BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046364
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
          Protein Causative In Wolfram Syndrome 2
 pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
          Protein Causative In Wolfram Syndrome 2
          Length = 83

 Score = 28.9 bits (63), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 13 EDPHVLERMDGVAFADTPLLVAAGCRCWEH---PFCDG 47
          E+P V+  ++     D  L  AA CRCW     P CDG
Sbjct: 26 ENPKVVNEIN---IEDLSLTKAAYCRCWRSKTFPACDG 60


>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
 pdb|2ZPA|B Chain B, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
          Length = 671

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 18/106 (16%)

Query: 4   VEALYSVFVEDPHVLERMDGVAFADTPLLVAAGCRCWEHPFCDGNGKLKALAGLEAKSSL 63
           V+ L    + D   LE + G AFA  PLL + GC                L  L   S L
Sbjct: 565 VDPLNDAVLSDDDWLE-LAGFAFAHRPLLTSLGC----------------LLRLLQTSEL 607

Query: 64  AQPHARGFVGGIAIDV-LFGWLRLSNKEQILKWKDDDGNTALHMRN 108
           A P  RG +   A D  L   L+LS ++ +L  + ++   AL   N
Sbjct: 608 ALPALRGRLQKNASDAQLCTTLKLSGRKXLLVRQREEAAQALFALN 653


>pdb|3I2F|A Chain A, Cocaine Esterase With Mutations T172r  G173Q, BOUND TO DTT
           ADDUCT
          Length = 587

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 47  GNGKLKALAGLEAKSSLAQPHARGFVGGIAIDVLFGWLRLSNKEQILKWKD 97
           G G LKA+A   A + L +    G  G ++++ L GW  L  ++ I    D
Sbjct: 130 GVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGWSALIGRQLITSRSD 180


>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
          Ala Inserted Between Asp 67 And Lys 68
 pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
          Ala Inserted Between Asp 67 And Lys 68
          Length = 77

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 13 EDPHVLERMDGVAFADTPLLVAAGCRCW---EHPFCDG 47
          ++P ++   D     D     A  CRCW   + PFCDG
Sbjct: 20 DNPKIVHAFDMEDLGDAK---AVYCRCWRSKKFPFCDG 54


>pdb|3I2G|A Chain A, Cocaine Esterase With Mutation G173q, Bound To Dtt Adduct
          Length = 587

 Score = 25.8 bits (55), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 47  GNGKLKALAGLEAKSSLAQPHARGFVGGIAIDVLFGWLRLSNKEQILKWKD 97
           G G LKA+A   A + L +    G  G ++++ L GW  L   + I    D
Sbjct: 130 GVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGWSALIGTQLITSRSD 180


>pdb|3I2I|A Chain A, Cocaine Esterase With Mutation T172r, Bound To Dtt Adduct
          Length = 587

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 47  GNGKLKALAGLEAKSSLAQPHARGFVGGIAIDVLFGWLRLSNKEQILKWKD 97
           G G LKA+A   A + L +    G  G ++++ L GW  L  +  I    D
Sbjct: 130 GVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGWSALIGRGLITSRSD 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,916,298
Number of Sequences: 62578
Number of extensions: 145646
Number of successful extensions: 259
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 14
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)