BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046370
MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQ
NYQEKEKLAHRY

High Scoring Gene Products

Symbol, full name Information P value
AT5G05370 protein from Arabidopsis thaliana 4.5e-27
AT3G10860 protein from Arabidopsis thaliana 2.2e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046370
        (72 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153574 - symbol:AT5G05370 species:3702 "Arabi...   304  4.5e-27   1
TAIR|locus:2103217 - symbol:AT3G10860 species:3702 "Arabi...   288  2.2e-25   1


>TAIR|locus:2153574 [details] [associations]
            symbol:AT5G05370 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008121
            "ubiquinol-cytochrome-c reductase activity" evidence=ISS]
            [GO:0005750 "mitochondrial respiratory chain complex III"
            evidence=IDA] InterPro:IPR004205 EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AB010692 GO:GO:0005750 GO:GO:0008121
            Gene3D:1.20.5.210 UniGene:At.33005 UniGene:At.67825 EMBL:BT010476
            IPI:IPI00522934 RefSeq:NP_196156.1 UniGene:At.339
            ProteinModelPortal:Q9FLB7 SMR:Q9FLB7 STRING:Q9FLB7 PaxDb:Q9FLB7
            DNASU:830419 EnsemblPlants:AT5G05370.1 GeneID:830419
            KEGG:ath:AT5G05370 TAIR:At5g05370 eggNOG:NOG311866
            HOGENOM:HOG000005723 InParanoid:Q9FLB7 OMA:GTYTYVQ PhylomeDB:Q9FLB7
            ProtClustDB:CLSN2684040 Genevestigator:Q9FLB7 InterPro:IPR020101
            Pfam:PF10890 ProDom:PD056240 Uniprot:Q9FLB7
        Length = 72

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/72 (76%), Positives = 65/72 (90%)

Query:     1 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQ 60
             MGKQPV++KAVVYALSPFQQKIM GLWKDL  KIHHKVS+NWISTILL+ P+VGTY+Y Q
Sbjct:     1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query:    61 NYQEKEKLAHRY 72
              ++E+EKL HR+
Sbjct:    61 YFKEQEKLEHRF 72


>TAIR|locus:2103217 [details] [associations]
            symbol:AT3G10860 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0008121
            "ubiquinol-cytochrome-c reductase activity" evidence=ISS]
            [GO:0016020 "membrane" evidence=IDA] [GO:0005750 "mitochondrial
            respiratory chain complex III" evidence=IDA] [GO:0009853
            "photorespiration" evidence=RCA] InterPro:IPR004205 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC011708 GO:GO:0005750 GO:GO:0008121
            Gene3D:1.20.5.210 eggNOG:NOG311866 HOGENOM:HOG000005723
            ProtClustDB:CLSN2684040 InterPro:IPR020101 Pfam:PF10890
            ProDom:PD056240 EMBL:AY086370 EMBL:BT000474 EMBL:BT006507
            IPI:IPI00548163 RefSeq:NP_187697.1 UniGene:At.28217
            ProteinModelPortal:Q9SG91 SMR:Q9SG91 IntAct:Q9SG91 STRING:Q9SG91
            PaxDb:Q9SG91 PRIDE:Q9SG91 DNASU:820256 EnsemblPlants:AT3G10860.1
            GeneID:820256 KEGG:ath:AT3G10860 TAIR:At3g10860 InParanoid:Q9SG91
            OMA:TYWYAQY PhylomeDB:Q9SG91 ArrayExpress:Q9SG91
            Genevestigator:Q9SG91 Uniprot:Q9SG91
        Length = 72

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query:     1 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQ 60
             MGKQPV++KAVVYALSPFQQKIM GLWKDL  KIHHKVS+NWIS  LL+ P+VGTY Y Q
Sbjct:     1 MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query:    61 NYQEKEKLAHRY 72
              ++E+EKL HR+
Sbjct:    61 YFKEQEKLEHRF 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  11 22  0.49    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  105 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.61u 0.18s 8.79t   Elapsed:  00:00:01
  Total cpu time:  8.61u 0.18s 8.79t   Elapsed:  00:00:01
  Start:  Sat May 11 08:49:39 2013   End:  Sat May 11 08:49:40 2013

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