BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046370
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|G Chain G, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|T Chain T, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|G Chain G, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|T Chain T, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|G Chain G, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|T Chain T, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|G Chain G, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|T Chain T, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|G Chain G, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|T Chain T, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|G Chain G, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|T Chain T, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|G Chain G, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|T Chain T, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|G Chain G, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|T Chain T, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|G Chain G, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|T Chain T, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|G Chain G, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|T Chain T, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|G Chain G, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L74|T Chain T, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L75|G Chain G, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3L75|T Chain T, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3TGU|G Chain G, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
pdb|3TGU|T Chain T, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
Length = 81
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 11 VVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTY-AYVQNYQEKEKLA 69
+ Y+LSPF+Q+ +P ++ D + + S + P +G Y Y QE E+L
Sbjct: 14 ITYSLSPFEQRAIPNIFSDALPNVWRRFSS---QVFKVAPPFLGAYLLYSWGTQEFERLK 70
Query: 70 HR 71
+
Sbjct: 71 RK 72
>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
Length = 306
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 13 YALSPFQQKIMPGLWKD 29
+++SPF +K MPG WK+
Sbjct: 261 HSISPFMRKGMPGDWKN 277
>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
In Complex With Pap
Length = 305
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 13 YALSPFQQKIMPGLWKD 29
+++SPF +K MPG WK+
Sbjct: 260 HSISPFMRKGMPGDWKN 276
>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae
Length = 574
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 8 MKAVVYALSPFQQKIMPGLWKDLTGK 33
+ AV+ + F ++++ G WK TGK
Sbjct: 145 VNAVLAKMKAFSERVIGGEWKGFTGK 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,325,745
Number of Sequences: 62578
Number of extensions: 75409
Number of successful extensions: 240
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)