BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046366
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 51 FRETPTSHVITLDIP--------RMKKDDVKIXXXXXXXXXXXXXXXKWHRAERPFDKVW 102
++ETP +HV D+P +D + KWHR ER K
Sbjct: 6 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 65
Query: 103 RQFRMPMSADLDHVKAHLENGVLRIT 128
R+FR+ A ++ VKA LENGVL +T
Sbjct: 66 RRFRLLEDAKVEEVKAGLENGVLTVT 91
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 51 FRETPTSHVITLDIP--------RMKKDDVKIXXXXXXXXXXXXXXXKWHRAERPFDKVW 102
++ETP +HV D+P +D + KWHR ER K
Sbjct: 48 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 107
Query: 103 RQFRMPMSADLDHVKAHLENGVLRIT 128
R+FR+ A ++ VKA LENGVL +T
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVT 133
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 51 FRETPTSHVITLDIP--------RMKKDDVKIXXXXXXXXXXXXXXXKWHRAERPFDKVW 102
++ETP +HV D+P +D + KWHR ER K
Sbjct: 5 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 64
Query: 103 RQFRMPMSADLDHVKAHLENGVLRIT 128
R+FR+ A ++ VKA LENGVL +T
Sbjct: 65 RRFRLLEDAKVEEVKAGLENGVLTVT 90
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 90 KWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127
++ R ER + R+F +P SAD D + A NGVL I
Sbjct: 58 RFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEI 95
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 90 KWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127
++ R ER + R+F +P SAD D + A NGVL I
Sbjct: 55 RFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEI 92
>pdb|3AFJ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
pdb|3AFJ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
Length = 842
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 101 VWRQFRMPMSADLDHVKAHLENGVLRIT 128
VW +P+ ADLDH +A G RIT
Sbjct: 100 VWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3ACT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
pdb|3ACT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
Length = 842
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 101 VWRQFRMPMSADLDHVKAHLENGVLRIT 128
VW +P+ ADLDH +A G RIT
Sbjct: 100 VWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3ACS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
pdb|3ACS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
Length = 842
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 101 VWRQFRMPMSADLDHVKAHLENGVLRIT 128
VW +P+ ADLDH +A G RIT
Sbjct: 100 VWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|2CQS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|2CQT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|3QFY|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFY|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFZ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QFZ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QG0|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
pdb|3QG0|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
Length = 842
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 101 VWRQFRMPMSADLDHVKAHLENGVLRIT 128
VW +P+ ADLDH +A G RIT
Sbjct: 100 VWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 28 VNALMLYTRSPFFDVMFPMTEDPFRETP---TSHVITLDIPRMKKD 70
+N L YT+S FFDV M E P + P TS+ +T + +D
Sbjct: 55 INNLKKYTKSIFFDVHL-MVEYPEKYVPLLKTSNQLTFHFEALNED 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,753,910
Number of Sequences: 62578
Number of extensions: 78248
Number of successful extensions: 183
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)