Query 046367
Match_columns 260
No_of_seqs 119 out of 752
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 20:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jdla_ a.3.1.1 (A:) Cytochrom 53.7 2.7 0.0002 30.2 1.9 29 53-81 43-71 (118)
2 d1vyda_ a.3.1.1 (A:) Cytochrom 37.8 9 0.00066 27.0 2.6 31 52-82 48-78 (116)
3 d2gboa1 a.23.6.1 (A:1-82) Hypo 36.1 55 0.004 21.7 6.3 40 181-221 41-80 (82)
4 d2ahra1 a.100.1.10 (A:153-256) 21.9 1.1E+02 0.0081 20.6 6.9 32 185-217 14-45 (104)
5 d1yqga1 a.100.1.10 (A:153-263) 20.3 1.3E+02 0.0091 20.6 6.4 42 185-227 16-57 (111)
6 d1v29a_ d.149.1.1 (A:) Cobalt- 18.7 56 0.0041 25.5 4.2 43 61-104 22-66 (203)
7 d1qn2a_ a.3.1.1 (A:) Cytochrom 18.6 27 0.002 23.8 2.1 29 51-82 40-68 (99)
8 d1co6a_ a.3.1.1 (A:) Cytochrom 18.1 25 0.0018 24.4 1.8 28 53-83 43-70 (107)
9 d1ql3a_ a.3.1.1 (A:) Cytochrom 16.3 26 0.0019 23.9 1.4 29 53-84 41-69 (99)
10 d1ugpa_ d.149.1.1 (A:) Cobalt- 16.0 75 0.0054 24.7 4.3 43 61-104 23-67 (203)
No 1
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=53.68 E-value=2.7 Score=30.25 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=26.8
Q ss_pred hhhhhhhhHHHHHHcCCCCCHHHHHHHHH
Q 046367 53 GGFAHSFGLEAAIQARLISSPDDLRTYVI 81 (260)
Q Consensus 53 G~Fa~S~GLE~av~~g~V~d~~~l~~~l~ 81 (260)
-+|.||..+...-+.|++-|.+.|..||.
T Consensus 43 ~g~~Ys~~~~~~~~~g~~W~~e~L~~~l~ 71 (118)
T d1jdla_ 43 PGFNYSAINHAAGEAGLHWTPENIIAYLP 71 (118)
T ss_dssp TTCCCCHHHHHHHHTTCBCCHHHHHHHTT
T ss_pred ccccccHHHHHHHhcCccCCHHHHHHHHH
Confidence 47999999999999999999999999985
No 2
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=37.82 E-value=9 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=27.4
Q ss_pred hhhhhhhhhHHHHHHcCCCCCHHHHHHHHHH
Q 046367 52 TGGFAHSFGLEAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 52 iG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~ 82 (260)
..+|.||..+......+.+-|.+.|..||.+
T Consensus 48 ~~~~~~s~~~~~~~~~~~~w~~~~L~~~l~~ 78 (116)
T d1vyda_ 48 YPEFKYKDSIVALGASGFAWTEEDIATYVKD 78 (116)
T ss_dssp CTTCCCCHHHHHHHHTTCBCCHHHHHHHHHC
T ss_pred cccchhhhHHHHHHhcCccccHHHHHHHHHC
Confidence 3469999999999999999999999999853
No 3
>d2gboa1 a.23.6.1 (A:1-82) Hypothetical protein EF2458 {Enterococcus faecalis [TaxId: 1351]}
Probab=36.10 E-value=55 Score=21.69 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 046367 181 GTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVA 221 (260)
Q Consensus 181 ~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i 221 (260)
++.+.+-+|++- --|-=|||++.++..+|.+++.+|...+
T Consensus 41 EEVlDTQMfGls-rEidFAvrlgli~~~~Gk~ll~~LEreL 80 (82)
T d2gboa1 41 EEVVDTQMYGFS-RQVTYATRLGILTNDEGHRLLSDLEREL 80 (82)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcch-hhhhHHHHhccccHHHHHHHHHHHHHHh
Confidence 666777777764 4577899999999999999999987654
No 4
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}
Probab=21.90 E-value=1.1e+02 Score=20.62 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 046367 185 RAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217 (260)
Q Consensus 185 ~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l 217 (260)
-+|+|-++..++.++++.+ +...+++++..+.
T Consensus 14 PAf~~~~~ea~~~~~~~~G-l~~~~a~~l~~~t 45 (104)
T d2ahra1 14 PAYIYLFIEALAKAGVKNG-IPKAKALEIVTQT 45 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 3788888999999999887 7777777776554
No 5
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=20.27 E-value=1.3e+02 Score=20.59 Aligned_cols=42 Identities=26% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 046367 185 RAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKK 227 (260)
Q Consensus 185 ~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~ 227 (260)
-+|+|-++..++.++++.+ +...++.++..+..---.+.+.+
T Consensus 16 PAy~~~~~ea~~~~~~~~G-l~~~~a~~lv~~~~~Gs~~ll~~ 57 (111)
T d1yqga1 16 PAYVFYLLDALQNAAIRQG-FDMAEARALSLATFKGAVALAEQ 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999986 77888888776654444444433
No 6
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=18.73 E-value=56 Score=25.48 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHH-HHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhcCCCh
Q 046367 61 LEA-AIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATTSPDL 104 (260)
Q Consensus 61 LE~-av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~~~d~ 104 (260)
||+ .+++|+| +.+++..+++.+-.. .-..-+.++++||..+++
T Consensus 22 Le~LLieKGli-t~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~F 66 (203)
T d1v29a_ 22 LESLLIEKRLL-SSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEF 66 (203)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHH
Confidence 444 4567777 788999999888765 345566679999987655
No 7
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}
Probab=18.63 E-value=27 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=23.6
Q ss_pred ChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHH
Q 046367 51 PTGGFAHSFGLEAAIQARLISSPDDLRTYVIH 82 (260)
Q Consensus 51 PiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~ 82 (260)
.+.+|.||..| ...|++.+.+.|..||.+
T Consensus 40 ~~~~~~ys~~~---~~~~~~w~~~~L~~~l~~ 68 (99)
T d1qn2a_ 40 GADGYAFSDAL---KKSGLTWDQADLKQWLAD 68 (99)
T ss_dssp CTTTCCCCHHH---HHHCCBCCHHHHHHHHHC
T ss_pred ccCCccccHHH---HhcCccccHHHHHHHHHC
Confidence 35679999765 568999999999999874
No 8
>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=18.13 E-value=25 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHcCCCCCHHHHHHHHHHH
Q 046367 53 GGFAHSFGLEAAIQARLISSPDDLRTYVIHI 83 (260)
Q Consensus 53 G~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~ 83 (260)
.+|.||..| ...|.+-|.+.|..||.+=
T Consensus 43 ~~~~ys~al---~~~~~~w~~~~L~~~l~~P 70 (107)
T d1co6a_ 43 EGFAYSDAN---KNSGITWTEEVFREYIRDP 70 (107)
T ss_dssp TTCCCCHHH---HTSCCBCCHHHHHHHHHCH
T ss_pred cccccCHHH---hhccccCCHHHHHHHHhCh
Confidence 478888765 5789999999999998744
No 9
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=16.31 E-value=26 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=22.8
Q ss_pred hhhhhhhhHHHHHHcCCCCCHHHHHHHHHHHH
Q 046367 53 GGFAHSFGLEAAIQARLISSPDDLRTYVIHIL 84 (260)
Q Consensus 53 G~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~L 84 (260)
.+|.||..| ...|++-|.+.|..||.+--
T Consensus 41 ~~~~ys~~~---~~~~~~w~~~~L~~~l~~P~ 69 (99)
T d1ql3a_ 41 DGFNYSDPM---KAHGGDWTPEALQEFLTNPK 69 (99)
T ss_dssp TTCCCCHHH---HHHCSBCCHHHHHHHHHCHH
T ss_pred ccccccHHH---HhcccccCHHHHHHHHhChH
Confidence 457888654 67899999999999988653
No 10
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=15.99 E-value=75 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHH-HHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhcCCCh
Q 046367 61 LEA-AIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATTSPDL 104 (260)
Q Consensus 61 LE~-av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~~~d~ 104 (260)
||+ .+++|+| +.+++..+++.+-.. .-..-+.++++||..+++
T Consensus 23 le~lLieKGli-~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~F 67 (203)
T d1ugpa_ 23 LESMLIEQGIL-TTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEF 67 (203)
T ss_dssp HHHHHHHTTSC-CHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHH
Confidence 444 4677777 888999999988775 445566678899987654
Done!