Query 046369
Match_columns 240
No_of_seqs 165 out of 731
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 20:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qtva5 g.41.10.1 (A:45-119) S 11.1 70 0.0051 20.9 2.4 33 28-60 20-55 (75)
2 d1mkya3 d.52.5.1 (A:359-439) P 9.4 96 0.007 20.3 2.7 20 149-168 53-73 (81)
3 d2dj7a2 g.39.1.3 (A:8-43) Acti 7.7 49 0.0036 19.0 0.4 28 38-65 6-34 (36)
4 d1tjla2 g.39.1.13 (A:111-151) 7.7 79 0.0057 18.2 1.4 16 178-193 23-38 (41)
5 d1twfl_ g.41.9.2 (L:) RBP12 su 5.9 97 0.0071 18.7 1.1 18 31-48 12-29 (46)
6 d2csba2 a.60.2.4 (A:294-350) T 5.8 1.1E+02 0.008 18.6 1.3 10 156-165 7-16 (57)
7 d1d4ua2 g.39.1.5 (A:1-36) DNA 5.1 1.9E+02 0.014 16.4 2.0 30 40-72 5-34 (36)
8 d2pnga1 a.28.1.1 (A:1-76) Type 4.8 2.3E+02 0.017 17.6 2.7 19 148-166 39-57 (76)
9 d1nexa1 a.157.1.1 (A:116-185) 4.8 1.6E+02 0.012 18.6 1.8 17 150-166 44-60 (70)
10 d2fy6a1 c.47.1.10 (A:33-175) P 4.7 79 0.0058 21.5 0.1 16 170-185 25-40 (143)
No 1
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.08 E-value=70 Score=20.87 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCCCccc-CcccceecccCCC--CCCCCCCCCCCC
Q 046369 28 DLNQPIQV-PQLVVHRCCECGQ--PLPESYEPPSDE 60 (240)
Q Consensus 28 ~~nqpi~v-P~~~~~~~~~~~q--p~P~s~~~~~~~ 60 (240)
-+|-=+.+ .+...|+|+.|++ ++|.+|....+.
T Consensus 20 yiNP~~~~~~~~~~W~C~~C~~~N~lP~~Y~~~~~~ 55 (75)
T d2qtva5 20 ILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQE 55 (75)
T ss_dssp BCCTTCCEETTTTEEECTTTCCEEECCTTTSSCCTT
T ss_pred EECCceEEecCCCEEEecccCccCcCChhhccCCcc
Confidence 34443333 3566789999988 888888655443
No 2
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.45 E-value=96 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHH-hCCCCCCC
Q 046369 149 YTGLLRQSLQKK-YHLKNAPC 168 (240)
Q Consensus 149 ~~~~~R~~IR~k-Y~I~Gs~~ 168 (240)
|.=.+...+|++ ||+.|.+.
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 455688999998 99999875
No 3
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.74 E-value=49 Score=19.02 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=18.2
Q ss_pred ccceecccCCCCCCCCCCCC-CCCCCCcC
Q 046369 38 LVVHRCCECGQPLPESYEPP-SDEDWTTG 65 (240)
Q Consensus 38 ~~~~~~~~~~qp~P~s~~~~-~~~~WstG 65 (240)
-.+..|..||+.+-....-. -+++|+.+
T Consensus 6 ~g~~~CagCg~eik~gQaL~ALdkqWH~~ 34 (36)
T d2dj7a2 6 RGPSHCAGCKEEIKHGQSLLALDKQWHVS 34 (36)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTT
T ss_pred cCCccccccchhhhCCceeeeeecceeee
Confidence 45678889988766443222 46788766
No 4
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=79 Score=18.23 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=11.3
Q ss_pred hhhHHHHhHHHHHhcc
Q 046369 178 HWCALCQEHREMKNHL 193 (240)
Q Consensus 178 ~~CaLcQe~REl~~R~ 193 (240)
..|.-||+.+|.+.|.
T Consensus 23 ~~Cv~Cq~~~E~~~r~ 38 (41)
T d1tjla2 23 DLCIDCKTLAEIREKQ 38 (41)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh
Confidence 4577888888876553
No 5
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.90 E-value=97 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.659 Sum_probs=11.5
Q ss_pred CCcccCcccceecccCCC
Q 046369 31 QPIQVPQLVVHRCCECGQ 48 (240)
Q Consensus 31 qpi~vP~~~~~~~~~~~q 48 (240)
..+.+-..++.+|.+||-
T Consensus 12 ~~~~l~~~d~irCreCG~ 29 (46)
T d1twfl_ 12 SKLSLSRTDAVRCKDCGH 29 (46)
T ss_dssp CEECCCTTSTTCCSSSCC
T ss_pred CceEeCCCCcEEeccCCc
Confidence 344444556778888876
No 6
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=5.80 E-value=1.1e+02 Score=18.59 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=8.6
Q ss_pred HHHHHhCCCC
Q 046369 156 SLQKKYHLKN 165 (240)
Q Consensus 156 ~IR~kY~I~G 165 (240)
+++.||||++
T Consensus 7 klqdrygire 16 (57)
T d2csba2 7 KLQDRYGIRE 16 (57)
T ss_dssp HHHHHHCCCH
T ss_pred ehhhhhccHH
Confidence 6889999985
No 7
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.12 E-value=1.9e+02 Score=16.36 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=21.8
Q ss_pred ceecccCCCCCCCCCCCCCCCCCCcCcccccCC
Q 046369 40 VHRCCECGQPLPESYEPPSDEDWTTGICGCFSD 72 (240)
Q Consensus 40 ~~~~~~~~qp~P~s~~~~~~~~WstGLfdC~~D 72 (240)
-..|.|||.+...||-- +.+....||=|.|
T Consensus 5 y~~C~eCg~~F~DSYL~---~~Fd~~vCD~CRD 34 (36)
T d1d4ua2 5 YVICEECGKEFMDSYLM---DHFDLPTCDDCRD 34 (36)
T ss_dssp CEECTTTCCEESCSSST---TTTSCCCCTTTCS
T ss_pred HHHHHHhCcHHHHHHHH---HcCCchhcccccC
Confidence 35789999999988863 6677777773333
No 8
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.85 E-value=2.3e+02 Score=17.56 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHhCCCCC
Q 046369 148 IYTGLLRQSLQKKYHLKNA 166 (240)
Q Consensus 148 i~~~~~R~~IR~kY~I~Gs 166 (240)
+....++.+|+++||++=+
T Consensus 39 l~a~el~~~i~~~~g~~l~ 57 (76)
T d2pnga1 39 LMGVEVRQILEREHDLVLP 57 (76)
T ss_dssp HHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 3456799999999998743
No 9
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.79 E-value=1.6e+02 Score=18.65 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHhCCCCC
Q 046369 150 TGLLRQSLQKKYHLKNA 166 (240)
Q Consensus 150 ~~~~R~~IR~kY~I~Gs 166 (240)
.+..-.+||+.|||+..
T Consensus 44 kgkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 44 RGRSPEEIRRTFNIVND 60 (70)
T ss_dssp TTCCHHHHHHHHTCCCC
T ss_pred ccCCHHHHHHHhCCCCC
Confidence 35677899999999964
No 10
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}
Probab=4.68 E-value=79 Score=21.51 Aligned_cols=16 Identities=38% Similarity=1.076 Sum_probs=12.0
Q ss_pred chhhhccchhhHHHHh
Q 046369 170 PCLVHCCLHWCALCQE 185 (240)
Q Consensus 170 Dc~~~~cC~~CaLcQe 185 (240)
-.++.+|..||..||.
T Consensus 25 ~vvl~F~a~wC~~C~~ 40 (143)
T d2fy6a1 25 PTLIKFWASWCPLCLS 40 (143)
T ss_dssp CEEEEEECTTCHHHHT
T ss_pred EEEEEEECCCCccccc
Confidence 3567778888888885
Done!