Query 046367
Match_columns 260
No_of_seqs 119 out of 752
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0830 UreF Urease accessory 100.0 2.1E-64 4.5E-69 443.2 24.9 224 34-260 2-229 (229)
2 PF01730 UreF: UreF; InterPro 100.0 8.1E-34 1.8E-38 234.8 17.0 142 69-220 1-146 (146)
3 COG3474 Cytochrome c2 [Energy 66.4 3.5 7.5E-05 33.8 1.5 59 22-83 41-100 (135)
4 PRK13666 hypothetical protein; 59.2 49 0.0011 25.4 6.4 47 181-228 43-89 (92)
5 PRK11906 transcriptional regul 57.0 1.4E+02 0.003 29.5 10.9 81 124-207 316-406 (458)
6 PF07408 DUF1507: Protein of u 56.5 29 0.00063 26.5 4.9 46 181-227 41-86 (90)
7 PTZ00405 cytochrome c; Provisi 46.1 15 0.00032 29.2 1.9 27 54-83 56-82 (114)
8 PF14748 P5CR_dimer: Pyrroline 36.0 1.4E+02 0.0031 23.0 6.1 43 184-227 16-58 (107)
9 COG4838 Uncharacterized protei 33.0 67 0.0015 24.1 3.5 44 181-225 43-86 (92)
10 PF13959 DUF4217: Domain of un 26.9 24 0.00053 24.9 0.3 16 48-63 44-59 (65)
11 PF02163 Peptidase_M50: Peptid 22.6 1.9E+02 0.004 24.1 5.0 37 185-221 124-160 (192)
12 cd06160 S2P-M50_like_2 Unchara 22.1 1.7E+02 0.0036 25.1 4.6 30 191-220 119-148 (183)
No 1
>COG0830 UreF Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-64 Score=443.19 Aligned_cols=224 Identities=26% Similarity=0.311 Sum_probs=212.8
Q ss_pred cCchHHHHHHHhccCCCChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhcC---CChhhHHH
Q 046367 34 VELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATTS---PDLETWHK 109 (260)
Q Consensus 34 ~~~~~~l~LlqL~DsafPiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~~---~d~~~l~~ 109 (260)
+++..+++||||+||+||||+|+||+|||+||++|+|+|.++|++|++.+|.+ ....|.++++++|++ +|.+++.+
T Consensus 2 ~~~~~ll~ll~l~dsafPvGafs~S~GLEtai~~g~V~d~~tl~~wl~~~L~~~~~~~d~~~l~~~~~a~~~~d~~~~~~ 81 (229)
T COG0830 2 PSMTSLLRLLQLADSAFPVGAFSYSFGLETAIQAGIVTDAATLEAWLKTQLNQGLLYNDALLLALAYRALLDDDAEALLE 81 (229)
T ss_pred CcHHHHHHHHHhcCccCCcccccccccHHHHHHcCccCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccHHHHHH
Confidence 35677999999999999999999999999999999999999999999999987 788899999998884 56778889
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHH
Q 046367 110 LDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMF 189 (260)
Q Consensus 110 ld~~l~A~~~~~e~R~aS~~~G~~ll~l~~~l~~~~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly 189 (260)
+|+++.+++.++|.|++|++||++|++++..++++ +. .+|.+.++.++.++ ||||+||++++++||++++++.+|+|
T Consensus 82 ~d~~~~a~~~~rE~R~~s~~mG~~l~~l~~~~~~~-~~-~~~~e~i~~~~~~~-~~ava~g~va~~~gi~~~~al~a~ly 158 (229)
T COG0830 82 ADELLFAQKLARELREESRRMGRALLKLARALWED-DP-SAWLERIPQKKAPG-HYAVAFGVVAAALGIDLEDALLAFLY 158 (229)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHhccC-Cc-HHHHHHhcccCCCC-cchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999875 33 77999999888887 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCChhhhhcccHHHHHHHhccccccccccCC
Q 046367 190 ITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260 (260)
Q Consensus 190 ~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~~~~~~~~l~~~~P~ldias~~He~l~sRLF~S 260 (260)
++++|+|+|||||+||||++||+|++++.|.|...++++...+++|+|+++|++||++|+||++|||||||
T Consensus 159 a~~~~lv~aavRlipLgQ~~gq~il~~l~~~~~~~~~~~~~~~~~dl~s~~p~ldi~am~HEt~~sRLF~S 229 (229)
T COG0830 159 AWASNLVSAAVRLIPLGQLDGQKILAQLEPLIEAAAEQAALLDLDDLGSAAPGLDIAAMRHETQYSRLFRS 229 (229)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHhhHHHHHHHHHHHhCCHHHhhcccHHHHHHHHHHhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF01730 UreF: UreF; InterPro: IPR002639 This family consists of the urease accessory protein, UreF. The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid []. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein [].; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_A 3CXN_B 2WGL_A 3O1Q_B.
Probab=100.00 E-value=8.1e-34 Score=234.84 Aligned_cols=142 Identities=26% Similarity=0.375 Sum_probs=121.7
Q ss_pred CCCCHHHHHHHHHHHHH-HhhhcHHHHHHHhhcC---CChhhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccC
Q 046367 69 LISSPDDLRTYVIHILE-NTGSLLLPFVCTATTS---PDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTE 144 (260)
Q Consensus 69 ~V~d~~~l~~~l~~~L~-~~~~~~~~~~~~a~~~---~d~~~l~~ld~~l~A~~~~~e~R~aS~~~G~~ll~l~~~l~~~ 144 (260)
+|+|.+++++||+++|. +...+|++++..+|++ +|.+.+.++|+++.++++++|.|++|++||++|++++++
T Consensus 1 ~V~d~~~l~~~l~~~L~~~~~~~d~~~l~~a~~a~~~~d~~~l~~ld~~l~A~~~~~e~R~as~~~G~~ll~~~~~---- 76 (146)
T PF01730_consen 1 WVRDAESLKDWLRDYLRHGLARFDLPALAAAYRAAKAGDLEALAELDRLLDASKLSRELREASRQMGRALLRLARE---- 76 (146)
T ss_dssp SS-SHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHH----
T ss_pred CcCCHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH----
Confidence 69999999999999999 5899999999998874 789999999999999999999999999999999999886
Q ss_pred chhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 046367 145 VPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFV 220 (260)
Q Consensus 145 ~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~ 220 (260)
+|.+.+.++...| |||||||++++.+||++++++.+|+|++++|+|+|||||+||||++||++|+++.|.
T Consensus 77 -----~~~~~~~~~~~~~-~~~vv~g~~~~~~gi~~~~a~~~~l~~~~~~~vsAavRL~plGq~~gQ~~L~~L~p~ 146 (146)
T PF01730_consen 77 -----EYLDAVAEGQAPG-HYPVVFGLVAAALGIDLEQALLAYLYSWASNLVSAAVRLIPLGQTEGQRILAQLQPA 146 (146)
T ss_dssp -----HHHHHHHHH-SS---HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHTHH-
T ss_pred -----HHHHHHHhcCCCC-cHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence 3566677777777 999999999999999999999999999999999999999999999999999999883
No 3
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=66.45 E-value=3.5 Score=33.83 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=37.2
Q ss_pred hhhcccccccccc-CchHHHHHHHhccCCCChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHHH
Q 046367 22 ANVSHGKEKQASV-ELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHI 83 (260)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~l~LlqL~DsafPiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~ 83 (260)
.+.=|+-.++-.. --+.||-..==.-...+ +|+||.+|-.+ ..|.|=|.+.|.+||..=
T Consensus 41 C~~CH~i~~~g~nkvGP~L~gVvGR~ags~e--gf~YS~Amk~~-~~g~vWd~~~L~~fL~~P 100 (135)
T COG3474 41 CQACHSIEKGGPNKVGPHLWGVVGRPAGSVE--GFSYSAAMKKA-GGGIVWDEDNLDEFLTAP 100 (135)
T ss_pred HHHhhccccCCCCCCCCccccccCccccccC--CcccCHHHHhc-cCCcccCHHHHHHHHhCh
Confidence 3445666666222 22223333221112222 79999999999 888999999999998753
No 4
>PRK13666 hypothetical protein; Provisional
Probab=59.21 E-value=49 Score=25.36 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKW 228 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~ 228 (260)
++.+.+-+|+. +-.|.=|||++-+...+|.+++.+|...+.++.+..
T Consensus 43 EEVlDTQmfGl-SreVdFAvrlgli~~~~Gk~ll~~LE~~Ls~L~~a~ 89 (92)
T PRK13666 43 EEVLDTQMFGL-SREVDFAVRLGLIDEEEGKQLLSRLERELSALHEAF 89 (92)
T ss_pred HHHHHHHHhhh-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667765 346788999999999999999999999888776643
No 5
>PRK11906 transcriptional regulator; Provisional
Probab=56.96 E-value=1.4e+02 Score=29.51 Aligned_cols=81 Identities=7% Similarity=-0.050 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH---------
Q 046367 124 RKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRD--------- 194 (260)
Q Consensus 124 R~aS~~~G~~ll~l~~~l~~~~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly~~~~~--------- 194 (260)
++..+.-|.++.+.+-++.+.++........+..- .+ ++.++.+++-+++-+.+..+..-|.++++..
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~--~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGL--SG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--hc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 55667778888877777766544333222221111 23 6999999999999999999999999999543
Q ss_pred -HHHHHHhhhcCCh
Q 046367 195 -IISAATRLNLVGP 207 (260)
Q Consensus 195 -lvsAAvRL~plGq 207 (260)
.+..|+||.|.--
T Consensus 393 ~~i~~alrLsP~~~ 406 (458)
T PRK11906 393 ICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHhccCchhh
Confidence 5667777777643
No 6
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=56.51 E-value=29 Score=26.49 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKK 227 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~ 227 (260)
++.+.+-+|++- --|.=|||++-+...+|+.|+.+|...+..+.+.
T Consensus 41 EEVlDTQmyGlS-reIdFAVrlgli~~~~Gk~ll~~LE~~Ls~Ly~~ 86 (90)
T PF07408_consen 41 EEVLDTQMYGLS-REIDFAVRLGLISEEEGKQLLSELERELSQLYEA 86 (90)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTSS-HHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhHHhchh-HHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777764 4678899999999999999999998877655443
No 7
>PTZ00405 cytochrome c; Provisional
Probab=46.14 E-value=15 Score=29.17 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.9
Q ss_pred hhhhhhhHHHHHHcCCCCCHHHHHHHHHHH
Q 046367 54 GFAHSFGLEAAIQARLISSPDDLRTYVIHI 83 (260)
Q Consensus 54 ~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~ 83 (260)
+|.||..|. ..|++-|.+.|..||.+-
T Consensus 56 ~~~YS~al~---~~g~~wd~~~L~~~l~~P 82 (114)
T PTZ00405 56 GFAYSKANA---DSGVIWTPEVLDVYLENP 82 (114)
T ss_pred CccccHHHH---hccCcCCHHHHHHHHHCH
Confidence 799998875 569999999999998764
No 8
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=36.03 E-value=1.4e+02 Score=22.98 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 046367 184 QRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKK 227 (260)
Q Consensus 184 l~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~ 227 (260)
--+|+|.++..++.++++.+ |..-+++++..+..--..+++++
T Consensus 16 gpA~~~~~~eal~~a~v~~G-l~~~~A~~lv~~t~~G~a~ll~~ 58 (107)
T PF14748_consen 16 GPAYFFLFIEALADAAVAQG-LPREEARKLVAQTFIGAAKLLEE 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 45899999999999999955 88999999887776666666653
No 9
>COG4838 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.98 E-value=67 Score=24.10 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAML 225 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~ 225 (260)
++.+..-+|+.- -=+.=||||+.+...+|-+++..+...+.++-
T Consensus 43 EEVLDTQMfGLs-rEidFAvrLgLid~e~GKqll~~LEkeLs~LH 86 (92)
T COG4838 43 EEVLDTQMFGLS-REIDFAVRLGLIDEEDGKQLLSTLEKELSALH 86 (92)
T ss_pred HHHHHHHHhhhh-hhhhHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 344444445432 34567999999999999999999988776543
No 10
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=26.90 E-value=24 Score=24.90 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=13.6
Q ss_pred CCCChhhhhhhhhHHH
Q 046367 48 SILPTGGFAHSFGLEA 63 (260)
Q Consensus 48 safPiG~Fa~S~GLE~ 63 (260)
..++.|.+|+|+||..
T Consensus 44 ~~L~l~~~A~sfGL~~ 59 (65)
T PF13959_consen 44 KKLDLGHLAKSFGLLE 59 (65)
T ss_pred ccCCHHHHHHHcCCCC
Confidence 4679999999999963
No 11
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=22.58 E-value=1.9e+02 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 046367 185 RAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVA 221 (260)
Q Consensus 185 ~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i 221 (260)
..+.+...-|+..+.+=|+|+.+.||.+++..+.+.+
T Consensus 124 ~~~~~~~~~n~~l~~~NllPi~~lDG~~il~~l~~~~ 160 (192)
T PF02163_consen 124 EFLFFFAWLNFILALFNLLPIPPLDGGRILRALLEMI 160 (192)
T ss_dssp EHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhhcccCCcCCHHHHHHHHHHHH
Confidence 4445666778888999999999999999999887433
No 12
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=22.06 E-value=1.7e+02 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 046367 191 TLRDIISAATRLNLVGPLGAAVLQHQIAFV 220 (260)
Q Consensus 191 ~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~ 220 (260)
..-|++-+..=|.|++|.||-|++..+.+.
T Consensus 119 ~~~nl~l~~fNLLPi~PLDGGril~~~l~~ 148 (183)
T cd06160 119 GWVGLLVTALNLLPVGQLDGGHIVRALFGR 148 (183)
T ss_pred HHHHHHHHHHHhCCCCCcChHHHHHHHhCH
Confidence 446888899999999999999999988765
Done!