BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046374
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/430 (29%), Positives = 197/430 (45%), Gaps = 56/430 (13%)
Query: 18 KVPRIFREKKAKKNCFDPFVVSIGPYHHGKPELQFMEKHKLTMAQQYVSNNLHM-LEE-- 74
+VP F K + P VVSIGPYH+G+ LQ +++HK + Q ++ +EE
Sbjct: 50 RVPESFVALNPK--AYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107
Query: 75 LYKKVLDVAKPARECYSDEDSIKKFDDKQFIRMMVLDGCFVLQFIYCFAQD---KRDLLK 131
L K V+D+ R+ YS+E +K D F MMVLDGCF+L + + D +
Sbjct: 108 LVKAVVDLEDKIRKSYSEE--LKTGHDLMF--MMVLDGCFILMVFLIMSGNIELSEDPIF 163
Query: 132 MKSNIAACVQRDLLLLENQLPFPVLKELM---SFRFSEDQWKKMLSNFVAQIRGPVKINK 188
+ + +Q DLLLLENQ+PF VL+ L S D + F + P+
Sbjct: 164 SIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLNRIAFHFF----KNPIDKEG 219
Query: 189 SFSRKAQAQADHQLIHFEDEPAHLLEVVR-------------------TQLIEKSAYTIP 229
S+ K H + HLL+++R QL E + +P
Sbjct: 220 SYWEK----------HRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVP 269
Query: 230 PPSCSDWSSYRSTKELKAVGIHFRPSKTRKFTDVTFISMFFEAFLKLPPITIDDSTESML 289
S K L+ GI FR ++++ D + L++P + D S
Sbjct: 270 SVDSKAVPLILSAKRLRLQGIKFRLRRSKE--DSILNVRLKKNKLQIPQLRFDGFISSFF 327
Query: 290 LNMVAYEACPEGPDDFGVSSYVCFMDSLIDHAEDVKELRS-KGILFNFLGSDQQVADLFN 348
LN VA+E + +++Y+ FM L+++ EDV LR+ K I+ N GS+ +V++ F
Sbjct: 328 LNCVAFEQFYTDSSN-EITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFK 386
Query: 349 QIADNL---VPNPYAYAVVKHRIEKHYKNKIKIWLAEWFHTHFSSPWTVIAFFAATFALF 405
I+ ++ V Y V K E K +W A + HTHF SPWT ++ A F +
Sbjct: 387 TISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLW-AGFRHTHFESPWTFLSSCAVLFVIL 445
Query: 406 LSAIQTYWAV 415
L+ +Q+ A+
Sbjct: 446 LTMLQSTVAI 455
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 183/451 (40%), Gaps = 97/451 (21%)
Query: 31 NCFDPFVVSIGPYHHGKPELQFMEKHKLTMAQ----QYVSNNLHMLEELYKKVLDVAKPA 86
+ + P VSIGPYH KPEL ME++KL +A+ QY S H +L +K+ +
Sbjct: 58 DSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFH---DLVEKLQSMEIKI 114
Query: 87 RECYSDEDSIKKFDDKQFIRMMVLDGCFVLQF--IYCFAQDK------------RDLLKM 132
R CY F+ + + +M +D F+++F IY F + + RD++ +
Sbjct: 115 RACYH---KYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHNEILRDIMMI 171
Query: 133 KSNIAACVQRDLLLLE-------NQLPFPVLKEL------MSFRFSEDQWKK-------- 171
++ I V R L + + L VL L + +F +DQ K
Sbjct: 172 ENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKDLSPLVIKFDDDQILKAQFQECNH 231
Query: 172 ----MLSNFVAQIRGPVKINKSFSRKAQAQADHQLIHFEDE------------PAHLL-- 213
+ V +I +A ++ I F DE PA L+
Sbjct: 232 ILDFLYQMIVPRIEEEELEEDDEENRADENGGNRAIRFMDEIKHQFKRVFASRPADLILR 291
Query: 214 ----------------------------EVVRTQLIEKSAYTIPPPSCSDWSSYRSTKEL 245
E T+ S I P + + S +L
Sbjct: 292 FPWRIISNLPGFMALKLSADYLFTRQENEATTTRQESVSILDIEKPPLVEELTIPSVSDL 351
Query: 246 KAVGIHFRPSKTRKFTDVTFISMFFEAFLKLPPITIDDSTESMLLNMVAYEAC-PEGPDD 304
G+ F+P+ + VTF S + +L P I +D +TE++L N+VAYEA GP
Sbjct: 352 HKAGVRFKPTAHGNISTVTFDSNSGQFYL--PVINLDINTETVLRNLVAYEATNTSGPLV 409
Query: 305 FGVSSYVCFMDSLIDHAEDVKELRSKGILFNFLGSDQQVADLFNQIADNLVPNPYAYA-V 363
F + Y ++ +ID EDV+ LR +G+L + L SDQ+ A+++N ++ ++ +
Sbjct: 410 F--TRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFLDK 467
Query: 364 VKHRIEKHYKNKIKIWLAEWFHTHFSSPWTV 394
+ ++Y + K+ + + W +
Sbjct: 468 TIEDVNRYYTGRWKVKIGRLVEVYVYGSWQI 498
>sp|Q9Z7T7|MNMG_CHLPN tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Chlamydia pneumoniae GN=mnmG PE=3 SV=1
Length = 611
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 36 FVVSIGPYHHGKPELQFMEKHKLTMAQQYVSNNLHMLEELYKKVLDVAKPARECYSDEDS 95
FV P+ P+L H + + +S NLH LY ++ P R C S ED
Sbjct: 227 FVHRTEPFQPPLPQLSCFITHTMEKTKAIISANLHR-SALYGGCIEGVGP-RYCPSIEDK 284
Query: 96 IKKFDDKQ 103
I KF DK+
Sbjct: 285 IVKFSDKE 292
>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein MutS OS=Nitrosomonas eutropha (strain
C91) GN=mutS PE=3 SV=1
Length = 880
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 5 HGVIDKSRKLKLEKVPRIFREKKAKKNCFDPFVVSIGPYHHGKPELQFMEKHKLTMAQQY 64
HG + ++ EK+P +R ++ KN + PELQ E LT +Q
Sbjct: 489 HGFYIEVTRIHGEKIPADYRRRQTLKNA----------ERYSIPELQVFENKTLTAREQA 538
Query: 65 VSNNLHMLEELYKKVLDVAKPARE 88
++ + E+L +++ D P +E
Sbjct: 539 LAQEKKLYEQLLEQLADFIIPLQE 562
>sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 33 FDPFVVSIGPYHHGKPE------LQFMEKHKLTMAQQYVSNNLHMLEELYKKVLDVAKPA 86
DP +G + +PE LQ H ++M Q + +++ +L E YKK L V
Sbjct: 517 MDPITRQVGQHIEMEPEWEAAFTLQMKLTHVISMMQDWCASDEKVLIEAYKKCLAVLMQC 576
Query: 87 RECYSDEDSIKKFDDKQFIRMMVLDGCFVLQFIYCFAQDK 126
Y+ D +Q I + + G V YC +Q+K
Sbjct: 577 HGGYT--------DGEQPITLSIC-GHSVETIRYCVSQEK 607
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,913,687
Number of Sequences: 539616
Number of extensions: 6271840
Number of successful extensions: 14550
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14535
Number of HSP's gapped (non-prelim): 14
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)