Query 046368
Match_columns 388
No_of_seqs 356 out of 1497
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 20:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 8.6E-22 2.9E-26 163.6 10.1 84 191-274 9-93 (102)
2 2eqz_A High mobility group pro 99.9 1.1E-21 3.9E-26 157.7 9.4 77 191-267 7-86 (86)
3 1ig6_A MRF-2, modulator recogn 99.9 2.2E-22 7.5E-27 168.7 5.0 79 1-80 25-103 (107)
4 1cg7_A Protein (NON histone pr 99.8 5.5E-22 1.9E-26 162.0 4.8 82 189-270 10-92 (93)
5 2crj_A SWI/SNF-related matrix- 99.8 4.1E-21 1.4E-25 156.5 9.3 81 194-274 2-83 (92)
6 1hme_A High mobility group pro 99.8 1.5E-21 5.2E-26 153.4 6.3 75 194-268 1-76 (77)
7 1k99_A Upstream binding factor 99.8 2.8E-21 9.6E-26 159.8 7.7 79 192-270 3-82 (99)
8 2rq5_A Protein jumonji; develo 99.8 1.9E-21 6.3E-26 166.7 6.2 67 1-67 34-100 (121)
9 2cxy_A BAF250B subunit, HBAF25 99.8 3.2E-21 1.1E-25 166.1 7.2 75 1-76 43-117 (125)
10 2lhj_A High mobility group pro 99.8 7.9E-22 2.7E-26 162.2 2.0 83 187-269 10-95 (97)
11 2e6o_A HMG box-containing prot 99.8 3.1E-21 1.1E-25 155.6 5.4 76 192-267 10-86 (87)
12 2cs1_A PMS1 protein homolog 1; 99.8 1.2E-20 4.2E-25 153.6 8.8 77 194-270 2-79 (92)
13 1hry_A Human SRY; DNA, DNA-bin 99.8 3.6E-21 1.2E-25 150.9 5.1 74 196-269 1-75 (76)
14 1wgf_A Upstream binding factor 99.8 2.1E-21 7.2E-26 157.6 3.2 76 189-264 10-86 (90)
15 1aab_A High mobility group pro 99.8 7.6E-21 2.6E-25 151.7 6.0 75 194-268 2-79 (83)
16 1c20_A DEAD ringer protein; DN 99.8 1.7E-20 5.8E-25 162.1 6.9 69 1-69 44-112 (128)
17 3nm9_A HMG-D, high mobility gr 99.8 4.3E-20 1.5E-24 144.0 8.6 70 198-269 2-72 (73)
18 1j46_A SRY, sex-determining re 99.8 2E-20 6.8E-25 150.1 6.5 79 196-274 1-80 (85)
19 2jrz_A Histone demethylase jar 99.8 3E-20 1E-24 158.2 6.7 67 1-68 32-98 (117)
20 1wz6_A HMG-box transcription f 99.8 1.1E-20 3.8E-25 150.4 3.6 77 195-271 3-80 (82)
21 2jxj_A Histone demethylase jar 99.8 2.3E-20 7.9E-25 153.4 5.3 67 1-68 28-94 (96)
22 4euw_A Transcription factor SO 99.8 2.7E-20 9.3E-25 155.7 5.8 82 193-274 23-105 (106)
23 2eqy_A RBP2 like, jumonji, at 99.8 4E-20 1.4E-24 158.7 6.6 66 1-67 34-99 (122)
24 1gt0_D Transcription factor SO 99.8 5.1E-20 1.7E-24 145.8 6.6 77 198-274 1-78 (80)
25 2kk0_A AT-rich interactive dom 99.8 4E-20 1.4E-24 163.1 6.4 68 1-68 56-123 (145)
26 2lm1_A Lysine-specific demethy 99.8 4.3E-20 1.5E-24 154.7 6.0 67 1-68 36-102 (107)
27 3f27_D Transcription factor SO 99.8 4.5E-20 1.5E-24 146.9 5.5 78 196-273 3-81 (83)
28 4a3n_A Transcription factor SO 99.8 8.2E-20 2.8E-24 140.9 6.4 69 199-267 2-71 (71)
29 1wxl_A Single-strand recogniti 99.8 5.6E-20 1.9E-24 143.4 5.3 70 197-268 1-71 (73)
30 1i11_A Transcription factor SO 99.8 5.1E-20 1.8E-24 146.2 5.0 76 197-272 2-78 (81)
31 3u2b_C Transcription factor SO 99.8 8.1E-20 2.8E-24 144.0 6.0 75 198-272 1-76 (79)
32 1ckt_A High mobility group 1 p 99.8 1.3E-19 4.6E-24 140.0 6.4 68 199-266 1-71 (71)
33 2lef_A LEF-1 HMG, protein (lym 99.8 1.7E-19 5.7E-24 144.9 6.5 75 199-273 2-77 (86)
34 1v64_A Nucleolar transcription 99.8 7.6E-19 2.6E-23 147.5 10.5 76 192-271 9-86 (108)
35 2gzk_A Sex-determining region 99.8 5.4E-19 1.8E-23 156.8 9.8 77 192-268 81-158 (159)
36 3fgh_A Transcription factor A, 99.8 7.8E-19 2.7E-23 134.6 8.4 66 198-266 1-66 (67)
37 2li6_A SWI/SNF chromatin-remod 99.8 2.2E-19 7.6E-24 152.7 5.7 68 1-74 41-108 (116)
38 1kkx_A Transcription regulator 99.8 5.1E-19 1.7E-23 152.0 6.8 62 1-67 40-101 (123)
39 2yrq_A High mobility group pro 99.8 1.7E-18 5.6E-23 155.9 9.2 78 192-269 94-172 (173)
40 1l8y_A Upstream binding factor 99.7 1.4E-18 4.8E-23 141.7 7.6 74 198-272 3-77 (91)
41 2yrq_A High mobility group pro 99.7 5.6E-18 1.9E-22 152.5 9.2 80 190-269 6-88 (173)
42 1v63_A Nucleolar transcription 99.7 1.4E-17 4.7E-22 138.2 10.4 75 196-272 5-80 (101)
43 3tq6_A Transcription factor A, 99.7 8.9E-18 3E-22 156.7 5.8 76 192-270 107-182 (214)
44 3tmm_A Transcription factor A, 99.7 1.4E-17 4.7E-22 157.7 4.8 76 192-270 139-214 (238)
45 3tmm_A Transcription factor A, 99.7 7.6E-17 2.6E-21 152.6 7.4 77 193-269 35-112 (238)
46 2d7l_A WD repeat and HMG-box D 99.7 6.1E-17 2.1E-21 129.3 5.3 60 196-255 2-63 (81)
47 2cto_A Novel protein; high mob 99.7 6.2E-17 2.1E-21 132.6 5.0 68 194-263 5-76 (93)
48 3tq6_A Transcription factor A, 99.6 3E-16 1E-20 146.4 8.4 75 196-270 6-81 (214)
49 2yuk_A Myeloid/lymphoid or mix 99.6 2.8E-17 9.6E-22 133.8 1.0 67 192-262 15-84 (90)
50 2gzk_A Sex-determining region 99.6 1.8E-15 6E-20 134.1 6.9 73 197-269 2-75 (159)
51 1gvd_A MYB proto-oncogene prot 75.5 2.2 7.7E-05 29.8 3.2 39 13-63 13-51 (52)
52 1ity_A TRF1; helix-turn-helix, 74.9 3.3 0.00011 30.8 4.2 41 13-63 20-60 (69)
53 1guu_A C-MYB, MYB proto-oncoge 73.4 3.5 0.00012 28.7 3.8 39 13-63 13-51 (52)
54 2dim_A Cell division cycle 5-l 70.4 2.8 9.5E-05 31.3 2.8 39 13-63 19-57 (70)
55 2d9a_A B-MYB, MYB-related prot 68.8 3.9 0.00013 29.4 3.3 39 13-63 18-56 (60)
56 1x41_A Transcriptional adaptor 67.7 5.4 0.00018 28.8 3.8 38 13-62 18-55 (60)
57 1w0t_A Telomeric repeat bindin 61.6 9.9 0.00034 26.6 4.1 39 13-61 12-50 (53)
58 2yum_A ZZZ3 protein, zinc fing 59.0 8.9 0.00031 28.8 3.7 46 13-65 18-63 (75)
59 2cu7_A KIAA1915 protein; nucle 54.5 18 0.0006 27.0 4.7 41 13-66 19-59 (72)
60 2din_A Cell division cycle 5-l 51.4 17 0.00059 26.4 4.2 40 13-66 19-58 (66)
61 3sjm_A Telomeric repeat-bindin 50.6 22 0.00075 26.1 4.6 40 13-62 21-60 (64)
62 2elk_A SPCC24B10.08C protein; 49.6 19 0.00066 25.7 4.1 39 13-62 19-57 (58)
63 2k9n_A MYB24; R2R3 domain, DNA 44.4 15 0.0005 29.5 3.0 39 13-63 11-49 (107)
64 1gv2_A C-MYB, MYB proto-oncoge 40.6 19 0.00067 28.4 3.2 38 13-62 14-51 (105)
65 2yus_A SWI/SNF-related matrix- 39.1 17 0.00059 27.9 2.5 35 13-60 28-62 (79)
66 2qgu_A Probable signal peptide 33.9 25 0.00084 31.8 3.1 45 223-267 70-117 (211)
67 2cqr_A RSGI RUH-043, DNAJ homo 30.4 52 0.0018 24.9 3.9 40 14-62 29-68 (73)
68 1h8a_C AMV V-MYB, MYB transfor 30.1 40 0.0014 27.7 3.5 39 13-63 37-75 (128)
69 2o37_A Protein SIS1; HSP40, J- 29.5 61 0.0021 25.0 4.3 36 212-247 27-65 (92)
70 1gv2_A C-MYB, MYB proto-oncoge 29.1 49 0.0017 26.0 3.8 37 13-62 66-102 (105)
71 1fex_A TRF2-interacting telome 27.9 51 0.0018 23.8 3.3 45 13-61 12-57 (59)
72 3zqc_A MYB3; transcription-DNA 26.8 53 0.0018 27.1 3.7 39 13-64 64-102 (131)
73 2k9n_A MYB24; R2R3 domain, DNA 25.8 82 0.0028 24.9 4.6 40 13-65 63-102 (107)
74 2och_A Hypothetical protein DN 24.7 86 0.0029 22.8 4.2 35 212-246 27-64 (73)
75 3zqc_A MYB3; transcription-DNA 23.5 56 0.0019 26.9 3.3 39 13-63 12-50 (131)
76 2cqq_A RSGI RUH-037, DNAJ homo 23.4 64 0.0022 24.3 3.2 41 13-63 18-58 (72)
77 1hdj_A Human HSP40, HDJ-1; mol 22.3 1.4E+02 0.0047 21.8 5.0 34 213-246 23-61 (77)
78 3osg_A MYB21; transcription-DN 22.2 69 0.0023 26.2 3.5 38 13-63 21-58 (126)
79 3ukx_C Bimax2 peptide; arm rep 22.0 36 0.0012 20.8 1.2 9 195-203 16-24 (28)
80 2ltp_A Nuclear receptor corepr 27.2 19 0.00067 28.1 0.0 38 14-64 27-64 (89)
81 2yua_A Williams-beuren syndrom 21.6 1.2E+02 0.0042 23.5 4.8 34 213-246 37-76 (99)
82 2ctp_A DNAJ homolog subfamily 20.7 1.4E+02 0.0046 22.0 4.7 34 212-245 26-64 (78)
83 3osg_A MYB21; transcription-DN 20.4 1.1E+02 0.0036 25.0 4.3 38 13-63 72-109 (126)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=8.6e-22 Score=163.55 Aligned_cols=84 Identities=30% Similarity=0.623 Sum_probs=79.4
Q ss_pred cccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 191 EIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 191 ~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
+++++||++||||+||||||++++|..|+.+||++. .+|+++||++|++|++++|++|+++|++++++|..+|++|++.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 88 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRAS 88 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355689999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred hccCc
Q 046368 270 LKTGQ 274 (388)
Q Consensus 270 ~k~~~ 274 (388)
.....
T Consensus 89 ~~~~~ 93 (102)
T 2co9_A 89 LVSKS 93 (102)
T ss_dssp HTSSC
T ss_pred ccccc
Confidence 76654
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=157.72 Aligned_cols=77 Identities=34% Similarity=0.550 Sum_probs=73.6
Q ss_pred cccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 191 EIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 191 ~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
++.++||++||||+||||||++++|.+++.+||++. .||+++||++|++|++++|++|+++|++++++|.++|++|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999986 99999999999999999999999999999999999999994
No 3
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.85 E-value=2.2e-22 Score=168.75 Aligned_cols=79 Identities=28% Similarity=0.478 Sum_probs=72.2
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhhhccCCCCCCCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYFFRSQDSWQGPS 80 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~~~~~~~~~~p~ 80 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++.+++++++.||++|++||++||+ |+.+.++.+.+|.
T Consensus 25 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~-~~~~~~~~~~p~~ 103 (107)
T 1ig6_A 25 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER-FIKGEEDKPLPPI 103 (107)
T ss_dssp CCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHH-HHHHHTSSSSCTT
T ss_pred CceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999 5556666655443
No 4
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.84 E-value=5.5e-22 Score=162.00 Aligned_cols=82 Identities=34% Similarity=0.595 Sum_probs=77.6
Q ss_pred hccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 189 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 189 k~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
+++++++||++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|..+|++|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466789999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred Hhh
Q 046368 268 ERL 270 (388)
Q Consensus 268 ~k~ 270 (388)
.+.
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 764
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=4.1e-21 Score=156.47 Aligned_cols=81 Identities=30% Similarity=0.535 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
.+||++||||+||||||++++|.+|+.+||++. .+|+++||++|++|++++|++|+++|++++++|.++|++|+.....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 81 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 579999999999999999999999999999999 9999999999999999999999999999999999999999876544
Q ss_pred Cc
Q 046368 273 GQ 274 (388)
Q Consensus 273 ~~ 274 (388)
..
T Consensus 82 ~~ 83 (92)
T 2crj_A 82 KV 83 (92)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.84 E-value=1.5e-21 Score=153.39 Aligned_cols=75 Identities=33% Similarity=0.668 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRE 268 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~ 268 (388)
++||++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|.++|++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999 999999999999999999999999999999999999999964
No 7
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.84 E-value=2.8e-21 Score=159.79 Aligned_cols=79 Identities=23% Similarity=0.492 Sum_probs=75.6
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
++++||++||||+|||||||+++|.+|+.+||+++ .+|+++||++|++|++++|++|+++|++++++|..+|.+|+...
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 82 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDH 82 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999999 99999999999999999999999999999999999999998753
No 8
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.83 E-value=1.9e-21 Score=166.68 Aligned_cols=67 Identities=28% Similarity=0.645 Sum_probs=65.5
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhH
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQI 67 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~ 67 (388)
+|+|+|++||||+||++|+++|||++||.+++|++|+..||+|++++++++.||++|++||++||++
T Consensus 34 ~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~ 100 (121)
T 2rq5_A 34 LPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSL 100 (121)
T ss_dssp CCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHC
T ss_pred CCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999984
No 9
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.83 E-value=3.2e-21 Score=166.09 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=70.6
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhhhccCCCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYFFRSQDSW 76 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~~~~~~~~ 76 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++. ++++++.||++|++||++||++++.+...++
T Consensus 43 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~ 117 (125)
T 2cxy_A 43 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQYIQYLFAFECKIERGEEPPP 117 (125)
T ss_dssp CCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC
T ss_pred CeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 69999999999999999999999999999999999999999997 5899999999999999999999888886554
No 10
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.83 E-value=7.9e-22 Score=162.18 Aligned_cols=83 Identities=31% Similarity=0.586 Sum_probs=77.9
Q ss_pred hhhccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 046368 187 RKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEM 263 (388)
Q Consensus 187 kkk~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em 263 (388)
+++++++++||++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|.++|
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 89 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK 89 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677899999999999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 046368 264 EDYRER 269 (388)
Q Consensus 264 ~~Yk~k 269 (388)
++|+.+
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-21 Score=155.61 Aligned_cols=76 Identities=25% Similarity=0.424 Sum_probs=73.3
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
+.++||++||||+||||||++++|.+|+.+||++. .+|+++||++|++|++++|++|+++|++++++|.+++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 45689999999999999999999999999999999 99999999999999999999999999999999999999985
No 12
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=153.59 Aligned_cols=77 Identities=30% Similarity=0.418 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
..+|++||||+||||||++++|.+|+.+||+++ .+|+++||++|++|++++|++|+++|+++|++|.++|++|+.+.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999 99999999999999999999999999999999999999998764
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.82 E-value=3.6e-21 Score=150.88 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=70.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
||++||||+||||||++++|.+++.+||+++ .+|+++||++|++|++++|++|.++|++++++|.++|++|+.+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 6899999999999999999999999999999 9999999999999999999999999999999999999999753
No 14
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=2.1e-21 Score=157.63 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=71.4
Q ss_pred hccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 189 KSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEME 264 (388)
Q Consensus 189 k~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~ 264 (388)
+++++++||++||||+||||||++++|.+|+.+||++. .+|+++||++|++|++++|++|+++|++++++|.++|.
T Consensus 10 k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466789999999999999999999999999999999 99999999999999999999999999999999988774
No 15
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.82 E-value=7.6e-21 Score=151.71 Aligned_cols=75 Identities=32% Similarity=0.588 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRE 268 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~ 268 (388)
++||++||||+||||||++++|.+++.+||+++ .+|+++||++|++|++++|++|+++|++++++|.++|++|+.
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999985 899999999999999999999999999999999999999964
No 16
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.81 E-value=1.7e-20 Score=162.09 Aligned_cols=69 Identities=36% Similarity=0.611 Sum_probs=66.8
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYF 69 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~ 69 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++.+++++++.||++|++||++||+++.
T Consensus 44 ~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 44 LPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp CCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred ceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999764
No 17
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.81 E-value=4.3e-20 Score=143.99 Aligned_cols=70 Identities=27% Similarity=0.571 Sum_probs=68.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
++||||+|||||||+++|.+|+.+||+++ .+|+++||++|++|++ |++|+++|++++++|.++|++|+++
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999 9999999999999998 9999999999999999999999875
No 18
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.81 E-value=2e-20 Score=150.14 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=74.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTGQ 274 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~~~ 274 (388)
.|++||||+||||||++++|..|+.+||+++ .+|+++||++|++|++++|++|.++|++++++|..+|++|+.+.+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~ 80 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCcc
Confidence 3789999999999999999999999999999 999999999999999999999999999999999999999988765544
No 19
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.80 E-value=3e-20 Score=158.25 Aligned_cols=67 Identities=36% Similarity=0.582 Sum_probs=64.6
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIY 68 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~ 68 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++.+ +++++.||++|++||++||+++
T Consensus 32 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk~~Y~k~L~~yE~~~ 98 (117)
T 2jrz_A 32 IPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRSHYERIVYPYEMYQ 98 (117)
T ss_dssp CCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHHHHHHHTTHHHHHHH
T ss_pred CCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999987 8999999999999999999954
No 20
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.80 E-value=1.1e-20 Score=150.38 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046368 195 RDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271 (388)
Q Consensus 195 kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k 271 (388)
.++++||||+||||||++++|..++.+||++. .+|+++||++|++|++++|++|+++|++++++|.++|++|+.+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~ 80 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPS 80 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCC
Confidence 57899999999999999999999999999999 999999999999999999999999999999999999999976543
No 21
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-20 Score=153.40 Aligned_cols=67 Identities=30% Similarity=0.550 Sum_probs=63.8
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIY 68 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~ 68 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++.++ ++++.||++|++||++||+++
T Consensus 28 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 28 IPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSHYERILYPYELFQ 94 (96)
T ss_dssp CCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999876 788999999999999999863
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=155.68 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=70.3
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046368 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLK 271 (388)
Q Consensus 193 ~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k 271 (388)
..+++++||||+||||||++++|.+++.+||++. .+|+++||++|++|++++|++|+++|++++++|.++|++|+.+.+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 3578899999999999999999999999999999 999999999999999999999999999999999999999988765
Q ss_pred cCc
Q 046368 272 TGQ 274 (388)
Q Consensus 272 ~~~ 274 (388)
.++
T Consensus 103 rkK 105 (106)
T 4euw_A 103 RRK 105 (106)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 23
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4e-20 Score=158.65 Aligned_cols=66 Identities=27% Similarity=0.533 Sum_probs=63.3
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhH
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQI 67 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~ 67 (388)
+|+|+|++||||+||++|+++|||++||.+++|++|+..||+++ ++++++.||++|++||++||++
T Consensus 34 ~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~-~~~~~~~Lr~~Y~k~L~~yE~~ 99 (122)
T 2eqy_A 34 IPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAP-GKAVGSHIRGHYERILNPYNLF 99 (122)
T ss_dssp CCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCS-SSHHHHHHHHHHHHTHHHHHHH
T ss_pred CCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCC-CCcHHHHHHHHHHHHhHHHHHH
Confidence 69999999999999999999999999999999999999999998 4688999999999999999994
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.80 E-value=5.1e-20 Score=145.80 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTGQ 274 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~~~ 274 (388)
++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|..+|++|+.+.+...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~ 78 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 78 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCC
Confidence 47999999999999999999999999999 999999999999999999999999999999999999999987665443
No 25
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=163.05 Aligned_cols=68 Identities=40% Similarity=0.704 Sum_probs=66.1
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIY 68 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~ 68 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||++.+++++++.||++|++||++||++.
T Consensus 56 ~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~ 123 (145)
T 2kk0_A 56 IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 123 (145)
T ss_dssp CCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHH
T ss_pred ceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999963
No 26
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.3e-20 Score=154.67 Aligned_cols=67 Identities=31% Similarity=0.616 Sum_probs=64.2
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHh
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIY 68 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~ 68 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+|.+ +++++.||++|++||++||+++
T Consensus 36 ~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 36 IPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLKAHYERILHPFEVYT 102 (107)
T ss_dssp CCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHHHHHHHhHHHHHHH
Confidence 699999999999999999999999999999999999999999984 8999999999999999999964
No 27
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.79 E-value=4.5e-20 Score=146.93 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=70.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTG 273 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~~ 273 (388)
.+++||||+||||||++++|..|+.+||+++ .+|+++||++|++|++++|++|.++|++++++|.++|++|+.+.+.+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~k 81 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRR 81 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccC
Confidence 3578999999999999999999999999999 99999999999999999999999999999999999999998766543
No 28
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.79 E-value=8.2e-20 Score=140.90 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=62.6
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYR 267 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk 267 (388)
+||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|.++|++|+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 6899999999999999999999999999 99999999999999999999999999999999999999995
No 29
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.6e-20 Score=143.36 Aligned_cols=70 Identities=30% Similarity=0.643 Sum_probs=68.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRE 268 (388)
Q Consensus 197 p~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~ 268 (388)
|++||||+||||||++++|.+++.+||+++ .+|+++||++|++| ++|++|+++|++++++|.++|++|+.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999 99999999999999 89999999999999999999999975
No 30
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=5.1e-20 Score=146.21 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=68.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 197 p~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
.++||||+||||||++++|.+++.+||+++ .+|+++||++|++|++++|++|.++|++++++|.++|++|+.+.+.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~ 78 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRP 78 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCC
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999987644
No 31
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=8.1e-20 Score=144.03 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=71.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|.++|++|+.+.+.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk 76 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRK 76 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC
Confidence 47899999999999999999999999999 9999999999999999999999999999999999999999876543
No 32
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.78 E-value=1.3e-19 Score=139.97 Aligned_cols=68 Identities=32% Similarity=0.583 Sum_probs=65.8
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDY 266 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Y 266 (388)
+||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|+++|++|.++|++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999986 9999999999999999999999999999999999999876
No 33
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.7e-19 Score=144.93 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=71.2
Q ss_pred CCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 046368 199 HPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKTG 273 (388)
Q Consensus 199 ~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~~ 273 (388)
+||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|+.++++|..+|++|+.+....
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~ 77 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 77 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 6899999999999999999999999999 99999999999999999999999999999999999999998765443
No 34
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=7.6e-19 Score=147.52 Aligned_cols=76 Identities=28% Similarity=0.493 Sum_probs=71.1
Q ss_pred ccCCCCCCC-CCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 192 IKRRDPAHP-KPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 192 ~~~kdp~~P-KrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
++.+||++| |||+|||+|||+++|.+++ +++ .||+++||++|++|+++||++|+++|++++++|..+|++|+..
T Consensus 9 kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 84 (108)
T 1v64_A 9 LKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLES 84 (108)
T ss_dssp SSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999 9999999999999999998 567 9999999999999999999999999999999999999999886
Q ss_pred hc
Q 046368 270 LK 271 (388)
Q Consensus 270 ~k 271 (388)
+.
T Consensus 85 ~~ 86 (108)
T 1v64_A 85 LP 86 (108)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 35
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.77 E-value=5.4e-19 Score=156.83 Aligned_cols=77 Identities=34% Similarity=0.656 Sum_probs=74.2
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRE 268 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~ 268 (388)
++.+||++||||+|||+|||+++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|..+|++|+.
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999999999999999 999999999999999999999999999999999999999975
No 36
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=134.55 Aligned_cols=66 Identities=36% Similarity=0.628 Sum_probs=63.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDY 266 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Y 266 (388)
++||||+|||+||++++|.+++.+|| .+|+++||++|++|++++|++|+++|++++++|.++|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999998877 6999999999999999999999999999999999999988
No 37
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.2e-19 Score=152.66 Aligned_cols=68 Identities=24% Similarity=0.508 Sum_probs=62.8
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhHhhhccCC
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQIYFFRSQD 74 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~~~~~~~~ 74 (388)
+|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+++ ++.||.+|++||++||+ |+.+.++
T Consensus 41 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-----~~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 41 IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp CCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----TTHHHHHHHHHHSHHHH-HHHHTTC
T ss_pred CceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHH-HHhCccc
Confidence 59999999999999999999999999999999999999999998 57999999999999999 4455544
No 38
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.76 E-value=5.1e-19 Score=152.01 Aligned_cols=62 Identities=26% Similarity=0.533 Sum_probs=60.0
Q ss_pred CCccCCeecccchhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHhH
Q 046368 1 IPIIGGKELDLHRLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQI 67 (388)
Q Consensus 1 iP~i~gk~LDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~~ 67 (388)
+|+|+|++||||+||.+|+++|||++||.+++|++|+..||+++ ++.||++|++||++||++
T Consensus 40 ~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 40 IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLESIYFRILLPYERH 101 (123)
T ss_dssp CCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred CceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999998 789999999999999993
No 39
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=155.95 Aligned_cols=78 Identities=33% Similarity=0.659 Sum_probs=74.6
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
++.+||++||||+||||||++++|..++.+||+++ .+|+++||++|++|++++|++|+++|++++++|..+|++|+++
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999999999999 9999999999999999999999999999999999999999864
No 40
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.75 E-value=1.4e-18 Score=141.65 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=70.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 198 AHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 198 ~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
+.||||+|||+||+++.|..++.++|+ . .+|+|+||++|++|+++||++|+++|+++|++|.++|.+|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 589999999999999999999999999 6 9999999999999999999999999999999999999999876554
No 41
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=152.48 Aligned_cols=80 Identities=31% Similarity=0.550 Sum_probs=75.3
Q ss_pred ccccCCCCCCCCCCCChhHHHHHHHHHHhcccCCC--Cc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046368 190 SEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPG--KD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDY 266 (388)
Q Consensus 190 ~~~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~--~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Y 266 (388)
+++.++||++||||+|||+||++++|.+|+.+||+ +. .+|+++||++|++|+++||++|+++|++++++|..+|++|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34667899999999999999999999999999999 46 9999999999999999999999999999999999999999
Q ss_pred HHh
Q 046368 267 RER 269 (388)
Q Consensus 267 k~k 269 (388)
...
T Consensus 86 ~~~ 88 (173)
T 2yrq_A 86 IPP 88 (173)
T ss_dssp CCC
T ss_pred hhh
Confidence 753
No 42
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=1.4e-17 Score=138.22 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=66.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERLKT 272 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~k~ 272 (388)
...+||||+|||||||++++. ...++++. .||+++||++|++|+++||++|+++|+++|++|.++|++|+..+..
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 446899999999999999975 34556677 8999999999999999999999999999999999999999986643
No 43
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=8.9e-18 Score=156.68 Aligned_cols=76 Identities=33% Similarity=0.529 Sum_probs=71.9
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
+..+||++||||+|||||||+++|.+++.++|+ +|+++||++|++|++++|++|+++|++++++|..+|++|+.++
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~---ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ---EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 446799999999999999999999999988775 9999999999999999999999999999999999999999886
No 44
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=157.72 Aligned_cols=76 Identities=33% Similarity=0.529 Sum_probs=71.9
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
+..+||++||||+|||||||+++|.+++.+||+ +|+++||++|++|++++|++|+++|++++++|.++|++|++++
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~---ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ---EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH---HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 446799999999999999999999999988775 9999999999999999999999999999999999999999986
No 45
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=152.63 Aligned_cols=77 Identities=27% Similarity=0.437 Sum_probs=73.7
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 193 KRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 193 ~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
..++|++||||+|||+||++++|.+++.+||+++ .||+++||++|++|+++||++|+++|++++++|.++|.+|...
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999 9999999999999999999999999999999999999999753
No 46
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.1e-17 Score=129.34 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=58.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc--HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD--REISRMIGELWNKLKESEKAVYQEKALKD 255 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~--~EisK~lge~Wk~LseeeK~~Y~e~A~~d 255 (388)
++++||||+||||||++++|.+|+.+||+++ .||+|+||++|++|++++|++|+++|+++
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999995 99999999999999999999999999987
No 47
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-17 Score=132.63 Aligned_cols=68 Identities=25% Similarity=0.366 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 046368 194 RRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMI---GELWNKLKESEKAVYQEKALKDKERYRIEM 263 (388)
Q Consensus 194 ~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~l---ge~Wk~LseeeK~~Y~e~A~~dK~rY~~em 263 (388)
..++++||||+||||||++++|.+|+.+ ++. .||+++| |++|++|+++||++|+++|+++|++|.+++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999988 777 9999999 999999999999999999999999998876
No 48
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=146.36 Aligned_cols=75 Identities=29% Similarity=0.475 Sum_probs=71.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046368 196 DPAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRERL 270 (388)
Q Consensus 196 dp~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k~ 270 (388)
.|++||||+|||+||++++|..++.+||+++ .||+++||++|++|+++||++|+++|.+++++|.++|.+|....
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 81 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccC
Confidence 3578999999999999999999999999999 99999999999999999999999999999999999999997543
No 49
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-17 Score=133.83 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=60.9
Q ss_pred ccCCCCCCCCCCCChhHHHHHHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 046368 192 IKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAVYQEKALKDKERYRIE 262 (388)
Q Consensus 192 ~~~kdp~~PKrP~saY~lF~ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~e 262 (388)
+.++||++||||+|||||||+++|.+|+.+||+++ .+|+ ++|++|++++|++|+++|+++|++|+.+
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34569999999999999999999999999999987 4555 9999999999999999999999999753
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.58 E-value=1.8e-15 Score=134.12 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcccCCCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046368 197 PAHPKPNRSGYNFFFAEQHARLKPLHPGKD-REISRMIGELWNKLKESEKAVYQEKALKDKERYRIEMEDYRER 269 (388)
Q Consensus 197 p~~PKrP~saY~lF~ke~r~~lk~~~P~~~-~EisK~lge~Wk~LseeeK~~Y~e~A~~dK~rY~~em~~Yk~k 269 (388)
+++||||+||||+|+.++|.+|+.+||++. .||+++||++|++|++++|++|.++|+.++++|..+|++|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999764
No 51
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=75.47 E-value=2.2 Score=29.83 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=28.5
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+| .+.|..|+..|.- -.+...|..|..+|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG-----RIGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT-----CCHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC-----CCHHHHHHHHHHHcCc
Confidence 4667777776 2479999999842 2256889999999864
No 52
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=74.93 E-value=3.3 Score=30.81 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=31.1
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. +.|..|+..|+|.. -.+..+|..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNN---RTSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSS---CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCC---CCHHHHHHHHHHHcCC
Confidence 47777887772 48999999998632 2356889999999876
No 53
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=73.39 E-value=3.5 Score=28.75 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. ..|..|+..|.- -.+..++..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN-----RTDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT-----CCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC-----CCHHHHHHHHHHHcCc
Confidence 46677777763 479999999842 2245789999999864
No 54
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.43 E-value=2.8 Score=31.28 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=29.5
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+| .+.|..|+..|+- -.+...|..|.++|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR-----KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT-----CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC-----CCHHHHHHHHHHHcCC
Confidence 5777888887 2589999999862 2356789999888865
No 55
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=68.79 E-value=3.9 Score=29.41 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=28.5
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|- +.|..|+..|.- -.+..++..|.++|.|
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFGQ-------QDWKFLASHFPN-----RTDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHCSS-----SCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhCC-------CCHHHHHHHccC-----CCHHHHHHHHHHHcCC
Confidence 46677777762 589999999742 2245789999988864
No 56
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.71 E-value=5.4 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=27.8
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
.|...|..+|- +.|..|+..|+-- .+...+.+|.++|.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~R-----t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCTK-----TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTTS-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCCC-----CHHHHHHHHHHHcc
Confidence 36667777762 4899999999532 24578999998885
No 57
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=61.59 E-value=9.9 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=28.5
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L 61 (388)
.|...|..+| .+.|..|+..|++.. -.+..++..|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNN---RTSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSS---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCC---CCHHHHHHHHHHHH
Confidence 4677787777 248999999998642 23557888888776
No 58
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.98 E-value=8.9 Score=28.76 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=32.0
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYE 65 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE 65 (388)
.|...|..+|.-. +..+.|..|+..|+-- .+..++.+|.+||.+-.
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~R-----t~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGNR-----TAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSSS-----CHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHH
Confidence 4666777777311 1226899999998632 24588999999998753
No 59
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=54.45 E-value=18 Score=26.97 Aligned_cols=41 Identities=10% Similarity=0.328 Sum_probs=30.1
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHh
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQ 66 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~ 66 (388)
.|...|..+|- .|..|+..|.--+ ...+|.+|..||.+...
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~Rt-----~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGSRT-----VLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSSSC-----HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHh
Confidence 45667777763 8999999875322 45889999999887643
No 60
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.36 E-value=17 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=28.2
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHHh
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYEQ 66 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE~ 66 (388)
.|...|..+| +.|..|+..+| . .+..+|.+|..||.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHhc
Confidence 3555666555 27999999544 2 246889999999988643
No 61
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=50.63 E-value=22 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.400 Sum_probs=28.8
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
.|...|..+|. +.|..|+..+.|..- .+..+|..|..+|-
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 46777888772 369999998876542 24578888877764
No 62
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=49.65 E-value=19 Score=25.70 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.9
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
+|...|..+| .+.|..|+..|+... .+...+.+|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~R----t~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNAR----TKEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSC----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCC----CHHHHHHHHHHHcc
Confidence 5677787777 258999999997432 24567888887764
No 63
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=44.42 E-value=15 Score=29.46 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=28.0
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. +.|..|+..|+-- .+...+..|.++|.|
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMITR-----NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTTS-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCCC-----CHHHHHHHHHHHHcc
Confidence 57778888874 5799999998622 245677778777754
No 64
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=40.62 E-value=19 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=27.1
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
.|...|..+|. +.|..|+..|.- -.+...+..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLKG-----RIGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTSTT-----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhcC-----CCHHHHHHHHHhccC
Confidence 56777888875 469999998842 124567888888774
No 65
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=39.07 E-value=17 Score=27.89 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=24.9
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHh
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSL 60 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~ 60 (388)
+|...|..+| +.|..|+..|+-- .....+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~R-----T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGSR-----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSSC-----CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCCC-----CHHHHHHHHHHh
Confidence 5667788887 5899999999732 245667777654
No 66
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=33.91 E-value=25 Score=31.78 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCCc-HHHHH-HHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 046368 223 PGKD-REISR-MIGELWNKLKESEKAVYQEKALKD-KERYRIEMEDYR 267 (388)
Q Consensus 223 P~~~-~EisK-~lge~Wk~LseeeK~~Y~e~A~~d-K~rY~~em~~Yk 267 (388)
|-.+ ..|++ .||..|+.+++++|+.|.+.-... ...|-..+..|.
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445 55555 468999999999999999776654 556777777775
No 67
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=30.36 E-value=52 Score=24.88 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=26.7
Q ss_pred hhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 14 LFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 14 Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
|-.+|..+|.- ..+.|..|+..|+-- ....++.+|..++.
T Consensus 29 L~~al~~~g~~----~~~rW~~IA~~vpGR-----T~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 29 LELALQQYPRG----SSDCWDKIARCVPSK-----SKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHSCSS----SHHHHHHHGGGCSSS-----CHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC----CCchHHHHHHHcCCC-----CHHHHHHHHHHHHH
Confidence 44556666621 346899999999632 24578888887764
No 68
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=30.08 E-value=40 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=27.6
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. +.|..|+..|.-- .+..++..|.++|.+
T Consensus 37 ~L~~~v~~~g~-------~~W~~Ia~~l~~R-----t~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 37 RVIEHVQKYGP-------KRWSDIAKHLKGR-----IGKQCRERWHNHLNP 75 (128)
T ss_dssp HHHHHHHHTCS-------CCHHHHHHHSSSC-----CHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCC-------CCHHHHHHHhcCC-----cHHHHHHHHHHhccc
Confidence 56777888874 4699999988522 245678888887753
No 69
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=29.52 E-value=61 Score=24.95 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=26.4
Q ss_pred HHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHHH
Q 046368 212 AEQHARLKPLHPGKD---REISRMIGELWNKLKESEKAV 247 (388)
Q Consensus 212 ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~~ 247 (388)
+.+|..++.-||+.. .+..+.|.+.|..|++..+..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 345556666788764 788899999999998766543
No 70
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=29.07 E-value=49 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=26.2
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLR 62 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~ 62 (388)
.|...|..+| +.|..|+..| |.- ....++..|..+|-
T Consensus 66 ~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 66 IIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHS--------SCHHHHHTTC--TTC---CHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC--------CCHHHHHHHc--CCC---CHHHHHHHHHHHHh
Confidence 4677777777 4799999876 321 24578888887764
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=27.88 E-value=51 Score=23.79 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=31.0
Q ss_pred hhhHHHHhccch-hhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhH
Q 046368 13 RLFVEVTARGGI-EKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLL 61 (388)
Q Consensus 13 ~Ly~~V~~~GG~-~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L 61 (388)
.|+..|...... ..|..+..|++++... +|.. .-...|..|.++|
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~H---twqSwRdRy~k~l 57 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQH---SWQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSC---CSHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCC---CHHHHHHHHHHHc
Confidence 577777666321 3788999999998822 3331 2357899999987
No 72
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=26.76 E-value=53 Score=27.07 Aligned_cols=39 Identities=10% Similarity=0.296 Sum_probs=28.4
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDY 64 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~y 64 (388)
.|...|..+|+ .|..|+..|.-- ....++..|..+|.+-
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~gR-----t~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIPGR-----TDNAIKNRWNSSISKR 102 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTSTTC-----CHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 46777888884 699999876422 2457899998888654
No 73
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=25.76 E-value=82 Score=24.92 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=28.9
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDYE 65 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~yE 65 (388)
.|...|..+| +.|..|+..|.-- ....++..|..++....
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~gR-----t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLKNR-----SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHSSS-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------cCHHHHHHHCCCC-----CHHHHHHHHHHHHhhHH
Confidence 5677788887 3799999987322 24578999988876643
No 74
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=24.69 E-value=86 Score=22.82 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHhcccCCCCc---HHHHHHHHHHHhcCCHHHHH
Q 046368 212 AEQHARLKPLHPGKD---REISRMIGELWNKLKESEKA 246 (388)
Q Consensus 212 ke~r~~lk~~~P~~~---~EisK~lge~Wk~LseeeK~ 246 (388)
+.+|..++.-||+.. .+..+.|.+.|..|++..+.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 344555666677765 57888999999999866554
No 75
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=23.52 E-value=56 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=26.8
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. +.|..|+..|.- -.+...+..|.++|.+
T Consensus 12 ~L~~~v~~~g~-------~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 12 LIREYVKENGP-------QNWPRITSFLPN-----RSPKQCRERWFNHLDP 50 (131)
T ss_dssp HHHHHHHHHCS-------CCGGGGTTSCTT-----SCHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCc-------CCHHHHHHHHCC-----CCHHHHHHHHhhccCc
Confidence 46667777762 479999998842 1245678888888854
No 76
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.38 E-value=64 Score=24.28 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=27.2
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|-++|..+++- ..++|..|+..|| . .+..++.+|..++..
T Consensus 18 ~fe~al~~~p~~----t~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 18 QLTRSMVKFPGG----TPGRWEKIAHELG--R----SVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHHSCTT----CTTHHHHHHHHHT--S----CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC----CCcHHHHHHHHhC--C----CHHHHHHHHHHHHHh
Confidence 344556666542 1478999999996 1 345778888877654
No 77
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=22.26 E-value=1.4e+02 Score=21.85 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHhcccCCCCc-----HHHHHHHHHHHhcCCHHHHH
Q 046368 213 EQHARLKPLHPGKD-----REISRMIGELWNKLKESEKA 246 (388)
Q Consensus 213 e~r~~lk~~~P~~~-----~EisK~lge~Wk~LseeeK~ 246 (388)
.+|..++.-||+.. .+..+.|.+.|..|++..+.
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 34445555666653 67888999999999876653
No 78
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=22.19 E-value=69 Score=26.22 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=27.1
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. .|..|+..|.-- .+..++..|.++|.+
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~R-----t~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPNR-----NARQCRDRWKNYLAP 58 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTTC-----CHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCCC-----CHHHHHHHHhhhccc
Confidence 46777887763 599999987522 245778888888754
No 79
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=22.05 E-value=36 Score=20.77 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 046368 195 RDPAHPKPN 203 (388)
Q Consensus 195 kdp~~PKrP 203 (388)
.|..+||+-
T Consensus 16 ddddppkkr 24 (28)
T 3ukx_C 16 DDDDPPKKR 24 (28)
T ss_dssp CSSSCCSCC
T ss_pred cCCCchhhh
Confidence 344566653
No 80
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=27.20 E-value=19 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=25.7
Q ss_pred hhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHHH
Q 046368 14 LFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRDY 64 (388)
Q Consensus 14 Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~y 64 (388)
|...|..+| +.|..|+..|+--+ ...++.+|..+|..+
T Consensus 27 l~~~~~~~G--------~~W~~IA~~l~gRt-----~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 27 AKKGLLEHG--------RNWSAIARMVGSKT-----VSQCKNFYFNYKKRQ 64 (89)
Confidence 444555554 36999999875322 347889998888765
No 81
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=1.2e+02 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHhcccCCCCc------HHHHHHHHHHHhcCCHHHHH
Q 046368 213 EQHARLKPLHPGKD------REISRMIGELWNKLKESEKA 246 (388)
Q Consensus 213 e~r~~lk~~~P~~~------~EisK~lge~Wk~LseeeK~ 246 (388)
.+|..++.-||+.. .+..+.|.+.|..|++..+.
T Consensus 37 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 37 AYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34555556666653 57888999999999877654
No 82
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.71 E-value=1.4e+02 Score=21.95 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHhcccCCCCc-----HHHHHHHHHHHhcCCHHHH
Q 046368 212 AEQHARLKPLHPGKD-----REISRMIGELWNKLKESEK 245 (388)
Q Consensus 212 ke~r~~lk~~~P~~~-----~EisK~lge~Wk~LseeeK 245 (388)
+.+|..++.-||+.. .+..+.|.+.|..|++..+
T Consensus 26 ~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 26 KAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 344555666777763 5778889999999987654
No 83
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=20.42 E-value=1.1e+02 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=26.3
Q ss_pred hhhHHHHhccchhhhhhccchhhhhhhhCCCCCCCcHHHHHHHHHHHhHHH
Q 046368 13 RLFVEVTARGGIEKIIKERRWKEVTAIFNFPSTATNASFVLRKYYQSLLRD 63 (388)
Q Consensus 13 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~tsas~~Lk~~Y~k~L~~ 63 (388)
.|...|..+|. .|..|+..|.-- ....++..|..++..
T Consensus 72 ~L~~~v~~~G~--------~W~~Ia~~l~gR-----t~~~~k~rw~~l~~k 109 (126)
T 3osg_A 72 LLVQKIQEYGR--------QWAIIAKFFPGR-----TDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHHHHHCS--------CHHHHHTTSTTC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC-----CHHHHHHHHHHHHHh
Confidence 46677777773 699999876421 245788888777654
Done!