Query 046374
Match_columns 420
No_of_seqs 132 out of 701
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 20:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54g_ f.23.2.1 (G:) Mitochon 20.5 30 0.0022 24.7 2.7 24 390-413 14-37 (84)
2 d1eg3a2 a.39.1.7 (A:210-306) D 17.8 1.1E+02 0.0079 22.2 5.5 13 56-68 4-16 (97)
3 d1puee_ a.4.5.21 (E:) Transcri 13.5 80 0.0058 22.6 3.6 44 330-375 28-71 (88)
4 d1awca_ a.4.5.21 (A:) GA bindi 13.0 80 0.0059 23.5 3.6 62 338-402 32-95 (110)
5 d2outa1 a.140.3.2 (A:94-131) U 12.7 35 0.0025 19.8 1.0 15 243-257 6-20 (38)
6 d1f16a_ f.1.4.1 (A:) Proapopto 12.4 1.1E+02 0.0082 24.8 4.8 39 361-399 133-177 (192)
7 d1sbxa_ a.6.1.4 (A:) Ski oncog 11.6 1.1E+02 0.0078 22.6 3.9 66 272-350 33-103 (106)
8 d1wpga4 f.33.1.1 (A:1-124,A:24 11.5 79 0.0058 29.2 4.0 35 383-417 401-439 (472)
9 d2i4ra1 c.149.1.1 (A:4-79) V-t 10.4 70 0.0051 22.0 2.3 23 17-41 54-76 (76)
10 d1j0ta_ a.163.1.1 (A:) Mlt-inh 10.1 29 0.0021 24.5 0.1 49 346-396 3-54 (78)
No 1
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.50 E-value=30 Score=24.75 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHh
Q 046374 390 SPWTVIAFFAATFALFLSAIQTYW 413 (420)
Q Consensus 390 npW~~is~~aA~~ll~lT~~QT~~ 413 (420)
.-|+-|++++|+-+++++++.++.
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348889999999888888888764
No 2
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.85 E-value=1.1e+02 Score=22.22 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhc
Q 046374 56 HKLTMAQQYVSNN 68 (420)
Q Consensus 56 ~K~~~l~~~l~r~ 68 (420)
.|.||+=+.+.++
T Consensus 4 dKyRYlF~qisd~ 16 (97)
T d1eg3a2 4 DKYRYLFKQVASS 16 (97)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCC
Confidence 5899998888865
No 3
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.49 E-value=80 Score=22.56 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=29.1
Q ss_pred CCcccCCCCChHHHHHHHHHhhccCCCCCcchHHHHHHHHhhccch
Q 046374 330 KGILFNFLGSDQQVADLFNQIADNLVPNPYAYAVVKHRIEKHYKNK 375 (420)
Q Consensus 330 kgIi~~~lgsdeeva~lFn~L~~~~~~~~~~y~~v~~~l~~~~~~~ 375 (420)
+||..=-..+.|+||+++-.--+ ..++. .|.++.++|..||++.
T Consensus 28 ~g~F~fv~~~~e~VA~lWG~~K~-Nr~~M-nYeklSRaLRyYY~~~ 71 (88)
T d1puee_ 28 KGTFQFSSKHKEALAHRWGIQKG-NRKKM-TYEKMARALRNYGKTG 71 (88)
T ss_dssp TTEEEECTTTHHHHHHHHHHHHT-CSSCC-CHHHHHHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHhhcC-CCCCC-cHHHHHHHHHHHHhcc
Confidence 45554333356899999875532 22233 3999999999999854
No 4
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.98 E-value=80 Score=23.52 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHhhccCCCCCcchHHHHHHHHhhccchhhhHH--HHhhccccCChHHHHHHHHHHH
Q 046374 338 GSDQQVADLFNQIADNLVPNPYAYAVVKHRIEKHYKNKIKIWL--AEWFHTHFSSPWTVIAFFAATF 402 (420)
Q Consensus 338 gsdeeva~lFn~L~~~~~~~~~~y~~v~~~l~~~~~~~~~~w~--a~l~~~yf~npW~~is~~aA~~ 402 (420)
-+.++||+++- .-|+ .++. .|.++.+.+..||++..-.-. ..+.-.+..+||.+++.-++-+
T Consensus 32 ~d~e~VA~lWG-~~Kn-k~~M-~YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 32 NQPELVAQKWG-QRKN-KPTM-NYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp SSHHHHHHHHH-HHHT-CTTC-CHHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred CCHHHHHHHHH-HhhC-CCcc-cHHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 46899999995 3343 2333 499999999999986532211 2345566789999876555543
No 5
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=12.67 E-value=35 Score=19.80 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=12.1
Q ss_pred HHHHHcCCeEeeCCC
Q 046374 243 KELKAVGIHFRPSKT 257 (420)
Q Consensus 243 teL~~aGVkfk~~~~ 257 (420)
.+|-+.||.||.+.+
T Consensus 6 aqltergitfkqsat 20 (38)
T d2outa1 6 AQLTERGITFKQSAT 20 (38)
T ss_dssp HHHHHHTCCCSSSCC
T ss_pred HHHHHcCceeeccch
Confidence 478899999998754
No 6
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.38 E-value=1.1e+02 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.465 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhccchhhhHHHH-----hhccccCCh-HHHHHHHH
Q 046374 361 YAVVKHRIEKHYKNKIKIWLAE-----WFHTHFSSP-WTVIAFFA 399 (420)
Q Consensus 361 y~~v~~~l~~~~~~~~~~w~a~-----l~~~yf~np-W~~is~~a 399 (420)
...+.+-+-+|-..+...|+.. -..+||++| |..+++++
T Consensus 133 v~~i~~~~~~fl~~~l~~WI~~~GGW~g~~~~f~~~~w~~~~~~~ 177 (192)
T d1f16a_ 133 IRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFV 177 (192)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHTCSTHHHHHHCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHcCCCchHHHHHHH
Confidence 3444444444444445556532 224667655 55554433
No 7
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.56 E-value=1.1e+02 Score=22.62 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=42.2
Q ss_pred eEEEcCceeecCchhHHHhhHHHHHhcCCCCCCcceeeHHHHHHhhcCCHHhHHHHHHCCcccCCCC-----ChHHHHHH
Q 046374 272 AFLKLPPITIDDSTESMLLNMVAYEACPEGPDDFGVSSYVCFMDSLIDHAEDVKELRSKGILFNFLG-----SDQQVADL 346 (420)
Q Consensus 272 g~L~IP~L~id~~Te~llrNLiA~Eq~~~~~~~~~vtsYv~fM~~LI~t~eDV~lL~~kgIi~~~lg-----sdeeva~l 346 (420)
-.|-+|++. +.+|+|+ .+.|-+...+...++ +..+|+|-+++|+..|+|..... +-+|+..+
T Consensus 33 ~rlCLpQi~-----~~vLk~~-s~~~I~~~~~~L~I~-------~~~Ct~eQL~~Lk~~gaip~~~~~C~LItk~DaErL 99 (106)
T d1sbxa_ 33 KRLCLPQIL-----NSVLRDF-SLQQINAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAERL 99 (106)
T ss_dssp EEEEHHHHH-----TTTTTTS-CHHHHHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHH
T ss_pred EEEEhHHHH-----HHHHhhC-CHHHHHHHHHHhCce-------eccCCHHHHHHHHHcCCCCCCCCcccceeHHHHHHH
Confidence 347777763 5677776 555553222222222 23489999999999999987543 45677677
Q ss_pred HHHh
Q 046374 347 FNQI 350 (420)
Q Consensus 347 Fn~L 350 (420)
.+.+
T Consensus 100 ~~~l 103 (106)
T d1sbxa_ 100 CNAL 103 (106)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 8
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.54 E-value=79 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=22.4
Q ss_pred hhccccCChHHHHHHHHHHHHHHHH----HHhHHhhccC
Q 046374 383 WFHTHFSSPWTVIAFFAATFALFLS----AIQTYWAVKP 417 (420)
Q Consensus 383 l~~~yf~npW~~is~~aA~~ll~lT----~~QT~~sv~~ 417 (420)
+++..|+|+|.+++++.++++.++. .+|.++...|
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~p 439 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKA 439 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCC
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHcccC
Confidence 3456789999998888776554333 2555555443
No 9
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.40 E-value=70 Score=21.96 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=18.3
Q ss_pred eccCchhhhcccCCCCCCceeEeeC
Q 046374 17 EKVPRIFREKKAKKNCFDPFVVSIG 41 (420)
Q Consensus 17 ~rVP~~lr~~~~n~~aY~P~~VSIG 41 (420)
-++|+.+++ .-.+...|.++.||
T Consensus 54 ~~i~~~i~~--~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRR--EIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHT--TTTTCCSSEEEEEC
T ss_pred HHhhHHHHH--HHhcCCCCEEEecC
Confidence 367888885 45677899999998
No 10
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn (Marsupenaeus japonicus) [TaxId: 27405]}
Probab=10.10 E-value=29 Score=24.46 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHhhccCCCCCcchHHH---HHHHHhhccchhhhHHHHhhccccCChHHHHH
Q 046374 346 LFNQIADNLVPNPYAYAVV---KHRIEKHYKNKIKIWLAEWFHTHFSSPWTVIA 396 (420)
Q Consensus 346 lFn~L~~~~~~~~~~y~~v---~~~l~~~~~~~~~~w~a~l~~~yf~npW~~is 396 (420)
+|+.=|+++.-|...|.++ +++--.-|+.+ .--...+.+-|+|+|...-
T Consensus 3 ~~d~~CkGv~GdR~lf~kldrVCeDCyNlfR~p--~v~~~CR~nCF~n~~F~~C 54 (78)
T d1j0ta_ 3 FIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLP--GLDGMCRNRCFYNEWFLIC 54 (78)
T ss_dssp CSSSCCSSTTTCSSHHHHHHHHHHHHHHHHTCH--HHHHHHTSSTTCSSHHHHH
T ss_pred cccccCCCccccHHHHHHHHHHhHHhHHHhcCc--hHHHHHHHhccCCHHHHHH
Confidence 3444567665466666554 44443334332 2224567799999997543
Done!