40.0 14.0 79 71-159 97-181 (317)
40 PF01696 Adeno_E1B_55K: Adenov 92.9 4 8.6E-05 40.0 14.4 86 74-166 119-206 (386)
41 PF03211 Pectate_lyase: Pectat 92.5 6.7 0.00014 35.4 14.4 53 100-158 62-115 (215)
42 PF09251 PhageP22-tail: Salmon 90.9 1.3 2.7E-05 43.6 8.5 57 149-220 311-367 (549)
43 PRK10123 wcaM putative colanic 90.1 1.2 2.7E-05 41.7 7.4 140 76-218 122-283 (464)
44 PLN02480 Probable pectinestera 88.5 11 0.00024 36.5 13.1 112 97-220 130-252 (343)
45 PF01696 Adeno_E1B_55K: Adenov 87.2 12 0.00027 36.7 12.4 84 98-195 120-204 (386)
46 PLN02665 pectinesterase family 86.8 33 0.00071 33.6 16.7 134 70-220 148-298 (366)
47 PF07602 DUF1565: Protein of u 86.5 10 0.00022 34.9 11.1 92 99-198 97-195 (246)
48 PLN02773 pectinesterase 85.2 22 0.00048 34.1 13.0 115 94-221 97-213 (317)
49 PLN02708 Probable pectinestera 84.9 51 0.0011 34.1 16.6 78 73-159 327-409 (553)
50 PF01095 Pectinesterase: Pecti 84.6 16 0.00034 34.7 11.7 77 73-159 84-166 (298)
51 PLN02708 Probable pectinestera 83.7 27 0.00059 36.1 13.7 112 96-220 327-449 (553)
52 PLN02665 pectinesterase family 83.6 37 0.00079 33.3 13.9 115 94-221 149-273 (366)
53 PLN02682 pectinesterase family 83.4 36 0.00078 33.3 13.7 41 125-167 195-235 (369)
54 PLN02416 probable pectinestera 82.9 55 0.0012 33.8 15.5 138 72-220 313-466 (541)
55 TIGR03804 para_beta_helix para 82.1 2.1 4.5E-05 28.0 3.4 26 120-145 2-27 (44)
56 TIGR03804 para_beta_helix para 82.0 2.9 6.4E-05 27.3 4.1 40 93-137 2-41 (44)
57 PLN02197 pectinesterase 81.7 71 0.0015 33.3 16.3 140 72-220 360-514 (588)
58 PLN02432 putative pectinestera 81.6 46 0.00099 31.6 13.4 41 125-167 120-160 (293)
59 PLN02634 probable pectinestera 81.5 34 0.00074 33.4 12.7 41 125-167 181-221 (359)
60 PLN02682 pectinesterase family 81.2 57 0.0012 32.0 15.8 133 71-220 158-305 (369)
61 PLN02916 pectinesterase family 80.5 50 0.0011 33.7 14.0 81 98-190 276-357 (502)
62 PRK10123 wcaM putative colanic 80.1 16 0.00034 34.5 9.4 71 240-310 240-314 (464)
63 PF14592 Chondroitinas_B: Chon 80.0 45 0.00099 33.2 13.2 126 70-200 62-223 (425)
64 PRK10531 acyl-CoA thioesterase 78.8 52 0.0011 32.8 13.2 71 97-167 204-289 (422)
65 PF03211 Pectate_lyase: Pectat 78.7 51 0.0011 29.8 16.2 137 69-214 56-194 (215)
66 PLN02170 probable pectinestera 78.6 63 0.0014 33.2 14.1 82 97-190 311-393 (529)
67 PLN02713 Probable pectinestera 77.9 92 0.002 32.4 15.3 136 73-220 337-489 (566)
68 PLN02671 pectinesterase 77.8 57 0.0012 31.9 13.0 41 125-167 185-225 (359)
69 PLN02995 Probable pectinestera 77.4 93 0.002 32.1 16.6 138 72-220 308-461 (539)
70 PLN02176 putative pectinestera 76.4 77 0.0017 30.7 16.4 82 97-190 120-208 (340)
71 PLN02634 probable pectinestera 75.7 83 0.0018 30.7 15.7 130 73-220 146-291 (359)
72 PLN02201 probable pectinestera 75.5 92 0.002 32.0 14.3 83 96-190 290-373 (520)
73 PLN02506 putative pectinestera 75.2 27 0.00059 36.0 10.5 83 96-190 316-399 (537)
74 PLN02497 probable pectinestera 74.9 68 0.0015 31.0 12.6 41 125-167 149-189 (331)
75 PLN02933 Probable pectinestera 74.4 80 0.0017 32.5 13.6 69 98-168 304-373 (530)
76 PF01095 Pectinesterase: Pecti 74.3 45 0.00098 31.6 11.2 111 97-220 85-202 (298)
77 PLN02713 Probable pectinestera 72.8 36 0.00079 35.3 10.8 82 97-190 338-420 (566)
78 PF07602 DUF1565: Protein of u 72.1 41 0.00088 31.1 9.9 95 124-227 95-195 (246)
79 PRK10531 acyl-CoA thioesterase 70.8 1.2E+02 0.0025 30.4 13.3 145 70-220 200-376 (422)
80 PLN02416 probable pectinestera 70.4 35 0.00076 35.2 10.0 111 97-220 315-432 (541)
81 PLN02484 probable pectinestera 70.1 87 0.0019 32.7 12.9 81 97-189 358-439 (587)
82 PLN02301 pectinesterase/pectin 69.4 42 0.00092 34.7 10.4 68 98-167 322-390 (548)
83 PLN02745 Putative pectinestera 69.2 50 0.0011 34.5 10.9 81 97-189 370-451 (596)
84 PLN02304 probable pectinestera 68.5 65 0.0014 31.7 11.0 81 98-190 161-247 (379)
85 PLN02468 putative pectinestera 68.0 46 0.00099 34.6 10.3 81 97-189 343-424 (565)
86 PLN02468 putative pectinestera 67.8 1.3E+02 0.0028 31.3 13.5 137 72-220 341-490 (565)
87 PLN03043 Probable pectinestera 67.6 53 0.0012 33.9 10.7 82 97-190 311-393 (538)
88 PLN02176 putative pectinestera 67.3 1.3E+02 0.0027 29.3 15.1 131 73-220 119-271 (340)
89 PLN02304 probable pectinestera 66.3 1.4E+02 0.003 29.4 16.6 132 72-220 158-312 (379)
90 PLN02217 probable pectinestera 66.0 1.9E+02 0.0041 30.8 15.3 139 72-220 333-486 (670)
91 PLN02698 Probable pectinestera 66.0 1.4E+02 0.003 30.6 13.2 13 76-88 270-282 (497)
92 PLN02197 pectinesterase 66.0 51 0.0011 34.4 10.2 111 97-220 362-480 (588)
93 PLN02488 probable pectinestera 65.9 65 0.0014 33.0 10.7 81 98-190 283-364 (509)
94 PLN02671 pectinesterase 65.3 1.4E+02 0.0031 29.2 13.2 132 71-220 149-295 (359)
95 PLN02217 probable pectinestera 64.9 43 0.00094 35.4 9.5 111 97-220 335-452 (670)
96 PLN02990 Probable pectinestera 64.0 61 0.0013 33.7 10.3 80 98-189 346-426 (572)
97 PLN02698 Probable pectinestera 63.5 1.6E+02 0.0034 30.2 13.0 113 95-220 266-385 (497)
98 PLN02933 Probable pectinestera 62.6 1.9E+02 0.0042 29.8 17.5 139 72-220 301-454 (530)
99 PLN02314 pectinesterase 62.5 62 0.0013 33.8 10.1 81 97-189 363-444 (586)
100 PLN02313 Pectinesterase/pectin 62.1 2.1E+02 0.0045 30.0 14.4 110 73-192 359-478 (587)
101 PLN02170 probable pectinestera 61.7 2E+02 0.0043 29.7 16.1 135 71-220 308-452 (529)
102 PLN02995 Probable pectinestera 61.6 65 0.0014 33.3 10.0 68 98-167 311-379 (539)
103 PF08480 Disaggr_assoc: Disagg 61.0 1E+02 0.0022 27.3 9.6 15 147-161 62-76 (198)
104 PLN02313 Pectinesterase/pectin 60.7 73 0.0016 33.3 10.3 111 97-220 360-477 (587)
105 PLN02506 putative pectinestera 60.1 2.2E+02 0.0047 29.5 15.4 134 71-220 314-459 (537)
106 PLN02301 pectinesterase/pectin 56.1 2.3E+02 0.0051 29.3 12.9 138 71-220 318-472 (548)
107 PLN02314 pectinesterase 53.7 2.9E+02 0.0062 29.0 15.7 137 72-220 361-509 (586)
108 PLN02432 putative pectinestera 53.7 2E+02 0.0044 27.2 14.4 131 72-220 90-230 (293)
109 PLN02484 probable pectinestera 53.4 2.9E+02 0.0063 28.9 15.6 138 71-220 355-509 (587)
110 PLN02201 probable pectinestera 50.1 3.1E+02 0.0067 28.3 17.4 137 72-220 289-442 (520)
111 PLN02745 Putative pectinestera 49.9 3.3E+02 0.0072 28.6 15.9 136 72-220 368-521 (596)
112 PLN03043 Probable pectinestera 49.4 3.2E+02 0.0069 28.3 15.0 138 71-220 308-462 (538)
113 PLN02990 Probable pectinestera 47.2 3.6E+02 0.0077 28.2 15.8 139 72-220 343-496 (572)
114 COG3420 NosD Nitrous oxidase a 47.0 2.2E+02 0.0047 27.8 10.1 68 91-163 195-263 (408)
115 PLN02497 probable pectinestera 44.2 3.1E+02 0.0066 26.5 13.5 132 72-220 111-264 (331)
116 smart00710 PbH1 Parallel beta- 43.6 27 0.00058 18.9 2.4 10 150-159 3-12 (26)
117 PLN02916 pectinesterase family 36.7 4.9E+02 0.011 26.7 16.1 139 71-220 272-426 (502)
118 PF14592 Chondroitinas_B: Chon 36.3 1.1E+02 0.0024 30.6 6.7 39 126-166 199-241 (425)
119 COG4677 PemB Pectin methyleste 33.6 1E+02 0.0022 29.8 5.6 44 125-168 220-273 (405)
120 PF09251 PhageP22-tail: Salmon 32.9 2.8E+02 0.006 27.9 8.6 67 148-216 263-346 (549)
121 COG4677 PemB Pectin methyleste 24.1 2.4E+02 0.0053 27.3 6.4 45 125-169 193-242 (405)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.8e-69 Score=529.17 Aligned_cols=322 Identities=38% Similarity=0.727 Sum_probs=291.9
Q ss_pred CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEE
Q 046362 1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTV 80 (334)
Q Consensus 1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i 80 (334)
|+|+|++++++++|+....++||++.+++||+|+|.|+|||+|+.||...... ........||++|+|.+|+|++|
T Consensus 115 l~g~l~~~~d~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~----~~~~~~~~rP~~i~f~~~~nv~v 190 (443)
T PLN02793 115 ISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKI----NHTNPCRHAPTAITFHKCKDLRV 190 (443)
T ss_pred EEEEEEccCChHHccCCCCceEEEEecCceEEEEeceEEECCCcccccccccc----cCCCCccCCceEEEEEeeccEEE
Confidence 57999999999999977667899999999999999999999999999753210 00111135899999999999999
Q ss_pred EeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcC
Q 046362 81 RDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGP 160 (334)
Q Consensus 81 ~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~ 160 (334)
+||+++|||+|++++.+|+||+|++++|.++.+.|||||||+.+|+||+|+||+|.++||||++|++++||+|+||+|.+
T Consensus 191 ~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~ 270 (443)
T PLN02793 191 ENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGP 270 (443)
T ss_pred ECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCC-CCCCCC
Q 046362 161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDK-HLCNNQ 239 (334)
Q Consensus 161 ~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~-~~~~~~ 239 (334)
+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|+|++|.|+||+|+||+|+++.+||.|++.|+.. .+|..+
T Consensus 271 GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ 350 (443)
T PLN02793 271 GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQ 350 (443)
T ss_pred CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCC
Confidence 9999999998876668899999999999999999999999999999999999999999999999999999763 356656
Q ss_pred CCceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccCCcccccccc
Q 046362 240 TGAVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRR 318 (334)
Q Consensus 240 ~~~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P~~~~~c~~~ 318 (334)
++.+.|+||+|+||+++... .++.|.|.++.||+||+|+||+|+...|+. ....|+|++|...+++.|+ +|+.+
T Consensus 351 ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~--~~~~C~n~~g~~~~~~~p~---~C~~~ 425 (443)
T PLN02793 351 TSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDF--TESFCWEAYGSSSGQVYPP---PCFSD 425 (443)
T ss_pred CCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCC--CCcEEEccEEeECCeEcCC---ccccC
Confidence 67789999999999999754 378999999999999999999999887653 4688999999999999998 99999
Q ss_pred ccccccccccccc
Q 046362 319 DSGSVKRIARSHE 331 (334)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (334)
+.+++++-+.||.
T Consensus 426 ~~~~~~~~~~~~~ 438 (443)
T PLN02793 426 STSFIKQKVQSGS 438 (443)
T ss_pred CCcccccccCCcc
Confidence 9999999998874
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=8.6e-66 Score=503.42 Aligned_cols=295 Identities=41% Similarity=0.753 Sum_probs=267.1
Q ss_pred CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEec--cEEEcCCccccCCCCCccccccCCCCC-CCCCeEEEEEeEec
Q 046362 1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGN--GIVDGQGFEWWGGSQSNSIQKKSKHIP-EMKPTALRFYASYN 77 (334)
Q Consensus 1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~--G~idG~G~~~w~~~~~~~~~~~~~~~~-~~rP~~i~~~~~~n 77 (334)
|+|+|++++++++|+.. ..||+|.+++||+|+|. |+|||+|+.||...... . +..+ ..||++++|.+|+|
T Consensus 130 l~g~L~~s~d~~~y~~~--~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~--~---~~~~~~~rP~~i~f~~~~n 202 (431)
T PLN02218 130 IFGTLSASQKRSDYKDI--SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKR--N---KAKPCTKAPTALTFYNSKS 202 (431)
T ss_pred EEEEEEeCCChhhcccc--ccCEEEecCcEEEEECCCCcEEeCCchhhhhccccc--C---CcCccCcCCEEEEEEcccc
Confidence 47999999999999753 57999999999999997 99999999999754311 0 1111 36999999999999
Q ss_pred EEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEE
Q 046362 78 VTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHIS 157 (334)
Q Consensus 78 v~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~ 157 (334)
++|+||+|+|||+|++++.+|+||+|+|++|.++.+.|||||||+.+|+||+|+||+|.+|||||+||+|++||+|+||+
T Consensus 203 v~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~ 282 (431)
T PLN02218 203 LIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDIT 282 (431)
T ss_pred EEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEE
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EcCCceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCCCCCC
Q 046362 158 CGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCN 237 (334)
Q Consensus 158 ~~~~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~~~~ 237 (334)
|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+||||++|++|.|+||+|+||+|+++++||.|++.|++...|.
T Consensus 283 c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 283 CGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCT 362 (431)
T ss_pred EECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCC
Confidence 99999999999987655679999999999999999999999999999999999999999999999999999998766566
Q ss_pred CCCCceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccC
Q 046362 238 NQTGAVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVP 309 (334)
Q Consensus 238 ~~~~~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P 309 (334)
.++..+.|+||+|+||+++.+. .++.|.|.++.||+||+|+||+|+.. ...|+||+|...+.+.|
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-------~~~c~n~~~~~~~~~~p 428 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-------KATCTNANVVDKGAVSP 428 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-------eeeEEEeeEEEcccCCC
Confidence 5567789999999999999764 37899999999999999999999852 35799999999997766
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.2e-65 Score=499.69 Aligned_cols=302 Identities=38% Similarity=0.725 Sum_probs=268.3
Q ss_pred CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEE
Q 046362 1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTV 80 (334)
Q Consensus 1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i 80 (334)
++|+|+++.. .+|+.. ..+||+|.+++|++|+|.|+|||+|+.||... ..||++++|.+|+|+.|
T Consensus 87 i~G~i~ap~~-~~w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-------------~~rP~~l~f~~~~nv~I 151 (456)
T PLN03003 87 MLGKLVAPSK-GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-------------GSRPTALKFRSCNNLRL 151 (456)
T ss_pred cCceEecCcc-ccccCC-CcceEEEEcccceEEeccceEeCCchhhhhcc-------------cCCceEEEEEecCCcEE
Confidence 5788998654 567543 35799999999999999999999999999742 25999999999999999
Q ss_pred EeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcC
Q 046362 81 RDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGP 160 (334)
Q Consensus 81 ~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~ 160 (334)
+||+++|||+|++++.+|++|+|++++|.++.+.|||||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|.+
T Consensus 152 ~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~ 231 (456)
T PLN03003 152 SGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGP 231 (456)
T ss_pred eCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEEC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCCCC---CC
Q 046362 161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHL---CN 237 (334)
Q Consensus 161 ~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~~---~~ 237 (334)
+|||+|||+|++...+.|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++++||.|++.|+...+ |.
T Consensus 232 GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~ 311 (456)
T PLN03003 232 GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD 311 (456)
T ss_pred CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCccc
Confidence 999999999876555789999999999999999999999999999999999999999999999999999985432 33
Q ss_pred CCCCceeEeeEEEEEEEEeeccc-cEEEEcCCCCCeecEEEEeEEEEcCC-CcccccceeeeceEEeecccccCCccccc
Q 046362 238 NQTGAVAISGVEFNQIIGTYSVQ-PIHLACSNSVPCSDVDLIDIQLKPSS-KYQSFQQALCWNSYGKSQAPLVPSSIDYC 315 (334)
Q Consensus 238 ~~~~~~~i~nIt~~nI~~t~~~~-~~~i~~~~~~~~~nI~f~nv~i~~~~-g~~~~~~~~c~~v~g~~~~~~~P~~~~~c 315 (334)
.+.+.+.|+||+|+||+|+.... ++.|.|++..||+||+|+||.++... +....+.+.|+||+|...+.+.|+ +|
T Consensus 312 ~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~---~C 388 (456)
T PLN03003 312 RKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGL---EC 388 (456)
T ss_pred CCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCC---Cc
Confidence 34557899999999999987644 78999999999999999999999874 222235799999999888755554 89
Q ss_pred ccccc
Q 046362 316 LRRDS 320 (334)
Q Consensus 316 ~~~~~ 320 (334)
+...+
T Consensus 389 ~~~~~ 393 (456)
T PLN03003 389 LELST 393 (456)
T ss_pred cccCC
Confidence 97653
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.3e-64 Score=491.21 Aligned_cols=292 Identities=39% Similarity=0.691 Sum_probs=270.6
Q ss_pred CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEE
Q 046362 1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTV 80 (334)
Q Consensus 1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i 80 (334)
|+|+|++++++++|+......||.|.+++||+|+|.|+|||+|+.||. +++|.+|+|++|
T Consensus 111 l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------------------~l~~~~~~nv~v 170 (409)
T PLN03010 111 LDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------------------ALHISKCDNLTI 170 (409)
T ss_pred EccEEEccCChhhccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------------eEEEEeecCeEE
Confidence 579999999999998655567999999999999999999999999994 588999999999
Q ss_pred EeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcC
Q 046362 81 RDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGP 160 (334)
Q Consensus 81 ~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~ 160 (334)
+||+++|||+|++++.+|++|+|++++|.++..++||||||+.+|+||+|+||+|.++||||++|+++.|+.|+++.|..
T Consensus 171 ~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~ 250 (409)
T PLN03010 171 NGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGP 250 (409)
T ss_pred eeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeEC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCC-CCCCCC
Q 046362 161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDK-HLCNNQ 239 (334)
Q Consensus 161 ~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~-~~~~~~ 239 (334)
+|||+|||+|+..+.+.|+||+|+||+|.++.+|+|||+++|++|.|+||+|+||+|+++++||.|++.|+.. ..|+.+
T Consensus 251 gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~ 330 (409)
T PLN03010 251 GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATK 330 (409)
T ss_pred cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCC
Confidence 9999999998765567899999999999999999999999999999999999999999999999999999874 346656
Q ss_pred CCceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccCCccccccc
Q 046362 240 TGAVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLR 317 (334)
Q Consensus 240 ~~~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P~~~~~c~~ 317 (334)
+..+.|+||+|+||+||... .++.|.|++..||+||+|+||+++...+.+ +.+.|.|++|...+++.|+ +||.
T Consensus 331 ~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~--~~~~C~nv~g~~~~~~~~~---~C~~ 404 (409)
T PLN03010 331 DSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEK--PKVECQNVEGESSDTDLMR---DCFK 404 (409)
T ss_pred CCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCc--cceEeeCccccccCCCCCC---cccc
Confidence 78899999999999998654 388999999999999999999999887654 5799999999999988887 8993
No 5
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.6e-64 Score=489.41 Aligned_cols=303 Identities=34% Similarity=0.652 Sum_probs=269.7
Q ss_pred CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEE
Q 046362 1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTV 80 (334)
Q Consensus 1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i 80 (334)
|+|+|++++++.+|... ..||.|.+++|+.|+| |+|||||+.||..... + .....||++++|..|+|++|
T Consensus 89 l~G~l~~~~d~~~~~~~--~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~-----~--~~~~~~p~~i~~~~~~nv~i 158 (394)
T PLN02155 89 VAGTVVAPEDYRTFGNS--GYWILFNKVNRFSLVG-GTFDARANGFWSCRKS-----G--QNCPPGVRSISFNSAKDVII 158 (394)
T ss_pred EeeEEECcccccccccc--ceeEEEECcCCCEEEc-cEEecCceeEEEcccC-----C--CCCCCcccceeEEEeeeEEE
Confidence 57899999888777543 3599999999999999 9999999999974321 0 01124788999999999999
Q ss_pred EeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcC
Q 046362 81 RDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGP 160 (334)
Q Consensus 81 ~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~ 160 (334)
+||+++|||+|++++..|+||+|++++|.++.++|||||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..
T Consensus 159 ~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~ 238 (394)
T PLN02155 159 SGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGP 238 (394)
T ss_pred ECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEEC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecC-CcceEEeEEEEeEEEeCCceeEEEEeeecCCC-CCCC
Q 046362 161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQG-GIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKH-LCNN 238 (334)
Q Consensus 161 ~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g-~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~-~~~~ 238 (334)
+|||+|||+|++++.+.|+||+|+||+|.++.+|+|||||.+ ++|.|+||+|+||+|++++.||.|++.|+... .|++
T Consensus 239 GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~ 318 (394)
T PLN02155 239 GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPN 318 (394)
T ss_pred CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcC
Confidence 999999999887667899999999999999999999999865 67999999999999999999999999997643 3544
Q ss_pred CCCceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccCCccccccc
Q 046362 239 QTGAVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLR 317 (334)
Q Consensus 239 ~~~~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P~~~~~c~~ 317 (334)
+.+.+.|+||+|+||+++... .++.|.|.+..||+||+|+||+++...+.+ +.+.|+|++|...+++.|+ +|+.
T Consensus 319 ~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~--~~~~C~n~~G~~~~~~~p~---~c~~ 393 (394)
T PLN02155 319 EYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTP--ATSFCFNAVGKSLGVIQPT---SCLN 393 (394)
T ss_pred CCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCc--cCcEEeccEeEEcccCCcc---cccC
Confidence 456789999999999999764 378999999999999999999999986543 5799999999998877776 8986
Q ss_pred c
Q 046362 318 R 318 (334)
Q Consensus 318 ~ 318 (334)
|
T Consensus 394 ~ 394 (394)
T PLN02155 394 R 394 (394)
T ss_pred C
Confidence 4
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=5.9e-64 Score=487.33 Aligned_cols=303 Identities=37% Similarity=0.624 Sum_probs=269.0
Q ss_pred EEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEe
Q 046362 3 GTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRD 82 (334)
Q Consensus 3 g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~g 82 (334)
-+|++++|+++|+.. ..|+.+.+++||+|+|.|+|||+|+.||...... .......||++|+|..|+|+.|+|
T Consensus 98 l~L~~s~d~~~y~~~--~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~-----~~~~~~~rP~~i~f~~~~nv~i~g 170 (404)
T PLN02188 98 FTLKAATDLSRYGSG--NDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCP-----IRKDCKLLPTSVKFVNMNNTVVRG 170 (404)
T ss_pred EEEEcCCCHHHCCCc--cceEEEeceeeEEEEeeEEEeCCCcccccccccc-----cCCCCCcCceEEEEEeeeeEEEeC
Confidence 379999999999853 5699999999999999999999999999743210 011123699999999999999999
Q ss_pred EEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCc
Q 046362 83 IKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGH 162 (334)
Q Consensus 83 i~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~ 162 (334)
|+++|||+|++++..|+||+|++++|.++.++|||||||+.+|+||+|+||+|.++||||++|++++||+|+||.|..+|
T Consensus 171 itl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~gh 250 (404)
T PLN02188 171 ITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGH 250 (404)
T ss_pred eEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecC--CcceEEeEEEEeEEEeCCceeEEEEeeecCCCCCC-CC
Q 046362 163 GISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQG--GIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCN-NQ 239 (334)
Q Consensus 163 gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g--~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~~~~-~~ 239 (334)
||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|.+ ++|.|+||+|+||+|++++.||.|++.|+....|. .+
T Consensus 251 GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~ 330 (404)
T PLN02188 251 GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKY 330 (404)
T ss_pred cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCC
Confidence 9999999876666889999999999999999999999975 45899999999999999999999999998654443 22
Q ss_pred CCceeEeeEEEEEEEEeeccc-cEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccCCcccccc
Q 046362 240 TGAVAISGVEFNQIIGTYSVQ-PIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCL 316 (334)
Q Consensus 240 ~~~~~i~nIt~~nI~~t~~~~-~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P~~~~~c~ 316 (334)
...+.|+||+|+||+++.... ++.|.|.++.||+||+|+||+++.+.+.. ...+.|++++|+..+.+.|+ +|.
T Consensus 331 ~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~-~~~~~C~nv~g~~~g~~~p~---~C~ 404 (404)
T PLN02188 331 PSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEG-GTSSSCENVRAKYIGTQIPP---PCP 404 (404)
T ss_pred CCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCC-CcCceeEcceeEEcccCcCC---CCC
Confidence 356899999999999987643 78999999999999999999999876543 34699999999999988887 884
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=6.9e-60 Score=450.55 Aligned_cols=286 Identities=36% Similarity=0.651 Sum_probs=244.6
Q ss_pred cEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEE
Q 046362 2 DGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVR 81 (334)
Q Consensus 2 ~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~ 81 (334)
+|++.++.....|+. .+||++.+++|++|+|+|+|||+|+.||+..... ......||++++|..|+|++|+
T Consensus 36 ~G~~~~~~~~~~~~~---~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~------~~~~~~rp~~i~~~~~~~~~i~ 106 (326)
T PF00295_consen 36 DGTINFSYDNWEGPN---SALIYAENAENITITGKGTIDGNGQAWWDGSGDA------NNNGQRRPRLIRFNNCKNVTIE 106 (326)
T ss_dssp ESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTH------CCSSSSSSESEEEEEEEEEEEE
T ss_pred EEEEEeCCCcccCCc---cEEEEEEceEEEEecCCceEcCchhhhhcccccc------ccccccccceeeeeeecceEEE
Confidence 455666544444442 7899999999999999999999999999865421 0123479999999999999999
Q ss_pred eEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCC
Q 046362 82 DIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPG 161 (334)
Q Consensus 82 gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~ 161 (334)
||+++|||+|++++..|+||+|++++|.++...+|+||||+.+|+||+|+||+|.++||||++|++..||+|+||+|.++
T Consensus 107 ~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~g 186 (326)
T PF00295_consen 107 GITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGG 186 (326)
T ss_dssp SEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESS
T ss_pred eeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEecc
Confidence 99999999999999999999999999999887899999999999999999999999999999999888999999999999
Q ss_pred ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCCCCCCCCCC
Q 046362 162 HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTG 241 (334)
Q Consensus 162 ~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~~~~~~~~ 241 (334)
||++|||++.......|+||+|+||+|.++.+|++||++++++|.|+||+||||+|+++.+||.|++.|....++..++.
T Consensus 187 hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~ 266 (326)
T PF00295_consen 187 HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPS 266 (326)
T ss_dssp SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSS
T ss_pred ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccC
Confidence 99999999753323469999999999999999999999999999999999999999999999999999987555555556
Q ss_pred ceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEE
Q 046362 242 AVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYG 301 (334)
Q Consensus 242 ~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g 301 (334)
.+.|+||+|+||+++... .++.|.|.+..||+||+|+||+|+. +. ..+.|.++..
T Consensus 267 ~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~---~~~~c~nv~~ 322 (326)
T PF00295_consen 267 GVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GK---KPAQCKNVPS 322 (326)
T ss_dssp SSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SB---SESEEBSCCT
T ss_pred CceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CC---cCeEEECCCC
Confidence 789999999999999875 4889999999999999999999999 32 3489999864
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-34 Score=286.88 Aligned_cols=218 Identities=28% Similarity=0.458 Sum_probs=181.6
Q ss_pred cEEEEcCCCCCCCCC-C-----CCc-----------------------ccEEEEceEeeE-EEeccEEEcCC----cccc
Q 046362 2 DGTLLAPPKVGSWPK-S-----SLF-----------------------QWINFKWLHNFT-IQGNGIVDGQG----FEWW 47 (334)
Q Consensus 2 ~g~L~~s~~~~~y~~-~-----~~~-----------------------~~i~~~~~~Nv~-I~G~G~idG~G----~~~w 47 (334)
++||++++++++||. . ... .++.....+|.. |.|.|+++|++ .+||
T Consensus 142 gatl~~~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~ 221 (542)
T COG5434 142 GATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWF 221 (542)
T ss_pred CceeeCCCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhh
Confidence 359999999999993 1 011 222233345665 88888888864 2266
Q ss_pred CCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeec
Q 046362 48 GGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKD 127 (334)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~n 127 (334)
...+....+... ...||.++.|..|.||+++|+++.|+|.|++|+..|+|++++|++|.+.... |+||||+.+|+|
T Consensus 222 ~~~g~~~~~i~~---~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~N 297 (542)
T COG5434 222 SGLGAVETRIGG---KGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSN 297 (542)
T ss_pred hcccchhhcccc---cCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCcccccccee
Confidence 544411111111 1169999999999999999999999999999999999999999999998654 999999999999
Q ss_pred EEEEeeEEecCCCeeeecCC-----------ceeEEEEeEEEcCCce-EEEeccCccCCCCcEEEEEEEeEEEecCCceE
Q 046362 128 VEIQHSDIACGDDCVSIQTG-----------CSNVHIHHISCGPGHG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV 195 (334)
Q Consensus 128 V~I~n~~i~~gDD~i~iksg-----------~~nI~I~nc~~~~~~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi 195 (334)
|+|++|+|.++||||++|++ ++||+|+||++..+|| +.+||| ++++|+||++|||.|.++.+||
T Consensus 298 vlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 298 VLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred EEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCccee
Confidence 99999999999999999986 5899999999999996 999997 6789999999999999999999
Q ss_pred EEeeecCCcceEEeEEEEeEEEeCCceeEEEE
Q 046362 196 RIKTWQGGIGSVKNVSFSSIQVWDVKVPIIID 227 (334)
Q Consensus 196 ~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~ 227 (334)
|||+..+++|.++||+|++++|.++..+..|.
T Consensus 374 Rikt~~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 374 RIKTNDGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeeeecccceeEEEEEEecccccCcccceeee
Confidence 99999999999999999999999996555554
No 9
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=6.1e-21 Score=188.18 Aligned_cols=197 Identities=17% Similarity=0.258 Sum_probs=162.6
Q ss_pred CcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCC----CCceE
Q 046362 19 LFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSP----LCHLK 94 (334)
Q Consensus 19 ~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~----~~~i~ 94 (334)
++.+|.|.+++|++|.|--+.+.. .| .+++..|+||+|++|+|.++. ..+|+
T Consensus 176 rP~~i~f~~~~nv~v~gitl~nSp---~~---------------------~i~~~~~~nv~i~~l~I~~p~~spNTDGId 231 (443)
T PLN02793 176 APTAITFHKCKDLRVENLNVIDSQ---QM---------------------HIAFTNCRRVTISGLKVIAPATSPNTDGIH 231 (443)
T ss_pred CceEEEEEeeccEEEECeEEEcCC---Ce---------------------EEEEEccCcEEEEEEEEECCCCCCCCCcEe
Confidence 356899999999999998777642 34 478999999999999998743 36899
Q ss_pred EecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecC--------CceeEEEEeEEEcC-CceE
Q 046362 95 FDSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQT--------GCSNVHIHHISCGP-GHGI 164 (334)
Q Consensus 95 ~~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks--------g~~nI~I~nc~~~~-~~gi 164 (334)
+..|+||+|+|++|.+.| |+|.+. +|+||+|+||.+..|+ +|+|+| +.+||+|+||++.. .+|+
T Consensus 232 i~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~Gi 305 (443)
T PLN02793 232 ISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGV 305 (443)
T ss_pred eeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceE
Confidence 999999999999999964 678886 6999999999998886 699987 26999999999986 5799
Q ss_pred EEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC----------cceEEeEEEEeEEEeCC-ceeEEEEeeecCC
Q 046362 165 SLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG----------IGSVKNVSFSSIQVWDV-KVPIIIDQYYCDK 233 (334)
Q Consensus 165 ~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~----------~G~i~nI~f~ni~~~~~-~~~i~I~~~y~~~ 233 (334)
+|+|.. +.+|.++||+|+|++|.+..++|.|...+.. ...|+||+|+||+.+.. +.++.|. +
T Consensus 306 rIKt~~--g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~---c-- 378 (443)
T PLN02793 306 RIKTWQ--GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFA---C-- 378 (443)
T ss_pred EEEEeC--CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEE---e--
Confidence 999862 2457899999999999999999999886532 13699999999998875 3466664 2
Q ss_pred CCCCCCCCceeEeeEEEEEEEEeec
Q 046362 234 HLCNNQTGAVAISGVEFNQIIGTYS 258 (334)
Q Consensus 234 ~~~~~~~~~~~i~nIt~~nI~~t~~ 258 (334)
.+..+++||+|+||+.+..
T Consensus 379 ------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 379 ------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred ------CCCCCEeeEEEEeeEEEec
Confidence 2456799999999998754
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.88 E-value=2.8e-20 Score=181.54 Aligned_cols=214 Identities=16% Similarity=0.295 Sum_probs=168.4
Q ss_pred EEEEcCCCCCCCCC---------CCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEE
Q 046362 3 GTLLAPPKVGSWPK---------SSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFY 73 (334)
Q Consensus 3 g~L~~s~~~~~y~~---------~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~ 73 (334)
|+|.+.-. ..|+. ..++.+|.|.+++|+.|.|--+.+. ++| .+++.
T Consensus 130 G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS---p~w---------------------~i~~~ 184 (404)
T PLN02188 130 GTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS---KFF---------------------HIALV 184 (404)
T ss_pred EEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC---CCe---------------------EEEEE
Confidence 67777553 34432 1235688999999999999766653 445 48899
Q ss_pred eEecEEEEeEEEEcCC----CCceEEecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecC--
Q 046362 74 ASYNVTVRDIKINNSP----LCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQT-- 146 (334)
Q Consensus 74 ~~~nv~i~gi~i~n~~----~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks-- 146 (334)
.|+||+|++|+|.++. ..++++..|+||+|.|++|.+.| |+|.+. +++||+|+||.+..++ +|+++|
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-GisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cEEeCCCC
Confidence 9999999999998743 36799999999999999999964 578886 5889999999998775 699977
Q ss_pred ------CceeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecC----------CcceEEe
Q 046362 147 ------GCSNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQG----------GIGSVKN 209 (334)
Q Consensus 147 ------g~~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g----------~~G~i~n 209 (334)
+.+||+|+||++.. .+|+.|+|.......+.++||+|+|++|.+..++|.|.+.+. ....|+|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 26999999999986 579999985211235789999999999999999999986442 1257999
Q ss_pred EEEEeEEEeCC-ceeEEEEeeecCCCCCCCCCCceeEeeEEEEEEEEeec
Q 046362 210 VSFSSIQVWDV-KVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYS 258 (334)
Q Consensus 210 I~f~ni~~~~~-~~~i~I~~~y~~~~~~~~~~~~~~i~nIt~~nI~~t~~ 258 (334)
|+|+||+.+.. +.++.+. + .+..+++||+|+||..+..
T Consensus 339 It~~nI~gt~~~~~a~~l~---c--------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLK---C--------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEEecCceEEEEE---E--------CCCCCEeeEEEEeeEEEec
Confidence 99999999875 4455553 2 2456799999999998754
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=1.1e-20 Score=185.59 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=160.8
Q ss_pred CcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcC---C-CCceE
Q 046362 19 LFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNS---P-LCHLK 94 (334)
Q Consensus 19 ~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~---~-~~~i~ 94 (334)
++.+|.|.+++|++|.|--+.|. ++| .+++.+|+||+|++|++.++ | ..+|+
T Consensus 191 rP~~i~f~~~~nv~I~gitl~nS---p~w---------------------~i~~~~~~nV~i~~v~I~a~~~spNTDGId 246 (431)
T PLN02218 191 APTALTFYNSKSLIVKNLRVRNA---QQI---------------------QISIEKCSNVQVSNVVVTAPADSPNTDGIH 246 (431)
T ss_pred CCEEEEEEccccEEEeCeEEEcC---CCE---------------------EEEEEceeeEEEEEEEEeCCCCCCCCCcEe
Confidence 34578999999999999766653 334 48999999999999999874 2 36899
Q ss_pred EecccCEEEEeEEEECCCCCCCCCceeEeC-eecEEEEeeEEecCCCeeeecCC--------ceeEEEEeEEEcC-CceE
Q 046362 95 FDSSGGIKVKNIHISSPENSPNTDGIHLQN-TKDVEIQHSDIACGDDCVSIQTG--------CSNVHIHHISCGP-GHGI 164 (334)
Q Consensus 95 ~~~~~nV~i~~~~I~~~~~~~ntDGidi~~-s~nV~I~n~~i~~gDD~i~iksg--------~~nI~I~nc~~~~-~~gi 164 (334)
+.+|+||+|+|++|.+.| |+|.+.+ |+||+|+||++..++ +|+|+|. .+||+|+||++.. .+|+
T Consensus 247 i~ss~nV~I~n~~I~tGD-----DcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGv 320 (431)
T PLN02218 247 ITNTQNIRVSNSIIGTGD-----DCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGV 320 (431)
T ss_pred ecccceEEEEccEEecCC-----ceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcce
Confidence 999999999999999965 5788874 899999999998775 6999872 5899999999986 5799
Q ss_pred EEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC---------cceEEeEEEEeEEEeCC-ceeEEEEeeecCCC
Q 046362 165 SLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG---------IGSVKNVSFSSIQVWDV-KVPIIIDQYYCDKH 234 (334)
Q Consensus 165 ~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~---------~G~i~nI~f~ni~~~~~-~~~i~I~~~y~~~~ 234 (334)
+|+|.. +.+|.++||+|+|++|.+..++|.|...+.. ...|+||+|+||+.+.. +.++.+. +
T Consensus 321 RIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~---c--- 392 (431)
T PLN02218 321 RIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFN---C--- 392 (431)
T ss_pred EEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEE---E---
Confidence 999862 3468999999999999999999999876531 24699999999999865 3455554 2
Q ss_pred CCCCCCCceeEeeEEEEEEEEee
Q 046362 235 LCNNQTGAVAISGVEFNQIIGTY 257 (334)
Q Consensus 235 ~~~~~~~~~~i~nIt~~nI~~t~ 257 (334)
.+..+++||+|+||.++.
T Consensus 393 -----s~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 393 -----SKNYPCQGIVLDNVNIKG 410 (431)
T ss_pred -----CCCCCEeeEEEEeEEEEC
Confidence 245689999999999874
No 12
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.88 E-value=2.2e-20 Score=178.61 Aligned_cols=196 Identities=24% Similarity=0.309 Sum_probs=160.8
Q ss_pred CcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCCC----CceE
Q 046362 19 LFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPL----CHLK 94 (334)
Q Consensus 19 ~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~----~~i~ 94 (334)
++.+|.+.+++|++|+|--+.+. +.| .+++.+|+|++|++|+|.+++. .+++
T Consensus 91 rp~~i~~~~~~~~~i~~i~~~ns---p~w---------------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid 146 (326)
T PF00295_consen 91 RPRLIRFNNCKNVTIEGITIRNS---PFW---------------------HIHINDCDNVTISNITINNPANSPNTDGID 146 (326)
T ss_dssp SSESEEEEEEEEEEEESEEEES----SSE---------------------SEEEESEEEEEEESEEEEEGGGCTS--SEE
T ss_pred ccceeeeeeecceEEEeeEecCC---Cee---------------------EEEEEccCCeEEcceEEEecCCCCCcceEE
Confidence 46789999999999999766653 334 3789999999999999998653 5899
Q ss_pred EecccCEEEEeEEEECCCCCCCCCceeEeCee-cEEEEeeEEecCCCeeeecC---C-----ceeEEEEeEEEcC-CceE
Q 046362 95 FDSSGGIKVKNIHISSPENSPNTDGIHLQNTK-DVEIQHSDIACGDDCVSIQT---G-----CSNVHIHHISCGP-GHGI 164 (334)
Q Consensus 95 ~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~-nV~I~n~~i~~gDD~i~iks---g-----~~nI~I~nc~~~~-~~gi 164 (334)
+..|+||+|+|+.|.+. .|+|.+.+.+ ||+|+||++..+. ++++++ + .+||+|+||++.. .+|+
T Consensus 147 ~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi 220 (326)
T PF00295_consen 147 IDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGI 220 (326)
T ss_dssp EESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEE
T ss_pred EEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEEEEEeeccceEE
Confidence 99999999999999996 4679998755 9999999998875 598875 2 4899999999986 5799
Q ss_pred EEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC---------cceEEeEEEEeEEEeCCc-eeEEEEeeecCCC
Q 046362 165 SLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG---------IGSVKNVSFSSIQVWDVK-VPIIIDQYYCDKH 234 (334)
Q Consensus 165 ~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~---------~G~i~nI~f~ni~~~~~~-~~i~I~~~y~~~~ 234 (334)
.|++.. ..+|.|+||+|+|++|.+..+++.|...+.. ...|+||+|+||+..... .++.|..
T Consensus 221 ~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~------ 292 (326)
T PF00295_consen 221 RIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDC------ 292 (326)
T ss_dssp EEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-------
T ss_pred EEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEE------
Confidence 999852 3568999999999999999999999865421 247999999999998775 6777752
Q ss_pred CCCCCCCceeEeeEEEEEEEEee
Q 046362 235 LCNNQTGAVAISGVEFNQIIGTY 257 (334)
Q Consensus 235 ~~~~~~~~~~i~nIt~~nI~~t~ 257 (334)
.+..+++||+|+||..+.
T Consensus 293 -----~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 293 -----SPGSPCSNITFENVNITG 310 (326)
T ss_dssp -----BTTSSEEEEEEEEEEEES
T ss_pred -----CCcCcEEeEEEEeEEEEc
Confidence 134679999999999986
No 13
>PLN02155 polygalacturonase
Probab=99.88 E-value=2.2e-20 Score=181.67 Aligned_cols=197 Identities=16% Similarity=0.217 Sum_probs=160.2
Q ss_pred cccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCCC----CceEE
Q 046362 20 FQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPL----CHLKF 95 (334)
Q Consensus 20 ~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~----~~i~~ 95 (334)
+.+|.+.+++|+.|.|--+.+. +.| .+++.+|+||+|++|+|.++.. .++++
T Consensus 145 p~~i~~~~~~nv~i~gitl~nS---p~w---------------------~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi 200 (394)
T PLN02155 145 VRSISFNSAKDVIISGVKSMNS---QVS---------------------HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHV 200 (394)
T ss_pred ccceeEEEeeeEEEECeEEEcC---CCe---------------------EEEEECeeeEEEEEEEEECCCCCCCCCcccc
Confidence 3579999999999999766543 334 5899999999999999998532 68999
Q ss_pred ecccCEEEEeEEEECCCCCCCCCceeEeC-eecEEEEeeEEecCCCeeeecCC--------ceeEEEEeEEEcC-CceEE
Q 046362 96 DSSGGIKVKNIHISSPENSPNTDGIHLQN-TKDVEIQHSDIACGDDCVSIQTG--------CSNVHIHHISCGP-GHGIS 165 (334)
Q Consensus 96 ~~~~nV~i~~~~I~~~~~~~ntDGidi~~-s~nV~I~n~~i~~gDD~i~iksg--------~~nI~I~nc~~~~-~~gi~ 165 (334)
..|+||+|+|++|.+.| |+|.+.+ |+||+|+||.+..|+ +|+|+|. .+||+|+||++.+ .+|+.
T Consensus 201 ~~s~nV~I~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~Gir 274 (394)
T PLN02155 201 QFSTGVTFTGSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVR 274 (394)
T ss_pred ccceeEEEEeeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEE
Confidence 99999999999999964 5788874 899999999999875 7999882 4999999999986 57999
Q ss_pred EeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC----------cceEEeEEEEeEEEeCC-ceeEEEEeeecCCC
Q 046362 166 LGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG----------IGSVKNVSFSSIQVWDV-KVPIIIDQYYCDKH 234 (334)
Q Consensus 166 IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~----------~G~i~nI~f~ni~~~~~-~~~i~I~~~y~~~~ 234 (334)
|+|... ..+|.|+||+|+|++|.+..++|.|.+.+.. ...|+||+|+||+.... ..++.+.-
T Consensus 275 IKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c------ 347 (394)
T PLN02155 275 IKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVC------ 347 (394)
T ss_pred EEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEe------
Confidence 998411 2468999999999999999999999875521 13699999999999876 44666642
Q ss_pred CCCCCCCceeEeeEEEEEEEEeec
Q 046362 235 LCNNQTGAVAISGVEFNQIIGTYS 258 (334)
Q Consensus 235 ~~~~~~~~~~i~nIt~~nI~~t~~ 258 (334)
.+..+++||+|+||..+..
T Consensus 348 -----~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 348 -----SKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred -----CCCCCEEEEEEEeeEEEec
Confidence 2356799999999998754
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.87 E-value=4.4e-20 Score=181.29 Aligned_cols=212 Identities=17% Similarity=0.228 Sum_probs=167.4
Q ss_pred EEEEcCCCCCCCCCC-CCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEE
Q 046362 3 GTLLAPPKVGSWPKS-SLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVR 81 (334)
Q Consensus 3 g~L~~s~~~~~y~~~-~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~ 81 (334)
|+|.+.-. ..|... .++.+|.|.+++|+.|.|--+++. ++| .+++..|+||+|+
T Consensus 121 GtIDGqG~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS---p~w---------------------~i~i~~c~nV~i~ 175 (456)
T PLN03003 121 GEINGQGS-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDS---PMA---------------------HIHISECNYVTIS 175 (456)
T ss_pred ceEeCCch-hhhhcccCCceEEEEEecCCcEEeCeEEecC---CcE---------------------EEEEeccccEEEE
Confidence 56665442 334332 345689999999999999766653 334 4889999999999
Q ss_pred eEEEEcCC----CCceEEecccCEEEEeEEEECCCCCCCCCceeEeC-eecEEEEeeEEecCCCeeeecCC--------c
Q 046362 82 DIKINNSP----LCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQN-TKDVEIQHSDIACGDDCVSIQTG--------C 148 (334)
Q Consensus 82 gi~i~n~~----~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~-s~nV~I~n~~i~~gDD~i~iksg--------~ 148 (334)
+|+|.++. ..++++..|+||+|+|+.|.+.| |+|.+.+ |+||+|+||.+..++ +|+|+|. .
T Consensus 176 ~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGD-----DCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V 249 (456)
T PLN03003 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATGD-----DCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATV 249 (456)
T ss_pred EEEEeCCCCCCCCCcEeecCcceEEEEecEEecCC-----CeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceE
Confidence 99999743 26899999999999999999964 6788874 889999999998875 7999872 6
Q ss_pred eeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC------------cceEEeEEEEeE
Q 046362 149 SNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG------------IGSVKNVSFSSI 215 (334)
Q Consensus 149 ~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~------------~G~i~nI~f~ni 215 (334)
+||+|+||++.+ .+|++|+|.. +..|.++||+|+|++|.+..++|.|...+.. ...|+||+|+||
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~--Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQ--GGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeC--CCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 999999999986 5799999862 2357899999999999999999999876631 137999999999
Q ss_pred EEeCC-ceeEEEEeeecCCCCCCCCCCceeEeeEEEEEEEEeec
Q 046362 216 QVWDV-KVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYS 258 (334)
Q Consensus 216 ~~~~~-~~~i~I~~~y~~~~~~~~~~~~~~i~nIt~~nI~~t~~ 258 (334)
+.+.. +.++.+. | .+..+.+||+|+||..+..
T Consensus 328 ~GTs~~~~ai~l~---C--------s~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 328 IGTSKSEYGVDFR---C--------SERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEEeCccceEEEE---e--------CCCCCeeeEEEEEEEEEec
Confidence 98654 4566553 2 2456789999999998754
No 15
>PLN03010 polygalacturonase
Probab=99.82 E-value=1.4e-17 Score=162.48 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=179.5
Q ss_pred EEEEcCCCCCCCCCCCCcccEEEEc---eEeeEEEeccEEEcCCcc-ccCCCCCccccccCCCCCCCCCeEEEEEeEecE
Q 046362 3 GTLLAPPKVGSWPKSSLFQWINFKW---LHNFTIQGNGIVDGQGFE-WWGGSQSNSIQKKSKHIPEMKPTALRFYASYNV 78 (334)
Q Consensus 3 g~L~~s~~~~~y~~~~~~~~i~~~~---~~Nv~I~G~G~idG~G~~-~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv 78 (334)
|+|+.|+...++- .-|.+.+ ..|+.|.=.|+|-+.-.. .|... .....+.|.+.+|+
T Consensus 81 g~v~vP~G~~yl~-----~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w~~~--------------~~~~wi~f~~v~nv 141 (409)
T PLN03010 81 NTLLIPSGKTYLL-----QPIEFKGPCKSTSIKVQLDGIIVAPSNIVAWSNP--------------KSQMWISFSTVSGL 141 (409)
T ss_pred eEEEECCCCeEEE-----EeEEecCCCCCCcEEEEEccEEEccCChhhccCC--------------CCcceEEEeccccc
Confidence 4666665533221 1344544 246666655777654321 23210 12346889999999
Q ss_pred EEEeEEEEcC---CCC-ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecC-----CCeeeecCCce
Q 046362 79 TVRDIKINNS---PLC-HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACG-----DDCVSIQTGCS 149 (334)
Q Consensus 79 ~i~gi~i~n~---~~~-~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g-----DD~i~iksg~~ 149 (334)
.|.|=-.+|. ..| .+.+..|+|++|+++++.+++.+ -+.+..|+||+|+|..|.+. -|+|.+.+ ++
T Consensus 142 ~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~ 216 (409)
T PLN03010 142 MIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNTDGIDISY-ST 216 (409)
T ss_pred EEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cc
Confidence 9998666654 235 58999999999999999998765 48888999999999999863 37888876 79
Q ss_pred eEEEEeEEEcCC-ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecC--CcceEEeEEEEeEEEeCCceeEEE
Q 046362 150 NVHIHHISCGPG-HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQG--GIGSVKNVSFSSIQVWDVKVPIII 226 (334)
Q Consensus 150 nI~I~nc~~~~~-~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g--~~G~i~nI~f~ni~~~~~~~~i~I 226 (334)
||+|+||++..+ ++|+|++. -.|+.|+++.+.. .+|+.|.+.-. ....|+||+|+|+++.+..+++.|
T Consensus 217 nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirI 287 (409)
T PLN03010 217 NINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARI 287 (409)
T ss_pred eEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEE
Confidence 999999999865 58999973 2356777776654 47999998632 224699999999999999999999
Q ss_pred EeeecCCCCCCCCCCceeEeeEEEEEEEEeeccccEEEE---cCC---------CCCeecEEEEeEEEEcCCCcccccce
Q 046362 227 DQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLA---CSN---------SVPCSDVDLIDIQLKPSSKYQSFQQA 294 (334)
Q Consensus 227 ~~~y~~~~~~~~~~~~~~i~nIt~~nI~~t~~~~~~~i~---~~~---------~~~~~nI~f~nv~i~~~~g~~~~~~~ 294 (334)
+... ...+.++||+|+||+......|+.|. +.. ...++||+|+||+-+..... +..+
T Consensus 288 Kt~~---------G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~--~i~l 356 (409)
T PLN03010 288 KTWQ---------GGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNEN--AITL 356 (409)
T ss_pred EEec---------CCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCc--cEEE
Confidence 8752 23578999999999998766677652 211 12578999999988765432 3455
Q ss_pred eee
Q 046362 295 LCW 297 (334)
Q Consensus 295 ~c~ 297 (334)
.|+
T Consensus 357 ~Cs 359 (409)
T PLN03010 357 KCS 359 (409)
T ss_pred EeC
Confidence 554
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.75 E-value=1.7e-16 Score=155.30 Aligned_cols=248 Identities=16% Similarity=0.206 Sum_probs=131.8
Q ss_pred ccEEEEceEeeEEEeccEEEcCCccccCCCCCcccccc-CCCCCCCCCeEEEE---EeEecEEEEeEEEEcCCCCceEEe
Q 046362 21 QWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKK-SKHIPEMKPTALRF---YASYNVTVRDIKINNSPLCHLKFD 96 (334)
Q Consensus 21 ~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~-~~~~~~~rP~~i~~---~~~~nv~i~gi~i~n~~~~~i~~~ 96 (334)
+|.+....+|++|+|+|+++|.-..|-........... ....+...=+|+.+ ..++++.++|++|.+||+|++.+.
T Consensus 270 Af~~~~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~ 349 (582)
T PF03718_consen 270 AFEYTDTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLY 349 (582)
T ss_dssp -EEE---SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEE
T ss_pred EEEEccCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEec
Confidence 45555578999999999999854443211110000000 00011112235543 445689999999999999999999
Q ss_pred ccc----CEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCc-e--EEEecc
Q 046362 97 SSG----GIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGH-G--ISLGGL 169 (334)
Q Consensus 97 ~~~----nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~-g--i~IGS~ 169 (334)
+-+ +..|+|.++.... ..|+|||.+. ++-+|+|||+++.||+|-+.. .|+.|+||++|..+ | |.+|..
T Consensus 350 g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~ 424 (582)
T PF03718_consen 350 GNENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT 424 (582)
T ss_dssp SSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS
T ss_pred CCccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc
Confidence 655 4899999999764 4599999997 466889999999999997665 69999999999643 3 777763
Q ss_pred CccCCCCcEEEEEEEeEEEecCC---------ceEEEeee-c---C------CcceEEeEEEEeEEEeCCc-eeEEEEee
Q 046362 170 GKDKSVACVSDIVVEKISLQNTL---------AGVRIKTW-Q---G------GIGSVKNVSFSSIQVWDVK-VPIIIDQY 229 (334)
Q Consensus 170 g~~~~~~~i~nI~~~ni~i~~~~---------~gi~Ik~~-~---g------~~G~i~nI~f~ni~~~~~~-~~i~I~~~ 229 (334)
...++||.|+|+.++.++ .+|.--+. + + ..-.|++++|+|+++|+.- ..+.|...
T Consensus 425 -----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl 499 (582)
T PF03718_consen 425 -----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL 499 (582)
T ss_dssp --------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S
T ss_pred -----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec
Confidence 456999999999999863 23332221 1 1 1126899999999999864 34445321
Q ss_pred ecCCCCCCCCCCceeEeeEEEEEEEEeeccc-cEEEEcC------CCCCeecEEEEeEEEEcCC
Q 046362 230 YCDKHLCNNQTGAVAISGVEFNQIIGTYSVQ-PIHLACS------NSVPCSDVDLIDIQLKPSS 286 (334)
Q Consensus 230 y~~~~~~~~~~~~~~i~nIt~~nI~~t~~~~-~~~i~~~------~~~~~~nI~f~nv~i~~~~ 286 (334)
.......|+|+.|+...+..-.. ...+... ......+|.|+|.+|.++.
T Consensus 500 --------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 500 --------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp --------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred --------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 00112345555555332221000 1111111 1234789999999986543
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=5.1e-12 Score=126.45 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=150.1
Q ss_pred EEEceEeeEEEeccEEEcCCc--cccCCCCCcccc-cc-CCCCCCCCCeEEEEEeEecEEEEeEEEEcCCCCceEEeccc
Q 046362 24 NFKWLHNFTIQGNGIVDGQGF--EWWGGSQSNSIQ-KK-SKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSG 99 (334)
Q Consensus 24 ~~~~~~Nv~I~G~G~idG~G~--~~w~~~~~~~~~-~~-~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~ 99 (334)
++....+..|.++|.+|+.+. .||......... ++ .......|+.. .|..- ......+.-.-.....+.+..|+
T Consensus 170 ~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~-g~~~~~i~~~~~rp~~~~l~~c~ 247 (542)
T COG5434 170 YATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGL-GAVETRIGGKGVRPRTVVLKGCR 247 (542)
T ss_pred eeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhh-hhhcc-cchhhcccccCcCCceEEEeccc
Confidence 566778899999998887443 356544321110 00 00001122221 01000 01111111111245678999999
Q ss_pred CEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCC----eeeecCCceeEEEEeEEEcCC-ceEEEeccCccC-
Q 046362 100 GIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDD----CVSIQTGCSNVHIHHISCGPG-HGISLGGLGKDK- 173 (334)
Q Consensus 100 nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD----~i~iksg~~nI~I~nc~~~~~-~gi~IGS~g~~~- 173 (334)
||++.+++|.+++.| ++++..|+|++++|..|.+.++ ++.+.+ |+|++|++|+|..+ +.|+|+|.....
T Consensus 248 NV~~~g~~i~ns~~~----~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~iksg~~~~~ 322 (542)
T COG5434 248 NVLLEGLNIKNSPLW----TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAIKSGAGLDG 322 (542)
T ss_pred eEEEeeeEecCCCcE----EEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEeecccCCcc
Confidence 999999999998765 7999999999999999998765 888887 89999999999864 579998742111
Q ss_pred --CCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCCCCCCCCCCceeEeeEEEE
Q 046362 174 --SVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFN 251 (334)
Q Consensus 174 --~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~~~~~~~~~~~~i~nIt~~ 251 (334)
-.+.-+||+|+||.|.....++.+.++.+ |.|+||++||+.|.+...++.|..... .++.++||+|+
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~--ggv~ni~ved~~~~~~d~GLRikt~~~---------~gG~v~nI~~~ 391 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG--GGVQNITVEDCVMDNTDRGLRIKTNDG---------RGGGVRNIVFE 391 (542)
T ss_pred cccccccccEEEecceecccccceEeeeecC--CceeEEEEEeeeeccCcceeeeeeecc---------cceeEEEEEEe
Confidence 12455999999999998877888888864 589999999999999889999986532 34789999999
Q ss_pred EEEEe
Q 046362 252 QIIGT 256 (334)
Q Consensus 252 nI~~t 256 (334)
++...
T Consensus 392 ~~~~~ 396 (542)
T COG5434 392 DNKMR 396 (542)
T ss_pred ccccc
Confidence 88754
No 18
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.16 E-value=1.6e-09 Score=105.63 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=81.5
Q ss_pred EEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeE
Q 046362 4 TLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDI 83 (334)
Q Consensus 4 ~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi 83 (334)
+|.+.+....|...+...++...+++||+|+|. +|+|.|..|- .||.+|++..|++++|++.
T Consensus 90 tL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGL-tIdGsG~dl~-----------------~rdAgI~v~~a~~v~Iedn 151 (455)
T TIGR03808 90 QLIGVRGATRLVFTGGPSLLSSEGADGIGLSGL-TLDGGGIPLP-----------------QRRGLIHCQGGRDVRITDC 151 (455)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCCeEEEee-EEEeCCCccc-----------------CCCCEEEEccCCceEEEee
Confidence 344444443232223366787889999999999 9999996542 3778999999999999999
Q ss_pred EEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEec-CCCeeee
Q 046362 84 KINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIAC-GDDCVSI 144 (334)
Q Consensus 84 ~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~i 144 (334)
+|.++..|++.+..|+ ..|.+-+|.... ..+|.+..+++++|++-+|.. .|++|.+
T Consensus 152 ~L~gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 152 EITGSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEI 208 (455)
T ss_pred EEEcCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEE
Confidence 9999999999999999 444444444321 224666666666666666654 3444443
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.16 E-value=1.9e-09 Score=102.72 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=121.5
Q ss_pred eEeeEEEecc----EEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCCCCceEEecccCEEE
Q 046362 28 LHNFTIQGNG----IVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKV 103 (334)
Q Consensus 28 ~~Nv~I~G~G----~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i 103 (334)
.++|+|.|.| +||+.++.. ....+ +..+++|+|+++++.++..+++.+..|++++|
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~~-------------------~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I 90 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQVG-------------------GAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIII 90 (314)
T ss_pred CCCeEEEecCCCccEEecccCCC-------------------CCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEE
Confidence 4789999876 488776521 01123 44689999999999999999999999999999
Q ss_pred EeEEEECCCC---CCCCCceeEeCeecEEEEeeEEecC-CCeeeecCCceeEEEEeEEEcCC-ceEEEeccCccCCCCcE
Q 046362 104 KNIHISSPEN---SPNTDGIHLQNTKDVEIQHSDIACG-DDCVSIQTGCSNVHIHHISCGPG-HGISLGGLGKDKSVACV 178 (334)
Q Consensus 104 ~~~~I~~~~~---~~ntDGidi~~s~nV~I~n~~i~~g-DD~i~iksg~~nI~I~nc~~~~~-~gi~IGS~g~~~~~~~i 178 (334)
+++++..... ....+||.+..|++++|++|+++.. |++|.++. ++|++|+|++++.. .||.+-. -
T Consensus 91 ~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S 160 (314)
T TIGR03805 91 RRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------S 160 (314)
T ss_pred EeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------c
Confidence 9999974321 1246799999999999999999985 45898875 79999999999864 4888853 2
Q ss_pred EEEEEEeEEEecCCceEEEeeecCCc-ceEEeEEEEeEEEeC
Q 046362 179 SDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNVSFSSIQVWD 219 (334)
Q Consensus 179 ~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI~f~ni~~~~ 219 (334)
.++.++|..+.+...|+.+-..++.. ..-+++++++-++.+
T Consensus 161 ~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 161 QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC
Confidence 46778888888877888886554321 123566666666554
No 20
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.88 E-value=2.8e-08 Score=90.23 Aligned_cols=130 Identities=22% Similarity=0.330 Sum_probs=91.0
Q ss_pred CCCeEEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCC-----CCce------eEeCeecEEEEee
Q 046362 65 MKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPN-----TDGI------HLQNTKDVEIQHS 133 (334)
Q Consensus 65 ~rP~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~n-----tDGi------di~~s~nV~I~n~ 133 (334)
..|++ |..|++++++++++-|++. .+..|++|+++|+.+....-..+ -|++ .++.++||.|+|+
T Consensus 89 ~apK~--fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns 163 (277)
T PF12541_consen 89 QAPKM--FRECSNITLENVDIPDADE---TLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNS 163 (277)
T ss_pred cCchH--hhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEcc
Confidence 45665 7889999999999988876 34567778888877743221111 1222 3467899999999
Q ss_pred EEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEE
Q 046362 134 DIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFS 213 (334)
Q Consensus 134 ~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ 213 (334)
.+.+.| +. -.++||+|.|+++. |=-+|- .-+||++.||++.+. . +--+++|++++
T Consensus 164 ~l~sKD-AF---Wn~eNVtVyDS~i~---GEYLgW--------~SkNltliNC~I~g~-Q---------pLCY~~~L~l~ 218 (277)
T PF12541_consen 164 KLDSKD-AF---WNCENVTVYDSVIN---GEYLGW--------NSKNLTLINCTIEGT-Q---------PLCYCDNLVLE 218 (277)
T ss_pred EEeccc-cc---ccCCceEEEcceEe---eeEEEE--------EcCCeEEEEeEEecc-C---------ccEeecceEEe
Confidence 998875 33 35899999999886 322222 246999999999766 1 34589999999
Q ss_pred eEEEeCCceeE
Q 046362 214 SIQVWDVKVPI 224 (334)
Q Consensus 214 ni~~~~~~~~i 224 (334)
|++|.+...++
T Consensus 219 nC~~~~tdlaF 229 (277)
T PF12541_consen 219 NCTMIDTDLAF 229 (277)
T ss_pred CcEeecceeee
Confidence 99999775443
No 21
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.58 E-value=3.5e-07 Score=83.19 Aligned_cols=103 Identities=12% Similarity=0.238 Sum_probs=80.2
Q ss_pred EEEeEecEEEEeEEEEcCCCCc----------------eEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeE
Q 046362 71 RFYASYNVTVRDIKINNSPLCH----------------LKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSD 134 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~~----------------i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~ 134 (334)
.|+.|++++++++++ ++.++. -.+++|+||.|+|.++.+.+ .+..|+||+|.|++
T Consensus 113 t~W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~ 183 (277)
T PF12541_consen 113 TLWNCRGIKLKNVQA-NGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSV 183 (277)
T ss_pred cCEEeCCeEEEeEEE-eceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc--------ccccCCceEEEcce
Confidence 467888888888888 444431 35678999999999999875 34579999999999
Q ss_pred EecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEE
Q 046362 135 IACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRI 197 (334)
Q Consensus 135 i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~I 197 (334)
|..- -|+-.++|+++-||++.+..|+. +++|++.+||+|.+++.++.-
T Consensus 184 i~GE----YLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 184 INGE----YLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred Eeee----EEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 9653 34445799999999998777765 488999999999988766544
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.56 E-value=1.5e-05 Score=76.12 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=114.3
Q ss_pred EEEEEeEecEEEEeEEEEc-------CCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCe
Q 046362 69 ALRFYASYNVTVRDIKINN-------SPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDC 141 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~n-------~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~ 141 (334)
.|.+..|++++|+++++.. ...+++.+..|++++|+++++.... .+||-+..|++++|+++.+.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcce
Confidence 5777899999999999961 2468899999999999999998743 3499999999999999999998889
Q ss_pred eeecCCceeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecCCc------eEEEeeecCCcceE----EeE
Q 046362 142 VSIQTGCSNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNTLA------GVRIKTWQGGIGSV----KNV 210 (334)
Q Consensus 142 i~iksg~~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~------gi~Ik~~~g~~G~i----~nI 210 (334)
|.+-. +.++.|++.++.. ..|+.+-+.... ....-++++|++..+.+... |-.+...+.+.|.+ +++
T Consensus 155 I~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v 232 (314)
T TIGR03805 155 IEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDV 232 (314)
T ss_pred EEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccce
Confidence 98874 6899999999875 558888543211 11235789999999886521 11222223334544 889
Q ss_pred EEEeEEEeCCce-eEEEEe
Q 046362 211 SFSSIQVWDVKV-PIIIDQ 228 (334)
Q Consensus 211 ~f~ni~~~~~~~-~i~I~~ 228 (334)
+|+|-++++... ++.+..
T Consensus 233 ~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 233 EIFGNVISNNDTANVLISS 251 (314)
T ss_pred EEECCEEeCCcceeEEEEe
Confidence 999999988754 555543
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.49 E-value=1.6e-06 Score=72.80 Aligned_cols=138 Identities=21% Similarity=0.303 Sum_probs=94.5
Q ss_pred EEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCce
Q 046362 70 LRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCS 149 (334)
Q Consensus 70 i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~ 149 (334)
|.+....+++|++.+|.+...+++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+. ++.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 56677788999999999999999999999999999999988 355899998899999999999877566666 478
Q ss_pred eEEEEeEEEcCC--ceEEEeccCccCCCCcEEEEEEEeEEEecCC-ceEEEeeecCCcceEEeEEEEeEEEeCCc-eeEE
Q 046362 150 NVHIHHISCGPG--HGISLGGLGKDKSVACVSDIVVEKISLQNTL-AGVRIKTWQGGIGSVKNVSFSSIQVWDVK-VPII 225 (334)
Q Consensus 150 nI~I~nc~~~~~--~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~-~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~-~~i~ 225 (334)
+++|++|.+... .||.+.. .-++++|++++|.+.. .|+.+.... -.++++++.++.+.. .++.
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEE
Confidence 999999999753 3777752 1456888999998876 677776643 246677777777653 4554
Q ss_pred E
Q 046362 226 I 226 (334)
Q Consensus 226 I 226 (334)
+
T Consensus 144 ~ 144 (158)
T PF13229_consen 144 L 144 (158)
T ss_dssp -
T ss_pred E
Confidence 4
No 24
>smart00656 Amb_all Amb_all domain.
Probab=98.43 E-value=1e-05 Score=71.69 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=72.8
Q ss_pred eEEecccCEEEEeEEEECCCC--CCCCCceeEeCeecEEEEeeEEecC----------CCeeeecCCceeEEEEeEEEcC
Q 046362 93 LKFDSSGGIKVKNIHISSPEN--SPNTDGIHLQNTKDVEIQHSDIACG----------DDCVSIQTGCSNVHIHHISCGP 160 (334)
Q Consensus 93 i~~~~~~nV~i~~~~I~~~~~--~~ntDGidi~~s~nV~I~n~~i~~g----------DD~i~iksg~~nI~I~nc~~~~ 160 (334)
|.+..++||.|+|++|..... ..+.|+|.+.++++|.|++|.+..+ |..+.++.++.+|+|++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 444446677777777776532 1367999999999999999999986 5666788889999999999975
Q ss_pred -CceEEEeccCccCCCCcEEEEEEEeEEEecC
Q 046362 161 -GHGISLGGLGKDKSVACVSDIVVEKISLQNT 191 (334)
Q Consensus 161 -~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~ 191 (334)
..+.-||+.-.+ ......+|++.++.+.++
T Consensus 114 h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 114 HWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred CCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 447888874221 122356899999988764
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.42 E-value=1.8e-05 Score=77.62 Aligned_cols=146 Identities=13% Similarity=0.198 Sum_probs=100.3
Q ss_pred EEEEEeEecEEEEeEEEEcCCC------CceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEE-ecCCCe
Q 046362 69 ALRFYASYNVTVRDIKINNSPL------CHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDI-ACGDDC 141 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~n~~~------~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i-~~gDD~ 141 (334)
++.-...++|+|+|++|.++.. ..|++..|++++|++++|.... .-||.+..|+ ..|.+..| ...+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 5666778899999999998763 4688899999999999998853 1389999998 55555555 455666
Q ss_pred eeecCCceeEEEEeEEEcC--CceEEEecc--Ccc--------------------CCCC-----cEEEEEEEeEEEecCC
Q 046362 142 VSIQTGCSNVHIHHISCGP--GHGISLGGL--GKD--------------------KSVA-----CVSDIVVEKISLQNTL 192 (334)
Q Consensus 142 i~iksg~~nI~I~nc~~~~--~~gi~IGS~--g~~--------------------~~~~-----~i~nI~~~ni~i~~~~ 192 (334)
|.+-. +++++|++.++.. ..||.|-.. +.+ ..+. ...+++|++.++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 66543 7899999999875 345655422 110 0111 2345677777777776
Q ss_pred -ceEEEeeecCCcceEEeEEEEeEEEeCCce-eEEEE
Q 046362 193 -AGVRIKTWQGGIGSVKNVSFSSIQVWDVKV-PIIID 227 (334)
Q Consensus 193 -~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~-~i~I~ 227 (334)
.|+++.+. +|+.|++-+++++++ +++..
T Consensus 262 ~dgI~~nss-------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNSA-------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEcc-------cCcEEECcEeeeeeeeEEEEE
Confidence 67777653 566777777777776 66543
No 26
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.26 E-value=2.2e-05 Score=78.08 Aligned_cols=172 Identities=14% Similarity=0.176 Sum_probs=98.9
Q ss_pred ceEEecccCEEEEeEEEECCCCCCCCCceeEeCee----cEEEEeeEEec----CCCeeeecCCceeEEEEeEEEcC-Cc
Q 046362 92 HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTK----DVEIQHSDIAC----GDDCVSIQTGCSNVHIHHISCGP-GH 162 (334)
Q Consensus 92 ~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~----nV~I~n~~i~~----gDD~i~iksg~~nI~I~nc~~~~-~~ 162 (334)
++....+++..+.+++|..++.. .+++.+.+ +..|+|...-. +-|++.+.. |=+|+||.++. .+
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP~~----Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPPFH----SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDD 394 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-
T ss_pred hhccCCcceEEEEeeEecCCCcc----eEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCc
Confidence 34566788999999999998643 46666433 46777776653 457898876 56789999974 66
Q ss_pred eEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCC---------ceeEEEE-eeecC
Q 046362 163 GISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDV---------KVPIIID-QYYCD 232 (334)
Q Consensus 163 gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~---------~~~i~I~-~~y~~ 232 (334)
+|++- -+++.++||++....+|--|..-. ....++||+|+|+.+... ..+|+-. ..|.+
T Consensus 395 ~iKlY----------hS~v~v~~~ViWk~~Ngpiiq~GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~ 463 (582)
T PF03718_consen 395 AIKLY----------HSNVSVSNTVIWKNENGPIIQWGW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDD 463 (582)
T ss_dssp SEE------------STTEEEEEEEEEE-SSS-SEE--C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS
T ss_pred hhhee----------ecCcceeeeEEEecCCCCeEEeec-cccccCceEEeeeEEEeeeeecccCCCCceeEeccccccc
Confidence 88763 258899999999988876564322 134799999999999754 1234332 23522
Q ss_pred CCCCCCCCCceeEeeEEEEEEEEeeccc-cEEEEcCCCCCeecEEEEeEEEE
Q 046362 233 KHLCNNQTGAVAISGVEFNQIIGTYSVQ-PIHLACSNSVPCSDVDLIDIQLK 283 (334)
Q Consensus 233 ~~~~~~~~~~~~i~nIt~~nI~~t~~~~-~~~i~~~~~~~~~nI~f~nv~i~ 283 (334)
........+..+|++++|+|+++.+... .+.|.. -..-+|+.++||.+.
T Consensus 464 ~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p--lqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 464 MASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP--LQNYDNLVIKNVHFE 513 (582)
T ss_dssp -SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred ccCCCCCCcccceeeEEEEeEEEecccceeEEEee--cCCCcceEEEEeecc
Confidence 2111223456789999999999876432 344543 234667888888887
No 27
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=3.1e-05 Score=71.88 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=96.5
Q ss_pred EEEEEeEecEEEEeEEEE-cCCCCceEEecccCEEEEeEEEECCCCC-CCCCceeE-eCeecEEEEeeEEec--------
Q 046362 69 ALRFYASYNVTVRDIKIN-NSPLCHLKFDSSGGIKVKNIHISSPENS-PNTDGIHL-QNTKDVEIQHSDIAC-------- 137 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~-n~~~~~i~~~~~~nV~i~~~~I~~~~~~-~ntDGidi-~~s~nV~I~n~~i~~-------- 137 (334)
.+.+..|.|.+|.|+.-. ---.|.|.+...+||.|+|++|.-...+ |+-|+|.+ ..++||.|++|++..
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 378888999999988632 1235889999999999999999875422 35699999 679999999999987
Q ss_pred -CCCeeeecCCceeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecC
Q 046362 138 -GDDCVSIQTGCSNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNT 191 (334)
Q Consensus 138 -gDD~i~iksg~~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~ 191 (334)
+|..+.||-++..|+|++|.|.. ..++-+|+.......+.-.+|++.++.+.+.
T Consensus 174 h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 174 HGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 45667788889999999999974 5588888753322235567899999999875
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.19 E-value=2e-05 Score=65.96 Aligned_cols=117 Identities=22% Similarity=0.375 Sum_probs=82.9
Q ss_pred ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCc-eEEEeccC
Q 046362 92 HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGH-GISLGGLG 170 (334)
Q Consensus 92 ~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~-gi~IGS~g 170 (334)
++.+..+.+++|++++|... ..+||.+..+..++|+||.|..+..+|.+.. ..++++++|++.... |+.+-
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~--- 73 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVS--- 73 (158)
T ss_dssp CEEETTCEC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECC---
T ss_pred EEEEECCcCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEE---
Confidence 57788889999999999984 4679999998889999999999888888886 489999999998654 55543
Q ss_pred ccCCCCcEEEEEEEeEEEecCCc-eEEEeeecCCcceEEeEEEEeEEEeCCc-eeEEEEe
Q 046362 171 KDKSVACVSDIVVEKISLQNTLA-GVRIKTWQGGIGSVKNVSFSSIQVWDVK-VPIIIDQ 228 (334)
Q Consensus 171 ~~~~~~~i~nI~~~ni~i~~~~~-gi~Ik~~~g~~G~i~nI~f~ni~~~~~~-~~i~I~~ 228 (334)
.-.++++++|++.+... |+.+.. .-.++++++.++.+.. .++++..
T Consensus 74 ------~~~~~~i~~~~i~~~~~~gi~~~~------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 74 ------GSSNITIENNRIENNGDYGIYISN------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp ------S-CS-EEES-EEECSSS-SCE-TC------EECS-EEES-EEECCTTSSCEEEE
T ss_pred ------ecCCceecCcEEEcCCCccEEEec------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 24578888888888765 888864 2456888999998876 5677653
No 29
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.14 E-value=3e-05 Score=69.27 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=77.6
Q ss_pred ecEEEEeE----EEEcCCCCceEEe-cccCEEEEeEEEECC-----------CCCCCCCceeEeCeecEEEEeeEEecC-
Q 046362 76 YNVTVRDI----KINNSPLCHLKFD-SSGGIKVKNIHISSP-----------ENSPNTDGIHLQNTKDVEIQHSDIACG- 138 (334)
Q Consensus 76 ~nv~i~gi----~i~n~~~~~i~~~-~~~nV~i~~~~I~~~-----------~~~~ntDGidi~~s~nV~I~n~~i~~g- 138 (334)
.|-+|.|. .|.+ +++.+. .++||.|+|++|... ......|+|.+..++||.|++|.+..+
T Consensus 21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~ 97 (200)
T PF00544_consen 21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN 97 (200)
T ss_dssp SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT
T ss_pred CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc
Confidence 56777773 3332 456666 889999999999871 123578999999999999999999876
Q ss_pred --------CCeeeecCCceeEEEEeEEEcCC-ceEEEeccCccCCCCcEEEEEEEeEEEecC
Q 046362 139 --------DDCVSIQTGCSNVHIHHISCGPG-HGISLGGLGKDKSVACVSDIVVEKISLQNT 191 (334)
Q Consensus 139 --------DD~i~iksg~~nI~I~nc~~~~~-~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~ 191 (334)
|..+.++.++.+|+|++|.|... .+..+|+......... .+|+|..+.+.++
T Consensus 98 ~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 98 FECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp S-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred cccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 55678888899999999999753 3566786422212234 8999999998764
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.10 E-value=0.00015 Score=66.04 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=79.3
Q ss_pred EEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCc
Q 046362 69 ALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGC 148 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~ 148 (334)
.+.+..+.+++|++.++.+. ..++++..|++++|++..+... ..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 35677777888888887776 6778888888888888887763 367888777766888888877666777765 4
Q ss_pred eeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecC-CceEE
Q 046362 149 SNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNT-LAGVR 196 (334)
Q Consensus 149 ~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~-~~gi~ 196 (334)
.+.+|+++++.. ..||.+.. -.+.++++.++.+. ..||.
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccceE
Confidence 567777777753 45777753 14566667777766 67777
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.05 E-value=0.00016 Score=65.77 Aligned_cols=134 Identities=21% Similarity=0.257 Sum_probs=106.6
Q ss_pred EEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCc
Q 046362 69 ALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGC 148 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~ 148 (334)
-+++..+++..|++.++.+. ..++.+..+.+++|++.+|... ..||.+..+++++|+++.+.....+|.+...
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s- 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMGS- 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEcC-
Confidence 47888889999999999764 4567889999999999999874 5699999999999999999998899999874
Q ss_pred eeEEEEeEEEcC-CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCC-ceeEE
Q 046362 149 SNVHIHHISCGP-GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDV-KVPII 225 (334)
Q Consensus 149 ~nI~I~nc~~~~-~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~-~~~i~ 225 (334)
.+.+|+++++.. ..||.+.. ..+.++++.++.+...||.+... .+.++++-++.+. ..+|.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 455999999975 45887753 23477888888888889998753 4555666666665 66776
No 32
>smart00656 Amb_all Amb_all domain.
Probab=97.87 E-value=0.001 Score=59.01 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=88.9
Q ss_pred EEEEeEecEEEEeEEEEcCCC------CceEEecccCEEEEeEEEECCCC----CCCCCc-eeEe-CeecEEEEeeEEec
Q 046362 70 LRFYASYNVTVRDIKINNSPL------CHLKFDSSGGIKVKNIHISSPEN----SPNTDG-IHLQ-NTKDVEIQHSDIAC 137 (334)
Q Consensus 70 i~~~~~~nv~i~gi~i~n~~~------~~i~~~~~~nV~i~~~~I~~~~~----~~ntDG-idi~-~s~nV~I~n~~i~~ 137 (334)
|.+..++||.|++|++++... .++.+..+++|.|++|++..... ..-.|| +++. .+.+|+|.+|.+..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 567778999999999998644 57999999999999999987511 112455 4554 48999999999987
Q ss_pred CCCeeeecCCce-------eEEEEeEEEcCC--ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEE
Q 046362 138 GDDCVSIQTGCS-------NVHIHHISCGPG--HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVK 208 (334)
Q Consensus 138 gDD~i~iksg~~-------nI~I~nc~~~~~--~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~ 208 (334)
.+-+..++++.+ +|++.++.+... ..=++. .+ .+.+-|..+.+.. +..+....+..-.+|
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~-~~~~~~~~~~~v~~E 182 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWT-SYAIGGRMGATILSE 182 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcc-cEeEecCCCcEEEEE
Confidence 666666666422 699999988643 222221 12 5677777777653 223333323333455
Q ss_pred eEEEEe
Q 046362 209 NVSFSS 214 (334)
Q Consensus 209 nI~f~n 214 (334)
+=.|++
T Consensus 183 ~N~F~~ 188 (190)
T smart00656 183 GNYFEA 188 (190)
T ss_pred CeEEEC
Confidence 555543
No 33
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.87 E-value=0.001 Score=59.22 Aligned_cols=123 Identities=23% Similarity=0.407 Sum_probs=73.9
Q ss_pred EEEEeEEEEcCCC------CceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeE
Q 046362 78 VTVRDIKINNSPL------CHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNV 151 (334)
Q Consensus 78 v~i~gi~i~n~~~------~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI 151 (334)
+.|+++++..... -.+.+..++++.|+||++.+. +.+|+.+..+....+.+..... .+.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEE
Confidence 3477777764432 347777888888999888874 4567777654444444433221 23333344667
Q ss_pred EEEeEEEcCC-ceEEEeccCccCCCCcEEEEEEEeEEEec-CCceEEEeeecCCcceEEeEEEEeEEEeCCceeE
Q 046362 152 HIHHISCGPG-HGISLGGLGKDKSVACVSDIVVEKISLQN-TLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPI 224 (334)
Q Consensus 152 ~I~nc~~~~~-~gi~IGS~g~~~~~~~i~nI~~~ni~i~~-~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i 224 (334)
.+.||.+..+ .|+..++ ++++++||.+.+ ...|+.+.... +++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCccCc
Confidence 7777777643 4543332 688888888877 56777776532 2666677776665543
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.0017 Score=60.52 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=91.2
Q ss_pred cEEEEceEeeEEEecc---EEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCC-----CCce
Q 046362 22 WINFKWLHNFTIQGNG---IVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSP-----LCHL 93 (334)
Q Consensus 22 ~i~~~~~~Nv~I~G~G---~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~-----~~~i 93 (334)
.+.+..+.|.+|.|.| ++-|-| +......||.|++|++...+ +..|
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~g--------------------------l~i~~a~NVIirNltf~~~~~~d~~~D~I 147 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGG--------------------------LKIRDAGNVIIRNLTFEGFYQGDPNYDAI 147 (345)
T ss_pred eEEEeeccccEEEeeccccEEEece--------------------------EEEEeCCcEEEEeeEEEeeccCCCCCCcE
Confidence 4788889999999976 454432 45566778899999988766 4678
Q ss_pred EE-ecccCEEEEeEEEECCCC---CCCCCc-eeEe-CeecEEEEeeEEecCCCeeeecCC--------ceeEEEEeEEEc
Q 046362 94 KF-DSSGGIKVKNIHISSPEN---SPNTDG-IHLQ-NTKDVEIQHSDIACGDDCVSIQTG--------CSNVHIHHISCG 159 (334)
Q Consensus 94 ~~-~~~~nV~i~~~~I~~~~~---~~ntDG-idi~-~s~nV~I~n~~i~~gDD~i~iksg--------~~nI~I~nc~~~ 159 (334)
.+ ...+|+.|+++++..... ....|| +|+. .+.+|+|.++.+...|-..-+++. -.+|++.+|.|.
T Consensus 148 si~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFk 227 (345)
T COG3866 148 SIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFK 227 (345)
T ss_pred EeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccc
Confidence 88 788999999999988432 234566 6776 589999999999998877766652 256999999997
Q ss_pred CC--c--eEEEec
Q 046362 160 PG--H--GISLGG 168 (334)
Q Consensus 160 ~~--~--gi~IGS 168 (334)
+. . .+++|.
T Consensus 228 n~~qR~PriRfG~ 240 (345)
T COG3866 228 NLYQRGPRIRFGM 240 (345)
T ss_pred cccccCCceEeeE
Confidence 52 2 478875
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.86 E-value=0.00031 Score=62.62 Aligned_cols=110 Identities=24% Similarity=0.428 Sum_probs=79.0
Q ss_pred CeEEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeec
Q 046362 67 PTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 67 P~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~ik 145 (334)
...++|..++++.|+++++.++....+.+..++...+.+..... ++.+. ++.++.+.+|.+..+++++ .
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~--~ 181 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGI--I 181 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSE--E
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCcee--E
Confidence 35788888999999999999998888888866555554433221 23333 3577888999999999994 3
Q ss_pred CCceeEEEEeEEEcC--CceEEEeccCccCCCCcEEEEEEEeEEEecCCceE
Q 046362 146 TGCSNVHIHHISCGP--GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGV 195 (334)
Q Consensus 146 sg~~nI~I~nc~~~~--~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi 195 (334)
.+.++++++||++.. ..||.+-.. .++.++|++|.++..|+
T Consensus 182 ~~~~~~~i~n~~~~~~~~~gi~i~~~---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 182 LGNNNITISNNTFEGNCGNGINIEGG---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEEEEEECEEEESSSSESEEEEEC---------SEEEEEEEEEESSSEEE
T ss_pred eecceEEEEeEEECCccceeEEEECC---------eEEEEEeEEEECCccCc
Confidence 334899999999975 468988652 23777777777776665
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.20 E-value=0.0043 Score=55.42 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=61.8
Q ss_pred EeEecEEEEeEEEEc---------------CCCCceEEecccCEEEEeEEEECCCC---CCCCCc-eeEe-CeecEEEEe
Q 046362 73 YASYNVTVRDIKINN---------------SPLCHLKFDSSGGIKVKNIHISSPEN---SPNTDG-IHLQ-NTKDVEIQH 132 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n---------------~~~~~i~~~~~~nV~i~~~~I~~~~~---~~ntDG-idi~-~s~nV~I~n 132 (334)
..++||.|++|++.+ .....+.+..++||.|++|++..... ....|| +|+. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 589999999999998 24457999999999999999988621 112555 6876 589999999
Q ss_pred eEEecCCCeeeecCC-------ceeEEEEeEEEcC
Q 046362 133 SDIACGDDCVSIQTG-------CSNVHIHHISCGP 160 (334)
Q Consensus 133 ~~i~~gDD~i~iksg-------~~nI~I~nc~~~~ 160 (334)
|.+...+.+..+++. ..+|++-++.+..
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 999876544444431 2689998888853
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.85 E-value=4.1 Score=39.11 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=51.0
Q ss_pred CceEEecccCEEEEeEEEECCCCC---CCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEE
Q 046362 91 CHLKFDSSGGIKVKNIHISSPENS---PNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHIS 157 (334)
Q Consensus 91 ~~i~~~~~~nV~i~~~~I~~~~~~---~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~ 157 (334)
+++-+..+.++.|.+.+|....+. .-..||.+..++.++|....|.-+.|||-.+. ++.-.+++..
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr 189 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNR 189 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccc
Confidence 457788889999999999876542 35669999999999999999999999998775 3333444433
No 38
>PLN02480 Probable pectinesterase
Probab=93.53 E-value=5.4 Score=38.62 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=39.9
Q ss_pred eEecEEEEeEEEEcCCC---------CceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeee
Q 046362 74 ASYNVTVRDIKINNSPL---------CHLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVS 143 (334)
Q Consensus 74 ~~~nv~i~gi~i~n~~~---------~~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ 143 (334)
..++++++||+|+|... -.+-+ ...+++.+.||++....| -+-.. .-.-..+||+|...=|=|
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~C~IeG~VDFI- 202 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHN-----TLFDY-KGRHYYHSCYIQGSIDFI- 202 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccc-----eeEeC-CCCEEEEeCEEEeeeeEE-
Confidence 45677788888887621 12222 335666666666665332 12111 123456666666553333
Q ss_pred ecCCceeEEEEeEEEc
Q 046362 144 IQTGCSNVHIHHISCG 159 (334)
Q Consensus 144 iksg~~nI~I~nc~~~ 159 (334)
.+. -..+++||++.
T Consensus 203 FG~--g~a~fe~C~i~ 216 (343)
T PLN02480 203 FGR--GRSIFHNCEIF 216 (343)
T ss_pred ccc--eeEEEEccEEE
Confidence 222 35666666664
No 39
>PLN02773 pectinesterase
Probab=93.21 E-value=2.9 Score=40.03 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=43.2
Q ss_pred EEEeEecEEEEeEEEEcCCCC------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeee
Q 046362 71 RFYASYNVTVRDIKINNSPLC------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSI 144 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~i 144 (334)
.+...+++.+++|+|+|...- .+.+ ..+.+.+.+|++....| -+-... -.-.++||+|...=|=| .
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QD-----TL~~~~-gr~yf~~c~IeG~VDFI-F 168 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQD-----TLYLHY-GKQYLRDCYIEGSVDFI-F 168 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccc-----eeEeCC-CCEEEEeeEEeecccEE-e
Confidence 344577888888888887421 1222 24666666666665332 222211 23566666666654433 3
Q ss_pred cCCceeEEEEeEEEc
Q 046362 145 QTGCSNVHIHHISCG 159 (334)
Q Consensus 145 ksg~~nI~I~nc~~~ 159 (334)
+. -..++++|++.
T Consensus 169 G~--g~a~Fe~c~i~ 181 (317)
T PLN02773 169 GN--STALLEHCHIH 181 (317)
T ss_pred ec--cEEEEEeeEEE
Confidence 33 34666666664
No 40
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=92.86 E-value=4 Score=40.00 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=61.1
Q ss_pred eEecEEEEeEEEEcCC-CCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEE
Q 046362 74 ASYNVTVRDIKINNSP-LCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVH 152 (334)
Q Consensus 74 ~~~nv~i~gi~i~n~~-~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~ 152 (334)
+-.+|++.++.+...+ +-.+-+..-.++++.++.+.+.. |..+.......|++|.+...--+|.-+ +...+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~ls 191 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKLS 191 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeEEEEEEEEeecC-CcceEE
Confidence 3346889999988777 55667777788999999998743 344444467899999997764444333 356888
Q ss_pred EEeEEEcCCc-eEEE
Q 046362 153 IHHISCGPGH-GISL 166 (334)
Q Consensus 153 I~nc~~~~~~-gi~I 166 (334)
|++|+|..+. ||.-
T Consensus 192 Vk~C~FekC~igi~s 206 (386)
T PF01696_consen 192 VKKCVFEKCVIGIVS 206 (386)
T ss_pred eeheeeeheEEEEEe
Confidence 9999998764 6643
No 41
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.51 E-value=6.7 Score=35.40 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=28.5
Q ss_pred CEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEe-cCCCeeeecCCceeEEEEeEEE
Q 046362 100 GIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIA-CGDDCVSIQTGCSNVHIHHISC 158 (334)
Q Consensus 100 nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~-~gDD~i~iksg~~nI~I~nc~~ 158 (334)
..+++|+.|-. +-.|||+..+ +.+|+|++.. .+.|++++|...-.++|.+.-.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 34455555532 2356776665 4567776664 4677777776543555554433
No 42
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=90.88 E-value=1.3 Score=43.65 Aligned_cols=57 Identities=30% Similarity=0.362 Sum_probs=35.7
Q ss_pred eeEEEEeEEEcCCceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCC
Q 046362 149 SNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 149 ~nI~I~nc~~~~~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~ 220 (334)
.|=.|+|.....++|+-+|--| .++.|+||++++|. ..|+.+++.. =.|.||++.+.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~~~--------~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRGTN--------KVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEECCS---------EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEeecC--------CceeeeEEEec
Confidence 5778889888888888887654 57889999988884 3566666542 24677777654
No 43
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=90.09 E-value=1.2 Score=41.70 Aligned_cols=140 Identities=16% Similarity=0.280 Sum_probs=78.4
Q ss_pred ecEEEEeEEEEcC-CCCceEEec-----ccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEec-CCCeeeec--C
Q 046362 76 YNVTVRDIKINNS-PLCHLKFDS-----SGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIAC-GDDCVSIQ--T 146 (334)
Q Consensus 76 ~nv~i~gi~i~n~-~~~~i~~~~-----~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~ik--s 146 (334)
++..|+|+.+.-- |--.+.+-+ -+|++|+++++....++.-..||+-. -..+.|.||.+.- +.|+|.-. -
T Consensus 122 sdc~ikgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvai 200 (464)
T PRK10123 122 SDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAI 200 (464)
T ss_pred CceEEeeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEe
Confidence 3567888777432 222343332 35788888888765443223344432 3457788888864 44565311 1
Q ss_pred CceeEEEEeEE-----EcCC---ceEEEeccCccC-----CCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEE
Q 046362 147 GCSNVHIHHIS-----CGPG---HGISLGGLGKDK-----SVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFS 213 (334)
Q Consensus 147 g~~nI~I~nc~-----~~~~---~gi~IGS~g~~~-----~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ 213 (334)
.-+||+|++-+ |..+ .||.||-.|..- ....|+|..+-|++-.+++.-+.+. .|..=.|+||.-+
T Consensus 201 ndr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhve--ngkhfvirnvkak 278 (464)
T PRK10123 201 NDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVE--NGKHFVIRNIKAK 278 (464)
T ss_pred cccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEec--CCcEEEEEeeecc
Confidence 23677766544 4433 578888665421 2456788888887765555444442 2322356666666
Q ss_pred eEEEe
Q 046362 214 SIQVW 218 (334)
Q Consensus 214 ni~~~ 218 (334)
||+-.
T Consensus 279 nitpd 283 (464)
T PRK10123 279 NITPD 283 (464)
T ss_pred ccCCC
Confidence 66543
No 44
>PLN02480 Probable pectinesterase
Probab=88.52 E-value=11 Score=36.50 Aligned_cols=112 Identities=9% Similarity=0.051 Sum_probs=69.3
Q ss_pred cccCEEEEeEEEECCCCC-----CCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccC
Q 046362 97 SSGGIKVKNIHISSPENS-----PNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLG 170 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~-----~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g 170 (334)
..++++++||+|.|.... ...-++-+. ....+.+.||.+....|-+-...+ .-.++||++.+.--+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~g--R~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKG--RHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCC--CEEEEeCEEEeeeeEEccc--
Confidence 357889999999986311 112345553 467889999999988888765543 5788889887655566664
Q ss_pred ccCCCCcEEEEEEEeEEEecCCc-----eEEEeeecCCcceEEeEEEEeEEEeCC
Q 046362 171 KDKSVACVSDIVVEKISLQNTLA-----GVRIKTWQGGIGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 171 ~~~~~~~i~nI~~~ni~i~~~~~-----gi~Ik~~~g~~G~i~nI~f~ni~~~~~ 220 (334)
-...|+||++..... .-.|.........-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 256788888875321 112332211112223467888888763
No 45
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=87.20 E-value=12 Score=36.66 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=56.3
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCc-eEEEeccCccCCCC
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGH-GISLGGLGKDKSVA 176 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~-gi~IGS~g~~~~~~ 176 (334)
=.+|++.|+++...+ ..-|+-+.+..++++.+|.+.+-. +.++... ....|+.|+|.++. |+.-.
T Consensus 120 M~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~~-~~~~VrGC~F~~C~~gi~~~--------- 185 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFH-GTCLESW-AGGEVRGCTFYGCWKGIVSR--------- 185 (386)
T ss_pred eeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCc-ceeEEEc-CCcEEeeeEEEEEEEEeecC---------
Confidence 358899999998754 234788888899999999998753 3455542 46899999997543 55332
Q ss_pred cEEEEEEEeEEEecCCceE
Q 046362 177 CVSDIVVEKISLQNTLAGV 195 (334)
Q Consensus 177 ~i~nI~~~ni~i~~~~~gi 195 (334)
+...+.|++|.+....-|+
T Consensus 186 ~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 186 GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CcceEEeeheeeeheEEEE
Confidence 2445555556555443333
No 46
>PLN02665 pectinesterase family protein
Probab=86.81 E-value=33 Score=33.58 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=74.6
Q ss_pred EEEEeEecEEEEeEEEEcCCC---------C--ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecC
Q 046362 70 LRFYASYNVTVRDIKINNSPL---------C--HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACG 138 (334)
Q Consensus 70 i~~~~~~nv~i~gi~i~n~~~---------~--~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g 138 (334)
.....++++..++|+++|... - .+.+ ..+...+.||++....| -+-.. .-.-..+||+|...
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QD-----TL~~~-~gr~yf~~CyIeG~ 220 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQD-----TLCDD-KGRHFFKDCYIEGT 220 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccc-----eeEeC-CCCEEEEeeEEeec
Confidence 334567888899999998632 1 2333 35778888888876433 22211 22467788888776
Q ss_pred CCeeeecCCceeEEEEeEEEcC-Cc---e-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEEeEEE
Q 046362 139 DDCVSIQTGCSNVHIHHISCGP-GH---G-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVKNVSF 212 (334)
Q Consensus 139 DD~i~iksg~~nI~I~nc~~~~-~~---g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~nI~f 212 (334)
=|=| .+. -..++++|++.. .. | |.-- ++ .+...-.-..|.||++.+....+.+. .| +.-..|.|
T Consensus 221 VDFI-FG~--g~a~fe~C~i~s~~~~~~g~ITA~--~r-~~~~~~~GfvF~~C~itg~~~~~yLGRpW----~~ysrvVf 290 (366)
T PLN02665 221 VDFI-FGS--GKSLYLNTELHVVGDGGLRVITAQ--AR-NSEAEDSGFSFVHCKVTGTGTGAYLGRAW----MSRPRVVF 290 (366)
T ss_pred ccee-ccc--cceeeEccEEEEecCCCcEEEEcC--CC-CCCCCCceEEEEeeEEecCCCceeecCCC----CCcceEEE
Confidence 5544 333 367788887753 22 1 1111 11 11112345678888887653223332 12 23456777
Q ss_pred EeEEEeCC
Q 046362 213 SSIQVWDV 220 (334)
Q Consensus 213 ~ni~~~~~ 220 (334)
.+..|.+.
T Consensus 291 ~~t~m~~~ 298 (366)
T PLN02665 291 AYTEMSSV 298 (366)
T ss_pred EccccCCe
Confidence 77777654
No 47
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=86.53 E-value=10 Score=34.95 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=41.4
Q ss_pred cCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEec-CCCeeee-----cCCceeEEEEeEEEcC-CceEEEeccCc
Q 046362 99 GGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIAC-GDDCVSI-----QTGCSNVHIHHISCGP-GHGISLGGLGK 171 (334)
Q Consensus 99 ~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~i-----ksg~~nI~I~nc~~~~-~~gi~IGS~g~ 171 (334)
.+..|++++|.++... -.-|+.+.++ +.+|+||+|.. ..++|.+ +....+++|++..+.. ..||++-..
T Consensus 97 ~~~~i~GvtItN~n~~-~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-- 172 (246)
T PF07602_consen 97 NNATISGVTITNPNIA-RGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN-- 172 (246)
T ss_pred CCCEEEEEEEEcCCCC-cceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc--
Confidence 3444455555443110 1114444443 55555555544 2334432 2233455566665553 456766432
Q ss_pred cCCCCcEEEEEEEeEEEecCCceEEEe
Q 046362 172 DKSVACVSDIVVEKISLQNTLAGVRIK 198 (334)
Q Consensus 172 ~~~~~~i~nI~~~ni~i~~~~~gi~Ik 198 (334)
...++| .++|..+.+...||.+.
T Consensus 173 ---~~~~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 173 ---AAPVEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred ---cCCccc-eeeccEEEeCCcCeEee
Confidence 112222 33555555554566544
No 48
>PLN02773 pectinesterase
Probab=85.19 E-value=22 Score=34.09 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=78.1
Q ss_pred EEecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCcc
Q 046362 94 KFDSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKD 172 (334)
Q Consensus 94 ~~~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~ 172 (334)
....++++.++|++|.|.......-.+-+. ....+.+.||.+....|-+-...+ .-.++||++.+.--+=+|.
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~g--r~yf~~c~IeG~VDFIFG~---- 170 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYG--KQYLRDCYIEGSVDFIFGN---- 170 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCC--CEEEEeeEEeecccEEeec----
Confidence 334578999999999996432122233333 368899999999999999887754 6889999998766677775
Q ss_pred CCCCcEEEEEEEeEEEecCCceEEEeeecCC-cceEEeEEEEeEEEeCCc
Q 046362 173 KSVACVSDIVVEKISLQNTLAGVRIKTWQGG-IGSVKNVSFSSIQVWDVK 221 (334)
Q Consensus 173 ~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~-~G~i~nI~f~ni~~~~~~ 221 (334)
-...|++|++.....| .|...... ...-....|.|+++....
T Consensus 171 ------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 1468999998765444 34322110 011234679999998753
No 49
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=84.94 E-value=51 Score=34.11 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=38.9
Q ss_pred EeEecEEEEeEEEEcCCCC----ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCC
Q 046362 73 YASYNVTVRDIKINNSPLC----HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTG 147 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~~----~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg 147 (334)
...+++..++|+|+|...- .+- -...+.+.+.+|+|....| -+-..+ ..-..++|+|...=|=| ++.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDFI-FG~- 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDFI-FGN- 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCEE-ecC-
Confidence 3456788888888876431 111 1224566666666665332 121111 22355666665554433 222
Q ss_pred ceeEEEEeEEEc
Q 046362 148 CSNVHIHHISCG 159 (334)
Q Consensus 148 ~~nI~I~nc~~~ 159 (334)
-..+++||.+.
T Consensus 399 -a~avfq~c~i~ 409 (553)
T PLN02708 399 -SAAVFQDCAIL 409 (553)
T ss_pred -ceEEEEccEEE
Confidence 35566666553
No 50
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=84.63 E-value=16 Score=34.69 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=36.0
Q ss_pred EeEecEEEEeEEEEcCCCC------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 73 YASYNVTVRDIKINNSPLC------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~~------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
...+++.+++|+|.|.... .|.+ ..+.+.+.+|++.... |-+-... ....++||+|...-|=| .+.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFI-fG~ 155 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFI-FGN 155 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEE-EES
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEE-ECC
Confidence 3457888888888885321 2332 3455666666665532 2233222 23455666666554433 222
Q ss_pred CceeEEEEeEEEc
Q 046362 147 GCSNVHIHHISCG 159 (334)
Q Consensus 147 g~~nI~I~nc~~~ 159 (334)
+ ...++||++.
T Consensus 156 ~--~a~f~~c~i~ 166 (298)
T PF01095_consen 156 G--TAVFENCTIH 166 (298)
T ss_dssp S--EEEEES-EEE
T ss_pred e--eEEeeeeEEE
Confidence 2 4556666553
No 51
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=83.70 E-value=27 Score=36.12 Aligned_cols=112 Identities=9% Similarity=0.145 Sum_probs=73.5
Q ss_pred ecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCC
Q 046362 96 DSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKS 174 (334)
Q Consensus 96 ~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~ 174 (334)
...+++..+|++|.|.......-.+-+. .+..+.+.||.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~------ 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN------ 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC------
Confidence 4567899999999987532223344443 367889999999998888877654 4578999998766677774
Q ss_pred CCcEEEEEEEeEEEecCC------ce--EEEeeecCC--cceEEeEEEEeEEEeCC
Q 046362 175 VACVSDIVVEKISLQNTL------AG--VRIKTWQGG--IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 175 ~~~i~nI~~~ni~i~~~~------~g--i~Ik~~~g~--~G~i~nI~f~ni~~~~~ 220 (334)
-.+.|+||.+.-.. .| -.|.. .++ ...-..+.|.|+++...
T Consensus 399 ----a~avfq~c~i~~~~~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 ----SAAVFQDCAILIAPRQLKPEKGENNAVTA-HGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ----ceEEEEccEEEEeccccCCCCCCceEEEe-CCCCCCCCCceEEEEccEEecC
Confidence 25778888887321 11 22322 221 12334678999998764
No 52
>PLN02665 pectinesterase family protein
Probab=83.65 E-value=37 Score=33.27 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=73.9
Q ss_pred EEecccCEEEEeEEEECCCCCC-----CCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 94 KFDSSGGIKVKNIHISSPENSP-----NTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 94 ~~~~~~nV~i~~~~I~~~~~~~-----ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
....++++..+|++|.|....+ ..-.+-+. ....+.+.||.+....|-+-...+ .-.++||++.+.--+=+|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~g--r~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKG--RHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCC--CEEEEeeEEeeccceecc
Confidence 3445789999999999964211 11223332 357899999999998888876554 578899999876666676
Q ss_pred ccCccCCCCcEEEEEEEeEEEecCCce--EEEeeecCC--cceEEeEEEEeEEEeCCc
Q 046362 168 GLGKDKSVACVSDIVVEKISLQNTLAG--VRIKTWQGG--IGSVKNVSFSSIQVWDVK 221 (334)
Q Consensus 168 S~g~~~~~~~i~nI~~~ni~i~~~~~g--i~Ik~~~g~--~G~i~nI~f~ni~~~~~~ 221 (334)
.- ...|+||++.....+ -.|... ++ ...-....|.|+++....
T Consensus 227 ~g----------~a~fe~C~i~s~~~~~~g~ITA~-~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 227 SG----------KSLYLNTELHVVGDGGLRVITAQ-ARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred cc----------ceeeEccEEEEecCCCcEEEEcC-CCCCCCCCceEEEEeeEEecCC
Confidence 41 446788888754443 223322 11 112235569999998754
No 53
>PLN02682 pectinesterase family protein
Probab=83.39 E-value=36 Score=33.34 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=21.6
Q ss_pred eecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
...+.+.||.+....|-+-...+ .-.++||++.+.--+=+|
T Consensus 195 gDr~~fy~C~f~G~QDTLy~~~g--Rqyf~~C~IeG~VDFIFG 235 (369)
T PLN02682 195 ADTAAFYGCKFLGAQDTLYDHLG--RHYFKDCYIEGSVDFIFG 235 (369)
T ss_pred CCcEEEEcceEeccccceEECCC--CEEEEeeEEcccccEEec
Confidence 45555666666655555544432 345566666544444444
No 54
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=82.91 E-value=55 Score=33.80 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=71.7
Q ss_pred EEeEecEEEEeEEEEcCCCC------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 72 FYASYNVTVRDIKINNSPLC------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
....+++..++|+++|.... .+.+ ..+.+.+.+|+|....| -+-.. +..-..+||+|...=|=| ++
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG 384 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQD-----TLYVH-SFRQFYRECDIYGTIDYI-FG 384 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccc-----hhccC-CCceEEEeeEEeecccee-ec
Confidence 33467888899999887543 1222 36777888888877443 12222 234577788887765544 33
Q ss_pred CCceeEEEEeEEEcCC---ce--EEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEEeE
Q 046362 146 TGCSNVHIHHISCGPG---HG--ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFSSI 215 (334)
Q Consensus 146 sg~~nI~I~nc~~~~~---~g--i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ni 215 (334)
. -..+++||.+..- .| -.|=..++ .+...-.-+.|.||++....... ..++.=|+. ..-..+.|-+.
T Consensus 385 ~--a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s 461 (541)
T PLN02416 385 N--AAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLES 461 (541)
T ss_pred c--ceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEec
Confidence 3 4677777777421 11 11111111 11223346778888876542110 112222221 23455666666
Q ss_pred EEeCC
Q 046362 216 QVWDV 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
.|.+.
T Consensus 462 ~i~~~ 466 (541)
T PLN02416 462 YIDDF 466 (541)
T ss_pred ccCCe
Confidence 66553
No 55
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=82.08 E-value=2.1 Score=28.02 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=11.4
Q ss_pred eeEeCeecEEEEeeEEecCCCeeeec
Q 046362 120 IHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 120 idi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
|.+..|.+.+|++..+....|+|.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI~~~ 27 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGIYLT 27 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEEEEE
Confidence 34444444444444444444444443
No 56
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=82.03 E-value=2.9 Score=27.30 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=30.4
Q ss_pred eEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEec
Q 046362 93 LKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIAC 137 (334)
Q Consensus 93 i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~ 137 (334)
|.+..|.+.+|++-++.. +.|||.+..|.+-+|++..+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 567777777888888876 5668888888787887777654
No 57
>PLN02197 pectinesterase
Probab=81.74 E-value=71 Score=33.35 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=78.7
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+++|.... .+-+ ...+...+.+|.|....| -+-..+ ..-..+||+|...=|=| ++.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 432 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD-----TLYVNN-GRQFYRNIVVSGTVDFI-FGK 432 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc-----ceEecC-CCEEEEeeEEEeccccc-ccc
Confidence 34567899999999996432 2222 236888889999887543 232222 34578888888765544 333
Q ss_pred CceeEEEEeEEEcC---Cce--EEEeccCccCCCCcEEEEEEEeEEEecCCce----EEEeeecCCc-ceEEeEEEEeEE
Q 046362 147 GCSNVHIHHISCGP---GHG--ISLGGLGKDKSVACVSDIVVEKISLQNTLAG----VRIKTWQGGI-GSVKNVSFSSIQ 216 (334)
Q Consensus 147 g~~nI~I~nc~~~~---~~g--i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~g----i~Ik~~~g~~-G~i~nI~f~ni~ 216 (334)
--.+++||.+.. ..| -.|=..++......-.-+.|.||++.....- ...++.=|+. ..-..+.|-+..
T Consensus 433 --a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~ 510 (588)
T PLN02197 433 --SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTE 510 (588)
T ss_pred --eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEecc
Confidence 358888888752 112 1221111110012345688889988775321 1122332321 345667777777
Q ss_pred EeCC
Q 046362 217 VWDV 220 (334)
Q Consensus 217 ~~~~ 220 (334)
|.+.
T Consensus 511 ~~~~ 514 (588)
T PLN02197 511 IGDL 514 (588)
T ss_pred cCCe
Confidence 7654
No 58
>PLN02432 putative pectinesterase
Probab=81.57 E-value=46 Score=31.58 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=20.6
Q ss_pred eecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
...+.+.+|.+....|.+-...+ .-.++||.+.+.--+-+|
T Consensus 120 gDr~~f~~c~~~G~QDTLy~~~g--r~yf~~c~I~G~VDFIFG 160 (293)
T PLN02432 120 GDRAAFYGCRILSYQDTLLDDTG--RHYYRNCYIEGATDFICG 160 (293)
T ss_pred CCcEEEEcceEecccceeEECCC--CEEEEeCEEEecccEEec
Confidence 34555555555555555544332 345555555544344444
No 59
>PLN02634 probable pectinesterase
Probab=81.55 E-value=34 Score=33.38 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=20.1
Q ss_pred eecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
...+.+.+|.+....|-+-...+ .-.++||++.+.--+=+|
T Consensus 181 gDra~f~~C~f~G~QDTL~~~~g--R~yf~~CyIeG~VDFIFG 221 (359)
T PLN02634 181 GDKAFFFGCGFYGAQDTLCDDAG--RHYFKECYIEGSIDFIFG 221 (359)
T ss_pred CCcEEEEEeEEecccceeeeCCC--CEEEEeeEEcccccEEcC
Confidence 34455555555555555543332 345555555543334444
No 60
>PLN02682 pectinesterase family protein
Probab=81.23 E-value=57 Score=31.95 Aligned_cols=133 Identities=10% Similarity=0.088 Sum_probs=84.5
Q ss_pred EEEeEecEEEEeEEEEcCCCC---------ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCC
Q 046362 71 RFYASYNVTVRDIKINNSPLC---------HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDD 140 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~---------~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD 140 (334)
.....+++..++|+++|...+ .+-+ ...+...+.+|++....| -+-.. .-.-..+||+|...=|
T Consensus 158 ~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 158 FAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD-----TLYDH-LGRHYFKDCYIEGSVD 231 (369)
T ss_pred EEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc-----ceEEC-CCCEEEEeeEEccccc
Confidence 345567999999999997422 2222 347899999999998543 23222 2357899999998766
Q ss_pred eeeecCCceeEEEEeEEEcC---Cce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEEeEEEEeE
Q 046362 141 CVSIQTGCSNVHIHHISCGP---GHG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVKNVSFSSI 215 (334)
Q Consensus 141 ~i~iksg~~nI~I~nc~~~~---~~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~nI~f~ni 215 (334)
=| .+. -...+++|++.. ..| |.-- ++ .....-....|.||++.+.. .+.+. .| +.-..+.|.|.
T Consensus 232 FI-FG~--g~a~Fe~C~I~s~~~~~G~ITA~--~r-~~~~~~~GfvF~~C~itg~g-~~yLGRpW----~~yarvVf~~t 300 (369)
T PLN02682 232 FI-FGN--GLSLYEGCHLHAIARNFGALTAQ--KR-QSVLEDTGFSFVNCKVTGSG-ALYLGRAW----GTFSRVVFAYT 300 (369)
T ss_pred EE-ecC--ceEEEEccEEEEecCCCeEEecC--CC-CCCCCCceEEEEeeEecCCC-ceEeecCC----CCcceEEEEec
Confidence 55 443 479999999863 223 2221 11 11223357889999997742 22332 22 24568888888
Q ss_pred EEeCC
Q 046362 216 QVWDV 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
.|.+.
T Consensus 301 ~m~~~ 305 (369)
T PLN02682 301 YMDNI 305 (369)
T ss_pred cCCCc
Confidence 88775
No 61
>PLN02916 pectinesterase family protein
Probab=80.47 E-value=50 Score=33.74 Aligned_cols=81 Identities=7% Similarity=0.103 Sum_probs=43.6
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCCC
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVA 176 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~~ 176 (334)
.+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 276 ~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 345 (502)
T PLN02916 276 GDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD-------- 345 (502)
T ss_pred CCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC--------
Confidence 45666666666665322222233332 245666666666666666655543 3456666666544455553
Q ss_pred cEEEEEEEeEEEec
Q 046362 177 CVSDIVVEKISLQN 190 (334)
Q Consensus 177 ~i~nI~~~ni~i~~ 190 (334)
-...|+||.+..
T Consensus 346 --a~avFq~C~I~~ 357 (502)
T PLN02916 346 --AAVVFQNCDIFV 357 (502)
T ss_pred --ceEEEecCEEEE
Confidence 134566666643
No 62
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=80.10 E-value=16 Score=34.53 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=37.6
Q ss_pred CCceeEeeEEEEEEEEeeccccEEEEcCCCCCeecEEEEeEEEEcCCCc-cc---ccceeeeceEEeecccccCC
Q 046362 240 TGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKY-QS---FQQALCWNSYGKSQAPLVPS 310 (334)
Q Consensus 240 ~~~~~i~nIt~~nI~~t~~~~~~~i~~~~~~~~~nI~f~nv~i~~~~g~-~~---~~~~~c~~v~g~~~~~~~P~ 310 (334)
+....++|+.+.||+++.-..-+.+.-...--++||.-+||+-...+.. -. .+-+-|.|--=.-..|+..+
T Consensus 240 pe~q~vknfvvanitgs~crqlvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsa 314 (464)
T PRK10123 240 PEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSA 314 (464)
T ss_pred chhhhhhhEEEEeccCcChhheEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEecccccccc
Confidence 4567899999999998643322333221212367777777765443321 00 23345555433334555554
No 63
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=80.01 E-value=45 Score=33.24 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=53.4
Q ss_pred EEEEeEecEEEEeEEEEcC--CC-----CceEE--ecccCEEEEeEEEECCCCCCCCCcee--E----eCeecEEEEeeE
Q 046362 70 LRFYASYNVTVRDIKINNS--PL-----CHLKF--DSSGGIKVKNIHISSPENSPNTDGIH--L----QNTKDVEIQHSD 134 (334)
Q Consensus 70 i~~~~~~nv~i~gi~i~n~--~~-----~~i~~--~~~~nV~i~~~~I~~~~~~~ntDGid--i----~~s~nV~I~n~~ 134 (334)
+.+. .+.++|+||.++|. |. +.... ..|.+.++.++.|..-.. ++.+.-+ + ...+|-+|++|.
T Consensus 62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~ 139 (425)
T PF14592_consen 62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNY 139 (425)
T ss_dssp EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-E
T ss_pred EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccE
Confidence 4444 36789999999873 22 11212 257888999999886421 2222211 2 236888999999
Q ss_pred EecC---CCeeeec---CC----ceeEEEEeEEEcC-----Cc---eEEEeccCccCCCCcEEEEEEEeEEEecCC---c
Q 046362 135 IACG---DDCVSIQ---TG----CSNVHIHHISCGP-----GH---GISLGGLGKDKSVACVSDIVVEKISLQNTL---A 193 (334)
Q Consensus 135 i~~g---DD~i~ik---sg----~~nI~I~nc~~~~-----~~---gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~---~ 193 (334)
|... +--+.+. .+ ...-+|+.++|.. +. .|+||.... .-.-++.+|++..|.+++ .
T Consensus 140 F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~---S~~~s~t~Ve~NlFe~cdGE~E 216 (425)
T PF14592_consen 140 FQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHS---SMSDSNTTVENNLFERCDGEVE 216 (425)
T ss_dssp EE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT----B-----EEES-EEEEE-SSSE
T ss_pred eeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccc---cccccceeeecchhhhcCCcee
Confidence 9763 1223322 11 2356788888862 33 399996532 222355556665555543 3
Q ss_pred eEEEeee
Q 046362 194 GVRIKTW 200 (334)
Q Consensus 194 gi~Ik~~ 200 (334)
-|.+|+.
T Consensus 217 IISvKS~ 223 (425)
T PF14592_consen 217 IISVKSS 223 (425)
T ss_dssp EEEEESB
T ss_pred EEEeecC
Confidence 4666664
No 64
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=78.80 E-value=52 Score=32.84 Aligned_cols=71 Identities=14% Similarity=0.269 Sum_probs=34.7
Q ss_pred cccCEEEEeEEEECCCCC----CCCCceeEe-CeecEEEEeeEEecCCCeeeecCC----------ceeEEEEeEEEcCC
Q 046362 97 SSGGIKVKNIHISSPENS----PNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTG----------CSNVHIHHISCGPG 161 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~----~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg----------~~nI~I~nc~~~~~ 161 (334)
..+++.++|++|.|.... .+.-.+-+. ....+.+.+|.|....|-+-..+. ...-.++||++.+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 345666666666664310 111122222 245566666666666665554210 11356666666554
Q ss_pred ceEEEe
Q 046362 162 HGISLG 167 (334)
Q Consensus 162 ~gi~IG 167 (334)
--+=+|
T Consensus 284 VDFIFG 289 (422)
T PRK10531 284 VDFVFG 289 (422)
T ss_pred ccEEcc
Confidence 445554
No 65
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=78.70 E-value=51 Score=29.81 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=87.0
Q ss_pred EEEEEeEecEEEEeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCee-cEEEEeeEEecCCCeeeecCC
Q 046362 69 ALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTK-DVEIQHSDIACGDDCVSIQTG 147 (334)
Q Consensus 69 ~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~-nV~I~n~~i~~gDD~i~iksg 147 (334)
++.+. +..+|+++.|-.+....+|... +-+|+|+.... --.|++-+.+.. .++|.+.-....+|=|-=-.+
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng 127 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG 127 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecC
Confidence 44444 5789999999888889999997 77888888765 257788888766 888888888887776633333
Q ss_pred ceeEEEEeEEEcCCceEEEeccCccCC-CCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEe
Q 046362 148 CSNVHIHHISCGPGHGISLGGLGKDKS-VACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSS 214 (334)
Q Consensus 148 ~~nI~I~nc~~~~~~gi~IGS~g~~~~-~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~n 214 (334)
.-.++|+|-+.. ..|--+=|-|.-.. .+.=+.|.+++........-..|...+++...|+++....
T Consensus 128 ~Gtv~I~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 GGTVTIKNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp SEEEEEEEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred ceeEEEEeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 456888885443 33422323332111 1345667777765544333356777778777777777665
No 66
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=78.56 E-value=63 Score=33.23 Aligned_cols=82 Identities=9% Similarity=0.179 Sum_probs=43.5
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. ....+.+.+|.+....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 311 ~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 381 (529)
T PLN02170 311 MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN------- 381 (529)
T ss_pred EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc-------
Confidence 345666666666665322122233332 245666667777666666655443 3456666666544455553
Q ss_pred CcEEEEEEEeEEEec
Q 046362 176 ACVSDIVVEKISLQN 190 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~ 190 (334)
-...|+||++..
T Consensus 382 ---a~avFq~C~I~~ 393 (529)
T PLN02170 382 ---SAVVFQSCNIAA 393 (529)
T ss_pred ---ceEEEeccEEEE
Confidence 134566666653
No 67
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=77.87 E-value=92 Score=32.38 Aligned_cols=136 Identities=10% Similarity=0.052 Sum_probs=76.0
Q ss_pred EeEecEEEEeEEEEcCCCC----ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCC
Q 046362 73 YASYNVTVRDIKINNSPLC----HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTG 147 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~~----~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg 147 (334)
...+++..++|+++|.... .+- -...+...+.+|+|....| -+-..+ ..-..+||+|...=|=| ++
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG-- 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-----TLYTHS-LRQFYRECDIYGTVDFI-FG-- 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-----ceEECC-CCEEEEeeEEeccccee-cc--
Confidence 4457899999999986432 121 2346788888888887433 233222 34588888887765544 33
Q ss_pred ceeEEEEeEEEcCC------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEEeE
Q 046362 148 CSNVHIHHISCGPG------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFSSI 215 (334)
Q Consensus 148 ~~nI~I~nc~~~~~------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ni 215 (334)
.-.++++||.+..- .+ |.- .++ .+...-..+.|.||++....... ..+++=|+. ..-..+.|.+.
T Consensus 408 ~a~avfq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s 484 (566)
T PLN02713 408 NAAVVFQNCNLYPRLPMQGQFNTITA--QGR-TDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQS 484 (566)
T ss_pred cceEEEeccEEEEecCCCCCcceeee--cCC-CCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEec
Confidence 34788888887521 12 221 111 12223456788888887653210 112221221 23456677777
Q ss_pred EEeCC
Q 046362 216 QVWDV 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
.|.+.
T Consensus 485 ~~~~~ 489 (566)
T PLN02713 485 YIDGL 489 (566)
T ss_pred ccCCe
Confidence 77654
No 68
>PLN02671 pectinesterase
Probab=77.80 E-value=57 Score=31.87 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=23.4
Q ss_pred eecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
...+.+.||.+....|-+-...+ .-.++||++.+.--+=+|
T Consensus 185 gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG 225 (359)
T PLN02671 185 GDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFG 225 (359)
T ss_pred CccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEec
Confidence 45666666666666666544433 356666666544444454
No 69
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=77.40 E-value=93 Score=32.15 Aligned_cols=138 Identities=10% Similarity=0.024 Sum_probs=76.7
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+++|.... .+- ....+...+.+|+|....| -+-..+ ..-..+||+|...=|=| ++.
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 380 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD-----TLMVHS-QRQFYRECYIYGTVDFI-FGN 380 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc-----hhccCC-CceEEEeeEEeeccceE-ecc
Confidence 34567899999999987542 222 2236788888888887543 222222 23478888888765544 333
Q ss_pred CceeEEEEeEEEcCC------ceEEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEEeE
Q 046362 147 GCSNVHIHHISCGPG------HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFSSI 215 (334)
Q Consensus 147 g~~nI~I~nc~~~~~------~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ni 215 (334)
-..+++||.+..- .| .|=-.++ .....-.-+.|.||++....... ..++.=|+. +.-..+.|-+.
T Consensus 381 --a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t 456 (539)
T PLN02995 381 --AAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQT 456 (539)
T ss_pred --cceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCcceEEEec
Confidence 4688888887531 12 1111111 11223457888888887743211 112222321 23456777777
Q ss_pred EEeCC
Q 046362 216 QVWDV 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
.|.+.
T Consensus 457 ~~~~~ 461 (539)
T PLN02995 457 YLDNV 461 (539)
T ss_pred cccCc
Confidence 77664
No 70
>PLN02176 putative pectinesterase
Probab=76.43 E-value=77 Score=30.72 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=45.1
Q ss_pred cccCEEEEeEEEECCCCC------CCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEecc
Q 046362 97 SSGGIKVKNIHISSPENS------PNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGL 169 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~------~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~ 169 (334)
..+++..+|++|.|.... .....+-+. ....+.+.+|.+....|-+-...+ .-.++||++.+.--+=+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~g--Rqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKG--RHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCCc--CEEEEecEEEecccEEecC-
Confidence 356666666666664321 111222222 246677777777776666655443 4666777776554455553
Q ss_pred CccCCCCcEEEEEEEeEEEec
Q 046362 170 GKDKSVACVSDIVVEKISLQN 190 (334)
Q Consensus 170 g~~~~~~~i~nI~~~ni~i~~ 190 (334)
-...|+||++..
T Consensus 197 ---------a~a~Fe~C~I~s 208 (340)
T PLN02176 197 ---------AQSIFEGCTLKL 208 (340)
T ss_pred ---------ceEEEeccEEEE
Confidence 135566666653
No 71
>PLN02634 probable pectinesterase
Probab=75.74 E-value=83 Score=30.74 Aligned_cols=130 Identities=10% Similarity=0.069 Sum_probs=82.4
Q ss_pred EeEecEEEEeEEEEcCCCC-----------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCe
Q 046362 73 YASYNVTVRDIKINNSPLC-----------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDC 141 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~~-----------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~ 141 (334)
...+++..++|+++|.... .+.+ ..+...+.+|.+....| -+-.. .-.-..+||+|...=|=
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v-~gDra~f~~C~f~G~QD-----TL~~~-~gR~yf~~CyIeG~VDF 218 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRI-SGDKAFFFGCGFYGAQD-----TLCDD-AGRHYFKECYIEGSIDF 218 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEe-cCCcEEEEEeEEecccc-----eeeeC-CCCEEEEeeEEcccccE
Confidence 3457899999999997421 2333 47889999999997543 23222 23578999999887665
Q ss_pred eeecCCceeEEEEeEEEcC---Cce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEEeEEEEeEE
Q 046362 142 VSIQTGCSNVHIHHISCGP---GHG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVKNVSFSSIQ 216 (334)
Q Consensus 142 i~iksg~~nI~I~nc~~~~---~~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~nI~f~ni~ 216 (334)
| .+. -...++||++.. ..| |.- .++ .+...-.-..|.||++.+.. -+.+. .| +.-..+.|.+..
T Consensus 219 I-FG~--g~a~Fe~C~I~s~~~~~g~ITA--~~R-~~~~~~~GfvF~~C~vtg~g-~~yLGRPW----~~yarvVf~~t~ 287 (359)
T PLN02634 219 I-FGN--GRSMYKDCELHSIASRFGSIAA--HGR-TCPEEKTGFAFVGCRVTGTG-PLYVGRAM----GQYSRIVYAYTY 287 (359)
T ss_pred E-cCC--ceEEEeccEEEEecCCCcEEEe--CCC-CCCCCCcEEEEEcCEEcCCc-ceEecCCC----CCcceEEEEecc
Confidence 4 343 478899999864 123 222 111 12233357899999997642 12222 12 345678888888
Q ss_pred EeCC
Q 046362 217 VWDV 220 (334)
Q Consensus 217 ~~~~ 220 (334)
|.+.
T Consensus 288 l~~~ 291 (359)
T PLN02634 288 FDAV 291 (359)
T ss_pred cCCE
Confidence 8764
No 72
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=75.52 E-value=92 Score=32.03 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=48.6
Q ss_pred ecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCC
Q 046362 96 DSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKS 174 (334)
Q Consensus 96 ~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~ 174 (334)
...+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC------
Confidence 3456677777777775432222333333 356677777777777776665543 3466777776555555653
Q ss_pred CCcEEEEEEEeEEEec
Q 046362 175 VACVSDIVVEKISLQN 190 (334)
Q Consensus 175 ~~~i~nI~~~ni~i~~ 190 (334)
-...|+||++..
T Consensus 362 ----a~avf~~C~i~~ 373 (520)
T PLN02201 362 ----ATAVFQNCQILA 373 (520)
T ss_pred ----ceEEEEccEEEE
Confidence 135667777654
No 73
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=75.24 E-value=27 Score=35.97 Aligned_cols=83 Identities=10% Similarity=0.145 Sum_probs=47.9
Q ss_pred ecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCC
Q 046362 96 DSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKS 174 (334)
Q Consensus 96 ~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~ 174 (334)
...+++..+|++|.|.....+.-.+-+. ....+.+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~------ 387 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGN------ 387 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccC------
Confidence 3456677777777765432222333332 356677777777777666655543 3467777776554555553
Q ss_pred CCcEEEEEEEeEEEec
Q 046362 175 VACVSDIVVEKISLQN 190 (334)
Q Consensus 175 ~~~i~nI~~~ni~i~~ 190 (334)
-...|+||++..
T Consensus 388 ----a~avfq~C~i~~ 399 (537)
T PLN02506 388 ----GAAVLQNCKIYT 399 (537)
T ss_pred ----ceeEEeccEEEE
Confidence 135566666653
No 74
>PLN02497 probable pectinesterase
Probab=74.87 E-value=68 Score=30.97 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=19.3
Q ss_pred eecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
...+.+.||.+....|-+-...+ .-.++||++.+.--+=+|
T Consensus 149 gDr~~fy~C~f~G~QDTLy~~~g--Rqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 149 GDKSAFYSCGFAGVQDTLWDSDG--RHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred CCcEEEEeeEEeccccceeeCCC--cEEEEeCEEEecccEEcc
Confidence 34455555555555555433322 345555555443334444
No 75
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=74.42 E-value=80 Score=32.52 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=37.5
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEec
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGG 168 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS 168 (334)
.+++..+|++|.|.......-.+-+. .+..+.+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 304 a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~ 373 (530)
T PLN02933 304 GKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN 373 (530)
T ss_pred CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC
Confidence 45666666666664322122233332 245666677777666666655443 3466677666554555553
No 76
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=74.33 E-value=45 Score=31.60 Aligned_cols=111 Identities=9% Similarity=0.089 Sum_probs=65.9
Q ss_pred cccCEEEEeEEEECCCCCCCC--CceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCC
Q 046362 97 SSGGIKVKNIHISSPENSPNT--DGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKS 174 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~nt--DGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~ 174 (334)
..+++.++|++|.|....... -++.+ ....+.+.+|.+....|-+-...+ ...++||++.+.--+=+|.-
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~~----- 156 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGNG----- 156 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEESS-----
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECCe-----
Confidence 468999999999986421112 23343 357899999999999998887764 67899999987767888751
Q ss_pred CCcEEEEEEEeEEEecCC----ceEEEeeec-CCcceEEeEEEEeEEEeCC
Q 046362 175 VACVSDIVVEKISLQNTL----AGVRIKTWQ-GGIGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 175 ~~~i~nI~~~ni~i~~~~----~gi~Ik~~~-g~~G~i~nI~f~ni~~~~~ 220 (334)
...|+||++.... .+..|.... .....-....|.|+++...
T Consensus 157 -----~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 157 -----TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -----EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred -----eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 4468888887532 123443321 0112345678999999864
No 77
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=72.77 E-value=36 Score=35.29 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=46.9
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc-------
Confidence 346677777777765432222333332 356667777777776666655543 3466777776554555553
Q ss_pred CcEEEEEEEeEEEec
Q 046362 176 ACVSDIVVEKISLQN 190 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~ 190 (334)
-.+.|+||.+..
T Consensus 409 ---a~avfq~C~i~~ 420 (566)
T PLN02713 409 ---AAVVFQNCNLYP 420 (566)
T ss_pred ---ceEEEeccEEEE
Confidence 145666777653
No 78
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=72.10 E-value=41 Score=31.06 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=59.1
Q ss_pred CeecEEEEeeEEecCCC----eeeecCCceeEEEEeEEEcC--CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEE
Q 046362 124 NTKDVEIQHSDIACGDD----CVSIQTGCSNVHIHHISCGP--GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRI 197 (334)
Q Consensus 124 ~s~nV~I~n~~i~~gDD----~i~iksg~~nI~I~nc~~~~--~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~I 197 (334)
...+..|+...|.+.+. +|.+.+ .+.+|+||+|.. .+||.+-... ....+.+++|++..+.....|+.+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i 169 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIES--SSPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISI 169 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEec--CCcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCcCeEE
Confidence 34455666666666532 566765 389999999975 4577663211 134688888999999888889988
Q ss_pred eeecCCcceEEeEEEEeEEEeCCceeEEEE
Q 046362 198 KTWQGGIGSVKNVSFSSIQVWDVKVPIIID 227 (334)
Q Consensus 198 k~~~g~~G~i~nI~f~ni~~~~~~~~i~I~ 227 (334)
..... + ++| .++|-.+++-...|.+.
T Consensus 170 ~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 170 SDNAA--P-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred EcccC--C-ccc-eeeccEEEeCCcCeEee
Confidence 76532 2 222 22444554433466554
No 79
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=70.80 E-value=1.2e+02 Score=30.43 Aligned_cols=145 Identities=8% Similarity=0.112 Sum_probs=84.5
Q ss_pred EEEEeEecEEEEeEEEEcCCCC--------ce-EEecccCEEEEeEEEECCCCCCCC------CceeEeCeecEEEEeeE
Q 046362 70 LRFYASYNVTVRDIKINNSPLC--------HL-KFDSSGGIKVKNIHISSPENSPNT------DGIHLQNTKDVEIQHSD 134 (334)
Q Consensus 70 i~~~~~~nv~i~gi~i~n~~~~--------~i-~~~~~~nV~i~~~~I~~~~~~~nt------DGidi~~s~nV~I~n~~ 134 (334)
......+++..++|+|+|.... .+ .....+.+.+.+|+|....|-.-. .+...+.......+||+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 3445678999999999998542 11 123478999999999985541100 11111122357899999
Q ss_pred EecCCCeeeecCCceeEEEEeEEEcC-C-----ceEEEeccCccCCCCcEEEEEEEeEEEecCCce-EEEe-eecCC---
Q 046362 135 IACGDDCVSIQTGCSNVHIHHISCGP-G-----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAG-VRIK-TWQGG--- 203 (334)
Q Consensus 135 i~~gDD~i~iksg~~nI~I~nc~~~~-~-----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~g-i~Ik-~~~g~--- 203 (334)
|...=|=| ++. -..+++||++.. . .|.-.-. . .....-.-..|.||++.....+ ..+. .|...
T Consensus 280 IeG~VDFI-FG~--g~AvFenC~I~s~~~~~~~~g~ITA~-~--t~~~~~~GfvF~nCrit~~g~~~~yLGRpW~~~s~~ 353 (422)
T PRK10531 280 IEGDVDFV-FGR--GAVVFDNTEFRVVNSRTQQEAYVFAP-A--TLPNIYYGFLAINSRFNASGDGVAQLGRAWDVDAGL 353 (422)
T ss_pred EeecccEE-ccC--ceEEEEcCEEEEecCCCCCceEEEec-C--CCCCCCCEEEEECCEEecCCCCCeeccCCCcccccc
Confidence 99876655 344 478999998863 1 1211111 0 1122344688999999874321 2222 22110
Q ss_pred ------cceEEeEEEEeEEEeCC
Q 046362 204 ------IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 204 ------~G~i~nI~f~ni~~~~~ 220 (334)
......|.|.+..|.+.
T Consensus 354 ~~y~~~~~~~arvV~~~s~i~~~ 376 (422)
T PRK10531 354 SAYVNGANTNGQVVIRDSAINEG 376 (422)
T ss_pred cccccccCCcceEEEEeCcccce
Confidence 11235688888888764
No 80
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=70.35 E-value=35 Score=35.19 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=63.7
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+..+.+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSF--RQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCC--ceEEEeeEEeeccceeecc-------
Confidence 457788888888876433222333333 356778888888877777665543 4577888887655566664
Q ss_pred CcEEEEEEEeEEEecCCc--e--EEEeeecCC--cceEEeEEEEeEEEeCC
Q 046362 176 ACVSDIVVEKISLQNTLA--G--VRIKTWQGG--IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~~~~--g--i~Ik~~~g~--~G~i~nI~f~ni~~~~~ 220 (334)
-...|+||++..... | -.|.. +++ ...-..+.|.|+++...
T Consensus 386 ---a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---AAVVFQACNIVSKMPMPGQFTVITA-QSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---ceEEEeccEEEEecCCCCCceEEEC-CCCCCCCCCCEEEEEeeEEecC
Confidence 145677777754211 1 12221 111 11224567888887643
No 81
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=70.14 E-value=87 Score=32.71 Aligned_cols=81 Identities=9% Similarity=0.200 Sum_probs=42.9
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. ......+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceeccc-------
Confidence 345666666666665322122233332 245666666666666666554442 3456666665544444543
Q ss_pred CcEEEEEEEeEEEe
Q 046362 176 ACVSDIVVEKISLQ 189 (334)
Q Consensus 176 ~~i~nI~~~ni~i~ 189 (334)
-...|+||.+.
T Consensus 429 ---a~avfq~C~i~ 439 (587)
T PLN02484 429 ---AAVVLQNCSIY 439 (587)
T ss_pred ---ceeEEeccEEE
Confidence 13456666664
No 82
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=69.43 E-value=42 Score=34.66 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=30.2
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
.+++..+|++|.|.......-.+-+. .+..+.+.+|.|....|-+-..++ .-.++||++.+.--+=+|
T Consensus 322 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 322 GDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFG 390 (548)
T ss_pred CCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceecc
Confidence 34555555555554221111222222 234555555555555555544432 235555555543334444
No 83
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=69.17 E-value=50 Score=34.55 Aligned_cols=81 Identities=7% Similarity=0.091 Sum_probs=42.1
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+..+.+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTH--RQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCC--cEEEEeeEEEeeccEEecc-------
Confidence 345666666666664321112223332 245666666666666665554432 3566666665544455543
Q ss_pred CcEEEEEEEeEEEe
Q 046362 176 ACVSDIVVEKISLQ 189 (334)
Q Consensus 176 ~~i~nI~~~ni~i~ 189 (334)
-...|+||.+.
T Consensus 441 ---a~avf~~C~i~ 451 (596)
T PLN02745 441 ---AAAIFQNCLIF 451 (596)
T ss_pred ---eeEEEEecEEE
Confidence 14456666664
No 84
>PLN02304 probable pectinesterase
Probab=68.46 E-value=65 Score=31.67 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=44.8
Q ss_pred ccCEEEEeEEEECCCCC-----CCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCc
Q 046362 98 SGGIKVKNIHISSPENS-----PNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGK 171 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~-----~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~ 171 (334)
.+++..+|++|.|.... ...-.+-+. ....+.+.+|.|....|-+-...+ .-.++||++.+.--+=+|.
T Consensus 161 a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~g--R~Yf~~CyIeG~VDFIFG~--- 235 (379)
T PLN02304 161 ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRG--RHYFKDCYIQGSIDFIFGD--- 235 (379)
T ss_pred CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCC--CEEEEeeEEcccccEEecc---
Confidence 45566666666664311 011123332 256677777777777676655443 4667777776555555654
Q ss_pred cCCCCcEEEEEEEeEEEec
Q 046362 172 DKSVACVSDIVVEKISLQN 190 (334)
Q Consensus 172 ~~~~~~i~nI~~~ni~i~~ 190 (334)
-...|+||++..
T Consensus 236 -------g~A~Fe~C~I~s 247 (379)
T PLN02304 236 -------ARSLYENCRLIS 247 (379)
T ss_pred -------ceEEEEccEEEE
Confidence 134566666654
No 85
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=68.00 E-value=46 Score=34.58 Aligned_cols=81 Identities=7% Similarity=0.096 Sum_probs=45.1
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+..+.+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC--ceEEEeeEEecccceeecc-------
Confidence 345677777777665322122233332 356667777777776666655542 3456677776554555553
Q ss_pred CcEEEEEEEeEEEe
Q 046362 176 ACVSDIVVEKISLQ 189 (334)
Q Consensus 176 ~~i~nI~~~ni~i~ 189 (334)
-.+.|+||.+.
T Consensus 414 ---a~avfq~c~i~ 424 (565)
T PLN02468 414 ---SAVVFQNCNIL 424 (565)
T ss_pred ---ceEEEeccEEE
Confidence 14556666664
No 86
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=67.77 E-value=1.3e+02 Score=31.32 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=84.8
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+++|...- .+- ....+...+.+|++....| -+-..+ ..-..+||+|...=|=| ++
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtvDFI-FG- 412 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD-----TLYAHA-QRQFYRECNIYGTVDFI-FG- 412 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----hhccCC-CceEEEeeEEeccccee-ec-
Confidence 34457899999999997542 122 2357899999999998543 222222 34578999999875644 33
Q ss_pred CceeEEEEeEEEcC-----C-ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCc-ceEEeEEEEeEEEe
Q 046362 147 GCSNVHIHHISCGP-----G-HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNVSFSSIQVW 218 (334)
Q Consensus 147 g~~nI~I~nc~~~~-----~-~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI~f~ni~~~ 218 (334)
.-..+++||.+.. + .+ |.- .|+ .+...-.-+.|.||++......-..++.=|+. ..-..+.|-+..|.
T Consensus 413 -~a~avfq~c~i~~~~~~~~~~~~iTA--~~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~ 488 (565)
T PLN02468 413 -NSAVVFQNCNILPRRPMKGQQNTITA--QGR-TDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMG 488 (565)
T ss_pred -cceEEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEEEecccC
Confidence 3579999999852 1 12 222 111 12234457999999998764322223332321 23456777777777
Q ss_pred CC
Q 046362 219 DV 220 (334)
Q Consensus 219 ~~ 220 (334)
+.
T Consensus 489 ~~ 490 (565)
T PLN02468 489 SL 490 (565)
T ss_pred Ce
Confidence 64
No 87
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=67.62 E-value=53 Score=33.89 Aligned_cols=82 Identities=7% Similarity=0.089 Sum_probs=42.0
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec-------
Confidence 345666666666664322222233332 245566666666666665554442 3456666665444455553
Q ss_pred CcEEEEEEEeEEEec
Q 046362 176 ACVSDIVVEKISLQN 190 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~ 190 (334)
-...|+||.+.-
T Consensus 382 ---a~avfq~c~i~~ 393 (538)
T PLN03043 382 ---AAAIFQNCNLYA 393 (538)
T ss_pred ---ceeeeeccEEEE
Confidence 134566666643
No 88
>PLN02176 putative pectinesterase
Probab=67.26 E-value=1.3e+02 Score=29.27 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=81.9
Q ss_pred EeEecEEEEeEEEEcCCC----------Cce-EEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCe
Q 046362 73 YASYNVTVRDIKINNSPL----------CHL-KFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDC 141 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~----------~~i-~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~ 141 (334)
...+++..++|+++|... -.+ .....+...+.+|++....| -+-.. .-.-..+||+|...=|=
T Consensus 119 v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD-----TLy~~-~gRqyf~~CyIeG~VDF 192 (340)
T PLN02176 119 SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD-----TLFDG-KGRHYYKRCVISGGIDF 192 (340)
T ss_pred EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc-----eeEeC-CcCEEEEecEEEecccE
Confidence 357899999999999742 122 22346889999999997543 23222 23578999999987665
Q ss_pred eeecCCceeEEEEeEEEcCC---------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCc-ceEEeE
Q 046362 142 VSIQTGCSNVHIHHISCGPG---------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNV 210 (334)
Q Consensus 142 i~iksg~~nI~I~nc~~~~~---------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI 210 (334)
| .+. -..+++||++..- .| |.-- ++ .+...-.-..|.||++.+.. -..+ |+. +.-..+
T Consensus 193 I-FG~--a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~--~r-~~~~~~~GfvF~~C~itg~g-~~yL----GRPW~~yarv 261 (340)
T PLN02176 193 I-FGY--AQSIFEGCTLKLTLGIYPPNEPYGTITAQ--GR-PSPSDKGGFVFKDCTVTGVG-KALL----GRAWGSYARV 261 (340)
T ss_pred E-ecC--ceEEEeccEEEEecccCCCCCCcEEEEeC--CC-CCCCCCcEEEEECCEEccCc-ceee----ecCCCCCceE
Confidence 5 343 4799999998621 12 2211 11 11223347889999997642 1222 221 245678
Q ss_pred EEEeEEEeCC
Q 046362 211 SFSSIQVWDV 220 (334)
Q Consensus 211 ~f~ni~~~~~ 220 (334)
.|.|..|.+.
T Consensus 262 Vf~~t~m~~~ 271 (340)
T PLN02176 262 IFYRSRFSDV 271 (340)
T ss_pred EEEecCcCCe
Confidence 8888888764
No 89
>PLN02304 probable pectinesterase
Probab=66.31 E-value=1.4e+02 Score=29.43 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=81.4
Q ss_pred EEeEecEEEEeEEEEcCCCC---------ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCe
Q 046362 72 FYASYNVTVRDIKINNSPLC---------HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDC 141 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~---------~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~ 141 (334)
....+++..++|+++|.... .+- ....+...+.+|.+....| -+-.. .-.-..+||+|...=|=
T Consensus 158 ~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QD-----TLy~~-~gR~Yf~~CyIeG~VDF 231 (379)
T PLN02304 158 QVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQD-----TLHDD-RGRHYFKDCYIQGSIDF 231 (379)
T ss_pred EEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccc-----eeEeC-CCCEEEEeeEEcccccE
Confidence 34468999999999997421 222 2347899999999998543 23222 23578999999987665
Q ss_pred eeecCCceeEEEEeEEEcC-C----------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEE
Q 046362 142 VSIQTGCSNVHIHHISCGP-G----------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVK 208 (334)
Q Consensus 142 i~iksg~~nI~I~nc~~~~-~----------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~ 208 (334)
| .+. -..+++||.+.. . .| |.-- ++ .+...-.-..|.||++.+.. -+.+. .| ..-.
T Consensus 232 I-FG~--g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~--~R-t~~~~~~GfvF~~C~itg~g-~vyLGRPW----~pys 300 (379)
T PLN02304 232 I-FGD--ARSLYENCRLISMANPVPPGSKSINGAVTAH--GR-TSKDENTGFSFVNCTIGGTG-RIWLGRAW----RPYS 300 (379)
T ss_pred E-ecc--ceEEEEccEEEEecCCcccccccCceEEEec--CC-CCCCCCceEEEECCEEccCc-ceeecCCC----CCcc
Confidence 4 444 478999998863 1 12 2111 11 11233456779999987642 12222 12 2356
Q ss_pred eEEEEeEEEeCC
Q 046362 209 NVSFSSIQVWDV 220 (334)
Q Consensus 209 nI~f~ni~~~~~ 220 (334)
.+.|.+..|.+.
T Consensus 301 rvVf~~t~m~~~ 312 (379)
T PLN02304 301 RVVFAYTSMTDI 312 (379)
T ss_pred eEEEEecccCCE
Confidence 778888887764
No 90
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=66.03 E-value=1.9e+02 Score=30.81 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=84.9
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+|+|...- .+-+ ...+...+.+|+|....| -+-.. ...-..+||+|...=|-| ++
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG- 404 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD-----TLYAH-SHRQFYRDCTISGTIDFL-FG- 404 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc-----hhccC-CCcEEEEeCEEEEeccEE-ec-
Confidence 34567899999999997541 2222 347899999999987543 22222 234688999998875544 34
Q ss_pred CceeEEEEeEEEcCC-----ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEE----EeeecCCc-ceEEeEEEEeEE
Q 046362 147 GCSNVHIHHISCGPG-----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVR----IKTWQGGI-GSVKNVSFSSIQ 216 (334)
Q Consensus 147 g~~nI~I~nc~~~~~-----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~----Ik~~~g~~-G~i~nI~f~ni~ 216 (334)
.-..+++||.+..- ..-.|=-.|+ .+...-.-+.|.||++......+. .+++=|+. ..-..+.|-+..
T Consensus 405 -~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~ 482 (670)
T PLN02217 405 -DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTF 482 (670)
T ss_pred -CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecc
Confidence 34799999998631 1112211221 122334579999999987642111 12222321 345778888888
Q ss_pred EeCC
Q 046362 217 VWDV 220 (334)
Q Consensus 217 ~~~~ 220 (334)
|.+.
T Consensus 483 l~~~ 486 (670)
T PLN02217 483 IPDF 486 (670)
T ss_pred cCCe
Confidence 8764
No 91
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=66.02 E-value=1.4e+02 Score=30.60 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=6.8
Q ss_pred ecEEEEeEEEEcC
Q 046362 76 YNVTVRDIKINNS 88 (334)
Q Consensus 76 ~nv~i~gi~i~n~ 88 (334)
+++..++|+++|.
T Consensus 270 ~~F~a~nitf~Nt 282 (497)
T PLN02698 270 DGFIARDIGFKNA 282 (497)
T ss_pred CCeEEEeeEEEEC
Confidence 4455555555554
No 92
>PLN02197 pectinesterase
Probab=66.01 E-value=51 Score=34.37 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=60.0
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 432 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK------- 432 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc-------
Confidence 456677777777775322222333333 356677777777777776665543 3467777776554455553
Q ss_pred CcEEEEEEEeEEEecCC--ce--EEEeeecCCc---ceEEeEEEEeEEEeCC
Q 046362 176 ACVSDIVVEKISLQNTL--AG--VRIKTWQGGI---GSVKNVSFSSIQVWDV 220 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~~~--~g--i~Ik~~~g~~---G~i~nI~f~ni~~~~~ 220 (334)
....|+||++.-.. .| -.|.. +++. ..-..+.|.|+++...
T Consensus 433 ---a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 433 ---SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred ---eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecC
Confidence 12567777765321 11 12222 2221 1234567777777653
No 93
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=65.93 E-value=65 Score=32.95 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=39.3
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCCC
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVA 176 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~~ 176 (334)
.+++..+|++|.|.........+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 283 g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~--RqyyrdC~I~GtVDFIFG~-------- 352 (509)
T PLN02488 283 GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRD--RQFYRECFITGTVDFICGN-------- 352 (509)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCC--CEEEEeeEEeeccceEecc--------
Confidence 34555566666554321122233332 245556666666655555544432 3455666665444444443
Q ss_pred cEEEEEEEeEEEec
Q 046362 177 CVSDIVVEKISLQN 190 (334)
Q Consensus 177 ~i~nI~~~ni~i~~ 190 (334)
-.+.|+||++..
T Consensus 353 --a~avFq~C~I~s 364 (509)
T PLN02488 353 --AAAVFQFCQIVA 364 (509)
T ss_pred --eEEEEEccEEEE
Confidence 144566666543
No 94
>PLN02671 pectinesterase
Probab=65.28 E-value=1.4e+02 Score=29.15 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=82.9
Q ss_pred EEEeEecEEEEeEEEEcCCC----------CceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCC
Q 046362 71 RFYASYNVTVRDIKINNSPL----------CHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDD 140 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~----------~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD 140 (334)
.....+++..++|+++|... -.+.+ ..+.+.+.+|++....| -+-.. .-.-..+||+|...=|
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~CyIeG~VD 221 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQD-----TLLDE-TGSHYFYQCYIQGSVD 221 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEecccc-----ccEeC-CCcEEEEecEEEEecc
Confidence 44556889999999999832 12333 36899999999998543 22222 2346899999998766
Q ss_pred eeeecCCceeEEEEeEEEcC---Cce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEEeEEEEeE
Q 046362 141 CVSIQTGCSNVHIHHISCGP---GHG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVKNVSFSSI 215 (334)
Q Consensus 141 ~i~iksg~~nI~I~nc~~~~---~~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~nI~f~ni 215 (334)
=| .+. -...++||++.. ..| |.--+ + .+...-.-..|.||++.+.. ...+. .| +.-..+.|.|.
T Consensus 222 FI-FG~--g~A~Fe~C~I~s~~~~~G~ITA~~--r-~~~~~~~GfvF~~C~itg~g-~vyLGRPW----~~yarvVf~~t 290 (359)
T PLN02671 222 FI-FGN--AKSLYQDCVIQSTAKRSGAIAAHH--R-DSPTEDTGFSFVNCVINGTG-KIYLGRAW----GNYSRTVYSNC 290 (359)
T ss_pred EE-ecc--eeEEEeccEEEEecCCCeEEEeec--c-CCCCCCccEEEEccEEccCc-cEEEeCCC----CCCceEEEEec
Confidence 55 344 479999999863 223 22211 1 11222356789999997642 22232 22 23467888888
Q ss_pred EEeCC
Q 046362 216 QVWDV 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
.|.+.
T Consensus 291 ~m~~~ 295 (359)
T PLN02671 291 FIADI 295 (359)
T ss_pred ccCCe
Confidence 88764
No 95
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=64.88 E-value=43 Score=35.42 Aligned_cols=111 Identities=8% Similarity=0.080 Sum_probs=66.9
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. ......+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSH--RQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCC--cEEEEeCEEEEeccEEecC-------
Confidence 356777888888876432223334443 357778888888877777765543 4577888887655566663
Q ss_pred CcEEEEEEEeEEEecCC----ceEEEeeecCC--cceEEeEEEEeEEEeCC
Q 046362 176 ACVSDIVVEKISLQNTL----AGVRIKTWQGG--IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~~~----~gi~Ik~~~g~--~G~i~nI~f~ni~~~~~ 220 (334)
-...|+||++.... ..-.|... ++ ...-..+.|.|+++...
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAq-gr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAH-GRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecC-CCCCCCCCceEEEEeeEEecC
Confidence 24678888886421 11233322 22 12334678999998864
No 96
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=63.96 E-value=61 Score=33.74 Aligned_cols=80 Identities=10% Similarity=0.194 Sum_probs=42.4
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCCC
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVA 176 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~~ 176 (334)
.+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 346 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 415 (572)
T PLN02990 346 GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSH--RQFFRDCTVSGTVDFIFGD-------- 415 (572)
T ss_pred cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCC--cEEEEeeEEecccceEccC--------
Confidence 45666666666665322222233332 245666666666666666554442 3455666666544455553
Q ss_pred cEEEEEEEeEEEe
Q 046362 177 CVSDIVVEKISLQ 189 (334)
Q Consensus 177 ~i~nI~~~ni~i~ 189 (334)
-...|+||++.
T Consensus 416 --a~avf~~C~i~ 426 (572)
T PLN02990 416 --AKVVLQNCNIV 426 (572)
T ss_pred --ceEEEEccEEE
Confidence 13456666664
No 97
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=63.49 E-value=1.6e+02 Score=30.21 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred EecccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccC
Q 046362 95 FDSSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDK 173 (334)
Q Consensus 95 ~~~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~ 173 (334)
....+++..+|++|.|.......-.+-+. ....+.+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.-
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~a---- 339 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGNA---- 339 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEeccc----
Confidence 34467899999999997532223344443 368899999999998888877664 35889999986666777741
Q ss_pred CCCcEEEEEEEeEEEecCCc--e--EEEeeecCC--cceEEeEEEEeEEEeCC
Q 046362 174 SVACVSDIVVEKISLQNTLA--G--VRIKTWQGG--IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 174 ~~~~i~nI~~~ni~i~~~~~--g--i~Ik~~~g~--~G~i~nI~f~ni~~~~~ 220 (334)
...|+||++..... + -.|... ++ ...-..+.|.|+++...
T Consensus 340 ------~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 340 ------AAVFQNCYLFLRRPHGKSYNVILAN-GRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred ------ceeecccEEEEecCCCCCceEEEec-CCCCCCCCceEEEEeeEEecC
Confidence 35788888864321 1 122221 21 12235677888888764
No 98
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=62.59 E-value=1.9e+02 Score=29.79 Aligned_cols=139 Identities=11% Similarity=0.048 Sum_probs=84.0
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|++.|.... .+-+ ...+...+.+|.+....| -+-..+ ..-..++|+|...=|=| ++
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~IeGtVDFI-FG- 372 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD-----TLYVHS-AKQFYRECDIYGTIDFI-FG- 372 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----ccccCC-CceEEEeeEEeccccee-cc-
Confidence 45567899999999997542 2222 347899999999998543 222222 24589999999875544 34
Q ss_pred CceeEEEEeEEEcCC-----ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEE----EeeecCCc-ceEEeEEEEeEE
Q 046362 147 GCSNVHIHHISCGPG-----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVR----IKTWQGGI-GSVKNVSFSSIQ 216 (334)
Q Consensus 147 g~~nI~I~nc~~~~~-----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~----Ik~~~g~~-G~i~nI~f~ni~ 216 (334)
.-..+++||.+..- ..-.|=..++ .....-.-+.|.||++........ .++.=|+. +.-..+.|.+..
T Consensus 373 -~a~avFq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~ 450 (530)
T PLN02933 373 -NAAVVFQNCSLYARKPNPNHKIAFTAQSR-NQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSF 450 (530)
T ss_pred -CceEEEeccEEEEeccCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceEeccCCCCCceEEEEecc
Confidence 34689999988521 1111211111 122334578999999987532111 12222321 345678888888
Q ss_pred EeCC
Q 046362 217 VWDV 220 (334)
Q Consensus 217 ~~~~ 220 (334)
|.+.
T Consensus 451 l~~~ 454 (530)
T PLN02933 451 IDDL 454 (530)
T ss_pred cCCe
Confidence 8764
No 99
>PLN02314 pectinesterase
Probab=62.53 E-value=62 Score=33.77 Aligned_cols=81 Identities=7% Similarity=0.158 Sum_probs=43.4
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. ......+.+|.|....|-+-..++ .-.++||++.+.--+=+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC-------
Confidence 445666677776665322122233332 345666677777666666655443 3466666666544455553
Q ss_pred CcEEEEEEEeEEEe
Q 046362 176 ACVSDIVVEKISLQ 189 (334)
Q Consensus 176 ~~i~nI~~~ni~i~ 189 (334)
-...|+||.+.
T Consensus 434 ---a~avf~~c~i~ 444 (586)
T PLN02314 434 ---AAVVFQNCNIQ 444 (586)
T ss_pred ---ceeeeeccEEE
Confidence 13456666664
No 100
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=62.14 E-value=2.1e+02 Score=29.99 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=61.0
Q ss_pred EeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCC
Q 046362 73 YASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTG 147 (334)
Q Consensus 73 ~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg 147 (334)
...+++..++|+++|.... .+-+ ...+...+.+|.|....| -+-.. +..-..+||+|...=|=| ++
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD-----TLy~~-~~rq~y~~c~I~GtvDFI-FG-- 429 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD-----TLYVH-SNRQFFVKCHITGTVDFI-FG-- 429 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc-----hhccC-CCcEEEEeeEEeecccee-cc--
Confidence 4457888888998887542 2211 246777888888876433 22222 223477888887765544 23
Q ss_pred ceeEEEEeEEEcC---Cce--EEEeccCccCCCCcEEEEEEEeEEEecCC
Q 046362 148 CSNVHIHHISCGP---GHG--ISLGGLGKDKSVACVSDIVVEKISLQNTL 192 (334)
Q Consensus 148 ~~nI~I~nc~~~~---~~g--i~IGS~g~~~~~~~i~nI~~~ni~i~~~~ 192 (334)
.-..+++||.+.. ..| -.|=..|+. +...-.-+.|.||++....
T Consensus 430 ~a~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 430 NAAAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ceeEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecEEecCC
Confidence 3467788887752 111 111111211 2233456778888887643
No 101
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=61.68 E-value=2e+02 Score=29.67 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=83.3
Q ss_pred EEEeEecEEEEeEEEEcCCCC----ce-EEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 71 RFYASYNVTVRDIKINNSPLC----HL-KFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~----~i-~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
.....+++..++|+++|.... .+ .....+...+.+|++....| -+-..+ ..-..++|+|...=|=| .+
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG 380 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD-----SLYTHS-KRQFYRETDITGTVDFI-FG 380 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC-----cceeCC-CCEEEEeeEEcccccee-cc
Confidence 445568999999999998532 22 22347889999999998543 233222 34578999999875654 33
Q ss_pred CCceeEEEEeEEEcCC----ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCc-ceEEeEEEEeEEEeCC
Q 046362 146 TGCSNVHIHHISCGPG----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNVSFSSIQVWDV 220 (334)
Q Consensus 146 sg~~nI~I~nc~~~~~----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI~f~ni~~~~~ 220 (334)
.-..+++||.+..- ..-.|=-.++ .+...-.-+.|.||++.... ...+ |+. +.-..+.|.+..|.+.
T Consensus 381 --~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~C~it~~~-~~yL----GRPW~~ysrvVf~~t~l~~~ 452 (529)
T PLN02170 381 --NSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHNCRITAES-MTYL----GRPWKEYSRTVVMQSFIDGS 452 (529)
T ss_pred --cceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEeeEEecCC-ceee----eCCCCCCceEEEEecccCCe
Confidence 35799999988531 1111211111 12233457899999998753 1222 221 2356777888777764
No 102
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=61.61 E-value=65 Score=33.28 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=34.7
Q ss_pred ccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEe
Q 046362 98 SGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLG 167 (334)
Q Consensus 98 ~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IG 167 (334)
.+++..+|++|.|.........+-+. .+....+.+|.|....|-+-..++ .-.++||++.+.--+=+|
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 379 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFG 379 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEec
Confidence 45566666666664321122233332 245566666666666555544432 346666666544445554
No 103
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=60.98 E-value=1e+02 Score=27.27 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=8.1
Q ss_pred CceeEEEEeEEEcCC
Q 046362 147 GCSNVHIHHISCGPG 161 (334)
Q Consensus 147 g~~nI~I~nc~~~~~ 161 (334)
|..|.+|+|.+|.+.
T Consensus 62 GF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 62 GFYNTLIENNVFDGV 76 (198)
T ss_pred cccccEEEeeeeccc
Confidence 345555555555543
No 104
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=60.71 E-value=73 Score=33.26 Aligned_cols=111 Identities=7% Similarity=0.135 Sum_probs=60.1
Q ss_pred cccCEEEEeEEEECCCCCCCCCceeEe-CeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCCC
Q 046362 97 SSGGIKVKNIHISSPENSPNTDGIHLQ-NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSV 175 (334)
Q Consensus 97 ~~~nV~i~~~~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~~ 175 (334)
..+++..+|++|.|.......-.+-+. .+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc-------
Confidence 356677777777775432222233332 356677777777777676655543 3467777776554555553
Q ss_pred CcEEEEEEEeEEEecCCc--e--EEEeeecCC--cceEEeEEEEeEEEeCC
Q 046362 176 ACVSDIVVEKISLQNTLA--G--VRIKTWQGG--IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 176 ~~i~nI~~~ni~i~~~~~--g--i~Ik~~~g~--~G~i~nI~f~ni~~~~~ 220 (334)
-.+.|+||.+.-... + -.|... ++ ...-..+.|.|+++...
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iTAq-gr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVTAQ-GRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEEec-CCCCCCCCceEEEEecEEecC
Confidence 245677777764211 1 122221 21 11234567777777653
No 105
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=60.10 E-value=2.2e+02 Score=29.52 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=83.6
Q ss_pred EEEeEecEEEEeEEEEcCCCC------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeee
Q 046362 71 RFYASYNVTVRDIKINNSPLC------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSI 144 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~i 144 (334)
.....+++..++|+++|.... .+.+ ..+.+.+.+|++....| -+-..+ ..-..+||+|...=|=| +
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QD-----TLy~~~-~rqyy~~C~I~GtVDFI-F 385 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQD-----TLYAHS-LRQFYRECEIYGTIDFI-F 385 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccc-----cceecC-CceEEEeeEEecccceE-c
Confidence 345678999999999998532 2333 47899999999988543 222222 34689999999875654 4
Q ss_pred cCCceeEEEEeEEEcCC-----ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCc-ceEEeEEEEeEEEe
Q 046362 145 QTGCSNVHIHHISCGPG-----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNVSFSSIQVW 218 (334)
Q Consensus 145 ksg~~nI~I~nc~~~~~-----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI~f~ni~~~ 218 (334)
+. -..+++||.+..- ..-.|=-.++. +...-..+.|.||++.... ..++ |+. +.-..+.|-+..|.
T Consensus 386 G~--a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~-~~yL----GRPW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 386 GN--GAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLATQ-PTYL----GRPWKQYSRTVFMNTYMS 457 (537)
T ss_pred cC--ceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEEccCC-ceEE----ecCCCCCceEEEEecCCC
Confidence 43 4799999998631 11112111211 2233457889999987642 2222 221 24567777777777
Q ss_pred CC
Q 046362 219 DV 220 (334)
Q Consensus 219 ~~ 220 (334)
+.
T Consensus 458 ~~ 459 (537)
T PLN02506 458 QL 459 (537)
T ss_pred Ce
Confidence 64
No 106
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=56.13 E-value=2.3e+02 Score=29.34 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=84.2
Q ss_pred EEEeEecEEEEeEEEEcCCCC----ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 71 RFYASYNVTVRDIKINNSPLC----HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~----~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
.....+++..++|+++|.... .+- -..++...+.+|+|....| -+-..+ ..-..+||+|...=|=| ++
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG 390 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD-----TLYAHS-LRQFYRDSYITGTVDFI-FG 390 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceecC-CcEEEEeeEEEecccee-cc
Confidence 344568899999999997542 222 2347899999999998543 232222 34589999999876654 33
Q ss_pred CCceeEEEEeEEEcCC------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEE
Q 046362 146 TGCSNVHIHHISCGPG------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFS 213 (334)
Q Consensus 146 sg~~nI~I~nc~~~~~------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ 213 (334)
.-..+++||.+..- .+ |.- .|+ .+...-.-+.|.||++....... ..++.=|+. ..-..+.|-
T Consensus 391 --~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~ 465 (548)
T PLN02301 391 --NAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVM 465 (548)
T ss_pred --cceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEeeEEecCccccccccccceeeecCCCCCceEEEE
Confidence 35799999988531 12 222 121 12334557899999998753211 112222321 245667777
Q ss_pred eEEEeCC
Q 046362 214 SIQVWDV 220 (334)
Q Consensus 214 ni~~~~~ 220 (334)
+..|.+.
T Consensus 466 ~s~l~~~ 472 (548)
T PLN02301 466 QSYIDDH 472 (548)
T ss_pred ecccCCe
Confidence 7777664
No 107
>PLN02314 pectinesterase
Probab=53.71 E-value=2.9e+02 Score=28.96 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=84.6
Q ss_pred EEeEecEEEEeEEEEcCCCC----ce-EEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HL-KFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i-~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|++.|...- .+ .-...+...+.+|++....| -+-..+ ..-..+||+|...=|-| ++
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtvDFI-FG- 432 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD-----TLYAHS-NRQFYRDCDITGTIDFI-FG- 432 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc-----hheeCC-CCEEEEeeEEEecccee-cc-
Confidence 34568899999999997532 12 22347889999999998543 232222 34688999999875654 34
Q ss_pred CceeEEEEeEEEcCC------ceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCc-ceEEeEEEEeEEEeC
Q 046362 147 GCSNVHIHHISCGPG------HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGI-GSVKNVSFSSIQVWD 219 (334)
Q Consensus 147 g~~nI~I~nc~~~~~------~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~-G~i~nI~f~ni~~~~ 219 (334)
.-..+++||.+..- .+ .|=..++ .+...-.-+.|.||++..... +..++.=|+. ..-..+.|-+..|.+
T Consensus 433 -~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 433 -NAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGS 508 (586)
T ss_pred -CceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEEEEecccCC
Confidence 35799999998631 12 1211121 123345678999999987642 2223332321 234567777777776
Q ss_pred C
Q 046362 220 V 220 (334)
Q Consensus 220 ~ 220 (334)
.
T Consensus 509 ~ 509 (586)
T PLN02314 509 F 509 (586)
T ss_pred c
Confidence 5
No 108
>PLN02432 putative pectinesterase
Probab=53.70 E-value=2e+02 Score=27.24 Aligned_cols=131 Identities=14% Similarity=0.078 Sum_probs=82.6
Q ss_pred EEeEecEEEEeEEEEcCCC-----CceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPL-----CHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~-----~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++.+++|+++|... -.+.+ ..+...+.+|.+....| -+-.. .-.-..+||+|...=|=| .+.
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v-~gDr~~f~~c~~~G~QD-----TLy~~-~gr~yf~~c~I~G~VDFI-FG~ 161 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRV-AGDRAAFYGCRILSYQD-----TLLDD-TGRHYYRNCYIEGATDFI-CGN 161 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEE-cCCcEEEEcceEecccc-----eeEEC-CCCEEEEeCEEEecccEE-ecC
Confidence 4456899999999999743 12333 46889999999997543 23222 235689999999876655 444
Q ss_pred CceeEEEEeEEEcC---Cce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCC-cceEEeEEEEeEEEeCC
Q 046362 147 GCSNVHIHHISCGP---GHG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGG-IGSVKNVSFSSIQVWDV 220 (334)
Q Consensus 147 g~~nI~I~nc~~~~---~~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~-~G~i~nI~f~ni~~~~~ 220 (334)
-...+++|++.. ..| |.--+ + .+...-.-..|.||++.+.. ...+ |+ -+.-..+.|.|..|.+.
T Consensus 162 --g~a~Fe~c~i~s~~~~~g~itA~~--r-~~~~~~~Gfvf~~c~itg~g-~~yL----GRpW~~~srvvf~~t~l~~~ 230 (293)
T PLN02432 162 --AASLFEKCHLHSLSPNNGAITAQQ--R-TSASENTGFTFLGCKLTGAG-TTYL----GRPWGPYSRVVFALSYMSSV 230 (293)
T ss_pred --ceEEEEeeEEEEecCCCCeEEecC--C-CCCCCCceEEEEeeEEcccc-hhhc----cCCCCCccEEEEEecccCCe
Confidence 469999999863 234 32211 1 11222346899999997532 1112 22 12456788888888764
No 109
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=53.39 E-value=2.9e+02 Score=28.93 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=85.4
Q ss_pred EEEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 71 RFYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
.....+++..++|++.|...- .+-+ ...+...+.+|.+....| -+-.. +..-..+||+|...=|=| ++
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG 427 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD-----TLYVH-SNRQFFRECDIYGTVDFI-FG 427 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc-----ccccC-CCcEEEEecEEEecccee-cc
Confidence 345568899999999997531 2222 347899999999998543 22222 234588999999875544 33
Q ss_pred CCceeEEEEeEEEcCC------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEE
Q 046362 146 TGCSNVHIHHISCGPG------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFS 213 (334)
Q Consensus 146 sg~~nI~I~nc~~~~~------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ 213 (334)
.-..+++||.+..- .| |.- .++ .+...-.-+.|.||++.....-. ..++.=|+. +.-..+.|-
T Consensus 428 --~a~avfq~C~i~~~~~~~~~~~~ITA--q~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~ 502 (587)
T PLN02484 428 --NAAVVLQNCSIYARKPMAQQKNTITA--QNR-KDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLYSRTVYM 502 (587)
T ss_pred --cceeEEeccEEEEecCCCCCceEEEe--cCC-CCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCCCceEEEE
Confidence 45799999998631 12 222 111 12234468999999998753210 122222331 345778888
Q ss_pred eEEEeCC
Q 046362 214 SIQVWDV 220 (334)
Q Consensus 214 ni~~~~~ 220 (334)
+..|.+.
T Consensus 503 ~s~i~~~ 509 (587)
T PLN02484 503 MSYMGDH 509 (587)
T ss_pred ecccCCe
Confidence 8888765
No 110
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=50.05 E-value=3.1e+02 Score=28.28 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=84.7
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+++|...- .+-+ ...+...+.+|.+....| -+-... ..-..+||+|...=|=| .+.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 361 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD-----TLYTHT-MRQFYRECRITGTVDFI-FGD 361 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC-----eeEeCC-CCEEEEeeEEeecccEE-ecC
Confidence 45568899999999997531 2222 347899999999998543 333333 33578999999876654 343
Q ss_pred CceeEEEEeEEEcCC------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEE----EeeecCCc-ceEEeEEEEe
Q 046362 147 GCSNVHIHHISCGPG------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVR----IKTWQGGI-GSVKNVSFSS 214 (334)
Q Consensus 147 g~~nI~I~nc~~~~~------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~----Ik~~~g~~-G~i~nI~f~n 214 (334)
-..+++||.+..- .| |.-- ++ .+...-....|.||++........ .++.=|+. +.-..+.|-+
T Consensus 362 --a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~ 436 (520)
T PLN02201 362 --ATAVFQNCQILAKKGLPNQKNTITAQ--GR-KDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQ 436 (520)
T ss_pred --ceEEEEccEEEEecCCCCCCceEEec--CC-CCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEe
Confidence 4799999988631 12 2221 11 122334578999999987532111 11221321 3467788888
Q ss_pred EEEeCC
Q 046362 215 IQVWDV 220 (334)
Q Consensus 215 i~~~~~ 220 (334)
..|.++
T Consensus 437 t~l~~~ 442 (520)
T PLN02201 437 NYMSDA 442 (520)
T ss_pred cCcCCe
Confidence 888765
No 111
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=49.89 E-value=3.3e+02 Score=28.58 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=84.9
Q ss_pred EEeEecEEEEeEEEEcCCCC------ceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 72 FYASYNVTVRDIKINNSPLC------HLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~------~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
....+++..++|+++|...- .+. ..++...+.+|+|....| -+-.. ...-..+||+|...=|=| ++
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~-v~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG 439 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIR-VQSDRSIFLNCRFEGYQD-----TLYAQ-THRQFYRSCVITGTIDFI-FG 439 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEE-EcCCcEEEEeeEEeeccc-----ccccC-CCcEEEEeeEEEeeccEE-ec
Confidence 34678999999999996431 233 347899999999998543 22222 234689999999876644 34
Q ss_pred CCceeEEEEeEEEcCC------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEE----EeeecCCc-ceEEeEEEE
Q 046362 146 TGCSNVHIHHISCGPG------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVR----IKTWQGGI-GSVKNVSFS 213 (334)
Q Consensus 146 sg~~nI~I~nc~~~~~------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~----Ik~~~g~~-G~i~nI~f~ 213 (334)
.-..+++||.+..- .| |.-- ++ .+...-.-+.|.||++........ .++.=|+. +.-..+.|-
T Consensus 440 --~a~avf~~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~ 514 (596)
T PLN02745 440 --DAAAIFQNCLIFVRKPLPNQQNTVTAQ--GR-VDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVM 514 (596)
T ss_pred --ceeEEEEecEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEeeEEecCccccccccccceeccCCCCCCccEEEE
Confidence 35799999998531 12 2221 11 122334678999999987532111 12222321 345677788
Q ss_pred eEEEeCC
Q 046362 214 SIQVWDV 220 (334)
Q Consensus 214 ni~~~~~ 220 (334)
+..|.+.
T Consensus 515 ~s~l~~~ 521 (596)
T PLN02745 515 ESTIEDV 521 (596)
T ss_pred ecccCCe
Confidence 7777764
No 112
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=49.43 E-value=3.2e+02 Score=28.28 Aligned_cols=138 Identities=7% Similarity=0.020 Sum_probs=84.8
Q ss_pred EEEeEecEEEEeEEEEcCCCC----ce-EEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeec
Q 046362 71 RFYASYNVTVRDIKINNSPLC----HL-KFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQ 145 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~----~i-~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~ik 145 (334)
.....+++..++|+|+|.... .+ .....+...+.+|+|....| -+-.. +..-..+||+|...=|=| ++
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQD-----TLy~~-~~rq~y~~c~I~GtVDFI-FG 380 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQD-----TLYVH-SLRQFYRECDIYGTVDFI-FG 380 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCc-----ccccC-CCcEEEEeeEEeeccceE-ee
Confidence 344558999999999997542 22 22347889999999998543 22222 234688999999876654 34
Q ss_pred CCceeEEEEeEEEcC-----C-ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEE
Q 046362 146 TGCSNVHIHHISCGP-----G-HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFS 213 (334)
Q Consensus 146 sg~~nI~I~nc~~~~-----~-~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~ 213 (334)
.-..+++||.+.. + .+ |.-- |+ .+...-.-+.|.||++.....-. ..++.=|+. ..-..+.|-
T Consensus 381 --~a~avfq~c~i~~r~~~~~~~~~iTA~--~r-~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~ 455 (538)
T PLN03043 381 --NAAAIFQNCNLYARKPMANQKNAFTAQ--GR-TDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYM 455 (538)
T ss_pred --cceeeeeccEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEecEEecCCcccccccccceeccCCCCCCceEEEE
Confidence 3579999999853 1 12 3321 21 12233457899999998753211 112222332 235677777
Q ss_pred eEEEeCC
Q 046362 214 SIQVWDV 220 (334)
Q Consensus 214 ni~~~~~ 220 (334)
+..|.+.
T Consensus 456 ~s~i~~~ 462 (538)
T PLN03043 456 QSYIGDL 462 (538)
T ss_pred ecccCCe
Confidence 7777764
No 113
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=47.25 E-value=3.6e+02 Score=28.19 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=83.8
Q ss_pred EEeEecEEEEeEEEEcCCCC----ceEE-ecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecC
Q 046362 72 FYASYNVTVRDIKINNSPLC----HLKF-DSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQT 146 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~----~i~~-~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks 146 (334)
....+++..++|+++|.... .+-+ ...+...+.+|.|....| -+-.. +..-..++|+|...=|=| ++.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG~ 415 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD-----TLYVH-SHRQFFRDCTVSGTVDFI-FGD 415 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc-----hhccC-CCcEEEEeeEEecccceE-ccC
Confidence 34567899999999998642 2222 347889999999998543 22222 234678999999876654 343
Q ss_pred CceeEEEEeEEEcC---Cce--EEEeccCccCCCCcEEEEEEEeEEEecCCceEE----EeeecCCc-ceEEeEEEEeEE
Q 046362 147 GCSNVHIHHISCGP---GHG--ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVR----IKTWQGGI-GSVKNVSFSSIQ 216 (334)
Q Consensus 147 g~~nI~I~nc~~~~---~~g--i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~----Ik~~~g~~-G~i~nI~f~ni~ 216 (334)
-..+++||.+.. ..| -.|=-.++ .+...-.-+.|.||++........ .+++=|+. ..-..+.|.+..
T Consensus 416 --a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~ 492 (572)
T PLN02990 416 --AKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTT 492 (572)
T ss_pred --ceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecc
Confidence 479999999852 111 12211111 112234578999999987642111 12222321 235677788887
Q ss_pred EeCC
Q 046362 217 VWDV 220 (334)
Q Consensus 217 ~~~~ 220 (334)
|.+.
T Consensus 493 i~~~ 496 (572)
T PLN02990 493 IDDV 496 (572)
T ss_pred cCCe
Confidence 7764
No 114
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=46.97 E-value=2.2e+02 Score=27.76 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=32.7
Q ss_pred CceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEec-CCCeeeecCCceeEEEEeEEEcCCce
Q 046362 91 CHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIAC-GDDCVSIQTGCSNVHIHHISCGPGHG 163 (334)
Q Consensus 91 ~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~iksg~~nI~I~nc~~~~~~g 163 (334)
+..|..++++..+++-... -|.-|+.+.-|+.++|.|..-.. -|.++-+.--..-....||+....+|
T Consensus 195 ygvHyM~t~~s~i~dn~s~-----~N~vG~ALMys~~l~V~~nrS~Gnrd~Gillnya~~s~i~~N~v~g~~~G 263 (408)
T COG3420 195 YGVHYMYTNDSRISDNSSR-----DNRVGYALMYSDRLKVSDNRSSGNRDHGILLNYANYSRIVGNRVAGNVSG 263 (408)
T ss_pred eeEEEEeccCcEeeccccc-----CCcceEEEEEeccEEEEcCcccCccccceeeeeeeccceeccEEEecccc
Confidence 4455555555555432211 24447777777777776664432 23444332211223334555544455
No 115
>PLN02497 probable pectinesterase
Probab=44.16 E-value=3.1e+02 Score=26.54 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=82.6
Q ss_pred EEeEecEEEEeEEEEcCCCC-----------ceE-EecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCC
Q 046362 72 FYASYNVTVRDIKINNSPLC-----------HLK-FDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGD 139 (334)
Q Consensus 72 ~~~~~nv~i~gi~i~n~~~~-----------~i~-~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gD 139 (334)
....+++..++|++.|...+ .+- ....+...+.+|++....| -+-.. .-.-..+||+|...=
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~V 184 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWDS-DGRHYFKRCTIQGAV 184 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceeeC-CCcEEEEeCEEEecc
Confidence 34578999999999997532 221 2347889999999998543 22222 235689999999876
Q ss_pred CeeeecCCceeEEEEeEEEcC-C-------ce-EEEeccCccCCCCcEEEEEEEeEEEecCCceEEEe-eecCCcceEEe
Q 046362 140 DCVSIQTGCSNVHIHHISCGP-G-------HG-ISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIK-TWQGGIGSVKN 209 (334)
Q Consensus 140 D~i~iksg~~nI~I~nc~~~~-~-------~g-i~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik-~~~g~~G~i~n 209 (334)
|=| .+. -...++||.+.. . .| |.-- ++ .+...-.-..|.||++.+.. -..+. .| +.-..
T Consensus 185 DFI-FG~--g~a~Fe~C~I~s~~~~~~~~~~g~ITA~--~r-~~~~~~~GfvF~~C~itg~g-~~yLGRPW----~~ysr 253 (331)
T PLN02497 185 DFI-FGS--GQSIYESCVIQVLGGQLEPGLAGFITAQ--GR-TNPYDANGFVFKNCLVYGTG-SAYLGRPW----RGYSR 253 (331)
T ss_pred cEE-ccC--ceEEEEccEEEEecCcCCCCCceEEEec--CC-CCCCCCceEEEEccEEccCC-CEEEeCCC----CCCce
Confidence 654 343 478999999863 1 12 2211 11 12233446789999997642 22222 12 23468
Q ss_pred EEEEeEEEeCC
Q 046362 210 VSFSSIQVWDV 220 (334)
Q Consensus 210 I~f~ni~~~~~ 220 (334)
+.|.+..|.+.
T Consensus 254 vvf~~t~m~~~ 264 (331)
T PLN02497 254 VLFYNSNLTDV 264 (331)
T ss_pred EEEEecccCCe
Confidence 88888888775
No 116
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=43.59 E-value=27 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=4.5
Q ss_pred eEEEEeEEEc
Q 046362 150 NVHIHHISCG 159 (334)
Q Consensus 150 nI~I~nc~~~ 159 (334)
+++|++|++.
T Consensus 3 ~~~i~~n~i~ 12 (26)
T smart00710 3 NVTIENNTIR 12 (26)
T ss_pred CEEEECCEEE
Confidence 3444444443
No 117
>PLN02916 pectinesterase family protein
Probab=36.73 E-value=4.9e+02 Score=26.74 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=85.0
Q ss_pred EEEeEecEEEEeEEEEcCCCC----c--eEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeee
Q 046362 71 RFYASYNVTVRDIKINNSPLC----H--LKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSI 144 (334)
Q Consensus 71 ~~~~~~nv~i~gi~i~n~~~~----~--i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~i 144 (334)
.....+++..++|++.|.... . +.+ ..+...+.+|++....| -+-..+ ..-..+||+|...=|=| .
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv-~~D~a~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-F 343 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRV-SSDLSVFYRCSFKGYQD-----TLFVHS-LRQFYRDCHIYGTIDFI-F 343 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEeccCc-----eeEeCC-CCEEEEecEEeccccee-c
Confidence 345567899999999997532 2 333 47899999999998543 333332 34688999999875654 3
Q ss_pred cCCceeEEEEeEEEcCC-----ceEEEeccCccCCCCcEEEEEEEeEEEecCCceE----EEeeecCCc-ceEEeEEEEe
Q 046362 145 QTGCSNVHIHHISCGPG-----HGISLGGLGKDKSVACVSDIVVEKISLQNTLAGV----RIKTWQGGI-GSVKNVSFSS 214 (334)
Q Consensus 145 ksg~~nI~I~nc~~~~~-----~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi----~Ik~~~g~~-G~i~nI~f~n 214 (334)
+ .-..+++||.+..- ..-.|=-.++ .....-.-+.|.||++....... ..++.=|+. +.-..+.|-+
T Consensus 344 G--~a~avFq~C~I~~~~~~~~~~g~ITAq~r-~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~ 420 (502)
T PLN02916 344 G--DAAVVFQNCDIFVRRPMDHQGNMITAQGR-DDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLK 420 (502)
T ss_pred c--CceEEEecCEEEEecCCCCCcceEEecCC-CCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEe
Confidence 3 45799999988531 1111211111 12233468899999998753211 112222321 3457788888
Q ss_pred EEEeCC
Q 046362 215 IQVWDV 220 (334)
Q Consensus 215 i~~~~~ 220 (334)
..|.+.
T Consensus 421 t~~~~~ 426 (502)
T PLN02916 421 TDLDGL 426 (502)
T ss_pred cccCCe
Confidence 888765
No 118
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=36.35 E-value=1.1e+02 Score=30.61 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=19.7
Q ss_pred ecEEEEeeEEecCC---CeeeecCCceeEEEEeEEEcCCce-EEE
Q 046362 126 KDVEIQHSDIACGD---DCVSIQTGCSNVHIHHISCGPGHG-ISL 166 (334)
Q Consensus 126 ~nV~I~n~~i~~gD---D~i~iksg~~nI~I~nc~~~~~~g-i~I 166 (334)
.+.+|++..+...| .-|++||+ .-+|++.+|..+.| |.+
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvKS~--~N~ir~Ntf~es~G~ltl 241 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVKSS--DNTIRNNTFRESQGSLTL 241 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEESB--T-EEES-EEES-SSEEEE
T ss_pred cceeeecchhhhcCCceeEEEeecC--CceEeccEEEeccceEEE
Confidence 68888888887654 35778873 34556666655443 444
No 119
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=33.63 E-value=1e+02 Score=29.81 Aligned_cols=44 Identities=5% Similarity=0.052 Sum_probs=21.7
Q ss_pred eecEEEEeeEEecCCCeeeecCC----------ceeEEEEeEEEcCCceEEEec
Q 046362 125 TKDVEIQHSDIACGDDCVSIQTG----------CSNVHIHHISCGPGHGISLGG 168 (334)
Q Consensus 125 s~nV~I~n~~i~~gDD~i~iksg----------~~nI~I~nc~~~~~~gi~IGS 168 (334)
+..+.++||.+....|-+-++.. .-.-.++||.+.+.--+-+|+
T Consensus 220 gDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIfGs 273 (405)
T COG4677 220 GDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFIFGS 273 (405)
T ss_pred CCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccceEEecc
Confidence 34555566655555555444432 012345666665444555554
No 120
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=32.91 E-value=2.8e+02 Score=27.89 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=33.5
Q ss_pred ceeEEEEeEEEcC--CceEEEeccCc---c-CCC-----------CcEEEEEEEeEEEecCCceEEEeeecCCcceEEeE
Q 046362 148 CSNVHIHHISCGP--GHGISLGGLGK---D-KSV-----------ACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNV 210 (334)
Q Consensus 148 ~~nI~I~nc~~~~--~~gi~IGS~g~---~-~~~-----------~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI 210 (334)
+.|..++|.+.-. =.|+-+|+-.. . .+. .--.|=.++|+...++ .|+-+. ++|.+|+|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 5789999987543 25888886411 0 111 1223555666666555 344333 34677899888
Q ss_pred EEEeEE
Q 046362 211 SFSSIQ 216 (334)
Q Consensus 211 ~f~ni~ 216 (334)
+.+++.
T Consensus 341 ~~~d~~ 346 (549)
T PF09251_consen 341 TVQDCA 346 (549)
T ss_dssp EEES-S
T ss_pred Eeeccc
Confidence 887654
No 121
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=24.07 E-value=2.4e+02 Score=27.27 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=24.1
Q ss_pred eecEEEEeeEEecCC----CeeeecCCceeEEEEeEEEcC-CceEEEecc
Q 046362 125 TKDVEIQHSDIACGD----DCVSIQTGCSNVHIHHISCGP-GHGISLGGL 169 (334)
Q Consensus 125 s~nV~I~n~~i~~gD----D~i~iksg~~nI~I~nc~~~~-~~gi~IGS~ 169 (334)
++|++|+|....+-+ -+|++......+.++||.+.+ .+-+-.|..
T Consensus 193 ~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~ 242 (405)
T COG4677 193 LQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNS 242 (405)
T ss_pred cccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCC
Confidence 456666665544321 245554444567777776653 334555543
Done!