BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046373
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHLAA+ GH +V L+E A + + T LH A +G+++VVK+L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
D +++K G+T L++AA + E+V LLE V+ + NG+T LH AA + + E
Sbjct: 57 AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A +G+++VVK+L + D +++K G+T L++AA + E+V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 179 HEGPNGKTALHAAAMHFYFEND----QTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
+ NG+T LH AA + + E + AD+ KD+ T LHLAA GH V+ +L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH +V L+E A + + T LH A +G++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHL 81
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
+VVK+L + D +++K G+T L++AA + E+V LLE
Sbjct: 82 EVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND----QTAADI 206
G+T L++AA + E+V LLE V+ + NG+T LH AA + + E + AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 ADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
KD+ T LHLAA GH V+ +L D G LH A + L +K+L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLL 120
Query: 266 LK 267
L+
Sbjct: 121 LE 122
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 183 NGKTALHAAAMHFYFEND----QTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPK 237
NG+T LH AA + + E + AD+ KD+ T LHLAA GH V+ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEF 297
D G LH A + L +K+LL+ A + + D NG TPLH+ A R
Sbjct: 61 VNA-KDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHL--AARNGHL 114
Query: 298 FKIKVRYDAG 307
+K+ +AG
Sbjct: 115 EVVKLLLEAG 124
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH V+ +L D G LH A + L +K+LL+ A +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE---AGA 59
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNK 315
+ D NG TPLH+ A R +K+ +AG + A +K
Sbjct: 60 DVNAKDKNGRTPLHL--AARNGHLEVVKLLLEAGADVNAKDK 99
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 14/64 (21%)
Query: 49 ISQKRKNGSTKFI-----GEMLKKCPSLLLQ----VNAK---GDTPLHLAAKFGHSNIVS 96
++ K KNG T G + + LLL+ VNAK G TPLHLAA+ GH +V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHL--EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 97 FLIE 100
L+E
Sbjct: 119 LLLE 122
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 43/274 (15%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
N K +TPLH+AA+ GH+ + +L++ +AK+ A + T LH A G+ +VK
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVK 97
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
+L + + + P G T L++AA + E V+ LLE S + G T LH AA +
Sbjct: 98 LLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 195 -------FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGW 247
E D A A +T LH+A H ++ + L P+ W
Sbjct: 157 GKVRVAELLLERD--AHPNAAGKNGLTPLHVAV---HHNNLDIVKLLLPRGGS-PHSPAW 210
Query: 248 NFLHYAMVSFKLHELKILLKNPLARSLI-YEGDNN-----GNTPLHVLAAIRPKEFFKIK 301
N ++ K +++++ ARSL+ Y G N G TPLH+ A E +
Sbjct: 211 NGYTPLHIAAKQNQVEV------ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 302 VRYDAGGNYG----------AVNKQNVSVTDVLI 325
+ A GN G + +V V DVLI
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
N G TPLHL A+ GH + LI+ M+ T T LH A +GN+++VK
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGV-----MVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
L + D ++ K G + L+ AA+ ++++V LL+N S + +G T L
Sbjct: 330 LLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 34/207 (16%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A G++ +VK L ++ P N +T L+MAA ++E+ LL+N V+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTA----LHLAAGQGHART 227
+ + +T LH AA + EN+ A+ + TA LH+AA +GH
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENN------ANPNLATTAGHTPLHIAAREGH--- 125
Query: 228 VETILFLDPK--CYELVDHRGWNFLHYAMVSFKLHELKILLK---NPLARSLIYEGDNNG 282
VET+L L K + +G+ LH A K+ ++LL+ +P A NG
Sbjct: 126 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA------AGKNG 179
Query: 283 NTPLHVLAAIRPKEFFKIKVRYDAGGN 309
TPLHV A+ +K+ GG+
Sbjct: 180 LTPLHV--AVHHNNLDIVKLLLPRGGS 204
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
G TPLH+A+ +G+ +V FL++ +A + A + + LH+A G+ +V +L
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY------SPLHQAAQQGHTDIVTLLL 364
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEM--VIELLENCTS 176
K P + G T L +A Y + V++++ + TS
Sbjct: 365 KNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLHLAA+ GH +V L+ + +++ T LH A +G+ +VVK+
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQG-----ADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
L Q D P +++ GKT L++AAE + E+V LL + +G+T L A H
Sbjct: 89 LLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
E
Sbjct: 148 NEE 150
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G+ + V L+E + ++++ T LH A +G+ +VVK+L Q D P
Sbjct: 11 AAENGNKDRVKDLLENG-----ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PN 64
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+++ GKT L++AAE + E+V LL + + +GKT LH AA + + E
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 117
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE------NDQTAADIAD 208
L AAE + V +LLEN V+ +GKT LH AA + + E + + D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 209 KDRKMTALHLAAGQGHARTVETILF--LDPKCYELVDHRGWNFLHYAMVSFKLHELKILL 266
D K T LHLAA GH V+ +L DP D G LH A + +K+LL
Sbjct: 68 SDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLL 123
Query: 267 KNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
+ D++G TPL + +E K+
Sbjct: 124 SQGADPNT---SDSDGRTPLDLAREHGNEEVVKL 154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLHLAA+ GH +V L+ + ++++ T L A HGN +VVK+
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQG-----ADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 136 LTKQ 139
L KQ
Sbjct: 155 LEKQ 158
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
+ E+L PSLLLQ + G PLH + F I SFL+ +K+ + ++ T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
H A GN++VVK L + PD N+ G T L++A ++ E+ L+EN SV
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
+ + LH AA + ++A + DK + T L A +GH +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
+ Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
+ E+L PSLLLQ + G PLH + F I SFL+ +K+ + ++ T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
H A GN++VVK L + PD N+ G T L++A ++ E+ L+EN SV
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
+ + LH AA + ++A + DK + T L A +GH +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
+ Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
+ E+L PSLLLQ + G PLH + F I SFL+ +K+ + ++ T
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
H A GN++VVK L + PD N+ G T L++A ++ E+ L+EN SV
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
+ + LH AA + ++A + DK + T L A +GH +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
+ Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
VNA+ G TPLHLAA FGH IV L++ A + A + + T LH A G+
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV------TPLHLAARRGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
+++V++L K D S++ +G T L++AA+ + E+V LL+N V+ + GKTA
Sbjct: 93 LEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L++ + +++ T LH A G++
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG-----ADVNASDSHGFTPLHLAAKRGHL 126
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
++V++L K D +++K+GKT+ ++ + +E + E+L+
Sbjct: 127 EIVEVLLKNGADV-NAQDKFGKTAFDISID-NGNEDLAEILQ 166
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D + + G T L++AA + E+V LL+N V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
G T LH AA + E + AD+ A T LHLAA +GH VE +L
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A G++++V++L K D +++ G T L++AA + E+V LL+N V+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 179 HEGPNGKTALHAAAMHFYFE 198
+G T LH AA + E
Sbjct: 108 ASDSHGFTPLHLAAKRGHLE 127
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ G TPLHLAAK GH IV L++ Q + TA
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ-----DKFGKTA 149
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 150 FDISIDNGNEDLAEILQK 167
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
D GW LH A L +++LLKN + + D+ G TPLH+ A E ++ +
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 303 R----YDAGGNYG------AVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNG 350
+ +A ++G A + ++ + +VL+ ++ + F + ++S DNG
Sbjct: 101 KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD-KFGKTAFDISIDNG 157
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
+G TPLHLAA GH IV L++ + + + T LH A +G++++V++L
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGA-----DVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
K D +++ YG T L++AA+ + E+V LL++ V+ + GKTA
Sbjct: 101 KYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +++ G T L++AA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
+G T LH AA + + E + AD+ +D +T LHLAA +GH VE +L
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 203 AADI-ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE 261
AD+ A D+ T LHLAA GH VE +L D GW LH A + L
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNARDTDGWTPLHLAADNGHLEI 95
Query: 262 LKILLKNPLARSLIYEGDNN-----GNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQ 316
+++LLK Y D N G TPLH+ A E ++ +++ G + A +K
Sbjct: 96 VEVLLK--------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH--GADVNAQDKF 145
Query: 317 NVSVTDVLIYGSRE 330
+ D+ I E
Sbjct: 146 GKTAFDISIDNGNE 159
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 55 NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN 114
NG + + +LK + Q +A G TPLHLAA GH IV L++ + +
Sbjct: 90 NGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVEVLLKHGA-----DVNAQD 143
Query: 115 NEKNTALHEAVCHGNVQVVKILTK 138
TA ++ +GN + +IL K
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNA+ GDTPLHLAA+ GH IV L++ A + + +T LH A G++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG--ADVNALDFSG---STPLHLAAKRGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
++V++L K D +++ G T L++AA+ + E+V LL+ V+ + GKTA
Sbjct: 94 EIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +E+ YG T L++AA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
+G T LH AA + E + AD+ AD T LHLAA GH VE +L
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ G TPLHLAAK GH IV L++ + + +T
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA-----DVNADDTIGSTP 116
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
LH A G++++V++L K D +++K+GKT+ ++ +
Sbjct: 117 LHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
+A G TPLHLAA +GH IV L++ A + A +M +T LH A G++++V+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM------GSTPLHLAALIGHLEIVE 97
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
+L K D + + +G T L++AA + E+V LL++ V+ + GKTA
Sbjct: 98 VLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ G TPLHLAA GH IV L++ + + +T
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA-----DVNAVDTWGDTP 116
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
LH A G++++V++L K D +++K+GKT+
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTA 149
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATD-ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
G T LH AA+ + E + AD+ D T LHLAA GH VE +L
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + V+ GDTPLHLAA GH IV L++ Q + TA
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-----DKFGKTA 149
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 150 FDISIDNGNEDLAEILQK 167
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLH AA+ GH +V LI + + +++ T LH A +G+ +VVK+
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
L + D +++ G+T L+ AAE + E+V L+ V+ +G+T L A H
Sbjct: 89 LISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
E
Sbjct: 148 NEE 150
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G+ + V LIE + ++++ T LH A +G+ +VVK+L + D
Sbjct: 11 AAENGNKDRVKDLIENG-----ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-N 64
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+++ G+T L+ AAE + E+V L+ V+ + +G+T LH AA + + E
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 117
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 63 EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
E++K S VNAK G TPLH AA+ GH +V LI + + ++++ T
Sbjct: 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNTSDSDGRT 138
Query: 120 ALHEAVCHGNVQVVKILTKQ 139
L A HGN +VVK+L KQ
Sbjct: 139 PLDLAREHGNEEVVKLLEKQ 158
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
EA +GN VK L + D S++ G+T L+ AAE + E+V L+ V+ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 183 NGKTALHAAAMHFYFENDQ----TAADIADKDRK-MTALHLAAGQGHARTVETIL 232
+G+T LH AA + + E + AD+ KD T LH AA GH V+ ++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 42/151 (27%)
Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----TAADIADKD 210
L AAE + V +L+EN V+ +G+T LH AA + + E + AD+ KD
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 211 RK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNP 269
T LH AA GH V+ ++ +G A V+ K
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLIS-----------KG------ADVNAK----------- 99
Query: 270 LARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
D++G TPLH A KE K+
Sbjct: 100 ---------DSDGRTPLHHAAENGHKEVVKL 121
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 74 QVNAKGD---TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
VNA+ D TPLHLAA GH IV L++ A + A M +T LH A +G+
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM------GDTPLHLAALYGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
+++V++L K D ++ YG T L++AA+ + E+V LL+ V+ + GKTA
Sbjct: 93 LEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + + GDTPLHLAA +GH IV L++ + T+ T
Sbjct: 62 IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG-----ADVNATDTYGFTP 116
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
LH A G++++V++L K D +++K+GKT+
Sbjct: 117 LHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTA 149
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +E+ GKT L++AA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
G T LH AA++ + E + AD+ D T LHLAA GH VE +L
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
D G LH A + L +++LLK+ + + D G+TPLH+ A E ++ +
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHG---ADVNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 303 RYDAGGN----YG------AVNKQNVSVTDVLI-YGSRELTLSNVNFQEEVR----NLSK 347
+ A N YG A + ++ + +VL+ YG ++VN Q++ ++S
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG------ADVNAQDKFGKTAFDISI 154
Query: 348 DNG 350
DNG
Sbjct: 155 DNG 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLH AA+ GH IV L+ + +++ T LH A +G+ ++VK+
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKG-----ADPNAKDSDGRTPLHYAAENGHKEIVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
L + D P +++ G+T L+ AAE + E+V LL + +G+T L A H
Sbjct: 89 LLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
E
Sbjct: 148 NEE 150
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G+ + V L+E ++++ T LH A +G+ ++VK+L + D P
Sbjct: 11 AAENGNKDRVKDLLENG-----ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PN 64
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+++ G+T L+ AAE + E+V LL + + +G+T LH AA + + E
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 117
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
EA +GN VK L + D P + + G+T L+ AAE + E+V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 183 NGKTALHAAAMHFYFENDQ----TAADIADKDRK-MTALHLAAGQGHARTVETIL 232
+G+T LH AA + + E + AD KD T LH AA GH V+ +L
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLH AA+ GH IV L+ + ++++ T L A HGN ++VK+
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKG-----ADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 136 LTKQ 139
L KQ
Sbjct: 155 LEKQ 158
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 214 TALHLAAGQGHARTVETILF--LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK---N 268
T LH AA GH V+ +L DP D G LHYA + +K+LL +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 269 PLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
P A+ D++G TPLH A KE K+
Sbjct: 96 PNAK------DSDGRTPLHYAAENGHKEIVKL 121
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
++ G TPLH AAK GH IV LI + + +++ T LH A G+ ++VK+
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKG-----ADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
L + D +++ G+T L+ AA+ + E+V L+ V+ +G+T L A H
Sbjct: 89 LISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 63 EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
E++K S VNAK G TPLH AAK GH IV LI + + ++++ T
Sbjct: 84 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-----ADVNTSDSDGRT 138
Query: 120 ALHEAVCHGNVQVVKILTKQ 139
L A HGN ++VK+L KQ
Sbjct: 139 PLDLAREHGNEEIVKLLEKQ 158
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----TAADIADKD 210
L AAE + V +L+EN V+ +G+T LH AA + E + AD+ KD
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 211 RK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNP 269
T LH AA +GH V+ +L D G LHYA +K+L+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 270 LARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
+ + D++G TPL + +E K+
Sbjct: 127 ---ADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G+ + V LIE + ++++ T LH A G+ ++VK+L + D
Sbjct: 11 AAENGNKDRVKDLIENG-----ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-N 64
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+++ G+T L+ AA+ + E+V L+ V+ + +G+T LH AA + E
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 117
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 65 LKKCPSLLLQVNA---KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTAL 121
L K P+ L VN G +PLH+AA G ++++ L++ A + N ++ L
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-----NADQAVPL 123
Query: 122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
H A G+ QVVK L + P ++ G T L A G + E+V LL++ S++
Sbjct: 124 HLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 182 PNGKTALHAAAM--HFYF---------------ENDQTAADIADKDRKMTAL 216
G TALH A + H + + +TA D A+++ K+ L
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL 234
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
G TPLHLAAK GH IV L++ A + AW +N T LH A +G++++V++L
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAW------DNYGATPLHLAADNGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
K D +++ G T L++AA + E+V LL+ V+ + GKTA
Sbjct: 101 KHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G + V L +A + T+ +T LH A G++++V++L K D
Sbjct: 21 AARAGQDDEVRIL-----MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA 75
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+N YG T L++AA+ + E+V LL++ V+ + G T LH AA + E
Sbjct: 76 WDN-YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L A G+ E+ I L+ N V+ G T LH AA + E + AD+
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 207 ADKDR-KMTALHLAAGQGHARTVETIL----FLDPKCYELVDHRGWNFLHYAMVSFKLHE 261
D T LHLAA GH VE +L ++ K YE G+ LH A L
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE-----GFTPLHLAAYDGHLEI 128
Query: 262 LKILLK 267
+++LLK
Sbjct: 129 VEVLLK 134
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 55 NGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMR 111
NG + + +LK VNAK G TPLHLAA GH IV L++ +
Sbjct: 90 NGHLEIVEVLLKHGAD----VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-----ADVN 140
Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTK 138
+ TA ++ +GN + +IL K
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L L A + + + T LH A G++
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
++V++L K D +++K G T L++AA + E+V LL+ V+ + GKTA
Sbjct: 94 EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L L A + + + T LH A G++
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMA 158
++V++L K D +++K+GKT+ ++
Sbjct: 127 EIVEVLLKAGADV-NAQDKFGKTAFDIS 153
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 203 AADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE 261
AD+ KD+ T LHLAA +GH VE +L D G+ LH A L
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEI 95
Query: 262 LKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVT 321
+++LLK A + + D +G TPLH+ A R ++V AG + A +K +
Sbjct: 96 VEVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Query: 322 DVLIYGSRE 330
D+ I E
Sbjct: 151 DISIDNGNE 159
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L L A + + TA ++ +GN
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 131 QVVKIL 136
+ +IL
Sbjct: 160 DLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHLAA+ GH +V L+E A + + T LH A +G+++VVK+L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
D +++K G+T L++AA + E+V LLE
Sbjct: 57 AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A +G+++VVK+L + D +++K G+T L++AA + E+V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 179 HEGPNGKTALHAAAMHFYFE 198
+ NG+T LH AA + + E
Sbjct: 63 AKDKNGRTPLHLAARNGHLE 82
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND----QTAADI 206
G+T L++AA + E+V LLE V+ + NG+T LH AA + + E + AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 ADKDRK-MTALHLAAGQGHARTVETIL 232
KD+ T LHLAA GH V+ +L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH V+ +L D G LH A + L +K+LL+ A +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE---AGA 59
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAG 307
+ D NG TPLH+ A R +K+ +AG
Sbjct: 60 DVNAKDKNGRTPLHL--AARNGHLEVVKLLLEAG 91
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 183 NGKTALHAAAMHFYFEND----QTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPK 237
NG+T LH AA + + E + AD+ KD+ T LHLAA GH V+ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 238 CYELVDHRGWNFLHYAMVSFKLHELKILLK 267
D G LH A + L +K+LL+
Sbjct: 61 VNA-KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD 305
G LH A + L +K+LL+ A + + D NG TPLH+ A R +K+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHL--AARNGHLEVVKLLLE 56
Query: 306 AGGNYGAVNK 315
AG + A +K
Sbjct: 57 AGADVNAKDK 66
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+A G TPLHLAA +GH IV L++ + + +T LH A G++++V++
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGA-----DVNAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
L K D + + +G T L++AA + E+V LL++ V+ + GKTA
Sbjct: 99 LLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ G TPLHLAA GH IV L++ + + +T
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA-----DVNAVDTWGDTP 116
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
LH A G++++V++L K D +++K+GKT+
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTA 149
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATD-ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
G T LH AA+ + E + AD+ D T LHLAA GH VE +L
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + V+ GDTPLHLAA GH IV L++ Q + TA
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-----DKFGKTA 149
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 150 FDISIDNGNEDLAEILQK 167
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
D G LH A L +++LLK+ + I D G+TPLH+ A I E ++ +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIXGSTPLHLAALIGHLEIVEVLL 100
Query: 303 RYDA 306
++ A
Sbjct: 101 KHGA 104
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L L A + + + T LH A G++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
++V++L K D +++K G T L++AA + E+V LL+ V+ + GKT
Sbjct: 82 EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 49 ISQKRKNGSTKF----------IGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIV 95
++ K K+G T I E+L K + VNAK G TPLHLAA+ GH IV
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
L L A + + + T LH A G++++V++L K D +++K+GKT
Sbjct: 85 EVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPF 138
Query: 156 YMA 158
+A
Sbjct: 139 DLA 141
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 204 ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHEL 262
AD+ KD+ T LHLAA +GH VE +L D G+ LH A L +
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIV 84
Query: 263 KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD 322
++LLK A + + D +G TPLH+ A R ++V AG + A +K + D
Sbjct: 85 EVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 323 VLIYGSRE 330
+ I E
Sbjct: 140 LAIREGHE 147
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 49 ISQKRKNGSTKF----------IGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIV 95
++ K K+G T I E+L K + VNAK G TPLHLAA+ GH IV
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
L L A + + T A+ G+ + ++L K
Sbjct: 118 EVL-----LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNAK G TPLHLAA+ GH IV L L A + + + T LH A G++
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
++V++L K D +++K G T L++AA + E+V LL+ V+ + GKT
Sbjct: 82 EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 49 ISQKRKNGSTKF----------IGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIV 95
++ K K+G T I E+L K + VNAK G TPLHLAA+ GH IV
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
L L A + + + T LH A G++++V++L K D +++K+GKT
Sbjct: 85 EVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPF 138
Query: 156 YMAAEGRYSEMVIELLENCT 175
+A + +E + E+L+
Sbjct: 139 DLAID-NGNEDIAEVLQKAA 157
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 204 ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHEL 262
AD+ KD+ T LHLAA +GH VE +L D G+ LH A L +
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIV 84
Query: 263 KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD 322
++LLK A + + D +G TPLH+ A R ++V AG + A +K + D
Sbjct: 85 EVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 323 VLIYGSRE 330
+ I E
Sbjct: 140 LAIDNGNE 147
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L AA G+ E+ I L+ N V+ NG T LH AA + E + AD+
Sbjct: 7 GKKLLEAAAAGQDDEVRI-LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 207 ADKDRK-MTALHLAAGQGHARTVETIL--FLDPKCYELVDHRGWNFLHYAMVSFKLHELK 263
D +T LHLAA GH VE +L D Y D GW LH A +S +L ++
Sbjct: 66 NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY---DRAGWTPLHLAALSGQLEIVE 122
Query: 264 ILLK 267
+LLK
Sbjct: 123 VLLK 126
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 75 VNAKGD---TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
VNA D TPLHLAA G IV L++ + +++ T LH A G+++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGA-----DVNASDSAGITPLHLAAYDGHLE 86
Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
+V++L K D + ++ G T L++AA E+V LL++ V+ + G TA
Sbjct: 87 IVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTA 141
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +++ G T L++AA E+V LL+N V+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
G T LH AA + E + AD+ DR T LHLAA G VE +L
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 55 NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERA------KLAAWQ 108
NG + + E+L K + + ++ G TPLHLAA GH IV L++ A W
Sbjct: 49 NGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW- 106
Query: 109 MMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
T LH A G +++V++L K D +++ G T+
Sbjct: 107 ----------TPLHLAALSGQLEIVEVLLKHGADV-NAQDALGLTA 141
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLH+AA GH IV L+ + + T LH A G++++V++L K
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGA-----DVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
D +++ G T LY+AA + E+V LL++ V+ + GKTA
Sbjct: 90 YGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D + + YG+T L+MAA + E+V LL N V+
Sbjct: 6 LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
NG T LH AA + E + AD+ KD +T L+LAA GH VE +L
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L + + + V+ G TPLHLAA GH IV L++ + + T
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA-----DVNAKDATGITP 104
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
L+ A G++++V++L K D +++K+GKT+
Sbjct: 105 LYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAF 138
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
DH G LH A L +++LL+N + + D NG TPLH+ A++ E ++ +
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV---DTNGTTPLHLAASLGHLEIVEVLL 88
Query: 303 RYDA 306
+Y A
Sbjct: 89 KYGA 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
G TPLHLAA GH IV L++ A + A + + T LH A G++++V++L
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI------TPLHLAAATGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
K D +N G T L++AA+ + E+V LL++ V+ + GKTA
Sbjct: 101 KHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G + V L +A + T+N+ T LH A +G++++V++L K D
Sbjct: 21 AARAGQDDEVRIL-----MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
S+ G T L++AA + E+V LL++ V+ +G T LH AA + + E
Sbjct: 76 SD-LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++N G T L++AA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
G T LH AA + E + AD+ D T LHLAA GH VE +L
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH VE +L + D G LH A + L +++LLK+ +
Sbjct: 49 TPLHLAASNGHLEIVE-VLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG---A 104
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
+ DN+G+TPLH+ A E ++ +++ G + A +K + D+ I E
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + + G TPLHLAAK+GH IV L++ Q + TA
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-----DKFGKTA 149
Query: 121 LHEAVCHGNVQVVKIL 136
++ +GN + +IL
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
IL + D+ G+ LH A + L +++LLKN + + D G TPLH+ A
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG---ADVNASDLTGITPLHLAA 88
Query: 291 AIRPKEFFKIKVRYDA 306
A E ++ +++ A
Sbjct: 89 ATGHLEIVEVLLKHGA 104
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
G TPLHLAA FGH IV L++ A + A + + T LH A G+++VV++L
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV------TPLHLAADRGHLEVVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
K D +++ G T L++AA + E+V LL++ V+ + GKTA
Sbjct: 101 KNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A G++++V++L K D +++ G T L++AA+ + E+V LL+N V+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 179 HEGPNGKTALHAAAMHFYFE 198
NG T LH AA + E
Sbjct: 108 ANDHNGFTPLHLAANIGHLE 127
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L A G+ E+ I L+ N V+ G T LH AA + E + AD+
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 207 -ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
AD +T LHLAA +GH VE +L + DH G+ LH A L +++L
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVE-VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 266 LK 267
LK
Sbjct: 133 LK 134
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH VE +L + D G LH A L +++LLKN +
Sbjct: 49 TPLHLAAYFGHLEIVE-VLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG---A 104
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
+ D+NG TPLH+ A I E ++ +++ G + A +K + D+ I E
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHLAA GH IV L++ + ++ T LH A G++++V++L K
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGA-----DVDASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
D ++ G T L++AA+ Y E+V LL++ V+ + GKTA
Sbjct: 102 NGADVNAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G + V L +A + +N T LH A G++++V++L K D
Sbjct: 21 AARAGQDDEVRIL-----MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
S+ +G T L++AA + E+V LL+N V+ +G T LH AA Y E
Sbjct: 76 SD-VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++N G T L++AA + E+V LL++ V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
G T LH AA + E + AD+ D MT LHLAA G+ VE +L
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH VE +L + D G+ LH A L +++LLKN +
Sbjct: 49 TPLHLAAYSGHLEIVE-VLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
+ D++G TPLH+ A E ++ +++ G + A +K + D+ I E
Sbjct: 108 AM---DSDGMTPLHLAAKWGYLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + +++ G TPLHLAAK+G+ IV L++ Q + TA
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-----DKFGKTA 149
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 150 FDISIDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
G TPLHLAA +GH IV L++ A + A+ + +T LH A G++++V++L
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
K D ++ G T L++AA + E+V LL+ V+ + GKTA
Sbjct: 101 KNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + + G TPLHLAA FGH IV L++ + ++ T
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG-----ADVNAKDDNGITP 116
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
LH A G++++V++L K D +++K+GKT+
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAF 150
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA + E+V LL+N V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAAD-VVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
G T LH AA + E + AD+ A D +T LHLAA +GH VE +L
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A G++++V++L K D + + G T L++AA + E+V LL+N V+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 179 HEGPNGKTALHAAAMHFYFE 198
+ NG T LH AA + E
Sbjct: 108 AKDDNGITPLHLAANRGHLE 127
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETIL--FLDPKCYELVDHRGWNFLHYAMVSF 257
D AAD+ T LHLAA GH VE +L D Y D G LH A
Sbjct: 39 DVNAADVV----GWTPLHLAAYWGHLEIVEVLLKNGADVNAY---DTLGSTPLHLAAHFG 91
Query: 258 KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQN 317
L +++LLKN + + D+NG TPLH+ A E ++ ++Y G + A +K
Sbjct: 92 HLEIVEVLLKNG---ADVNAKDDNGITPLHLAANRGHLEIVEVLLKY--GADVNAQDKFG 146
Query: 318 VSVTDVLIYGSRE 330
+ D+ I E
Sbjct: 147 KTAFDISINNGNE 159
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 32/159 (20%)
Query: 65 LKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL-------AAWQMM------- 110
L K +L+ +A+G T LHLAAK GH +V +L+ ++ W M
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 111 ---------------RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
+ +NE+N LH A G V + +IL D ++ N +G + L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPL 181
Query: 156 YMAA-EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
++AA E RY + V+ L + V+ + G+T L A++
Sbjct: 182 HIAARENRY-DCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ- 139
+PLH AA+ GH +I L++ A + + ++ T L EA + +++ VK L K
Sbjct: 13 SPLHAAAEAGHVDICHMLVQ-----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 140 ---DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
DP ++ G T L++AA+ + E+V LL N
Sbjct: 68 ALVDP-----KDAEGSTCLHLAAKKGHYEVVQYLLSN 99
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----T 202
E++ ++ L+ AAE + ++ L++ ++ + +T L AA + + E +
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 203 AADIADKDRK-MTALHLAAGQGHARTVETILF---LDPKCYELVDHRGWNFLHYAMVSFK 258
A + KD + T LHLAA +GH V+ +L +D C D GW + +A
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ---DDGGWTPMIWATEYKH 123
Query: 259 LHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
+ +K+LL S I DN N LH A
Sbjct: 124 VDLVKLLLSKG---SDINIRDNEENICLHWAA 152
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER 101
I E+L L VN GD+PLH+AA+ + V + R
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
KG+TPLHLAA + H IV L++ + +N+ +T LH A G++++V++L
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGA-----DVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
K D +++K+GKT+ ++ + +E + E+L+
Sbjct: 101 KHGADV-NAQDKFGKTAFDISID-NGNEDLAEILQ 133
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ K G T L++AA+ + E+V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRK-GNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 181 GPNGKTALHAAAMHFYFE 198
+G T LH AA+ + E
Sbjct: 77 DNDGSTPLHLAALFGHLE 94
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHLAA FGH IV L++ Q + TA ++ +GN + +IL K
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQ-----DKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L A G+ E+ I L+ N V+ G T LH AA + + E + AD+
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 207 -ADKDRKMTALHLAAGQGHARTVETIL 232
A + T LHLAA GH VE +L
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
D +G LH A L +++LLK+ + + DN+G+TPLH+ A E ++ +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHG---ADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 303 RYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
++ G + A +K + D+ I E
Sbjct: 101 KH--GADVNAQDKFGKTAFDISIDNGNE 126
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+A G TPLHLAA GH IV L++ + ++ T L A G++++V++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNG-----ADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
L K D + + G T L++AA + E+V LL+N V+ + GKTA
Sbjct: 99 LLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 9/105 (8%)
Query: 55 NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMT 113
NG + + E+L K + + V+ G TPL LAA FGH IV L++ A + A M
Sbjct: 57 NGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM---- 111
Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA 158
E +T LH A G++++V++L K D +++K+GKT+ ++
Sbjct: 112 --EGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDIS 153
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
T LH A +G++++V++L K D ++ G T L +AA + E+V LL+N V+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 179 HEGPNGKTALHAAAMHFYFE 198
G T LH AAM + E
Sbjct: 108 ANDMEGHTPLHLAAMFGHLE 127
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS 273
T LHLAA GH VE +L + VDH G L A + L +++LLKN +
Sbjct: 49 TPLHLAAFNGHLEIVE-VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---A 104
Query: 274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
+ D G+TPLH+ A E ++ ++ G + A +K + D+ I E
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGNE 159
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 45 HINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL 104
H+ I+ KNG+ +M +G TPLHLAA FGH IV L++
Sbjct: 92 HLEIVEVLLKNGADVNANDM-------------EGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 105 AAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
Q + TA ++ +GN + +IL K
Sbjct: 139 VNAQ-----DKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 81 TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
TPLH+AA GH+NIV L++ A + A M++M TALH A H + +VV++L K
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKM------TALHWATEHNHQEVVELLIKY 122
Query: 140 DPDYPYSENKYGKTSL 155
D ++++K+ KT+
Sbjct: 123 GADV-HTQSKFCKTAF 137
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G +PLHLAA++GH + L+ RA ++ ++ T LH A G+ +V++L K
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKV----DRTPLHMAASEGHANIVEVLLK 88
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
D +++ T+L+ A E + E+V L++ V + KTA
Sbjct: 89 HGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE-GRYSEMVIELLENCTSVSH 179
L EA G V+IL P++ + G + L++AA+ G +S + LL S
Sbjct: 6 LLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEV-LLRAGVSRDA 62
Query: 180 EGPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
+T LH AA + + AD+ KD KMTALH A H VE ++
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT---AADIA 207
GK L A G+ E+ I L+ N + + G + LH AA + +F + A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 208 DKDRKM--TALHLAAGQGHARTVETIL 232
D K+ T LH+AA +GHA VE +L
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLL 87
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHL GH I+ L++ A + ++ T LH A G++++V++L K
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAA-----DVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
D + + G T L++AAE + E+V LL+ V+ + GKTA
Sbjct: 102 YGADVNAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 55 NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN 114
NG + I E+L K + + + G TPLHLAA GH IV L++ + +
Sbjct: 57 NGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-----DVNAMD 110
Query: 115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
+ T LH A G++++V++L K D +++K+GKT+
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAF 150
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L A G+ E+ I L+ N V+ G T LH + + E + AAD+
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 207 ADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
D+ T LHLAA +GH VE +L + D++G+ LH A L +++L
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVL 132
Query: 266 LK 267
LK
Sbjct: 133 LK 134
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ +G TPLHLAA+ GH IV L++ + + TA
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-----DVNAQDKFGKTA 149
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 150 FDISIDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
V+ G TPLHLAA GH IV L++ A + A + T LH A G++++V
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF------TPLHLAAMTGHLEIV 96
Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
++L K D + + G T L++AA+ + E+V LL+ V+ + GKTA
Sbjct: 97 EVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNT 119
I E+L K + + + G TPLHLAA GH IV L++ A + A+ M +T
Sbjct: 62 IVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT------GST 115
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
LH A G++++V++L K D +++K+GKT+
Sbjct: 116 PLHLAADEGHLEIVEVLLKYGADVN-AQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +N G T L++AA + E+V LL++ V
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
G T LH AAM + E + AD+ D T LHLAA +GH VE +L
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLAR 272
+T LHLAA GH VE +L + D G+ LH A ++ L +++LLK
Sbjct: 48 LTPLHLAAVSGHLEIVE-VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK----- 101
Query: 273 SLIYEGDNN-----GNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYG 327
Y D N G+TPLH+ A E ++ ++Y G + A +K + D+ I
Sbjct: 102 ---YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDN 156
Query: 328 SRE 330
E
Sbjct: 157 GNE 159
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 242 VDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK 301
VD+ G LH A VS L +++LLK+ + + D G TPLH+ A E ++
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHG---ADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 302 VRYDAGGN----------YGAVNKQNVSVTDVLI-YGSRELTLSNVNFQEEVR----NLS 346
++Y A N + A ++ ++ + +VL+ YG ++VN Q++ ++S
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG------ADVNAQDKFGKTAFDIS 153
Query: 347 KDNG 350
DNG
Sbjct: 154 IDNG 157
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
AA AGD ET K+ T + ++T LH ++++ ++G+
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 70
Query: 63 EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
V+AK G PLH A +GH + L++ ++ + + K T
Sbjct: 71 -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 114
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
LHEA G ++ K+L + D P +N+ G T L + +G
Sbjct: 115 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 155
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
AA AGD ET K+ T + ++T LH ++++ ++G+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 66
Query: 63 EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
V+AK G PLH A +GH + L++ ++ + + K T
Sbjct: 67 -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 110
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
LHEA G ++ K+L + D P +N+ G T L + +G
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 151
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 112 MTNNEKNTALHEAVCHGNVQVV-KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIEL 170
M N+E + L EA G+V+ V K+ T Q + E + T L+ AA +V L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ-STPLHFAAGYNRVSVVEYL 61
Query: 171 LENCTSVSHEGPNGKTALHAAAMHFYFENDQ------TAADIADKDRKMTALHLAAGQGH 224
L++ V + G LH A + ++E + ++AD K T LH AA +G
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGK 120
Query: 225 ARTVETIL 232
+ +L
Sbjct: 121 YEICKLLL 128
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ-MMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+TPLHLA + G V L + +++ TN +T LH A HG + +V++L
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
D E G+T+L++A + + ++V LL+
Sbjct: 134 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
GD+ LHLA + +I + K + NN + T LH AV ++ + L
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS------VSHEGPNGKTALHAAA 192
D P + G T L++A E V L ++CT+ + NG T LH A+
Sbjct: 64 AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 193 MHFYFENDQ----TAADIADKD--RKMTALHLAA 220
+H Y + AD+ ++ TALHLA
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
AA AGD ET K+ T + ++T LH ++++ ++G+
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 68
Query: 63 EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
V+AK G PLH A +GH + L++ ++ + + K T
Sbjct: 69 -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 112
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
LHEA G ++ K+L + D P +N+ G T L + +G
Sbjct: 113 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 153
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I + + + SL Q + G+T LHLAA++ S+ L+E + A Q +N T
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-----DNMGRTP 58
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
LH AV V +IL + + G T L +AA M+ +L+ + V+
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 181 GPNGKTALH 189
GK+ALH
Sbjct: 119 DDLGKSALH 127
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN---TALHEAVCHGNVQ 131
++ G TPLHLAA+ GH IV L++ N E N T LH A G+++
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGA--------DVNAEDNFGITPLHLAAIRGHLE 94
Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAE 160
+V++L K D +++K+GKT+ ++ +
Sbjct: 95 IVEVLLKHGADV-NAQDKFGKTAFDISID 122
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
GK L A G+ E+ I L+ N V+ +G T LH AA + E + AD
Sbjct: 14 LGKKLLEAARAGQDDEVRI-LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 206 I-ADKDRKMTALHLAAGQGHARTVETIL 232
+ A+ + +T LHLAA +GH VE +L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 49 ISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ 108
I Q G + E L+K +L+ + + +G TPL A+ FG V FL+E W
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------WG 59
Query: 109 M-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEM 166
+ E+ +AL A G +V +L ++D D Y N G T L A G + +
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKC 117
Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFY 196
V LL ++ E +G T + A Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G TPLHLAA GH IV L++ + T N T LH A ++++V++L K
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGA-----DVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
D +++K+GKT+ ++ + +E + E+L+
Sbjct: 102 HGADVN-AQDKFGKTAFDISID-NGNEDLAEILQ 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+ILT D + + +G T L++AA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 181 GPNGKTALHAAAMHFYFE 198
G G+T LH AA + E
Sbjct: 77 GNTGRTPLHLAAWADHLE 94
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 60 FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
I + + + SL Q + G+T LHLAA++ S+ L+E + A Q +N T
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 92
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
LH AV V +IL + + G T L +AA M+ +L+ + V+
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
GK+ALH AAA++ + A+KD R+ T L LAA +G T + +L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 60 FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
I + + + SL Q + G+T LHLAA++ S+ L+E + A Q +N T
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 60
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
LH AV V +IL + + G T L +AA M+ +L+ + V+
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 180 EGPNGKTALH 189
GK+ALH
Sbjct: 121 VDDLGKSALH 130
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
++ G+T+L++AA S+ LLE + + G+T LHAA
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 60 FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
I + + + SL Q + G+T LHLAA++ S+ L+E + A Q +N T
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 93
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
LH AV V +IL + + G T L +AA M+ +L+ + V+
Sbjct: 94 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 153
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
GK+ALH AAA++ + A+KD R+ T L LAA +G T + +L
Sbjct: 154 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ-MMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+TPLHLA + G V L + +++ TN +T LH A HG + +V++L
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
D E G+T+L++A + + ++V LL+
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
Q+ GD+ LHLA + +I + K + NN + T LH AV ++
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS------VSHEGPNGKTA 187
+ L D P + G T L++A E V L ++CT+ + NG T
Sbjct: 62 EALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 188 LHAAAMHFYFENDQ----TAADIADKD--RKMTALHLAA 220
LH A++H Y + AD+ ++ TALHLA
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 49 ISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ 108
I Q G + E L+K +L+ + + +G TPL A+ FG V FL+E W
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------WG 59
Query: 109 M-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEM 166
+ E+ +AL A G +V +L ++D D Y N G T L A G + +
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKC 117
Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFY 196
V LL ++ E +G T + A Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 44/158 (27%)
Query: 45 HINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL 104
H++++ Q K G+ PSL ++ +G + +HLAA+FGH++IV++LI + +
Sbjct: 88 HLSMVVQLMKYGAD----------PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 105 A-----------AWQMMR----------MTNN---------EKNTALHEAVCHGNVQVVK 134
W R +T N KNTALH AV GN V+
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
+L + + ++N G+++L +A + + M+ L E
Sbjct: 195 LLLEAGANVD-AQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD 140
T LH AA ++V + I + + ++ + +T LH A G++ +V L K
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVD----QLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 141 PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND 200
D P + G + +++AA+ ++ +V L+ V NG T L AA + +
Sbjct: 100 AD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 201 -------QTAADIADKDRKMTALHLAAGQGHARTVETIL 232
+ ++ DK K TALH A G+ + +L
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 46/223 (20%)
Query: 70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
SL + + T LH A GH+ IV FL++ + + N+K+ A LH A
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
G ++VK L + + + N+ G T L+ AA E+ + LLE + P+ K
Sbjct: 82 SAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
H+ TA+H AA +G+ + V +LF + D
Sbjct: 136 D-------HY----------------DATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
G LH A ++ E K L+ + IY + TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
D++ A D+D + TALH A GH VE +L L + D GW+ LH A + +
Sbjct: 29 DKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRD 86
Query: 260 HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI----------KVRYDAGGN 309
+K LL + + + + NG TPLH A+ E + K YDA
Sbjct: 87 EIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 310 YGAVNKQNVSVTDVLIY 326
+ A K N+ + +L++
Sbjct: 144 HRAAAKGNLKMVHILLF 160
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCP 69
N A +G + K +D+ + T Q T LH + G T+ + +L+
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-----GHTEIVEFLLQ--- 61
Query: 70 SLLLQVNAKGD---TPLHLAAKFGHSNIV-SFLIERAKLAAWQMMRMTNNEKNTALHEAV 125
L + VN K D +PLH+AA G IV + L++ A + A N T LH A
Sbjct: 62 -LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA------VNQNGCTPLHYAA 114
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
++ +L + + P +++ Y T+++ AA +MV LL S + + G
Sbjct: 115 SKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Query: 186 TALHAA 191
T LH A
Sbjct: 174 TPLHLA 179
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 89 FGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE- 147
+S + L ER LA + T+ + TALH A G+ ++V+ L + P ++
Sbjct: 13 LAYSGKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDK 69
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIA 207
+ G + L++AA E+V LL V+ NG T LH AA
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA--------------- 114
Query: 208 DKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK 267
K+R A+ L G + D K DH +H A L + ILL
Sbjct: 115 SKNRHEIAVMLLEGGANP---------DAK-----DHYDATAMHRAAAKGNLKMVHILLF 160
Query: 268 NPLARSLIYEGDNNGNTPLHV 288
+ ++ D GNTPLH+
Sbjct: 161 YKASTNI---QDTEGNTPLHL 178
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 46/223 (20%)
Query: 70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
SL + + T LH A GH+ IV FL++ + + N+K+ A LH A
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
G ++VK L + + + N+ G T L+ AA E+ + LLE + P+ K
Sbjct: 82 SAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
H+ TA+H AA +G+ + V +LF + D
Sbjct: 136 D-------HY----------------DATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
G LH A ++ E K L+ + IY + TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
D++ A D+D + TALH A GH VE +L L + D GW+ LH A +
Sbjct: 29 DKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXD 86
Query: 260 HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI----------KVRYDAGGN 309
+K LL + + + + NG TPLH A+ E + K YDA
Sbjct: 87 EIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 310 YGAVNKQNVSVTDVLIY 326
+ A K N+ + +L++
Sbjct: 144 HRAAAKGNLKMVHILLF 160
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCP 69
N A +G + K +D+ + T Q T LH + G T+ + +L+
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-----GHTEIVEFLLQ--- 61
Query: 70 SLLLQVNAKGD---TPLHLAAKFGHSNIV-SFLIERAKLAAWQMMRMTNNEKNTALHEAV 125
L + VN K D +PLH+AA G IV + L++ A + A N T LH A
Sbjct: 62 -LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA------VNQNGCTPLHYAA 114
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
++ +L + + P +++ Y T+++ AA +MV LL S + + G
Sbjct: 115 SKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Query: 186 TALHAA 191
T LH A
Sbjct: 174 TPLHLA 179
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 89 FGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE- 147
+S + L ER LA + T+ + TALH A G+ ++V+ L + P ++
Sbjct: 13 LAYSGKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDK 69
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIA 207
+ G + L++AA E+V LL V+ NG T LH AA
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--------------- 114
Query: 208 DKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK 267
K+R A+ L G + D K DH +H A L + ILL
Sbjct: 115 SKNRHEIAVMLLEGGANP---------DAK-----DHYDATAMHRAAAKGNLKMVHILLF 160
Query: 268 NPLARSLIYEGDNNGNTPLHV 288
+ ++ D GNTPLH+
Sbjct: 161 YKASTNI---QDTEGNTPLHL 178
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 46/223 (20%)
Query: 70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
SL + + T LH A GH+ IV FL++ + + N+K+ A LH A
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 82
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
G ++VK L + + N+ G T L+ AA E+ + LLE + P+ K
Sbjct: 83 SAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 136
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
H+ + TA+H AA +G+ + + +L+ + D
Sbjct: 137 D-------HY----------------EATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 172
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
G LH A ++ E K+L+ + IY + TPL V
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 212
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 34 LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFG 90
+ ++ NT LH KNG + + ++L K VNA+ G+TPLHLAAK G
Sbjct: 3 MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNG 53
Query: 91 HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
H+ IV L LA + + + NT H A +G+ ++VK+L + D
Sbjct: 54 HAEIVKLL-----LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G+TPLH AAK GH+ V L+ + + + + NT LH A +G+ ++VK+L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKG-----ADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
+ D + +K G T ++A + + E +++LL+
Sbjct: 64 KGADV-NARSKDGNTPEHLAKKNGHHE-IVKLLD 95
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 116 EKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT 175
+ NT LH A +G+ + VK L + D + +K G T L++AA+ ++E+V LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 176 SVSHEGPNGKTALHAAAMHFYFE 198
V+ +G T H A + + E
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHE 89
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 149 KYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----TAA 204
K G T L+ AA+ ++E V +LL V+ +G T LH AA + + E + A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 205 DIADKDRKM-TALHLAAGQGHARTVETILFLDPKCYELVDHRGW 247
D+ + + T HLA GH E + LD K + V+ R W
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHH---EIVKLLDAKGAD-VNARSW 106
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 46/223 (20%)
Query: 70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
SL + + T LH A GH+ IV FL++ + + N+K+ A LH A
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
G ++VK L + + N+ G T L+ AA E+ + LLE + P+ K
Sbjct: 82 SAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
H+ + TA+H AA +G+ + + +L+ + D
Sbjct: 136 D-------HY----------------EATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
G LH A ++ E K+L+ + IY + TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 211
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
+ + GDTPLH+A G+ V L+ + + + + NN + T LH AV VV
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVV 62
Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT--SVSHEGPN--GKTALH 189
++L P + +++G+T+ ++A E R + LL++ ++ E N G TALH
Sbjct: 63 RLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 190 AA 191
A
Sbjct: 122 VA 123
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 74 QVNAKGD---TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNA D TPLHLAAK GH IV L++ + +++ T LH A G++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-----DVNASDSWGRTPLHLAATVGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMA 158
++V++L + D +++K+GKT+ ++
Sbjct: 94 EIVEVLLEYGADV-NAQDKFGKTAFDIS 120
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++ G TPLHLAA GH IV L+E Q + TA
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-----DKFGKTA 116
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 117 FDISIDNGNEDLAEILQK 134
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA+ + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 181 GPNGKTALHAAAMHFYFE 198
G+T LH AA + E
Sbjct: 77 DSWGRTPLHLAATVGHLE 94
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----A 203
+ GK L G+ E+ I L+ N V+ G T LH AA + E +
Sbjct: 12 SDLGKKLLEATRAGQDDEVRI-LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 204 ADIADKDR-KMTALHLAAGQGHARTVETIL 232
AD+ D T LHLAA GH VE +L
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
IL + +D G LH A L +++LLK+ + + D+ G TPLH+ A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNASDSWGRTPLHLAA 88
Query: 291 AIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
+ E ++ + Y G + A +K + D+ I E
Sbjct: 89 TVGHLEIVEVLLEY--GADVNAQDKFGKTAFDISIDNGNE 126
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 60 FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
I + + + SL Q + G T LHLAA + S+ L+E + A Q +N T
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-----DNMGRT 92
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
LH AV V +IL + + G T L +AA M+ +L+ + V+
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
GK+ALH AAA++ + A+KD R+ T L LAA +G T + +L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 51 QKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM 110
+ ++ + + I ++L + L ++ G+T LHLAA+F ++ L++ A Q
Sbjct: 23 ENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-- 80
Query: 111 RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIEL 170
+N T LH AV + V +IL + + G T L +AA MV +L
Sbjct: 81 ---DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 171 LENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADI---------ADKDRKMTALHLAAG 221
+ ++ +GKTALH AA N+ A +I A D+ T L LAA
Sbjct: 138 ITADADINAADNSGKTALHWAAA----VNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 222 QG 223
+G
Sbjct: 194 EG 195
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
NNE +TA QV+ L Q + + +K G+TSL++AA ++ LL+
Sbjct: 24 NNEDSTA----------QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 73
Query: 174 CTSVSHEGPNGKTALHAA----AMHFY---FENDQTAADIADKDRKMTALHLAAGQGHAR 226
+ + G+T LHAA AM + N T + D T L LAA
Sbjct: 74 GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD-GTTPLILAARLAIEG 132
Query: 227 TVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPL 286
VE ++ D D+ G LH+A + ILL + R D+ TPL
Sbjct: 133 MVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPL 188
Query: 287 HVLA 290
+ A
Sbjct: 189 FLAA 192
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
Q A G+T LH+AA + + L+E A ++ M E TALH AV + NV +V
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 134 KILTKQDPDY------------PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
+ L + P++ YG+ L AA E+V L+E+ + +
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Query: 182 PNGKTALH 189
G T LH
Sbjct: 152 SLGNTVLH 159
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 152 KTSLYMAAEGRYSEMVIELL--ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADK 209
++ L +AA+ + + +LL E C V G G+TALH AA+ ++N + A + +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAAL---YDNLEAAMVLMEA 59
Query: 210 DRKM-------------TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVS 256
++ TALH+A + V +L +++ + ++
Sbjct: 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119
Query: 257 FKLHELKI---LLKNPLARSLIYEG------DNNGNTPLHVLAAIRPKEF----FKIKVR 303
+ H L + + R LI G D+ GNT LH+L K F + + +
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 304 YDAG 307
YD G
Sbjct: 180 YDGG 183
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 74 QVNAKGD---TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
VNA D TPLHLAAK GH IV L++ + ++ T LH A G++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-----DVNASDIWGRTPLHLAATVGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
++V++L + D +++K+GKT+ ++ +
Sbjct: 94 EIVEVLLEYGADV-NAQDKFGKTAFDISID 122
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 54 KNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM 110
K G + + +LK VNA G TPLHLAA GH IV L+E Q
Sbjct: 56 KRGHLEIVEVLLKHGAD----VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-- 109
Query: 111 RMTNNEKNTALHEAVCHGNVQVVKILTK 138
+ TA ++ +GN + +IL K
Sbjct: 110 ---DKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE--------- 198
+ GK L G+ E+ I L+ N V+ G T LH AA + E
Sbjct: 12 SDLGKKLLEATRAGQDDEVRI-LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 199 NDQTAADIADKDRKMTALHLAAGQGHARTVETIL 232
D A+DI + T LHLAA GH VE +L
Sbjct: 71 ADVNASDIWGR----TPLHLAATVGHLEIVEVLL 100
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA+ + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 181 GPNGKTALHAAAMHFYFE 198
G+T LH AA + E
Sbjct: 77 DIWGRTPLHLAATVGHLE 94
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 74 QVNAKGD---TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
VNA D TPLHLAAK GH IV L++ A + A + T LH A G+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
+++V++L + D +++K+GKT+ ++ +
Sbjct: 93 LEIVEVLLEYGADV-NAQDKFGKTAFDISID 122
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 54 KNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM 110
K G + + +LK VNA+ G TPLHLAA GH IV L+E Q
Sbjct: 56 KRGHLEIVEVLLKHGAD----VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-- 109
Query: 111 RMTNNEKNTALHEAVCHGNVQVVKILTK 138
+ TA ++ +GN + +IL K
Sbjct: 110 ---DKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----A 203
+ GK L G+ E+ I L+ N V+ G T LH AA + E +
Sbjct: 12 SDLGKKLLEATRAGQDDEVRI-LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 204 ADIADKD-RKMTALHLAAGQGHARTVETIL 232
AD+ +D T LHLAA GH VE +L
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++ G T L++AA+ + E+V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 181 GPNGKTALHAAAMHFYFE 198
G+T LH AA + E
Sbjct: 77 DIWGRTPLHLAATVGHLE 94
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L A G+VQ V+ L ++ +P + N++GKT+L + G + + +ELL+ S + +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 72
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRKMT-ALHLAAGQGHARTVETILFLD 235
+G + +H AA + + + AD+ D + +HLA +GH+ V FL
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS---FLA 129
Query: 236 PK 237
P+
Sbjct: 130 PE 131
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKL 104
+++ G P+HLA + GHS++VSFL + L
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFLAPESDL 134
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 4 ISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGE 63
+ + AAA GD + +R + + + T L + + GS E
Sbjct: 8 VCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSPAVALE 61
Query: 64 MLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
+LK+ S +Q +A G +P+H AA+ G + + L+E A + A ++ + +H
Sbjct: 62 LLKQGASPNVQ-DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL------DSTGSLPIH 114
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
A+ G+ VV L + D + + G T L +A + R ++ ++++L+
Sbjct: 115 LAIREGHSSVVSFLAPES-DL-HHRDASGLTPLELARQ-RGAQNLMDILQG 162
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L A G+VQ V+ L ++ +P + N++GKT+L + G + + +ELL+ S + +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 70
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRKMT-ALHLAAGQGHARTVETILFLD 235
+G + +H AA + + + AD+ D + +HLA +GH+ V FL
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS---FLA 127
Query: 236 PK 237
P+
Sbjct: 128 PE 129
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKL 104
+++ G P+HLA + GHS++VSFL + L
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFLAPESDL 132
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 4 ISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGE 63
+ + AAA GD + +R + + + T L + + GS E
Sbjct: 6 VCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSPAVALE 59
Query: 64 MLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
+LK+ S +Q +A G +P+H AA+ G + + L+E A + A ++ + +H
Sbjct: 60 LLKQGASPNVQ-DASGTSPVHDAARTGFLDTLKVLVEHGADVNAL------DSTGSLPIH 112
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
A+ G+ VV L + D + + G T L +A + R ++ ++++L+
Sbjct: 113 LAIREGHSSVVSFLAPES-DL-HHRDASGLTPLELARQ-RGAQNLMDILQG 160
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +E+K G T L++AA + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 181 GPNGKTALHAAAMHFYFE 198
G+T LH AM+ + E
Sbjct: 77 DAIGETPLHLVAMYGHLE 94
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
VNA+ G TPLHLAA H IV L++ A + A + T LH +G+
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI------GETPLHLVAMYGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTS 154
+++V++L K D +++K+GKT+
Sbjct: 93 LEIVEVLLKHGADV-NAQDKFGKTA 116
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + ++A G+TPLHL A +GH IV L++ Q + TA
Sbjct: 62 IVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ-----DKFGKTA 116
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 117 FDISIDNGNEDLAEILQK 134
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
GK L A G+ E+ I L+ N V+ E G T LH AAM+ + E + AD
Sbjct: 14 LGKKLLEAARAGQDDEVRI-LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 206 IADKDR-KMTALHLAAGQGHARTVETIL 232
+ D T LHL A GH VE +L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV 302
D G LH A ++ L +++LLKN + I D G TPLH++A E ++ +
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI---DAIGETPLHLVAMYGHLEIVEVLL 100
Query: 303 RYDAGGNYGAVNKQNVSVTDVLIYGSRE 330
++ G + A +K + D+ I E
Sbjct: 101 KH--GADVNAQDKFGKTAFDISIDNGNE 126
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L A G+VQ V+ L ++ +P + N++GKT+L + G + + +ELL+ S + +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNVQ 70
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKD-RKMTALHLAAGQGHARTV 228
+G + +H AA + + + AD+ D +HLA +GH V
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 12 NAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSL 71
AAA GD + +R + + + T L + + GST E+LK+ S
Sbjct: 14 GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELLKQGASP 67
Query: 72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
+Q + G +P+H AA+ G + + L+E + + + +H AV G+
Sbjct: 68 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGALPIHLAVQEGHTA 121
Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
VV L + D + + G T L +A + R ++ ++++L+
Sbjct: 122 VVSFLAAES-DL-HRRDARGLTPLELALQ-RGAQDLVDILQG 160
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L A G+VQ V+ L ++ +P + N++GKT+L + G + + +ELL+ S + +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNVQ 64
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKD-RKMTALHLAAGQGHARTVETILFLD 235
+G + +H AA + + + AD+ D +HLA +GH V + L +
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAE 123
Query: 236 PKCYELVDHRGWNFLHYAM 254
+ D RG L A+
Sbjct: 124 SDLHRR-DARGLTPLELAL 141
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 12 NAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSL 71
AAA GD + +R + + + T L + + GST E+LK+ S
Sbjct: 8 GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELLKQGASP 61
Query: 72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
+Q + G +P+H AA+ G + + L+E + + + +H AV G+
Sbjct: 62 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGALPIHLAVQEGHTA 115
Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
VV L + D + + G T L +A + R ++ ++++L+
Sbjct: 116 VVSFLAAES-DL-HRRDARGLTPLELALQ-RGAQDLVDILQG 154
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 74 QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
VNAK G TPL+LA GH IV L++ A + A + T LH A G+
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF------TPLHLAAFIGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
+++ ++L K D +++K+GKT+ ++ G +E + E+L+
Sbjct: 93 LEIAEVLLKHGADVN-AQDKFGKTAFDISI-GNGNEDLAEILQ 133
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D ++++YG T LY+A + E+V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETI 231
G T LH AA + E + AD+ +D+ TA ++ G G+ E +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 61 IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
I E+L K + + V+A G TPLHLAA GH I L++ Q + TA
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-----DKFGKTA 116
Query: 121 LHEAVCHGNVQVVKILTK 138
++ +GN + +IL K
Sbjct: 117 FDISIGNGNEDLAEILQK 134
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
GK L A G+ E+ I L+ N V+ + G T L+ A H + E + AD+
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 207 ADKDR-KMTALHLAAGQGHARTVETIL 232
D T LHLAA GH E +L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 40/179 (22%)
Query: 57 STKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERA-------------- 102
TK + E+L+ + +V+ +G+TPL++A I LI+R
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 103 ---------KLAAWQMMRMT------NNEKNTALHEAVCHGNVQVVKILT---KQDPDYP 144
++ A+ + T N AL A G++ VK+L ++D D+
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF- 135
Query: 145 YSENKYGKTSLYMAA---EGR--YSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+N +G T+L A EG Y ++V L+EN S + +G+TA+ A Y E
Sbjct: 136 --QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 56 GSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNN 115
G T+ + MLK L + N G L AA+ GH + V L+E + + + N+
Sbjct: 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR----EDIDFQND 138
Query: 116 EKNTALHEAVC--HGN---VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM 166
TAL EAV GN +VK+L + D +N G+T++ A + Y+E+
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS-GRTAMDYANQKGYTEI 193
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 63 EMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTAL 121
EML + + +N DTPLHLAA GH +IV L++ +A + A N N L
Sbjct: 51 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA------VNEHGNVPL 104
Query: 122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
H A G QV + L NKYG+ +
Sbjct: 105 HYACFWGQDQVAEDLVANGALVSIC-NKYGEMPV 137
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 63 EMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTAL 121
EML + + +N DTPLHLAA GH +IV L++ +A + A N N L
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA------VNEHGNVPL 109
Query: 122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
H A G QV + L NKYG+ +
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSIC-NKYGEMPV 142
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 9 NFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKC 68
+ AA D K+ T + EI + Q+ T LH + S K K + E+L +
Sbjct: 181 SLLQAAREADLAKVKK-TLALEIINFKQPQSHETALHCAVASLHPKR---KQVAELLLRK 236
Query: 69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG 128
+ + + N TPLH+AA+ H++++ L + M ++ TALH A G
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA-----KMNALDSLGQTALHRAALAG 291
Query: 129 NVQVVKILTKQDPD 142
++Q ++L D
Sbjct: 292 HLQTCRLLLSYGSD 305
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 91/253 (35%), Gaps = 69/253 (27%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAK----------------------------LAAW 107
+ + TPLHLAA + IV L++ L
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 108 QMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSE-- 165
+ + + T LHEA V+V +L D P N +GK+++ MA E
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERL 173
Query: 166 ------------------------MVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ 201
+ +E++ SHE TALH A + + Q
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE-----TALHCAVASLHPKRKQ 228
Query: 202 TA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYA 253
A A++ +K++ MT LH+AA + H +E + K L D G LH A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRA 287
Query: 254 MVSFKLHELKILL 266
++ L ++LL
Sbjct: 288 ALAGHLQTCRLLL 300
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 107 WQM-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSE 165
W++ + N + +T LH AV H + ++V++L D E G+T L++A E + +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 166 MVIELL 171
V+ELL
Sbjct: 207 -VLELL 211
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 50/260 (19%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
V GDT LHLA H + FL+ + A + + + N+ TALH A G V+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL------ 188
L +E + G T+L++A R LL+ SH T L
Sbjct: 63 KLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQ--PRPSHPRDASDTYLTQSQDC 119
Query: 189 -----HAAAMHFYFENDQTAADIADKDRKM----------TALHLAAGQGHARTVETILF 233
HA A N + + D+D ++ T LH+A A V +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 234 L-------DPKCYELVDHRGWNFLHYAMVSFKLHELKILLK---NPLARSLIYEGDNNGN 283
+P C G LH A+ + L++LLK +P AR +Y G
Sbjct: 180 AGADLNKPEPTC-------GRTPLHLAVEAQAASVLELLLKAGADPTAR--MY----GGR 226
Query: 284 TPLHVLAAIRPKEFFKIKVR 303
TPL A +RP +R
Sbjct: 227 TPLGS-ALLRPNPILARLLR 245
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 107 WQM-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSE 165
W++ + N + +T LH AV H + ++V++L D E G+T L++A E + +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 166 MVIELL 171
V+ELL
Sbjct: 207 -VLELL 211
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 50/260 (19%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
V GDT LHLA H + FL+ + A + + + N+ TALH A G V+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL------ 188
L +E + G T+L++A R LL+ SH T L
Sbjct: 63 KLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQ--PRPSHPRDASDTYLTQSQDC 119
Query: 189 -----HAAAMHFYFENDQTAADIADKDRKM----------TALHLAAGQGHARTVETILF 233
HA A N + + D+D ++ T LH+A A V +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 234 L-------DPKCYELVDHRGWNFLHYAMVSFKLHELKILLK---NPLARSLIYEGDNNGN 283
+P C G LH A+ + L++LLK +P AR +Y G
Sbjct: 180 AGADLNKPEPTC-------GRTPLHLAVEAQAASVLELLLKAGADPTAR--MY----GGR 226
Query: 284 TPLHVLAAIRPKEFFKIKVR 303
TPL A +RP +R
Sbjct: 227 TPLGS-ALLRPNPILARLLR 245
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
G TPLH A GH +V L++ L + T + ++ LH+A +G+V +VK+L
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKAL-----VNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 211 RKMTALHLAAGQGHARTVETIL--FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN 268
R T LH+A+ +G +VE +L DP + DH GW LH A L +++LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 269 PLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVN 314
++L+ ++PLH A + K+ + Y A N AVN
Sbjct: 66 ---KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN--AVN 106
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAK------LAAWQMMRMTNNEKNTALHEAVCHGN 129
N +G+T LH+A+ G V +L++ A W T LHEA HG+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-----------TPLHEACNHGH 55
Query: 130 VQVVKILTKQ 139
++VV++L +
Sbjct: 56 LKVVELLLQH 65
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 67 KCPSLLLQ----VNAKG---DTPLHLAAKFGHSNIVSFLI 99
K LLLQ VN G D+PLH AAK GH +IV L+
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
TN+ T LH A G++ V+ L + D P ++ G T L+ A + ++V LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 172 ENCTSVSHEGPNGKTALHAAA 192
++ V+ G + LH AA
Sbjct: 64 QHKALVNTTGYQNDSPLHDAA 84
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 94 IVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKT 153
+V+F A+L + ++ + ++ NTALH +V H N VV+ L +N+ G +
Sbjct: 89 LVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS 147
Query: 154 SLYMAAEGRYS-----EMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----TAA 204
+ + A E V++L + G+TAL A H + + A
Sbjct: 148 PIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEA 207
Query: 205 DI-ADKDRKMTALHLAAGQGHARTVETILFLDPKC-YELVDHRGWNFLHYAM 254
D+ D TAL A GH + + +L P C L D G L A+
Sbjct: 208 DVNVQDDDGSTALMCACEHGH-KEIAGLLLAVPSCDISLTDRDGSTALMVAL 258
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
+TP AA+ +S L+E + A + TAL G+ + V++L +
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA 98
Query: 140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
D + + + G T+L+MAA E+V L+E + E G TAL A
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND-------QTAA 204
+T + AA + + +LLE+ V NG+TAL A +D + A
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVA---GLGSDKCVRLLAEAGA 100
Query: 205 DIADKDRK--MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYA 253
D+ +D + +TALH+AAG VE ++ L E+ D RG L A
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
+TP AA+ +S L+E + A + TAL G+ + V++L +
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA 99
Query: 140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
D + + + G T+L+MAA E+V L+E + E G TAL A
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND-------QTAA 204
+T + AA + + +LLE+ V NG+TAL A +D + A
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAG---LGSDKCVRLLAEAGA 101
Query: 205 DIADKDRK--MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYA 253
D+ +D + +TALH+AAG VE ++ L E+ D RG L A
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
N +G+TPL +A+K+G S IV L+E A ++A + + TA A G +V+K
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL------TAEASARIFGRQEVIK 184
Query: 135 ILTK 138
I T+
Sbjct: 185 IFTE 188
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD 140
TPL +A G N + L+E + + + E +TAL AV + + + + L +
Sbjct: 37 TPLMVACMLGMENAIDKLVEN-----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 141 PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
+ +++ GKT L + YSEM LLE+ +V+ G+T L A+ +
Sbjct: 92 SNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
PLH AA + IV L+ + L Q +++ NTAL+ AV GN Q VK+ K++
Sbjct: 65 PLHQAATLEDTKIVKILL-FSGLDDSQF----DDKGNTALYYAVDSGNXQTVKLFVKKNW 119
Query: 142 DYPYSENKYGKTSLYMAA 159
+ KTS Y A
Sbjct: 120 RLXFYGKTGWKTSFYHAV 137
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 75 VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
VNAK G TPLHLAA+ GH IV L L A + + TA ++ +GN
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAQDKFGKTAFDISIDNGNED 82
Query: 132 VVKILTK 138
+ +IL K
Sbjct: 83 LAEILQK 89
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 52 KRKNGSTKFIGEMLKKCPSLLLQVNAKGD----------TPLHLAAKFGHSNIVSFLIER 101
++KNG+T FI + LL +KG T AA +G + FL +R
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Query: 102 AKLAAWQMMRMTNNEKN-------TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
A + R T ++ TAL +A G+V+V+KIL + + + G+ +
Sbjct: 148 G--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 205
Query: 155 L---YMAAEGRYSEMVIE-LLENCTSVSHEGPNGKTAL-------HAAAMHFYFENDQTA 203
L ++++ E + LL++ V+ G GKT L H + E +
Sbjct: 206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265
Query: 204 ADIADKDRKMTALHLA 219
+ D D K TAL LA
Sbjct: 266 INDTDSDGK-TALLLA 280
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+ PLHLAAK GH +V FL++ + N++ +TA A +G +VV ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
+G+T+L + G E+ LL + + G +H AA + + QT AD
Sbjct: 37 FGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 206 IADKDRKMT-ALHLAAGQGHARTVETILFLDPKCYELVDHR 245
+ +D + LHLAA +GH R VE FL V HR
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVE---FLVKHTASNVGHR 133
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 83 LHLAAKFGHSNIVSFLIERAKLAAWQM-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
+H AA+ G + + L+E +Q + + +NE N LH A G+++VV+ L K
Sbjct: 74 IHDAARAGFLDTLQTLLE------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 142 DYPYSENKYGKTSLYMA 158
N G T+ +A
Sbjct: 128 SNVGHRNHKGDTACDLA 144
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+ PLHLAAK GH +V FL++ + N++ +TA A +G +VV ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
L L +L D G+ +H A + L L+ LL+N ++ + DN GN PLH+ A
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEN---QADVNIEDNEGNLPLHLAAK 112
Query: 292 ---IRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL-IYGSRELT 332
+R EF V++ A N G N + + D+ +YG E+
Sbjct: 113 EGHLRVVEFL---VKHTA-SNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
+G+T+L + G E+ LL + + G +H AA + + QT AD
Sbjct: 37 FGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 206 IADKDRKMT-ALHLAAGQGHARTVETILFLDPKCYELVDHR 245
+ +D + LHLAA +GH R VE FL V HR
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVE---FLVKHTASNVGHR 133
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 83 LHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
+H AA+ G + + L+E + + +NE N LH A G+++VV+ L K
Sbjct: 74 IHDAARAGFLDTLQTLLENQA-----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 143 YPYSENKYGKTSLYMA 158
N G T+ +A
Sbjct: 129 NVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+ PLHLAAK GH +V FL++ + N++ +TA A +G +VV ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
+G+T+L + G E+ LL + + G +H AA + + QT AD
Sbjct: 37 FGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 206 IADKDRKMT-ALHLAAGQGHARTVETILFLDPKCYELVDHR 245
+ +D + LHLAA +GH R VE FL V HR
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVE---FLVKHTASNVGHR 133
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQM-MRMTNNEKNTALHEAVCHGNVQVVKILT 137
G+ +H AA+ G + + L+E +Q + + +NE N LH A G+++VV+ L
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLE------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 138 KQDPDYPYSENKYGKTSLYMA 158
K N G T+ +A
Sbjct: 124 KHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+ PLHLAAK GH +V FL++ + N++ +TA A +G +VV ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AAD 205
+G+T+L + G E+ LL + + G +H AA + + QT AD
Sbjct: 37 FGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 206 IADKDRKMT-ALHLAAGQGHARTVETILFLDPKCYELVDHR 245
+ +D + LHLAA +GH R VE FL V HR
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVE---FLVKHTASNVGHR 133
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 83 LHLAAKFGHSNIVSFLIERAKLAAWQM-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
+H AA+ G + + L+E +Q + + +NE N LH A G+++VV+ L K
Sbjct: 74 IHDAARAGFLDTLQTLLE------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 142 DYPYSENKYGKTSLYMA 158
N G T+ +A
Sbjct: 128 SNVGHRNHKGDTACDLA 144
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
+G+ PLHLAAK GH +V FL++ + N++ +TA A +G +VV ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
L L +L D G+ +H A + +L L+ LL+ ++ + DN GN PLH+ A
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLE---FQADVNIEDNEGNLPLHLAAK 112
Query: 292 ---IRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL-IYGSRELT 332
+R EF V++ A N G N + + D+ +YG E+
Sbjct: 113 EGHLRVVEFL---VKHTA-SNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 83 LHLAAKFGHSNIVSFLIERAKLAAWQM-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
+H AA+ G + + L+E +Q + + +NE N LH A G+++VV+ L K
Sbjct: 74 IHDAARAGQLDTLQTLLE------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 142 DYPYSENKYGKTSLYMA 158
N G T+ +A
Sbjct: 128 SNVGHRNHKGDTACDLA 144
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG 128
PSL N +G T LH A GH+ IV FL++ + +++ T LH A
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQFGV-----NVNAADSDGWTPLHCAASCN 114
Query: 129 NVQVVKILTK 138
NVQV K L +
Sbjct: 115 NVQVCKFLVE 124
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
+ N+E TALH AVC G+ ++VK L + + +++ G T L+ AA ++ L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLV 123
Query: 172 ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAAD 205
E+ AA + + QTAAD
Sbjct: 124 ES---------------GAAVFAMTYSDMQTAAD 142
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG 128
PSL N +G T LH A GH+ IV FL++ + +++ T LH A
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQFGV-----NVNAADSDGWTPLHCAASCN 114
Query: 129 NVQVVKILTK 138
NVQV K L +
Sbjct: 115 NVQVCKFLVE 124
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
+ N+E TALH AVC G+ ++VK L + + +++ G T L+ AA ++ L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLV 123
Query: 172 ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAAD 205
E+ AA + + QTAAD
Sbjct: 124 ES---------------GAAVFAMTYSDMQTAAD 142
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 52 KRKNGSTKFIGEMLKKCPSLLLQVNAKGD----------TPLHLAAKFGHSNIVSFLIER 101
++KNG+T F+ + LL +KG T AA +G + FL +R
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 102 AKLAAWQMMRMTNNEKN-------TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
A + R T ++ TAL +A G+V+V+KIL + + + G+ +
Sbjct: 128 G--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Query: 155 L---YMAAEGRYSEMVIE-LLENCTSVSHEGPNGKTAL-------HAAAMHFYFENDQTA 203
L ++++ E + LL++ V+ G GKT L H + E +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 204 ADIADKDRKMTALHLA 219
+ D D K TAL LA
Sbjct: 246 INDTDSDGK-TALLLA 260
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
G TPLHLAA+ GH +V L+E A + + TA ++ +GN + +IL
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE-----AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +++K G T L++AA + E+V LLE V+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 181 GPNGKTAL 188
GKTA
Sbjct: 69 DKFGKTAF 76
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 261 ELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSV 320
E++IL+ N + + D NG+TPLH+ A R +K+ +AG + A +K +
Sbjct: 21 EVRILMANG---ADVAAKDKNGSTPLHL--AARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 321 TDVLIYGSRE 330
D+ I E
Sbjct: 76 FDISIDNGNE 85
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY 145
AA+ G + V L+ A + + +T LH A +G+++VVK+L + D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-----DKNGSTPLHLAARNGHLEVVKLLLEAGADV-N 66
Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLE 172
+++K+GKT+ ++ + +E + E+L+
Sbjct: 67 AQDKFGKTAFDISID-NGNEDLAEILQ 92
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
GK L A G+ E+ I L+ N V+ + NG T LH AA + + E
Sbjct: 6 LGKKLLEAARAGQDDEVRI-LMANGADVAAKDKNGSTPLHLAARNGHLE 53
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
V A TPL A G + V+ L++ A+ Q ++ + +HEA G+V+ V
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHG--ASVQ----PESDLASPIHEAARRGHVECVN 118
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
L + + + G T LY+A E + V +LLE+ V+ +G + LHA A
Sbjct: 119 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVA 174
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD 140
+P+H AA GH + LI + W + +T + + LHEA G++ VKIL K
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHV-SPLHEACLGGHLSCVKILLKHG 59
Query: 141 PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+ T L+ A + V LL++ SV E + + +H AA + E
Sbjct: 60 AQVNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVE 115
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
D PLH AAK G+ +S+L R L + + +TAL+ A G+ +V+ L Q
Sbjct: 74 DNPLHEAAKRGN---LSWL--RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ 128
Query: 140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
+NK G T+L+ AA Y+++V LL
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 64 MLKKCPSLLLQVNA---KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
L++C + VN G T L+ A GH +IV L + + + N +TA
Sbjct: 88 WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE----LNQQNKLGDTA 143
Query: 121 LHEAVCHGNVQVVKIL 136
LH A G +V++L
Sbjct: 144 LHAAAWKGYADIVQLL 159
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 56 GSTKFIGEMLKKCPSLLL-QVNAKGDTPLHLAAKFGHSNIVSFLIERA 102
G K I E L P++ L Q N GDT LH AA G+++IV L+ +
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 38/184 (20%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
TALH+A NV +VK L + + +N+ G L+ AA Y ++ L+ V
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 179 HEGPNGKTALHAAAMHFYF-----ENDQTAADIA----DKDRKM---------------- 213
G T L A E ++ DI +++R M
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193
Query: 214 -------TALHLAAGQGHARTVETILFLDPKCYE--LVDHRGWNFLHYAMVSFKLHELKI 264
TALH+AA +G+ E + L Y+ + D+ GW LH A K +I
Sbjct: 194 RHAKSGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 265 LLKN 268
L++N
Sbjct: 251 LVEN 254
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 149 KYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA-------AMHFYFEN-- 199
K G T+L++AA Y+E++ L++ V+ + +G T LHAA A EN
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 200 --------DQTAADIADKD 210
QTA D+AD+D
Sbjct: 257 DMEAVNKVGQTAFDVADED 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 124 AVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN 183
A G+ + V L ++ D Y+ N G T+L+ A +MV L+EN +++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 184 GKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTV--ETILFLDPKCYEL 241
G LHAAA Y DIA+ +L + H V E LD E
Sbjct: 106 GWIPLHAAASCGYL-------DIAE--------YLISQGAHVGAVNSEGDTPLDIAEEEA 150
Query: 242 VDHRGWNFLHYAMVSF---KLHELKILLKNPLARSLIYEGDNN-------GNTPLHVLAA 291
++ N ++ V + E +I+L++ AR + G N G T LHV AA
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRD--ARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 292 IRPKEFFK--IKVRYD 305
E K I+ RYD
Sbjct: 209 KGYTEVLKLLIQARYD 224
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+ +G TPL AA G +V FL++ ++ + +AL A G +VK+
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-----QLLGKGRESALSLACSKGYTDIVKM 87
Query: 136 LTKQDPDYPYSENKY---GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
L D N+Y G T L A G + + V LLE+ + E +G ++ A
Sbjct: 88 LLDCGVDV----NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 193 MHFY 196
Y
Sbjct: 144 ALGY 147
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+ +G TPL AA G +V FL++ ++ + +AL A G +VK+
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-----QLLGKGRESALSLACSKGYTDIVKM 103
Query: 136 LTKQDPDYPYSENKY---GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
L D N+Y G T L A G + + V LLE+ + E +G ++ A
Sbjct: 104 LLDCGVDV----NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Query: 193 MHFY 196
Y
Sbjct: 160 ALGY 163
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+ +G TPL AA G +V FL++ ++ + +AL A G +VK+
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-----QLLGKGRESALSLACSKGYTDIVKM 85
Query: 136 LTKQDPDYPYSENKY---GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
L D N+Y G T L A G + + V LLE+ + E +G ++ A
Sbjct: 86 LLDCGVDV----NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 193 MHFY 196
Y
Sbjct: 142 ALGY 145
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
+ G TPLHLAA+ GH +V L+E Q + TA ++ +GN + +I
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-----DKFGKTAFDISIDNGNEDLAEI 108
Query: 136 L 136
L
Sbjct: 109 L 109
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
L EA G V+IL D +++K G T L++AA + E+V LLE V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 181 GPNGKTAL 188
GKTA
Sbjct: 87 DKFGKTAF 94
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 178 SHEGPN-GKTALHAAAMHFYFENDQT------AADIADKDRK-MTALHLAAGQGHARTVE 229
SH G + GK L AA ++D+ AD+A KD+ T LHLAA GH V+
Sbjct: 18 SHMGSDLGKKLLEAARAG---QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 230 TIL 232
+L
Sbjct: 75 LLL 77
Score = 28.1 bits (61), Expect = 7.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 261 ELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSV 320
E++IL+ N + + D NG+TPLH+ A R +K+ +AG + A +K +
Sbjct: 39 EVRILMANG---ADVAAKDKNGSTPLHL--AARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 321 TDVLIYGSRE 330
D+ I E
Sbjct: 94 FDISIDNGNE 103
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 86 AAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYP 144
AA+ G + V L+ A +AA + +T LH A +G+++VVK+L + D
Sbjct: 31 AARAGQDDEVRILMANGADVAA------KDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 145 YSENKYGKTSL 155
+++K+GKT+
Sbjct: 85 -AQDKFGKTAF 94
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 41 NTILHINIISQKRKNGSTKFI----GEML----KKCPSLLLQ--VNAKGDTPLHLAAKFG 90
NT+LH + +TKF+ E+L K P+L L+ N KG TPL LAA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 91 HSNIVSFLIER 101
+++++++R
Sbjct: 245 KIGVLAYILQR 255
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 57 STKFIGEMLKKCPSLLLQVNAKGDTPLHLAA-KFGHSNIVS--FLIERAKLAAWQMMRMT 113
STK G+ + +++ G T L + A G + S L+E+ +
Sbjct: 221 STKLKGD--------IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 272
Query: 114 NNEK---NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIEL 170
++EK TALH A N +VK L + +++ GKT + +AA+ E+V L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 171 LENCTSV 177
++ SV
Sbjct: 333 IQQGASV 339
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 25/167 (14%)
Query: 138 KQDPDYPYSENKYGKTSLYMA----AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
K+ D + E GKT L A + GR + + L ++ N + +++
Sbjct: 31 KRLTDEEFREPSTGKTCLPKALLNLSNGRNDTIPVLL-----DIAERTGNMREFINSPFR 85
Query: 194 HFYFENDQTAADIADKDRKMTALHLAAGQG---HARTVETILFLDPKCYELVDHRGWNF- 249
Y+ QTA IA + R + L QG HA+ F PK D G+ +
Sbjct: 86 DIYYRG-QTALHIAIERRCKHYVELLVAQGADVHAQARGR--FFQPK-----DEGGYFYF 137
Query: 250 ----LHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI 292
L A + + H + L +NP ++ + D+ GNT LH L AI
Sbjct: 138 GELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAI 184
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 41 NTILH--INIISQKRKNGSTKFIGEM----LKKCPSLLLQ------VNAKGDTPLHLAAK 88
NT+LH + I R+N TKF+ +M L KC L +N G +PL +AAK
Sbjct: 175 NTVLHALVAIADNTREN--TKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAK 232
Query: 89 FGHSNIVSFLIER 101
G I +I R
Sbjct: 233 TGKIGIFQHIIRR 245
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 41 NTILH--INIISQKRKNGSTKFIGEM----LKKCPSLLLQVNAK------GDTPLHLAAK 88
NT+LH + I R+N TKF+ +M L KC L N + G +PL +AAK
Sbjct: 177 NTVLHALVAIADNTREN--TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 89 FGHSNIVSFLIER 101
G I +I R
Sbjct: 235 TGKIGIFQHIIRR 247
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
V A TPL A G + V+ L++ ++ + +HEA G+V+ V
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASV------QPESDLASPIHEAARRGHVECVN 174
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
L + + + G T LY+A E + V +LLE+ V+ +G + LHA
Sbjct: 175 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD 140
+P+H AA GH + LI + W + +T + + LHEA G++ VKIL K
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHV-SPLHEACLGGHLSCVKILLKHG 115
Query: 141 PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
+ T L+ A + V LL++ SV E + + +H AA + E
Sbjct: 116 AQVNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVE 171
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV 125
G+ PL LAA ++VS+L+E A ++ T+++ NT LH V
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPA--SLQATDSQGNTVLHALV 185
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 142 DYPYSENKYGKTSLYMAA---EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
D Y+E GKT L A + + ++ LL+ + + N + ++A Y+
Sbjct: 39 DSEYTEGSTGKTCLXKAVLNLKDGVNACILPLLQ----IDRDSGNPQPLVNAQCTDDYYR 94
Query: 199 NDQTAADIADKDRKMTALHLAAGQG---HARTVETILFLDPKCYELVDHRGWNFLHYAMV 255
+A IA + R + + L G HAR K + G L A
Sbjct: 95 G-HSALHIAIEKRSLQCVKLLVENGANVHARACGRFF---QKGQGTCFYFGELPLSLAAC 150
Query: 256 SFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI 292
+ + + LL+NP + + D+ GNT LH L I
Sbjct: 151 TKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXI 187
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
N E TALH A+C N +V L + S + +G T L+ AA + + + L+++
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 174 CTSV 177
++
Sbjct: 110 GAAI 113
>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 179
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 97 FLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLY 156
F++ +++ W+MMR N K+T HG+V K++ D + Y Y
Sbjct: 36 FVVAKSRF--WRMMREKNKVKST-------HGDVLSCKVVK----DRKLAARNYSVDIAY 82
Query: 157 MAAEGRYSEMVIELLENCTS 176
+ Y+ MV E + C +
Sbjct: 83 YSQRCGYTHMVKEFRDVCKA 102
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G PLH AA G I+ FL+ + + + T L AV G+V VK+L
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKG-----ADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Query: 139 QDPD 142
+ D
Sbjct: 95 KGAD 98
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 41 NTILHINIISQKRKNGSTKFIGEML--------KKCPSLLLQ--VNAKGDTPLHLAAKFG 90
NT+LH ++ ++ + M + CP++ L+ N +G TPL LAAK G
Sbjct: 186 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 245
Query: 91 HSNIVSFLIERAKLAAWQMM 110
I +++R +Q +
Sbjct: 246 KIEIFRHILQREFSGPYQPL 265
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 57 STKFIG----EMLKKCPSLLLQVNAKGDTPLHLAAK 88
+TKF G E+ KK P++ +Q++ TP HL+ +
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 57 STKFIG----EMLKKCPSLLLQVNAKGDTPLHLAAK 88
+TKF G E+ KK P++ +Q++ TP HL+ +
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
G PLH AA G I+ FL+ + + + T L AV G+V VK+L
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGA-----DINAPDKHHITPLLSAVYEGHVSCVKLLLS 89
Query: 139 QDPD 142
+ D
Sbjct: 90 KGAD 93
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKM 213
EGR+ ++ +EL T+ HE KT L F + DQ ADI + ++ +
Sbjct: 561 EGRFPDLTVELNRWDTAFDHEKAR-KTGLITPKAGFDSDYDQALADIRENEQSL 613
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 36 TAQTKNTILHINIISQKRKNGSTKFIGEML--------KKCPSLLLQ--VNAKGDTPLHL 85
T NT+LH ++ ++ + M + CP++ L+ N +G TPL L
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Query: 86 AAKFGHSNIVSFLIER 101
AAK G I +++R
Sbjct: 228 AAKEGKIEIFRHILQR 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,877,278
Number of Sequences: 62578
Number of extensions: 436372
Number of successful extensions: 1708
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 437
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)