Query 046368
Match_columns 388
No_of_seqs 356 out of 1497
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2744 DNA-binding proteins B 99.9 2.3E-22 4.9E-27 209.6 9.2 150 1-157 185-339 (512)
2 PTZ00199 high mobility group p 99.8 3.9E-21 8.6E-26 158.9 9.7 84 184-267 7-93 (94)
3 smart00501 BRIGHT BRIGHT, ARID 99.8 3.6E-20 7.7E-25 152.4 6.6 69 1-69 24-92 (93)
4 cd01389 MATA_HMG-box MATA_HMG- 99.8 4.6E-19 1E-23 140.7 6.9 73 199-271 1-74 (77)
5 PF01388 ARID: ARID/BRIGHT DNA 99.8 6.7E-19 1.4E-23 144.0 5.5 65 1-65 28-92 (92)
6 cd01388 SOX-TCF_HMG-box SOX-TC 99.7 2.7E-18 6E-23 134.7 6.6 70 199-268 1-71 (72)
7 KOG0527 HMG-box transcription 99.7 7.1E-18 1.5E-22 167.4 6.0 85 194-278 57-142 (331)
8 PF00505 HMG_box: HMG (high mo 99.7 3.1E-17 6.8E-22 126.3 8.3 68 200-267 1-69 (69)
9 cd01390 HMGB-UBF_HMG-box HMGB- 99.7 1.1E-16 2.5E-21 122.0 8.2 64 200-263 1-65 (66)
10 PF09011 HMG_box_2: HMG-box do 99.7 1.2E-16 2.7E-21 125.7 8.7 71 197-267 1-73 (73)
11 smart00398 HMG high mobility g 99.7 1.8E-16 3.9E-21 121.6 8.0 69 199-267 1-70 (70)
12 KOG3248 Transcription factor T 99.7 3.7E-16 8.1E-21 152.4 11.4 151 117-274 108-267 (421)
13 COG5648 NHP6B Chromatin-associ 99.6 2.9E-16 6.3E-21 145.2 8.5 87 189-275 60-147 (211)
14 KOG0381 HMG box-containing pro 99.6 2.2E-15 4.7E-20 123.8 9.5 75 196-270 17-95 (96)
15 cd00084 HMG-box High Mobility 99.6 5.4E-15 1.2E-19 112.1 8.3 64 200-263 1-65 (66)
16 KOG0526 Nucleosome-binding fac 99.5 6E-14 1.3E-18 144.0 6.9 75 189-267 525-600 (615)
17 KOG4715 SWI/SNF-related matrix 99.3 2.3E-12 5E-17 125.2 8.9 85 193-277 58-143 (410)
18 KOG0528 HMG-box transcription 99.2 4.9E-12 1.1E-16 128.9 3.0 80 194-273 320-400 (511)
19 KOG2746 HMG-box transcription 98.6 3E-08 6.4E-13 105.0 4.9 73 190-262 172-247 (683)
20 KOG2510 SWI-SNF chromatin-remo 98.6 3.1E-08 6.7E-13 101.8 2.9 68 1-75 315-382 (532)
21 PF14887 HMG_box_5: HMG (high 97.6 0.0002 4.2E-09 57.2 5.9 71 199-269 3-73 (85)
22 PF04690 YABBY: YABBY protein; 96.8 0.0019 4.1E-08 59.1 5.1 48 194-241 116-164 (170)
23 COG5648 NHP6B Chromatin-associ 96.2 0.005 1.1E-07 57.9 4.1 67 198-264 142-209 (211)
24 PF06382 DUF1074: Protein of u 95.9 0.043 9.4E-07 50.5 8.7 48 204-255 83-131 (183)
25 PF08073 CHDNT: CHDNT (NUC034) 88.7 0.45 9.8E-06 35.9 2.9 39 204-242 13-52 (55)
26 PF04769 MAT_Alpha1: Mating-ty 88.3 0.89 1.9E-05 42.9 5.3 56 193-254 37-93 (201)
27 TIGR01624 LRP1_Cterm LRP1 C-te 84.5 0.71 1.5E-05 33.8 1.9 31 122-152 16-47 (50)
28 PF05142 DUF702: Domain of unk 81.8 0.92 2E-05 41.0 2.0 33 121-153 117-149 (154)
29 PF06244 DUF1014: Protein of u 79.5 1.9 4.1E-05 37.6 3.2 45 198-242 70-116 (122)
30 PF00249 Myb_DNA-binding: Myb- 79.4 3.2 6.9E-05 29.6 3.8 38 13-61 11-48 (48)
31 TIGR03481 HpnM hopanoid biosyn 66.1 10 0.00022 35.5 4.8 44 225-268 64-110 (198)
32 PRK15117 ABC transporter perip 60.2 22 0.00048 33.6 6.0 46 223-268 66-114 (211)
33 PF13921 Myb_DNA-bind_6: Myb-l 52.4 18 0.00039 26.6 3.2 36 13-61 8-43 (60)
34 cd00167 SANT 'SWI3, ADA2, N-Co 50.9 24 0.00052 23.3 3.4 36 13-60 9-44 (45)
35 PF05494 Tol_Tol_Ttg2: Toluene 43.7 41 0.00088 30.2 4.7 45 224-268 37-84 (170)
36 KOG0493 Transcription factor E 40.2 1.2E+02 0.0026 30.1 7.4 19 201-222 247-265 (342)
37 PF12776 Myb_DNA-bind_3: Myb/S 39.0 36 0.00079 27.1 3.3 62 11-72 10-73 (96)
38 PF13873 Myb_DNA-bind_5: Myb/S 37.8 41 0.00088 26.0 3.3 55 9-63 14-71 (78)
39 PF09441 Abp2: ARS binding pro 36.1 66 0.0014 29.6 4.7 41 1-45 45-85 (175)
40 smart00717 SANT SANT SWI3, AD 33.6 67 0.0015 21.4 3.6 26 31-61 22-47 (49)
41 PF11304 DUF3106: Protein of u 33.2 1.5E+02 0.0033 25.0 6.3 41 227-267 10-57 (107)
42 KOG2051 Nonsense-mediated mRNA 33.0 1E+02 0.0022 36.0 6.5 30 353-382 944-973 (1128)
43 PF12881 NUT_N: NUT protein N 32.8 97 0.0021 31.3 5.7 67 205-271 230-298 (328)
44 PRK09706 transcriptional repre 32.3 1.4E+02 0.003 25.7 6.1 42 230-271 89-130 (135)
45 COG2854 Ttg2D ABC-type transpo 29.2 59 0.0013 30.9 3.4 43 227-269 74-117 (202)
46 PRK12751 cpxP periplasmic stre 25.1 1.5E+02 0.0032 27.2 5.1 29 228-256 118-146 (162)
47 PRK12750 cpxP periplasmic repr 23.2 1.9E+02 0.0042 26.5 5.5 35 229-263 126-160 (170)
48 PRK10236 hypothetical protein; 22.2 93 0.002 30.3 3.4 27 227-253 116-142 (237)
49 KOG3223 Uncharacterized conser 22.2 44 0.00096 31.5 1.1 52 198-252 162-215 (221)
50 KOG3817 Uncharacterized conser 22.1 49 0.0011 34.2 1.5 24 247-270 321-344 (452)
51 PRK10363 cpxP periplasmic repr 21.4 2E+02 0.0043 26.5 5.2 33 227-259 111-143 (166)
52 PF09026 CENP-B_dimeris: Centr 20.4 34 0.00073 28.8 0.0 12 331-342 35-46 (101)
53 PF10545 MADF_DNA_bdg: Alcohol 20.3 63 0.0014 24.7 1.5 39 27-65 23-64 (85)
54 PF08914 Myb_DNA-bind_2: Rap1 20.3 88 0.0019 24.2 2.3 50 13-66 12-62 (65)
55 KOG0416 Ubiquitin-protein liga 20.3 1.4E+02 0.0029 27.9 3.8 22 253-274 129-150 (189)
56 TIGR01557 myb_SHAQKYF myb-like 20.1 90 0.002 23.5 2.3 44 10-63 9-56 (57)
57 PF00226 DnaJ: DnaJ domain; I 20.0 1.4E+02 0.0031 21.8 3.4 37 212-248 19-63 (64)
58 PTZ00037 DnaJ_C chaperone prot 20.0 1.3E+02 0.0028 31.5 4.2 38 214-251 49-88 (421)
No 1
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.87 E-value=2.3e-22 Score=209.60 Aligned_cols=150 Identities=35% Similarity=0.534 Sum_probs=115.8
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCC-CCCcHHHHHHHHHHHhHHHHHhHhhhccCCCCCCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPS-TATNASFVLRKYYQSLLRDYEQIYFFRSQDSWQGP 79 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~-~~tsas~~Lk~~Y~k~L~~yE~~~~~~~~~~~~~p 79 (388)
||+|+|++||||.||.+|+++||+++|+..++|++|+..|+||+ ++|+++|+||++|+++|++|||.+++....++..|
T Consensus 185 iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~~l~~pt~tiTsaaf~lr~~y~K~L~~ye~~~~~~~~~pln~p 264 (512)
T KOG2744|consen 185 IPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVIDGLNFPTPTITSAAFTLRKQYLKLLFEYECEFEKNRHVPLNSP 264 (512)
T ss_pred ccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999977554444
Q ss_pred CCCCCCCCCCCCCCccchhh-cccc---cccccCCCCCCCCCCCCCceeeccCCcccCceeEEEEecccccccccccCCC
Q 046368 80 STNAVSAPGTAQPSPDIQSA-VQQP---RINAAVLPEARPASSGGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQ 155 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~g~~~~s~~~~~v~g~idgkf~~gYlvtv~~gse~l~gvLy~~~~ 155 (388)
..... .+.++...+.. .... ..+.... ..+.++...+.|+|+|+|.+||++.+.+|++.|.|++|++++
T Consensus 265 ~~~~~----~a~~~~~rE~~~~~~~~~~~~~~~~~---~~~~~~~~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~ 337 (512)
T KOG2744|consen 265 AELSE----EASSSNRREGRRHELSPSKEFQANGP---SEEEPAEAEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPP 337 (512)
T ss_pred ccccc----cccccccccccccccCcchhhccCCc---ccccccccccchhhhccccccCceeccCcchhccCccccccC
Confidence 32211 01111111111 0000 1111111 123345678999999999999999999999999999999976
Q ss_pred CC
Q 046368 156 YP 157 (388)
Q Consensus 156 p~ 157 (388)
..
T Consensus 338 ~~ 339 (512)
T KOG2744|consen 338 DL 339 (512)
T ss_pred cc
Confidence 54
No 2
>PTZ00199 high mobility group protein; Provisional
Probab=99.85 E-value=3.9e-21 Score=158.90 Aligned_cols=84 Identities=39% Similarity=0.653 Sum_probs=77.6
Q ss_pred hhhhhhccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 046368 184 RRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYR 260 (388)
Q Consensus 184 ~r~kkk~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~ 260 (388)
++.+++++++++||++||||+|||+||+.++|..|+.+||++. .+|+++||++|+.|++++|++|+++|+.++++|.
T Consensus 7 ~~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~ 86 (94)
T PTZ00199 7 KVLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYE 86 (94)
T ss_pred CccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555677899999999999999999999999999999985 8999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 046368 261 IEMEDYR 267 (388)
Q Consensus 261 ~em~~Yk 267 (388)
.+|.+|+
T Consensus 87 ~e~~~Y~ 93 (94)
T PTZ00199 87 KEKAEYA 93 (94)
T ss_pred HHHHHHh
Confidence 9999995
No 3
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.81 E-value=3.6e-20 Score=152.43 Aligned_cols=69 Identities=42% Similarity=0.775 Sum_probs=66.4
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYF 69 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~ 69 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|++.||++.+++++++.|+++|.+||++||+++.
T Consensus 24 ~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~yE~~~~ 92 (93)
T smart00501 24 IPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPFERFLR 92 (93)
T ss_pred CCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHHHHHhh
Confidence 589999999999999999999999999999999999999999998999999999999999999999753
No 4
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.77 E-value=4.6e-19 Score=140.75 Aligned_cols=73 Identities=34% Similarity=0.554 Sum_probs=70.5
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k 271 (388)
+||||+||||||+++.|..++.+||+++ .+|+++||++|+.|++++|++|+++|+.++++|.+++++|+...+
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~ 74 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPR 74 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCC
Confidence 5899999999999999999999999999 999999999999999999999999999999999999999998654
No 5
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.76 E-value=6.7e-19 Score=144.04 Aligned_cols=65 Identities=40% Similarity=0.808 Sum_probs=60.8
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHH
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYE 65 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE 65 (388)
+|+|+|++||||+||.+|+++|||++|+.+++|.+|+..||+++.+++++..|+++|++||++||
T Consensus 28 ~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~fE 92 (92)
T PF01388_consen 28 PPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLPFE 92 (92)
T ss_dssp -SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHHHH
T ss_pred CCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHhhC
Confidence 59999999999999999999999999999999999999999999988889999999999999998
No 6
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.74 E-value=2.7e-18 Score=134.71 Aligned_cols=70 Identities=30% Similarity=0.421 Sum_probs=67.7
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRE 268 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~ 268 (388)
+.|||+|||++|++++|.+++.+||++. .+|+++||++|+.|++++|++|.++|++++++|.+++++|+.
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y 71 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKW 71 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 4689999999999999999999999999 999999999999999999999999999999999999999975
No 7
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.71 E-value=7.1e-18 Score=167.38 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
++...+.||||||||+|++.+|.+|.++||.++ .||+|+||.+||.|+++||.+|.++|+++|..|++++++|+++.+.
T Consensus 57 k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRPRR 136 (331)
T KOG0527|consen 57 KTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRPRR 136 (331)
T ss_pred CCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccccccc
Confidence 445578999999999999999999999999999 9999999999999999999999999999999999999999998887
Q ss_pred CcCCCC
Q 046368 273 GQVISD 278 (388)
Q Consensus 273 ~~~~s~ 278 (388)
+++...
T Consensus 137 Kkk~~~ 142 (331)
T KOG0527|consen 137 KKKKRP 142 (331)
T ss_pred cccccc
Confidence 765443
No 8
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.71 E-value=3.1e-17 Score=126.34 Aligned_cols=68 Identities=40% Similarity=0.758 Sum_probs=64.9
Q ss_pred CCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 200 PKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 200 PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
||||+|||+||+++++..++.+||++. .+|+++||++|++|++++|++|.++|++++++|.++|++|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999 99999999999999999999999999999999999999996
No 9
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.68 E-value=1.1e-16 Score=122.01 Aligned_cols=64 Identities=47% Similarity=0.756 Sum_probs=62.8
Q ss_pred CCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 046368 200 PKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEM 263 (388)
Q Consensus 200 PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em 263 (388)
||+|+|||++|++++|..++.+||+++ .+|+++||++|++|++++|++|.++|++++++|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999 9999999999999999999999999999999999987
No 10
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.68 E-value=1.2e-16 Score=125.65 Aligned_cols=71 Identities=39% Similarity=0.679 Sum_probs=62.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHhccc-CCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 197 PAHPKPNRSGYNFFFAEQHARLKPL-HPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 197 p~~PKrP~saY~lF~ke~r~~lk~~-~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
|++||+|+|||+||+++++..++.+ .+... .|+++.|+.+|++||++||.+|+++|+.++++|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999988 66666 99999999999999999999999999999999999999995
No 11
>smart00398 HMG high mobility group.
Probab=99.67 E-value=1.8e-16 Score=121.62 Aligned_cols=69 Identities=46% Similarity=0.734 Sum_probs=67.0
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
+||+|+|||++|++++|..++.+||++. .+|+++||++|+.|++++|++|.++|+.++++|..+|+.|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999 99999999999999999999999999999999999999984
No 12
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.66 E-value=3.7e-16 Score=152.39 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=106.4
Q ss_pred CCCCCceeeccCCcccCceeEEEEecccccccccccCCCCCC--------CCCCCcccccCCCCcccccccchhhhhhhh
Q 046368 117 SSGGSPVIGVIDGKFESGYLVTVTIGSETLKGVLYQAPQYPI--------HQVPSSYNVINNNNATAHAVSGVQRRRRRK 188 (388)
Q Consensus 117 s~~~~~v~g~idgkf~~gYlvtv~~gse~l~gvLy~~~~p~~--------~~~P~~~~i~~~~s~~~~~~~g~~~~r~kk 188 (388)
+.+|-+|+.+..|.|++.|+. ++|....++.-.|+....+ ++...+|.+... +. ..+..+. ++...
T Consensus 108 ~~l~wp~y~~pt~~~~~p~p~--~~~asmsrf~ph~~~p~~p~~~tagiPhpaiv~P~~kqe-s~--~~~~nvk-~~~~~ 181 (421)
T KOG3248|consen 108 HPLGWPVYPIPTFGFRHPYPG--VVNASMSRFSPHHVEPGHPGLHTAGIPHPAIVTPPVKQE-SD--SAPQNVK-RQAES 181 (421)
T ss_pred CccCCccccCCCCCCCCCCch--hhhhhhhhcchhccCCCCCCccccCCCCccccCCcccCc-cc--ccccccc-hhhhc
Confidence 367889999999999999997 4454444666555543221 111222222111 11 1222122 22222
Q ss_pred hccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 189 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 189 k~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
+++...|+ .+.|+|+||||||++|.|++|.+++.... .+|.++||++|.+|+.||.++|+|+|+++|+-|++.+++|.
T Consensus 182 k~e~e~Kk-phiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WS 260 (421)
T KOG3248|consen 182 KKEEEAKK-PHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 260 (421)
T ss_pred cccccccC-ccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 22222233 38899999999999999999999998777 99999999999999999999999999999999999999998
Q ss_pred HhhccCc
Q 046368 268 ERLKTGQ 274 (388)
Q Consensus 268 ~k~k~~~ 274 (388)
++....+
T Consensus 261 ARdNYgK 267 (421)
T KOG3248|consen 261 ARDNYGK 267 (421)
T ss_pred hhhhhhh
Confidence 7655553
No 13
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.65 E-value=2.9e-16 Score=145.16 Aligned_cols=87 Identities=30% Similarity=0.558 Sum_probs=81.1
Q ss_pred hccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 189 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 189 k~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
...++++|||.||||+||||+|+.++|.++..++|.+. .++++++|++|++|+++||++|...|..++++|..++..|.
T Consensus 60 ~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 60 RLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 34566899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HhhccCcC
Q 046368 268 ERLKTGQV 275 (388)
Q Consensus 268 ~k~k~~~~ 275 (388)
.+......
T Consensus 140 ~k~~~~~~ 147 (211)
T COG5648 140 KKLPNKAP 147 (211)
T ss_pred cccCCCCC
Confidence 87766553
No 14
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=123.83 Aligned_cols=75 Identities=40% Similarity=0.736 Sum_probs=71.1
Q ss_pred CC--CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 046368 196 DP--AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEME-DYRERL 270 (388)
Q Consensus 196 dp--~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~-~Yk~k~ 270 (388)
|| ..||+|++||++|+.++|..++.+||++. .+|++++|++|++|++++|++|+..|.+++++|..+|. .|+...
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66 49999999999999999999999999988 99999999999999999999999999999999999999 887643
No 15
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.59 E-value=5.4e-15 Score=112.10 Aligned_cols=64 Identities=50% Similarity=0.789 Sum_probs=62.3
Q ss_pred CCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 046368 200 PKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEM 263 (388)
Q Consensus 200 PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em 263 (388)
||+|+|||++|++++|..++.+||++. .+|+++||.+|+.|++++|.+|.++|+.++.+|.+++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999988 9999999999999999999999999999999999876
No 16
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.46 E-value=6e-14 Score=143.98 Aligned_cols=75 Identities=31% Similarity=0.621 Sum_probs=71.2
Q ss_pred hccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 189 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 189 k~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
|+.+++|||++|||+++|||||+...|..||.+ +.. .+++|.+|++|+.|+. |.+|+++|+.+|.||+.+|.+|+
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 445778999999999999999999999999998 777 9999999999999999 99999999999999999999998
No 17
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.35 E-value=2.3e-12 Score=125.18 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=78.1
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046368 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271 (388)
Q Consensus 193 ~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k 271 (388)
..+.|++|-+|+.+||.|++..|++|++.||++. +||.|+||.||..|+++||+.|...++.+|..|.+.|+.|+....
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp~ 137 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSPA 137 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCch
Confidence 3567889999999999999999999999999999 999999999999999999999999999999999999999987665
Q ss_pred cCcCCC
Q 046368 272 TGQVIS 277 (388)
Q Consensus 272 ~~~~~s 277 (388)
.-..++
T Consensus 138 y~ayin 143 (410)
T KOG4715|consen 138 YLAYIN 143 (410)
T ss_pred HHHHhh
Confidence 555444
No 18
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.21 E-value=4.9e-12 Score=128.92 Aligned_cols=80 Identities=18% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
..-+.+.||||||||.|.++.|.+|.+.+|+++ ..|+|+||.+|+.|+-.||++|+|.-.+.-..|.+.+++|+++.+.
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRP 399 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRP 399 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCC
Confidence 345578999999999999999999999999999 9999999999999999999999999888888999999999987655
Q ss_pred C
Q 046368 273 G 273 (388)
Q Consensus 273 ~ 273 (388)
+
T Consensus 400 K 400 (511)
T KOG0528|consen 400 K 400 (511)
T ss_pred C
Confidence 4
No 19
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.62 E-value=3e-08 Score=105.02 Aligned_cols=73 Identities=29% Similarity=0.516 Sum_probs=68.5
Q ss_pred ccccCCCCCCCCCCCChhHHHHHHHH--HHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 046368 190 SEIKRRDPAHPKPNRSGYNFFFAEQH--ARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIE 262 (388)
Q Consensus 190 ~~~~~kdp~~PKrP~saY~lF~ke~r--~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~e 262 (388)
+..-+++..+.++|||||++|++.+| ..+++.||+.+ +.|++|||++|..|-+.||+.|.++|.+.|+.|.+.
T Consensus 172 rspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 172 RSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred CCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 34556777899999999999999999 99999999999 999999999999999999999999999999999987
No 20
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=98.56 E-value=3.1e-08 Score=101.76 Aligned_cols=68 Identities=28% Similarity=0.509 Sum_probs=61.1
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhhhccCCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYFFRSQDS 75 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~~~~~~~ 75 (388)
+|.++.++||||+||..|..+||+..|+.++ ++++--|| .++++.||++|.+||+.|||.+..+.+.+
T Consensus 315 ~p~~gakPldl~rlYvsvke~gg~~~v~knk--rd~a~~lg-----ssaa~~l~k~y~~~lf~fec~f~Rg~e~p 382 (532)
T KOG2510|consen 315 LPAVGAKPLDLYRLYVSVKEIGGLTQVNKNK--RDLATNLG-----SSAASSLKKQYIQYLFAFECKFERGEEPP 382 (532)
T ss_pred cccccccchhHHHHHHHHHHhccceeeccch--hhhhhccc-----hHHHHHHHHHHHHHHHhhceeeeccCCCC
Confidence 4789999999999999999999999999999 99998888 68999999999999999999766555554
No 21
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.55 E-value=0.0002 Score=57.18 Aligned_cols=71 Identities=15% Similarity=0.347 Sum_probs=57.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
.|..|.+|--||-+.......+.+++-..-.-+.+...|++|++.+|.+|...|.++..+|+.+|.+|+..
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~ 73 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKALKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSA 73 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-C
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788889999999998888888887763336689999999999999999999999999999999999753
No 22
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.79 E-value=0.0019 Score=59.14 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCC
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLK 241 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~Ls 241 (388)
.|.|.+..|-+|||+.|+++.-.+||+.||++. +|..+..+..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 344556678899999999999999999999999 999999999998765
No 23
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.22 E-value=0.005 Score=57.90 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEME 264 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~ 264 (388)
.+++.+.-+|+-|-.+.|..+...+|+.. .++++++|..|++|++.-|.+|.+.+.+++..|...|+
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 46678888888888999999999999988 99999999999999999999999999999999988775
No 24
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=95.94 E-value=0.043 Score=50.46 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=42.2
Q ss_pred CChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046368 204 RSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKD 255 (388)
Q Consensus 204 ~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~d 255 (388)
.+||+=|+.++|.+ |.++. .|+....+.+|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRrk----h~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHHH----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 57899999999985 56788 99999999999999999999999876544
No 25
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.69 E-value=0.45 Score=35.85 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCH
Q 046368 204 RSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKE 242 (388)
Q Consensus 204 ~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~Lse 242 (388)
.+.|-+|++-.|+.|.+.||+.. ..|..+++.+|+..++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999 9999999999997654
No 26
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=88.33 E-value=0.89 Score=42.93 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=39.6
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046368 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALK 254 (388)
Q Consensus 193 ~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~ 254 (388)
.+.....+|||.|+||+|..-+-. ..|+.. .++|.+|+..|..=+- |..|.-+|..
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~~----~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak~ 93 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYSP----IFPPLPQKELSGILTKLWEKDPF--KNKWSLMAKA 93 (201)
T ss_pred ccccccccccchhHHHHHHHHHHh----hcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhhh
Confidence 344456789999999999776663 345556 9999999999987332 5555555543
No 27
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=84.53 E-value=0.71 Score=33.84 Aligned_cols=31 Identities=42% Similarity=0.587 Sum_probs=27.4
Q ss_pred ceeeccCCcc-cCceeEEEEeccccccccccc
Q 046368 122 PVIGVIDGKF-ESGYLVTVTIGSETLKGVLYQ 152 (388)
Q Consensus 122 ~v~g~idgkf-~~gYlvtv~~gse~l~gvLy~ 152 (388)
-|+++-||.- +..|-.+|++|.-+++|+||-
T Consensus 16 Rvs~idd~~~~e~aYQt~V~IgGHvFkGiLyD 47 (50)
T TIGR01624 16 RVTAIDDGEQAEYAYQATVTIGGHVFKGFLHD 47 (50)
T ss_pred EEeccCCCCCceEEEEEEEEECceEEeeEEec
Confidence 4677778877 889999999999999999995
No 28
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=81.82 E-value=0.92 Score=40.99 Aligned_cols=33 Identities=36% Similarity=0.598 Sum_probs=30.1
Q ss_pred CceeeccCCcccCceeEEEEecccccccccccC
Q 046368 121 SPVIGVIDGKFESGYLVTVTIGSETLKGVLYQA 153 (388)
Q Consensus 121 ~~v~g~idgkf~~gYlvtv~~gse~l~gvLy~~ 153 (388)
.-|+++=||.-+..|..+|.||.-+|+|+||--
T Consensus 117 VRVssiDdgedE~AYQTaV~IGGHVFKGiLYDq 149 (154)
T PF05142_consen 117 VRVSSIDDGEDEYAYQTAVNIGGHVFKGILYDQ 149 (154)
T ss_pred EEEecccCcccceeeEEeEEECCEEeeeeeecc
Confidence 348889999999999999999999999999964
No 29
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=79.52 E-value=1.9 Score=37.64 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=39.0
Q ss_pred CCC-CCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCH
Q 046368 198 AHP-KPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKE 242 (388)
Q Consensus 198 ~~P-KrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~Lse 242 (388)
.+| ||-..||.-|.-..-+.|+++||++- +.+-.+|-.+|..-++
T Consensus 70 rHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 70 RHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 344 44457999999999999999999999 9999999999987765
No 30
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=79.40 E-value=3.2 Score=29.55 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=28.4
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L 61 (388)
.|...|..+|.- .|..|+..|+ .+-.+..++.+|.+||
T Consensus 11 ~l~~~v~~~g~~-------~W~~Ia~~~~----~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 11 KLLEAVKKYGKD-------NWKKIAKRMP----GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHSTTT-------HHHHHHHHHS----SSSTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCc-------HHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence 456667766654 7999999999 2334568999999886
No 31
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=66.10 E-value=10 Score=35.53 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=37.0
Q ss_pred Cc-HHHHH-HHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 046368 225 KD-REISR-MIGELWNKLKESEKAVYQEKALK-DKERYRIEMEDYRE 268 (388)
Q Consensus 225 ~~-~EisK-~lge~Wk~LseeeK~~Y~e~A~~-dK~rY~~em~~Yk~ 268 (388)
.+ ..|++ .||..|+.+|+++|+.|.+.-.. ....|-..+..|..
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44 66665 78999999999999999988887 67889999988864
No 32
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=60.23 E-value=22 Score=33.59 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCc-HHHHH-HHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 046368 223 PGKD-REISR-MIGELWNKLKESEKAVYQEKALK-DKERYRIEMEDYRE 268 (388)
Q Consensus 223 P~~~-~EisK-~lge~Wk~LseeeK~~Y~e~A~~-dK~rY~~em~~Yk~ 268 (388)
|..+ ..|++ .||.-|+.+++++|+.|.+.-.. ....|...+..|..
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566 66665 68999999999999999987766 46778899999853
No 33
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=52.41 E-value=18 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L 61 (388)
.|...|...|. .|..|+..|+ .-....++..|.++|
T Consensus 8 ~L~~~~~~~g~--------~W~~Ia~~l~-----~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 8 LLLELVKKYGN--------DWKKIAEHLG-----NRTPKQCRNRWRNHL 43 (60)
T ss_dssp HHHHHHHHHTS---------HHHHHHHST-----TS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCc--------CHHHHHHHHC-----cCCHHHHHHHHHHHC
Confidence 35556665553 6999999996 122457788877755
No 34
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=50.92 E-value=24 Score=23.35 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=24.7
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHh
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~ 60 (388)
.|...|...|- ..|..|+..|+. -.+..++.+|..+
T Consensus 9 ~l~~~~~~~g~-------~~w~~Ia~~~~~-----rs~~~~~~~~~~~ 44 (45)
T cd00167 9 LLLEAVKKYGK-------NNWEKIAKELPG-----RTPKQCRERWRNL 44 (45)
T ss_pred HHHHHHHHHCc-------CCHHHHHhHcCC-----CCHHHHHHHHHHh
Confidence 45566666663 579999999965 2345778877665
No 35
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=43.68 E-value=41 Score=30.17 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCc-HHHH-HHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 046368 224 GKD-REIS-RMIGELWNKLKESEKAVYQEKALKD-KERYRIEMEDYRE 268 (388)
Q Consensus 224 ~~~-~Eis-K~lge~Wk~LseeeK~~Y~e~A~~d-K~rY~~em~~Yk~ 268 (388)
..+ ..|+ ..||.-|+.+++++|+.|.+...+. ...|...+..|..
T Consensus 37 ~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 37 YFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred hCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 344 4444 4578899999999999999877764 6778888888863
No 36
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=40.24 E-value=1.2e+02 Score=30.12 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=14.1
Q ss_pred CCCCChhHHHHHHHHHHhcccC
Q 046368 201 KPNRSGYNFFFAEQHARLKPLH 222 (388)
Q Consensus 201 KrP~saY~lF~ke~r~~lk~~~ 222 (388)
|||++|| ..|+-++||.++
T Consensus 247 KRPRTAF---taeQL~RLK~EF 265 (342)
T KOG0493|consen 247 KRPRTAF---TAEQLQRLKAEF 265 (342)
T ss_pred cCccccc---cHHHHHHHHHHH
Confidence 8999985 567777777654
No 37
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=39.00 E-value=36 Score=27.12 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=45.6
Q ss_pred cchhhHHHHhccch--hhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhhhcc
Q 046368 11 LHRLFVEVTARGGI--EKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYFFRS 72 (388)
Q Consensus 11 L~~Ly~~V~~~GG~--~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~~~~ 72 (388)
|..|+......|.+ ...-....|..|+..|.-.....-....|+.+|..+=-.|..+..+..
T Consensus 10 ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~ 73 (96)
T PF12776_consen 10 LLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRN 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566666677777 355557789999999986554444456899999999999988775554
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=37.83 E-value=41 Score=26.04 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=36.7
Q ss_pred cccchhhHHHHhc---cchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 9 LDLHRLFVEVTAR---GGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 9 LDL~~Ly~~V~~~---GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
|+|...|..|..- ++.........|.+|+..|+--..+.-.+..|++.|..+...
T Consensus 14 v~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 14 VELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred HHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4555556665533 344455568889999999974322355667899999887653
No 39
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=36.13 E-value=66 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPST 45 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~ 45 (388)
.|.-+|+..+.|.||.+|.++-.-+ -+.|.+++..||+.+.
T Consensus 45 pPkS~Gk~Fs~~~Lf~LI~k~~~ke----ikTW~~La~~LGVepp 85 (175)
T PF09441_consen 45 PPKSDGKSFSTFTLFELIRKLESKE----IKTWAQLALELGVEPP 85 (175)
T ss_pred CCCcCCccchHHHHHHHHHHHhhhh----HhHHHHHHHHhCCCCC
Confidence 4788999999999999999865543 3579999999998644
No 40
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.63 E-value=67 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=18.8
Q ss_pred cchhhhhhhhCCCCCCCcHHHHHHHHHHHhH
Q 046368 31 RRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61 (388)
Q Consensus 31 ~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L 61 (388)
..|..|+..|+ +-.+..++..|..++
T Consensus 22 ~~w~~Ia~~~~-----~rt~~~~~~~~~~~~ 47 (49)
T smart00717 22 NNWEKIAKELP-----GRTAEQCRERWNNLL 47 (49)
T ss_pred CCHHHHHHHcC-----CCCHHHHHHHHHHHc
Confidence 57999999987 223457788777665
No 41
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=33.16 E-value=1.5e+02 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 046368 227 REISRMIGELWNKLKESEKAVYQEKALK-------DKERYRIEMEDYR 267 (388)
Q Consensus 227 ~EisK~lge~Wk~LseeeK~~Y~e~A~~-------dK~rY~~em~~Yk 267 (388)
.++-.-+...|+.|++..|..+.+.|.. ++.+....|..|.
T Consensus 10 q~~L~pl~~~W~~l~~~qr~k~l~~a~r~~~mspeqq~r~~~rm~~W~ 57 (107)
T PF11304_consen 10 QQALAPLAERWNSLPPEQRRKWLQIAERWPSMSPEQQQRLRERMRRWA 57 (107)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3444555556666666666555555432 4555555555554
No 42
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=32.99 E-value=1e+02 Score=36.05 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=15.3
Q ss_pred cccCCCCCcchhhhhhccccCCcccchhhh
Q 046368 353 ISAEEPAFELPKAEENAKDKNVENVSDDIV 382 (388)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (388)
.-+|++.+.+.|-...--.+.+..|.++++
T Consensus 944 e~~De~~~~l~~~i~~~~~~~~~~v~~~~~ 973 (1128)
T KOG2051|consen 944 ENDDEDEERLDRMIDEGFEELTPDVDQDDE 973 (1128)
T ss_pred cCchhHHHHHHhhhcchhhhcCCChhhHHH
Confidence 335666677766554433344444444443
No 43
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=32.83 E-value=97 Score=31.34 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 046368 205 SGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYR-IEMEDYRERLK 271 (388)
Q Consensus 205 saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~-~em~~Yk~k~k 271 (388)
.|+-.|.--.-..|....|.+. .|-..+.=+.|...|.-+|..|+|+|++-.+-=. +||+.-+-++.
T Consensus 230 EAlSCFLIpvLrsLar~kPtMtlEeGl~ra~qEW~~~SnfdRmifyemaekFmEFEaeEEmq~q~lq~~ 298 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTMTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFMEFEAEEEMQIQKLQLM 298 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCccHHHHHHHHHHHhhccccccHHHHHHHHHHHccCCcHHHHHHHHHHHh
Confidence 3444444444444445557777 6666666678999999999999999999765322 56666654443
No 44
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=32.32 E-value=1.4e+02 Score=25.70 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046368 230 SRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271 (388)
Q Consensus 230 sK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k 271 (388)
.+.|-..|+.|+++++.......+..++.|.+-+.+|-.+..
T Consensus 89 ~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (135)
T PRK09706 89 QKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARK 130 (135)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778999999999999999999999999999999976543
No 45
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.16 E-value=59 Score=30.86 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 046368 227 REISRMIGELWNKLKESEKAVYQEKALK-DKERYRIEMEDYRER 269 (388)
Q Consensus 227 ~EisK~lge~Wk~LseeeK~~Y~e~A~~-dK~rY~~em~~Yk~k 269 (388)
.--...||.-|+.+|+++++.|...-.. ....|-..+..|+.+
T Consensus 74 ~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q 117 (202)
T COG2854 74 YAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQ 117 (202)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5566779999999999999999977766 467889999999753
No 46
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=25.13 E-value=1.5e+02 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046368 228 EISRMIGELWNKLKESEKAVYQEKALKDK 256 (388)
Q Consensus 228 EisK~lge~Wk~LseeeK~~Y~e~A~~dK 256 (388)
+..++.-+++..|++++|+.|.+..++-.
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~ 146 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERI 146 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44556677889999999999987755443
No 47
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=23.21 E-value=1.9e+02 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 046368 229 ISRMIGELWNKLKESEKAVYQEKALKDKERYRIEM 263 (388)
Q Consensus 229 isK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em 263 (388)
+.++..+++..|++++|+.|.++-++-.+.+...+
T Consensus 126 ~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 126 MLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678999999999999998877766666665
No 48
>PRK10236 hypothetical protein; Provisional
Probab=22.18 E-value=93 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046368 227 REISRMIGELWNKLKESEKAVYQEKAL 253 (388)
Q Consensus 227 ~EisK~lge~Wk~LseeeK~~Y~e~A~ 253 (388)
.=+.|++.+.|+.|+++|++.+.+.-.
T Consensus 116 ~il~kll~~a~~kms~eE~~~L~~~l~ 142 (237)
T PRK10236 116 QLLEQFLRNTWKKMDEEHKQEFLHAVD 142 (237)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 347899999999999999987765433
No 49
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=44 Score=31.52 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=42.0
Q ss_pred CCC-CCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046368 198 AHP-KPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKA 252 (388)
Q Consensus 198 ~~P-KrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A 252 (388)
.+| ||=+.||.-|-...-+.|+.+||++. ..+-.+|-.+|..-++. ||.+++
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 444 45567899999999999999999999 99999999999887764 454443
No 50
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=49 Score=34.16 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 247 VYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 247 ~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
.|+++|+.+-..-..++.+|-.+.
T Consensus 321 EYeeQaeveT~kaLaeLReycnkp 344 (452)
T KOG3817|consen 321 EYEEQAEVETSKALAELREYCNKP 344 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 389999988887888888886543
No 51
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=21.41 E-value=2e+02 Score=26.53 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 046368 227 REISRMIGELWNKLKESEKAVYQEKALKDKERY 259 (388)
Q Consensus 227 ~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY 259 (388)
.++.++-.++.+-|++|+|+.|.+..++-...+
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~ 143 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 143 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 356677778999999999999977655544333
No 52
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=20.37 E-value=34 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.424 Sum_probs=0.4
Q ss_pred ccccccCCCCcC
Q 046368 331 DTEMEESPGVGL 342 (388)
Q Consensus 331 ~~~~~~~~~~~~ 342 (388)
+.+.+..|.|.-
T Consensus 35 dee~de~p~p~f 46 (101)
T PF09026_consen 35 DEEEDEVPVPEF 46 (101)
T ss_dssp -----------H
T ss_pred ccccccccchhH
Confidence 444456666543
No 53
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=20.35 E-value=63 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=23.7
Q ss_pred hhhccchhhhhhhhC--CCC-CCCcHHHHHHHHHHHhHHHHH
Q 046368 27 IIKERRWKEVTAIFN--FPS-TATNASFVLRKYYQSLLRDYE 65 (388)
Q Consensus 27 V~~~~~W~eV~~~l~--~p~-~~tsas~~Lk~~Y~k~L~~yE 65 (388)
-.....|.+|+..|+ ++. .|...-..||..|.+.+....
T Consensus 23 ~~r~~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 23 QLREEAWQEIARELGKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788999999998 441 122333355555655555554
No 54
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=20.34 E-value=88 Score=24.22 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=29.8
Q ss_pred hhhHHHHhccch-hhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHh
Q 046368 13 RLFVEVTARGGI-EKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQ 66 (388)
Q Consensus 13 ~Ly~~V~~~GG~-~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~ 66 (388)
.|+.-|...... ..|+.++.|++++..- ++ .-.-+.+|..|.|.|.+...
T Consensus 12 ~l~~~v~~~~~~~~~~~Gn~iwk~le~~~--~t--~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 12 ALLDYVKENERQGGSVSGNKIWKELEEKH--PT--RHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp HHHHHHHHT--STTTTTSSHHHHHHHHS---SS--S--SHHHHHHHHHHT-----
T ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhcccc
Confidence 466677543322 5688999999998775 22 23456899999999987654
No 55
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=1.4e+02 Score=27.85 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCc
Q 046368 253 LKDKERYRIEMEDYRERLKTGQ 274 (388)
Q Consensus 253 ~~dK~rY~~em~~Yk~k~k~~~ 274 (388)
..+++.|++...+|-++-....
T Consensus 129 l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 129 LRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred hcCHHHHHHHHHHHHHHhcChh
Confidence 4467788888888877654443
No 56
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=20.09 E-value=90 Score=23.49 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=27.8
Q ss_pred ccchhhHH-HHhccchhhhhhccch---hhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 10 DLHRLFVE-VTARGGIEKIIKERRW---KEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 10 DL~~Ly~~-V~~~GG~~~V~~~~~W---~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
+++.+|.. |..+|+ ..| +.|+..|+.+.- ....++.|+++|...
T Consensus 9 eeh~~Fl~ai~~~G~-------g~~a~pk~I~~~~~~~~l---T~~qV~SH~QKy~~k 56 (57)
T TIGR01557 9 DLHDRFLQAVQKLGG-------PDWATPKRILELMVVDGL---TRDQVASHLQKYRLK 56 (57)
T ss_pred HHHHHHHHHHHHhCC-------CcccchHHHHHHcCCCCC---CHHHHHHHHHHHHcc
Confidence 56777766 344443 248 889888886541 235677777777543
No 57
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=20.04 E-value=1.4e+02 Score=21.76 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=25.7
Q ss_pred HHHHHHhcccCCCCc---H----HHHHHHHHHHhcCCHHHH-HHH
Q 046368 212 AEQHARLKPLHPGKD---R----EISRMIGELWNKLKESEK-AVY 248 (388)
Q Consensus 212 ke~r~~lk~~~P~~~---~----EisK~lge~Wk~LseeeK-~~Y 248 (388)
+.++..++.-||+.. . +....|.+.|..|++.++ +.|
T Consensus 19 ~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y 63 (64)
T PF00226_consen 19 KAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY 63 (64)
T ss_dssp HHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence 345556666778773 4 788899999999976554 444
No 58
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=20.02 E-value=1.3e+02 Score=31.52 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHhcccCCCCc--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 046368 214 QHARLKPLHPGKD--REISRMIGELWNKLKESEKAVYQEK 251 (388)
Q Consensus 214 ~r~~lk~~~P~~~--~EisK~lge~Wk~LseeeK~~Y~e~ 251 (388)
+|...++-||+.. .+..+.|.+.|..|++.+|..-+++
T Consensus 49 Yrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 49 YRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 4555566677765 6788899999999998876655554
Done!