Query 046369
Match_columns 240
No_of_seqs 165 out of 731
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 77.5 1 3.5E-05 30.0 1.7 12 152-163 38-49 (49)
2 3rk3_E Complexin-1; snare prot 76.3 1.2 4.1E-05 31.0 1.8 14 152-165 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 73.2 1.5 5.3E-05 31.8 1.8 14 152-165 45-58 (79)
4 2lo3_A SAGA-associated factor 24.9 26 0.0009 22.7 1.1 20 32-52 10-29 (44)
5 1x62_A C-terminal LIM domain p 13.6 1.3E+02 0.0044 20.3 2.7 32 39-70 14-45 (79)
6 2cor_A Pinch protein; LIM doma 11.4 3.3E+02 0.011 18.2 4.4 33 38-70 13-45 (79)
7 3mhs_E SAGA-associated factor 11.4 81 0.0028 23.7 1.1 21 31-52 67-87 (96)
8 2co8_A NEDD9 interacting prote 10.4 2.8E+02 0.0096 18.8 3.7 33 38-70 13-46 (82)
9 1wig_A KIAA1808 protein; LIM d 9.3 2.6E+02 0.0088 18.5 3.1 31 40-70 5-35 (73)
10 1zbd_B Rabphilin-3A; G protein 8.2 1.3E+02 0.0045 23.4 1.3 16 179-194 100-115 (134)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.53 E-value=1 Score=29.97 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=10.8
Q ss_pred HHHHHHHHHhCC
Q 046369 152 LLRQSLQKKYHL 163 (240)
Q Consensus 152 ~~R~~IR~kY~I 163 (240)
.+|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 479999999997
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=76.26 E-value=1.2 Score=30.99 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCCC
Q 046369 152 LLRQSLQKKYHLKN 165 (240)
Q Consensus 152 ~~R~~IR~kY~I~G 165 (240)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 47999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=73.23 E-value=1.5 Score=31.75 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCCC
Q 046369 152 LLRQSLQKKYHLKN 165 (240)
Q Consensus 152 ~~R~~IR~kY~I~G 165 (240)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 47999999999985
No 4
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.87 E-value=26 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.795 Sum_probs=15.7
Q ss_pred CcccCcccceecccCCCCCCC
Q 046369 32 PIQVPQLVVHRCCECGQPLPE 52 (240)
Q Consensus 32 pi~vP~~~~~~~~~~~qp~P~ 52 (240)
|++ ++++-+.|..||+|+..
T Consensus 10 ple-~~~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 10 PLD-KPIQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCC-CCCCEEECTTTCCEEET
T ss_pred ccC-ccccchhhcccCCcchH
Confidence 555 67888999999998653
No 5
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=13.59 E-value=1.3e+02 Score=20.32 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=22.2
Q ss_pred cceecccCCCCCCCCCCCCCCCCCCcCccccc
Q 046369 39 VVHRCCECGQPLPESYEPPSDEDWTTGICGCF 70 (240)
Q Consensus 39 ~~~~~~~~~qp~P~s~~~~~~~~WstGLfdC~ 70 (240)
...+|..|++++-..+-......|+..=|-|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~ 45 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT 45 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTTSCS
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcCeeC
Confidence 35689999998765544445678988766663
No 6
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=11.37 E-value=3.3e+02 Score=18.24 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccceecccCCCCCCCCCCCCCCCCCCcCccccc
Q 046369 38 LVVHRCCECGQPLPESYEPPSDEDWTTGICGCF 70 (240)
Q Consensus 38 ~~~~~~~~~~qp~P~s~~~~~~~~WstGLfdC~ 70 (240)
+...+|..|++++-..+-......|+..=|-|.
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~ 45 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCA 45 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCS
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCCEeC
Confidence 445679999998876555556788998877774
No 7
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=11.37 E-value=81 Score=23.73 Aligned_cols=21 Identities=33% Similarity=0.877 Sum_probs=17.2
Q ss_pred CCcccCcccceecccCCCCCCC
Q 046369 31 QPIQVPQLVVHRCCECGQPLPE 52 (240)
Q Consensus 31 qpi~vP~~~~~~~~~~~qp~P~ 52 (240)
.|.+.| ++-|.|+.||+|+..
T Consensus 67 ~~Ld~~-~~YRvCn~CGkPI~l 87 (96)
T 3mhs_E 67 DPLDKP-IQYRVCEKCGKPLAL 87 (96)
T ss_dssp STTSSS-CCCEEETTTCCEECG
T ss_pred ccCCCc-ccchhhhccCCceeH
Confidence 477777 899999999998753
No 8
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=10.40 E-value=2.8e+02 Score=18.78 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred ccceecccCCCCCC-CCCCCCCCCCCCcCccccc
Q 046369 38 LVVHRCCECGQPLP-ESYEPPSDEDWTTGICGCF 70 (240)
Q Consensus 38 ~~~~~~~~~~qp~P-~s~~~~~~~~WstGLfdC~ 70 (240)
....+|..|++++- ..+-...+..|+..=|-|.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~ 46 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCH 46 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCS
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEc
Confidence 34568999999883 3333345678998877774
No 9
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=9.27 E-value=2.6e+02 Score=18.53 Aligned_cols=31 Identities=10% Similarity=0.311 Sum_probs=22.6
Q ss_pred ceecccCCCCCCCCCCCCCCCCCCcCccccc
Q 046369 40 VHRCCECGQPLPESYEPPSDEDWTTGICGCF 70 (240)
Q Consensus 40 ~~~~~~~~qp~P~s~~~~~~~~WstGLfdC~ 70 (240)
..+|..|++++-..+-...+..|+..-|-|.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~ 35 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCV 35 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeC
Confidence 3578888888766555556789998877774
No 10
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=8.16 E-value=1.3e+02 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=13.4
Q ss_pred hhHHHHhHHHHHhccc
Q 046369 179 WCALCQEHREMKNHLS 194 (240)
Q Consensus 179 ~CaLcQe~REl~~R~~ 194 (240)
-|.+||..|||+.+..
T Consensus 100 ~C~vC~k~rel~~kSG 115 (134)
T 1zbd_B 100 LCKICLEQREVWKRSG 115 (134)
T ss_dssp EEHHHHHHHHHHHHTS
T ss_pred echhhHHHHHHHHhhh
Confidence 5889999999987653
Done!