Query 046370
Match_columns 72
No_of_seqs 86 out of 88
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_G Ubiquinol-cytochrome C 99.8 2.9E-21 1E-25 121.7 1.2 52 7-61 9-61 (81)
2 3tgu_G UQCRQ, mitochondrial ub 99.8 8.9E-21 3E-25 119.6 1.9 57 2-62 5-62 (81)
3 3cx5_H Cytochrome B-C1 complex 99.8 1.1E-20 3.7E-25 122.0 0.7 54 7-63 19-76 (93)
4 3u5e_B 60S ribosomal protein L 25.3 49 0.0017 25.5 2.8 39 4-42 82-122 (387)
5 3iz5_C 60S ribosomal protein L 25.0 52 0.0018 25.4 2.9 40 4-43 82-123 (389)
6 4a17_B RPL3, ribosomal protein 24.7 50 0.0017 25.4 2.8 39 4-42 82-122 (391)
7 3izc_k 60S ribosomal protein R 21.3 18 0.00061 23.1 -0.2 15 14-29 49-63 (100)
8 1kn7_A RCK4, voltage-gated pot 17.4 53 0.0018 20.0 1.3 17 54-70 20-38 (78)
9 4a18_Q RPL36, 60S ribosomal pr 16.7 20 0.00068 23.0 -0.8 16 14-30 50-65 (104)
10 3sl9_C B-cell CLL/lymphoma 9 p 14.2 45 0.0015 19.1 0.4 7 65-71 12-18 (55)
No 1
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=99.81 E-value=2.9e-21 Score=121.65 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=45.8
Q ss_pred eeee-EEEEeCccccccccccccchhhhhhhhhhccccceeeeecceeeehhhHHH
Q 046370 7 RMKA-VVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQN 61 (72)
Q Consensus 7 rlr~-VtYsLSPfEQra~~g~f~~~p~~i~RR~~en~~~~~~~v~Pfv~~y~y~~~ 61 (72)
|+|+ |||||||||||+|+|+|+++++|++||++++| +++++|||++|...++
T Consensus 9 k~~givtYslSP~~Qr~~~g~~~~~i~n~~RR~~~~~---l~v~pPfv~~Y~i~~W 61 (81)
T 1pp9_G 9 RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACI---LRVAPPFVAFYLVYTW 61 (81)
T ss_dssp CCEEEEEEEECTTTBCSSTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeChhhcccccchHhhhhhHHHHHHHhcc---eeeehhHHHHHHHHHH
Confidence 8899 99999999999999999999999999999988 5667799988754443
No 2
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=99.80 E-value=8.9e-21 Score=119.62 Aligned_cols=57 Identities=25% Similarity=0.544 Sum_probs=47.3
Q ss_pred CCcceeeee-EEEEeCccccccccccccchhhhhhhhhhccccceeeeecceeeehhhHHHH
Q 046370 2 GKQPVRMKA-VVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNY 62 (72)
Q Consensus 2 gk~~vrlr~-VtYsLSPfEQra~~g~f~~~p~~i~RR~~en~~~~~~~v~Pfv~~y~y~~~~ 62 (72)
|... |+|+ |||||||||||+|+|+|+++++|++||++++| +.+++||+++|..-++-
T Consensus 5 G~L~-k~kgIitYsLSP~~Qr~~ag~~~~~i~N~~RR~~~q~---l~v~pPfi~~Y~i~~Wa 62 (81)
T 3tgu_G 5 GNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQV---FKVAPPFLGAYLLYSWG 62 (81)
T ss_dssp TTSC-CCEEEEEEEECTTTBCSSCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cccc-cccceEEEEeCcccccccccchhhhhhHHHHHHHHhh---hHhhHHHHHHHHHHHHH
Confidence 4445 8999 99999999999999999999999999999955 55566999877544443
No 3
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=99.79 E-value=1.1e-20 Score=121.97 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=46.3
Q ss_pred eeee-EEEEeCccccccccccccchhhhhhhhhhccccceeeeecceeeehh---hHHHHH
Q 046370 7 RMKA-VVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYA---YVQNYQ 63 (72)
Q Consensus 7 rlr~-VtYsLSPfEQra~~g~f~~~p~~i~RR~~en~~~~~~~v~Pfv~~y~---y~~~~~ 63 (72)
|+|+ |||||||||||+|+|+|+|+++|++||++++| +++++|||++|. ||+++-
T Consensus 19 k~~givtYsLSP~~Qr~~~G~~~~~i~N~~RR~~~q~---l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 19 KQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQF---LYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp CCCSEEEEEECGGGBCCSCCSTTTTSSSCSHHHHTTH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeCccccccccchHhhcchHHHHHHHhcc---eEEechHhHHHHHHHHHHHHH
Confidence 6888 99999999999999999999999999999987 566779988764 555443
No 4
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=25.25 E-value=49 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.572 Sum_probs=33.6
Q ss_pred cceeeee-EEEEeCcccccccccccc-chhhhhhhhhhccc
Q 046370 4 QPVRMKA-VVYALSPFQQKIMPGLWK-DLTGKIHHKVSDNW 42 (72)
Q Consensus 4 ~~vrlr~-VtYsLSPfEQra~~g~f~-~~p~~i~RR~~en~ 42 (72)
.|+.+=+ +-|.-.|.-.+++.-.|. ++...+.|||..||
T Consensus 82 PPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw 122 (387)
T 3u5e_B 82 PPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNW 122 (387)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCT
T ss_pred CCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhccc
Confidence 4677777 889999999999999999 78888888887777
No 5
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=24.96 E-value=52 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.578 Sum_probs=34.3
Q ss_pred cceeeee-EEEEeCcccccccccccc-chhhhhhhhhhcccc
Q 046370 4 QPVRMKA-VVYALSPFQQKIMPGLWK-DLTGKIHHKVSDNWI 43 (72)
Q Consensus 4 ~~vrlr~-VtYsLSPfEQra~~g~f~-~~p~~i~RR~~en~~ 43 (72)
.|+.+=+ +-|.-.|.-.+++.-.|. ++...+.|||..||.
T Consensus 82 PPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~ 123 (389)
T 3iz5_C 82 PPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWC 123 (389)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTC
T ss_pred CCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchh
Confidence 4677777 889999999999999999 788888888977884
No 6
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=24.74 E-value=50 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.512 Sum_probs=33.9
Q ss_pred cceeeee-EEEEeCcccccccccccc-chhhhhhhhhhccc
Q 046370 4 QPVRMKA-VVYALSPFQQKIMPGLWK-DLTGKIHHKVSDNW 42 (72)
Q Consensus 4 ~~vrlr~-VtYsLSPfEQra~~g~f~-~~p~~i~RR~~en~ 42 (72)
.|+.+=+ +-|.-.|.-.+++.-.|. ++...+.|||-.||
T Consensus 82 PPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw 122 (391)
T 4a17_B 82 PPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNW 122 (391)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCS
T ss_pred CCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccc
Confidence 4677777 889999999999999999 78888888897788
No 7
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=21.27 E-value=18 Score=23.12 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=11.5
Q ss_pred EeCccccccccccccc
Q 046370 14 ALSPFQQKIMPGLWKD 29 (72)
Q Consensus 14 sLSPfEQra~~g~f~~ 29 (72)
.++|||.++| .+++.
T Consensus 49 GfaPYErr~m-ELLkv 63 (100)
T 3izc_k 49 GLSPYERRLI-DLIRN 63 (100)
T ss_dssp HHTTSCCHHH-HHHHH
T ss_pred cCchhHHHHH-HHHHh
Confidence 5799999998 55653
No 8
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=17.42 E-value=53 Score=19.97 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=12.3
Q ss_pred eehhhHH--HHHHHHHhhh
Q 046370 54 GTYAYVQ--NYQEKEKLAH 70 (72)
Q Consensus 54 ~~y~y~~--~~~e~ekl~h 70 (72)
+-|+||. .-+|+|+|.|
T Consensus 20 ~pygya~qararerer~ah 38 (78)
T 1kn7_A 20 MPYGYAAQARARERERLAH 38 (78)
T ss_dssp CCCSGGGGHHHHHHGGGTT
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 4588883 4578888887
No 9
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=16.73 E-value=20 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.2
Q ss_pred EeCccccccccccccch
Q 046370 14 ALSPFQQKIMPGLWKDL 30 (72)
Q Consensus 14 sLSPfEQra~~g~f~~~ 30 (72)
.++|||.++| .+++.+
T Consensus 50 GfaPYErR~m-ELLKvs 65 (104)
T 4a18_Q 50 GFAPYEKRII-ELIKAG 65 (104)
T ss_dssp CCCHHHHHHH-HHHHHC
T ss_pred cCchhHHHHH-HHHHcc
Confidence 5899999999 556633
No 10
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=14.23 E-value=45 Score=19.06 Aligned_cols=7 Identities=57% Similarity=1.013 Sum_probs=5.2
Q ss_pred HHHhhhc
Q 046370 65 KEKLAHR 71 (72)
Q Consensus 65 ~ekl~hr 71 (72)
||.|+||
T Consensus 12 ~eqlehr 18 (55)
T 3sl9_C 12 QEQLEHR 18 (55)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6778876
Done!