BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046368
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/353 (61%), Positives = 252/353 (71%), Gaps = 23/353 (6%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PIIGG++LDLH+LFVEVT+RGGI KI+ ERRWKEVTA F FP TATNAS+VLRKYY SL
Sbjct: 52 VPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSL 111
Query: 61 LRDYEQIYFFRSQ-----DSWQGPSTNAVSAPGTAQPSPDIQSAV--QQPRINAAVLPEA 113
L +YEQIYFFRS DS Q PS G +PS ++Q+ QP+IN A E
Sbjct: 112 LNNYEQIYFFRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTA---EF 168
Query: 114 RPASSGGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQ----------APQYPIHQVPS 163
S GS V+GVIDGKFESGYLVTVTIGSE LKGVLYQ PQ +P+
Sbjct: 169 LGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPN 228
Query: 164 SYNVINNNNATAHAVSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHP 223
+ N+ N A V+ +RRRRRKKSEIKRRDP HPKPNRSGYNFFFAEQHARLKPLHP
Sbjct: 229 TLNISANPQGVAGGVT--KRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHP 286
Query: 224 GKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTGQVISDAIPLQ 283
GKDR+ISRMIGELWNKL E EK +YQ KA++DKERYR EMEDYRE+ K GQ+IS+A+PLQ
Sbjct: 287 GKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQ 346
Query: 284 QRLPGADVDMVEVDTKLDETGGDSPQTPDNESSSGVSDFEDDKTVEKDTEMEE 336
QRLP +VDM E D +DE D + + SS DD+++E D E+EE
Sbjct: 347 QRLPEQNVDMAEADLPIDEVEEDDEEGDSSGSSGESEP-HDDQSIETDPELEE 398
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/277 (45%), Positives = 171/277 (61%), Gaps = 24/277 (8%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P +GG LDLHRLF+EVT+RGGIE+++K+R+WKEV F+FP+T T+ASFVLRKYY
Sbjct: 63 VPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKF 122
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGG 120
L E +Y+ S + A+ + P+P+ + +P++ G
Sbjct: 123 LFQLEHVYYLEKPVSSLQSTDEALKSLANESPNPE--EGIDEPQV--------------G 166
Query: 121 SPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAVSG 180
V G IDGKF+SGYLVT+ +GS+ LKGVLY PQ P T A+
Sbjct: 167 YEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQS--------QQTMETPSAIVQ 218
Query: 181 VQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKL 240
+RR RKKS++ D PK +RSGYNFFFAEQ+ARLKP + G++R I++ IG +W+ L
Sbjct: 219 SSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNL 278
Query: 241 KESEKAVYQEKALKDKERYRIEMEDYRERLKTGQVIS 277
ESEK VYQ+K +KD ERYRIEM +Y+ ++G S
Sbjct: 279 TESEKQVYQDKGVKDVERYRIEMLEYKSSHESGATAS 315
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 175/273 (64%), Gaps = 9/273 (3%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP+IGGKELDLH L+VEVT RGG EK++ E++W+EV +F F +T T+ASFVLRK+Y +L
Sbjct: 61 IPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNL 120
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASSGG 120
L YEQ++ F ++ GP + + A A PS + A+ + + P S G
Sbjct: 121 LFHYEQVHLFTAR----GPLLHPI-ATFHANPSTSKEMALVEYTPPSIRYHNTHPPSQGS 175
Query: 121 SPV--IGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAV 178
S IG I+GKF+ GYLV V +GSE L GVLY + Q P++ V+NN
Sbjct: 176 SSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYHSAQPGPSSSPTA--VLNNAVVPYVET 233
Query: 179 SGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWN 238
+RR +++ +R DP +PKPNRSGYNFFFAE+H +LK L+P K+RE +++IGE W+
Sbjct: 234 GRRRRRLGKRRRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWS 293
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271
L E+ VYQ+ LKDKERY+ E+ +YRE L+
Sbjct: 294 NLSTEERMVYQDIGLKDKERYQRELNEYRETLR 326
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 155/275 (56%), Gaps = 47/275 (17%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+GGK LDLHRLF EVT+RGG+EK+IK+RR KEV FNF +T TN++FVLRK Y +
Sbjct: 57 IPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKM 116
Query: 61 LRDYEQIYFFRSQDS--WQGPSTNAVSAPGTAQPSPDIQSAVQQPRINAAVLPEARPASS 118
L ++E +Y+F++ S W+ + +A D Q E +P
Sbjct: 117 LFEFEHLYYFQAPLSTFWEKEKALKLLIEKSANRDKDSQ--------------ELKP--- 159
Query: 119 GGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPIHQVPSSYNVINNNNATAHAV 178
G+ + G+IDGKFESGYL++ +GSE LKG+LY H P
Sbjct: 160 -GTVITGIIDGKFESGYLISTKVGSEKLKGMLY-------HISP---------------- 195
Query: 179 SGVQRRRRRKKSEIKRRDPAH-PKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELW 237
+ +R +KK++ + D PK R+GYNFF AEQ R+K + G+ + G +W
Sbjct: 196 ---ETKRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAGQKVSSPKNFGNMW 252
Query: 238 NKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272
L ES++ VY EK+ +D +RY++E+ YR +++
Sbjct: 253 TNLSESDRKVYYEKSREDGKRYKMEILQYRSLMES 287
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP +GGKELDLH L+ VT GG K+ ++ +W E+ FNFP + +NA+F L++YY
Sbjct: 37 IPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRY 96
Query: 61 LRDYEQIYFFRSQD 74
L YE+++ F D
Sbjct: 97 LEKYEKVHHFGEDD 110
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ V GG+ +II ++ W+E+T N PS+ T+A+F LR YQ
Sbjct: 205 IPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQKY 264
Query: 61 LRDYE 65
L DYE
Sbjct: 265 LYDYE 269
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 233 IPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 292
Query: 61 LRDYE 65
L YE
Sbjct: 293 LYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 236 IPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 295
Query: 61 LRDYE 65
L YE
Sbjct: 296 LYPYE 300
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 134 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 193
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQ 91
L YE T A+S+PG Q
Sbjct: 194 LYPYEC-------------ETRALSSPGELQ 211
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ + LDL+ LF VTA+GG+ ++I + W+EVT + P+T T+A+F LR Y
Sbjct: 137 VPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKY 196
Query: 61 LRDYEQIYFFRSQDSWQGPSTNAVSAPGTAQ 91
L YE T A+S+PG Q
Sbjct: 197 LYPYEC-------------ETRALSSPGELQ 214
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 267 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 326
Query: 61 LRDYE 65
L YE
Sbjct: 327 LYPYE 331
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL L+V VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 262 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 321
Query: 61 LRDYE 65
L YE
Sbjct: 322 LYPYE 326
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ V A+GG+ ++I +++W+E+T N P++ T+A+F LR Y
Sbjct: 226 IPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNLPASITSAAFTLRTQYMKY 285
Query: 61 LRDYE 65
L YE
Sbjct: 286 LYPYE 290
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 237 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 296
Query: 61 LRDYE 65
L YE
Sbjct: 297 LYAYE 301
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ +II ++ W+E+T N P++ T+A+F LR Y
Sbjct: 239 IPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 298
Query: 61 LRDYE 65
L YE
Sbjct: 299 LYAYE 303
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL+ L+ VT +GG+ ++I ++ W+E+T N P++ T+A+F LR Y
Sbjct: 256 IPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKY 315
Query: 61 LRDYE 65
L YE
Sbjct: 316 LYPYE 320
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IPI+ + LDL++L+ V +GG+ ++I ++ W+E+T N PS+ T+A+F LR Y
Sbjct: 273 IPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNLPSSITSAAFTLRTQYMKY 332
Query: 61 LRDYE 65
L +E
Sbjct: 333 LYPFE 337
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+PI+ LDL+ L+ V ARGG+ +I ++ W+E+ + PS+ T+A+F LR Y
Sbjct: 317 LPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 376
Query: 61 LRDYE 65
L YE
Sbjct: 377 LYPYE 381
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 187 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEK 245
RKK++ K++DP PK S Y FF E ++ +PG ++ R++GE W L E EK
Sbjct: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
Query: 246 AVYQEKALKDKERYRIEMEDY 266
A Y+ KA DK+RY E E Y
Sbjct: 65 APYEAKAEADKKRYESEKELY 85
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 184 RRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKE 242
R + K+ E K++DP PK S Y FF E +++ +PG ++ +M+GE W L +
Sbjct: 9 RTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSD 68
Query: 243 SEKAVYQEKALKDKERYRIEMEDY 266
SE+ Y+EKA DK+RY E Y
Sbjct: 69 SERRPYEEKAAADKKRYEDEKASY 92
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
P I + LDL+RL++ V RGG ++ K + WK++ + +++A++ LRK+Y
Sbjct: 1024 CPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGI-GASSSAAYTLRKHYTKN 1082
Query: 61 LRDYEQIYFFR 71
L +E +F R
Sbjct: 1083 LLTFE-CHFDR 1092
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ FF + LK +PG ++ R++GE W L EK Y+ KA
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQA 613
Query: 255 DKERYRIEMEDYR 267
DK+RY+ E+ Y+
Sbjct: 614 DKKRYKDEISGYK 626
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEK 251
+++DP PK N S + FF E ++K +P ++ ++G+ W +L +E+ Y+EK
Sbjct: 9 RKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEK 68
Query: 252 ALKDKERYRIEMEDYRERLKTGQ 274
A +DKERY E ++Y +L G+
Sbjct: 69 ARQDKERYERERKEYDTKLANGE 91
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P P E S+ E W + EK+ + E A DK RY
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 262 EMEDY 266
EM+DY
Sbjct: 74 EMKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L +SEK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P P E S+ E W + EK+ + E A DK RY
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 262 EMEDY 266
EM+DY
Sbjct: 74 EMKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L + EK Y KA K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 148 LKEKYEKDVADYKSKGK 164
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P P E S+ E W + EKA + E A DK RY
Sbjct: 14 SAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 72
Query: 262 EMEDY 266
EM+DY
Sbjct: 73 EMKDY 77
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK SG+ F +E ++K +PG ++++ +GE+WN L ++EK Y KA K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P P E S+ E W + EK+ + E A DK RY
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 262 EMEDY 266
EM+DY
Sbjct: 74 EMKDY 78
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKA 252
++DP PK S Y FF EQ ++ +PG ++ +++GE W L E ++A Y+ KA
Sbjct: 18 KKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKA 77
Query: 253 LKDKERYRIEMEDY 266
DK+RY E + Y
Sbjct: 78 AADKKRYEDEKQAY 91
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 173 ATAHAVSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISR 231
A + V++RR +K DP PK S Y FF EQ ++ +PG ++ +
Sbjct: 6 AKSKTTGKVEKRRAKK-------DPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGK 58
Query: 232 MIGELWNKLKESEKAVYQEKALKDKERYRIEMEDY 266
++GE W L + ++A Y+ KA DK+RY E + Y
Sbjct: 59 ILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 180 GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR-EISRMIGELWN 238
G + R+RKK RD PK +GY F E+ +L+ P EI+RM+G W+
Sbjct: 85 GWSKGRKRKKP---LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWS 141
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYR 267
KL EK Y ++A +DKERY E+E Y+
Sbjct: 142 KLPPEEKQRYLDEADRDKERYMKELEQYQ 170
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEK 251
K++DP PK S Y FF + +++ +PG ++ +M+GE W L + E+ Y++K
Sbjct: 20 KKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDK 79
Query: 252 ALKDKERYRIEMEDYRERLKTGQVISD 278
A DK+RY ED + K G+ D
Sbjct: 80 AAADKKRY----EDEKAAYKAGEAEED 102
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 180 GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR-EISRMIGELWN 238
G + R+RKK RD PK +GY F E+ +L+ P EI+RM+G W+
Sbjct: 86 GWSKGRKRKKP---LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWS 142
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYR 267
KL EK Y ++A +DKERY E+E Y+
Sbjct: 143 KLPPEEKQRYLDEADRDKERYMKELEQYQ 171
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 180 GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR-EISRMIGELWN 238
G + R+RK+S RD PK +GY F E+ +L+ P EI+R++G W+
Sbjct: 84 GWTKGRKRKRSP---RDNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWS 140
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYR 267
KL EK Y ++A KDKERY E++ Y+
Sbjct: 141 KLPAHEKQHYLDEAEKDKERYTKELQQYQ 169
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 180 GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR-EISRMIGELWN 238
G + R+RKK RD PK +GY F E+ +L+ P EI+RM+G W+
Sbjct: 87 GWAKGRKRKKP---LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWS 143
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYR 267
KL EK Y ++A +DKERY E+E Y+
Sbjct: 144 KLPPEEKRRYLDEADRDKERYMRELEQYQ 172
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP PK S + F +E ++K +PG ++++ +GE+WN L + EK Y KA K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 255 DKERYRIEMEDYRERLK 271
KE+Y ++ DY+ + K
Sbjct: 149 LKEKYEKDVADYKSKGK 165
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P P E S+ E W + EKA + E A DK RY
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 262 EMEDY 266
EM+DY
Sbjct: 74 EMKDY 78
>sp|Q9USU7|YHHB_SCHPO HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC28F2.11 PE=1 SV=1
Length = 310
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 174 TAHAVSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REIS 230
T+ AV+ + +R K RDPA PK S YN F Q + +K K +E++
Sbjct: 97 TSEAVASMTPNKR------KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVN 150
Query: 231 RMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDY 266
+ + E W L E ++ Y+E+A K +E Y EM Y
Sbjct: 151 KAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAY 186
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 180 GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR-EISRMIGELWN 238
G + R+RK+S RD PK +GY F E+ +L+ P EI+R++G W+
Sbjct: 84 GWNKGRKRKRSP---RDNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWS 140
Query: 239 KLKESEKAVYQEKALKDKERYRIEMEDYR 267
KL EK Y ++A KDKERY E++ Y+
Sbjct: 141 KLPAHEKQHYLDEAEKDKERYTKELQKYQ 169
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P +G K LDL+RL+V V GG+ ++ K ++W+E+ N T+++A+ L+K Y
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1100
Query: 61 LRDYE 65
L +E
Sbjct: 1101 LYAFE 1105
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 195 RDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDR--EISRMIGELWNKLKESEKAVYQEKA 252
+DP PK S + F A+ + K HP + + GE W L E EKA Y ++A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 253 LKDKERYRIEMEDYRERL 270
LK KE Y I ++ Y ++L
Sbjct: 100 LKKKEEYEITLQAYNKKL 117
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
+P +G K LDL+RL+V V GG+ ++ K ++W+E+ N T+++A+ L+K Y
Sbjct: 1041 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1099
Query: 61 LRDYE 65
L +E
Sbjct: 1100 LYAFE 1104
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 2 PIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61
P G+ L++ +L+ V GG E + + W++V FN P T T S+ R +Y+ L
Sbjct: 130 PKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPPKTCTTVSYTFRNFYEKAL 189
Query: 62 RDYEQI 67
+YE+
Sbjct: 190 LEYEKC 195
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 177 AVSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGE 235
A G R+RK++ ++DP PK S + F+ ++ ++ HP K ++++ +G+
Sbjct: 115 AYGGEDAMRKRKRA---KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGK 171
Query: 236 LWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271
+W + + K +Y++KA DK+RY EM +Y+ ++
Sbjct: 172 MWKLVPQETKDMYEQKAQADKDRYADEMRNYKAEMQ 207
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 205 SGYNFFFA---EQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRI 261
S Y FF E+H + P + EIS+ E W + + EK + E A KD ERY+
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQA 109
Query: 262 EM 263
E+
Sbjct: 110 EV 111
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 309
Query: 255 DKERYRIEMEDYRERL 270
K+ Y + YR L
Sbjct: 310 AKKEYLKALAAYRASL 325
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 250 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 309
Query: 255 DKERYRIEMEDYRERL 270
K+ Y + YR L
Sbjct: 310 AKKEYLKALAAYRASL 325
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254
DP P+ S Y FF + A +K +P E+S+++ +W+ L E +K VY+ K
Sbjct: 251 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEA 310
Query: 255 DKERYRIEMEDYRERL 270
K+ Y + YR L
Sbjct: 311 AKKEYLKALAAYRASL 326
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 181 VQRRRRRKKSEIKRRDPA---HPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELW 237
+ ++R +KK+ IK+R+ PK RS YN F AE R + G + + I E W
Sbjct: 133 IMQKRLKKKALIKKRELTMLGKPKRPRSAYNIFIAE---RFQEAKDGPSQVKLKTINENW 189
Query: 238 NKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270
L S+K VY + A DK RY EM+ + E++
Sbjct: 190 KNLSSSQKQVYIQLAEDDKVRYYNEMKSWEEQM 222
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
PK + Y F EQ K +P K+ E+ + I ELW +L +SEK +Y++ D +
Sbjct: 49 FPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQ 108
Query: 258 RYRIEMEDYRERLKTGQVIS-DAIPLQQRL 286
Y+ E+ +E+L Q++S + +Q+RL
Sbjct: 109 VYKEEVNRIQEQLTPSQMVSLEKEIMQKRL 138
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHPG-KDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
+PKP S Y F A+Q LK +PG ++ I + +G++W+ + K Y++KA +DK
Sbjct: 117 YPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDKA 176
Query: 258 RYRIEMEDYR 267
R+R E+++Y+
Sbjct: 177 RFRREVDEYK 186
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 194 RRDPAHPKPNRSGYNFF---FAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQE 250
++D PK + + FF F +H+ L + E+S+ G W +L E+ VY+E
Sbjct: 200 KKDSNAPKRAMTSFMFFSSDFRSKHSDLSIV------EMSKAAGAAWKELGPEERKVYEE 253
Query: 251 KALKDKERYRIEM 263
A KDKERY+ EM
Sbjct: 254 MAEKDKERYKREM 266
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 181 VQRRRRRKKSEIKRRDP---AHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELW 237
+ ++R +KK+ IK+R+ PK RS YN F AE R + G + + I E W
Sbjct: 133 IMQKRLKKKALIKKRELTMLGKPKRPRSAYNIFIAE---RFQEARDGTSQVKLKAINENW 189
Query: 238 NKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270
L S+K VY + A DK RY EM+ + E++
Sbjct: 190 KNLSNSQKQVYIQLAKDDKIRYYNEMKSWEEQM 222
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 199 HPKPNRSGYNFFFAEQHARLKPLHP-GKDREISRMIGELWNKLKESEKAVYQEKALKDKE 257
+PK + Y F EQ K +P K+ E+ + I +LW +L +SEK +Y++ D +
Sbjct: 49 YPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQ 108
Query: 258 RYRIEMEDYRERLKTGQVIS-DAIPLQQRL 286
Y+ E+ +E+L Q++S + +Q+RL
Sbjct: 109 VYKEEINRIQEQLTPSQMVSLEKEIMQKRL 138
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 2 PIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61
P G+ L+ +L+ VT GG +K+ + W++V F P T T S+ R +Y+ L
Sbjct: 518 PKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKAL 577
Query: 62 RDYEQ 66
+YE+
Sbjct: 578 LEYER 582
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60
IP + K LDL+ L V GG E I K+RRW V N+PS N +LR +Y+ +
Sbjct: 102 IPNVERKILDLYSLNKIVMEEGGYEAICKDRRWARVAQRLNYPS-GKNIGSLLRSHYERI 160
Query: 61 LRDYE 65
+ YE
Sbjct: 161 IYPYE 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,386,062
Number of Sequences: 539616
Number of extensions: 6943947
Number of successful extensions: 21141
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 20498
Number of HSP's gapped (non-prelim): 692
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)