RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046366
(128 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 96.6 bits (241), Expect = 6e-27
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 35/131 (26%)
Query: 33 LYTRSPFFDVMFPMTEDPFR---------------------------ETPTSHVITLDIP 65
+ RS FD + DPF ETP +HV D+P
Sbjct: 3 IVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP 62
Query: 66 RMKKDDVKIEVEENRVLR--------EEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVK 117
+KK++VK+EVE+ VL +E + +KWHR ER K R+FR+ A ++ VK
Sbjct: 63 GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 118 AHLENGVLRIT 128
A LENGVL +T
Sbjct: 123 AGLENGVLTVT 133
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 94.5 bits (236), Expect = 1e-26
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEEN-------RVLREEVEGEKWHRAERPFDKVWRQ 104
+E V+ D+P + +++++++ R E E++ R ER + R+
Sbjct: 10 KEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRR 69
Query: 105 FRMPMSADLDHVKAHLENGVLRIT 128
F +P SAD D + A NGVL I
Sbjct: 70 FALPDSADADGITAAGRNGVLEIR 93
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 80.4 bits (199), Expect = 7e-21
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLR----EEVEGEKWHRAERPFDKVWRQFRM 107
E V+ D+ K+ +K V L E+ + V + R+
Sbjct: 30 YEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRL 89
Query: 108 PMSADLD-HVKAHLENGVLRIT 128
P + D + ENGVL I
Sbjct: 90 PYNVAKDAEISGKYENGVLTIR 111
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 75.9 bits (187), Expect = 8e-19
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEENRV-------LREEVEGEKWHRAE-RPFDKVWR 103
E + +P + K+D+ + + + E E+ +E ++++R
Sbjct: 62 IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYR 121
Query: 104 QFRMPMSADLDHVKAHLENGVLRIT 128
++P + ++ A ENGVL +
Sbjct: 122 TIKLPATVKEENASAKFENGVLSVI 146
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.8 bits (148), Expect = 1e-13
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 53 ETPTSHVITLDIPRMKKDDVKIEVEENRVL---REEVEGEKWHRAERPFDKVWRQFRMPM 109
T ++LD+ D++ ++ ++ V + ++ R F R++ +P
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCF---TRKYTLPP 60
Query: 110 SADLDHVKAHL-ENGVLRIT 128
D V + L G L +
Sbjct: 61 GVDPTQVSSSLSPEGTLTVE 80
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 61.3 bits (149), Expect = 1e-13
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLRE---EVEGEKWHRAERPFDKVWRQFRMP 108
P + LD+ +++ ++V + V E ++ R F R++R+P
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREF---HRRYRLP 63
Query: 109 MSADLDHVKAHL-ENGVLRIT 128
D V + L GVL I
Sbjct: 64 PGVDPAAVTSALSPEGVLSIQ 84
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 58.3 bits (141), Expect = 2e-12
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVL---REEVEGEKWHRAERPFDKVWRQFRMP 108
R VI LD+ +D+ ++V+E+ V + + R F R++R+P
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREF---HRRYRLP 64
Query: 109 MSADLDHVKAHL-ENGVLRIT 128
+ D + L +G+L +
Sbjct: 65 SNVDQSALSCSLSADGMLTFS 85
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 55.5 bits (134), Expect = 1e-11
Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 59 VITLDIPRMKKDDVKIEVEENRVL---REEVEGEKWHRAERPFDKVWRQFRMPMSADLDH 115
+ LD+ +++K++V + + + E ++ R F R++R+P D
Sbjct: 9 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF---HRKYRIPADVDPLT 65
Query: 116 VKAHL-ENGVLRIT 128
+ + + +GVL +
Sbjct: 66 ITSSMSSDGVLTVN 79
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 51.9 bits (124), Expect = 2e-09
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 34 YTRSPFFDVMFPMTEDPF---RETPTSHVITLDIPRMKKDDVKIEVEENRVL---REEVE 87
Y R P F + R + LD+ +++K++V + + + E
Sbjct: 48 YLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 107
Query: 88 GEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL-ENGVLRIT 128
++ R F R++R+P D + + L +GVL +
Sbjct: 108 QDEHGFISREF---HRKYRIPADVDPLTITSSLSSDGVLTVN 146
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 46.7 bits (110), Expect = 3e-07
Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 22 MNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRV 81
+ + + + + + H+ P DVK+ + N+V
Sbjct: 200 EKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKV 259
Query: 82 L---REEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128
E + + + + ++ F P D +A + +G++ +
Sbjct: 260 YVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVE 309
Score = 43.7 bits (102), Expect = 4e-06
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 59 VITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVW--RQFRMPMSADLDHV 116
+ ++ K +++ I+ ++N++ V +K R +P S D +H+
Sbjct: 115 KVYFNVKNFKAEEITIKADKNKL---VVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHI 171
Query: 117 KAHL-ENGVLRI 127
+A + + VL I
Sbjct: 172 QATITTDDVLVI 183
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.003
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 19/74 (25%)
Query: 43 MFPMTEDPFRETPTSHVITLDI----PRMKKDDVKIEVEENR---VLRE--EVEGEKW-- 91
M MT + + L+I P K KI + V V +K
Sbjct: 1 M--MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58
Query: 92 HRAERPFDKVWRQF 105
R+E WR F
Sbjct: 59 TRSE------WRTF 66
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 26.3 bits (58), Expect = 3.2
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 25/90 (27%)
Query: 2 MAKSRILAMAMLFLVMAATLMNMASQVN-----------ALMLYTRSPFFD--------- 41
M++ + A+ L L A+ + L+ + D
Sbjct: 1 MSRPLLFALTALSLTAASLAHAADKKAADKPAPSAVSKADKALHDKFLTLDTHLDTPAHF 60
Query: 42 --VMFPMTEDPFRETPTSHVITLDIPRMKK 69
+ + + E S V D+PRM +
Sbjct: 61 GRPGWDIADHHEVEHDFSQV---DLPRMNQ 87
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 25.6 bits (56), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 53 ETPTSHVITLDIPRMKKDDVKIEVEENRV 81
+T + VITL I ++K+DV +E E +
Sbjct: 16 QTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 25.2 bits (55), Expect = 3.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 53 ETPTSHVITLDIPRMKKDDVKIEVEENRV 81
+ P V+T+ + K +V I+ E +
Sbjct: 9 QKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 25.8 bits (57), Expect = 4.8
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 6 RILAMAMLFLV-------MAATLMNMASQVNALML--YTRSPFFDVMFPMTEDPFRETPT 56
++ A+A + V + SQ N SP + P+ D F + P
Sbjct: 310 KVAALAAAYDVPVVPHASGPYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPI 369
Query: 57 SHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFD 99
L + K + + + + E P +
Sbjct: 370 PTKGYLTTADLDKPGFGLTINPAARAKLIPSDYLFKVPEIPQN 412
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, EFI, enzyme function initiative,
metal protein; HET: MSE; 1.50A {Paracoccus
denitrificans} PDB: 3n4e_A*
Length = 393
Score = 25.7 bits (57), Expect = 5.7
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 27/113 (23%)
Query: 6 RILAMAMLF------------LVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRE 53
+ A+A + A + +++ ++ + FR
Sbjct: 283 QCAALAHAHGVEFVPHQTQPGVGHFANIHVLSTLMHMTKPV----ELADRWDRGRPVFRN 338
Query: 54 TPT---SHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWR 103
H D P + I V+E+ + E P
Sbjct: 339 PAEPVDGHFALGDAP-----GLGIVVDEDELASRATEITVGRDQRPP---AGG 383
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.15.1.3
Length = 134
Score = 25.0 bits (54), Expect = 6.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 55 PTSHVITLDIPRMKKDDVKIEVEENRV 81
P S V+ + + + +D ++ E
Sbjct: 29 PDSVVVHVYVKEICRDTSRVLFREQDF 55
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 25.1 bits (56), Expect = 7.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 70 DDVKIEVEENRVLREEVEGEKWHRA 94
D+ I VE N + EK HRA
Sbjct: 38 PDMTITVEGNVITVTRPSDEKHHRA 62
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G*
2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G*
2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 24.8 bits (55), Expect = 7.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 70 DDVKIEVEENRVLREEVEGEKWHRA 94
D V+++ +N + +G A
Sbjct: 38 DAVEVKHADNTLTFGPRDGYADGWA 62
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 24.8 bits (55), Expect = 8.6
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 70 DDVKIEVEENRVLREEVEGEKWHRA 94
++ + + +++L E + HRA
Sbjct: 39 TELTVRQDGDQLLVERPSDAQKHRA 63
>1wx1_A Nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase; structural genomics; 1.97A
{Thermus thermophilus HB8} PDB: 1j33_A
Length = 335
Score = 24.8 bits (55), Expect = 8.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 9 AMAMLFLVMAATLMNMAS 26
+AM L AA +++MA+
Sbjct: 309 VLAMPLLRAAARILHMAT 326
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 25.1 bits (55), Expect = 8.8
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 52 RETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSA 111
++ + +TL P + D + V + + W F
Sbjct: 269 KKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFM-ASGP 327
Query: 112 DLDHVKAHLENGVLRI 127
LD + ++ G +R
Sbjct: 328 CLDDIAELVDAGKIRP 343
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 24.8 bits (55), Expect = 9.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 70 DDVKIEVEENRVLREEVEGEKWHRA 94
++++ VEE V E E+ H++
Sbjct: 39 PEMRVVVEEGVVRVERPSDERRHKS 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.135 0.396
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,001,233
Number of extensions: 112734
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 40
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)