Query 046366
Match_columns 128
No_of_seqs 203 out of 1525
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.9 7.7E-23 1.7E-27 135.9 9.7 79 49-128 3-89 (92)
2 PRK11597 heat shock chaperone 99.9 5.4E-22 1.2E-26 141.9 9.0 79 47-128 34-118 (142)
3 COG0071 IbpA Molecular chapero 99.9 7.3E-22 1.6E-26 141.4 9.5 81 47-128 42-129 (146)
4 cd06471 ACD_LpsHSP_like Group 99.9 1.1E-21 2.4E-26 130.3 9.1 79 48-128 3-90 (93)
5 cd06470 ACD_IbpA-B_like Alpha- 99.9 2.5E-21 5.4E-26 128.5 9.8 78 48-128 3-87 (90)
6 PRK10743 heat shock protein Ib 99.9 3E-21 6.5E-26 137.4 9.2 79 48-128 37-120 (137)
7 cd06479 ACD_HspB7_like Alpha c 99.8 6E-21 1.3E-25 124.8 7.7 74 52-128 4-78 (81)
8 cd06497 ACD_alphaA-crystallin_ 99.8 1.5E-20 3.3E-25 124.0 8.9 73 51-128 5-83 (86)
9 cd06482 ACD_HspB10 Alpha cryst 99.8 1.2E-20 2.6E-25 124.9 8.1 74 54-127 6-83 (87)
10 cd06477 ACD_HspB3_Like Alpha c 99.8 1.4E-20 3E-25 123.5 8.0 71 53-128 4-80 (83)
11 cd06475 ACD_HspB1_like Alpha c 99.8 1.4E-20 3.1E-25 124.1 7.6 80 48-128 3-83 (86)
12 cd06476 ACD_HspB2_like Alpha c 99.8 2.8E-20 6E-25 122.1 8.3 76 53-128 4-80 (83)
13 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.9E-20 1.1E-24 120.8 9.3 72 52-128 3-80 (83)
14 PF00011 HSP20: Hsp20/alpha cr 99.8 7.9E-20 1.7E-24 122.7 9.6 78 51-128 2-84 (102)
15 cd06498 ACD_alphaB-crystallin_ 99.8 4.7E-20 1E-24 121.2 7.7 72 52-128 3-80 (84)
16 cd06481 ACD_HspB9_like Alpha c 99.8 8.5E-20 1.9E-24 120.7 8.3 73 53-128 4-84 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.8 3.9E-19 8.5E-24 116.1 7.6 75 54-128 5-80 (83)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 1.3E-18 2.7E-23 112.8 9.6 77 52-128 3-85 (88)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 5.4E-16 1.2E-20 103.4 8.6 77 52-128 11-88 (91)
20 cd00298 ACD_sHsps_p23-like Thi 99.5 5.5E-13 1.2E-17 83.1 8.4 76 52-128 2-77 (80)
21 KOG0710 Molecular chaperone (s 99.4 7.6E-14 1.7E-18 104.6 4.5 77 52-128 90-176 (196)
22 KOG3591 Alpha crystallins [Pos 99.4 1.8E-12 3.9E-17 95.6 7.8 75 51-128 67-145 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.2 9.9E-11 2.1E-15 74.7 8.7 65 51-128 1-65 (78)
24 cd06463 p23_like Proteins cont 98.9 1.4E-08 3.1E-13 64.4 9.2 70 51-128 1-70 (84)
25 PF05455 GvpH: GvpH; InterPro 98.9 6.5E-09 1.4E-13 76.6 8.2 65 53-128 98-164 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.6 3.9E-07 8.5E-12 58.5 8.2 70 51-128 2-71 (84)
27 PF08190 PIH1: pre-RNA process 97.9 5.3E-05 1.1E-09 59.9 8.4 65 53-128 258-325 (328)
28 PF04969 CS: CS domain; Inter 97.9 0.00028 6E-09 44.0 9.3 71 50-128 4-76 (79)
29 cd06465 p23_hB-ind1_like p23_l 97.4 0.0021 4.6E-08 43.4 8.7 70 50-128 4-73 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 97.3 0.0028 6E-08 40.8 8.1 69 51-127 2-70 (84)
31 cd06467 p23_NUDC_like p23_like 97.2 0.0029 6.3E-08 40.4 7.6 67 51-128 3-71 (85)
32 cd06493 p23_NUDCD1_like p23_NU 97.1 0.0063 1.4E-07 39.4 8.3 67 51-128 3-71 (85)
33 cd06468 p23_CacyBP p23_like do 96.9 0.015 3.4E-07 37.7 9.0 71 50-128 5-79 (92)
34 cd06488 p23_melusin_like p23_l 96.7 0.025 5.5E-07 36.7 8.7 70 50-127 4-73 (87)
35 cd06494 p23_NUDCD2_like p23-li 96.5 0.023 4.9E-07 37.8 7.3 68 49-128 8-77 (93)
36 cd06492 p23_mNUDC_like p23-lik 95.8 0.12 2.5E-06 33.8 8.2 67 51-128 3-73 (87)
37 cd06495 p23_NUDCD3_like p23-li 95.0 0.23 5E-06 33.5 7.7 70 49-128 7-81 (102)
38 PLN03088 SGT1, suppressor of 94.3 0.3 6.5E-06 39.5 8.0 71 48-127 158-229 (356)
39 KOG1309 Suppressor of G2 allel 91.3 0.87 1.9E-05 34.1 6.1 36 48-83 5-40 (196)
40 cd00237 p23 p23 binds heat sho 90.1 4.3 9.3E-05 27.4 8.8 61 50-120 5-65 (106)
41 PF13349 DUF4097: Domain of un 87.6 4.5 9.7E-05 28.3 7.5 70 54-127 72-146 (166)
42 cd06482 ACD_HspB10 Alpha cryst 85.4 1.5 3.3E-05 28.7 3.7 28 100-128 9-36 (87)
43 cd06476 ACD_HspB2_like Alpha c 84.7 1.7 3.7E-05 28.0 3.7 29 99-128 7-35 (83)
44 cd06497 ACD_alphaA-crystallin_ 83.5 2.2 4.7E-05 27.6 3.8 29 99-128 10-38 (86)
45 cd06478 ACD_HspB4-5-6 Alpha-cr 82.8 2.6 5.7E-05 27.0 3.9 29 99-128 7-35 (83)
46 cd06477 ACD_HspB3_Like Alpha c 82.6 2.4 5.3E-05 27.4 3.7 28 100-128 8-35 (83)
47 cd06470 ACD_IbpA-B_like Alpha- 82.0 4.2 9.2E-05 26.3 4.8 29 99-128 11-39 (90)
48 cd06490 p23_NCB5OR p23_like do 81.5 12 0.00025 24.1 9.1 67 51-127 3-73 (87)
49 cd06471 ACD_LpsHSP_like Group 81.1 3 6.6E-05 26.8 3.8 29 99-128 10-38 (93)
50 cd06479 ACD_HspB7_like Alpha c 79.6 3.5 7.6E-05 26.5 3.7 28 100-128 9-36 (81)
51 PF13349 DUF4097: Domain of un 79.6 18 0.00039 25.2 8.7 19 70-88 57-75 (166)
52 PRK10743 heat shock protein Ib 79.2 3.3 7.2E-05 29.3 3.8 28 100-128 46-73 (137)
53 cd06475 ACD_HspB1_like Alpha c 79.0 4 8.7E-05 26.3 3.9 29 99-128 10-38 (86)
54 cd06498 ACD_alphaB-crystallin_ 78.8 4 8.6E-05 26.3 3.8 29 99-128 7-35 (84)
55 cd06526 metazoan_ACD Alpha-cry 77.3 4.2 9.2E-05 25.7 3.6 28 100-128 8-35 (83)
56 cd06472 ACD_ScHsp26_like Alpha 75.8 5.8 0.00013 25.5 4.0 29 99-128 9-38 (92)
57 cd06481 ACD_HspB9_like Alpha c 75.6 5.5 0.00012 25.8 3.8 28 100-128 8-35 (87)
58 PRK11597 heat shock chaperone 73.2 6.6 0.00014 28.0 4.0 28 100-128 44-71 (142)
59 PF00011 HSP20: Hsp20/alpha cr 73.0 9 0.0002 24.8 4.4 29 99-128 7-35 (102)
60 KOG2265 Nuclear distribution p 70.0 27 0.00059 26.0 6.7 68 49-127 21-90 (179)
61 cd06464 ACD_sHsps-like Alpha-c 66.9 12 0.00025 23.0 3.8 29 99-128 7-35 (88)
62 PF14913 DPCD: DPCD protein fa 63.7 47 0.001 25.1 6.9 65 53-128 93-165 (194)
63 PF06977 SdiA-regulated: SdiA- 60.4 46 0.001 25.8 6.7 64 62-127 15-80 (248)
64 COG0071 IbpA Molecular chapero 60.2 16 0.00034 25.7 3.8 28 100-128 51-78 (146)
65 cd06469 p23_DYX1C1_like p23_li 56.0 31 0.00068 20.9 4.3 28 56-83 36-64 (78)
66 COG5091 SGT1 Suppressor of G2 50.4 9.2 0.0002 30.8 1.4 34 50-83 180-213 (368)
67 cd06467 p23_NUDC_like p23_like 48.0 33 0.00072 21.2 3.5 28 100-127 9-36 (85)
68 KOG3260 Calcyclin-binding prot 46.3 57 0.0012 24.7 4.9 41 51-91 79-121 (224)
69 cd06494 p23_NUDCD2_like p23-li 39.5 57 0.0012 21.4 3.7 28 100-127 16-43 (93)
70 PF08308 PEGA: PEGA domain; I 39.4 49 0.0011 19.8 3.2 27 54-80 33-59 (71)
71 PRK05518 rpl6p 50S ribosomal p 38.8 1.6E+02 0.0035 21.8 6.7 17 69-85 13-29 (180)
72 PTZ00027 60S ribosomal protein 35.6 1.9E+02 0.004 21.6 6.4 17 69-85 13-29 (190)
73 TIGR03654 L6_bact ribosomal pr 33.7 1.9E+02 0.0041 21.1 6.5 16 69-84 11-26 (175)
74 PF04972 BON: BON domain; Int 30.6 83 0.0018 18.3 3.2 19 65-83 12-30 (64)
75 PF12080 GldM_C: GldM C-termin 29.2 83 0.0018 23.1 3.5 23 60-82 18-40 (181)
76 PF07122 VLPT: Variable length 28.9 18 0.00039 19.0 -0.1 16 59-74 13-28 (30)
77 TIGR03653 arch_L6P archaeal ri 28.8 2.3E+02 0.0051 20.6 6.9 16 69-84 7-22 (170)
78 PF03983 SHD1: SLA1 homology d 28.4 56 0.0012 20.6 2.1 32 49-80 13-44 (70)
79 PRK05498 rplF 50S ribosomal pr 28.2 2.4E+02 0.0052 20.6 6.5 16 69-84 12-27 (178)
80 cd08024 GH16_CCF Coelomic cyto 26.9 3E+02 0.0065 22.1 6.6 16 95-110 111-126 (330)
81 PF07076 DUF1344: Protein of u 26.5 81 0.0018 19.4 2.5 17 63-79 8-24 (61)
82 PF14814 UB2H: Bifunctional tr 26.0 1.4E+02 0.003 19.0 3.8 28 98-125 40-68 (85)
83 KOG3413 Mitochondrial matrix p 25.0 29 0.00063 25.2 0.4 20 109-128 67-86 (156)
84 PF00347 Ribosomal_L6: Ribosom 24.9 1.7E+02 0.0036 17.7 5.9 16 69-84 2-17 (77)
85 PRK00446 cyaY frataxin-like pr 23.9 56 0.0012 22.0 1.6 13 116-128 29-41 (105)
86 CHL00140 rpl6 ribosomal protei 23.7 3E+02 0.0064 20.1 6.0 16 69-84 12-27 (178)
87 cd00503 Frataxin Frataxin is a 23.3 61 0.0013 21.8 1.7 15 114-128 28-42 (105)
88 COG4004 Uncharacterized protei 23.2 1.4E+02 0.0031 19.9 3.4 30 51-84 28-57 (96)
89 cd02175 GH16_lichenase lichena 23.0 2.1E+02 0.0045 21.1 4.8 15 96-110 66-80 (212)
90 PF06433 Me-amine-dh_H: Methyl 22.9 4.3E+02 0.0094 21.7 6.9 71 57-127 78-162 (342)
91 TIGR03421 FeS_CyaY iron donor 21.6 62 0.0014 21.7 1.5 14 115-128 26-39 (102)
92 PRK01625 sspH acid-soluble spo 20.7 2.1E+02 0.0046 17.4 3.7 19 68-86 12-30 (59)
93 cd02178 GH16_beta_agarase Beta 20.2 2.2E+02 0.0049 21.7 4.6 37 74-110 60-110 (258)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.89 E-value=7.7e-23 Score=135.94 Aligned_cols=79 Identities=51% Similarity=0.806 Sum_probs=70.7
Q ss_pred CCccccCCeEEEEEEeCCCCCCceEEEEeCC-EEEEE-------eecCceEEEEeeccceEEEEEECCCCccccceEEEE
Q 046366 49 DPFRETPTSHVITLDIPRMKKDDVKIEVEEN-RVLRE-------EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL 120 (128)
Q Consensus 49 d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~-~l~i~-------~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~ 120 (128)
|.+ |++++|+|.++|||++||+|+|+++++ .|.|. ..++.+++++|+.+|.|.|+|+||.+|+.++|+|+|
T Consensus 3 dv~-E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 3 DWK-ETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred cEE-EcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 444 999999999999999999999999975 67772 234567899999999999999999999999999999
Q ss_pred eCCEEEEC
Q 046366 121 ENGVLRIT 128 (128)
Q Consensus 121 ~nGvL~It 128 (128)
+||+|+|+
T Consensus 82 ~nGvL~I~ 89 (92)
T cd06472 82 ENGVLTVT 89 (92)
T ss_pred ECCEEEEE
Confidence 99999985
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.87 E-value=5.4e-22 Score=141.94 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=70.3
Q ss_pred CCCCccc-cCCeEEEEEEeCCCCCCceEEEEeCCEEEEE-----eecCceEEEEeeccceEEEEEECCCCccccceEEEE
Q 046366 47 TEDPFRE-TPTSHVITLDIPRMKKDDVKIEVEENRVLRE-----EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL 120 (128)
Q Consensus 47 ~~d~~~E-~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~-----~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~ 120 (128)
..|++ | ++++|+|.++|||++|+||+|++++|.|+|. +.++.+|+++||.+|.|+|+|.||++||.+ +|+|
T Consensus 34 ~vdI~-e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~ 110 (142)
T PRK11597 34 PYNIE-KSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF 110 (142)
T ss_pred cEEEE-EcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence 35666 5 5789999999999999999999999999992 234568999999999999999999999998 7999
Q ss_pred eCCEEEEC
Q 046366 121 ENGVLRIT 128 (128)
Q Consensus 121 ~nGvL~It 128 (128)
+||||+|+
T Consensus 111 ~nGVL~I~ 118 (142)
T PRK11597 111 VNGLLHID 118 (142)
T ss_pred cCCEEEEE
Confidence 99999996
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.3e-22 Score=141.44 Aligned_cols=81 Identities=36% Similarity=0.530 Sum_probs=73.9
Q ss_pred CCCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEE-------eecCceEEEEeeccceEEEEEECCCCccccceEEE
Q 046366 47 TEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLRE-------EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAH 119 (128)
Q Consensus 47 ~~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~-------~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~ 119 (128)
..|++ |++++|+|.++|||++|+||+|+++++.|+|+ +.++..++++|+.+|.|+|+|+||..|+++.++|+
T Consensus 42 ~vdi~-e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~ 120 (146)
T COG0071 42 PVDIE-ETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAK 120 (146)
T ss_pred cEEEE-EcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeE
Confidence 45656 99999999999999999999999999999991 23467899999999999999999999999999999
Q ss_pred EeCCEEEEC
Q 046366 120 LENGVLRIT 128 (128)
Q Consensus 120 ~~nGvL~It 128 (128)
|+||+|+|+
T Consensus 121 ~~nGvL~I~ 129 (146)
T COG0071 121 YKNGLLTVT 129 (146)
T ss_pred eeCcEEEEE
Confidence 999999995
No 4
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.87 E-value=1.1e-21 Score=130.32 Aligned_cols=79 Identities=32% Similarity=0.528 Sum_probs=70.1
Q ss_pred CCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEe---------ecCceEEEEeeccceEEEEEECCCCccccceEE
Q 046366 48 EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREE---------VEGEKWHRAERPFDKVWRQFRMPMSADLDHVKA 118 (128)
Q Consensus 48 ~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~---------~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A 118 (128)
.|.+ |++++|+|.++|||++|++|+|+++++.|.|.. ..+.+++++|+.+|+|+|+|.|| +++.+.|+|
T Consensus 3 ~di~-e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 3 TDIK-ETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred eeEE-EcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 4555 999999999999999999999999999999921 11236899999999999999999 799999999
Q ss_pred EEeCCEEEEC
Q 046366 119 HLENGVLRIT 128 (128)
Q Consensus 119 ~~~nGvL~It 128 (128)
+|+||+|+|+
T Consensus 81 ~~~dGvL~I~ 90 (93)
T cd06471 81 KYENGVLKIT 90 (93)
T ss_pred EEECCEEEEE
Confidence 9999999995
No 5
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=2.5e-21 Score=128.46 Aligned_cols=78 Identities=28% Similarity=0.351 Sum_probs=68.6
Q ss_pred CCCcccc-CCeEEEEEEeCCCCCCceEEEEeCCEEEEE------eecCceEEEEeeccceEEEEEECCCCccccceEEEE
Q 046366 48 EDPFRET-PTSHVITLDIPRMKKDDVKIEVEENRVLRE------EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL 120 (128)
Q Consensus 48 ~d~~~E~-~~~~~i~~dlPGv~kedI~V~v~~~~l~i~------~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~ 120 (128)
.|++ |+ +++|++.++|||++||+|+|+++++.|.|. ..++.+|+++|+.+|.|.|+|.||.+++.+ +|+|
T Consensus 3 ~di~-e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIE-KTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL 79 (90)
T ss_pred eeeE-EcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence 4556 65 599999999999999999999999999992 225568899999999999999999999875 8999
Q ss_pred eCCEEEEC
Q 046366 121 ENGVLRIT 128 (128)
Q Consensus 121 ~nGvL~It 128 (128)
+||+|+|+
T Consensus 80 ~~GvL~I~ 87 (90)
T cd06470 80 ENGLLTID 87 (90)
T ss_pred eCCEEEEE
Confidence 99999995
No 6
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.85 E-value=3e-21 Score=137.40 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEE-----eecCceEEEEeeccceEEEEEECCCCccccceEEEEeC
Q 046366 48 EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLRE-----EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLEN 122 (128)
Q Consensus 48 ~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~-----~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~n 122 (128)
.|.+.|++++|+|.++|||++|+||+|+++++.|+|+ +.++.+|+++||.+|+|+|+|.||++|+.+ +|+|+|
T Consensus 37 ~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~d 114 (137)
T PRK10743 37 YNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANLVN 114 (137)
T ss_pred EEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeC
Confidence 4555358999999999999999999999999999992 234567999999999999999999999998 499999
Q ss_pred CEEEEC
Q 046366 123 GVLRIT 128 (128)
Q Consensus 123 GvL~It 128 (128)
|||+|+
T Consensus 115 GVL~I~ 120 (137)
T PRK10743 115 GLLYID 120 (137)
T ss_pred CEEEEE
Confidence 999995
No 7
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.84 E-value=6e-21 Score=124.78 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=63.7
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEE-eCCEEEEC
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGVLRIT 128 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGvL~It 128 (128)
.|++++|.|.+|+||++||||+|+++++.|.|....... .+..+|+|.|+|.||.+||+++|+|+| +||+|+|+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~---~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLAS---DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEecc---CCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 399999999999999999999999999999993322111 123578999999999999999999998 99999995
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.84 E-value=1.5e-20 Score=124.02 Aligned_cols=73 Identities=19% Similarity=0.409 Sum_probs=63.0
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEe-----ecCceEEEEeeccceEEEEEECCCCccccceEEEE-eCCE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREE-----VEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGV 124 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~-----~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGv 124 (128)
+.|++++|.|.++|||++||+|+|++.++.|+|.. .++..|.++ .|.|+|.||++||.++|+|+| +||+
T Consensus 5 v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~~dGv 79 (86)
T cd06497 5 VRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISR-----EFHRRYRLPSNVDQSAITCSLSADGM 79 (86)
T ss_pred EEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEE-----EEEEEEECCCCCChHHeEEEeCCCCE
Confidence 44999999999999999999999999999999922 223345544 499999999999999999999 8999
Q ss_pred EEEC
Q 046366 125 LRIT 128 (128)
Q Consensus 125 L~It 128 (128)
|+|+
T Consensus 80 L~I~ 83 (86)
T cd06497 80 LTFS 83 (86)
T ss_pred EEEE
Confidence 9995
No 9
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.84 E-value=1.2e-20 Score=124.88 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=63.0
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeCCEEEEEee---cCceEEEEeeccceEEEEEECCCCccccceEEEEeCC-EEEE
Q 046366 54 TPTSHVITLDIPRMKKDDVKIEVEENRVLREEV---EGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENG-VLRI 127 (128)
Q Consensus 54 ~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~---~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nG-vL~I 127 (128)
++++|+|.+||||++|++|+|+++++.|+|... ........||.+|.|.|+|.||.+||.++|+|+|+|| +|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 578999999999999999999999999999221 1111224588999999999999999999999999776 9998
No 10
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=1.4e-20 Score=123.54 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=61.0
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEee-----cCceEEEEeeccceEEEEEECCCCccccceEEEE-eCCEEE
Q 046366 53 ETPTSHVITLDIPRMKKDDVKIEVEENRVLREEV-----EGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGVLR 126 (128)
Q Consensus 53 E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~-----~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGvL~ 126 (128)
|++++|.|.++|||++||+|+|+++++.|+|+.. ++..+ ..+.|.|+|+||.+|+.++|+|+| +||+|+
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~-----~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~ 78 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGF-----ISRSFTRQYQLPDGVEHKDLSAMLCHDGILV 78 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCE-----EEEEEEEEEECCCCcchheEEEEEcCCCEEE
Confidence 7889999999999999999999999999999321 12222 234899999999999999999998 899999
Q ss_pred EC
Q 046366 127 IT 128 (128)
Q Consensus 127 It 128 (128)
|+
T Consensus 79 I~ 80 (83)
T cd06477 79 VE 80 (83)
T ss_pred EE
Confidence 85
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.83 E-value=1.4e-20 Score=124.13 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEe-CCEEE
Q 046366 48 EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE-NGVLR 126 (128)
Q Consensus 48 ~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~-nGvL~ 126 (128)
.+++ |++++|.|.++|||++||+|+|++.++.|+|+......-.......+.|+|+|+||.+||.++|+|+|+ ||+|+
T Consensus 3 ~~i~-e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIR-QTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEE-EcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 3545 999999999999999999999999999999922111100001122358999999999999999999996 99999
Q ss_pred EC
Q 046366 127 IT 128 (128)
Q Consensus 127 It 128 (128)
|+
T Consensus 82 I~ 83 (86)
T cd06475 82 VE 83 (86)
T ss_pred EE
Confidence 85
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=2.8e-20 Score=122.10 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=62.2
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEe-CCEEEEC
Q 046366 53 ETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE-NGVLRIT 128 (128)
Q Consensus 53 E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~-nGvL~It 128 (128)
.++++|.|.+++||++||+|+|++.++.|+|...........++..+.|.|+|.||.+||.++|+|+|+ ||+|+|+
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 467899999999999999999999999999933222222223344557999999999999999999995 9999995
No 13
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.83 E-value=4.9e-20 Score=120.75 Aligned_cols=72 Identities=19% Similarity=0.376 Sum_probs=61.8
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEe-----ecCceEEEEeeccceEEEEEECCCCccccceEEEE-eCCEE
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREE-----VEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGVL 125 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~-----~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGvL 125 (128)
.+++++|.|.+||||++||+|+|++.++.|+|.. .++..+.++ .|.|+|.||.+||.++|+|+| +||+|
T Consensus 3 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~~dGvL 77 (83)
T cd06478 3 RLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISR-----EFHRRYRLPPGVDPAAITSSLSADGVL 77 (83)
T ss_pred eecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEE-----EEEEEEECCCCcChHHeEEEECCCCEE
Confidence 4789999999999999999999999999999922 122334444 499999999999999999999 69999
Q ss_pred EEC
Q 046366 126 RIT 128 (128)
Q Consensus 126 ~It 128 (128)
+|+
T Consensus 78 ~I~ 80 (83)
T cd06478 78 TIS 80 (83)
T ss_pred EEE
Confidence 995
No 14
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.82 E-value=7.9e-20 Score=122.70 Aligned_cols=78 Identities=37% Similarity=0.685 Sum_probs=64.9
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEE----E-eecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLR----E-EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVL 125 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i----~-~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL 125 (128)
+.|++++|.|.+++||+++++|+|+++++.|.| . ...+..+..+|+.++.|.|+|.||.++|.++|+|+|+||+|
T Consensus 2 i~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL 81 (102)
T PF00011_consen 2 IKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGVL 81 (102)
T ss_dssp EEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSEE
T ss_pred eEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCEE
Confidence 348999999999999999999999999999998 2 34667888999999999999999999999999999999999
Q ss_pred EEC
Q 046366 126 RIT 128 (128)
Q Consensus 126 ~It 128 (128)
+|+
T Consensus 82 ~I~ 84 (102)
T PF00011_consen 82 TIT 84 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 15
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.82 E-value=4.7e-20 Score=121.20 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=61.5
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEe-----ecCceEEEEeeccceEEEEEECCCCccccceEEEEe-CCEE
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREE-----VEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE-NGVL 125 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~-----~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~-nGvL 125 (128)
++++++|.|.+|+||++||+|+|++.++.|+|.. .++..+++ +.|.|+|.||.+||.++|+|+|+ ||+|
T Consensus 3 ~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~dGvL 77 (84)
T cd06498 3 RLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFIS-----REFQRKYRIPADVDPLTITSSLSPDGVL 77 (84)
T ss_pred EeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEE-----EEEEEEEECCCCCChHHcEEEeCCCCEE
Confidence 4789999999999999999999999999999922 12233443 35999999999999999999995 9999
Q ss_pred EEC
Q 046366 126 RIT 128 (128)
Q Consensus 126 ~It 128 (128)
+|+
T Consensus 78 ~I~ 80 (84)
T cd06498 78 TVC 80 (84)
T ss_pred EEE
Confidence 995
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.81 E-value=8.5e-20 Score=120.66 Aligned_cols=73 Identities=16% Similarity=0.360 Sum_probs=62.4
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEee----c---CceEEEEeeccceEEEEEECCCCccccceEEEE-eCCE
Q 046366 53 ETPTSHVITLDIPRMKKDDVKIEVEENRVLREEV----E---GEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGV 124 (128)
Q Consensus 53 E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~----~---~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGv 124 (128)
+.+++|.|.+++||++|+||+|+++++.|+|... . ...+. +.+|.|.|+|.||.+||.++|+|+| +||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 6678999999999999999999999999999211 1 12332 4578999999999999999999999 9999
Q ss_pred EEEC
Q 046366 125 LRIT 128 (128)
Q Consensus 125 L~It 128 (128)
|+|+
T Consensus 81 L~I~ 84 (87)
T cd06481 81 LHIR 84 (87)
T ss_pred EEEE
Confidence 9985
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=3.9e-19 Score=116.06 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=61.2
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeC-CEEEEC
Q 046366 54 TPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLEN-GVLRIT 128 (128)
Q Consensus 54 ~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~n-GvL~It 128 (128)
.+++|.+.++|||++||+|+|+++++.|.|...........++.+++|.|+|+||.+||.++++|+|+| |+|+|+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEE
Confidence 346999999999999999999999999999322111111233456889999999999999999999998 999995
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=1.3e-18 Score=112.79 Aligned_cols=77 Identities=43% Similarity=0.657 Sum_probs=68.1
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEee------cCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEE
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREEV------EGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVL 125 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~------~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL 125 (128)
.|++++|++.++|||+++++|+|++.++.|.|... ....+...|+.+|.|.|+|+||.+++.++++|.|+||+|
T Consensus 3 ~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L 82 (88)
T cd06464 3 YETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENGVL 82 (88)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCEE
Confidence 38889999999999999999999999999999221 112467889999999999999999999999999999999
Q ss_pred EEC
Q 046366 126 RIT 128 (128)
Q Consensus 126 ~It 128 (128)
+|+
T Consensus 83 ~I~ 85 (88)
T cd06464 83 TIT 85 (88)
T ss_pred EEE
Confidence 985
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.66 E-value=5.4e-16 Score=103.36 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=61.3
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEe-CCEEEEC
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE-NGVLRIT 128 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~-nGvL~It 128 (128)
..++++|.|.+|+.|+++|||+|++.++.|+|....+.+-.......+.|.|+|.||.+||.+.|+|++. ||+|+|+
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 3788999999999999999999999999999921111100001122368999999999999999999996 9999984
No 20
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.46 E-value=5.5e-13 Score=83.15 Aligned_cols=76 Identities=39% Similarity=0.593 Sum_probs=63.4
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.+++++|.+.+++||+.+++++|.++++.+.|......... .+...+.|.+.+.||..+++++++|++.+|+|+|+
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~ 77 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASLENGVLEIT 77 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEE
Confidence 47889999999999999999999999999999432221111 44456789999999999999999999999999984
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.6e-14 Score=104.62 Aligned_cols=77 Identities=40% Similarity=0.813 Sum_probs=69.1
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeCCE-EEE-----E----eecCceEEEEeeccceEEEEEECCCCccccceEEEEe
Q 046366 52 RETPTSHVITLDIPRMKKDDVKIEVEENR-VLR-----E----EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE 121 (128)
Q Consensus 52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~-l~i-----~----~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~ 121 (128)
.|++++|++.+++||+++++++|+++++. +.| . ...+..++..|+..|.|.|++.||++++.+.|+|.|+
T Consensus 90 ~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~ 169 (196)
T KOG0710|consen 90 KESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEME 169 (196)
T ss_pred ccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhh
Confidence 49999999999999999999999999995 666 1 1245668889999999999999999999999999999
Q ss_pred CCEEEEC
Q 046366 122 NGVLRIT 128 (128)
Q Consensus 122 nGvL~It 128 (128)
||||+|+
T Consensus 170 nGVL~Vv 176 (196)
T KOG0710|consen 170 NGVLTVV 176 (196)
T ss_pred CCeEEEE
Confidence 9999985
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.8e-12 Score=95.59 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=61.8
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEe---ecCceEEEEeeccceEEEEEECCCCccccceEEEE-eCCEEE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREE---VEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGVLR 126 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~---~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~-~nGvL~ 126 (128)
...++++|.|.+|+..++||+|+|++.|+.|.|+. ++...+.... ..|.|+|.||.+||++.|++.+ .||+|+
T Consensus 67 ~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~---R~F~R~y~LP~~vdp~~V~S~LS~dGvLt 143 (173)
T KOG3591|consen 67 IVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVS---RSFVRKYLLPEDVDPTSVTSTLSSDGVLT 143 (173)
T ss_pred cccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEE---EEEEEEecCCCCCChhheEEeeCCCceEE
Confidence 34788999999999999999999999999999922 2212222222 2599999999999999999999 899999
Q ss_pred EC
Q 046366 127 IT 128 (128)
Q Consensus 127 It 128 (128)
|+
T Consensus 144 I~ 145 (173)
T KOG3591|consen 144 IE 145 (173)
T ss_pred EE
Confidence 95
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.23 E-value=9.9e-11 Score=74.70 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=58.5
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
|.++++.+.|.+++||+++++++|+++++.+.+.. ..|.+.+.||..|++++++|++.+|.|.|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~ 65 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKIGNGVLVFT 65 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEEeCCEEEEE
Confidence 45889999999999999999999999998877743 258899999999999999999999999885
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.93 E-value=1.4e-08 Score=64.37 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=60.3
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
|.++++.+.|.+++||+.+++++|.+.++.+.+..... ..+.|...+.|+..|++++.++++++|.|.|+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~--------~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~ 70 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG--------GGKEYLLEGELFGPIDPEESKWTVEDRKIEIT 70 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC--------CCCceEEeeEccCccchhhcEEEEeCCEEEEE
Confidence 45889999999999999999999999999998854332 12468888999999999999999999999884
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.92 E-value=6.5e-09 Score=76.63 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=50.0
Q ss_pred ccCC-eEEEEEEeCCCCCCc-eEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 53 ETPT-SHVITLDIPRMKKDD-VKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 53 E~~~-~~~i~~dlPGv~ked-I~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
+.++ +.+|.+|||||++++ |+|.++.+...+....+. ++.+++.||.. +++.++|+|.||||+|+
T Consensus 98 e~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~----------~~~krv~L~~~-~~e~~~~t~nNgILEIr 164 (177)
T PF05455_consen 98 ERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE----------KYLKRVALPWP-DPEITSATFNNGILEIR 164 (177)
T ss_pred ecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC----------ceEeeEecCCC-ccceeeEEEeCceEEEE
Confidence 5566 799999999999998 999998554444222222 35678999976 68889999999999984
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.61 E-value=3.9e-07 Score=58.52 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=59.3
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
|.++++...|.+.+||+.+++++|.+.++.+.+..... ..+.|...+.|+..|+++..++++.+|.+.|+
T Consensus 2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~--------~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~ 71 (84)
T cd06466 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP--------GGSEYQLELDLFGPIDPEQSKVSVLPTKVEIT 71 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC--------CCCeEEEecccccccCchhcEEEEeCeEEEEE
Confidence 56899999999999999999999999999888853322 12257778899999999999999999998874
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.95 E-value=5.3e-05 Score=59.93 Aligned_cols=65 Identities=23% Similarity=0.447 Sum_probs=55.8
Q ss_pred ccCCeEEEEEEeCCC-CCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEE--eCCEEEEC
Q 046366 53 ETPTSHVITLDIPRM-KKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL--ENGVLRIT 128 (128)
Q Consensus 53 E~~~~~~i~~dlPGv-~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~--~nGvL~It 128 (128)
...+.++|+++|||+ +..+|+++|.+..+.+..... .|.-.+.||..|+.+..+|+| +.+.|+||
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vt 325 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVT 325 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEEE
Confidence 457899999999999 899999999999998854332 367789999999999999999 55899986
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.88 E-value=0.00028 Score=44.03 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=56.1
Q ss_pred CccccCCeEEEEEEeCCC--CCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 50 PFRETPTSHVITLDIPRM--KKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv--~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
.|.++++...|.+.+++. ++++++|.+.++.+.+.-..+.. ..|.-...|...|+++..+.++.++.|.|
T Consensus 4 ~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--------~~~~~~~~L~~~I~~~~s~~~~~~~~i~i 75 (79)
T PF04969_consen 4 DWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--------KEYLLEGELFGEIDPDESTWKVKDNKIEI 75 (79)
T ss_dssp EEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--------CEEEEEEEBSS-BECCCEEEEEETTEEEE
T ss_pred EEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--------ceEEEEEEEeeeEcchhcEEEEECCEEEE
Confidence 477999999999999665 59999999999999985332211 14677788999999999999999998877
Q ss_pred C
Q 046366 128 T 128 (128)
Q Consensus 128 t 128 (128)
+
T Consensus 76 ~ 76 (79)
T PF04969_consen 76 T 76 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.39 E-value=0.0021 Score=43.37 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred CccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 50 PFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.++.+...|.+.+||+ ++++|.+..+.+.+....... ...|.-.+.|...|+++..+.++.++.+.|+
T Consensus 4 ~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~-------~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~ 73 (108)
T cd06465 4 LWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGG-------GKKYEFDLEFYKEIDPEESKYKVTGRQIEFV 73 (108)
T ss_pred eeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCC-------CeeEEEEeEhhhhccccccEEEecCCeEEEE
Confidence 367999999999999998 889999999999985432110 1136677899999999999999988888774
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.30 E-value=0.0028 Score=40.78 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=54.0
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
|.++++...|.+.++|+.+++++|+++++.+.+...... ...|.-.+.|...|++++.+.+..++-+.|
T Consensus 2 W~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~--------~~~y~~~~~L~~~I~p~~s~~~v~~~kiei 70 (84)
T cd06489 2 WYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS--------GNDYSLKLHLLHPIVPEQSSYKILSTKIEI 70 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC--------CCcEEEeeecCceecchhcEEEEeCcEEEE
Confidence 568899999999999999999999999999888432111 013666778999999998888887776655
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.24 E-value=0.0029 Score=40.43 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=52.2
Q ss_pred ccccCCeEEEEEEeC-CCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeC-CEEEEC
Q 046366 51 FRETPTSHVITLDIP-RMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLEN-GVLRIT 128 (128)
Q Consensus 51 ~~E~~~~~~i~~dlP-Gv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~n-GvL~It 128 (128)
|.++++...|.+.+| |+++++++|++.++.+.+....+. +.-.-.|...|+++...-++++ ..+.|+
T Consensus 3 W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~-----------~~l~~~L~~~I~~~~s~w~~~~~~~v~i~ 71 (85)
T cd06467 3 WTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGE-----------PLLDGELYAKVKVDESTWTLEDGKLLEIT 71 (85)
T ss_pred EEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCC-----------ceEcCcccCceeEcCCEEEEeCCCEEEEE
Confidence 668899999999997 789999999999999988543211 1222358889999988888888 777663
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.12 E-value=0.0063 Score=39.36 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=51.9
Q ss_pred ccccCCeEEEEEEeC-CCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCC-EEEEC
Q 046366 51 FRETPTSHVITLDIP-RMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENG-VLRIT 128 (128)
Q Consensus 51 ~~E~~~~~~i~~dlP-Gv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nG-vL~It 128 (128)
|.++.+...|.+.+| |+++++++|++..+.+.+...++.. + -.-.|...|+++..+-+.++| .|.|+
T Consensus 3 W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~----------~-~~g~L~~~I~~d~Stw~i~~~~~l~i~ 71 (85)
T cd06493 3 WQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAP----------L-LEGKLYSSIDHESSTWIIKENKSLEVS 71 (85)
T ss_pred cEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCe----------E-EeCcccCcccccCcEEEEeCCCEEEEE
Confidence 678999999999996 9999999999999999885321111 1 233788899999988888777 57663
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.93 E-value=0.015 Score=37.71 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=54.1
Q ss_pred CccccCCeEEEEEEeCCCCC---CceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEE-CCCCccccceEEEEeCCEE
Q 046366 50 PFRETPTSHVITLDIPRMKK---DDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFR-MPMSADLDHVKAHLENGVL 125 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv~k---edI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~-LP~~vd~~~I~A~~~nGvL 125 (128)
.|.++++...|.+.+|++.+ ++++|+...+.+.+....... .+|.-.+. |-..|++++.+.+..++-+
T Consensus 5 ~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~--------~~~~~~~~~L~~~I~~e~s~~~~~~~ki 76 (92)
T cd06468 5 AWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNG--------KNYRFTINRLLKKIDPEKSSFKVKTDRI 76 (92)
T ss_pred eeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCC--------cEEEEEehHhhCccCccccEEEEeCCEE
Confidence 47799999999999999987 999999999999885322111 12444454 8889999998988887776
Q ss_pred EEC
Q 046366 126 RIT 128 (128)
Q Consensus 126 ~It 128 (128)
.|+
T Consensus 77 ~i~ 79 (92)
T cd06468 77 VIT 79 (92)
T ss_pred EEE
Confidence 663
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.72 E-value=0.025 Score=36.73 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=53.6
Q ss_pred CccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 50 PFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
.|.+++++..|.+.+.|+.++++++.++++.+.+...-.. ...|.-.+.|-..|+++..+.+...+-+.|
T Consensus 4 dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~--------~~~y~~~l~L~~~I~~~~s~~~v~~~kvei 73 (87)
T cd06488 4 DWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG--------NKEFQLDIELWGVIDVEKSSVNMLPTKVEI 73 (87)
T ss_pred cEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC--------CceEEEEeeccceEChhHcEEEecCcEEEE
Confidence 4779999999999999999999999999988776321111 013677788999999998777776665555
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.47 E-value=0.023 Score=37.80 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCccccCCeEEEEEEeC-CCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCE-EE
Q 046366 49 DPFRETPTSHVITLDIP-RMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGV-LR 126 (128)
Q Consensus 49 d~~~E~~~~~~i~~dlP-Gv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGv-L~ 126 (128)
..|.++.+...|.+.+| |++++|++|.+..+.+.+.-.+ +.+. .| .|+..|+++...-++++|- |.
T Consensus 8 y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g-~~~l-----~G------~L~~~I~~destWtled~k~l~ 75 (93)
T cd06494 8 GCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKG-QEVL-----KG------KLFDSVVADECTWTLEDRKLIR 75 (93)
T ss_pred cEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECC-EEEE-----cC------cccCccCcccCEEEEECCcEEE
Confidence 34779999999999888 8999999999999999985422 1111 12 5788899999999998875 67
Q ss_pred EC
Q 046366 127 IT 128 (128)
Q Consensus 127 It 128 (128)
|+
T Consensus 76 I~ 77 (93)
T cd06494 76 IV 77 (93)
T ss_pred EE
Confidence 63
No 36
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.85 E-value=0.12 Score=33.80 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=50.6
Q ss_pred ccccCCeEEEEEEeC---CCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCC-EEE
Q 046366 51 FRETPTSHVITLDIP---RMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENG-VLR 126 (128)
Q Consensus 51 ~~E~~~~~~i~~dlP---Gv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nG-vL~ 126 (128)
|.++.++..|.+.+| |+++.+++|.+..+.+.+.-..+... + .=.|...|+++...-.+++| .|.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~---------i--~G~L~~~V~~des~Wtled~~~l~ 71 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPI---------I--DGELYNEVKVEESSWLIEDGKVVT 71 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceE---------E--eCcccCcccccccEEEEeCCCEEE
Confidence 667888999999996 38899999999999999854322111 1 22577889999988889886 677
Q ss_pred EC
Q 046366 127 IT 128 (128)
Q Consensus 127 It 128 (128)
|+
T Consensus 72 i~ 73 (87)
T cd06492 72 VN 73 (87)
T ss_pred EE
Confidence 63
No 37
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.02 E-value=0.23 Score=33.54 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCccccCCeEEEEEEeC-CC-CCCceEEEEeCCEEEEEeec--CceEEEEeeccceEEEEEECCCCccccceEEEEeCCE
Q 046366 49 DPFRETPTSHVITLDIP-RM-KKDDVKIEVEENRVLREEVE--GEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGV 124 (128)
Q Consensus 49 d~~~E~~~~~~i~~dlP-Gv-~kedI~V~v~~~~l~i~~~~--~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGv 124 (128)
..|.++.+...|.+.+| |. +..+++|++..+.+.+.-.. +.... +.. .|+..|+.+...-.++||-
T Consensus 7 Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~--------i~G--~L~~~V~~des~Wtled~~ 76 (102)
T cd06495 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVL--------MEG--EFTHKINTENSLWSLEPGK 76 (102)
T ss_pred eEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceE--------EeC--cccCcccCccceEEEeCCC
Confidence 34779999999999999 54 67899999999999985432 21111 111 5788899999999999874
Q ss_pred -EEEC
Q 046366 125 -LRIT 128 (128)
Q Consensus 125 -L~It 128 (128)
|.|+
T Consensus 77 ~l~I~ 81 (102)
T cd06495 77 CVLLS 81 (102)
T ss_pred EEEEE
Confidence 5663
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.26 E-value=0.3 Score=39.51 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=52.5
Q ss_pred CCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEee-cCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEE
Q 046366 48 EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEV-EGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLR 126 (128)
Q Consensus 48 ~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~-~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~ 126 (128)
...|.+++++..|.+.+.|+.+++++|++.++.+.|.-. .+. ..|...+.|-..|+++..+.+....-+.
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~---------~~y~~~~~L~~~I~p~~s~~~v~~~Kie 228 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE---------DAYHLQPRLFGKIIPDKCKYEVLSTKIE 228 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC---------cceeecccccccccccccEEEEecceEE
Confidence 345789999999999999999999999999998887321 111 1355557788888888777766544444
Q ss_pred E
Q 046366 127 I 127 (128)
Q Consensus 127 I 127 (128)
|
T Consensus 229 i 229 (356)
T PLN03088 229 I 229 (356)
T ss_pred E
Confidence 3
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=91.29 E-value=0.87 Score=34.08 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEE
Q 046366 48 EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLR 83 (128)
Q Consensus 48 ~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i 83 (128)
...|.+++...+|.+-.+||.++|++|++..+.|.+
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~ 40 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSI 40 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEEeecceEEE
Confidence 344679999999999999999999999999988887
No 40
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=90.10 E-value=4.3 Score=27.42 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=42.3
Q ss_pred CccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEE
Q 046366 50 PFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL 120 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~ 120 (128)
.|.++.+...|.+++|+ .++++|+++++.+.+....... ..|.-.+.|-..|++++.+-+.
T Consensus 5 ~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g--------~~y~~~l~l~~~I~pe~Sk~~v 65 (106)
T cd00237 5 LWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDN--------VKIYNEIELYDRVDPNDSKHKR 65 (106)
T ss_pred eeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCC--------cEEEEEEEeecccCcccCeEEe
Confidence 36688899999999999 5799999999988885322110 0244456676777777555443
No 41
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=87.63 E-value=4.5 Score=28.34 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=45.0
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeCCEEEEEeecCce-----EEEEeeccceEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 54 TPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEK-----WHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 54 ~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~~~~~~~-----~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
..+...++++. +++.++++.+++.|.|....... +..... ...-.-.+.+|.+...++++.+-.+|-++|
T Consensus 72 ~~~~~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i 146 (166)
T PF13349_consen 72 PSDDDKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSSGDITI 146 (166)
T ss_pred EcCCccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEccc-CCCcEEEEEECCCCceeEEEEEeccccEEE
Confidence 33334445555 22268899999999995442221 111111 235677899999998889999988887765
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.44 E-value=1.5 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=25.7
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-...|| +++.++|+-+++||.|+|+
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ 36 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVS 36 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 688889999 8999999999999999985
No 43
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=84.72 E-value=1.7 Score=28.03 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=25.9
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.+| ++++++|+.+++||.|+|+
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~ 35 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVS 35 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEE
Confidence 3688899998 8999999999999999984
No 44
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=83.53 E-value=2.2 Score=27.62 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=26.0
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.+| +++++.|+-+.++|.|+|+
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~ 38 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIH 38 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 3688899998 8999999999999999985
No 45
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=82.77 E-value=2.6 Score=26.98 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=26.1
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.+| ++++++|+-++.+|.|+|+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ 35 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIH 35 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 3688899999 8999999999999999984
No 46
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=82.64 E-value=2.4 Score=27.42 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=25.5
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-.+.|| +++++.|+-++++|.|+|+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ 35 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIK 35 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEE
Confidence 588889998 8999999999999999985
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=82.04 E-value=4.2 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=26.0
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
+.|.-.+.|| +++.+.|+-.+++|.|+|+
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~ 39 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVT 39 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 4688899999 7999999999999999985
No 48
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=81.48 E-value=12 Score=24.13 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=42.4
Q ss_pred ccccCCeEEEEEEeCC--CCCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEe--CCEEE
Q 046366 51 FRETPTSHVITLDIPR--MKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLE--NGVLR 126 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPG--v~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~--nGvL~ 126 (128)
|.+++++.+|.+..++ ..++++.+....+.+.+.-.-.+. .|...+.|-..|+++. +.++. -|-++
T Consensus 3 WyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~---------~~~~~~~L~~~I~~~~-~~~~~~~~~KVE 72 (87)
T cd06490 3 WFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDK---------SYLLHLDLSNEVQWPC-EVRISTETGKIE 72 (87)
T ss_pred ceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCc---------eEEEeeeccccCCCCc-EEEEcccCceEE
Confidence 6699999999999985 455666666666677773211111 2566677777777664 44443 44554
Q ss_pred E
Q 046366 127 I 127 (128)
Q Consensus 127 I 127 (128)
|
T Consensus 73 I 73 (87)
T cd06490 73 L 73 (87)
T ss_pred E
Confidence 4
No 49
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=81.06 E-value=3 Score=26.82 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=25.7
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.|| +++.++|+-.+++|.|+|+
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~ 38 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDYKDGYLTIS 38 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 3688889999 7999999999999999984
No 50
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=79.63 E-value=3.5 Score=26.49 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=25.6
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-...+| ++++++|+-+.++|.|+|+
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ 36 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVH 36 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 588889999 8999999999999999984
No 51
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=79.55 E-value=18 Score=25.16 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=10.9
Q ss_pred CceEEEEeCCEEEEEeecC
Q 046366 70 DDVKIEVEENRVLREEVEG 88 (128)
Q Consensus 70 edI~V~v~~~~l~i~~~~~ 88 (128)
++|+|+.....+.|...++
T Consensus 57 ~~i~i~~~~~~V~I~~~~~ 75 (166)
T PF13349_consen 57 KKIDIDTDNGDVEIKPSDD 75 (166)
T ss_pred CEEEEEcCceeEEEEEcCC
Confidence 4666666666666644333
No 52
>PRK10743 heat shock protein IbpA; Provisional
Probab=79.22 E-value=3.3 Score=29.29 Aligned_cols=28 Identities=4% Similarity=0.068 Sum_probs=24.9
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-...|| +++.++|+-+++||.|+|+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ 73 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVK 73 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 477788999 8999999999999999984
No 53
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=79.02 E-value=4 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=26.0
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.|| ++++++|+-++.++.|+|+
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~ 38 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEIT 38 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEE
Confidence 3688899998 8999999999999999985
No 54
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=78.78 E-value=4 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.8
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-...+| ++++++|+-+..+|.|+|+
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~ 35 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIH 35 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 3688899998 8999999999999999984
No 55
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=77.34 E-value=4.2 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=25.6
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-.+.|| ++.++.|+-+.+++.|+|+
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~ 35 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVE 35 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEE
Confidence 688899999 6999999999999999984
No 56
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=75.81 E-value=5.8 Score=25.53 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=24.3
Q ss_pred ceEEEEEECCCCccccceEEEEeCC-EEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENG-VLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nG-vL~It 128 (128)
..|.-.+.|| +++.++|+-++.+| +|+|+
T Consensus 9 ~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~ 38 (92)
T cd06472 9 EAHVFKADVP-GVKKEDVKVEVEDGRVLRIS 38 (92)
T ss_pred CeEEEEEECC-CCChHhEEEEEeCCCEEEEE
Confidence 3678889999 68999999999865 89884
No 57
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=75.61 E-value=5.5 Score=25.77 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=25.1
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-.+.+| ++.++.|+-++++|.|+|+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ 35 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVT 35 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEE
Confidence 588889998 8899999999999999984
No 58
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=73.16 E-value=6.6 Score=28.03 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=24.7
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-...|| +++.++|+-.+++|.|+|+
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ 71 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVK 71 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEE
Confidence 477788999 8999999999999999985
No 59
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=72.98 E-value=9 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=24.0
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.+| +++.++|+-++++|.|+|+
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~ 35 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVIS 35 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCcccee
Confidence 4688899999 8899999999999999984
No 60
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=69.97 E-value=27 Score=25.98 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCccccCCeEEEEEEeC-CC-CCCceEEEEeCCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEE
Q 046366 49 DPFRETPTSHVITLDIP-RM-KKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLR 126 (128)
Q Consensus 49 d~~~E~~~~~~i~~dlP-Gv-~kedI~V~v~~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~ 126 (128)
..|.+|=....|.+.+| |+ +..+|.|.+....+.|...+..-+.- =.|+..|+.+...-+++||.+.
T Consensus 21 y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ild-----------G~L~~~vk~des~WtiEd~k~i 89 (179)
T KOG2265|consen 21 YTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILD-----------GELSHSVKVDESTWTIEDGKMI 89 (179)
T ss_pred eeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceec-----------CccccccccccceEEecCCEEE
Confidence 34556666777887765 77 88999999999988884333222221 2366778888888889998765
Q ss_pred E
Q 046366 127 I 127 (128)
Q Consensus 127 I 127 (128)
|
T Consensus 90 ~ 90 (179)
T KOG2265|consen 90 V 90 (179)
T ss_pred E
Confidence 5
No 61
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.87 E-value=12 Score=23.04 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.3
Q ss_pred ceEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 99 DKVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 99 g~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
..|.-.+.|| +++.++|+-+..++.|.|+
T Consensus 7 ~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~ 35 (88)
T cd06464 7 DAYVVEADLP-GFKKEDIKVEVEDGVLTIS 35 (88)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEE
Confidence 3688899999 5999999999999999884
No 62
>PF14913 DPCD: DPCD protein family
Probab=63.73 E-value=47 Score=25.08 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=47.4
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeCCE--EEEEeecCceEEEEeeccceEEEEEECCC------CccccceEEEEeCCE
Q 046366 53 ETPTSHVITLDIPRMKKDDVKIEVEENR--VLREEVEGEKWHRAERPFDKVWRQFRMPM------SADLDHVKAHLENGV 124 (128)
Q Consensus 53 E~~~~~~i~~dlPGv~kedI~V~v~~~~--l~i~~~~~~~~~~~Er~~g~F~R~~~LP~------~vd~~~I~A~~~nGv 124 (128)
++..+|.-.+-==-+.++--+|+++++. ++|+.... .|.++|++|+ ..+.+.++..+.|..
T Consensus 93 dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNK-----------KYyKk~~IPDl~R~~l~l~~~~ls~~h~nNT 161 (194)
T PF14913_consen 93 DTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNK-----------KYYKKFSIPDLDRCGLPLEQSALSFAHQNNT 161 (194)
T ss_pred cCccceEEEEccCCCCccceEEEEcCCCcEEEEECcCc-----------cceeEecCCcHHhhCCCcchhhceeeeecCe
Confidence 7778888888766678888889888754 55543322 3666788884 236777888889999
Q ss_pred EEEC
Q 046366 125 LRIT 128 (128)
Q Consensus 125 L~It 128 (128)
|.|+
T Consensus 162 LIIs 165 (194)
T PF14913_consen 162 LIIS 165 (194)
T ss_pred EEEE
Confidence 9885
No 63
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.38 E-value=46 Score=25.78 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred EEeCCCCCCceEEEEe--CCEEEEEeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 62 LDIPRMKKDDVKIEVE--ENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 62 ~dlPGv~kedI~V~v~--~~~l~i~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
-.|||+.+|==-|+.+ .++|.....+......-.. .|+..|++++...-|++.|+. ..||.+.|
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl 80 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY-LGNGRYVL 80 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE-ECCCEEEE
Confidence 5799999864445555 5666664444444444443 588999999987779999875 47776655
No 64
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.24 E-value=16 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.5
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEEC
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~It 128 (128)
.|.-.+.|| +++.++|+-++++|.|+|+
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~ 78 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIR 78 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEE
Confidence 466788898 8999999999999999985
No 65
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=56.02 E-value=31 Score=20.92 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=24.7
Q ss_pred CeEEEEEEeCCC-CCCceEEEEeCCEEEE
Q 046366 56 TSHVITLDIPRM-KKDDVKIEVEENRVLR 83 (128)
Q Consensus 56 ~~~~i~~dlPGv-~kedI~V~v~~~~l~i 83 (128)
+.|.+.+++|+- ++|+.+..+.++.+.|
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i 64 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVF 64 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEE
Confidence 568999999865 9999999999998888
No 66
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=50.42 E-value=9.2 Score=30.78 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.5
Q ss_pred CccccCCeEEEEEEeCCCCCCceEEEEeCCEEEE
Q 046366 50 PFRETPTSHVITLDIPRMKKDDVKIEVEENRVLR 83 (128)
Q Consensus 50 ~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i 83 (128)
.|.+|.+...|-+.-|-++.|+|++.+++|+|.|
T Consensus 180 d~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I 213 (368)
T COG5091 180 DFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSI 213 (368)
T ss_pred eccccceeEEEEEecCCCCccccceeecCCccee
Confidence 4669999999999999999999999999999988
No 67
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=47.95 E-value=33 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.5
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
...-.|.+|..++.++++..+++.-|+|
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v 36 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKV 36 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEE
Confidence 3566778888888888888887776665
No 68
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=46.25 E-value=57 Score=24.68 Aligned_cols=41 Identities=7% Similarity=0.292 Sum_probs=32.1
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEE--EeecCceE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLR--EEVEGEKW 91 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i--~~~~~~~~ 91 (128)
|-+.++...+.+.|-||..|+++|+.....+-+ +...+..|
T Consensus 79 WDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y 121 (224)
T KOG3260|consen 79 WDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNY 121 (224)
T ss_pred ccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcce
Confidence 547778888999999999999999999887655 44444444
No 69
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=39.49 E-value=57 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=23.7
Q ss_pred eEEEEEECCCCccccceEEEEeCCEEEE
Q 046366 100 KVWRQFRMPMSADLDHVKAHLENGVLRI 127 (128)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~nGvL~I 127 (128)
.-.-+|++|.++..+.+...++..-|+|
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V 43 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISL 43 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEE
Confidence 4566788999999999999998887776
No 70
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=39.40 E-value=49 Score=19.83 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=22.0
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeCCE
Q 046366 54 TPTSHVITLDIPRMKKDDVKIEVEENR 80 (128)
Q Consensus 54 ~~~~~~i~~dlPGv~kedI~V~v~~~~ 80 (128)
..+.|.|++..||+..-.-+|.+..+.
T Consensus 33 ~~G~~~v~v~~~Gy~~~~~~v~v~~~~ 59 (71)
T PF08308_consen 33 PPGEHTVTVEKPGYEPYTKTVTVKPGE 59 (71)
T ss_pred CCccEEEEEEECCCeeEEEEEEECCCC
Confidence 367899999999998888888888553
No 71
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=38.81 E-value=1.6e+02 Score=21.76 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCceEEEEeCCEEEEEe
Q 046366 69 KDDVKIEVEENRVLREE 85 (128)
Q Consensus 69 kedI~V~v~~~~l~i~~ 85 (128)
|++++|+++++.+.++.
T Consensus 13 P~~V~v~i~~~~v~VkG 29 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKG 29 (180)
T ss_pred CCCCEEEEECCEEEEEC
Confidence 68899999998777753
No 72
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=35.63 E-value=1.9e+02 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.1
Q ss_pred CCceEEEEeCCEEEEEe
Q 046366 69 KDDVKIEVEENRVLREE 85 (128)
Q Consensus 69 kedI~V~v~~~~l~i~~ 85 (128)
|++++|+++++.+.++.
T Consensus 13 P~~V~V~i~~~~v~VkG 29 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTG 29 (190)
T ss_pred CCCCEEEEECCEEEEEC
Confidence 78999999998777753
No 73
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=33.71 E-value=1.9e+02 Score=21.10 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.2
Q ss_pred CCceEEEEeCCEEEEE
Q 046366 69 KDDVKIEVEENRVLRE 84 (128)
Q Consensus 69 kedI~V~v~~~~l~i~ 84 (128)
|++|+|+++++.+.++
T Consensus 11 P~~V~v~~~~~~v~v~ 26 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVK 26 (175)
T ss_pred CCCcEEEEeCCEEEEE
Confidence 6899999998877774
No 74
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=30.58 E-value=83 Score=18.26 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.2
Q ss_pred CCCCCCceEEEEeCCEEEE
Q 046366 65 PRMKKDDVKIEVEENRVLR 83 (128)
Q Consensus 65 PGv~kedI~V~v~~~~l~i 83 (128)
|+++..+|+|.+.++.+.+
T Consensus 12 ~~~~~~~i~v~v~~g~v~L 30 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTL 30 (64)
T ss_dssp -CTT-TTEEEEEECTEEEE
T ss_pred cccCCCeEEEEEECCEEEE
Confidence 4677779999999999988
No 75
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=29.16 E-value=83 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCceEEEEeCCEEE
Q 046366 60 ITLDIPRMKKDDVKIEVEENRVL 82 (128)
Q Consensus 60 i~~dlPGv~kedI~V~v~~~~l~ 82 (128)
|.+.+||+..+.+.++..++.|.
T Consensus 18 isIsvpgv~~~~v~~s~~ggsl~ 40 (181)
T PF12080_consen 18 ISISVPGVPSNKVPASATGGSLS 40 (181)
T ss_pred EEEEeCCCCccccEEEeeCCEEE
Confidence 67889999999999888876554
No 76
>PF07122 VLPT: Variable length PCR target protein (VLPT); InterPro: IPR009805 This entry represents a 29 residue repeated sequence which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. E. chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown [].
Probab=28.88 E-value=18 Score=18.99 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=12.5
Q ss_pred EEEEEeCCCCCCceEE
Q 046366 59 VITLDIPRMKKDDVKI 74 (128)
Q Consensus 59 ~i~~dlPGv~kedI~V 74 (128)
...++||+-+||.|++
T Consensus 13 ss~vELp~pskE~vQL 28 (30)
T PF07122_consen 13 SSSVELPSPSKEEVQL 28 (30)
T ss_pred ccceecCCchHhhhcc
Confidence 3467899999998875
No 77
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=28.77 E-value=2.3e+02 Score=20.63 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.3
Q ss_pred CCceEEEEeCCEEEEE
Q 046366 69 KDDVKIEVEENRVLRE 84 (128)
Q Consensus 69 kedI~V~v~~~~l~i~ 84 (128)
|++++|+++++.+.++
T Consensus 7 P~~V~v~i~~~~i~vk 22 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVK 22 (170)
T ss_pred CCCCEEEEeCCEEEEE
Confidence 6889999999877775
No 78
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=28.40 E-value=56 Score=20.61 Aligned_cols=32 Identities=3% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCccccCCeEEEEEEeCCCCCCceEEEEeCCE
Q 046366 49 DPFRETPTSHVITLDIPRMKKDDVKIEVEENR 80 (128)
Q Consensus 49 d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~ 80 (128)
-.|.+..+.|.|++++=|+....|.+.-.+|.
T Consensus 13 RtWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~ 44 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVNDGKVHLHKTNGV 44 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEETTEEEEE-TTS-
T ss_pred eEEEeCCCCEEEEEEEEEeeCCEEEEEecCCe
Confidence 45778899999999999999999999888763
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=28.17 E-value=2.4e+02 Score=20.58 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.4
Q ss_pred CCceEEEEeCCEEEEE
Q 046366 69 KDDVKIEVEENRVLRE 84 (128)
Q Consensus 69 kedI~V~v~~~~l~i~ 84 (128)
|++|+|+++++.+.++
T Consensus 12 P~~V~v~~~~~~v~vk 27 (178)
T PRK05498 12 PAGVEVTINGNVVTVK 27 (178)
T ss_pred CCCCEEEEECCEEEEE
Confidence 6899999999877774
No 80
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=26.86 E-value=3e+02 Score=22.15 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=11.9
Q ss_pred eeccceEEEEEECCCC
Q 046366 95 ERPFDKVWRQFRMPMS 110 (128)
Q Consensus 95 Er~~g~F~R~~~LP~~ 110 (128)
+..||+++-+..||..
T Consensus 111 ~f~YGrvE~RaKlP~G 126 (330)
T cd08024 111 SFKYGRVEVRAKLPTG 126 (330)
T ss_pred ceeceEEEEEEECCCC
Confidence 3467888888888853
No 81
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=26.52 E-value=81 Score=19.38 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.1
Q ss_pred EeCCCCCCceEEEEeCC
Q 046366 63 DIPRMKKDDVKIEVEEN 79 (128)
Q Consensus 63 dlPGv~kedI~V~v~~~ 79 (128)
-+..++++..+|.+++|
T Consensus 8 ~I~~id~~~~titLdDG 24 (61)
T PF07076_consen 8 TIKSIDPETMTITLDDG 24 (61)
T ss_pred EEEEEcCCceEEEecCC
Confidence 34456677777777775
No 82
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=26.01 E-value=1.4e+02 Score=19.00 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=17.7
Q ss_pred cceEEEEEECCCCc-cccceEEEEeCCEE
Q 046366 98 FDKVWRQFRMPMSA-DLDHVKAHLENGVL 125 (128)
Q Consensus 98 ~g~F~R~~~LP~~v-d~~~I~A~~~nGvL 125 (128)
.--|.|.|.+|++. ....+.-+|++|-+
T Consensus 40 i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V 68 (85)
T PF14814_consen 40 IEIYTRGFDFPDGQEPARRVRLTFSGGRV 68 (85)
T ss_dssp EEEEE--EEETTCEE--EEEEEEEETTEE
T ss_pred EEEEECCCCCCCCCccCEEEEEEECCCEE
Confidence 33478999999887 44557888888743
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=25.00 E-value=29 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCccccceEEEEeCCEEEEC
Q 046366 109 MSADLDHVKAHLENGVLRIT 128 (128)
Q Consensus 109 ~~vd~~~I~A~~~nGvL~It 128 (128)
+.+..+.-.+.|.||||||.
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~ 86 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLK 86 (156)
T ss_pred hhcCccccccccccceEEEE
Confidence 44444556678999999973
No 84
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=24.89 E-value=1.7e+02 Score=17.65 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCceEEEEeCCEEEEE
Q 046366 69 KDDVKIEVEENRVLRE 84 (128)
Q Consensus 69 kedI~V~v~~~~l~i~ 84 (128)
|+.++|+++++.+.+.
T Consensus 2 P~gV~v~~~~~~i~v~ 17 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVK 17 (77)
T ss_dssp STTCEEEEETTEEEEE
T ss_pred CCcEEEEEeCcEEEEE
Confidence 5788999999766664
No 85
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.95 E-value=56 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.1
Q ss_pred eEEEEeCCEEEEC
Q 046366 116 VKAHLENGVLRIT 128 (128)
Q Consensus 116 I~A~~~nGvL~It 128 (128)
+.+.+.+|||+|+
T Consensus 29 ~D~e~~~gVLti~ 41 (105)
T PRK00446 29 IDCERNGGVLTLT 41 (105)
T ss_pred eeeeccCCEEEEE
Confidence 6788899999985
No 86
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=23.73 E-value=3e+02 Score=20.14 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=13.1
Q ss_pred CCceEEEEeCCEEEEE
Q 046366 69 KDDVKIEVEENRVLRE 84 (128)
Q Consensus 69 kedI~V~v~~~~l~i~ 84 (128)
|++|+|+++++.+.++
T Consensus 12 P~~V~v~i~~~~v~vk 27 (178)
T CHL00140 12 PDNVNVSIDDQIIKVK 27 (178)
T ss_pred CCCCEEEEECCEEEEE
Confidence 6789999998877774
No 87
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.31 E-value=61 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.1
Q ss_pred cceEEEEeCCEEEEC
Q 046366 114 DHVKAHLENGVLRIT 128 (128)
Q Consensus 114 ~~I~A~~~nGvL~It 128 (128)
..+.+.+.+|||+|+
T Consensus 28 ~d~D~e~~~gVLti~ 42 (105)
T cd00503 28 ADIDVETQGGVLTLT 42 (105)
T ss_pred cCEeeeccCCEEEEE
Confidence 457788899999984
No 88
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.24 E-value=1.4e+02 Score=19.88 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.5
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEE
Q 046366 51 FRETPTSHVITLDIPRMKKDDVKIEVEENRVLRE 84 (128)
Q Consensus 51 ~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~ 84 (128)
+++++| .|....||.+ .|++..++..|.|.
T Consensus 28 v~~eGD--~ivas~pgis--~ieik~E~kkL~v~ 57 (96)
T COG4004 28 VSEEGD--RIVASSPGIS--RIEIKPENKKLLVN 57 (96)
T ss_pred Eeeccc--EEEEecCCce--EEEEecccceEEEe
Confidence 446666 7888999997 58888888888883
No 89
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=22.99 E-value=2.1e+02 Score=21.06 Aligned_cols=15 Identities=0% Similarity=-0.002 Sum_probs=12.2
Q ss_pred eccceEEEEEECCCC
Q 046366 96 RPFDKVWRQFRMPMS 110 (128)
Q Consensus 96 r~~g~F~R~~~LP~~ 110 (128)
..+|.|+-++++|..
T Consensus 66 f~yG~~ear~k~~~~ 80 (212)
T cd02175 66 YGYGRYEVRMKPAKG 80 (212)
T ss_pred EEeeEEEEEEEcCCC
Confidence 468999999999853
No 90
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=22.91 E-value=4.3e+02 Score=21.71 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=45.9
Q ss_pred eEEEEEEeCC-------CCCCceEEEEeCCEEEE-EeecCceEEEEeeccceEEEEEECCC-----CccccceEEEEeCC
Q 046366 57 SHVITLDIPR-------MKKDDVKIEVEENRVLR-EEVEGEKWHRAERPFDKVWRQFRMPM-----SADLDHVKAHLENG 123 (128)
Q Consensus 57 ~~~i~~dlPG-------v~kedI~V~v~~~~l~i-~~~~~~~~~~~Er~~g~F~R~~~LP~-----~vd~~~I~A~~~nG 123 (128)
...-++++|+ ..+....++.++..+.| .-.............++|-+.+.+|. ....+...+-+.||
T Consensus 78 ~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 78 SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTS
T ss_pred cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCC
Confidence 5677889995 34566777777777777 33444455555566678899999983 23445677777887
Q ss_pred -EEEE
Q 046366 124 -VLRI 127 (128)
Q Consensus 124 -vL~I 127 (128)
+++|
T Consensus 158 sl~~v 162 (342)
T PF06433_consen 158 SLLTV 162 (342)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 4444
No 91
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=21.64 E-value=62 Score=21.66 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.4
Q ss_pred ceEEEEeCCEEEEC
Q 046366 115 HVKAHLENGVLRIT 128 (128)
Q Consensus 115 ~I~A~~~nGvL~It 128 (128)
.+.+.+.+|||+|+
T Consensus 26 d~D~e~~~gVLti~ 39 (102)
T TIGR03421 26 DIDCERAGGVLTLT 39 (102)
T ss_pred CeeeecCCCEEEEE
Confidence 36788899999985
No 92
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=20.72 E-value=2.1e+02 Score=17.35 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.8
Q ss_pred CCCceEEEEeCCEEEEEee
Q 046366 68 KKDDVKIEVEENRVLREEV 86 (128)
Q Consensus 68 ~kedI~V~v~~~~l~i~~~ 86 (128)
+++.++|..+|..+.|...
T Consensus 12 S~~~i~V~Y~G~pV~Iq~v 30 (59)
T PRK01625 12 SSSRIDVTYEGVPVWIESC 30 (59)
T ss_pred CCcceEEEECCEEEEEEEE
Confidence 6889999999999999443
No 93
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=20.20 E-value=2.2e+02 Score=21.65 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=22.9
Q ss_pred EEEeCCEEEEEeec--------CceEEE------EeeccceEEEEEECCCC
Q 046366 74 IEVEENRVLREEVE--------GEKWHR------AERPFDKVWRQFRMPMS 110 (128)
Q Consensus 74 V~v~~~~l~i~~~~--------~~~~~~------~Er~~g~F~R~~~LP~~ 110 (128)
|.++++.|.|+... ...+.. ....+|.|+-++++|..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 56678888883221 112222 23367999999999953
Done!