Your job contains 1 sequence.
>046368
IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL
LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGG
SPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAVSG
VQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKL
KESEKAVYQEKALKDKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKL
DETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPAF
ELPKAEENAKDKNVENVSDDIVRNDMVE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046368
(388 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010587 - symbol:AT1G04880 species:3702 "Arabi... 991 7.1e-100 1
TAIR|locus:2199824 - symbol:AT1G76110 species:3702 "Arabi... 584 9.6e-57 1
TAIR|locus:2020517 - symbol:AT1G55650 species:3702 "Arabi... 320 7.6e-44 2
TAIR|locus:2088160 - symbol:AT3G13350 species:3702 "Arabi... 350 6.0e-32 1
UNIPROTKB|Q68CP9 - symbol:ARID2 "AT-rich interactive doma... 199 5.1e-12 3
UNIPROTKB|E1C9H0 - symbol:ARID2 "Uncharacterized protein"... 202 7.2e-12 3
ZFIN|ZDB-GENE-030131-6311 - symbol:arid2 "AT rich interac... 187 3.1e-11 3
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 151 3.8e-10 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 146 1.3e-09 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 146 1.3e-09 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 143 2.8e-09 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 143 2.8e-09 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 142 3.6e-09 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 142 3.6e-09 1
UNIPROTKB|K7EJ04 - symbol:ARID3A "AT-rich interactive dom... 142 3.6e-09 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 145 5.1e-09 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 144 1.3e-08 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 143 1.7e-08 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 143 1.7e-08 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 147 1.9e-08 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 143 2.0e-08 1
WB|WBGene00000476 - symbol:cfi-1 species:6239 "Caenorhabd... 157 2.1e-08 1
UNIPROTKB|E2RFL8 - symbol:ARID2 "Uncharacterized protein"... 164 2.4e-08 2
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 133 3.5e-08 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 133 3.5e-08 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 142 4.3e-08 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 132 4.5e-08 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 140 6.0e-08 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 130 7.3e-08 1
UNIPROTKB|G3MWU0 - symbol:ARID3C "Uncharacterized protein... 147 1.9e-07 1
UNIPROTKB|I3L5S4 - symbol:ARID3C "Uncharacterized protein... 143 2.0e-07 2
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 126 2.0e-07 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 137 2.0e-07 1
UNIPROTKB|F1MGP2 - symbol:ARID3C "Uncharacterized protein... 147 2.2e-07 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 125 2.6e-07 1
UNIPROTKB|H3BQ92 - symbol:ARID3B "AT-rich interactive dom... 125 2.6e-07 1
UNIPROTKB|F1SEC1 - symbol:ARID3C "Uncharacterized protein... 143 2.6e-07 2
UNIPROTKB|E2RGA0 - symbol:ARID3C "Uncharacterized protein... 144 4.7e-07 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 144 5.4e-07 1
MGI|MGI:3650624 - symbol:Arid3c "AT rich interactive doma... 143 6.0e-07 1
RGD|1560943 - symbol:Arid3c "AT rich interactive domain 3... 143 6.1e-07 1
UNIPROTKB|A6NKF2 - symbol:ARID3C "AT-rich interactive dom... 143 6.1e-07 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 121 7.0e-07 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 121 7.0e-07 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 124 8.2e-07 2
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 134 8.9e-07 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 134 8.9e-07 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 120 9.0e-07 1
ZFIN|ZDB-GENE-070209-182 - symbol:arid3b "AT rich interac... 138 1.0e-06 3
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 128 1.2e-06 1
UNIPROTKB|E1BGZ3 - symbol:ARID3A "Uncharacterized protein... 142 1.4e-06 1
UNIPROTKB|Q99856 - symbol:ARID3A "AT-rich interactive dom... 142 1.4e-06 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 124 1.4e-06 2
UNIPROTKB|F1S6T2 - symbol:ARID3A "Uncharacterized protein... 142 1.5e-06 1
MGI|MGI:1328360 - symbol:Arid3a "AT rich interactive doma... 142 1.5e-06 1
UNIPROTKB|F1PDC9 - symbol:ARID3A "Uncharacterized protein... 142 1.5e-06 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 132 1.6e-06 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 132 1.6e-06 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 132 1.6e-06 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 132 1.6e-06 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 132 1.6e-06 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 132 1.6e-06 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 132 1.6e-06 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 124 1.7e-06 2
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 124 1.7e-06 2
UNIPROTKB|I3L967 - symbol:ARID3B "Uncharacterized protein... 137 1.9e-06 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 117 1.9e-06 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 131 2.1e-06 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 131 2.1e-06 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 131 2.1e-06 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 131 2.1e-06 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 131 2.1e-06 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 131 2.1e-06 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 131 2.1e-06 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 116 2.4e-06 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 116 2.4e-06 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 130 2.7e-06 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 122 2.7e-06 2
UNIPROTKB|E2RFI5 - symbol:ARID3B "Uncharacterized protein... 139 2.8e-06 1
RGD|1306335 - symbol:Arid3b "AT rich interactive domain 3... 139 2.8e-06 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 123 3.3e-06 2
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 129 3.6e-06 1
UNIPROTKB|E1BI80 - symbol:ARID3B "Uncharacterized protein... 137 4.7e-06 1
UNIPROTKB|F1NL47 - symbol:ARID3B "Uncharacterized protein... 137 4.7e-06 1
UNIPROTKB|Q8IVW6 - symbol:ARID3B "AT-rich interactive dom... 137 4.8e-06 1
MGI|MGI:1930768 - symbol:Arid3b "AT rich interactive doma... 137 4.9e-06 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 122 5.3e-06 2
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 137 5.8e-06 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 125 6.2e-06 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 126 8.0e-06 1
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 100 9.1e-06 2
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 122 1.1e-05 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 124 1.3e-05 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 124 1.3e-05 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 124 1.4e-05 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 124 1.4e-05 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 109 1.4e-05 1
DICTYBASE|DDB_G0275333 - symbol:DDB_G0275333 "ARID/BRIGHT... 132 1.9e-05 2
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 122 2.2e-05 1
POMBASE|SPBC28F2.11 - symbol:SPBC28F2.11 "HMG box protein... 126 2.8e-05 1
WARNING: Descriptions of 48 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2010587 [details] [associations]
symbol:AT1G04880 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004809 Gene3D:1.10.150.60
SUPFAM:SSF46774 HSSP:P07155 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 EMBL:BT020255 EMBL:BT020442 EMBL:AB493433
IPI:IPI00523331 PIR:B86182 RefSeq:NP_171980.1 UniGene:At.42427
ProteinModelPortal:Q9MAT6 SMR:Q9MAT6 PaxDb:Q9MAT6 PRIDE:Q9MAT6
EnsemblPlants:AT1G04880.1 GeneID:839388 KEGG:ath:AT1G04880
TAIR:At1g04880 eggNOG:NOG236327 InParanoid:Q9MAT6 OMA:EMEDYRE
PhylomeDB:Q9MAT6 Genevestigator:Q9MAT6 Uniprot:Q9MAT6
Length = 448
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 210/351 (59%), Positives = 249/351 (70%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PIIGG++LDLH+LFVEVT+RGGI KI+ ERRWKEVTA F FP TATNAS+VLRKYY SL
Sbjct: 52 VPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSL 111
Query: 61 LRDYEQIYFFRSQ-----DSWQGPSTNAVSAPGTAQPSPDIQSAV--QQPRINAAVLPEA 113
L +YEQIYFFRS DS Q PS G +PS ++Q+ QP+IN A E
Sbjct: 112 LNNYEQIYFFRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTA---EF 168
Query: 114 RPASSGGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQA-PQYPI-HQVPS-SYNVINN 170
S GS V+GVIDGKFESGYLVTVTIGSE LKGVLYQ PQ + +Q P S+ V+ N
Sbjct: 169 LGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPN 228
Query: 171 N-NATAH--AVSG--VQXXXXXXXXXXXXXDPAHPKPNRSGYNFFFAEQHARLKPLHPGK 225
N +A+ V+G + DP HPKPNRSGYNFFFAEQHARLKPLHPGK
Sbjct: 229 TLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGK 288
Query: 226 DREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTGQVISDAIPLQQR 285
DR+ISRMIGELWNKL E EK +YQ KA++DKERYR EMEDYRE+ K GQ+IS+A+PLQQR
Sbjct: 289 DRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQQR 348
Query: 286 LPGADVDMVEVDTKLDETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
LP +VDM E D +DE D + D+ SSG S+ DD+++E D E+EE
Sbjct: 349 LPEQNVDMAEADLPIDEVEEDDEEG-DSSGSSGESEPHDDQSIETDPELEE 398
>TAIR|locus:2199824 [details] [associations]
symbol:AT1G76110 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006333 "chromatin
assembly or disassembly" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0010310 "regulation of hydrogen peroxide metabolic process"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] [GO:0031348 "negative regulation of defense response"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC009978 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 HSSP:P11632 EMBL:AY099630 EMBL:BT008823
IPI:IPI00540147 PIR:B96789 RefSeq:NP_177738.1 UniGene:At.43665
ProteinModelPortal:Q9SGS2 SMR:Q9SGS2 IntAct:Q9SGS2 PaxDb:Q9SGS2
PRIDE:Q9SGS2 EnsemblPlants:AT1G76110.1 GeneID:843943
KEGG:ath:AT1G76110 TAIR:At1g76110 InParanoid:Q9SGS2 OMA:FMIPVIG
PhylomeDB:Q9SGS2 Genevestigator:Q9SGS2 Uniprot:Q9SGS2
Length = 338
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 127/280 (45%), Positives = 173/280 (61%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP+IGGKELDLH L+VEVT RGG EK++ E++W+EV +F F +T T+ASFVLRK+Y +L
Sbjct: 61 IPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNL 120
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGG 120
L YEQ++ F ++ GP + + A A PS + A+ + + P S G
Sbjct: 121 LFHYEQVHLFTAR----GPLLHPI-ATFHANPSTSKEMALVEYTPPSIRYHNTHPPSQGS 175
Query: 121 SP--VIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAV 178
S IG I+GKF+ GYLV V +GSE L GVLY + Q P SS + NN +
Sbjct: 176 SSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYHSAQ-P--GPSSSPTAVLNNAVVPYVE 232
Query: 179 SGVQXXXXXXXXXXXXX-DPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELW 237
+G + DP +PKPNRSGYNFFFAE+H +LK L+P K+RE +++IGE W
Sbjct: 233 TGRRRRRLGKRRRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESW 292
Query: 238 NKLKESEKAVYQEKALKDKERYRIEMEDYRE--RLKTGQV 275
+ L E+ VYQ+ LKDKERY+ E+ +YRE RL+ G +
Sbjct: 293 SNLSTEERMVYQDIGLKDKERYQRELNEYRETLRLRDGDM 332
>TAIR|locus:2020517 [details] [associations]
symbol:AT1G55650 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 Pfam:PF00505 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC002328
IPI:IPI00543464 PIR:H96598 RefSeq:NP_175961.1 UniGene:At.52216
ProteinModelPortal:Q9LG02 SMR:Q9LG02 PRIDE:Q9LG02
EnsemblPlants:AT1G55650.1 GeneID:842014 KEGG:ath:AT1G55650
TAIR:At1g55650 InParanoid:Q9LG02 Genevestigator:Q9LG02
Uniprot:Q9LG02
Length = 337
Score = 320 (117.7 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 72/158 (45%), Positives = 100/158 (63%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+GGK LDLHRLF EVT+RGG+EK+IK+RR KEV FNF +T TN++FVLRK Y +
Sbjct: 57 IPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKM 116
Query: 61 LRDYEQIYFFRSQDS--WQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASS 118
L ++E +Y+F++ S W+ + +A D Q E +P
Sbjct: 117 LFEFEHLYYFQAPLSTFWEKEKALKLLIEKSANRDKDSQ--------------ELKP--- 159
Query: 119 GGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQ-APQ 155
G+ + G+IDGKFESGYL++ +GSE LKG+LY +P+
Sbjct: 160 -GTVITGIIDGKFESGYLISTKVGSEKLKGMLYHISPE 196
Score = 159 (61.0 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 200 PKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERY 259
PK R+GYNFF AEQ R+K + G+ + G +W L ES++ VY EK+ +D +RY
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRY 274
Query: 260 RIEMEDYRERLKT 272
++E+ YR +++
Sbjct: 275 KMEILQYRSLMES 287
>TAIR|locus:2088160 [details] [associations]
symbol:AT3G13350 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR009071 InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 Pfam:PF00505 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
EMBL:AB024034 EMBL:AF361582 EMBL:AY133557 EMBL:AY087770
IPI:IPI00541454 RefSeq:NP_566454.1 UniGene:At.27664 HSSP:P07155
ProteinModelPortal:Q9LTT3 SMR:Q9LTT3 IntAct:Q9LTT3 PaxDb:Q9LTT3
PRIDE:Q9LTT3 EnsemblPlants:AT3G13350.1 GeneID:820535
KEGG:ath:AT3G13350 TAIR:At3g13350 HOGENOM:HOG000243289
InParanoid:Q9LTT3 OMA:GVLYHIP PhylomeDB:Q9LTT3
ProtClustDB:CLSN2681954 Genevestigator:Q9LTT3 Uniprot:Q9LTT3
Length = 319
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 71/157 (45%), Positives = 98/157 (62%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P +GG LDLHRLF+EVT+RGGIE+++K+R+WKEV F+FP+T T+ASFVLRKYY
Sbjct: 63 VPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKF 122
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGG 120
L E +Y+ S + A+ + P+P+ + +P++ G
Sbjct: 123 LFQLEHVYYLEKPVSSLQSTDEALKSLANESPNPE--EGIDEPQV--------------G 166
Query: 121 SPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYP 157
V G IDGKF+SGYLVT+ +GS+ LKGVLY PQ P
Sbjct: 167 YEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTP 203
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 74/158 (46%), Positives = 95/158 (60%)
Query: 120 GSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAVS 179
G V G IDGKF+SGYLVT+ +GS+ LKGVLY PQ P S + T A+
Sbjct: 166 GYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTP----SQSQQTME----TPSAIV 217
Query: 180 GVQXXXXXXXXXXXXXDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNK 239
D PK +RSGYNFFFAEQ+ARLKP + G++R I++ IG +W+
Sbjct: 218 QSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSN 277
Query: 240 LKESEKAVYQEKALKDKERYRIEMEDYRERLKTGQVIS 277
L ESEK VYQ+K +KD ERYRIEM +Y+ ++G S
Sbjct: 278 LTESEKQVYQDKGVKDVERYRIEMLEYKSSHESGATAS 315
>UNIPROTKB|Q68CP9 [details] [associations]
symbol:ARID2 "AT-rich interactive domain-containing protein
2" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006337 "nucleosome disassembly" evidence=IDA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 EMBL:DQ096628 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0016568 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AY727870 EMBL:AL832200
EMBL:BX537879 EMBL:CR749833 EMBL:AK027718 EMBL:AK127872
EMBL:BC090062 EMBL:AB046777 IPI:IPI00444237 IPI:IPI00470537
IPI:IPI00647133 RefSeq:NP_689854.2 UniGene:Hs.317304
ProteinModelPortal:Q68CP9 SMR:Q68CP9 DIP:DIP-33391N IntAct:Q68CP9
STRING:Q68CP9 PhosphoSite:Q68CP9 DMDM:73921721 PaxDb:Q68CP9
PRIDE:Q68CP9 DNASU:196528 Ensembl:ENST00000334344 GeneID:196528
KEGG:hsa:196528 UCSC:uc001ror.3 CTD:196528 GeneCards:GC12P046123
HGNC:HGNC:18037 MIM:609539 neXtProt:NX_Q68CP9 PharmGKB:PA134916396
eggNOG:NOG311317 HOVERGEN:HBG068777 InParanoid:Q68CP9 KO:K11765
OMA:IQNSIPQ OrthoDB:EOG49KFPP GenomeRNAi:196528 NextBio:89525
PMAP-CutDB:Q68CP9 ArrayExpress:Q68CP9 Bgee:Q68CP9
Genevestigator:Q68CP9 Uniprot:Q68CP9
Length = 1835
Score = 199 (75.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP +GGKELDLH L+ VT GG K+ ++ +W E+ FNFP + +NA+F L++YY
Sbjct: 37 IPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRY 96
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPS 93
L YE+++ F D P P A PS
Sbjct: 97 LEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPS 129
Score = 49 (22.3 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 28/98 (28%), Positives = 39/98 (39%)
Query: 90 AQPSPDIQSAVQQPR-INAAVLPEARPASSGGSPVIGVIDGKFESGYLVTVTIGSETLKG 148
A P +Q VQQP+ + V P+ A G P G + L+ G T G
Sbjct: 1020 APPPQQVQVQVQQPQQVQMQVQPQQSNAGVG-QPASG--ESSLIKQLLLPKR-GPSTPGG 1075
Query: 149 -VLYQAPQYPIH---QVPSSYNV--INNNNATAHAVSG 180
++ APQ P + PS V + +N A V G
Sbjct: 1076 KLILPAPQIPPPNNARAPSPQVVYQVASNQAAGFGVQG 1113
Score = 47 (21.6 bits), Expect = 8.2e-12, Sum P(3) = 8.2e-12
Identities = 28/99 (28%), Positives = 39/99 (39%)
Query: 92 PSPDIQSAVQQPRINAAVLPEARPASSGGSPVIGVIDGKFESGYLVTVTIGSETLKGVLY 151
P +++ V Q I +P + A GG P V+ VTV + S+TL
Sbjct: 710 PCEVVKATVIQNSIPQTGVPVSI-AVGGGPPQSSVVQNHSTGPQPVTV-VNSQTLLHHPS 767
Query: 152 QAPQY-PIH-----QVPSS--YNVINNNNATAHAVSGVQ 182
PQ P+H Q+PS VI +H VQ
Sbjct: 768 VIPQQSPLHTVVPGQIPSGTPVTVIQQAVPQSHMFGRVQ 806
Score = 38 (18.4 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 307 SPQ-TPDNESSSGVSDFEDDKTVEKDTEMEESPGV 340
SP + D S++G ++ + K +DT+ E G+
Sbjct: 1496 SPALSSDVRSTNGTAECKTVKRPAEDTDRETVAGI 1530
>UNIPROTKB|E1C9H0 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257 PROSITE:PS00028
PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355 SMART:SM00501
GO:GO:0006355 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337 Gene3D:1.10.150.60
SUPFAM:SSF46774 OMA:IQNSIPQ GeneTree:ENSGT00390000016138
EMBL:AADN02010001 EMBL:AADN02010002 EMBL:AADN02010003
IPI:IPI00593469 Ensembl:ENSGALT00000015735 Uniprot:E1C9H0
Length = 1831
Score = 202 (76.2 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP++GGKELDLH L+ VT GG K+ ++ +W E+ FNFP + +NA+F L++YY
Sbjct: 37 IPVVGGKELDLHALYTRVTTLGGFGKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRY 96
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPS 93
L YE+++ F +D P P A P+
Sbjct: 97 LEKYEKVHHFGEEDEEVQPGNPKPQLPIGAIPT 129
Score = 42 (19.8 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 156 YPIHQVPSSYNVINNNNATAHAVSGVQ 182
+P H V + INN A H V GV+
Sbjct: 573 FPNHTVKRVEDPINNGQAHIHVV-GVK 598
Score = 40 (19.1 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 280 IPLQ---QRLPGADVDMVEVDTKLDETGGDSPQT--PDNESSSG 318
+P+Q Q+ P + +V VD+ D + SP P S G
Sbjct: 604 LPIQMYYQQQPASSTPIVRVDSIPDMSASPSPAVGLPHGPQSVG 647
>ZFIN|ZDB-GENE-030131-6311 [details] [associations]
symbol:arid2 "AT rich interactive domain 2 (ARID,
RFX-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001606 InterPro:IPR003150 InterPro:IPR007087
InterPro:IPR015880 InterPro:IPR016024 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 ZFIN:ZDB-GENE-030131-6311 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:CR847994 EMBL:AL929171
GeneTree:ENSGT00390000016138 IPI:IPI00933367
Ensembl:ENSDART00000113360 Uniprot:E7F3J3
Length = 1573
Score = 187 (70.9 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P++GGKELDL L+V V + GG K+ + +W E+ F FP + +NA+FVL++YY
Sbjct: 37 VPVVGGKELDLGALYVRVVSLGGFAKVSDKNQWVELVEDFQFPRSCSNAAFVLKQYYLRY 96
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPS 93
L YE+++ F +D + P P A P+
Sbjct: 97 LEKYEKVHHFGEEDEEEQPGNPKHLLPIGAIPT 129
Score = 51 (23.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 26/85 (30%), Positives = 36/85 (42%)
Query: 79 PSTNAVSAPGTAQP-SPDIQSAVQQPRINAAVLPEARPASSGGSPVIGVIDGKFESGYLV 137
P NA SAP P +P Q+A+ AA +P RP + +I + V
Sbjct: 673 PLANAPSAPAPRPPLNPPGQAALPPCPPAAAPVP-IRPNDILKTAMIQSSIPTASAAPAV 731
Query: 138 TVTIGSETLKGVLYQAPQYPIHQVP 162
GS T + +L+ AP I Q P
Sbjct: 732 PNHSGSSTQQPLLHHAPVALIQQGP 756
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 327 TVEKDTEMEESPGVGLGTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDDIVRN 384
T K + +E S G L +VDL+ + + E A V V +V +
Sbjct: 433 TCSKISSVERSIGEDLLVRLVSVDLQTFGPDALTAVKLIEHQASSSQVSEVRPQLVEH 490
Score = 40 (19.1 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 302 ETGGDSPQTPDNESS---SGVSDFE 323
++G D QTP + +GV DFE
Sbjct: 1143 QSGCDGKQTPADPKKLMVNGVCDFE 1167
Score = 39 (18.8 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 93 SPDIQSAVQQPRINAAVLPEARPASSGGSPVI 124
SP ++ + I +LP+ P++ GG ++
Sbjct: 915 SPVQPTSTESSLIKQLLLPKRGPSTPGGKLIL 946
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 42/121 (34%), Positives = 62/121 (51%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG F +E H ++K HPG R++++ +GE+WN L +SEK Y KA K
Sbjct: 88 DPKAPKRLPSGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSDSEKQPYINKAAK 147
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
K +Y + D++ R K D ++ G MVE + K DE + Q P ++
Sbjct: 148 LK-KYEKDAADHKSRGKF-----DGTKGPAKVAGK---MVEEEDKEDEEEEEQSQEPLHQ 198
Query: 315 S 315
S
Sbjct: 199 S 199
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHP--GKD-REISRMIGELWNKLKESEKAVYQEKA 252
DP PK + S Y FF E+ A + P KD + +MIGE WNKL E EKA +++KA
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 253 LKDKERYRIEMEDY 266
+DK RY E +Y
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHP--GKD-REISRMIGELWNKLKESEKAVYQEKA 252
DP PK + S Y FF E+ A + P KD + +MIGE WNKL E EKA +++KA
Sbjct: 17 DPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKA 76
Query: 253 LKDKERYRIEMEDY 266
+DK RY E +Y
Sbjct: 77 QEDKLRYEKEKAEY 90
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/74 (37%), Positives = 36/74 (48%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y+FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK N S + FF E ++K +P ++ ++G+ W +L +E+ Y+EKA +
Sbjct: 12 DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQ 71
Query: 255 DKERYRIEMEDYRERLKTGQ 274
DKERY E ++Y +L G+
Sbjct: 72 DKERYERERKEYDTKLANGE 91
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 120 (47.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 120 (47.3 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|K7EJ04 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC005391 EMBL:AC005379
HGNC:HGNC:3031 InterPro:IPR023334 PROSITE:PS51486
Ensembl:ENST00000587532 Uniprot:K7EJ04
Length = 182
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 11 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 70
Query: 61 LRDYE 65
L YE
Sbjct: 71 LYPYE 75
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 145 (56.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 122 (48.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/108 (33%), Positives = 57/108 (52%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDE 302
KE+Y ++ DY+ + K A ++++ D D E D DE
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEDDED--EDDDDDDE 194
Score = 127 (49.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 53/194 (27%), Positives = 81/194 (41%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETG-----GDS 307
DK RY EM+DY K G+ D ++ G + E K+ T GD
Sbjct: 65 KADKVRYDREMKDYGPA-KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV 123
Query: 308 PQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPA-FELPKAE 366
+ E + +SD E + K +++E + S + A+ PA K E
Sbjct: 124 AKKL-GEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKVARKKVE 181
Query: 367 ENAKDKNVENVSDD 380
E+ +D++ ++ DD
Sbjct: 182 EDDEDEDDDD--DD 193
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 143 (55.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/108 (30%), Positives = 58/108 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDE 302
KE+Y ++ DY+ + K A ++++ D + E + + +E
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEE 196
Score = 121 (47.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 50/194 (25%), Positives = 78/194 (40%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETG-----GDS 307
DK RY EM+DY K G+ D ++ G + E K+ T GD
Sbjct: 65 KADKVRYDREMKDYGPA-KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV 123
Query: 308 PQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPA-FELPKAE 366
+ E + ++D E + K +++E + S + A+ PA K E
Sbjct: 124 AKKL-GEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKVARKKVE 181
Query: 367 ENAKDKNVENVSDD 380
E +++ E ++
Sbjct: 182 EEDEEEEEEEEEEE 195
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 143 (55.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 120 (47.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 147 (56.8 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 107 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAK 166
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGD 306
KE+Y ++ DY+ + K A ++++ D + E + + +E D
Sbjct: 167 LKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEEEEEEEEEEEED 218
Score = 120 (47.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 23 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 82
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 83 KADKVRYDREMKDY 96
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 143 (55.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 34/113 (30%), Positives = 59/113 (52%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L + EK Y KA K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 255 DKERYRIEMEDYRERLK-TGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGD 306
KE+Y ++ DY+ + K G + ++++ D + E + + DE D
Sbjct: 148 LKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDEDDDD 200
Score = 118 (46.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 29/74 (39%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EKA + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 63
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 64 KADKVRYDREMKDY 77
>WB|WBGene00000476 [details] [associations]
symbol:cfi-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0045165 "cell fate commitment" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0006355
GO:GO:0030182 GO:GO:0003677 GO:GO:0006351 GO:GO:0045165
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 InterPro:IPR023334 PROSITE:PS51486 HSSP:Q24573
EMBL:AF487547 EMBL:Z81128 EMBL:AL023824 EMBL:Z81033 PIR:T25159
RefSeq:NP_492644.2 UniGene:Cel.180 ProteinModelPortal:O02326
SMR:O02326 PaxDb:O02326 EnsemblMetazoa:T23D8.8 GeneID:188793
KEGG:cel:CELE_T23D8.8 UCSC:T23D8.8 CTD:188793 WormBase:T23D8.8
HOGENOM:HOG000017380 InParanoid:O02326 OMA:YDEENTN NextBio:940112
Uniprot:O02326
Length = 467
Score = 157 (60.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ V GG+ +II ++ W+E+T N PS+ T+A+F LR YQ
Sbjct: 205 IPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQKY 264
Query: 61 LRDYE--QIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAA 108
L DYE + D Q N APG + +P Q P +A
Sbjct: 265 LYDYECEKEKLSNQSDLQQAIDGNRREAPGR-RTAPSFPLPFQLPHAASA 313
>UNIPROTKB|E2RFL8 [details] [associations]
symbol:ARID2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001606 InterPro:IPR003150
InterPro:IPR007087 InterPro:IPR015880 Pfam:PF01388 Pfam:PF02257
PROSITE:PS00028 PROSITE:PS51011 PROSITE:PS51526 SMART:SM00355
SMART:SM00501 GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0006337
Gene3D:1.10.150.60 SUPFAM:SSF46774 OMA:IQNSIPQ
GeneTree:ENSGT00390000016138 EMBL:AAEX03015115 EMBL:AAEX03015116
Ensembl:ENSCAFT00000014865 Uniprot:E2RFL8
Length = 1836
Score = 164 (62.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP +GG DLH L E GG K+ ++ +W E+ FNFP + +NA+F L++YY
Sbjct: 37 IPAVGGNPPDLHGLKPESPPVGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRY 96
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPS 93
L YE+++ F D P P A PS
Sbjct: 97 LEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPS 129
Score = 48 (22.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 85 SAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGGSPVIGVIDGKFE--SGYLVTVT-I 141
++P Q S SA QP+ + P +S + V F+ +G +VT+ +
Sbjct: 824 TSPQPVQTSSQQTSAGSQPQDTVIIAPSQYVTTSASNIVSATSVQNFQVATGQMVTIAGV 883
Query: 142 GSETLKGVLYQ--APQ-YPIHQVPSS 164
S V +Q AP+ P QV S+
Sbjct: 884 PSPQPSRVGFQNIAPKPLPSQQVSST 909
Score = 40 (19.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 88 GTAQPSPDIQSAVQQPRINAAVLPEARPASSGGSPVI 124
G QP+ S ++Q +LP+ P++ GG ++
Sbjct: 1048 GVGQPASGESSLIKQ-----LLLPKRGPSTPGGKLIL 1079
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 83 AVSAPGTAQPSPDIQSAVQQPR----INAAVLPEARPASSGGSPVIGVIDGKFESGYLVT 138
+++ G A S +Q+ P+ +N+ L SP+ V+ G+ SG VT
Sbjct: 731 SIAVGGGAAQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHTVVPGQIPSGTPVT 790
Query: 139 V 139
V
Sbjct: 791 V 791
Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 94 PDIQSAVQQPRIN 106
PDI+S +++P +N
Sbjct: 1347 PDIKSDLKKPLVN 1359
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHP--GKD-REISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y F+ ++ + P KD ++ ++IGE W +L ++KA Y++KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 253 LKDKERYRIEMEDYRER 269
DK RY E+E+YR++
Sbjct: 80 QLDKVRYSKEIEEYRKK 96
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHP--GKD-REISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y F+ ++ + P KD ++ ++IGE W +L ++KA Y++KA
Sbjct: 20 DPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKA 79
Query: 253 LKDKERYRIEMEDYRER 269
DK RY E+E+YR++
Sbjct: 80 QLDKVRYSKEIEEYRKK 96
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 142 (55.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K PG ++++ +GE+WNK+ EK Y++KA K
Sbjct: 90 DPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAK 149
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K G + A P + P D E D + ++ D + D+E
Sbjct: 150 LKEKYEKDIAAYRSKGKVGGGAAKA-PSK---PDKANDEDEDDDEEEDEDDDDEEEDDDE 205
Score = 103 (41.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y +F E+H + P E S+ E W + EK +++ A
Sbjct: 4 DPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 64 KLDKARYEREMKNY 77
Score = 49 (22.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
+ GG + + P + D +DD+ ++D + EE
Sbjct: 166 KVGGGAAKAPSKPDKANDEDEDDDEEEDEDDDDEE 200
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 132 (51.5 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 56 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 115
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 116 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 174
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 140 (54.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L ++EK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 130 (50.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S Y FF + +++ +PG ++ +M+GE W L + E+ Y++KA
Sbjct: 23 DPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAA 82
Query: 255 DKERYRIEMEDYRERLKTGQVISD 278
DK+RY ED + K G+ D
Sbjct: 83 DKKRY----EDEKAAYKAGEAEED 102
>UNIPROTKB|G3MWU0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:DAAA02023880 Ensembl:ENSBTAT00000064321 Uniprot:G3MWU0
Length = 385
Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 42/126 (33%), Positives = 61/126 (48%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 142 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 201
Query: 61 LRDYE-QIYFFRSQDSWQGPSTNAVSAPGTAQP---SPDIQSAVQQPRINAAVLPEARPA 116
L YE + S Q + ++ G Q +P A Q PR PE PA
Sbjct: 202 LYPYECETRALSSPGELQA-AIDSNRREGRRQAYTAAPLFGLAGQPPRGTPGPAPEPGPA 260
Query: 117 SSGGSP 122
P
Sbjct: 261 PPTPGP 266
>UNIPROTKB|I3L5S4 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
EMBL:CU928717 Ensembl:ENSSSCT00000025460 Uniprot:I3L5S4
Length = 386
Score = 143 (55.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 139 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 198
Query: 61 LRDYE 65
L YE
Sbjct: 199 LYPYE 203
Score = 44 (20.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 78 GPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGGSPV 123
GP+ AP +A P+P +SA + +A+ LP A SPV
Sbjct: 249 GPALGPGPAPPSATPTPAPRSA----QGSASGLPAHACAQLSPSPV 290
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S Y FF EQ ++ +PG ++ +++GE W L + ++A Y KA
Sbjct: 20 DPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPYDAKAAA 79
Query: 255 DKERYRIEMEDYR 267
DK+RY E Y+
Sbjct: 80 DKKRYEDEKAAYQ 92
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 137 (53.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K +PG ++++ +GE+WN L + EK Y KA K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 255 DKERYRIEMEDYRERLK-TGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGD 306
KE+Y ++ DY+ + K G + ++++ D + E + + DE D
Sbjct: 149 LKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDEDDDD 201
Score = 125 (49.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 29/74 (39%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EKA + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|F1MGP2 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:DAAA02023880 IPI:IPI00842301
RefSeq:XP_002689857.1 RefSeq:XP_600416.3 ProteinModelPortal:F1MGP2
Ensembl:ENSBTAT00000036468 GeneID:522142 KEGG:bta:522142
NextBio:20873455 Uniprot:F1MGP2
Length = 415
Score = 147 (56.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 42/126 (33%), Positives = 61/126 (48%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 142 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 201
Query: 61 LRDYE-QIYFFRSQDSWQGPSTNAVSAPGTAQP---SPDIQSAVQQPRINAAVLPEARPA 116
L YE + S Q + ++ G Q +P A Q PR PE PA
Sbjct: 202 LYPYECETRALSSPGELQA-AIDSNRREGRRQAYTAAPLFGLAGQPPRGTPGPAPEPGPA 260
Query: 117 SSGGSP 122
P
Sbjct: 261 PPTPGP 266
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 255 DKERY 259
KE+Y
Sbjct: 149 LKEKY 153
Score = 120 (47.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 28/74 (37%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+DY
Sbjct: 65 KADKVRYDREMKDY 78
>UNIPROTKB|H3BQ92 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:AC100835
HGNC:HGNC:14350 Ensembl:ENST00000566147 Bgee:H3BQ92 Uniprot:H3BQ92
Length = 138
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 9 LDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYE 65
LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y L YE
Sbjct: 6 LDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 62
>UNIPROTKB|F1SEC1 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OMA:FARRQPV EMBL:CU928717 RefSeq:XP_003130719.1 UniGene:Ssc.88977
Ensembl:ENSSSCT00000012008 GeneID:100524334 KEGG:ssc:100524334
Uniprot:F1SEC1
Length = 416
Score = 143 (55.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 139 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 198
Query: 61 LRDYE 65
L YE
Sbjct: 199 LYPYE 203
Score = 44 (20.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 78 GPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGGSPV 123
GP+ AP +A P+P +SA + +A+ LP A SPV
Sbjct: 249 GPALGPGPAPPSATPTPAPRSA----QGSASGLPAHACAQLSPSPV 290
>UNIPROTKB|E2RGA0 [details] [associations]
symbol:ARID3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:138715 OMA:FARRQPV EMBL:AAEX03007945 RefSeq:XP_854656.1
ProteinModelPortal:E2RGA0 Ensembl:ENSCAFT00000028460 GeneID:611843
KEGG:cfa:611843 NextBio:20897379 Uniprot:E2RGA0
Length = 411
Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 45/138 (32%), Positives = 67/138 (48%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 136 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 195
Query: 61 LRDYE----------QIYFFRSQDSWQGPSTNAVSAP--GTAQPSP-DIQSAVQQPRINA 107
L YE ++ + +G +AP G A P+P + P A
Sbjct: 196 LYPYECETRALSSPGELQAAIDSNRREGRRQAYTAAPLYGLAGPTPRGPPGQISTPGAAA 255
Query: 108 -AVLPEARPA--SSGGSP 122
A P RPA S+ G P
Sbjct: 256 PAPTPSPRPAPGSASGLP 273
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 144 (55.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 52/191 (27%), Positives = 87/191 (45%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR---EISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y + E+ A LK G+++ E+++M GE W L E +KA Y + A
Sbjct: 242 DPLKPKQPISAYLIYANERRAALK----GENKSVIEVAKMAGEEWKNLSEEKKAPYDQMA 297
Query: 253 LKDKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPD 312
K+KE Y EME Y+ R K + +S ++ + + +++ K ++T +T +
Sbjct: 298 KKNKEIYLQEMEGYK-RTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKKTKE 356
Query: 313 NESSSGVSDFEDDKTVEKDTE-------------MEESPGVGLGTETSNVDL---EISAE 356
+ ++ D +K T +EE PG+ T T+++ L E+ E
Sbjct: 357 TAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEE 416
Query: 357 EPAFELPKAEE 367
E KA E
Sbjct: 417 EKQVYNSKAAE 427
>MGI|MGI:3650624 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045121 "membrane
raft" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
MGI:MGI:3650624 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InterPro:IPR023334 PROSITE:PS51486 CTD:138715 OMA:FARRQPV
EMBL:AL807796 EMBL:BC141237 IPI:IPI00556830 RefSeq:NP_001017362.1
UniGene:Mm.425179 ProteinModelPortal:A6PWV5 SMR:A6PWV5
PhosphoSite:A6PWV5 PRIDE:A6PWV5 Ensembl:ENSMUST00000084698
Ensembl:ENSMUST00000171251 GeneID:550619 KEGG:mmu:550619
UCSC:uc008sjj.1 InParanoid:B2RUN0 NextBio:414311 Bgee:A6PWV5
Genevestigator:A6PWV5 Uniprot:A6PWV5
Length = 409
Score = 143 (55.4 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 134 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 193
Query: 61 LRDYE 65
L YE
Sbjct: 194 LYPYE 198
>RGD|1560943 [details] [associations]
symbol:Arid3c "AT rich interactive domain 3C (BRIGHT-like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0045121 "membrane raft" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 RGD:1560943
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
OrthoDB:EOG415GF5 CTD:138715 OMA:FARRQPV IPI:IPI00563895
RefSeq:NP_001167452.1 UniGene:Rn.225882 ProteinModelPortal:D3ZQB1
Ensembl:ENSRNOT00000046589 GeneID:502946 KEGG:rno:502946
UCSC:RGD:1560943 NextBio:712863 Uniprot:D3ZQB1
Length = 410
Score = 143 (55.4 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 135 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 194
Query: 61 LRDYE 65
L YE
Sbjct: 195 LYPYE 199
>UNIPROTKB|A6NKF2 [details] [associations]
symbol:ARID3C "AT-rich interactive domain-containing
protein 3C" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0045121
"membrane raft" evidence=IDA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 InterPro:IPR023334
PROSITE:PS51486 OrthoDB:EOG415GF5 EMBL:AL450283 IPI:IPI00062225
RefSeq:NP_001017363.1 UniGene:Hs.534549 ProteinModelPortal:A6NKF2
SMR:A6NKF2 STRING:A6NKF2 PhosphoSite:A6NKF2 PaxDb:A6NKF2
PRIDE:A6NKF2 DNASU:138715 Ensembl:ENST00000378909 GeneID:138715
KEGG:hsa:138715 UCSC:uc011lon.2 CTD:138715 GeneCards:GC09M034621
HGNC:HGNC:21209 neXtProt:NX_A6NKF2 PharmGKB:PA134928507
InParanoid:A6NKF2 OMA:FARRQPV GenomeRNAi:138715 NextBio:83815
Bgee:A6NKF2 CleanEx:HS_ARID3C Genevestigator:A6NKF2 Uniprot:A6NKF2
Length = 412
Score = 143 (55.4 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 137 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 196
Query: 61 LRDYE 65
L YE
Sbjct: 197 LYPYE 201
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK + S Y FF E ++ +PG ++ +++GE W L +K Y+ KA
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 255 DKERYRIEMEDYRER 269
DK+RY E +Y ++
Sbjct: 75 DKKRYEKEKAEYAKK 89
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK + S Y FF E ++ +PG ++ +++GE W L +K Y+ KA
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEA 74
Query: 255 DKERYRIEMEDYRER 269
DK+RY E +Y ++
Sbjct: 75 DKKRYEKEKAEYAKK 89
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 124 (48.7 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 80 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 139
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 140 LKEKYEKDIAAYRAKGKS 157
Score = 42 (19.8 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E+D + EE
Sbjct: 158 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEE 192
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 303 TGGDSPQTPDNESSSGVSDFEDDKTVEKD 331
TG P++E + ED++ ++D
Sbjct: 168 TGSKKKNEPEDEEEEEEEEDEDEEEEDED 196
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRER-----LKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQ 309
KE+Y ++ YR + K G V ++ ++ + D + + + DE D +
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEE 210
Query: 310 TPDNE 314
D+E
Sbjct: 211 DDDDE 215
Score = 103 (41.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 46 (21.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE+ +D++ E DD
Sbjct: 176 VKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRER-----LKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQ 309
KE+Y ++ YR + K G V ++ ++ + D + + + DE D +
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEE 210
Query: 310 TPDNE 314
D+E
Sbjct: 211 DDDDE 215
Score = 103 (41.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 46 (21.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE+ +D++ E DD
Sbjct: 176 VKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 120 (47.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D P+ S + FF + + +K HP EI ++G+ W K+ +K Y++ A +
Sbjct: 49 DENAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAE 108
Query: 255 DKERYRIEMEDYRERLKT 272
DK+R+ +E ++Y E+LKT
Sbjct: 109 DKKRWELEKKNYDEKLKT 126
>ZFIN|ZDB-GENE-070209-182 [details] [associations]
symbol:arid3b "AT rich interactive domain 3B
(Bright like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 ZFIN:ZDB-GENE-070209-182
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OrthoDB:EOG415GF5
EMBL:CR376821 EMBL:CU181885 EMBL:FP017193 EMBL:BC131867
IPI:IPI00915616 RefSeq:NP_001076471.1 UniGene:Dr.150509 SMR:A2RRV2
Ensembl:ENSDART00000103470 GeneID:571249 KEGG:dre:571249
HOVERGEN:HBG095882 InParanoid:A2RRV2 OMA:NANTREE NextBio:20890475
Uniprot:A2RRV2
Length = 537
Score = 138 (53.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 215 IPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 274
Query: 61 LRDYE 65
L YE
Sbjct: 275 LYPYE 279
Score = 47 (21.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 70 FRSQDSWQGPSTNAVSAPGTAQPSP---DIQSAVQQPRINAAVLPEARPAS 117
+R S G + + +S P P+ ++Q A P + A +PE PAS
Sbjct: 312 YRFSPSPSGAAPHLLSPPKMHLPATGHNELQ-ATPSPALKKATVPEDSPAS 361
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 263 MEDYRERLKTG 273
+E RERL+TG
Sbjct: 385 LEQLRERLETG 395
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ YR + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
>UNIPROTKB|E1BGZ3 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 OMA:NGIMYTG InterPro:IPR023334
PROSITE:PS51486 EMBL:DAAA02020237 EMBL:DAAA02020238
EMBL:DAAA02020239 IPI:IPI00696235 UniGene:Bt.45437
ProteinModelPortal:E1BGZ3 Ensembl:ENSBTAT00000011354
NextBio:20869863 Uniprot:E1BGZ3
Length = 590
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 265 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 324
Query: 61 LRDYE 65
L YE
Sbjct: 325 LYPYE 329
>UNIPROTKB|Q99856 [details] [associations]
symbol:ARID3A "AT-rich interactive domain-containing
protein 3A" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0045121 "membrane raft" evidence=IDA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0045121
Gene3D:1.10.150.60 SUPFAM:SSF46774 EMBL:U88047 EMBL:AF039850
EMBL:AF039844 EMBL:AF039845 EMBL:AF039846 EMBL:AF039847
EMBL:AF039848 EMBL:AF039849 EMBL:AY152547 EMBL:AY845638
EMBL:AC005391 EMBL:AC005379 EMBL:BC033163 EMBL:BC060828
IPI:IPI00018500 RefSeq:NP_005215.1 UniGene:Hs.501296 PDB:2KK0
PDBsum:2KK0 ProteinModelPortal:Q99856 SMR:Q99856 STRING:Q99856
PhosphoSite:Q99856 DMDM:12230034 PaxDb:Q99856 PRIDE:Q99856
DNASU:1820 Ensembl:ENST00000263620 GeneID:1820 KEGG:hsa:1820
UCSC:uc002lql.3 CTD:1820 GeneCards:GC19P000926 HGNC:HGNC:3031
HPA:HPA004793 MIM:603265 neXtProt:NX_Q99856 PharmGKB:PA27485
eggNOG:NOG327790 HOGENOM:HOG000236281 HOVERGEN:HBG050574
InParanoid:Q99856 OMA:NGIMYTG OrthoDB:EOG4Z36GC PhylomeDB:Q99856
EvolutionaryTrace:Q99856 GenomeRNAi:1820 NextBio:7417 Bgee:Q99856
CleanEx:HS_ARID3A Genevestigator:Q99856 GermOnline:ENSG00000116017
InterPro:IPR023334 PROSITE:PS51486 Uniprot:Q99856
Length = 593
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 262 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 321
Query: 61 LRDYE 65
L YE
Sbjct: 322 LYPYE 326
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 124 (48.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
Score = 105 (42.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 43 (20.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 303 TGGDSPQTP-DNESSSGVSDFEDDKTVEKDTE 333
TG P D E + EDD+ E+D E
Sbjct: 179 TGSKKKNEPEDEEEEEEEEEDEDDEEEEEDEE 210
Score = 38 (18.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 302 ETGGDSPQTPD-NESSSGVSDFEDDKTVEKDTEMEE 336
E G P P ++ + D E+++ E+D + EE
Sbjct: 169 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDEDDEE 204
>UNIPROTKB|F1S6T2 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045121 "membrane raft"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0003682
GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:FP475994
RefSeq:XP_003354004.1 Ensembl:ENSSSCT00000014658 GeneID:100622803
KEGG:ssc:100622803 Uniprot:F1S6T2
Length = 596
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 266 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 325
Query: 61 LRDYE 65
L YE
Sbjct: 326 LYPYE 330
>MGI|MGI:1328360 [details] [associations]
symbol:Arid3a "AT rich interactive domain 3A (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0045121 "membrane raft" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 MGI:MGI:1328360 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0045121 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 eggNOG:NOG327790
HOGENOM:HOG000236281 HOVERGEN:HBG050574 OMA:NGIMYTG
OrthoDB:EOG4Z36GC InterPro:IPR023334 PROSITE:PS51486 EMBL:U60335
EMBL:AK141283 EMBL:AK154956 EMBL:BC050925 IPI:IPI00125956
RefSeq:NP_031906.1 UniGene:Mm.301282 ProteinModelPortal:Q62431
SMR:Q62431 STRING:Q62431 PhosphoSite:Q62431 PaxDb:Q62431
PRIDE:Q62431 Ensembl:ENSMUST00000019708 Ensembl:ENSMUST00000105376
Ensembl:ENSMUST00000105377 GeneID:13496 KEGG:mmu:13496
UCSC:uc007gap.1 InParanoid:Q62431 ChiTaRS:ARID3A NextBio:284025
Bgee:Q62431 CleanEx:MM_ARID3A Genevestigator:Q62431
GermOnline:ENSMUSG00000019564 Uniprot:Q62431
Length = 601
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 267 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 326
Query: 61 LRDYE 65
L YE
Sbjct: 327 LYPYE 331
>UNIPROTKB|F1PDC9 [details] [associations]
symbol:ARID3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 CTD:1820 OMA:NGIMYTG
InterPro:IPR023334 PROSITE:PS51486 EMBL:AAEX03012672
RefSeq:XP_855193.3 Ensembl:ENSCAFT00000031240 GeneID:612370
KEGG:cfa:612370 Uniprot:F1PDC9
Length = 605
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 280 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 339
Query: 61 LRDYE 65
L YE
Sbjct: 340 LYPYE 344
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEE-DEEEEEEEEDEDEE 209
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEE-DEEEEEEEEDEDEE 209
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + +E D + E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE 210
Score = 103 (41.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE+ +D+ E DD
Sbjct: 176 VKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + +E D + E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE 210
Score = 103 (41.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE+ +D+ E DD
Sbjct: 176 VKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDD 214
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
Score = 103 (41.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE +D++ E DD
Sbjct: 176 VKAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEEEDDD 214
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
Score = 103 (41.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 44 (20.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 287 PGADVDMVEVDTKLDE----TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGL 342
PG + +V KL E T D Q + +++ +E D + ++ G+
Sbjct: 118 PGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV 175
Query: 343 -GTETSNVDLEISAEEPAFELPKAEENAKDKNVENVSDD 380
E S E +E E + EE +D++ E DD
Sbjct: 176 VKAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDD 214
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/132 (27%), Positives = 66/132 (50%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + G+V DA ++ + A+ + + + DE + + + E
Sbjct: 151 LKEKYEKDIAAYRAK---GKV--DAG--KKVVAKAEKSKKKKEEEEDEDEDEEDEEDEEE 203
Query: 315 SSSGVSDFEDDK 326
D +DD+
Sbjct: 204 EEEEEEDDDDDE 215
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
Score = 105 (42.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 303 TGGDSPQTPDNESSSGVSDFEDDKTVEKDTE 333
TG P++E + ED++ ++D E
Sbjct: 179 TGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E+D + EE
Sbjct: 169 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEE 203
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
Score = 105 (42.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 303 TGGDSPQTPDNESSSGVSDFEDDKTVEKDTE 333
TG P++E + ED++ ++D E
Sbjct: 179 TGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E+D + EE
Sbjct: 169 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEE 203
>UNIPROTKB|I3L967 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:CU469022 EMBL:CU638715
Ensembl:ENSSSCT00000023820 OMA:MNIRISG Uniprot:I3L967
Length = 336
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 11 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 70
Query: 61 LRDYE 65
L YE
Sbjct: 71 LYAYE 75
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERY 259
KE+Y
Sbjct: 151 LKEKY 155
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 36/131 (27%), Positives = 65/131 (49%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + G+V DA ++ + A+ + + + DE + + + E
Sbjct: 151 LKEKYEKDIAAYRAK---GKV--DAG--KKVVAKAEKSKKKKEEEEDEDEDEEDEEDEEE 203
Query: 315 SSSGVSDFEDD 325
D +DD
Sbjct: 204 EEEEEEDDDDD 214
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y + YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y + YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + +E D + E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE 210
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + +E D + E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE 210
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E H ++K HPG ++++ +GE+WN +K ++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E H ++K HPG ++++ +GE+WN +K ++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEEEDEDEE 209
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 256 KERYRIEMEDYRE 268
K++Y E+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S Y FF E ++ +P ++ R++GE W L EK Y+ KA
Sbjct: 23 DPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQA 82
Query: 255 DKERYRIEMEDY 266
DK+RY E E Y
Sbjct: 83 DKKRYESEKELY 94
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 130 (50.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 40/131 (30%), Positives = 57/131 (43%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K DA G V E K E D D E
Sbjct: 151 LKEKYEKDIAAYRAKGKP-----DAAK-----KG--VVKAEKSKKKKEEEDDEEDEEDEE 198
Query: 315 SSSGVSDFEDD 325
D EDD
Sbjct: 199 EEEEEEDEEDD 209
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 122 (48.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
Score = 104 (41.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 43 (20.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 303 TGGDSPQTP-DNESSSGVSDFEDDKTVEKDTE 333
TG P D E + EDD+ E+D E
Sbjct: 179 TGSKKKNEPEDEEEEEEEEEEEDDEEEEEDEE 210
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E++ E +E
Sbjct: 169 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDE 203
>UNIPROTKB|E2RFI5 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
CTD:10620 OMA:LFSMARQ EMBL:AAEX03016311 RefSeq:XP_544771.2
ProteinModelPortal:E2RFI5 Ensembl:ENSCAFT00000028463 GeneID:487646
KEGG:cfa:487646 Uniprot:E2RFI5
Length = 560
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 39/128 (30%), Positives = 68/128 (53%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 240 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 299
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPD-IQSAVQQPRINAAVL---PEARPA 116
L YE A+S+P Q + D + ++P ++++L P A A
Sbjct: 300 LYAYEC-------------EKKALSSPAELQAAIDGNRREGRRPSYSSSLLGYSPAAAAA 346
Query: 117 SSGGSPVI 124
++ G+P +
Sbjct: 347 ATAGAPAL 354
>RGD|1306335 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (Bright like)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
RGD:1306335 GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR023334 PROSITE:PS51486 IPI:IPI00370524
Ensembl:ENSRNOT00000026736 UCSC:RGD:1306335 ArrayExpress:D4A102
Uniprot:D4A102
Length = 560
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 231 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 290
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPS--PDIQSAV--QQPRINAAVLPEARPA 116
L YE + + P+ + G + P S++ P AA A A
Sbjct: 291 LYAYEC-----EKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAAAAAAAAAAAA 345
Query: 117 S--SGGSPVI 124
S S G+P +
Sbjct: 346 SAASAGAPAL 355
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 123 (48.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ YR + K
Sbjct: 151 LKEKYEKDIAAYRAKGK 167
Score = 105 (42.0 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 303 TGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
TG P++E + E+D+ E++ E EE
Sbjct: 179 TGSKKKNEPEDEEEE--EEEEEDEDEEEEDEDEE 210
Score = 40 (19.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E++ E EE
Sbjct: 169 EAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDEDEE 203
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 129 (50.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 32/123 (26%), Positives = 59/123 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQ---RLPGADVDMVEVDTKLDETGGDSPQTP 311
KE+Y ++ YR + K + ++ + D + E D + +E + +
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEEEEEED 210
Query: 312 DNE 314
D+E
Sbjct: 211 DDE 213
Score = 103 (41.3 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 42 (19.8 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 314 ESSSGVSDFEDDKTVEKDTEMEE 336
E S + EDD+ E+D E EE
Sbjct: 179 EKSKKKKEEEDDEEDEEDEEEEE 201
>UNIPROTKB|E1BI80 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 CTD:10620 OMA:LFSMARQ
EMBL:DAAA02052500 EMBL:DAAA02052501 EMBL:DAAA02052502
IPI:IPI00706373 RefSeq:NP_001179977.1 UniGene:Bt.24486
ProteinModelPortal:E1BI80 Ensembl:ENSBTAT00000015698 GeneID:532938
KEGG:bta:532938 NextBio:20875853 Uniprot:E1BI80
Length = 553
Score = 137 (53.3 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 237 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 296
Query: 61 LRDYE 65
L YE
Sbjct: 297 LYAYE 301
>UNIPROTKB|F1NL47 [details] [associations]
symbol:ARID3B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
InterPro:IPR023334 PROSITE:PS51486 EMBL:AADN02051006
EMBL:AADN02051007 IPI:IPI00585316 Ensembl:ENSGALT00000002097
OMA:IRINGRX Uniprot:F1NL47
Length = 559
Score = 137 (53.3 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 247 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 306
Query: 61 LRDYE 65
L YE
Sbjct: 307 LYAYE 311
>UNIPROTKB|Q8IVW6 [details] [associations]
symbol:ARID3B "AT-rich interactive domain-containing
protein 3B" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.150.60
SUPFAM:SSF46774 eggNOG:NOG327790 HOGENOM:HOG000236281
InterPro:IPR023334 PROSITE:PS51486 EMBL:AF116846 EMBL:AB208830
EMBL:AC100835 EMBL:BC041792 IPI:IPI00328266 IPI:IPI00793438
IPI:IPI00853367 RefSeq:NP_006456.1 UniGene:Hs.655532 HSSP:Q24573
ProteinModelPortal:Q8IVW6 SMR:Q8IVW6 STRING:Q8IVW6
PhosphoSite:Q8IVW6 DMDM:152013359 PaxDb:Q8IVW6 PRIDE:Q8IVW6
Ensembl:ENST00000346246 GeneID:10620 KEGG:hsa:10620 UCSC:uc002ayc.3
UCSC:uc002ayd.3 UCSC:uc002aye.3 CTD:10620 GeneCards:GC15P074833
HGNC:HGNC:14350 MIM:612457 neXtProt:NX_Q8IVW6 PharmGKB:PA134896829
HOVERGEN:HBG103680 InParanoid:Q8IVW6 OMA:LFSMARQ GenomeRNAi:10620
NextBio:40352 ArrayExpress:Q8IVW6 Bgee:Q8IVW6 CleanEx:HS_ARID3B
Genevestigator:Q8IVW6 Uniprot:Q8IVW6
Length = 561
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 239 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 298
Query: 61 LRDYE 65
L YE
Sbjct: 299 LYAYE 303
>MGI|MGI:1930768 [details] [associations]
symbol:Arid3b "AT rich interactive domain 3B (BRIGHT-like)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR001606 Pfam:PF01388
PROSITE:PS51011 SMART:SM00501 MGI:MGI:1930768 GO:GO:0007275
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.150.60 SUPFAM:SSF46774 GeneTree:ENSGT00550000074575
eggNOG:NOG327790 HOGENOM:HOG000236281 InterPro:IPR023334
PROSITE:PS51486 HSSP:Q24573 CTD:10620 HOVERGEN:HBG103680
OMA:LFSMARQ EMBL:AF116847 EMBL:AK139455 EMBL:BC049776
IPI:IPI00275919 IPI:IPI00277032 IPI:IPI00652493 RefSeq:NP_062663.1
UniGene:Mm.425588 ProteinModelPortal:Q9Z1N7 SMR:Q9Z1N7
IntAct:Q9Z1N7 STRING:Q9Z1N7 PhosphoSite:Q9Z1N7 PRIDE:Q9Z1N7
Ensembl:ENSMUST00000004780 Ensembl:ENSMUST00000164035
Ensembl:ENSMUST00000171444 GeneID:56380 KEGG:mmu:56380
UCSC:uc009pvt.1 UCSC:uc009pvw.1 InParanoid:Q9Z1N7 OrthoDB:EOG415GF5
NextBio:312460 Bgee:Q9Z1N7 CleanEx:MM_ARID3B Genevestigator:Q9Z1N7
Uniprot:Q9Z1N7
Length = 568
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 237 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 296
Query: 61 LRDYE 65
L YE
Sbjct: 297 LYAYE 301
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 122 (48.0 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE Y ++ YR + K+
Sbjct: 151 LKEEYEKDIAAYRAKGKS 168
Score = 40 (19.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 302 ETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
E G P P + E+++ E D + EE
Sbjct: 169 EVGKKGPGRPTGSKKKNEPEDEEEEEEEDDEDEEE 203
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ FF + +K HPG E+ +++G+ W ++ +K Y+ KA
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQV 617
Query: 255 DKERYRIEMEDYR 267
DK+RY+ E+ DY+
Sbjct: 618 DKQRYKDEISDYK 630
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 125 (49.1 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ FF+E + +K +PG ++++ +GE+WN L +S+K +Y K K
Sbjct: 86 DPNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAK 145
Query: 255 DKERYRIEMEDYR 267
K +Y ++ DY+
Sbjct: 146 LK-KYEKDVADYK 157
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 126 (49.4 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E H ++K HPG ++++ +GE+WN +K ++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ Y+ + K + ++ + + E D + DE D D++
Sbjct: 151 LKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEE-DEEEEDEEDEEDDD 209
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 100 (40.3 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREIS---RMIGELWNKLKESEKAVYQEKA 252
DP PK S + F + K +P K++ ++ + G+ W L +SEKA Y KA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENP-KNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 253 LKDKERYRIEMEDYRERLKTG 273
K K Y ++ Y ++L+ G
Sbjct: 93 EKRKVEYEKNIKAYNKKLEEG 113
Score = 47 (21.6 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 312 DNESSSGVSDFEDDKTVEKDTEMEE 336
D ES VS+ D+ E +E EE
Sbjct: 117 DEESDKSVSEVNDEDDAEDGSEEEE 141
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E + K +PG ++++ +GE+W L +SEK Y +A K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAK 147
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVD 292
KE+Y ++ Y+ + K+ A Q+++ D D
Sbjct: 148 LKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDED 185
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 196 DPAHPKPNRSGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKA 252
DP PK S Y FF E+H + P P E S+ E W + + EK+ + E A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 253 LKDKERYRIEMEDY 266
DK Y E++DY
Sbjct: 65 KADKVHYDQEIKDY 78
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKSKS 168
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKGKS 168
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S Y FF E ++ +P ++ + +GE W L EK Y+ KA
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query: 255 DKERYRIEMEDYRERL 270
DK+RY E E Y L
Sbjct: 77 DKKRYESEKELYNATL 92
>DICTYBASE|DDB_G0275333 [details] [associations]
symbol:DDB_G0275333 "ARID/BRIGHT DNA binding
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001606 InterPro:IPR025718 Pfam:PF01388 Pfam:PF13867
PROSITE:PS51011 SMART:SM00501 dictyBase:DDB_G0275333 GO:GO:0005634
GO:GO:0003677 EMBL:AAFI02000013 Gene3D:1.10.150.60 SUPFAM:SSF46774
eggNOG:NOG327790 RefSeq:XP_643660.1 ProteinModelPortal:Q553R0
EnsemblProtists:DDB0216390 GeneID:8619925 KEGG:ddi:DDB_G0275333
InParanoid:Q553R0 Uniprot:Q553R0
Length = 478
Score = 132 (51.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI KEL+L++L+ V +RGG+E +I + W+++T T+A F LR +Y
Sbjct: 66 IPIFDHKELNLYKLYNCVISRGGLEAVIDNKLWRQITTDLAVDPERTDAGFRLRIHYLKY 125
Query: 61 LRDYEQIYFFRSQDSWQ 77
L YE+ ++ + +D Q
Sbjct: 126 LYPYERKHYLKIEDDEQ 142
Score = 40 (19.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 163 SSYNVINNNN 172
S++N INNNN
Sbjct: 291 SNFNSINNNN 300
Score = 37 (18.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 163 SSYNVINNNNATAHAVS 179
S+ N NNNN T + VS
Sbjct: 349 SNSNNNNNNNITNNLVS 365
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 122 (48.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG + ++ +GE+W++ +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAK 150
Query: 255 DKERYRIEMEDYRERLKT 272
KE+Y ++ YR + K+
Sbjct: 151 LKEKYEKDIAAYRAKSKS 168
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/168 (25%), Positives = 71/168 (42%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DPA PK S YN F Q + +K K +E+++ + E W L E ++ Y+E+A
Sbjct: 113 DPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEA 172
Query: 253 LKDKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQT-P 311
K +E Y EM Y + V + ++ D+ TK D D +T P
Sbjct: 173 SKLREAYEEEMAAYNASKENASVADSRVTAEETSTKPSEDLSS-PTKKDLI--DFSETRP 229
Query: 312 DNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPA 359
++S D ++ + + S TSNV+ +S +P+
Sbjct: 230 LAQASRATPDIKEQHAKKPKRKHTRST-----VPTSNVE-PVSQPQPS 271
>UNIPROTKB|F1NAK8 [details] [associations]
symbol:LOC100858693 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0045121
"membrane raft" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
GO:GO:0003677 GO:GO:0005622 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 InterPro:IPR023334 PROSITE:PS51486
EMBL:AADN02068975 EMBL:AADN02068976 IPI:IPI00651600
Ensembl:ENSGALT00000009379 OMA:RQTFGTA Uniprot:F1NAK8
Length = 368
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ ++I ++ W+E+T N P++ T+A+ +R Y
Sbjct: 113 IPIMAKQVLDLYTLYRLVTDKGGLVEVINKKIWREITKGLNLPTSITSAALTVRTQYMKY 172
Query: 61 LRDYE 65
L YE
Sbjct: 173 LYPYE 177
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 105 (42.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK+ +++ A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM++Y
Sbjct: 65 KSDKARYDREMKNY 78
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 130 (50.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 51/191 (26%), Positives = 84/191 (43%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGELWNKLKESEKAVYQEKALK 254
D PK + + + + +K +PG K EI++ GE+W +LK+ K +++ A K
Sbjct: 551 DSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSK--WEDAAAK 608
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
DK+RY EM +Y+ + G D+ D + +K +T SP N
Sbjct: 609 DKQRYHDEMRNYKP--EAG---GDS----------DNEKGGKSSKKRKTE-PSPSKKANT 652
Query: 315 SSSGVSDFE---DDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPAFELPKAEE--NA 369
S SG E DD + D E + P S+ D + + E ++EE NA
Sbjct: 653 SGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSESEPEESEEDSNA 712
Query: 370 KDKNVENVSDD 380
D++ E+ + D
Sbjct: 713 SDEDEEDEASD 723
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 119 (46.9 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ SG+ F AEQ +K +P ++++ +G +WN L +SEK + A K
Sbjct: 90 DPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADK 149
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGD 306
K++Y+ +M YR++ G + + P D D E D D+ D
Sbjct: 150 LKDKYQKDMAFYRKKGSGGSSSAKSEPKDD---DDDDDEEEEDDDDDDEDDD 198
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 98 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 157
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 158 DKERYMKELEQYQK 171
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 100 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADR 159
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 160 DKERYMRELEQYQK 173
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 100 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADR 159
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 160 DKERYMRELEQYQK 173
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 40/161 (24%), Positives = 81/161 (50%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLD-ETGGDSPQTPDNE 314
K++Y E+ Y++ + ++ ++ I ++++ D ++T L+ GGD D
Sbjct: 127 KQQYMKELRAYQQS-EAYKMCAEKIQ-EKKIKKEDSSSGLMNTLLNGHKGGDC----DGF 180
Query: 315 SSSGVSDFED---DKTVEKDTEMEESPGVGLGTETSNVDLE 352
S+ V F + D+ ++ E+ + + E N L+
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQ 221
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 40/161 (24%), Positives = 81/161 (50%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLD-ETGGDSPQTPDNE 314
K++Y E+ Y++ + ++ ++ I ++++ D ++T L+ GGD D
Sbjct: 127 KQQYMKELRAYQQS-EAYKMCTEKIQ-EKKIKKEDSSSGLMNTLLNGHKGGDC----DGF 180
Query: 315 SSSGVSDFED---DKTVEKDTEMEESPGVGLGTETSNVDLE 352
S+ V F + D+ ++ E+ + + E N L+
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQ 221
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 125 (49.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D PK +GY F E+ +L+ P EI+RM+G W+KL EK Y ++A +
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
Query: 255 DKERYRIEMEDYRE 268
DKERY E+E Y++
Sbjct: 159 DKERYMKELEQYQK 172
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 119 (46.9 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 31/112 (27%), Positives = 63/112 (56%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLD-ETGGD 306
K++Y E+ Y++ + ++ ++ I ++++ D ++T L+ GGD
Sbjct: 127 KQQYMKELRAYQQS-EAYKMCTEKIQ-EKKIKKEDSSSGLMNTLLNGHKGGD 176
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 103 (41.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
>WB|WBGene00001972 [details] [associations]
symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IGI] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
Length = 235
Score = 120 (47.3 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F+ ++ ++ HP K ++++ +G++W + + K +Y++KA
Sbjct: 131 DPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQA 190
Query: 255 DKERYRIEMEDYRERLK 271
DK+RY EM +Y+ ++
Sbjct: 191 DKDRYADEMRNYKAEMQ 207
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 117 (46.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+WN +K Y++KA K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 255 DKERY 259
KE+Y
Sbjct: 151 LKEKY 155
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 115 (45.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ + F +E H ++K HPG ++++ +GE+WN +K ++KA K
Sbjct: 92 DPDAPRRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAK 151
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y + YR + K
Sbjct: 152 LKEKYEKDNAAYRAKGK 168
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 117 (46.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 28/120 (23%), Positives = 55/120 (45%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++ + +GE+W +K Y++ A K
Sbjct: 91 DPNAPKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + +E + + D++
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEDEEDDDD 210
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 198 AHPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDK 256
++PK S Y F EQ + K HP K E+ R I LW +L E+EK VY+ +
Sbjct: 47 SYPKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEW 106
Query: 257 ERYRIEMEDYRERLKTGQVISDAIPLQQR 285
+ Y+ + Y+E+L Q++ +QR
Sbjct: 107 KAYKEAVSKYKEQLTPSQLMGMEKEARQR 135
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 31/124 (25%), Positives = 56/124 (45%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK + F +E ++K HPG ++ + +GE+WN +K ++KA K
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K V + ++ + + E D + +E + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAVKKGVVKAEKSKKKKEEEDDEEDEEDEE---EEEEEEDEE 207
Query: 315 SSSG 318
G
Sbjct: 208 EDDG 211
Score = 103 (41.3 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKA 252
DP P+ S Y FF K HP E S+ E W + EK +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 253 LKDKERYRIEMEDY 266
DK RY EM+ Y
Sbjct: 65 KADKARYEREMKTY 78
Score = 42 (19.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 314 ESSSGVSDFEDDKTVEKDTEMEE 336
E S + EDD+ E+D E EE
Sbjct: 179 EKSKKKKEEEDDEEDEEDEEEEE 201
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 200 PKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGELWNKLKESEKAVYQEKALKDKER 258
PK S Y + E ++K +PG K +I++ GELW LK+ K +++KA+K KE
Sbjct: 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEE 63
Query: 259 YRIEMEDY 266
Y +++Y
Sbjct: 64 YNKAVKEY 71
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K HPG ++++ +GE+W +K Y + A K
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAK 150
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNE 314
KE+Y ++ YR + K + ++ + + E D + DE + + D E
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEE-DEEEEEEKEDEDEE 209
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 40/160 (25%), Positives = 78/160 (48%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A K+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNES 315
K++Y E+ Y++ + +V ++ I + ++ D ++T L+ G D S
Sbjct: 127 KQQYLKELWAYQQS-EAYKVCTEKIQ-ENKIKKEDSSSGLMNTLLN--GHKGVDCGDGFS 182
Query: 316 SSGVSDFED---DKTVEKDTEMEESPGVGLGTETSNVDLE 352
+ V F + D+ ++ E+ + + E N L+
Sbjct: 183 TFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQ 222
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 111 (44.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP+ PK S + +E ++K HPG +++R +GE+WN +K EKA K
Sbjct: 87 DPSAPKRLPSAFFLLCSEYRPKIKGEHPGLSIGDVARKLGEMWNNTAADDKQPC-EKAAK 145
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ YR + K
Sbjct: 146 LKEKYEKDIAAYRAKGK 162
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 314 ESSSGVSDFEDDKTVEKDTEMEESPGVG 341
E S EDD+ E+D E EE G
Sbjct: 174 EKSKKKKKEEDDEEDEEDEEEEEEKEEG 201
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 42/191 (21%), Positives = 89/191 (46%)
Query: 200 PKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKER 258
PK + Y F EQ K +P K+ E+ + I ELW +L +SEK +Y++ D +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQV 109
Query: 259 YRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNESSSG 318
Y+ E+ +E+L Q++S L++ + + + K + T P+ P + +
Sbjct: 110 YKEEVNRIQEQLTPSQMVS----LEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNIF 165
Query: 319 VSD-FEDDKTVEKDTEME--ESPGVGLGTETSNVDLEISAEEPAFELPKAEENAKDKNVE 375
+++ F++ K +++ L + V +++ AE+ ++ +++ VE
Sbjct: 166 IAERFQEAKDGPSQVKLKTINENWKNLSSSQKQVYIQL-AEDDKVRYYNEMKSWEEQMVE 224
Query: 376 NVSDDIVRNDM 386
+D++R M
Sbjct: 225 VGRNDLIRRSM 235
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 38/143 (26%), Positives = 75/143 (52%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLD-ETGGDSPQTPDNE 314
K++Y E+ Y++ + ++ ++ I ++++ D ++T L+ GGD D
Sbjct: 127 KQQYMKELRAYQQS-EAYKMCTEKIQ-EKKIKKEDSGSGLMNTLLNGHKGGDC----DGF 180
Query: 315 SSSGVSDFED---DKTVEKDTEM 334
S+ V F + D+ ++ EM
Sbjct: 181 STFDVPIFTEEFLDQNKAREAEM 203
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 124 (48.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 55/201 (27%), Positives = 93/201 (46%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKD 255
DP PK S + + E+ A L+ + E++++ GE W L + +KA Y++ A K+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREENKSVV-EVAKITGEEWKNLSDKKKAPYEKVAKKN 309
Query: 256 KERYRIEMEDYRERLKTGQVIS--------------DAIPLQQRLPGADVDMVEVD--TK 299
KE Y ME+Y+ R K + +S +A+ + ++ D ++++ + TK
Sbjct: 310 KETYLQAMEEYK-RTKEEEALSQKKEEEELLKLHKQEALQMLKKKEKTD-NLIKKEKATK 367
Query: 300 LDETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDL---EISAE 356
+ P P +SS +D++ +K TE E PG T T+ + L E+S E
Sbjct: 368 KKKNENVDPNKPKKPASSYFLFSKDER--KKLTE--ERPGTNNATVTALISLKWKELSEE 423
Query: 357 EPAFELPKAEE--NAKDKNVE 375
E KA + A K VE
Sbjct: 424 EKQVYNGKAAKLMEAYKKEVE 444
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 17 EVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQ 66
+V ++ I KE+R KE + A +L +Y + +++ EQ
Sbjct: 192 QVEKEAYLQVIAKEKREKEAMKLLEDDQKQRTAMELLDQYL-NFVQEAEQ 240
>UNIPROTKB|B0QZ44 [details] [associations]
symbol:KDM5C "Smcy homolog, X-linked (Mouse), isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001606 InterPro:IPR001965 InterPro:IPR003347
InterPro:IPR004198 InterPro:IPR013637 InterPro:IPR019787
Pfam:PF00628 Pfam:PF01388 Pfam:PF02373 Pfam:PF02928 Pfam:PF08429
PROSITE:PS50016 PROSITE:PS51011 PROSITE:PS51184 SMART:SM00249
SMART:SM00501 SMART:SM00558 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016706 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.150.60
SUPFAM:SSF46774 InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375
SMART:SM00545 EMBL:CH471154 EMBL:AL139396 HOGENOM:HOG000290719
UniGene:Hs.631768 HGNC:HGNC:11114 ChiTaRS:KDM5C IPI:IPI00879547
SMR:B0QZ44 Ensembl:ENST00000404049 UCSC:uc004dsa.3
HOVERGEN:HBG068574 Uniprot:B0QZ44
Length = 1559
Score = 106 (42.4 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP + + LDL+ L V GG E I K+RRW V N+P N +LR +Y+ +
Sbjct: 102 IPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPP-GKNIGSLLRSHYERI 160
Query: 61 LRDYE 65
+ YE
Sbjct: 161 VYPYE 165
Score = 68 (29.0 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 35/153 (22%), Positives = 63/153 (41%)
Query: 213 EQHARLKPLHPGK--DREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270
E H+ + L G+ D E R + EL + +A + +AL+ + R +++ R
Sbjct: 1414 ENHSIWQLLQAGQPPDLERIRTLLELEKAERHGSRA--RGRALERRRRRKVD----RGGE 1467
Query: 271 KTGQVISDAIPLQQRLPGADVDMVEVDTKLDE-TGGDSPQTPDNESSSGVSDFEDDKTVE 329
+ P + R G + + V+ + +L+E TGG+ P P + S S E+ +E
Sbjct: 1468 GDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEGPPAPIPTTGSP-STQENQNGLE 1526
Query: 330 KDTEMEESPGVGLGTETSNVDLEISAEEPAFEL 362
P T T + L + P +L
Sbjct: 1527 PAEGTTSGPSAPFSTLTPRLHLPCPQQPPQQQL 1559
Score = 43 (20.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 75 SWQGPSTNAVSAPG-TAQPS--PDIQSAVQ-QPRI----NAAVLPEARPASSGGSPVIGV 126
SWQG + A+++ TA +++ +Q +PR N P + P G +
Sbjct: 1286 SWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPNYPAAPASDPLREGSGKDMPK 1345
Query: 127 IDGKFESGYLVT 138
+ G E+G VT
Sbjct: 1346 VQGLLENGDSVT 1357
>UNIPROTKB|P41229 [details] [associations]
symbol:KDM5C "Lysine-specific demethylase 5C" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016702 "oxidoreductase activity, acting on
single donors with incorporation of molecular oxygen, incorporation
of two atoms of oxygen" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0032453 "histone demethylase activity (H3-K4
specific)" evidence=IDA] [GO:0034720 "histone H3-K4 demethylation"
evidence=IDA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR003347 InterPro:IPR004198 InterPro:IPR013637
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 Pfam:PF02373
Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016 PROSITE:PS51011
PROSITE:PS51184 SMART:SM00249 SMART:SM00501 SMART:SM00558
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0016706 GO:GO:0016702
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.150.60 SUPFAM:SSF46774 InterPro:IPR003349
PROSITE:PS51183 Pfam:PF02375 SMART:SM00545 EMBL:AL139396
eggNOG:NOG327026 GO:GO:0032453 KO:K11446 HOGENOM:HOG000290719
CTD:8242 OrthoDB:EOG4894KP EMBL:L25270 EMBL:AK304732 EMBL:BC054499
EMBL:Z29650 IPI:IPI00013185 IPI:IPI00219412 IPI:IPI00640875
IPI:IPI01012687 PIR:I54361 RefSeq:NP_001140174.1 RefSeq:NP_004178.2
UniGene:Hs.631768 PDB:2JRZ PDBsum:2JRZ ProteinModelPortal:P41229
SMR:P41229 DIP:DIP-39663N IntAct:P41229 STRING:P41229
PhosphoSite:P41229 DMDM:117949812 PaxDb:P41229 PRIDE:P41229
DNASU:8242 Ensembl:ENST00000375379 Ensembl:ENST00000375383
Ensembl:ENST00000375401 Ensembl:ENST00000452825 GeneID:8242
KEGG:hsa:8242 UCSC:uc004drz.3 GeneCards:GC0XM053237 HGNC:HGNC:11114
MIM:300534 MIM:314690 neXtProt:NX_P41229 Orphanet:85279
PharmGKB:PA35964 InParanoid:P41229 OMA:ISWQGRA PhylomeDB:P41229
ChiTaRS:KDM5C EvolutionaryTrace:P41229 GenomeRNAi:8242
NextBio:31002 ArrayExpress:P41229 Bgee:P41229 CleanEx:HS_JARID1C
Genevestigator:P41229 GermOnline:ENSG00000126012 Uniprot:P41229
Length = 1560
Score = 106 (42.4 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP + + LDL+ L V GG E I K+RRW V N+P N +LR +Y+ +
Sbjct: 102 IPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPP-GKNIGSLLRSHYERI 160
Query: 61 LRDYE 65
+ YE
Sbjct: 161 VYPYE 165
Score = 68 (29.0 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 35/153 (22%), Positives = 63/153 (41%)
Query: 213 EQHARLKPLHPGK--DREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270
E H+ + L G+ D E R + EL + +A + +AL+ + R +++ R
Sbjct: 1415 ENHSIWQLLQAGQPPDLERIRTLLELEKAERHGSRA--RGRALERRRRRKVD----RGGE 1468
Query: 271 KTGQVISDAIPLQQRLPGADVDMVEVDTKLDE-TGGDSPQTPDNESSSGVSDFEDDKTVE 329
+ P + R G + + V+ + +L+E TGG+ P P + S S E+ +E
Sbjct: 1469 GDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEGPPAPIPTTGSP-STQENQNGLE 1527
Query: 330 KDTEMEESPGVGLGTETSNVDLEISAEEPAFEL 362
P T T + L + P +L
Sbjct: 1528 PAEGTTSGPSAPFSTLTPRLHLPCPQQPPQQQL 1560
Score = 43 (20.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 75 SWQGPSTNAVSAPG-TAQPS--PDIQSAVQ-QPRI----NAAVLPEARPASSGGSPVIGV 126
SWQG + A+++ TA +++ +Q +PR N P + P G +
Sbjct: 1287 SWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPNYPAAPASDPLREGSGKDMPK 1346
Query: 127 IDGKFESGYLVT 138
+ G E+G VT
Sbjct: 1347 VQGLLENGDSVT 1358
>UNIPROTKB|J9NTN3 [details] [associations]
symbol:ARID1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 GO:GO:0003677
GO:GO:0005622 Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031
SUPFAM:SSF46774 GeneTree:ENSGT00550000074575 EMBL:AAEX03001719
Ensembl:ENSCAFT00000044234 Uniprot:J9NTN3
Length = 1899
Score = 124 (48.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P +G K LDL+RL+V V GG+ ++ K ++W+E+ N T+++A+ L+K Y
Sbjct: 658 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 716
Query: 61 LRDYEQIYFFRSQDSWQ---GPSTNAVSAPGTAQPSPDIQSAVQQPR 104
L +E R +D S + S P PSP ++Q P+
Sbjct: 717 LYAFE-CKIERGEDPPPDIFAASDSKKSQPKIQPPSPAGSGSMQGPQ 762
Score = 51 (23.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 308 PQTPDNESSS-GVSD-FED--DKTVEKDTEMEESPGVGLGTETSNVDLEISAE 356
P P S+S G+ D F D D T +K M +PG TS++ +S E
Sbjct: 791 PPLPGMRSNSVGIQDAFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYE 843
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 40/160 (25%), Positives = 78/160 (48%)
Query: 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255
P PK +GY F E+ +++ HP EI++M+G W+KL+ +EK Y ++A K+
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 256 KERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNES 315
K++Y E+ Y++ + +V ++ I + ++ D ++T L+ G D S
Sbjct: 127 KQQYLKELWAYQQS-EAYKVCTEKIQ-ENKIKKEDSSSGLMNTLLN---GHKGVDCDGFS 181
Query: 316 SSGVSDFED---DKTVEKDTEMEESPGVGLGTETSNVDLE 352
+ V F + D+ ++ E+ + + E N L+
Sbjct: 182 TFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQ 221
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 121 (47.7 bits), Expect = 0.00038, P = 0.00038
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
D A PK S Y + R+K +PG EIS+ GE+W +L + +K + +KA +
Sbjct: 542 DAAAPKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDKKEEWDKKAEE 601
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVD----TKLDETGGDSPQT 310
K +Y M++Y+E +G + A +++ G V+ + K E G DS ++
Sbjct: 602 AKRQYEKAMKEYKE---SGGGAAAATK-EKKKKGGKVEAKKKSGGEKEKKKEGGNDSFKS 657
Query: 311 PD---NESSSGVSDFEDD---KTVEKDTEMEES 337
+ +E SS SD + K + D E EE+
Sbjct: 658 KEFISSEESSSESDHDRGSKRKASDDDDEEEEA 690
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
+PK S Y F EQ + K HP K E+ R I +W +L E+EK VY+ + +
Sbjct: 48 YPKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWK 107
Query: 258 RYRIEMEDYRERLKTGQVIS-DAIPLQQRL 286
Y+ + Y+E+L Q++ + Q+RL
Sbjct: 108 VYKEAVSKYKEQLTPSQLMGLEKEARQKRL 137
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
+PK + Y F EQ K +P K+ E+ + I +LW +L +SEK +Y++ D +
Sbjct: 49 YPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQ 108
Query: 258 RYRIEMEDYRERLKTGQVIS-DAIPLQQRL 286
Y+ E+ +E+L Q++S + +Q+RL
Sbjct: 109 VYKEEINRIQEQLTPSQMVSLEKEIMQKRL 138
Score = 111 (44.1 bits), Expect = 0.00081, P = 0.00081
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 200 PKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERY 259
PK RS YN F AE R + G + + I E W L S+K VY + A DK RY
Sbjct: 155 PKRPRSAYNIFIAE---RFQEARDGTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIRY 211
Query: 260 RIEMEDYRERL 270
EM+ + E++
Sbjct: 212 YNEMKSWEEQM 222
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
+PK + Y F EQ K +P K+ E+ + I +LW +L +SEK +Y++ D +
Sbjct: 49 YPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQ 108
Query: 258 RYRIEMEDYRERLKTGQVIS-DAIPLQQRL 286
Y+ E+ +E+L Q++S + +Q+RL
Sbjct: 109 VYKEEINRIQEQLTPSQMVSLEKEIMQKRL 138
Score = 111 (44.1 bits), Expect = 0.00081, P = 0.00081
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 200 PKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERY 259
PK RS YN F AE R + G + + I E W L S+K VY + A DK RY
Sbjct: 155 PKRPRSAYNIFIAE---RFQEARDGTSQVKLKAINENWKNLSNSQKQVYIQLAKDDKIRY 211
Query: 260 RIEMEDYRERL 270
EM+ + E++
Sbjct: 212 YNEMKSWEEQM 222
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 107 (42.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP+ PK S F F ++ ++K HPG ++++ +GE+WN +++K Y + A K
Sbjct: 80 DPSAPKRPLS--LFSFCSEYPQIKGEHPGLSIGDVAKKLGEMWNST-DTDKQPYGKMAAK 136
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ YR + K
Sbjct: 137 LKEKYEKDIAAYRAKGK 153
Score = 38 (18.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 314 ESSSGVSDFEDDKTVEKDTEMEE 336
E S + EDD+ ++D E EE
Sbjct: 165 EKSKKKKEEEDDEEDKEDEEEEE 187
Score = 37 (18.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 321 DFEDDKTVEKDTEMEE 336
D E+DK E++ E EE
Sbjct: 175 DDEEDKEDEEEEEEEE 190
>MGI|MGI:99781 [details] [associations]
symbol:Kdm5c "lysine (K)-specific demethylase 5C"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016702 "oxidoreductase activity, acting on single donors with
incorporation of molecular oxygen, incorporation of two atoms of
oxygen" evidence=IEA] [GO:0016706 "oxidoreductase activity, acting
on paired donors, with incorporation or reduction of molecular
oxygen, 2-oxoglutarate as one donor, and incorporation of one atom
each of oxygen into both donors" evidence=IEA] [GO:0032453 "histone
demethylase activity (H3-K4 specific)" evidence=ISO] [GO:0034720
"histone H3-K4 demethylation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001606 InterPro:IPR001965
InterPro:IPR003347 InterPro:IPR004198 InterPro:IPR013637
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01388 Pfam:PF02373
Pfam:PF02928 Pfam:PF08429 PROSITE:PS50016 PROSITE:PS51011
PROSITE:PS51184 SMART:SM00249 SMART:SM00501 SMART:SM00558
MGI:MGI:99781 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0016706
GO:GO:0016702 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR003349 PROSITE:PS51183 Pfam:PF02375 SMART:SM00545
eggNOG:NOG327026 GeneTree:ENSGT00530000063118 GO:GO:0032453
KO:K11446 CTD:8242 OrthoDB:EOG4894KP ChiTaRS:KDM5C EMBL:AF127245
EMBL:AK008105 EMBL:AK155279 EMBL:AK155427 EMBL:AK155651
EMBL:AK158340 EMBL:AK011577 EMBL:BC043096 EMBL:BC054550 EMBL:Z29651
EMBL:AK129096 EMBL:L29563 EMBL:AF039894 IPI:IPI00112611
IPI:IPI00221399 IPI:IPI00776021 PIR:I48775 PIR:I84689
RefSeq:NP_038696.2 UniGene:Mm.142655 ProteinModelPortal:P41230
SMR:P41230 STRING:P41230 PhosphoSite:P41230 PaxDb:P41230
PRIDE:P41230 Ensembl:ENSMUST00000082177 Ensembl:ENSMUST00000112584
Ensembl:ENSMUST00000112588 GeneID:20591 KEGG:mmu:20591
UCSC:uc009uqc.2 UCSC:uc009uqd.2 UCSC:uc009uqe.2 InParanoid:P41230
NextBio:298901 Bgee:P41230 Genevestigator:P41230
GermOnline:ENSMUSG00000025332 Uniprot:P41230
Length = 1554
Score = 106 (42.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP + + LDL+ L V GG E I K+RRW V N+P N +LR +Y+ +
Sbjct: 102 IPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPP-GKNIGSLLRSHYERI 160
Query: 61 LRDYE 65
+ YE
Sbjct: 161 VYPYE 165
Score = 69 (29.3 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 33/151 (21%), Positives = 64/151 (42%)
Query: 213 EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272
E H+ + L G+ ++ R+ L + E + + +AL+ + R +++ R
Sbjct: 1409 ENHSIWQLLQAGQPPDLKRVQTLLELEKAERHGSRTRGRALERRRRRKVD----RGGEPD 1464
Query: 273 GQVISDAIPLQQRLPGADVDMVEVDTKLDE-TGGDSPQTP-DNESSSGVSDFEDDKTVEK 330
+ P + R G + + V+ + +L+E TGG+ P P N S + ED +E
Sbjct: 1465 DPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEVPPVPFPNSGSPSIQ--EDQDGLEP 1522
Query: 331 DTEMEESPGVGLGTETSNVDLEISAEEPAFE 361
E T TS + L ++P+ +
Sbjct: 1523 VLEAGSDTSAPFSTLTSRL-LMSCPQQPSLQ 1552
Score = 39 (18.8 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 145 TLKGVLYQAPQYPIH 159
TL+ ++++A P+H
Sbjct: 1001 TLEAIIHEAENIPVH 1015
>MGI|MGI:2181659 [details] [associations]
symbol:Tox "thymocyte selection-associated high mobility
group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
Length = 526
Score = 115 (45.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY++K
Sbjct: 257 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEA 316
Query: 255 DKERYRIEMEDYRERLKTGQVISDAIPLQQRLP 287
K+ Y ++ YR L + +D + ++ P
Sbjct: 317 AKKEYLKQLAAYRASL-VSKSYTDPVDVKTSQP 348
Score = 45 (20.9 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 82 NAVSAPGTAQPSPDIQSAVQQPRI-NAAVLP--EARPASSGG 120
N+ S PG+ +P S+V + +A+ + E RPAS G
Sbjct: 203 NSPSPPGSKSATPSPSSSVHEDECEDASKINGGEKRPASDMG 244
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 118 (46.6 bits), Expect = 0.00062, P = 0.00062
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 251 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 310
Query: 255 DKERYRIEMEDYRERL--KTGQVISDAIPL---QQRLPGADV-DMVEVDTKLDETG--GD 306
K+ Y + YR L K ++A + QQ L ++ + ++T L + G
Sbjct: 311 AKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSA 370
Query: 307 SPQT 310
SPQT
Sbjct: 371 SPQT 374
>UNIPROTKB|P17480 [details] [associations]
symbol:UBTF "Nucleolar transcription factor 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
HOVERGEN:HBG008708 EMBL:X53390 EMBL:X53461 EMBL:X56687
EMBL:AK291733 EMBL:AK292518 EMBL:BC042297 IPI:IPI00014533
IPI:IPI00220833 PIR:S09318 PIR:S18193 RefSeq:NP_001070151.1
RefSeq:NP_001070152.1 RefSeq:NP_055048.1 UniGene:Hs.89781 PDB:1K99
PDB:1L8Y PDB:1L8Z PDB:2HDZ PDBsum:1K99 PDBsum:1L8Y PDBsum:1L8Z
PDBsum:2HDZ ProteinModelPortal:P17480 SMR:P17480 DIP:DIP-640N
IntAct:P17480 MINT:MINT-1348764 STRING:P17480 PhosphoSite:P17480
DMDM:136652 PaxDb:P17480 PRIDE:P17480 Ensembl:ENST00000302904
Ensembl:ENST00000343638 Ensembl:ENST00000393606
Ensembl:ENST00000436088 Ensembl:ENST00000526094
Ensembl:ENST00000529383 Ensembl:ENST00000533177 GeneID:7343
KEGG:hsa:7343 UCSC:uc002igc.3 UCSC:uc010czs.3 CTD:7343
GeneCards:GC17M042282 HGNC:HGNC:12511 HPA:CAB004611 HPA:HPA006385
MIM:600673 neXtProt:NX_P17480 PharmGKB:PA37158 HOGENOM:HOG000232068
InParanoid:P17480 OMA:CSQRWKL OrthoDB:EOG4V9TQ9 PhylomeDB:P17480
ChiTaRS:UBTF EvolutionaryTrace:P17480 GenomeRNAi:7343 NextBio:28746
ArrayExpress:P17480 Bgee:P17480 CleanEx:HS_UBTF
Genevestigator:P17480 GermOnline:ENSG00000108312 Uniprot:P17480
Length = 764
Score = 122 (48.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 45/187 (24%), Positives = 85/187 (45%)
Query: 201 KPNRSGYNFFFAE--QHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKER 258
KP +GY F E + L L P K+R + IG W ++ +S+K Y++ A + +++
Sbjct: 569 KPPMNGYQKFSQELLSNGELNHL-PLKERMVE--IGSRWQRISQSQKEHYKKLAEEQQKQ 625
Query: 259 YRIEMEDYRERLKTGQVISDAIPLQQRLPGADVDMVEVDTKLDETGGDSPQTPDNESSSG 318
Y++ ++ + + L D ++ + M TKL S +T S
Sbjct: 626 YKVHLDLWVKSLSP----QDRAAYKEYISNKRKSM----TKLRGPNPKSSRTTLQSKSES 677
Query: 319 VSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPAFELPKAEENAKDKNVENVS 378
D E+D+ E + E EE G +E E S+E+ + + + EE+ +D++ +
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 737
Query: 379 DDIVRND 385
D+ N+
Sbjct: 738 DEDEDNE 744
Score = 41 (19.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 54 RKYYQSLLRDYEQ 66
RK Y+ ++RDY Q
Sbjct: 253 RKEYEEIMRDYIQ 265
>FB|FBgn0004795 [details] [associations]
symbol:retn "retained" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=NAS;IMP] [GO:0070491 "repressing transcription
factor binding" evidence=IPI] [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0009880 "embryonic pattern specification" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0007435 "salivary gland morphogenesis"
evidence=NAS] [GO:0042063 "gliogenesis" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0007431 "salivary gland development" evidence=NAS] [GO:0045924
"regulation of female receptivity" evidence=IMP] [GO:0007411 "axon
guidance" evidence=IMP] [GO:0008049 "male courtship behavior"
evidence=IMP] InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011
SMART:SM00501 EMBL:AE013599 GO:GO:0005634 GO:GO:0007411
GO:GO:0045893 GO:GO:0009952 GO:GO:0007435 GO:GO:0048477
GO:GO:0003700 GO:GO:0006351 GO:GO:0000122 GO:GO:0007517
GO:GO:0045924 GO:GO:0008049 GO:GO:0000976 GO:GO:0009880
GO:GO:0042063 Gene3D:1.10.150.60 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 eggNOG:NOG327790 InterPro:IPR023334
PROSITE:PS51486 EMBL:U62542 EMBL:AY118955 PIR:JC6093
RefSeq:NP_476864.2 RefSeq:NP_788434.1 UniGene:Dm.20640 PDB:1C20
PDB:1KQQ PDBsum:1C20 PDBsum:1KQQ ProteinModelPortal:Q24573
SMR:Q24573 STRING:Q24573 PaxDb:Q24573 EnsemblMetazoa:FBtr0072073
GeneID:45976 KEGG:dme:Dmel_CG5403 CTD:56729 FlyBase:FBgn0004795
InParanoid:Q24573 OMA:MEYLQLI OrthoDB:EOG4C2FTG PhylomeDB:Q24573
EvolutionaryTrace:Q24573 GenomeRNAi:45976 NextBio:838560
Bgee:Q24573 GermOnline:CG5403 Uniprot:Q24573
Length = 911
Score = 127 (49.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ LDL+ L+ V ARGG+ +I ++ W+E+ + PS+ T+A+F LR Y
Sbjct: 317 LPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 376
Query: 61 LRDYE 65
L YE
Sbjct: 377 LYPYE 381
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 345 ETSNVDLEISAEEPAFELPKA-EENAKDKNVENVSDDIVRNDM 386
E V+ E EE E PKA EE + V+ ++D V DM
Sbjct: 838 EAPTVEEEKDEEEE--EEPKAAEEESHRSPVKQENED-VDQDM 877
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 117 (46.2 bits), Expect = 0.00079, P = 0.00079
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 309
Query: 255 DKERYRIEMEDYRERL--KTGQVISDAIPL---QQRLPGADV-DMVEVDTKLDETGG--D 306
K+ Y + YR L K ++A + QQ L ++ + ++T L + G
Sbjct: 310 AKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTSLSQHGTVPA 369
Query: 307 SPQT 310
SPQT
Sbjct: 370 SPQT 373
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 309
Query: 255 DKERYRIEMEDYRERL--KTGQVISDAIPL---QQRLPGADV-DMVEVDTKLDETGG--D 306
K+ Y + YR L K ++A + QQ L ++ + ++T L + G
Sbjct: 310 AKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTSLSQHGTVPA 369
Query: 307 SPQT 310
SPQT
Sbjct: 370 SPQT 373
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 256 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 315
Query: 255 DKERYRIEMEDYRERL--KTGQVISDAIPL---QQRLPGADVDM-VEVDTKLDE--TGGD 306
K+ Y + YR L K ++A + QQ L ++ + ++T L + T
Sbjct: 316 AKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLSSSLILNTSLSQHATVSA 375
Query: 307 SPQT 310
SPQT
Sbjct: 376 SPQT 379
>ZFIN|ZDB-GENE-050809-105 [details] [associations]
symbol:arid4a "AT rich interactive domain 4A
(RBP1-like)" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00298 SMART:SM00501
InterPro:IPR002999 ZFIN:ZDB-GENE-050809-105 GO:GO:0005634
GO:GO:0003677 SMART:SM00333 Gene3D:1.10.150.60 SUPFAM:SSF46774
InterPro:IPR016197 InterPro:IPR012603 InterPro:IPR025995
Pfam:PF08169 Pfam:PF11717 SUPFAM:SSF54160
GeneTree:ENSGT00510000046413 EMBL:CU076099 EMBL:FP102895
IPI:IPI00997065 Ensembl:ENSDART00000128291
Ensembl:ENSDART00000151847 Uniprot:F1QWQ1
Length = 1332
Score = 98 (39.6 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 32/134 (23%), Positives = 58/134 (43%)
Query: 2 PIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61
P++G K+L+L +LF V GG + I WK++ P + AS+ ++ Y+ L
Sbjct: 333 PVLGYKDLNLFKLFRLVHIHGGCDNIESGSIWKQIYMDLGIPVLNSAASYNVKTAYRKYL 392
Query: 62 RDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPE--ARPASSG 119
+E+ Y +Q ++ N P I+S ++ N ++ + A P +S
Sbjct: 393 YGFEE-YCRSAQIQFRTVHHNE-PRPDVQPEVQSIKSVTKESENNDEMMQQVTAEPGTSE 450
Query: 120 GSPVIGVIDGKFES 133
P + ES
Sbjct: 451 DKPAADADESDAES 464
Score = 71 (30.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 307 SPQTPDNESSSGVSDFEDDKTVEKDTEMEESPGVGLGTETSNVDLEISAEEPAFELPKAE 366
S +PD ES S S E D T+E D+ E G+G T + D S+ + L +
Sbjct: 1085 SAPSPD-ESHSTKS--ESDATIEVDSVAESQEGLGENESTHSFDASASSSNSSISLQ--D 1139
Query: 367 ENAKDKNVENVSD 379
+ KD+ + + D
Sbjct: 1140 RDGKDRGQKRLLD 1152
>FB|FBgn0042085 [details] [associations]
symbol:Bap170 "Brahma associated protein 170kD" species:7227
"Drosophila melanogaster" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006911 "phagocytosis, engulfment"
evidence=IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IGI;IMP] [GO:0031936 "negative regulation of chromatin
silencing" evidence=IGI] [GO:0050821 "protein stabilization"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0008586 "imaginal disc-derived
wing vein morphogenesis" evidence=IMP] [GO:0042059 "negative
regulation of epidermal growth factor receptor signaling pathway"
evidence=IGI] InterPro:IPR001606 InterPro:IPR003150
InterPro:IPR015880 Pfam:PF01388 PROSITE:PS51011 PROSITE:PS51526
SMART:SM00355 EMBL:AE013599 GO:GO:0050821 GO:GO:0006911
GO:GO:0003677 GO:GO:0008586 GO:GO:0008270 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0031936 GO:GO:0005700 GO:GO:0007480
GO:GO:0042059 Gene3D:1.10.150.60 SUPFAM:SSF46774 eggNOG:NOG311317
KO:K11765 GO:GO:0008587 GO:GO:0035060 GeneTree:ENSGT00390000016138
RefSeq:NP_610216.1 ProteinModelPortal:A1Z6M0 SMR:A1Z6M0
STRING:A1Z6M0 PaxDb:A1Z6M0 PRIDE:A1Z6M0 EnsemblMetazoa:FBtr0086107
GeneID:35560 KEGG:dme:Dmel_CG3274 UCSC:CG3274-RA CTD:35560
FlyBase:FBgn0042085 InParanoid:A1Z6M0 OMA:HAIKRHA OrthoDB:EOG4HDR8G
PhylomeDB:A1Z6M0 GenomeRNAi:35560 NextBio:794035 Bgee:A1Z6M0
Uniprot:A1Z6M0
Length = 1688
Score = 115 (45.5 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 4 IGGKELDLHRLFVEVTARGGIEKIIKERRWKEV-TAIFNFPSTATNASFVLRKYYQSLLR 62
I GK +DL++L+ EVT RGG K+ W EV +A+ N + ++ Y+ L
Sbjct: 90 ISGKHVDLYKLYNEVTERGGFNKVTMRDEWDEVYSAMETLRERCVNGTASIKHIYRRYLD 149
Query: 63 DYEQIYFF 70
YE++ FF
Sbjct: 150 KYERLNFF 157
Score = 55 (24.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 79 PSTNAVSA-PGTAQPSPDIQ---SAVQQPRINAAVLPEARPASSGGSPVIGVIDGKFESG 134
P V+A PG + P P +Q S +QQ I+ P + + G VI G +
Sbjct: 1228 PQQRLVAAKPGASLPIPQLQQHQSIIQQHIISGPSTPTSTVGGTVGGEKRQVILGGIKET 1287
Query: 135 YLVTVT 140
L+T T
Sbjct: 1288 TLITQT 1293
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.131 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 388 375 0.00088 117 3 11 23 0.50 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 148
No. of states in DFA: 582 (62 KB)
Total size of DFA: 226 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.95u 0.09s 43.04t Elapsed: 00:00:02
Total cpu time: 42.97u 0.09s 43.06t Elapsed: 00:00:02
Start: Sat May 11 08:40:02 2013 End: Sat May 11 08:40:04 2013
WARNINGS ISSUED: 1