Query 046369
Match_columns 240
No_of_seqs 165 out of 731
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 7.3E-31 1.6E-35 206.4 7.6 104 60-191 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 99.9 1.7E-27 3.8E-32 184.3 5.2 102 62-189 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 64.2 4 8.6E-05 34.1 1.5 18 151-168 62-79 (139)
4 PF11460 DUF3007: Protein of u 41.5 28 0.0006 27.8 2.8 51 108-161 12-75 (104)
5 PF06570 DUF1129: Protein of u 36.1 28 0.00061 30.1 2.3 18 149-166 189-206 (206)
6 PF12273 RCR: Chitin synthesis 29.9 44 0.00096 26.8 2.4 8 158-165 26-33 (130)
7 PF06679 DUF1180: Protein of u 28.0 26 0.00056 30.0 0.7 18 150-167 116-135 (163)
8 KOG0057 Mitochondrial Fe/S clu 17.5 87 0.0019 32.0 2.1 24 144-167 189-212 (591)
9 PF14714 KH_dom-like: KH-domai 15.6 1.3E+02 0.0027 22.4 2.1 20 149-168 56-75 (80)
10 COG3771 Predicted membrane pro 14.6 1.4E+02 0.0029 23.4 2.1 23 136-158 50-72 (97)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.97 E-value=7.3e-31 Score=206.38 Aligned_cols=104 Identities=46% Similarity=0.991 Sum_probs=83.5
Q ss_pred CCCCcCcccccCCccccccccchhhhhhhHHHhHhcCCCCCCccccccccccchhhHHHHHHhHhhccCCCcchhhhhhh
Q 046369 60 EDWTTGICGCFSDLESCATGFLCPCVLFGRNVETLRDDIPWANACVCHGMCIEGGLALAAATVLFHGIDPKTSFLICEGL 139 (240)
Q Consensus 60 ~~WstGLfdC~~D~~~C~~~~fCPCv~~G~n~erl~~~~~~~~~C~C~~~~v~Gg~~~~~~ta~f~g~~P~~~~L~~~gl 139 (240)
++|++||||||+|+++|++++||||+++|||++|++.+. ++|. ..++.+.+++++ .|
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~---~~C~------~~~~~~~~~~~~-------------~~- 57 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA---GECL------CGGLTAIAMSAL-------------CG- 57 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCC---Cchh------hHHHHHHHHHHH-------------Hh-
Confidence 589999999999999999999999999999999999532 2443 122222211110 01
Q ss_pred hhhhhhhchhhhHHHHHHHHHhCCCCCCCCchhhhccchhhHHHHhHHHHHh
Q 046369 140 FFAWWMCGIYTGLLRQSLQKKYHLKNAPCDPCLVHCCLHWCALCQEHREMKN 191 (240)
Q Consensus 140 ~f~w~~~~i~~~~~R~~IR~kY~I~Gs~~~Dc~~~~cC~~CaLcQe~REl~~ 191 (240)
+.++|.+.+|++||+||||+|+.++||++++||++|+||||+||||+
T Consensus 58 -----~~~~~~~~~R~~~R~ry~i~gs~~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 58 -----FCGCYTCFIRIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred -----HHHHHHHHHHHHHHHHhCCCCCCcccchHHHHhhhHHHHHHHHHHhC
Confidence 22367889999999999999999999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.94 E-value=1.7e-27 Score=184.32 Aligned_cols=102 Identities=39% Similarity=0.871 Sum_probs=79.2
Q ss_pred CCcCcccccCCccccccccchhhhhhhHHHhHhcCCCCCCc----cccccccccchhhHHHHHHhHhhccCCCcchhhhh
Q 046369 62 WTTGICGCFSDLESCATGFLCPCVLFGRNVETLRDDIPWAN----ACVCHGMCIEGGLALAAATVLFHGIDPKTSFLICE 137 (240)
Q Consensus 62 WstGLfdC~~D~~~C~~~~fCPCv~~G~n~erl~~~~~~~~----~C~C~~~~v~Gg~~~~~~ta~f~g~~P~~~~L~~~ 137 (240)
|++||||||+|+++|++++||||++++++++|++.+..+.. .|. +. ...+. +
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~-----------~~--~~~~~----------~- 56 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCC-----------LC--FCCFG----------C- 56 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHH-----------HH--HHHHH----------H-
Confidence 99999999999999999999999999999999998643321 221 00 00000 0
Q ss_pred hhhhhhhhhchhhhHHHHHHHHHhCCCCCCCCchhhhccchhhHHHHhHHHH
Q 046369 138 GLFFAWWMCGIYTGLLRQSLQKKYHLKNAPCDPCLVHCCLHWCALCQEHREM 189 (240)
Q Consensus 138 gl~f~w~~~~i~~~~~R~~IR~kY~I~Gs~~~Dc~~~~cC~~CaLcQe~REl 189 (240)
..++ ++.++|.+.+|++||+||||+|+.++||++++||++|||+||+|||
T Consensus 57 ~~~~--~l~~~~~~~~R~~iR~ry~I~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 57 AACL--GLGWCYGCSLRQQIRERYGIQGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred HHHH--HHhHhhhhhHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 0000 0123477899999999999999999999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=64.24 E-value=4 Score=34.06 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhCCCCCCC
Q 046369 151 GLLRQSLQKKYHLKNAPC 168 (240)
Q Consensus 151 ~~~R~~IR~kY~I~Gs~~ 168 (240)
...|+.||.||+|+.+--
T Consensus 62 e~mRq~IRdKY~l~k~e~ 79 (139)
T PF05835_consen 62 EKMRQHIRDKYGLKKKEE 79 (139)
T ss_dssp HHHHHHHHHHHT------
T ss_pred HHHHHHHHhhcccccccc
Confidence 358999999999998653
No 4
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=41.51 E-value=28 Score=27.79 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=26.6
Q ss_pred ccccchhhHHHHHHhHhhccCC-----Ccchhhhhhhhhhhhhhchh--------hhHHHHHHHHHh
Q 046369 108 GMCIEGGLALAAATVLFHGIDP-----KTSFLICEGLFFAWWMCGIY--------TGLLRQSLQKKY 161 (240)
Q Consensus 108 ~~~v~Gg~~~~~~ta~f~g~~P-----~~~~L~~~gl~f~w~~~~i~--------~~~~R~~IR~kY 161 (240)
++++.|+..|..+- +.|+++ ++..++..|+ +.|...-+| .+.+|++.|+.|
T Consensus 12 gv~~~Gg~~Y~~l~--~~G~d~~~AGi~sq~~lv~gl-vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~ 75 (104)
T PF11460_consen 12 GVFLLGGLLYGGLQ--AAGLDSLSAGIWSQALLVLGL-VGWVSSYLFRVVTGKMTYMQQRKDYEEAV 75 (104)
T ss_pred HHHHHHHHHHHHHH--HcCCCchhhhHHHHHHHHHHH-HHHHhHHHhhhccCCCcHHHHHHHHHHHH
Confidence 45566777665543 235554 2223333343 567544333 245677777766
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.09 E-value=28 Score=30.09 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHhCCCCC
Q 046369 149 YTGLLRQSLQKKYHLKNA 166 (240)
Q Consensus 149 ~~~~~R~~IR~kY~I~Gs 166 (240)
.....|.-+|+||||+|+
T Consensus 189 i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 189 IAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 356689999999999985
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.89 E-value=44 Score=26.78 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.6
Q ss_pred HHHhCCCC
Q 046369 158 QKKYHLKN 165 (240)
Q Consensus 158 R~kY~I~G 165 (240)
|+|.|++-
T Consensus 26 R~r~G~~P 33 (130)
T PF12273_consen 26 RRRRGLQP 33 (130)
T ss_pred HhhcCCCC
Confidence 33336553
No 7
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.96 E-value=26 Score=29.96 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=11.0
Q ss_pred hhHHHHHHH--HHhCCCCCC
Q 046369 150 TGLLRQSLQ--KKYHLKNAP 167 (240)
Q Consensus 150 ~~~~R~~IR--~kY~I~Gs~ 167 (240)
....|.+.| +||||-++.
T Consensus 116 ~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 116 TFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred HHhhccccccceeecccCCC
Confidence 344555444 689987654
No 8
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=17.51 E-value=87 Score=31.96 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.0
Q ss_pred hhhchhhhHHHHHHHHHhCCCCCC
Q 046369 144 WMCGIYTGLLRQSLQKKYHLKNAP 167 (240)
Q Consensus 144 ~~~~i~~~~~R~~IR~kY~I~Gs~ 167 (240)
....++...+|.++|++||...|.
T Consensus 189 ~a~Ti~~t~~Rn~fR~~~N~Adn~ 212 (591)
T KOG0057|consen 189 AAFTIVVTRWRNRFRKAMNNADNS 212 (591)
T ss_pred heeEEeehhHHHHHHHHHHhhhhH
Confidence 344456788999999999998864
No 9
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=15.63 E-value=1.3e+02 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHhCCCCCCC
Q 046369 149 YTGLLRQSLQKKYHLKNAPC 168 (240)
Q Consensus 149 ~~~~~R~~IR~kY~I~Gs~~ 168 (240)
|.=++..+||+.|++.|.+.
T Consensus 56 Y~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHCCCCceeE
Confidence 55678899999999999874
No 10
>COG3771 Predicted membrane protein [Function unknown]
Probab=14.62 E-value=1.4e+02 Score=23.39 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhchhhhHHHHHHH
Q 046369 136 CEGLFFAWWMCGIYTGLLRQSLQ 158 (240)
Q Consensus 136 ~~gl~f~w~~~~i~~~~~R~~IR 158 (240)
..|+.++|..++.+.-..|-+++
T Consensus 50 ~~G~~lgwli~g~fy~k~~l~~~ 72 (97)
T COG3771 50 AAGFALGWLICGLFYLKVRLSLM 72 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778777666544444433
Done!