Query 046367
Match_columns 260
No_of_seqs 119 out of 752
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cxn_A Urease accessory protei 100.0 5.9E-63 2E-67 445.9 22.7 218 40-260 53-274 (274)
2 1vyd_A Cytochrome C2; electron 47.8 11 0.00037 28.5 2.6 30 53-82 49-78 (116)
3 2gbo_A UPF0358 protein EF2458; 46.0 40 0.0014 25.3 5.3 47 181-228 44-90 (104)
4 2odm_A YLAN, UPF0358 protein M 42.2 58 0.002 23.9 5.6 43 181-224 42-84 (91)
5 1cxc_A Cytochrome C2; electron 28.1 34 0.0012 25.8 2.6 29 54-82 53-82 (124)
6 2bh4_X Cytochrome C-550; C-typ 26.4 31 0.0011 26.5 2.0 30 53-82 51-82 (134)
7 155c_A Cytochrome C550; electr 23.8 27 0.00091 27.0 1.2 29 54-82 52-82 (135)
8 1c2n_A Cytochrome C2; electron 19.4 36 0.0012 26.0 1.1 29 54-82 71-99 (137)
9 3b4r_A Putative zinc metallopr 15.3 1.7E+02 0.0058 24.4 4.5 32 189-220 128-159 (224)
10 2zzd_C Thiocyanate hydrolase s 13.5 1.7E+02 0.0058 25.1 3.9 45 60-105 33-78 (243)
No 1
>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET: MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A 3sf5_A
Probab=100.00 E-value=5.9e-63 Score=445.91 Aligned_cols=218 Identities=17% Similarity=0.233 Sum_probs=184.7
Q ss_pred HHHHHhccCCCChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhc---CCChhhHHHHHHHHH
Q 046367 40 WSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATT---SPDLETWHKLDRMLD 115 (260)
Q Consensus 40 l~LlqL~DsafPiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~---~~d~~~l~~ld~~l~ 115 (260)
|+||||+||+||||+|+||+|||+||++|+|+|.+++++||+++|++ ...+|++++..+|+ .+|.+.|.+||+++.
T Consensus 53 l~LlqL~DsalPvGaFayS~GLE~av~~G~V~d~~sl~~wL~~~L~~~~~~~d~~~l~~a~~a~~~~d~~~l~~ld~~l~ 132 (274)
T 3cxn_A 53 FLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEVIM 132 (274)
T ss_dssp HHHHHHHSTTSSSCCCSTHHHHHHHHHTTSCCSHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcchhHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999986 68899998887776 578999999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 046367 116 ATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDI 195 (260)
Q Consensus 116 A~~~~~e~R~aS~~~G~~ll~l~~~l~~~~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly~~~~~l 195 (260)
|+++++|.|++|++||++|++++.+++++ + +.+|.+.++.+...+ ||||+||++|+.+||++++++.+|+|++++|+
T Consensus 133 A~~~s~E~R~aS~~~G~aLl~l~~~l~~~-~-~~~~~~~~~~~~~~~-~~pva~g~~a~~~gi~~~~a~~~yl~~~~~n~ 209 (274)
T 3cxn_A 133 LSTSPMELRLANQKLGNRFIKTLQAMNEL-D-MGEFFNAYAQKTKDP-THATSYGVFAASLGIELKKALRHYLYAQTSNM 209 (274)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHCTTC-C-CHHHHHHHHHHCSSC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHccc-h-hHHHHHHHhcccCCC-chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998864 2 346777776666666 99999999999999999999999999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCChhhhhcccHHHHHHHhccccccccccCC
Q 046367 196 ISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260 (260)
Q Consensus 196 vsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~~~~~~~~l~~~~P~ldias~~He~l~sRLF~S 260 (260)
|+|||||+||||++||+||.++.|.|+++++++.+.++||+|+++|++||++|+||++|+|||||
T Consensus 210 vsAAVRL~pLGq~~gQ~iL~~L~~~i~~~~~~a~~~~~ddlg~~aP~ldIas~rHE~~ysRLFrS 274 (274)
T 3cxn_A 210 VINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCTASVQNDIKAMQHESLYSRLYMS 274 (274)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTHHHHHHHHHHHHHCCGGGTTCC---------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcchHHHHHHHHhcccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 2
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=47.80 E-value=11 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=26.2
Q ss_pred hhhhhhhhHHHHHHcCCCCCHHHHHHHHHH
Q 046367 53 GGFAHSFGLEAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 53 G~Fa~S~GLE~av~~g~V~d~~~l~~~l~~ 82 (260)
-+|.||-.|..+-+.|++-|.+.|.+||.+
T Consensus 49 ~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~ 78 (116)
T 1vyd_A 49 PEFKYKDSIVALGASGFAWTEEDIATYVKD 78 (116)
T ss_dssp TTCCCCHHHHHHHHTTCBCCHHHHHHHHHC
T ss_pred cccccCHHHHhhcccCccCCHHHHHHHHHC
Confidence 479999999877779999999999999875
No 3
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein STRU initiative, midwest center for structural genomics; 2.20A {Enterococcus faecalis} SCOP: a.23.6.1
Probab=46.04 E-value=40 Score=25.32 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKW 228 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~ 228 (260)
++.+.+-+|++- -.|.=|||++-+...+|++|+.+|...+..+...+
T Consensus 44 EEVlDTQmyGlS-rEIdFAVrlGli~~~~Gk~ll~~LE~~Ls~Lysea 90 (104)
T 2gbo_A 44 EEVVDTQMYGFS-RQVTYATRLGILTNDEGHRLLSDLERELNQLYTDV 90 (104)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTSSCHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhchH-HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778764 46788999999999999999999998887766333
No 4
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=42.17 E-value=58 Score=23.86 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAM 224 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~ 224 (260)
++.+.+-+|+.- --|.=|||++-+...+|+.|+.+|...+..+
T Consensus 42 EEVlDTQmfGlS-rEIdFAvrlGli~~~~Gk~ll~~LE~~Ls~L 84 (91)
T 2odm_A 42 EEVLDTQMFGLQ-KEVDFAVKLGLVDREDGKQIMLRLEKELSKL 84 (91)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhH-HHHHHHHHHCCccHHHHHHHHHHHHHHHHHH
Confidence 677777778764 4678899999999999999999998877543
No 5
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=28.13 E-value=34 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.2
Q ss_pred hh-hhhhhHHHHHHcCCCCCHHHHHHHHHH
Q 046367 54 GF-AHSFGLEAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 54 ~F-a~S~GLE~av~~g~V~d~~~l~~~l~~ 82 (260)
+| .||..|..+-+.|.+-|.+.|..||.+
T Consensus 53 g~~~ys~~l~~~~~~g~~w~~~~l~~~l~~ 82 (124)
T 1cxc_A 53 DFKGYGEGMKEAGAKGLAWDEEHFVQYVQD 82 (124)
T ss_dssp TCCCCCHHHHHHHHTTCBCCHHHHHHHHHC
T ss_pred cHHHhhHHHHhhhhcCccCCHHHHHHHHhC
Confidence 57 899999877789999999999999874
No 6
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=26.42 E-value=31 Score=26.52 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=24.4
Q ss_pred hhhhhhhhH--HHHHHcCCCCCHHHHHHHHHH
Q 046367 53 GGFAHSFGL--EAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 53 G~Fa~S~GL--E~av~~g~V~d~~~l~~~l~~ 82 (260)
-+|.||-.| ...-..|.+.+.+.|..||.+
T Consensus 51 ~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l~~ 82 (134)
T 2bh4_X 51 EGFKYGDGILEVAEKNPDMVWSEADLIEYVTD 82 (134)
T ss_dssp TTCCCCHHHHHHHHHCTTCBCCHHHHHHHHHC
T ss_pred ccccccHHHhhhhccccCccCCHHHHHHHHhC
Confidence 468899888 556668888999999999875
No 7
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=23.83 E-value=27 Score=27.00 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.3
Q ss_pred hhhhhhhH--HHHHHcCCCCCHHHHHHHHHH
Q 046367 54 GFAHSFGL--EAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 54 ~Fa~S~GL--E~av~~g~V~d~~~l~~~l~~ 82 (260)
+|.||-.| ..+-..|.+-+.+.|.+||.+
T Consensus 52 gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~~ 82 (135)
T 155c_A 52 GFKYGEGILEVAEKNPDLTWTEANLIEYVTD 82 (135)
T ss_dssp SSCCCHHHHHHHHHCSCCCCCSHHHHHHHHS
T ss_pred cccchHHHhhhhhccccccCCHHHHHHHHhC
Confidence 68899888 555668888898888888865
No 8
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=19.40 E-value=36 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.9
Q ss_pred hhhhhhhHHHHHHcCCCCCHHHHHHHHHH
Q 046367 54 GFAHSFGLEAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 54 ~Fa~S~GLE~av~~g~V~d~~~l~~~l~~ 82 (260)
+|.||..|-..-+.|.+-+.+.+.+||.+
T Consensus 71 ~~~ys~~l~~~~~~g~~w~~~~l~~~i~~ 99 (137)
T 1c2n_A 71 EFKYKDSIVALGASGFAWTEEDIATYVKD 99 (137)
T ss_dssp SCCCCHHHHHHHHTTCCCCHHHHHHHTTS
T ss_pred cccccHHHHhhhhcCccCCHHHHHHHHhC
Confidence 58899999777789999999999998874
No 9
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=15.27 E-value=1.7e+02 Score=24.43 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 046367 189 FITLRDIISAATRLNLVGPLGAAVLQHQIAFV 220 (260)
Q Consensus 189 y~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~ 220 (260)
+...-|++-+..=|+|+.|.||-+++..+.+.
T Consensus 128 ~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~ 159 (224)
T 3b4r_A 128 TLSLLNLMLGGFNLIPAFPMDGGRILRAILSK 159 (224)
T ss_dssp HHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence 44567999999999999999999999988776
No 10
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=13.54 E-value=1.7e+02 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=30.9
Q ss_pred hHHH-HHHcCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHhhcCCChh
Q 046367 60 GLEA-AIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLE 105 (260)
Q Consensus 60 GLE~-av~~g~V~d~~~l~~~l~~~L~~~~~~~~~~~~~a~~~~d~~ 105 (260)
-||+ .+++|+| +.+++..+++.+-...-..-..++++||..+++.
T Consensus 33 AL~~lL~eKGli-~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk 78 (243)
T 2zzd_C 33 AVRELAIEKGLF-SAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYK 78 (243)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHhccCCCCcceEEEeecCCHHHH
Confidence 3444 4567776 7788899888776554455666788999876543
Done!