BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046370
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P46269|QCR8_SOLTU Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2
          Length = 72

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 67/72 (93%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQ 60
          MGKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 NYQEKEKLAHRY 72
          ++ EKEKL HRY
Sbjct: 61 HFLEKEKLEHRY 72


>sp|Q54V76|QCR8_DICDI Probable cytochrome b-c1 complex subunit 8 OS=Dictyostelium
          discoideum GN=DDB_G0280569 PE=3 SV=1
          Length = 73

 Score = 33.5 bits (75), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 9  KAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKL 68
          K + Y++SPFQQK+    +K+    +   V DN+  ++     L  T  +       E  
Sbjct: 10 KQITYSVSPFQQKLFVNYFKNAIPHLRRGVKDNFFCSVPYFAALYITVNWANETYHNEMK 69

Query: 69 AHRY 72
           H Y
Sbjct: 70 DHWY 73


>sp|P50523|QCR8_SCHPO Cytochrome b-c1 complex subunit 8 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=qcr8 PE=3 SV=1
          Length = 92

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  PVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQE 64
          P +   + Y+LSPFQQ+ M G +K  T  +  +V    +   +  G  +  Y Y    + 
Sbjct: 20 PKQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFG--IAYYIYCWGKER 77

Query: 65 KEKLAHRY 72
           E L  ++
Sbjct: 78 NEFLNSKH 85


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,733,473
Number of Sequences: 539616
Number of extensions: 905750
Number of successful extensions: 1888
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1884
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)