Query 046372
Match_columns 266
No_of_seqs 150 out of 527
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.9 7.5E-23 2.6E-27 151.8 3.3 68 22-95 10-77 (80)
2 2dmt_A Homeobox protein BARH-l 99.9 2.2E-22 7.6E-27 150.6 4.4 67 23-95 11-77 (80)
3 2dms_A Homeobox protein OTX2; 99.8 6.3E-22 2.1E-26 147.9 4.7 66 27-98 5-70 (80)
4 2cra_A Homeobox protein HOX-B1 99.8 4.3E-22 1.5E-26 145.4 2.7 64 26-95 4-67 (70)
5 2dmu_A Homeobox protein goosec 99.8 8.3E-22 2.8E-26 143.7 4.2 63 27-95 5-67 (70)
6 2kt0_A Nanog, homeobox protein 99.8 6.8E-22 2.3E-26 148.3 3.7 67 23-95 16-82 (84)
7 1wh5_A ZF-HD homeobox family p 99.8 6.3E-22 2.2E-26 149.8 3.3 64 25-92 13-78 (80)
8 2cue_A Paired box protein PAX6 99.8 1.3E-21 4.6E-26 146.4 5.0 65 28-98 6-70 (80)
9 2da1_A Alpha-fetoprotein enhan 99.8 4.8E-22 1.6E-26 144.7 2.5 66 25-96 3-68 (70)
10 2da2_A Alpha-fetoprotein enhan 99.8 5.5E-22 1.9E-26 144.3 2.8 65 26-96 4-68 (70)
11 2dmq_A LIM/homeobox protein LH 99.8 1.8E-21 6.3E-26 144.8 5.1 65 27-97 5-69 (80)
12 2da4_A Hypothetical protein DK 99.8 1E-21 3.4E-26 146.8 3.4 67 24-96 3-73 (80)
13 1wh7_A ZF-HD homeobox family p 99.8 8.6E-22 2.9E-26 149.6 3.0 63 23-92 11-78 (80)
14 2djn_A Homeobox protein DLX-5; 99.8 9.8E-22 3.3E-26 143.6 2.5 63 27-95 5-67 (70)
15 2e1o_A Homeobox protein PRH; D 99.8 2.4E-21 8.3E-26 141.5 4.1 62 28-95 6-67 (70)
16 1puf_A HOX-1.7, homeobox prote 99.8 4.3E-21 1.5E-25 142.7 5.5 68 24-97 8-75 (77)
17 1nk2_P Homeobox protein VND; h 99.8 3.6E-21 1.2E-25 143.1 4.9 68 24-97 4-71 (77)
18 2vi6_A Homeobox protein nanog; 99.8 1.3E-21 4.6E-26 139.6 2.2 61 28-94 2-62 (62)
19 1zq3_P PRD-4, homeotic bicoid 99.8 5.2E-21 1.8E-25 139.3 5.1 64 28-97 1-64 (68)
20 2l7z_A Homeobox protein HOX-A1 99.8 4.1E-21 1.4E-25 141.8 4.4 66 26-97 4-69 (73)
21 1fjl_A Paired protein; DNA-bin 99.8 3.7E-21 1.3E-25 144.0 4.2 68 23-96 12-79 (81)
22 1yz8_P Pituitary homeobox 2; D 99.8 1.7E-21 5.9E-26 141.6 2.0 65 28-98 2-66 (68)
23 2hdd_A Protein (engrailed home 99.8 2.9E-21 1E-25 137.4 2.7 59 29-93 3-61 (61)
24 2h1k_A IPF-1, pancreatic and d 99.8 4.1E-21 1.4E-25 137.7 3.4 61 28-94 2-62 (63)
25 1ig7_A Homeotic protein MSX-1; 99.8 5.2E-21 1.8E-25 134.4 3.4 57 30-92 1-57 (58)
26 1bw5_A ISL-1HD, insulin gene e 99.8 2.9E-21 9.9E-26 139.4 2.0 63 28-96 2-64 (66)
27 2cuf_A FLJ21616 protein; homeo 99.8 7.4E-21 2.5E-25 146.6 3.9 71 25-97 3-84 (95)
28 2k40_A Homeobox expressed in E 99.8 8.4E-21 2.9E-25 137.3 3.9 62 30-97 2-63 (67)
29 2r5y_A Homeotic protein sex co 99.8 6.3E-21 2.1E-25 145.0 3.2 64 26-95 25-88 (88)
30 1jgg_A Segmentation protein EV 99.8 7.2E-21 2.5E-25 135.0 3.2 58 30-93 2-59 (60)
31 1ahd_P Antennapedia protein mu 99.8 5.2E-21 1.8E-25 139.5 2.5 63 29-97 2-64 (68)
32 1ftt_A TTF-1 HD, thyroid trans 99.8 9E-21 3.1E-25 138.0 3.5 63 29-97 2-64 (68)
33 2m0c_A Homeobox protein arista 99.8 9.8E-21 3.4E-25 138.5 3.6 65 27-97 7-71 (75)
34 3a01_A Homeodomain-containing 99.8 1.6E-20 5.6E-25 144.9 4.6 68 24-97 12-79 (93)
35 1b8i_A Ultrabithorax, protein 99.8 1.2E-20 4.3E-25 141.9 3.6 62 28-95 19-80 (81)
36 2dn0_A Zinc fingers and homeob 99.8 1E-20 3.5E-25 140.3 2.7 64 28-97 7-70 (76)
37 3a02_A Homeobox protein arista 99.8 9.6E-21 3.3E-25 134.4 2.3 58 32-95 2-59 (60)
38 2da5_A Zinc fingers and homeob 99.8 2.3E-20 7.7E-25 138.7 4.3 62 30-97 8-69 (75)
39 1uhs_A HOP, homeodomain only p 99.8 3.5E-20 1.2E-24 136.0 5.1 63 30-97 2-64 (72)
40 1b72_A Protein (homeobox prote 99.8 2.4E-20 8.1E-25 144.3 4.1 64 27-96 32-95 (97)
41 2hi3_A Homeodomain-only protei 99.8 3.2E-20 1.1E-24 136.7 4.5 63 30-97 3-65 (73)
42 3rkq_A Homeobox protein NKX-2. 99.8 3.2E-20 1.1E-24 129.3 3.8 57 29-91 2-58 (58)
43 2dmp_A Zinc fingers and homeob 99.8 8.1E-20 2.8E-24 140.2 5.8 69 24-98 8-76 (89)
44 2da6_A Hepatocyte nuclear fact 99.8 7.3E-20 2.5E-24 146.4 5.6 69 28-98 5-90 (102)
45 1akh_A Protein (mating-type pr 99.8 4E-20 1.4E-24 131.0 1.8 58 28-91 4-61 (61)
46 2ly9_A Zinc fingers and homeob 99.8 7.5E-20 2.6E-24 134.3 3.3 63 28-96 5-67 (74)
47 1puf_B PRE-B-cell leukemia tra 99.8 1.3E-19 4.3E-24 133.0 4.4 63 29-97 1-66 (73)
48 3nar_A ZHX1, zinc fingers and 99.8 5.8E-20 2E-24 142.1 2.6 65 24-94 20-84 (96)
49 3a03_A T-cell leukemia homeobo 99.8 7.1E-20 2.4E-24 128.8 2.8 54 34-93 2-55 (56)
50 1x2n_A Homeobox protein pknox1 99.8 1.3E-19 4.3E-24 133.0 4.2 65 27-95 5-70 (73)
51 1b72_B Protein (PBX1); homeodo 99.8 2.2E-19 7.5E-24 135.4 4.3 63 29-97 1-66 (87)
52 1du6_A PBX1, homeobox protein 99.8 1.3E-19 4.3E-24 129.8 1.6 59 28-92 2-63 (64)
53 1lfb_A Liver transcription fac 99.8 1.3E-19 4.6E-24 142.9 1.6 69 27-97 7-92 (99)
54 2ecc_A Homeobox and leucine zi 99.7 2.7E-19 9.1E-24 136.3 3.1 59 31-95 5-63 (76)
55 2dmn_A Homeobox protein TGIF2L 99.7 8.7E-19 3E-23 132.7 5.1 66 28-97 6-72 (83)
56 1k61_A Mating-type protein alp 99.7 4.8E-19 1.7E-23 125.3 2.9 58 32-93 1-59 (60)
57 1e3o_C Octamer-binding transcr 99.7 4.2E-19 1.4E-23 148.6 2.4 62 26-93 98-159 (160)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 4E-19 1.4E-23 147.2 2.2 64 25-94 83-146 (146)
59 2xsd_C POU domain, class 3, tr 99.7 5E-19 1.7E-23 149.5 1.6 67 24-96 94-160 (164)
60 3d1n_I POU domain, class 6, tr 99.7 1.2E-18 4E-23 144.2 3.7 61 26-92 90-150 (151)
61 1mnm_C Protein (MAT alpha-2 tr 99.7 1.3E-18 4.3E-23 132.0 3.4 60 27-92 25-87 (87)
62 2ecb_A Zinc fingers and homeob 99.7 2.2E-18 7.6E-23 134.0 3.7 57 35-97 17-73 (89)
63 2e19_A Transcription factor 8; 99.7 1.6E-18 5.3E-23 126.4 2.4 55 32-92 6-60 (64)
64 1le8_B Mating-type protein alp 99.7 2.1E-18 7E-23 130.3 2.8 59 30-94 3-64 (83)
65 1wi3_A DNA-binding protein SAT 99.7 2.4E-18 8.2E-23 130.4 2.8 59 28-91 6-64 (71)
66 2cqx_A LAG1 longevity assuranc 99.7 8E-19 2.7E-23 130.4 0.0 58 31-94 10-68 (72)
67 2l9r_A Homeobox protein NKX-3. 99.7 3.2E-18 1.1E-22 127.2 1.2 57 34-96 9-65 (69)
68 3l1p_A POU domain, class 5, tr 99.7 7.7E-18 2.6E-22 140.5 3.2 61 27-93 94-154 (155)
69 2d5v_A Hepatocyte nuclear fact 99.7 4.6E-18 1.6E-22 141.6 1.6 64 27-96 95-158 (164)
70 3nau_A Zinc fingers and homeob 99.7 1.6E-17 5.3E-22 124.2 2.3 51 37-93 12-62 (66)
71 1x2m_A LAG1 longevity assuranc 99.6 2.1E-17 7.3E-22 122.1 1.8 50 38-92 9-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 4.3E-16 1.5E-20 113.9 2.5 58 35-96 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.4E-16 4.6E-21 138.9 -1.1 65 27-93 113-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.5 7.7E-15 2.6E-19 130.8 1.9 65 25-91 138-219 (221)
75 2da7_A Zinc finger homeobox pr 99.4 3.4E-14 1.2E-18 107.7 1.7 48 37-90 13-60 (71)
76 1mh3_A Maltose binding-A1 home 99.4 3.7E-14 1.3E-18 126.8 0.6 56 30-91 366-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 5.1E-13 1.8E-17 104.5 3.1 61 33-97 9-70 (89)
78 2nzz_A Penetratin conjugated G 98.8 8.1E-10 2.8E-14 74.3 2.0 22 77-98 1-22 (37)
79 2ys9_A Homeobox and leucine zi 71.9 0.89 3E-05 34.2 0.3 39 40-84 17-55 (70)
80 2rgt_A Fusion of LIM/homeobox 69.8 0.059 2E-06 44.1 -7.2 30 27-58 134-163 (169)
81 2eqr_A N-COR1, N-COR, nuclear 69.4 2.2 7.7E-05 30.0 1.9 49 30-87 9-58 (61)
82 1p4w_A RCSB; solution structur 59.4 5 0.00017 30.5 2.3 46 30-87 29-74 (99)
83 1hlv_A CENP-B, major centromer 58.4 7 0.00024 29.6 3.0 52 31-91 3-54 (131)
84 2glo_A Brinker CG9653-PA; prot 57.0 3.9 0.00013 27.7 1.2 46 32-84 2-47 (59)
85 3c57_A Two component transcrip 55.6 2.4 8.4E-05 31.4 -0.0 41 35-87 27-67 (95)
86 3hug_A RNA polymerase sigma fa 54.7 5.8 0.0002 28.7 1.9 47 35-92 37-83 (92)
87 2elh_A CG11849-PA, LD40883P; s 53.8 19 0.00065 26.0 4.6 43 30-83 17-59 (87)
88 1fi6_A EH domain protein REPS1 53.6 5.4 0.00019 28.6 1.6 46 34-83 1-49 (92)
89 1je8_A Nitrate/nitrite respons 53.0 2.2 7.5E-05 30.8 -0.6 45 34-90 20-64 (82)
90 1jko_C HIN recombinase, DNA-in 52.5 3.2 0.00011 25.8 0.2 43 35-88 5-47 (52)
91 3i5g_B Myosin regulatory light 51.2 31 0.0011 26.7 5.8 39 31-69 5-46 (153)
92 1fse_A GERE; helix-turn-helix 50.4 3.2 0.00011 28.2 -0.1 47 32-90 8-54 (74)
93 2lv7_A Calcium-binding protein 48.6 15 0.00052 27.2 3.4 52 31-84 25-79 (100)
94 1c07_A Protein (epidermal grow 48.0 5.3 0.00018 29.0 0.8 46 34-83 2-50 (95)
95 2o8x_A Probable RNA polymerase 46.9 7.6 0.00026 25.9 1.4 40 35-85 15-54 (70)
96 1tc3_C Protein (TC3 transposas 44.9 9.1 0.00031 23.1 1.4 40 35-85 5-44 (51)
97 3mzy_A RNA polymerase sigma-H 42.5 10 0.00036 28.4 1.7 46 35-92 109-154 (164)
98 1wj7_A Hypothetical protein (R 41.3 49 0.0017 26.4 5.4 51 23-79 7-57 (104)
99 1x3u_A Transcriptional regulat 40.9 2.9 0.0001 28.9 -1.5 40 36-87 17-56 (79)
100 2lhi_A Calmodulin, serine/thre 39.0 9.9 0.00034 30.3 1.1 37 33-69 2-41 (176)
101 2rnj_A Response regulator prot 38.7 6 0.00021 28.7 -0.2 43 34-88 28-70 (91)
102 3lph_A Protein REV; helix-loop 37.3 14 0.00047 28.0 1.6 37 41-97 18-54 (72)
103 3j04_B Myosin regulatory light 35.3 34 0.0012 24.7 3.5 48 36-85 1-51 (143)
104 1s7o_A Hypothetical UPF0122 pr 34.5 19 0.00063 27.9 2.0 47 35-92 22-68 (113)
105 2jn6_A Protein CGL2762, transp 34.2 14 0.00046 26.8 1.1 43 33-84 3-45 (97)
106 2p7v_B Sigma-70, RNA polymeras 33.4 8.9 0.00031 26.2 0.0 39 35-84 5-47 (68)
107 3iz6_M 40S ribosomal protein S 33.4 33 0.0011 28.8 3.5 31 54-87 57-87 (152)
108 2yum_A ZZZ3 protein, zinc fing 32.6 34 0.0012 24.3 3.0 53 29-88 4-60 (75)
109 1pdn_C Protein (PRD paired); p 31.0 35 0.0012 24.6 2.9 47 34-85 74-126 (128)
110 3fia_A Intersectin-1; EH 1 dom 30.7 24 0.00081 28.2 2.1 47 32-82 23-72 (121)
111 3clo_A Transcriptional regulat 30.4 10 0.00035 32.3 -0.2 46 34-91 196-241 (258)
112 3fwb_A Cell division control p 30.4 32 0.0011 25.2 2.6 39 30-68 11-52 (161)
113 1or7_A Sigma-24, RNA polymeras 30.3 20 0.0007 27.9 1.6 46 36-92 141-186 (194)
114 1xsv_A Hypothetical UPF0122 pr 30.1 21 0.00072 27.4 1.7 47 35-92 25-71 (113)
115 3ulq_B Transcriptional regulat 29.9 14 0.00049 27.3 0.6 40 32-83 26-65 (90)
116 1eh2_A EPS15; calcium binding, 29.5 33 0.0011 25.8 2.7 47 32-82 5-53 (106)
117 3i5g_C Myosin catalytic light 29.1 19 0.00066 28.1 1.3 34 35-68 2-40 (159)
118 2q0o_A Probable transcriptiona 28.9 16 0.00054 30.6 0.8 46 33-90 173-218 (236)
119 1j7q_A CAVP, calcium vector pr 28.8 30 0.001 23.4 2.1 37 32-68 4-43 (86)
120 2mys_C Myosin; muscle protein, 28.0 39 0.0013 24.3 2.7 46 36-83 2-50 (149)
121 1ku3_A Sigma factor SIGA; heli 27.9 28 0.00097 23.9 1.9 49 35-90 10-58 (73)
122 3u5c_S 40S ribosomal protein S 27.3 46 0.0016 27.7 3.3 32 53-87 58-89 (146)
123 2opo_A Polcalcin CHE A 3; calc 27.2 11 0.00039 25.5 -0.3 46 35-83 4-52 (86)
124 1l3l_A Transcriptional activat 27.1 19 0.00064 30.0 0.9 46 32-89 170-215 (234)
125 2pmy_A RAS and EF-hand domain- 27.0 13 0.00043 26.2 -0.1 56 24-83 9-67 (91)
126 1rp3_A RNA polymerase sigma fa 26.9 26 0.00089 28.0 1.7 46 36-92 188-233 (239)
127 3o48_A Mitochondria fission 1 26.1 76 0.0026 26.1 4.4 36 34-69 16-51 (134)
128 2ovk_B RLC, myosin regulatory 25.2 28 0.00096 25.7 1.5 38 31-68 5-45 (153)
129 2cqq_A RSGI RUH-037, DNAJ homo 24.9 58 0.002 23.7 3.2 39 34-80 9-49 (72)
130 2kgr_A Intersectin-1; structur 24.3 35 0.0012 25.5 1.9 49 31-83 3-54 (111)
131 1tty_A Sigma-A, RNA polymerase 23.5 30 0.001 24.8 1.3 43 35-84 18-60 (87)
132 1avs_A Troponin C; muscle cont 22.8 33 0.0011 23.5 1.4 47 35-83 13-62 (90)
133 1wdc_B Scallop myosin; calcium 22.6 66 0.0023 23.7 3.2 49 34-84 10-61 (156)
134 1iuf_A Centromere ABP1 protein 22.5 67 0.0023 25.3 3.4 50 29-85 5-59 (144)
135 2x48_A CAG38821; archeal virus 21.9 12 0.00041 24.3 -1.0 40 34-84 12-53 (55)
136 2q1z_A RPOE, ECF SIGE; ECF sig 21.8 14 0.00047 28.8 -0.9 24 64-91 157-180 (184)
137 1y8m_A FIS1; mitochondria, unk 21.1 1.4E+02 0.0049 24.7 5.2 36 34-69 15-50 (144)
138 1l0o_C Sigma factor; bergerat 21.0 20 0.0007 28.5 0.0 43 36-89 199-241 (243)
139 2rn7_A IS629 ORFA; helix, all 21.0 34 0.0012 25.1 1.2 46 33-83 4-51 (108)
140 2jnf_A Troponin C; stretch act 21.0 40 0.0014 24.7 1.7 35 34-68 5-43 (158)
141 1iq3_A Ralbp1-interacting prot 20.9 14 0.00048 28.0 -0.9 50 30-83 10-62 (110)
142 3qp6_A CVIR transcriptional re 20.6 39 0.0013 29.2 1.7 46 32-89 194-239 (265)
143 1k78_A Paired box protein PAX5 20.3 94 0.0032 23.7 3.7 49 33-86 88-142 (149)
144 2joj_A Centrin protein; N-term 20.3 28 0.00095 22.8 0.6 33 36-68 1-36 (77)
145 1u78_A TC3 transposase, transp 20.1 42 0.0015 24.9 1.6 41 34-85 5-45 (141)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=7.5e-23 Score=151.76 Aligned_cols=68 Identities=31% Similarity=0.413 Sum_probs=61.8
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 22 GNNCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 22 ~g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
++....+++|.||.||.+||.+||..|.. ++||+.++|++||.+| +|++++|+|||||||+|+||++.
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~--~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLEILYQKYLL--DSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHHHHHHHHHH--CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 35567788999999999999999999984 6999999999999999 69999999999999999998654
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=150.61 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=61.3
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 23 NNCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 23 g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
+....+.+|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||..+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFE--KQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 556677889999999999999999998 47999999999999999 79999999999999999998654
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=6.3e-22 Score=147.89 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhcc
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIEG 98 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~~ 98 (266)
.+.+|.|+.||.+||.+||..|. .++||+..+|++||..| +|++++|+|||||||+|+|++.+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFA--KTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 47788999999999999999998 47999999999999999 69999999999999999999877653
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=4.3e-22 Score=145.44 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=58.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
..+.+|+|+.||++|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||.+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYA--ANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 346788999999999999999998 47999999999999999 79999999999999999998654
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.3e-22 Score=143.68 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
...+|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQ--ETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 35678999999999999999998 47999999999999999 69999999999999999998764
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=6.8e-22 Score=148.34 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=61.5
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 23 NNCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 23 g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
+....+.+|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||+++
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQ--RQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHH--HSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 556678889999999999999999998 47999999999999999 69999999999999999998765
No 7
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=6.3e-22 Score=149.76 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=57.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 25 CHCRPTCPRWTPTTDQIRILKELYYNNG--VRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 25 ~~~R~rR~Rt~FT~eQL~iLE~~F~~~~--n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
...+++|.||.||.+||.+||..|+... ++||+..+|++||..| +|++++|+|||||||||.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 3456788999999999999999998311 6899999999999999 79999999999999999875
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.3e-21 Score=146.36 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=60.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhcc
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIEG 98 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~~ 98 (266)
+.+|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||+++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFE--RTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 5678999999999999999997 57999999999999999 69999999999999999999887763
No 9
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-22 Score=144.66 Aligned_cols=66 Identities=27% Similarity=0.400 Sum_probs=59.8
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 25 CHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 25 ~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
...+++|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+||+.+.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFD--INNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHH--HCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhccc
Confidence 3347788999999999999999998 47999999999999999 799999999999999999987653
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-22 Score=144.34 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=58.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
..+.+|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+||+.+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFD--ANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH--cCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcccc
Confidence 346778999999999999999998 47999999999999999 799999999999999999986643
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=144.82 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
.+++|.|+.||.+|+.+||..|. .++||+.++|.+||.+| +|++.+|+|||||||+|+||+.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFA--INHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHH
Confidence 36788999999999999999998 47999999999999999 7999999999999999999987655
No 12
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1e-21 Score=146.78 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCC----CCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGV----RSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n----~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
+...+++|.||.||.+||.+||..|. .+ +||+.++|++||.+| +|++++|+|||||||+|+|+....
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWD--NGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHT--TTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH--hCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 34457889999999999999999997 57 999999999999999 699999999999999999986543
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=8.6e-22 Score=149.65 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=57.2
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHhhCC-----CCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 23 NNCHCRPTCPRWTPTTDQIRILKELYYNNG-----VRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 23 g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~-----n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
++...+++|.||.||.+||.+|| .|. . ++||+..+|++||.+| +|++++|+|||||||+|.|+
T Consensus 11 ~~~~~~~rR~Rt~ft~~Ql~~Le-~F~--~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 11 SSSGGTTKRFRTKFTAEQKEKML-AFA--ERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCSSCCCCCCCHHHHHHHH-HHH--HHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCCccCCHHHHHHHH-HHH--HHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 44556778999999999999999 797 4 7899999999999999 79999999999999999975
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.8e-22 Score=143.57 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
.+.+|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQ--KTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHc--CCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 36678999999999999999997 57999999999999999 69999999999999999987653
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=2.4e-21 Score=141.48 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
+.+|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+|+.++
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFE--TQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH--cCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 5667899999999999999998 47999999999999999 69999999999999999998765
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.83 E-value=4.3e-21 Score=142.68 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=61.4
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
....+.+|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|+|||||||+|+|+..+..
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFL--FNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 44456788999999999999999998 47999999999999999 6999999999999999999987654
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=3.6e-21 Score=143.09 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=61.5
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+...+++|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFR--QQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHh--hcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 34456788999999999999999998 47999999999999999 6999999999999999999887765
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=1.3e-21 Score=139.62 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
+++|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQ--KQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 5678999999999999999998 47999999999999999 6999999999999999999863
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=5.2e-21 Score=139.26 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+++|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++.+..
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFL--QGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCcCHHHHHHHHHHHh--cCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhccc
Confidence 3678999999999999999997 57999999999999999 6999999999999999999987665
No 20
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.82 E-value=4.1e-21 Score=141.76 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=60.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
..+.+|.|+.||++|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYA--TNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHH--HTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHh--hCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 456788999999999999999998 47999999999999999 6999999999999999999876554
No 21
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.82 E-value=3.7e-21 Score=143.99 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 23 NNCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 23 g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
.....+.+|.|+.||.+|+.+||..|.. ++||+..+|.+||..| +|++++|++||||||+|+||+.+.
T Consensus 12 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 12 IALKRKQRRSRTTFSASQLDELERAFER--TQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp -----CCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhccc
Confidence 3445677899999999999999999984 7999999999999999 699999999999999999987753
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.82 E-value=1.7e-21 Score=141.56 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=60.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhcc
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIEG 98 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~~ 98 (266)
+++|.|+.||++|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+|++.+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQ--RNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHT--TCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhccC
Confidence 5678999999999999999997 58999999999999999 69999999999999999999887663
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.82 E-value=2.9e-21 Score=137.45 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 29 PTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
++|+|+.||.+|+.+||..|. .++||+..+|.+||..| ||++.+|++||||||+|+||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFN--ENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHH--ccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhccccccC
Confidence 578999999999999999998 47999999999999999 699999999999999999873
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.82 E-value=4.1e-21 Score=137.70 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
..+|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFL--FNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHh--cCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 3568999999999999999998 47999999999999999 6999999999999999999864
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=5.2e-21 Score=134.42 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
+|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFR--QKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHh--cCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 57899999999999999998 47999999999999999 69999999999999999987
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=2.9e-21 Score=139.39 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
+++|+|+.||++|+.+||..|.. ++||+..+|.+||..| ||++.+|++||||||+|+|++...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA--NPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhhh
Confidence 56789999999999999999984 7999999999999999 699999999999999999886543
No 27
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7.4e-21 Score=146.64 Aligned_cols=71 Identities=13% Similarity=0.320 Sum_probs=62.5
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh-----------hcCCCCCCceeeccccchhHHHHh
Q 046372 25 CHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLR-----------QYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 25 ~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~-----------~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
...+++|.|+.||++||.+||..|+. ++||+.++|++||..|+ .++.|++.+|++||||||+|+||+
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999984 79999999999999995 333399999999999999999988
Q ss_pred hhhc
Q 046372 94 KKIE 97 (266)
Q Consensus 94 kr~~ 97 (266)
.+..
T Consensus 81 ~~~~ 84 (95)
T 2cuf_A 81 ANIA 84 (95)
T ss_dssp HHCC
T ss_pred hhcc
Confidence 8764
No 28
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-21 Score=137.32 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+|+|+.||++|+.+||..|. .++||+.++|.+||..| +|++++|++||||||+|+|++.+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFR--VNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred cCCCCCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchhc
Confidence 67899999999999999997 58999999999999999 6999999999999999999887664
No 29
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.81 E-value=6.3e-21 Score=144.97 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=54.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
..+.+|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFH--FNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhcC
Confidence 446778999999999999999997 57999999999999999 69999999999999999998653
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=7.2e-21 Score=135.03 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
+|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFY--KENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 57899999999999999998 47999999999999999 699999999999999999985
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.81 E-value=5.2e-21 Score=139.50 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 29 PTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
++|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++.+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFH--FNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHH--HCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHc--cCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 467999999999999999998 47999999999999999 6999999999999999999877654
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=9e-21 Score=137.99 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 29 PTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
++|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+|++.+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFK--QQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHH--HSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHH--hCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467999999999999999998 47999999999999999 6999999999999999999987665
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=9.8e-21 Score=138.53 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
.+++|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++.+|+|||||||+|+||+.+..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQ--KTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 46788999999999999999998 47899999999999999 6999999999999999999987765
No 34
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=1.6e-20 Score=144.88 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=61.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
....+.+|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++.+..
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFH--KQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHH--cCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHH
Confidence 34456788999999999999999998 47999999999999999 6999999999999999999887654
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.80 E-value=1.2e-20 Score=141.85 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
..+|.|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||+.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFH--TNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHh--cCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 4577999999999999999998 47999999999999999 69999999999999999998754
No 36
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=140.33 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
.+.+.|+.||.+||.+||..|. .++||+..+|++||.+| +|++++|++||||||+|+||+++..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~--~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFC--RNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH--HSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHh--cCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhcccC
Confidence 4556799999999999999998 47999999999999999 7999999999999999999876554
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.80 E-value=9.6e-21 Score=134.38 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+||+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFS--RTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHH--cCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 689999999999999998 47999999999999999 69999999999999999998765
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-20 Score=138.65 Aligned_cols=62 Identities=13% Similarity=0.298 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+++|..||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFA--QNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCccCCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 35677899999999999998 47999999999999999 6999999999999999999877654
No 39
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=3.5e-20 Score=135.98 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
.+.|+.||.+|+.+||..|.. .++||+..+|.+||..| +|++++|++||||||+|+||+++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~-~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNK-VNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHS-SCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 358999999999999999972 27999999999999999 6999999999999999999987554
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-20 Score=144.27 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
..++|+|+.||.+||.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+|++.+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFH--FNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 46778999999999999999997 57999999999999999 699999999999999999998764
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=3.2e-20 Score=136.70 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
++.|+.||++|+.+||..|.+ .++||+..+|.+||..| +|++++|++||||||+|+||+++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~-~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNK-VNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHH-TTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 468999999999999999973 26899999999999999 6999999999999999999988654
No 42
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=3.2e-20 Score=129.33 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=53.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 29 PTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
++|.|+.||++|+.+||..|. .++||+..+|.+||..| +|++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~--~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFK--QQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 467899999999999999997 57999999999999999 6999999999999999986
No 43
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.1e-20 Score=140.21 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=58.3
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhcc
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIEG 98 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~~ 98 (266)
....-.++++..||.+||.+||..|.. ++||+..+|++||..| +|++++|+|||||||+|+|++++...
T Consensus 8 ~~p~~~p~k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 8 AYPDFAPQKFKEKTQGQVKILEDSFLK--SSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCSCCCSSCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred CCCCCCccccccCCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 333333445556999999999999984 7999999999999999 69999999999999999998776653
No 44
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=146.43 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=62.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhh-------------cC----CCCCCceeeccccchhHH
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQ-------------YG----KIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~-------------~g----~LsE~qVqvWFQNRRAKe 90 (266)
+.+|.|++||++||.+||+.|+ .++||+.++|++||+.|.. +| .|+|.+|+|||||||+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~--~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYD--RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 6788999999999999999998 5789999999999999943 23 799999999999999999
Q ss_pred HHhhhhcc
Q 046372 91 RLKKKIEG 98 (266)
Q Consensus 91 KRkkr~~~ 98 (266)
|++++...
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 99988874
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=4e-20 Score=131.05 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
+.+|.|+.||.+|+.+||..|.. ++||+.++|.+||..| +|++.+|++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~--~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR--KQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 56789999999999999999984 6999999999999999 6999999999999999986
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=7.5e-20 Score=134.31 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
.+++.|+.||++|+.+||..|.. ++||+..+|.+||..| +|++++|++||||||+|+||++..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK--NQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 45679999999999999999984 7999999999999999 799999999999999999987644
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.77 E-value=1.3e-19 Score=133.04 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 29 PTCPRWTPTTDQIRILKELY---YNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F---~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
++|+|+.||.+|+.+||..| . .++||+.++|.+||..| +|++.+|++||||||+|+|++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~--~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHL--SNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTT--TSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhc--cCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 46799999999999999999 5 57999999999999999 6999999999999999999876554
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.77 E-value=5.8e-20 Score=142.09 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=54.7
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
+...+.+|.|+.||.+|+.+||..|. .++||+..+|.+||.+| +|++++|++||||||+|+||.+
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFV--RTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 33445667899999999999999998 47999999999999999 7999999999999999999864
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=7.1e-20 Score=128.76 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
|.||++|+.+||..|. .++||+..+|.+||..| +|++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFL--RQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH--hcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 5799999999999998 47999999999999999 699999999999999999985
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-19 Score=133.05 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYN-NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~-~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
.+.+|.|+.||.+|+.+||..|.. ..++||+.++|++||..| +|++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhcccccc
Confidence 367789999999999999999963 137999999999999999 69999999999999999998653
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=2.2e-19 Score=135.43 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 29 PTCPRWTPTTDQIRILKELY---YNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F---~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
++|+|+.||.+|+.+||..| . .++||+.++|.+||..| +|++.+|++||||||+|+|++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~--~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHL--SNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTT--TSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccccc
Confidence 36799999999999999999 5 57999999999999999 6999999999999999999876554
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.3e-19 Score=129.82 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 28 RPTCPRWTPTTDQIRILKELY---YNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F---~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
..+|.|+.||.+|+.+||..| . .++||+.++|.+||..| +|++.+|++||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~--~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHL--SNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTT--TSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcc--cCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 356799999999999999999 5 57999999999999999 69999999999999999986
No 53
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.75 E-value=1.3e-19 Score=142.88 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhc--------------CC---CCCCceeeccccchhH
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQY--------------GK---IEGKNVFYWFQNYKAR 89 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~--------------g~---LsE~qVqvWFQNRRAK 89 (266)
.+.+|.||.||++||.+||..|+ .++||+..+|++||..+... .+ |++.+|+|||||||+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~--~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYE--RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35678999999999999999997 57999999999999994321 26 9999999999999999
Q ss_pred HHHhhhhc
Q 046372 90 ERLKKKIE 97 (266)
Q Consensus 90 eKRkkr~~ 97 (266)
+|++++..
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 98877655
No 54
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.7e-19 Score=136.31 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhh
Q 046372 31 CPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKK 95 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr 95 (266)
+.|.+||++||.+||+.|.. ++||+.++|++||..| +|+++||+|||||||+|+|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~--~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ--CQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHH
Confidence 36777999999999999984 7999999999999999 79999999999999999987643
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-19 Score=132.74 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 28 RPTCPRWTPTTDQIRILKELYYN-NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~-~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+.+++|+.||.+|+.+||..|.. ..++||+.++|++||..| +|+++||++||||||+|.|+.....
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 66789999999999999999963 126999999999999999 7999999999999999998765443
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.74 E-value=4.8e-19 Score=125.35 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 32 PRWTPTTDQIRILKELYYNN-GVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~-~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
+|+.||.+|+.+||..|..+ .++||+.++|.+||.+| ||++++|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 47889999999999999831 07999999999999999 799999999999999999863
No 57
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.73 E-value=4.2e-19 Score=148.57 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=53.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
..+++|+|+.||.+|+.+||..|.. ++||+..+|.+||..| +|++++|+|||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFME--NQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 4578899999999999999999984 7999999999999999 699999999999999999985
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=4e-19 Score=147.17 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=54.9
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 25 CHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 25 ~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
...+++|+|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFG--EHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHH--HcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhccC
Confidence 3456788999999999999999998 47999999999999999 6999999999999999999864
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.73 E-value=5e-19 Score=149.46 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
....+++|+|+.||.+|+.+||+.|. .++||+..+|.+||..| +|++++|+|||||||+|+||+++.
T Consensus 94 ~~~~~~rr~Rt~ft~~Ql~~LE~~F~--~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 94 AAQGRKRKKRTSIEVGVKGALESHFL--KCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ------------CCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccccCCCCceeccHHHHHHHHHHHh--cCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 34567788999999999999999998 47999999999999999 699999999999999999987653
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=144.21 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=56.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 26 HCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 26 ~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
..+++|+|+.||.+|+.+||..|.. ++||+..+|.+||.+| +|++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEK--NPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 3577889999999999999999984 7999999999999999 69999999999999999986
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.72 E-value=1.3e-18 Score=132.00 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC---CCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNG---VRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~---n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+++++|+.||.+|+.+||..|. . ++||+.++|.+||..| +|++++|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~--~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFA--KNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHH--HTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHH--HhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 45677899999999999999997 5 7999999999999999 79999999999999999973
No 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.2e-18 Score=134.05 Aligned_cols=57 Identities=23% Similarity=0.441 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
.||.+||.+||+.|. .++||+..+|.+||..| +|+++||+|||||||+|+|++++..
T Consensus 17 ~~t~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFL--NSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHH--HCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 789999999999998 47999999999999999 7999999999999999999866544
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-18 Score=126.44 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+..|+.+||.+||+.|. .++||+..+|.+||.+| +|++++|+|||||||||+++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~--~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYA--LNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHT--TCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHh--cCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 455678999999999997 58999999999999999 69999999999999999876
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=2.1e-18 Score=130.27 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCC---CCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 30 TCPRWTPTTDQIRILKELYYNNG---VRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~---n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
+++|+.||.+|+.+||..|. . ++||+.++|.+||..| ||++.||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~--~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFA--KNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHH--HTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHH--hhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 45677799999999999997 4 7999999999999999 7999999999999999998753
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.4e-18 Score=130.37 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 28 RPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 28 R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
+++|.||.||.+||.+|+..|+. -++||+.+.|++||++| ||++++|+|||||||.-.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~-~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD-VGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH-HCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 77889999999999999999983 27999999999999999 7999999999999997653
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=8e-19 Score=130.41 Aligned_cols=58 Identities=10% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhh
Q 046372 31 CPRWTPTTDQIRILKELY-YNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F-~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkk 94 (266)
+.|..+|.+|+.+||+.| . .++||+..+|.+||.+| +|+|++|+|||||||+|+|+..
T Consensus 10 k~r~r~~~~ql~~LE~~F~~--~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVS--VTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHH--TCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHh--cCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 345556889999999999 7 57999999999999999 6999999999999999998643
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-18 Score=127.24 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
...|++|+.+||+.|. .++||+..+|.+||..| +|++++|+|||||||+|+||+++.
T Consensus 9 ~~~t~~ql~~LE~~F~--~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFS--HQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHh--cCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 4679999999999998 47999999999999999 699999999999999999987643
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.68 E-value=7.7e-18 Score=140.45 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
.+++|.|+.||.+|+.+||..|. .++||+..+|.+||..| +|++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~--~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFL--KSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTT--TCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHc--cCCCCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 57788999999999999999997 57999999999999999 699999999999999999873
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.68 E-value=4.6e-18 Score=141.61 Aligned_cols=64 Identities=28% Similarity=0.275 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
.+++|+|+.||.+|+.+||..|.. ++||+.++|++||..| +|++++|+|||||||+|.|+....
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE--NKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCCC
Confidence 466889999999999999999984 6999999999999999 699999999999999999876543
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=124.15 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHh
Q 046372 37 TTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLK 93 (266)
Q Consensus 37 T~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRk 93 (266)
|.+||.+||+.|. .++||+..+|.+||..| +|++++|++||||||+|+|+-
T Consensus 12 ~~~Ql~~LE~~F~--~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFL--QSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHH--GGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--cCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhcc
Confidence 8999999999998 47999999999999999 799999999999999999964
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.1e-17 Score=122.09 Aligned_cols=50 Identities=16% Similarity=0.432 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 38 TDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 38 ~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
++|+.+||+.|.. .++||+..+|.+||.+| +|+|+||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~-~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTA-ITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHT-TCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHH-cCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 4589999999942 47999999999999999 79999999999999999985
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=4.3e-16 Score=113.89 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhh
Q 046372 35 TPTTDQIRILKELYYNN-GVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKI 96 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~-~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~ 96 (266)
.||++|+.+||..|..+ .++||+.++|.+||..| +|+++||++||||||+|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 68999999999999711 36999999999999999 699999999999999999876543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=1.4e-16 Score=138.91 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhh-------------cCC----CCCCceeeccccchhH
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQ-------------YGK----IEGKNVFYWFQNYKAR 89 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~-------------~g~----LsE~qVqvWFQNRRAK 89 (266)
.+.||.|++||+.|+.+||+.|.. ++||+..+|++||..|.. +|- |+|.+|++||||||+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~--~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH--HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 567899999999999999999984 799999999999999951 111 9999999999999999
Q ss_pred HHHh
Q 046372 90 ERLK 93 (266)
Q Consensus 90 eKRk 93 (266)
+|.+
T Consensus 191 ~k~~ 194 (194)
T 1ic8_A 191 EAFR 194 (194)
T ss_dssp CC--
T ss_pred hhcC
Confidence 8753
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.47 E-value=7.7e-15 Score=130.84 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=54.3
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhc-----------------CCCCCCceeeccccch
Q 046372 25 CHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQY-----------------GKIEGKNVFYWFQNYK 87 (266)
Q Consensus 25 ~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~-----------------g~LsE~qVqvWFQNRR 87 (266)
...++||.|++||++|+.+||+.|++ ++||+..+|++||+.|... ..|+|.+|++||||||
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~--~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 34677899999999999999999984 7999999999999998631 2489999999999999
Q ss_pred hHHH
Q 046372 88 ARER 91 (266)
Q Consensus 88 AKeK 91 (266)
+++.
T Consensus 216 ~~~~ 219 (221)
T 2h8r_A 216 KEEA 219 (221)
T ss_dssp TTCC
T ss_pred hhhh
Confidence 8753
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-14 Score=107.71 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHH
Q 046372 37 TTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 37 T~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKe 90 (266)
=++|+.+||..|. .+++|+.++|++||..| +|++++|+|||||||++.
T Consensus 13 ~k~ql~~Lk~yF~--~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 13 YKDHMSVLKAYYA--MNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp STHHHHHHHHHHH--HCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhccccc
Confidence 5799999999998 58999999999999999 699999999999999844
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.39 E-value=3.7e-14 Score=126.82 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
++.|..|+.+|+.+||+.|. .++||+..+|++||.+| +|+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~--~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFR--RKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHH--HCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHh--cCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 45678899999999999998 47999999999999999 6999999999999999976
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=5.1e-13 Score=104.55 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 33 RWTPTTDQIRILKELYYN-NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 33 Rt~FT~eQL~iLE~~F~~-~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
-.-|+++++.+|+.-|.. ..++||+.++|++||.++ +|+++||++||||||+|.|+.....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 456899999999999963 237999999999999999 7999999999999999999765444
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.84 E-value=8.1e-10 Score=74.26 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.6
Q ss_pred CceeeccccchhHHHHhhhhcc
Q 046372 77 KNVFYWFQNYKARERLKKKIEG 98 (266)
Q Consensus 77 ~qVqvWFQNRRAKeKRkkr~~~ 98 (266)
+||+|||||||||+||+++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999888753
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.92 E-value=0.89 Score=34.25 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 40 QIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 40 QL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
=.++|+++|.. .+.+..+....|..+- +|+-.+|+-||-
T Consensus 17 ~~e~L~~Yy~~--hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAA--HQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHH--TCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred cchHHHHHHHH--hcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 35789999984 5688888888888887 699999999994
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=69.81 E-value=0.059 Score=44.09 Aligned_cols=30 Identities=0% Similarity=-0.309 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCH
Q 046372 27 CRPTCPRWTPTTDQIRILKELYYNNGVRSPTA 58 (266)
Q Consensus 27 ~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~ 58 (266)
...+|+|+.||.+||++|+..|+ .++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~--~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQ--ANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCC--CCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHh--CCCCccc
Confidence 45678999999999999999997 5788853
No 81
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.40 E-value=2.2 Score=29.95 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=33.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCc-eeeccccch
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKN-VFYWFQNYK 87 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~q-VqvWFQNRR 87 (266)
++..-.+|++..+++++.|.. ||.. =..||..|. +-+..+ |..|+.++|
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~----~gk~--w~~Ia~~l~---~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQ----HPKN--FGLIASYLE---RKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHH----STTC--HHHHHHHCT---TSCHHHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHH----hCCC--HHHHHHHcC---CCCHHHHHHHHHHhcC
Confidence 345566799999999999973 6643 345887774 334444 567776655
No 82
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=59.38 E-value=5 Score=30.52 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccch
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYK 87 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRR 87 (266)
..+.-.+|+.|.++|.-+++ + +.. ++||+.| +|++..|+.+..+=+
T Consensus 29 ~~~~~~Lt~re~~Vl~l~~~--G--~s~----~EIA~~L----~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 29 GYGDKRLSPKESEVLRLFAE--G--FLV----TEIAKKL----NRSIKTISSQKKSAM 74 (99)
T ss_dssp CCSSSSCCHHHHHHHHHHHH--T--CCH----HHHHHHH----TSCHHHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHc--C--CCH----HHHHHHH----CcCHHHHHHHHHHHH
Confidence 33456799999999998764 3 222 5799999 699999997765433
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=58.36 E-value=7 Score=29.57 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 31 CPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
++|..+|.++...+-..+.. ...+.. .+||+.| ||+...|..|..+++....
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~--~g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE--NPDLRK---GEIARRF----NIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH--CTTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH--CCCCcH---HHHHHHh----CCCHHHHHHHHhchhhhcc
Confidence 36788999998776666632 234443 2589998 6999999999887766443
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.00 E-value=3.9 Score=27.67 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
+|..||+|....+..++.. + .+......+||+++ +|+...|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~-g--~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN-D--NDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C--TTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHc-C--CCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 3557899998777666642 2 22011134789999 699999999964
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.59 E-value=2.4 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccch
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYK 87 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRR 87 (266)
.+|+.|.++|.-+++ + +. ..+||+.| +|++..|+.+..+=|
T Consensus 27 ~Lt~~e~~vl~l~~~--g--~s----~~eIA~~l----~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--G--LT----NKQIADRM----FLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHHHT--T--CC----HHHHHHHH----TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--C--CC----HHHHHHHH----CcCHHHHHHHHHHHH
Confidence 489999999998764 3 22 24799999 699999987654333
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.75 E-value=5.8 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+++.|..+|.-.|.. + +. ..+||+.| +|++..|+.+...=|.|.|+
T Consensus 37 ~L~~~~r~vl~l~~~~-g--~s----~~eIA~~l----gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR-G--WS----TAQIATDL----GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTS-C--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3688899999876642 2 32 24789999 69999999877655555444
No 87
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.81 E-value=19 Score=26.03 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 30 TCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
++.|..||.++...+-+.+.. + . + ..+||++| +|+...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g--~-s---~~~iA~~~----gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-G--E-S---KASVARDI----GVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-T--C-C---HHHHHHHH----TCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-C--C-C---HHHHHHHH----CcCHHHHHHHH
Confidence 456778899996555455542 2 2 2 34789999 69999999996
No 88
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=53.60 E-value=5.4 Score=28.65 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 34 WTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
|.+|++|+..|++.|.. .++.+.+.++...+-..+ ++++..|...|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 78999999999999963 123456666555555544 47766655443
No 89
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=53.02 E-value=2.2 Score=30.82 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHH
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKe 90 (266)
..+|+.|.++|.-+++ + +. ..+||+.| +|++..|+.+..+=+.|.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g--~s----~~eIA~~l----~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G--LP----NKMIARRL----DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHc--C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 3589999999998653 3 32 24789999 699999987665433333
No 90
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=52.48 E-value=3.2 Score=25.83 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchh
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKA 88 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRA 88 (266)
.++++++..+..++. .+ .+ ..+||+.| +|+...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~-~g---~s---~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KG---HP---RQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHH-TT---CC---HHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHH-cC---CC---HHHHHHHH----CCCHHHHHHHHHHccc
Confidence 457777776666765 22 22 34689888 6999999999975544
No 91
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.21 E-value=31 Score=26.73 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHh
Q 046372 31 CPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLR 69 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~ 69 (266)
.+|..+|++|++.|.+.|.. .++.+.+..+...+-+.|+
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 35677999999999999963 3456788877666666653
No 92
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.43 E-value=3.2 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHH
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKe 90 (266)
.-..+|+.|..+|..++. + + + ..+||+.| ++++..|+.+...=+.|.
T Consensus 8 ~~~~L~~~e~~il~~~~~--g--~-s---~~eIA~~l----~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--D--K-T---TKEIASEL----FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--T--C-C---HHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc--C--C-C---HHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 345689999999998643 3 3 2 24789999 699999988776544443
No 93
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.65 E-value=15 Score=27.18 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 31 CPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
+....+|.+|+..|.+.|.. .++.+.+.++...+.+.|+. .+++..|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY--MPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTC--CCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC--CCCHHHHHHHHH
Confidence 45567899999999999963 34568888887777777742 477777776653
No 94
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=47.98 E-value=5.3 Score=28.95 Aligned_cols=46 Identities=7% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 34 WTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
|.+|++|+..|++.|.. .++.+.+.++...+-..+ ++++..|..+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHH
Confidence 77899999999999953 344566776554444443 47766665444
No 95
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.93 E-value=7.6 Score=25.94 Aligned_cols=40 Identities=18% Similarity=-0.046 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeecccc
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQN 85 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQN 85 (266)
.+++.|..+|...|.. + ++ ..+||..| ++++..|+.+...
T Consensus 15 ~L~~~~r~il~l~~~~-g--~s----~~eIA~~l----gis~~tv~~~~~r 54 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL-G--LS----YADAAAVC----GCPVGTIRSRVAR 54 (70)
T ss_dssp SSCHHHHHHHHHHHTS-C--CC----HHHHHHHH----TSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHc-C--CC----HHHHHHHH----CcCHHHHHHHHHH
Confidence 3689999999987642 2 32 24789999 6999999987643
No 96
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.94 E-value=9.1 Score=23.10 Aligned_cols=40 Identities=5% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeecccc
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQN 85 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQN 85 (266)
.+++++...+-.++.. + . + ..+||+.| +|+...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g--~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-N--V-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-T--C-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-C--C-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 4678777555556642 3 2 2 34789999 6999999998743
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.52 E-value=10 Score=28.43 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+++.|..+|. .|.. + +. .++||+.| ||++..|+.+.+.=|.|.|+
T Consensus 109 ~L~~~~r~v~~-~~~~-g--~s----~~EIA~~l----gis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-G--YS----YREIATIL----SKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTT-T--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-C--CC----HHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 46788888888 5531 2 32 24789999 69999998877544444443
No 98
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.29 E-value=49 Score=26.37 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=32.1
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCce
Q 046372 23 NNCHCRPTCPRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNV 79 (266)
Q Consensus 23 g~~~~R~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qV 79 (266)
++-...+...+...|.|||++=+.++. . ..|..++. | .+|...+|+++..+
T Consensus 7 ~~~~~~~~~~~~~aTaeQ~rLAq~i~~--~-~d~d~eek--V-k~L~EmtG~seeeA 57 (104)
T 1wj7_A 7 GNQNQTQHKQRPQATAEQIRLAQMISD--H-NDADFEEK--V-KQLIDITGKNQDEC 57 (104)
T ss_dssp CSCCCCTTCCSSSSSHHHHHHHHHHHH--S-CCHHHHHH--H-HHHHHHTCCCHHHH
T ss_pred CCCccCccccccccCHHHHHHHHHHhc--C-CcccHHHH--H-HHHHHhhCCCHHHH
Confidence 455556777888999999999999874 2 23443222 2 33333346776654
No 99
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.87 E-value=2.9 Score=28.93 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccch
Q 046372 36 PTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYK 87 (266)
Q Consensus 36 FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRR 87 (266)
+|+.|..+|.-.+. + +.. .+||+.| ++++..|+.+...=+
T Consensus 17 L~~~e~~vl~l~~~--g--~s~----~eIA~~l----~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G--LPN----KSIAYDL----DISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHHTT--T--CCH----HHHHHHT----TSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--C--CCH----HHHHHHH----CcCHHHHHHHHHHHH
Confidence 68899999987543 3 322 3789999 699999987665433
No 100
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.97 E-value=9.9 Score=30.25 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHh
Q 046372 33 RWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLR 69 (266)
Q Consensus 33 Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~ 69 (266)
+..+|++|++.|++.|.. .++.+.+.++-..+-..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 467899999999999962 2455778877666666663
No 101
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.71 E-value=6 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchh
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKA 88 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRA 88 (266)
..+|+.|..+|.-+++ + +... +||+.| +|++..|+.+..+=|.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g--~s~~----eIA~~l----~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--G--YSNQ----EIASAS----HITIKTVKTHVSNILS 70 (91)
T ss_dssp GGCCSHHHHHHHHHHT--T--CCTT----HHHHHH----TCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHc--C--CCHH----HHHHHH----CcCHHHHHHHHHHHHH
Confidence 3579999999998653 3 3332 699999 6999999976654333
No 102
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=37.35 E-value=14 Score=27.99 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHHhhhhc
Q 046372 41 IRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKKKIE 97 (266)
Q Consensus 41 L~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKRkkr~~ 97 (266)
+++++-+|+ .|+||+++-.. =|. -|||-|||+++++.
T Consensus 18 vRiIkiLyQ--SNP~P~p~GTr-qaR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQ--SNPPPNPEGTR-QAR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHH--TCCCCCCCSCH-HHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--cCCCCCCCCch-HHH-----------------HHHHHHHHHHHHHH
Confidence 456777776 58999875321 121 27888998888776
No 103
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=35.30 E-value=34 Score=24.72 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhC---CCCCCCHHHHHHHHHHHhhcCCCCCCceeecccc
Q 046372 36 PTTDQIRILKELYYNN---GVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQN 85 (266)
Q Consensus 36 FT~eQL~iLE~~F~~~---~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQN 85 (266)
||++|++.|++.|..- ++.+.+.++-..+...|+. .+++..|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 6899999999999632 2456777766555555531 3455556555543
No 104
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.48 E-value=19 Score=27.87 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+++.|..+|.-.|.. + +.. .+||+.| ++++..|+.|...=|.|.|+
T Consensus 22 ~L~~~~r~vl~l~y~~-g--~s~----~EIA~~l----giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD-D--YSL----AEIADEF----GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT-C--CCH----HHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--CCH----HHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 4789999999988652 3 332 4689999 69999999988765555544
No 105
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.19 E-value=14 Score=26.84 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 33 RWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 33 Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
|..||+++....-+.+... ... ...+||+.+ ||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~-~g~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS-DGA----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG-GGS----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCC----hHHHHHHHH----CcCHHHHHHHHH
Confidence 4568999886655555311 011 245789999 699999999964
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.42 E-value=8.9 Score=26.16 Aligned_cols=39 Identities=8% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHH----hhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 35 TPTTDQIRILKELY----YNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 35 ~FT~eQL~iLE~~F----~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
.+++.|..+|...| .. + . + -.+||+.| +|++..|+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g--~-s---~~eIA~~l----gis~~tV~~~~~ 47 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-D--Y-T---LEEVGKQF----DVTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-C--C-C---HHHHHHHH----TCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-C--C-C---HHHHHHHH----CcCHHHHHHHHH
Confidence 47899999999888 21 1 2 2 24789999 699999987654
No 107
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.42 E-value=33 Score=28.80 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCceeeccccch
Q 046372 54 RSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYK 87 (266)
Q Consensus 54 ~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRR 87 (266)
..++.++...|...|. +...-.|..||=|||
T Consensus 57 g~Lt~~ei~~l~~~i~---~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVH---NPRQFKVPDWFLNRK 87 (152)
T ss_dssp TTSCHHHHHHHHHHHH---SCSSCCCCCCSCSCC
T ss_pred CcCCHHHHHHHHHHHH---hhcccCcchhhhhhh
Confidence 4567778888888875 222345778999997
No 108
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.56 E-value=34 Score=24.26 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHhhcCCCCCCceeeccccchh
Q 046372 29 PTCPRWTPTTDQIRILKELYYNNGVRSPT----AEQIQKISARLRQYGKIEGKNVFYWFQNYKA 88 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F~~~~n~yPs----~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRA 88 (266)
+...|-.+|+|+-.+|++.... |+. ...=..||+.|. +=+.+||+.-++|.-.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~---~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG---NRTAKQVASQVQKYFI 60 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS---SSCHHHHHHHHHHHHG
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 3445566799999999999863 543 355678999995 5677788755555443
No 109
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=30.98 E-value=35 Score=24.59 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcC------CCCCCceeecccc
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYG------KIEGKNVFYWFQN 85 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g------~LsE~qVqvWFQN 85 (266)
..+++++...|.+... .++..+.. +|+..|...+ .++...|..|...
T Consensus 74 ~~l~~~~~~~i~~~~~--~~~~~s~~---~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKR--SSPGMFSW---EIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTT--TCTTCCHH---HHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHH--hCcchHHH---HHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3578888888887764 33445543 5677775442 2466778777653
No 110
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.67 E-value=24 Score=28.23 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCC--CCCCCHHHHHHHHHHHhhcCCCCCCcee-ec
Q 046372 32 PRWTPTTDQIRILKELYYNNG--VRSPTAEQIQKISARLRQYGKIEGKNVF-YW 82 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~--n~yPs~e~R~eIA~~L~~~g~LsE~qVq-vW 82 (266)
..|..|++++..++++|..-. +.+.+.++ +..-|.+ .+|++..+. +|
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~e---lr~~~~~-sgLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQ---ARNFFFQ-SGLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHH---HHHHHGG-GCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHH---HHHHHHH-cCCCHHHHHHHH
Confidence 579999999999999997432 22334443 3444432 257766654 56
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.41 E-value=10 Score=32.35 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
-.+++.|..+|.-.++ + +.. ++||+.| +|++..|++..++=|.|.|
T Consensus 196 ~~L~~~erevl~L~~~--G--~s~----~EIA~~L----~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIRK--G--LSS----KEIAATL----YISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHHT--T--CCH----HHHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHc--C--CCH----HHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 4689999999998764 3 332 4799999 6999999976654444443
No 112
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=30.36 E-value=32 Score=25.24 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=27.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHH
Q 046372 30 TCPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L 68 (266)
...+..+|++|+..|+++|.. .++.+.+.++...+...|
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 52 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKAL 52 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc
Confidence 346678999999999999963 234566777665555555
No 113
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.29 E-value=20 Score=27.93 Aligned_cols=46 Identities=11% Similarity=-0.059 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 36 PTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 36 FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
+++.|..+|.-.|.. + ++. ++||+.| ||++..|+.+...=|.|.|+
T Consensus 141 L~~~~r~vl~l~~~~-g--~s~----~EIA~~l----gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELD-G--LSY----EEIAAIM----DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTT-C--CCH----HHHHHHT----TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc-C--CCH----HHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 466777777766531 2 322 3689999 69999999887655544443
No 114
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.13 E-value=21 Score=27.36 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
.+++.|..+|.-.|.. + +.. .+||+.| ++++..|+.+...=|.|.|+
T Consensus 25 ~L~~~~r~vl~l~~~~-g--~s~----~EIA~~l----giS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE-D--YSL----SEIADTF----NVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTS-C--CCH----HHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--CCH----HHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3689999999987642 2 332 4689999 69999999887655555544
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.93 E-value=14 Score=27.25 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
....+|+.|+++|.-+.. + +. ..+||+.| +|+++.|+...
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G--~s----~~eIA~~L----~iS~~TV~~~~ 65 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--G--FT----NQEIADAL----HLSKRSIEYSL 65 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--T--CC----HHHHHHHH----TCCHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc--C--CC----HHHHHHHH----CcCHHHHHHHH
Confidence 455689999999998774 3 32 34799999 69999998544
No 116
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=29.53 E-value=33 Score=25.85 Aligned_cols=47 Identities=4% Similarity=0.029 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHhhC--CCCCCCHHHHHHHHHHHhhcCCCCCCceeec
Q 046372 32 PRWTPTTDQIRILKELYYNN--GVRSPTAEQIQKISARLRQYGKIEGKNVFYW 82 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~--~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvW 82 (266)
..|.+|++++..|++.|..- ++.+.+.++...+-..+ +|++..|...
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~----gl~~~el~~i 53 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNS----KLPVDILGRV 53 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTT----TCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHc----CCCHHHHHHH
Confidence 46899999999999999631 23456665444443333 4776666533
No 117
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.13 E-value=19 Score=28.13 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHhh-----CCCCCCCHHHHHHHHHHH
Q 046372 35 TPTTDQIRILKELYYN-----NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~-----~~n~yPs~e~R~eIA~~L 68 (266)
-+|++|++.|+++|.. .+.-+.+..+...+-+.|
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~l 40 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCL 40 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHc
Confidence 4799999999999852 234567766555555555
No 118
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.90 E-value=16 Score=30.56 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHH
Q 046372 33 RWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 33 Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKe 90 (266)
...+|+.|+++|.-..+ + +.. ++||+.| +|+++.|+....|=|.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g--~s~----~eIa~~l----~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G--KTA----SVTANLT----GINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T--CCH----HHHHHHH----CCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--C--CCH----HHHHHHH----CcCHHHHHHHHHHHHHHh
Confidence 45689999999987653 3 322 4799999 699999997766544433
No 119
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=28.82 E-value=30 Score=23.43 Aligned_cols=37 Identities=5% Similarity=0.034 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHH
Q 046372 32 PRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L 68 (266)
....+|++|+..|+..|.. .++.+.+..+...+...|
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 43 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKL 43 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3456789999999999952 345677877766666665
No 120
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=28.00 E-value=39 Score=24.30 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 36 PTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 36 FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
+|++|++.|+++|.. .++.+.+..+...+...|+. .+++..|...|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ--NPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 789999999999953 23456677666555555531 34445555444
No 121
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.91 E-value=28 Score=23.89 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHH
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARE 90 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKe 90 (266)
.+++.|..+|...|...+..-.+. .+||..| +|++..|+.+...=+.|.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~---~eIA~~l----~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTL---EEVGAYF----GVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCH---HHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCH---HHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 478999999999883100011222 4789999 699999998764333333
No 122
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=27.29 E-value=46 Score=27.71 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCceeeccccch
Q 046372 53 VRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYK 87 (266)
Q Consensus 53 n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRR 87 (266)
...++.++...|...|. +...-.|-.||=|||
T Consensus 58 ~g~Lt~~ei~~l~~~i~---~~~~~~iP~w~lNR~ 89 (146)
T 3u5c_S 58 AGELTQEELERIVQIMQ---NPTHYKIPAWFLNRQ 89 (146)
T ss_dssp SSSCCHHHHHHHHHHHT---CTTTTTCCSTTCTBC
T ss_pred eccCCHHHHHHHHHHHH---hhcccCccHHHhhhh
Confidence 34577888888888884 222344678999996
No 123
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=27.20 E-value=11 Score=25.52 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 35 TPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
.+|++++..|+..|.. .++.+.+.++...+...| +.+++..|..+|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~---g~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTL---GSVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTT---TTCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHc---CCCCHHHHHHHH
Confidence 5799999999999953 234456665554444433 345555555444
No 124
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=27.10 E-value=19 Score=30.05 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhH
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKAR 89 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAK 89 (266)
+...+|+.|+++|.-..+ + +. -++||+.| +|++..|++..+|=|.|
T Consensus 170 ~~~~Lt~~e~~vl~~~~~--g--~s----~~eIa~~l----~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAV--G--KT----MEEIADVE----GVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCCHHHHHHHHHHTT--T--CC----HHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc--C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 445699999999987643 3 32 24789999 69999998766544433
No 125
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.99 E-value=13 Score=26.20 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=30.6
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 24 NCHCRPTCPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 24 ~~~~R~rR~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
+..+++...-..++.+++..|+..|.. .++.+.+.++...+...| ++++..|..+|
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~~~~~~~~~~ 67 (91)
T 2pmy_A 9 SGRENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVF 67 (91)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT----TCCHHHHHHHH
T ss_pred CCCccHHHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc----CcCHHHHHHHH
Confidence 444455555567899999999999953 234567776665555554 36666555444
No 126
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.94 E-value=26 Score=28.02 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhHHHH
Q 046372 36 PTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERL 92 (266)
Q Consensus 36 FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAKeKR 92 (266)
+++.|..+|.-.|.. + ++ .++||+.| ||++..|+.+...=|.|.|+
T Consensus 188 L~~~~r~vl~l~~~~-g--~s----~~EIA~~l----gis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYE-E--LP----AKEVAKIL----ETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTS-C--CC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-C--CC----HHHHHHHh----CCCHHHHHHHHHHHHHHHHH
Confidence 577788888877641 2 32 23689999 69999999877654444443
No 127
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.11 E-value=76 Score=26.07 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLR 69 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~ 69 (266)
..++++||.+||+.|.+.....|+++.+=+.|-.|-
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv 51 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLI 51 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 457999999999999875368999999988887773
No 128
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=25.21 E-value=28 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHH
Q 046372 31 CPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L 68 (266)
..++.+|++|++.|++.|.. .++.+.+.++...+...|
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 45 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL 45 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTT
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHh
Confidence 45778999999999999963 234567776554443333
No 129
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.88 E-value=58 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCC--CHHHHHHHHHHHhhcCCCCCCcee
Q 046372 34 WTPTTDQIRILKELYYNNGVRSP--TAEQIQKISARLRQYGKIEGKNVF 80 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yP--s~e~R~eIA~~L~~~g~LsE~qVq 80 (266)
..+|.++.++||+... .|| ++.+=+.||+.|+ =+..+|+
T Consensus 9 ~~WT~eE~k~fe~al~----~~p~~t~~RW~~IA~~lg----Rt~~eV~ 49 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMV----KFPGGTPGRWEKIAHELG----RSVTDVT 49 (72)
T ss_dssp CCCCHHHHHHHHHHHH----HSCTTCTTHHHHHHHHHT----SCHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HCCCCCCcHHHHHHHHhC----CCHHHHH
Confidence 3469999999999986 366 2455667999983 3666665
No 130
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=24.31 E-value=35 Score=25.45 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 31 CPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 31 R~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
-.-|.+|++++..|+++|.. .++.+.+.++. ...|. ..++++..|..+|
T Consensus 3 ~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El---~~~l~-~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 3 VAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQA---RTILM-QSSLPQAQLASIW 54 (111)
T ss_dssp SCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHH---HHHHH-TTCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHH---HHHHH-hCCCCHHHHHHHH
Confidence 46799999999999999963 12334555544 44443 1246665555443
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.50 E-value=30 Score=24.81 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 35 TPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
.+++.|..+|...|.-.+..-.+. .+||..| +|++..|+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~---~EIA~~l----gis~~tV~~~~~ 60 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTL---EEVGQYF----NVTRERIRQIEV 60 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCH---HHHHHHH----TCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCH---HHHHHHH----CCCHHHHHHHHH
Confidence 368899999998883100011222 4689999 699999997654
No 132
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=22.78 E-value=33 Score=23.50 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 35 TPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 35 ~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
.+|++++..|...|.. .++.+.+.++...+...|+ ..+++..|..+|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~l~ 62 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--QNPTKEELDAII 62 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT--CCCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 4799999999999953 3345677776666655553 134555555444
No 133
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.59 E-value=66 Score=23.66 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 34 WTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
..+|++|+..|++.|.. .++.+.+.++...+...|+ ..+++..|...|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~ 61 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLG--RAPDDKELTAMLK 61 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHS--SCCCHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHH
Confidence 46899999999999953 3456778877766666663 1355566666664
No 134
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=22.50 E-value=67 Score=25.25 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhCCCCCCCHHHHHHHHH----HHhhcCCCCCCceeecccc
Q 046372 29 PTCPRWTPTTDQIRILKELY-YNNGVRSPTAEQIQKISA----RLRQYGKIEGKNVFYWFQN 85 (266)
Q Consensus 29 ~rR~Rt~FT~eQL~iLE~~F-~~~~n~yPs~e~R~eIA~----~L~~~g~LsE~qVqvWFQN 85 (266)
++++|..+|-+|...|=+.+ + .++-.+.. +||. +.+. +|+...|..|..|
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~--~~~~~~q~---~la~wa~~~f~~--~is~stis~ilk~ 59 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQ--LQNRSGQQ---DLIEWFREKFGK--DISQPSVSQILSS 59 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHS--SSSCCCHH---HHHHHHHHHHSS--CCSSSSTTHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHH--hCCCCCHH---HHHHHHHHHHCC--CCcHHHHHHHHhh
Confidence 36789999999999888888 4 23444443 5677 4421 5888899988755
No 135
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.91 E-value=12 Score=24.27 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=28.5
Q ss_pred CCCC--HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccc
Q 046372 34 WTPT--TDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQ 84 (266)
Q Consensus 34 t~FT--~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQ 84 (266)
+.++ +++...+..++.. + . + ..+||+.| +|+...|..|..
T Consensus 12 ~~l~~~~~~~~~i~~l~~~-g--~-s---~~eIA~~l----gis~~TV~~~l~ 53 (55)
T 2x48_A 12 YYVESEDDLVSVAHELAKM-G--Y-T---VQQIANAL----GVSERKVRRYLE 53 (55)
T ss_dssp EEECSHHHHHHHHHHHHHT-T--C-C---HHHHHHHH----TSCHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHc-C--C-C---HHHHHHHH----CcCHHHHHHHHH
Confidence 3567 7887777777652 2 2 2 34789999 699999988864
No 136
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.79 E-value=14 Score=28.78 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=15.7
Q ss_pred HHHHHhhcCCCCCCceeeccccchhHHH
Q 046372 64 ISARLRQYGKIEGKNVFYWFQNYKARER 91 (266)
Q Consensus 64 IA~~L~~~g~LsE~qVqvWFQNRRAKeK 91 (266)
||+.| ||++..|+.+...=|.|.|
T Consensus 157 IA~~l----gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 157 LAAET----GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp STTTC----CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 45555 7899889877765444444
No 137
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=21.12 E-value=1.4e+02 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLR 69 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~ 69 (266)
..+++++|+.||+.|.+.....|+.+.+=+.|-.|-
T Consensus 15 ~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv 50 (144)
T 1y8m_A 15 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLI 50 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 457999999999999876346899998888887773
No 138
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.03 E-value=20 Score=28.55 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhH
Q 046372 36 PTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKAR 89 (266)
Q Consensus 36 FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAK 89 (266)
+++.|..+|.-.|.. + -..++||+.| ||++..|+.+...=|.|
T Consensus 199 L~~~~r~vl~l~~~~-g------~s~~EIA~~l----gis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYYK-D------QTQSEVASRL----GISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhc-C------CCHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 567777777765531 2 2334799999 69999999887644433
No 139
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.02 E-value=34 Score=25.07 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=28.7
Q ss_pred CCCCCHHHHHH-HHHHHhhCCCCCCCH-HHHHHHHHHHhhcCCCCCCceeecc
Q 046372 33 RWTPTTDQIRI-LKELYYNNGVRSPTA-EQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 33 Rt~FT~eQL~i-LE~~F~~~~n~yPs~-e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
|..||+++... ++.+... +..+++. ....+||.+| ||+...|..|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~-~~~~~s~g~s~~~va~~~----gIs~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLES-QGEYDSQWATICSIAPKI----GCTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHH----TSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc-ccccccccccHHHHHHHH----CcCHHHHHHHH
Confidence 44689998854 4444331 1012221 3566899999 69999999995
No 140
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=21.01 E-value=40 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHH
Q 046372 34 WTPTTDQIRILKELYYN----NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~----~~n~yPs~e~R~eIA~~L 68 (266)
..+|++|+..|+++|.. .++.+.+.++...+...|
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~ 43 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVL 43 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHh
Confidence 45799999999999963 234456666555544444
No 141
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.94 E-value=14 Score=27.98 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 046372 30 TCPRWTPTTDQIRILKELYYN---NGVRSPTAEQIQKISARLRQYGKIEGKNVFYWF 83 (266)
Q Consensus 30 rR~Rt~FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWF 83 (266)
...+|.+|++++..|++.|.. .++.+.+.+ +|...|... ++++..|..+|
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~---el~~~l~~~-gl~~~el~~i~ 62 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGS---VAKNFFTKS-KLSIPELSYIW 62 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHH---HHHHHCCSS-SCSSCCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHH---HHHHHHHHc-CCCHHHHHHHH
Confidence 346789999999999999963 223455555 445555433 48887777555
No 142
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=20.62 E-value=39 Score=29.19 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccccchhH
Q 046372 32 PRWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKAR 89 (266)
Q Consensus 32 ~Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQNRRAK 89 (266)
....+|+.++++|.-+.+ + +. .++||+.| +|+++.|+....|=+.|
T Consensus 194 ~~~~Lt~re~~vl~~~~~--G--~s----~~eIA~~l----~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSR--G--KT----NWEIATIL----NISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCCCHHHHHHHHHHHT--T--CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHc--C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 345799999999998863 3 22 24799999 69999998765544433
No 143
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.34 E-value=94 Score=23.66 Aligned_cols=49 Identities=12% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcC----C--CCCCceeeccccc
Q 046372 33 RWTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYG----K--IEGKNVFYWFQNY 86 (266)
Q Consensus 33 Rt~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g----~--LsE~qVqvWFQNR 86 (266)
+..+++++...|.+.... ++..+.. +|+..|.... + ++...|..|...+
T Consensus 88 ~~~~~~~~~~~I~~~~~~--~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ--NPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH--CTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHh--CcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 446799999999888753 3444543 5677774332 2 6677788776544
No 144
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.33 E-value=28 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHhh---CCCCCCCHHHHHHHHHHH
Q 046372 36 PTTDQIRILKELYYN---NGVRSPTAEQIQKISARL 68 (266)
Q Consensus 36 FT~eQL~iLE~~F~~---~~n~yPs~e~R~eIA~~L 68 (266)
+|++++..|+..|.. .++.+.+.++...+...+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 36 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRAL 36 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 578999999999952 234466666665555555
No 145
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.12 E-value=42 Score=24.87 Aligned_cols=41 Identities=5% Similarity=0.113 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhcCCCCCCceeecccc
Q 046372 34 WTPTTDQIRILKELYYNNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQN 85 (266)
Q Consensus 34 t~FT~eQL~iLE~~F~~~~n~yPs~e~R~eIA~~L~~~g~LsE~qVqvWFQN 85 (266)
..+|.++...+-.++. .+ . + ..+||+.| +++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~-~G--~-s---~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN--V-S---LHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT--C-C---HHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHH-cC--C-C---HHHHHHHH----CcCHHHHHHHHHc
Confidence 4578998888877875 23 2 2 34789999 6999999999864
Done!