Query 046374
Match_columns 420
No_of_seqs 132 out of 701
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 23.9 24 0.00081 22.8 0.7 21 277-298 1-21 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 18.3 31 0.001 22.6 0.4 19 277-296 3-21 (40)
3 2kru_A Light-independent proto 17.9 40 0.0014 24.5 1.0 12 149-160 15-26 (63)
4 1v54_G Cytochrome C oxidase po 15.8 94 0.0032 23.9 2.7 24 390-413 14-37 (85)
5 2y69_G Cytochrome C oxidase po 12.7 1.3E+02 0.0043 23.7 2.7 24 390-413 26-49 (97)
6 2j6b_A AFV3-109; sulfolobus, c 12.4 1.3E+02 0.0044 24.2 2.7 33 320-353 26-58 (109)
7 1sbx_A SKI oncogene, C-SKI; wi 11.8 2.2E+02 0.0076 22.7 3.9 67 271-350 32-103 (106)
8 1pue_E Protein (transcription 11.7 2.1E+02 0.0071 22.1 3.6 36 338-375 36-71 (89)
9 2yj3_A Copper-transporting ATP 14.9 52 0.0018 29.9 0.0 90 241-333 5-100 (263)
10 2x4i_A CAG38848, uncharacteriz 11.1 2.3E+02 0.0078 22.9 3.8 33 320-353 28-60 (114)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=23.89 E-value=24 Score=22.82 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.5
Q ss_pred CceeecCchhHHHhhHHHHHhc
Q 046374 277 PPITIDDSTESMLLNMVAYEAC 298 (420)
Q Consensus 277 P~L~id~~Te~llrNLiA~Eq~ 298 (420)
||+.|| -|-.+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 777776 788999999877543
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=18.31 E-value=31 Score=22.55 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=15.6
Q ss_pred CceeecCchhHHHhhHHHHH
Q 046374 277 PPITIDDSTESMLLNMVAYE 296 (420)
Q Consensus 277 P~L~id~~Te~llrNLiA~E 296 (420)
||+.|| -|-.+||||+-..
T Consensus 3 PpiSiD-LTFHlLR~miema 21 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELA 21 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHH
Confidence 777776 7889999998765
No 3
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=17.89 E-value=40 Score=24.48 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=9.2
Q ss_pred CCCcHHHHHHHH
Q 046374 149 NQLPFPVLKELM 160 (420)
Q Consensus 149 NQIPffVL~~L~ 160 (420)
++|||||=.++=
T Consensus 15 kkIP~FVR~kvr 26 (63)
T 2kru_A 15 GKVPFFVRKKVR 26 (63)
T ss_dssp TTSCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 569999976663
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=15.84 E-value=94 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHh
Q 046374 390 SPWTVIAFFAATFALFLSAIQTYW 413 (420)
Q Consensus 390 npW~~is~~aA~~ll~lT~~QT~~ 413 (420)
.-|+-||+++|+=+++++++.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999998888888888764
No 5
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.72 E-value=1.3e+02 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHh
Q 046374 390 SPWTVIAFFAATFALFLSAIQTYW 413 (420)
Q Consensus 390 npW~~is~~aA~~ll~lT~~QT~~ 413 (420)
+-|.-||+++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999998888888888764
No 6
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=12.38 E-value=1.3e+02 Score=24.21 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=26.6
Q ss_pred CHHhHHHHHHCCcccCCCCChHHHHHHHHHhhcc
Q 046374 320 HAEDVKELRSKGILFNFLGSDQQVADLFNQIADN 353 (420)
Q Consensus 320 t~eDV~lL~~kgIi~~~lgsdeeva~lFn~L~~~ 353 (420)
|.++++.+..++-+++.-| ++..|++.|+||.-
T Consensus 26 s~~Ea~~~l~~~~~vSaIG-H~sTA~lls~Llg~ 58 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIG-HQATAELLSSILGV 58 (109)
T ss_dssp CHHHHHHHHHHSCEEECBC-SHHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccceEEeec-cHHHHHHHHHHhCC
Confidence 6777887776666778887 78999999999974
No 7
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=11.83 E-value=2.2e+02 Score=22.71 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=44.7
Q ss_pred ceEEEcCceeecCchhHHHhhHHHHHhcCCCCCCcceeeHHHHHHhhcCCHHhHHHHHHCCcccCCCC-----ChHHHHH
Q 046374 271 EAFLKLPPITIDDSTESMLLNMVAYEACPEGPDDFGVSSYVCFMDSLIDHAEDVKELRSKGILFNFLG-----SDQQVAD 345 (420)
Q Consensus 271 ~g~L~IP~L~id~~Te~llrNLiA~Eq~~~~~~~~~vtsYv~fM~~LI~t~eDV~lL~~kgIi~~~lg-----sdeeva~ 345 (420)
...|-+|++ -+.+|+|+. +.|-+.......++ +-.+|+|-++.|+..|+|...-. +-+++..
T Consensus 32 e~rlCLPQi-----~~~~Lk~~~-l~~I~~~~~~L~I~-------~~~Ct~eQl~~Lk~~g~ip~~a~~CgLItk~Daer 98 (106)
T 1sbx_A 32 EKRLCLPQI-----LNSVLRDFS-LQQINAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAER 98 (106)
T ss_dssp EEEEEHHHH-----HTTTTTTSC-HHHHHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHH
T ss_pred EEEEehHHH-----HHHHHHhCC-HHHHHHHHHHhCcc-------cccCCHHHHHHHHHcCccCCCCcccCceeHHHHHH
Confidence 466889998 566778876 55443222222232 23589999999999999987643 4567777
Q ss_pred HHHHh
Q 046374 346 LFNQI 350 (420)
Q Consensus 346 lFn~L 350 (420)
+.+.+
T Consensus 99 L~~~l 103 (106)
T 1sbx_A 99 LCNAL 103 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 8
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=11.67 E-value=2.1e+02 Score=22.09 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHhhccCCCCCcchHHHHHHHHhhccch
Q 046374 338 GSDQQVADLFNQIADNLVPNPYAYAVVKHRIEKHYKNK 375 (420)
Q Consensus 338 gsdeeva~lFn~L~~~~~~~~~~y~~v~~~l~~~~~~~ 375 (420)
-+.|+||+++-.- |+..++. .|.++.+.+.-||++.
T Consensus 36 ~~~e~VArlWG~r-K~Nk~~M-nYeKlSRaLRyYY~~~ 71 (89)
T 1pue_E 36 KHKEALAHRWGIQ-KGNRKKM-TYEKMARALRNYGKTG 71 (89)
T ss_dssp TTHHHHHHHHHHH-HTCSSCC-CHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHhhcc-cCCCCCc-CHHHHHHHHHHHHHcC
Confidence 3578999998754 4333333 3999999999998743
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=14.90 E-value=52 Score=29.92 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=53.5
Q ss_pred CHHHHHHcCCeEeeCCC----CCceeeEEeccccceEEEcCceeecCc--hhHHHhhHHHHHhcCCCCCCcceeeHHHHH
Q 046374 241 STKELKAVGIHFRPSKT----RKFTDVTFISMFFEAFLKLPPITIDDS--TESMLLNMVAYEACPEGPDDFGVSSYVCFM 314 (420)
Q Consensus 241 sAteL~~aGVkfk~~~~----~~llDi~F~~~~~~g~L~IP~L~id~~--Te~llrNLiA~Eq~~~~~~~~~vtsYv~fM 314 (420)
+...+.+.||-+|.... ..+.-|-|++ +|+|+-....+.+. .+.+++=+.++|+....+-...+..+..=.
T Consensus 5 a~~~~~~~gil~k~~~~le~l~~i~~v~fDk---tGTLT~g~~~v~~~~~~~~~l~~~~~~e~~s~hp~a~ai~~~~~~~ 81 (263)
T 2yj3_A 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFEK---TGTLTYGTPIVTQFIGDSLSLAYAASVEALSSHPIAKAIVKYAKEQ 81 (263)
Confidence 34556778998887542 3456678997 59999877777654 456677777888764333222333333211
Q ss_pred HhhcCCHHhHHHHHHCCcc
Q 046374 315 DSLIDHAEDVKELRSKGIL 333 (420)
Q Consensus 315 ~~LI~t~eDV~lL~~kgIi 333 (420)
..=..+.++++.+.-.|+-
T Consensus 82 g~~~~~~~~~~~~~G~g~~ 100 (263)
T 2yj3_A 82 GVKILEVKDFKEISGIGVR 100 (263)
Confidence 1112345667666666653
No 10
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.12 E-value=2.3e+02 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.9
Q ss_pred CHHhHHHHHHCCcccCCCCChHHHHHHHHHhhcc
Q 046374 320 HAEDVKELRSKGILFNFLGSDQQVADLFNQIADN 353 (420)
Q Consensus 320 t~eDV~lL~~kgIi~~~lgsdeeva~lFn~L~~~ 353 (420)
|.++++.+..++-+++.-| ++..|++.++||.-
T Consensus 28 s~~EAk~~v~~~~~iSaIG-H~sTA~lls~Llg~ 60 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIG-HDSTIQLINSLCGT 60 (114)
T ss_dssp CHHHHHHHHCCTTEEECCC-CHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcccCeEEeec-cHHHHHHHHHHhCC
Confidence 4677888887777778887 68999999999974
Done!