RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046366
         (128 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 52  RETPTSHVITLDIPRMKKDDVKIEVEENRVL--------REEVEGEKWHRAERPFDKVWR 103
            E      +   +P + K+D+ +    + +                  +      ++++R
Sbjct: 16  IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYR 75

Query: 104 QFRMPMSADLDHVKAHLENGVLRIT 128
             ++P +   ++  A  ENGVL + 
Sbjct: 76  TIKLPATVKEENASAKFENGVLSVI 100


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 45/128 (35%), Positives = 58/128 (45%), Gaps = 35/128 (27%)

Query: 36  RSPFFDVMFPMTEDPFR---------------------------ETPTSHVITLDIPRMK 68
           RS  FD    +  DPF                            ETP +HV   D+P +K
Sbjct: 5   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 69  KDDVKIEVEENRVLREEVEGEK--------WHRAERPFDKVWRQFRMPMSADLDHVKAHL 120
           K++VK+EVE+  VL    E  K        WHR ER   K  R+FR+   A ++ VKA L
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 124

Query: 121 ENGVLRIT 128
           ENGVL +T
Sbjct: 125 ENGVLTVT 132


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
          USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.9 bits (59), Expect = 0.49
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 49 DPFRETPTSHVITLDIPRMKKDDVKIEVEENRV 81
          D + + P S V+ + +  + +D  ++   E   
Sbjct: 23 DSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 26.4 bits (58), Expect = 0.55
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 53  ETPTSHVITLDIPRMKKDDVKIEVEENR--VLREEVEGEKWHRAERPFDKVWRQFRMPMS 110
           +T +  VITL I  ++K+DV +E  E     L +   GE ++        +         
Sbjct: 9   QTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI--------- 59

Query: 111 ADLDHVKAHLENGVLRIT 128
              +     + +  + I 
Sbjct: 60  -IPEQSTFKVLSTKIEIK 76


>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 78

 Score = 24.2 bits (52), Expect = 2.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 18/51 (35%)

Query: 51  FRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKV 101
           FRE     V +L IP+               LR EVEGE+   AER F+++
Sbjct: 40  FREVEPLKVGSLSIPQ---------------LRVEVEGEE---AERWFERI 72


>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor
          (Phoshphoinositide phosphatase), C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 24.5 bits (53), Expect = 3.5
 Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 6/45 (13%)

Query: 38 PFFDVM------FPMTEDPFRETPTSHVITLDIPRMKKDDVKIEV 76
          P F V       +     P R            P     D+K+E 
Sbjct: 26 PQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEF 70


>d1j33a_ c.39.1.1 (A:) Nicotinate
           mononucleotide:5,6-dimethylbenzimidazole
           phosphoribosyltransferase (CobT) {Thermus thermophilus
           [TaxId: 274]}
          Length = 333

 Score = 24.5 bits (53), Expect = 4.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 9   AMAMLFLVMAATLMNMAS 26
            +AM  L  AA +++MA+
Sbjct: 307 VLAMPLLRAAARILHMAT 324


>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 369

 Score = 24.3 bits (52), Expect = 6.0
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 48  EDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRM 107
                    +H    +IP+++   V  +        +    +   R     D V R  RM
Sbjct: 39  RANLTTLAGTHT---NIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRM 95


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 23.6 bits (51), Expect = 9.6
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query: 40 FDVMFPMTED---PFRETPTSHVITLDIPRM 67
          F+  FP T D    F     + V T DI  M
Sbjct: 38 FENCFPNTLDTTVHFDGKEDTFVYTGDIHAM 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,162
Number of extensions: 20682
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 14
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)