Query 046375
Match_columns 276
No_of_seqs 123 out of 1503
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02716 C20_methyl_CrtF C-20 100.0 4E-35 8.6E-40 261.4 20.6 239 2-262 5-305 (306)
2 KOG3178 Hydroxyindole-O-methyl 100.0 3E-35 6.4E-40 257.4 17.7 267 1-275 20-342 (342)
3 PF00891 Methyltransf_2: O-met 100.0 2.1E-34 4.6E-39 248.4 14.6 173 66-240 3-176 (241)
4 TIGR02752 MenG_heptapren 2-hep 99.4 1.6E-12 3.5E-17 111.2 13.1 121 153-275 36-231 (231)
5 PF01209 Ubie_methyltran: ubiE 99.4 1.3E-13 2.7E-18 118.1 5.8 114 162-275 45-233 (233)
6 COG2226 UbiE Methylase involve 99.4 2.6E-12 5.7E-17 109.4 12.0 113 163-275 50-237 (238)
7 PLN02233 ubiquinone biosynthes 99.4 5.5E-12 1.2E-16 110.0 13.3 113 162-274 71-260 (261)
8 TIGR00740 methyltransferase, p 99.4 3.5E-13 7.7E-18 116.0 5.3 78 163-240 52-140 (239)
9 PRK14103 trans-aconitate 2-met 99.3 1.3E-11 2.9E-16 107.2 12.1 86 152-240 19-107 (255)
10 TIGR02021 BchM-ChlM magnesium 99.3 1.8E-11 3.8E-16 104.0 11.8 137 126-264 17-207 (219)
11 PRK00216 ubiE ubiquinone/menaq 99.3 5.8E-11 1.3E-15 101.5 15.0 121 153-275 42-238 (239)
12 PTZ00098 phosphoethanolamine N 99.3 1.3E-11 2.8E-16 107.8 11.1 112 151-265 41-204 (263)
13 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.9E-11 4.2E-16 109.7 12.3 103 164-266 113-259 (340)
14 PRK15451 tRNA cmo(5)U34 methyl 99.3 7.8E-12 1.7E-16 108.2 9.4 78 163-240 55-143 (247)
15 PLN02244 tocopherol O-methyltr 99.3 2.6E-11 5.7E-16 109.7 11.9 101 163-264 117-279 (340)
16 smart00828 PKS_MT Methyltransf 99.2 3.2E-11 6.9E-16 102.6 9.3 100 166-265 1-146 (224)
17 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 8.7E-11 1.9E-15 99.4 11.8 121 153-275 30-223 (223)
18 PRK15068 tRNA mo(5)U34 methylt 99.2 5.1E-11 1.1E-15 106.9 10.6 108 154-264 114-275 (322)
19 PF12847 Methyltransf_18: Meth 99.2 1.6E-11 3.5E-16 92.7 5.8 91 165-255 2-105 (112)
20 PRK06202 hypothetical protein; 99.2 1.3E-10 2.9E-15 99.5 11.7 102 162-264 58-223 (232)
21 PLN02336 phosphoethanolamine N 99.2 1.1E-10 2.3E-15 110.4 11.7 110 152-264 256-415 (475)
22 PRK05785 hypothetical protein; 99.2 2.8E-10 6.2E-15 97.1 12.8 108 164-275 51-224 (226)
23 PRK11036 putative S-adenosyl-L 99.2 7.4E-11 1.6E-15 102.5 9.1 108 153-265 36-209 (255)
24 PF13847 Methyltransf_31: Meth 99.2 4.7E-11 1E-15 95.5 6.8 76 164-239 3-90 (152)
25 PRK06922 hypothetical protein; 99.2 8.7E-11 1.9E-15 112.1 9.2 112 123-236 377-501 (677)
26 TIGR00452 methyltransferase, p 99.2 1.8E-10 4E-15 102.5 10.7 110 152-264 111-274 (314)
27 PRK08287 cobalt-precorrin-6Y C 99.1 1.8E-10 3.9E-15 95.4 9.0 105 155-261 24-154 (187)
28 PRK07580 Mg-protoporphyrin IX 99.1 3.2E-10 7E-15 96.7 10.5 101 163-265 62-216 (230)
29 smart00138 MeTrc Methyltransfe 99.1 7.7E-10 1.7E-14 96.6 12.2 107 151-259 88-240 (264)
30 TIGR03587 Pse_Me-ase pseudamin 99.1 1.5E-10 3.3E-15 97.2 7.4 79 162-240 41-123 (204)
31 PLN02396 hexaprenyldihydroxybe 99.1 2.1E-10 4.5E-15 102.6 8.3 99 164-264 131-290 (322)
32 PRK08317 hypothetical protein; 99.1 6.6E-10 1.4E-14 94.8 11.1 109 153-263 10-176 (241)
33 KOG1540 Ubiquinone biosynthesi 99.1 1.1E-09 2.4E-14 92.5 10.9 78 163-240 99-195 (296)
34 PRK11207 tellurite resistance 99.1 3.5E-10 7.6E-15 94.6 7.4 86 151-240 19-113 (197)
35 PRK11873 arsM arsenite S-adeno 99.0 1.4E-09 3.1E-14 95.3 10.7 102 162-263 75-230 (272)
36 COG4106 Tam Trans-aconitate me 99.0 3.3E-10 7.1E-15 93.5 6.1 88 151-240 19-110 (257)
37 PLN02585 magnesium protoporphy 99.0 5.5E-10 1.2E-14 99.6 8.1 99 164-264 144-300 (315)
38 PRK01683 trans-aconitate 2-met 99.0 2E-09 4.3E-14 93.6 10.5 88 151-240 20-111 (258)
39 PF13489 Methyltransf_23: Meth 99.0 8.8E-10 1.9E-14 88.3 7.6 93 162-260 20-160 (161)
40 TIGR02081 metW methionine bios 99.0 2.1E-09 4.6E-14 89.6 9.7 99 164-264 13-168 (194)
41 TIGR00537 hemK_rel_arch HemK-r 99.0 4.3E-09 9.2E-14 86.6 11.4 110 164-275 19-177 (179)
42 TIGR02072 BioC biotin biosynth 99.0 2.4E-09 5.2E-14 91.4 9.9 97 164-261 34-174 (240)
43 PLN03075 nicotianamine synthas 99.0 2.8E-09 6.1E-14 93.6 10.1 106 163-275 122-274 (296)
44 PF13649 Methyltransf_25: Meth 99.0 2.4E-10 5.3E-15 85.0 2.9 85 168-252 1-98 (101)
45 PF08241 Methyltransf_11: Meth 99.0 5.2E-10 1.1E-14 81.3 4.5 84 169-255 1-91 (95)
46 PRK10258 biotin biosynthesis p 99.0 8.4E-09 1.8E-13 89.3 12.7 86 151-240 31-121 (251)
47 PF08242 Methyltransf_12: Meth 99.0 1.3E-10 2.9E-15 86.0 0.6 68 169-236 1-80 (99)
48 TIGR00138 gidB 16S rRNA methyl 98.9 4.3E-09 9.3E-14 86.8 8.5 101 165-266 43-172 (181)
49 TIGR00477 tehB tellurite resis 98.9 3.6E-09 7.8E-14 88.3 7.3 101 152-256 20-128 (195)
50 PRK15001 SAM-dependent 23S rib 98.9 1.3E-08 2.9E-13 92.7 11.0 121 152-275 218-373 (378)
51 TIGR03534 RF_mod_PrmC protein- 98.9 2.2E-08 4.8E-13 86.4 11.0 101 164-264 87-242 (251)
52 PLN02336 phosphoethanolamine N 98.9 8.3E-09 1.8E-13 97.6 8.8 106 151-260 26-179 (475)
53 PF07021 MetW: Methionine bios 98.8 1.1E-08 2.4E-13 83.8 8.0 101 163-265 12-169 (193)
54 PRK00107 gidB 16S rRNA methylt 98.8 5.1E-08 1.1E-12 80.7 11.7 101 163-264 44-170 (187)
55 PRK04266 fibrillarin; Provisio 98.8 5.7E-08 1.2E-12 82.8 12.3 109 162-275 70-225 (226)
56 TIGR03438 probable methyltrans 98.8 3.2E-08 6.9E-13 88.1 11.0 77 164-240 63-156 (301)
57 PRK09328 N5-glutamine S-adenos 98.8 9.2E-08 2E-12 83.8 12.5 68 162-229 106-182 (275)
58 PF08100 Dimerisation: Dimeris 98.8 5.1E-09 1.1E-13 67.4 3.2 49 2-51 1-51 (51)
59 COG4123 Predicted O-methyltran 98.8 4.1E-08 9E-13 83.9 9.6 114 162-275 42-212 (248)
60 TIGR00536 hemK_fam HemK family 98.8 1E-07 2.2E-12 84.2 12.2 64 166-229 116-189 (284)
61 PF02353 CMAS: Mycolic acid cy 98.8 5.7E-08 1.2E-12 85.2 10.1 111 151-265 51-219 (273)
62 PRK14966 unknown domain/N5-glu 98.8 1.3E-07 2.9E-12 86.7 12.8 111 164-274 251-417 (423)
63 PRK12335 tellurite resistance 98.8 2E-08 4.3E-13 88.9 7.1 84 153-240 111-202 (287)
64 PF08003 Methyltransf_9: Prote 98.7 6.7E-08 1.5E-12 84.4 9.5 111 151-264 104-268 (315)
65 COG2230 Cfa Cyclopropane fatty 98.7 5.6E-08 1.2E-12 84.6 8.6 112 151-265 61-225 (283)
66 COG2890 HemK Methylase of poly 98.7 2E-07 4.3E-12 82.1 12.1 108 167-274 113-275 (280)
67 PHA03411 putative methyltransf 98.7 7.4E-08 1.6E-12 83.6 9.0 94 165-258 65-209 (279)
68 KOG1270 Methyltransferases [Co 98.7 1.3E-08 2.8E-13 86.6 3.8 97 165-263 90-249 (282)
69 PRK09489 rsmC 16S ribosomal RN 98.7 2.1E-07 4.6E-12 84.1 11.9 81 154-236 188-275 (342)
70 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.4E-08 5.1E-13 84.3 5.0 98 164-263 59-215 (243)
71 PF05401 NodS: Nodulation prot 98.7 3.6E-08 7.8E-13 81.0 5.8 75 162-238 41-122 (201)
72 PRK05134 bifunctional 3-demeth 98.7 1.7E-07 3.6E-12 80.2 9.9 99 163-263 47-205 (233)
73 TIGR02469 CbiT precorrin-6Y C5 98.7 1.3E-07 2.7E-12 72.3 8.1 96 154-256 11-117 (124)
74 PRK01544 bifunctional N5-gluta 98.6 2.1E-07 4.6E-12 88.4 10.9 65 164-228 138-212 (506)
75 PRK13944 protein-L-isoaspartat 98.6 1.4E-07 3.1E-12 79.3 8.6 94 153-256 63-168 (205)
76 PRK14968 putative methyltransf 98.6 4.9E-07 1.1E-11 74.4 11.6 100 163-264 22-174 (188)
77 PF05175 MTS: Methyltransferas 98.6 5.4E-08 1.2E-12 79.4 5.6 73 164-236 31-112 (170)
78 TIGR03533 L3_gln_methyl protei 98.6 1.2E-07 2.7E-12 83.7 7.2 66 164-229 121-196 (284)
79 PF06080 DUF938: Protein of un 98.6 2.4E-07 5.1E-12 77.0 8.3 112 163-274 23-203 (204)
80 TIGR01983 UbiG ubiquinone bios 98.6 2.1E-07 4.5E-12 79.0 8.0 98 164-263 45-203 (224)
81 PRK00121 trmB tRNA (guanine-N( 98.6 2.1E-07 4.5E-12 78.1 7.6 69 164-232 40-121 (202)
82 PRK13942 protein-L-isoaspartat 98.6 3.4E-07 7.4E-12 77.4 8.8 95 152-256 66-171 (212)
83 KOG1271 Methyltransferases [Ge 98.5 3.9E-07 8.4E-12 73.6 8.3 100 166-265 69-207 (227)
84 TIGR00080 pimt protein-L-isoas 98.5 3.5E-07 7.6E-12 77.4 8.6 95 152-256 67-172 (215)
85 PRK11805 N5-glutamine S-adenos 98.5 1.6E-07 3.4E-12 83.8 6.6 64 166-229 135-208 (307)
86 PF12147 Methyltransf_20: Puta 98.5 7E-07 1.5E-11 77.4 10.2 113 163-275 134-311 (311)
87 PRK11705 cyclopropane fatty ac 98.5 3.7E-07 8.1E-12 83.9 9.0 107 152-261 157-267 (383)
88 TIGR03840 TMPT_Se_Te thiopurin 98.5 5.7E-07 1.2E-11 76.0 8.7 89 163-253 33-144 (213)
89 PTZ00146 fibrillarin; Provisio 98.5 2E-06 4.4E-11 75.4 12.2 110 162-274 130-285 (293)
90 PRK11088 rrmA 23S rRNA methylt 98.5 5.7E-07 1.2E-11 78.9 8.6 68 164-231 85-160 (272)
91 PF03848 TehB: Tellurite resis 98.5 3.4E-07 7.3E-12 75.8 6.7 85 152-240 20-112 (192)
92 TIGR03704 PrmC_rel_meth putati 98.5 1.4E-06 3.1E-11 75.5 10.9 66 164-229 86-160 (251)
93 PRK00517 prmA ribosomal protei 98.5 6E-07 1.3E-11 77.8 8.4 103 163-271 118-246 (250)
94 COG2242 CobL Precorrin-6B meth 98.5 6.5E-07 1.4E-11 73.0 7.7 104 155-261 27-159 (187)
95 PRK04457 spermidine synthase; 98.5 3E-07 6.6E-12 80.2 6.0 67 163-229 65-143 (262)
96 smart00650 rADc Ribosomal RNA 98.5 6.6E-07 1.4E-11 72.9 7.6 79 152-235 3-89 (169)
97 COG2813 RsmC 16S RNA G1207 met 98.4 2.6E-06 5.6E-11 74.6 11.3 121 152-275 148-299 (300)
98 PRK14896 ksgA 16S ribosomal RN 98.4 9.1E-07 2E-11 77.1 8.1 81 151-236 18-104 (258)
99 TIGR00091 tRNA (guanine-N(7)-) 98.4 5.5E-07 1.2E-11 75.0 6.4 68 164-231 16-96 (194)
100 PRK00274 ksgA 16S ribosomal RN 98.4 9.7E-07 2.1E-11 77.5 7.2 77 152-233 32-115 (272)
101 PRK00377 cbiT cobalt-precorrin 98.4 2.1E-06 4.6E-11 71.7 8.5 101 156-258 34-165 (198)
102 PRK13255 thiopurine S-methyltr 98.3 2.1E-06 4.6E-11 72.8 8.3 77 162-240 35-134 (218)
103 PF13659 Methyltransf_26: Meth 98.3 7.7E-07 1.7E-11 67.5 5.1 69 166-235 2-83 (117)
104 PRK00312 pcm protein-L-isoaspa 98.3 8.3E-06 1.8E-10 68.8 11.4 95 153-259 69-173 (212)
105 PF01135 PCMT: Protein-L-isoas 98.3 3E-06 6.6E-11 71.3 8.4 95 151-255 61-166 (209)
106 TIGR00755 ksgA dimethyladenosi 98.3 1.5E-06 3.4E-11 75.4 6.7 82 151-236 18-107 (253)
107 PRK14121 tRNA (guanine-N(7)-)- 98.3 2.4E-06 5.1E-11 78.0 7.3 75 154-230 114-200 (390)
108 PRK11188 rrmJ 23S rRNA methylt 98.2 1E-05 2.2E-10 68.3 10.3 70 163-236 50-131 (209)
109 PRK07402 precorrin-6B methylas 98.2 4.8E-06 1E-10 69.4 8.2 73 154-228 32-115 (196)
110 TIGR00406 prmA ribosomal prote 98.2 3E-06 6.5E-11 75.0 7.1 99 164-264 159-284 (288)
111 COG2264 PrmA Ribosomal protein 98.2 2.3E-06 4.9E-11 75.2 6.1 112 162-275 160-299 (300)
112 PF05148 Methyltransf_8: Hypot 98.2 3.3E-05 7.1E-10 64.2 12.3 138 126-275 31-197 (219)
113 cd02440 AdoMet_MTases S-adenos 98.2 3.8E-06 8.1E-11 60.8 5.7 87 167-255 1-98 (107)
114 PRK13943 protein-L-isoaspartat 98.2 6E-06 1.3E-10 74.0 7.6 93 153-255 71-174 (322)
115 PHA03412 putative methyltransf 98.2 4.4E-06 9.5E-11 71.1 6.4 65 165-229 50-121 (241)
116 PTZ00338 dimethyladenosine tra 98.2 5.5E-06 1.2E-10 73.4 7.3 82 151-237 25-115 (294)
117 PRK00050 16S rRNA m(4)C1402 me 98.1 9.8E-06 2.1E-10 71.6 8.2 88 151-240 8-110 (296)
118 PF05891 Methyltransf_PK: AdoM 98.1 5.1E-06 1.1E-10 69.5 5.5 103 163-266 54-204 (218)
119 PRK14967 putative methyltransf 98.1 9.1E-06 2E-10 69.2 6.8 67 162-229 34-108 (223)
120 PLN02672 methionine S-methyltr 98.1 5.4E-06 1.2E-10 84.3 6.2 64 165-228 119-209 (1082)
121 PF06325 PrmA: Ribosomal prote 98.1 1.2E-05 2.6E-10 71.1 7.6 107 163-275 160-294 (295)
122 KOG2361 Predicted methyltransf 98.1 4.9E-06 1.1E-10 70.2 4.5 96 166-261 73-235 (264)
123 PRK03612 spermidine synthase; 98.0 1.9E-05 4.1E-10 75.5 8.8 67 163-230 296-381 (521)
124 PF05724 TPMT: Thiopurine S-me 98.0 2.2E-05 4.8E-10 66.6 7.4 99 162-263 35-190 (218)
125 COG2263 Predicted RNA methylas 98.0 1.9E-05 4E-10 64.5 6.5 97 164-261 45-166 (198)
126 KOG2904 Predicted methyltransf 98.0 1.9E-05 4.1E-10 67.9 6.8 67 162-228 146-228 (328)
127 PLN02366 spermidine synthase 98.0 1.4E-05 3E-10 71.3 6.3 66 163-229 90-172 (308)
128 TIGR01177 conserved hypothetic 98.0 2.4E-05 5.3E-10 70.5 7.9 100 162-264 180-316 (329)
129 PRK00811 spermidine synthase; 98.0 1.4E-05 3E-10 70.6 6.0 68 163-230 75-158 (283)
130 KOG0820 Ribosomal RNA adenine 97.9 3.1E-05 6.7E-10 66.5 7.3 74 151-228 47-129 (315)
131 PRK01581 speE spermidine synth 97.9 1.7E-05 3.7E-10 71.7 5.9 67 163-229 149-233 (374)
132 KOG2899 Predicted methyltransf 97.9 2.9E-05 6.3E-10 65.6 6.2 55 151-205 45-100 (288)
133 PRK13256 thiopurine S-methyltr 97.9 7.2E-05 1.6E-09 63.6 8.7 76 163-240 42-142 (226)
134 PRK13168 rumA 23S rRNA m(5)U19 97.9 1.7E-05 3.7E-10 74.5 5.3 111 151-265 286-426 (443)
135 PLN02232 ubiquinone biosynthes 97.9 3.3E-05 7.2E-10 62.3 6.0 82 192-273 1-158 (160)
136 COG4976 Predicted methyltransf 97.9 8.5E-06 1.8E-10 68.3 2.6 125 136-264 95-266 (287)
137 PRK04148 hypothetical protein; 97.9 6.8E-05 1.5E-09 58.3 7.4 64 164-230 16-85 (134)
138 KOG1541 Predicted protein carb 97.8 2.2E-05 4.7E-10 65.5 4.6 76 152-232 38-122 (270)
139 PRK03522 rumB 23S rRNA methylu 97.8 3.9E-05 8.5E-10 68.8 6.6 64 164-229 173-247 (315)
140 COG2518 Pcm Protein-L-isoaspar 97.8 0.00011 2.4E-09 61.3 8.5 91 153-255 63-163 (209)
141 PRK11727 23S rRNA mA1618 methy 97.8 0.00028 6.1E-09 63.2 11.2 67 164-230 114-197 (321)
142 PF09339 HTH_IclR: IclR helix- 97.8 1.1E-05 2.4E-10 52.3 1.4 47 10-60 6-52 (52)
143 PRK14902 16S rRNA methyltransf 97.8 5.5E-05 1.2E-09 71.1 6.6 74 153-228 241-326 (444)
144 PRK10901 16S rRNA methyltransf 97.7 7.4E-05 1.6E-09 69.8 7.1 75 152-228 234-319 (427)
145 TIGR00417 speE spermidine synt 97.7 7.5E-05 1.6E-09 65.5 6.7 69 163-231 71-154 (270)
146 COG1352 CheR Methylase of chem 97.7 0.00039 8.4E-09 60.6 10.9 96 164-259 96-239 (268)
147 TIGR00438 rrmJ cell division p 97.7 0.00012 2.5E-09 60.6 7.5 66 162-231 30-107 (188)
148 PF01739 CheR: CheR methyltran 97.7 3.8E-05 8.3E-10 64.0 4.5 95 163-257 30-171 (196)
149 PF04816 DUF633: Family of unk 97.7 9.4E-05 2E-09 62.1 6.8 108 168-275 1-139 (205)
150 PF08123 DOT1: Histone methyla 97.7 4.4E-05 9.6E-10 64.1 4.8 78 153-232 33-132 (205)
151 PRK10909 rsmD 16S rRNA m(2)G96 97.7 6.5E-05 1.4E-09 62.8 5.5 64 164-228 53-127 (199)
152 PF02390 Methyltransf_4: Putat 97.7 5.9E-05 1.3E-09 62.9 5.3 53 166-218 19-78 (195)
153 PF10294 Methyltransf_16: Puta 97.6 8.7E-05 1.9E-09 60.7 5.1 73 162-234 43-131 (173)
154 PLN02781 Probable caffeoyl-CoA 97.6 9.1E-05 2E-09 63.6 5.1 68 162-229 66-151 (234)
155 PF05185 PRMT5: PRMT5 arginine 97.6 0.00028 6E-09 66.2 8.3 98 124-228 151-264 (448)
156 KOG3045 Predicted RNA methylas 97.5 0.0012 2.6E-08 56.5 10.9 137 125-275 138-303 (325)
157 PLN02823 spermine synthase 97.5 0.00017 3.6E-09 65.1 5.8 67 163-229 102-183 (336)
158 COG0421 SpeE Spermidine syntha 97.5 0.00018 3.9E-09 63.2 5.8 68 163-230 75-157 (282)
159 TIGR00478 tly hemolysin TlyA f 97.5 0.00047 1E-08 58.8 8.1 111 151-264 63-218 (228)
160 COG0030 KsgA Dimethyladenosine 97.5 0.00063 1.4E-08 58.9 8.7 80 151-235 19-107 (259)
161 KOG1499 Protein arginine N-met 97.5 0.0002 4.3E-09 63.8 5.5 67 164-231 60-136 (346)
162 TIGR02085 meth_trns_rumB 23S r 97.5 0.00016 3.5E-09 66.3 5.1 63 164-228 233-306 (374)
163 TIGR00563 rsmB ribosomal RNA s 97.4 0.0008 1.7E-08 62.9 9.4 75 152-228 228-315 (426)
164 TIGR00479 rumA 23S rRNA (uraci 97.4 0.00014 3E-09 68.1 4.2 71 154-228 284-368 (431)
165 KOG1500 Protein arginine N-met 97.4 0.00029 6.2E-09 62.4 5.7 63 165-228 178-249 (517)
166 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00035 7.6E-09 61.0 6.2 81 151-235 19-109 (262)
167 PRK10611 chemotaxis methyltran 97.4 0.00027 5.9E-09 62.3 5.3 96 164-259 115-260 (287)
168 PRK14904 16S rRNA methyltransf 97.4 0.00041 8.8E-09 65.2 6.8 67 162-228 248-324 (445)
169 COG0220 Predicted S-adenosylme 97.4 0.0004 8.8E-09 59.1 6.0 54 165-218 49-109 (227)
170 smart00550 Zalpha Z-DNA-bindin 97.3 0.00035 7.5E-09 47.9 4.4 60 7-73 6-66 (68)
171 PF01596 Methyltransf_3: O-met 97.3 0.00012 2.6E-09 61.5 2.5 68 163-230 44-129 (205)
172 TIGR00006 S-adenosyl-methyltra 97.3 0.0013 2.9E-08 58.3 9.1 88 151-240 9-112 (305)
173 smart00346 HTH_ICLR helix_turn 97.3 0.00028 6E-09 51.0 4.0 57 10-74 8-64 (91)
174 PF04672 Methyltransf_19: S-ad 97.3 0.0012 2.6E-08 57.3 8.3 77 164-240 68-168 (267)
175 PRK14903 16S rRNA methyltransf 97.3 0.00051 1.1E-08 64.3 6.4 73 154-228 229-313 (431)
176 KOG4300 Predicted methyltransf 97.3 0.001 2.2E-08 55.2 7.3 100 138-240 52-163 (252)
177 PF09243 Rsm22: Mitochondrial 97.3 0.00074 1.6E-08 59.3 6.9 97 164-260 33-165 (274)
178 PF11968 DUF3321: Putative met 97.3 0.0017 3.6E-08 54.4 8.5 91 165-266 52-184 (219)
179 PRK14901 16S rRNA methyltransf 97.2 0.0006 1.3E-08 63.9 6.3 75 152-228 242-331 (434)
180 PF09445 Methyltransf_15: RNA 97.2 0.00018 4E-09 57.9 2.2 62 166-229 1-76 (163)
181 COG1414 IclR Transcriptional r 97.2 0.00036 7.9E-09 60.3 4.0 58 10-75 7-64 (246)
182 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.0011 2.4E-08 57.9 7.1 67 162-228 69-146 (264)
183 PLN02476 O-methyltransferase 97.2 0.00062 1.4E-08 59.7 5.3 67 162-228 116-200 (278)
184 COG2519 GCD14 tRNA(1-methylade 97.2 0.0014 3E-08 56.2 7.2 84 143-228 71-169 (256)
185 COG4262 Predicted spermidine s 97.2 0.00088 1.9E-08 60.0 6.1 108 163-276 288-452 (508)
186 TIGR02431 pcaR_pcaU beta-ketoa 97.2 0.0004 8.7E-09 60.0 3.9 56 10-75 12-67 (248)
187 KOG3010 Methyltransferase [Gen 97.2 0.00035 7.6E-09 59.2 3.3 75 164-240 33-118 (261)
188 PRK11760 putative 23S rRNA C24 97.2 0.0026 5.6E-08 57.1 8.9 68 162-231 209-279 (357)
189 PRK00536 speE spermidine synth 97.2 0.001 2.2E-08 57.8 6.3 64 163-229 71-146 (262)
190 PF05219 DREV: DREV methyltran 97.1 0.0017 3.8E-08 55.8 7.4 73 164-239 94-168 (265)
191 PRK11569 transcriptional repre 97.1 0.0005 1.1E-08 60.4 4.2 58 10-75 31-88 (274)
192 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0006 1.3E-08 67.6 5.2 64 164-228 538-614 (702)
193 PRK10163 DNA-binding transcrip 97.1 0.00058 1.3E-08 59.9 4.3 58 9-74 27-84 (271)
194 TIGR01444 fkbM_fam methyltrans 97.1 0.00092 2E-08 52.4 4.9 52 167-218 1-59 (143)
195 COG3963 Phospholipid N-methylt 97.1 0.002 4.4E-08 51.7 6.6 89 150-240 36-135 (194)
196 PF13679 Methyltransf_32: Meth 97.1 0.00075 1.6E-08 53.2 4.2 70 162-231 23-108 (141)
197 KOG3420 Predicted RNA methylas 97.1 0.00098 2.1E-08 52.2 4.7 65 164-230 48-122 (185)
198 PRK15128 23S rRNA m(5)C1962 me 97.0 0.00077 1.7E-08 62.3 4.8 65 164-229 220-300 (396)
199 PF01564 Spermine_synth: Sperm 97.0 0.00084 1.8E-08 58.1 4.5 66 163-228 75-156 (246)
200 PRK15090 DNA-binding transcrip 97.0 0.00069 1.5E-08 58.9 4.0 57 10-75 17-73 (257)
201 TIGR02143 trmA_only tRNA (urac 97.0 0.00065 1.4E-08 61.9 4.0 51 166-218 199-256 (353)
202 COG0357 GidB Predicted S-adeno 97.0 0.00099 2.2E-08 56.1 4.8 100 165-264 68-196 (215)
203 COG4122 Predicted O-methyltran 97.0 0.0015 3.3E-08 55.2 5.9 67 162-228 57-138 (219)
204 KOG3191 Predicted N6-DNA-methy 97.0 0.011 2.5E-07 48.1 10.3 109 165-273 44-206 (209)
205 KOG1661 Protein-L-isoaspartate 96.9 0.0015 3.2E-08 54.3 5.0 95 153-255 71-187 (237)
206 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0008 1.7E-08 61.5 3.5 51 166-218 208-265 (362)
207 PRK09834 DNA-binding transcrip 96.8 0.0012 2.7E-08 57.5 4.1 60 9-76 13-72 (263)
208 PF01170 UPF0020: Putative RNA 96.8 0.0022 4.8E-08 52.7 5.2 75 153-229 19-113 (179)
209 PRK01544 bifunctional N5-gluta 96.8 0.0021 4.5E-08 61.4 5.5 66 164-229 347-424 (506)
210 TIGR00095 RNA methyltransferas 96.8 0.0015 3.2E-08 54.2 3.8 64 164-228 49-127 (189)
211 PF12840 HTH_20: Helix-turn-he 96.8 0.00056 1.2E-08 45.7 1.1 52 4-60 7-58 (61)
212 PF02527 GidB: rRNA small subu 96.8 0.0037 7.9E-08 51.6 6.1 65 167-231 51-124 (184)
213 PF01978 TrmB: Sugar-specific 96.7 0.00036 7.9E-09 47.7 0.0 48 8-60 9-56 (68)
214 PF01022 HTH_5: Bacterial regu 96.7 0.00087 1.9E-08 42.3 1.6 44 9-58 4-47 (47)
215 smart00419 HTH_CRP helix_turn_ 96.6 0.0028 6E-08 39.7 3.7 42 21-72 7-48 (48)
216 PLN02589 caffeoyl-CoA O-methyl 96.6 0.0029 6.2E-08 54.7 4.9 67 162-228 77-162 (247)
217 PF02475 Met_10: Met-10+ like- 96.6 0.0031 6.8E-08 52.7 4.9 69 163-231 100-178 (200)
218 PF08704 GCD14: tRNA methyltra 96.6 0.0083 1.8E-07 51.8 7.5 104 153-263 31-171 (247)
219 PF03291 Pox_MCEL: mRNA cappin 96.6 0.0087 1.9E-07 54.0 7.9 99 136-239 38-163 (331)
220 KOG1331 Predicted methyltransf 96.6 0.0016 3.5E-08 56.5 3.1 98 163-264 44-146 (293)
221 KOG2940 Predicted methyltransf 96.6 0.0037 8.1E-08 52.7 4.8 97 164-261 72-225 (325)
222 COG3897 Predicted methyltransf 96.6 0.011 2.3E-07 48.8 7.3 94 162-259 77-176 (218)
223 TIGR03439 methyl_EasF probable 96.5 0.022 4.8E-07 51.1 10.0 86 151-240 67-175 (319)
224 PF13463 HTH_27: Winged helix 96.5 0.0019 4.1E-08 43.8 2.3 63 9-75 5-68 (68)
225 PF13412 HTH_24: Winged helix- 96.5 0.0022 4.8E-08 40.5 2.3 45 8-57 4-48 (48)
226 PRK10141 DNA-binding transcrip 96.4 0.0033 7.1E-08 47.9 3.2 63 4-73 13-75 (117)
227 PRK10857 DNA-binding transcrip 96.3 0.0071 1.5E-07 49.0 5.0 47 21-74 24-70 (164)
228 PF02082 Rrf2: Transcriptional 96.3 0.0071 1.5E-07 43.0 4.5 48 21-75 24-71 (83)
229 KOG3115 Methyltransferase-like 96.3 0.0024 5.2E-08 52.8 2.2 55 164-218 60-128 (249)
230 PF07091 FmrO: Ribosomal RNA m 96.3 0.0031 6.8E-08 54.0 3.0 78 163-240 104-189 (251)
231 cd00092 HTH_CRP helix_turn_hel 96.3 0.0065 1.4E-07 40.9 4.1 44 21-73 24-67 (67)
232 PF09012 FeoC: FeoC like trans 96.2 0.0032 6.9E-08 43.2 2.2 44 12-60 5-48 (69)
233 PRK04338 N(2),N(2)-dimethylgua 96.2 0.0074 1.6E-07 55.5 5.2 65 165-229 58-132 (382)
234 COG4076 Predicted RNA methylas 96.2 0.0096 2.1E-07 48.8 4.9 63 166-230 34-104 (252)
235 COG2384 Predicted SAM-dependen 96.1 0.013 2.8E-07 49.2 5.6 112 164-275 16-158 (226)
236 PF14947 HTH_45: Winged helix- 96.1 0.0057 1.2E-07 43.0 2.9 54 12-77 11-64 (77)
237 PF08220 HTH_DeoR: DeoR-like h 96.1 0.0093 2E-07 39.3 3.8 45 11-60 4-48 (57)
238 PF13601 HTH_34: Winged helix 96.0 0.0023 4.9E-08 45.4 0.7 64 8-76 1-66 (80)
239 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.02 4.4E-07 56.9 7.7 77 151-229 178-310 (702)
240 COG2521 Predicted archaeal met 96.0 0.013 2.8E-07 49.7 5.1 97 162-264 132-278 (287)
241 PF03141 Methyltransf_29: Puta 96.0 0.0055 1.2E-07 57.3 3.0 75 163-240 116-199 (506)
242 COG0293 FtsJ 23S rRNA methylas 95.9 0.042 9.2E-07 45.9 7.9 67 147-218 29-96 (205)
243 PF04703 FaeA: FaeA-like prote 95.9 0.0086 1.9E-07 40.1 3.0 46 11-60 4-49 (62)
244 PRK03902 manganese transport t 95.9 0.011 2.4E-07 46.5 4.2 56 14-79 15-70 (142)
245 smart00347 HTH_MARR helix_turn 95.9 0.011 2.4E-07 42.9 4.0 64 8-76 11-75 (101)
246 PF01795 Methyltransf_5: MraW 95.8 0.021 4.5E-07 50.9 5.9 88 151-240 9-113 (310)
247 PF04967 HTH_10: HTH DNA bindi 95.8 0.013 2.8E-07 38.0 3.4 41 2-50 7-47 (53)
248 TIGR00738 rrf2_super rrf2 fami 95.8 0.016 3.4E-07 44.9 4.6 47 21-74 24-70 (132)
249 KOG1975 mRNA cap methyltransfe 95.7 0.023 5E-07 50.4 5.6 94 136-240 99-215 (389)
250 PHA00738 putative HTH transcri 95.6 0.015 3.2E-07 43.2 3.5 48 8-60 13-60 (108)
251 PF12802 MarR_2: MarR family; 95.6 0.0069 1.5E-07 40.2 1.7 49 8-60 6-55 (62)
252 COG1321 TroR Mn-dependent tran 95.6 0.018 4E-07 46.0 4.3 58 13-80 16-73 (154)
253 TIGR02337 HpaR homoprotocatech 95.5 0.021 4.6E-07 43.3 4.3 67 8-79 29-96 (118)
254 smart00420 HTH_DEOR helix_turn 95.3 0.024 5.2E-07 35.9 3.4 44 12-60 5-48 (53)
255 KOG4589 Cell division protein 95.3 0.065 1.4E-06 44.0 6.5 68 162-234 67-147 (232)
256 COG4742 Predicted transcriptio 95.3 0.02 4.3E-07 49.5 3.8 62 7-80 13-74 (260)
257 TIGR02010 IscR iron-sulfur clu 95.3 0.035 7.6E-07 43.3 4.8 47 21-74 24-70 (135)
258 PF01728 FtsJ: FtsJ-like methy 95.2 0.029 6.2E-07 45.9 4.5 64 151-218 9-74 (181)
259 PF07757 AdoMet_MTase: Predict 95.2 0.026 5.6E-07 42.0 3.7 32 163-196 57-88 (112)
260 smart00418 HTH_ARSR helix_turn 95.2 0.033 7.1E-07 36.6 4.0 43 12-60 2-44 (66)
261 TIGR02702 SufR_cyano iron-sulf 95.2 0.022 4.8E-07 47.7 3.7 63 10-78 4-70 (203)
262 TIGR01884 cas_HTH CRISPR locus 95.2 0.028 6.1E-07 47.1 4.3 59 9-75 145-203 (203)
263 COG3355 Predicted transcriptio 95.1 0.031 6.8E-07 42.8 4.1 44 12-60 32-76 (126)
264 PF01047 MarR: MarR family; I 95.1 0.0095 2.1E-07 39.2 1.1 48 8-60 4-51 (59)
265 PRK11050 manganese transport r 95.1 0.028 6.1E-07 44.9 3.9 57 12-78 42-98 (152)
266 PRK06266 transcription initiat 95.1 0.031 6.7E-07 45.8 4.2 46 10-60 25-70 (178)
267 COG4301 Uncharacterized conser 95.0 0.08 1.7E-06 45.3 6.5 77 164-240 78-172 (321)
268 PF02384 N6_Mtase: N-6 DNA Met 95.0 0.049 1.1E-06 48.5 5.7 74 162-235 44-140 (311)
269 PF08461 HTH_12: Ribonuclease 94.9 0.029 6.3E-07 38.1 3.1 60 12-76 3-63 (66)
270 TIGR00122 birA_repr_reg BirA b 94.9 0.032 7E-07 38.1 3.4 57 9-76 2-58 (69)
271 PRK11512 DNA-binding transcrip 94.9 0.039 8.6E-07 43.4 4.2 62 9-77 42-106 (144)
272 PF01325 Fe_dep_repress: Iron 94.9 0.028 6E-07 37.4 2.8 37 20-60 20-56 (60)
273 PF01726 LexA_DNA_bind: LexA D 94.8 0.027 5.9E-07 38.1 2.7 47 11-60 10-60 (65)
274 COG1959 Predicted transcriptio 94.8 0.035 7.6E-07 44.2 3.7 48 21-75 24-71 (150)
275 PRK15431 ferrous iron transpor 94.7 0.045 9.7E-07 38.2 3.5 44 12-60 7-50 (78)
276 TIGR02944 suf_reg_Xantho FeS a 94.6 0.036 7.9E-07 42.8 3.4 46 21-73 24-69 (130)
277 PRK11014 transcriptional repre 94.5 0.068 1.5E-06 42.0 4.8 46 21-73 24-69 (141)
278 COG2345 Predicted transcriptio 94.5 0.041 9E-07 46.3 3.5 61 11-77 15-79 (218)
279 PRK11920 rirA iron-responsive 94.5 0.064 1.4E-06 42.9 4.5 47 21-74 23-69 (153)
280 TIGR02987 met_A_Alw26 type II 94.4 0.051 1.1E-06 52.2 4.6 65 164-228 31-118 (524)
281 smart00344 HTH_ASNC helix_turn 94.4 0.04 8.6E-07 41.0 3.0 48 8-60 4-51 (108)
282 TIGR00373 conserved hypothetic 94.4 0.055 1.2E-06 43.5 4.0 46 10-60 17-62 (158)
283 COG0116 Predicted N6-adenine-s 94.3 0.13 2.7E-06 47.1 6.5 77 151-229 180-306 (381)
284 PF03602 Cons_hypoth95: Conser 94.2 0.054 1.2E-06 44.6 3.6 64 164-228 42-120 (183)
285 PRK03573 transcriptional regul 94.1 0.079 1.7E-06 41.6 4.3 62 11-78 35-99 (144)
286 TIGR01889 Staph_reg_Sar staphy 94.1 0.069 1.5E-06 40.0 3.7 62 9-76 27-94 (109)
287 COG0275 Predicted S-adenosylme 94.0 0.15 3.2E-06 45.0 6.2 66 151-218 12-84 (314)
288 cd00090 HTH_ARSR Arsenical Res 94.0 0.068 1.5E-06 36.2 3.4 47 8-60 8-54 (78)
289 smart00345 HTH_GNTR helix_turn 94.0 0.11 2.5E-06 33.7 4.2 36 21-60 18-54 (60)
290 TIGR01610 phage_O_Nterm phage 93.9 0.091 2E-06 38.4 4.0 45 21-73 46-90 (95)
291 PF08279 HTH_11: HTH domain; 93.9 0.08 1.7E-06 34.2 3.3 41 11-55 4-44 (55)
292 cd07377 WHTH_GntR Winged helix 93.8 0.13 2.8E-06 34.1 4.4 34 23-60 26-59 (66)
293 cd07153 Fur_like Ferric uptake 93.8 0.1 2.2E-06 39.3 4.2 63 9-72 3-66 (116)
294 PRK10742 putative methyltransf 93.8 0.15 3.2E-06 44.0 5.5 73 152-228 76-170 (250)
295 smart00529 HTH_DTXR Helix-turn 93.7 0.091 2E-06 38.1 3.7 46 25-79 2-47 (96)
296 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.6 0.063 1.4E-06 46.6 3.2 98 164-263 56-239 (256)
297 COG2265 TrmA SAM-dependent met 93.6 0.095 2.1E-06 49.0 4.5 106 151-265 282-422 (432)
298 KOG2187 tRNA uracil-5-methyltr 93.5 0.082 1.8E-06 49.7 3.8 59 156-218 377-442 (534)
299 PF06163 DUF977: Bacterial pro 93.4 0.11 2.5E-06 39.6 3.8 51 5-60 10-60 (127)
300 TIGR00308 TRM1 tRNA(guanine-26 93.3 0.12 2.5E-06 47.5 4.5 64 165-228 45-120 (374)
301 KOG2730 Methylase [General fun 93.2 0.066 1.4E-06 45.1 2.5 53 164-218 94-154 (263)
302 PF00325 Crp: Bacterial regula 93.2 0.057 1.2E-06 31.0 1.5 31 22-56 2-32 (32)
303 PLN02668 indole-3-acetate carb 93.1 0.36 7.8E-06 44.4 7.3 74 164-237 63-177 (386)
304 PF07381 DUF1495: Winged helix 92.7 0.14 3.1E-06 36.9 3.4 67 6-78 8-86 (90)
305 PF03059 NAS: Nicotianamine sy 92.7 0.24 5.3E-06 43.4 5.4 111 164-275 120-271 (276)
306 KOG2915 tRNA(1-methyladenosine 92.6 0.44 9.6E-06 41.5 6.7 88 139-228 78-183 (314)
307 COG1568 Predicted methyltransf 92.3 0.2 4.4E-06 43.6 4.3 176 24-227 36-226 (354)
308 PF05958 tRNA_U5-meth_tr: tRNA 92.2 0.11 2.4E-06 47.4 2.8 61 151-216 186-253 (352)
309 PRK06474 hypothetical protein; 92.2 0.15 3.2E-06 41.8 3.3 71 3-77 7-81 (178)
310 KOG1709 Guanidinoacetate methy 92.1 0.51 1.1E-05 39.7 6.3 66 163-228 100-175 (271)
311 PF01861 DUF43: Protein of unk 92.1 0.43 9.4E-06 40.8 6.1 101 163-264 43-179 (243)
312 PF01638 HxlR: HxlR-like helix 92.1 0.066 1.4E-06 38.6 1.0 61 12-79 10-73 (90)
313 COG4189 Predicted transcriptio 92.1 0.21 4.5E-06 42.3 4.0 54 2-60 18-71 (308)
314 COG1378 Predicted transcriptio 92.0 0.27 5.8E-06 42.5 4.8 62 9-78 18-79 (247)
315 PRK14165 winged helix-turn-hel 92.0 0.2 4.3E-06 42.4 3.8 61 9-76 9-69 (217)
316 PF13545 HTH_Crp_2: Crp-like h 92.0 0.18 3.8E-06 34.8 3.0 43 21-73 27-69 (76)
317 PRK11169 leucine-responsive tr 91.9 0.17 3.6E-06 40.9 3.2 48 8-60 15-62 (164)
318 PRK11179 DNA-binding transcrip 91.9 0.17 3.8E-06 40.3 3.3 48 8-60 10-57 (153)
319 KOG2793 Putative N2,N2-dimethy 91.6 0.44 9.6E-06 41.1 5.7 71 164-235 86-175 (248)
320 PF05971 Methyltransf_10: Prot 91.5 2.9 6.3E-05 37.1 10.8 72 163-235 101-190 (299)
321 COG2512 Predicted membrane-ass 91.4 0.16 3.4E-06 44.2 2.7 48 9-60 197-244 (258)
322 PF10007 DUF2250: Uncharacteri 91.3 0.22 4.7E-06 36.2 3.0 48 8-60 8-55 (92)
323 PHA02943 hypothetical protein; 91.3 0.26 5.7E-06 38.9 3.5 105 11-144 15-119 (165)
324 TIGR00498 lexA SOS regulatory 91.0 0.31 6.8E-06 40.5 4.1 50 7-60 6-60 (199)
325 PF02319 E2F_TDP: E2F/DP famil 90.9 0.21 4.6E-06 34.3 2.5 36 21-60 23-63 (71)
326 COG2520 Predicted methyltransf 90.9 0.34 7.4E-06 43.8 4.4 94 164-258 188-315 (341)
327 PRK11933 yebU rRNA (cytosine-C 90.7 0.66 1.4E-05 44.0 6.4 66 162-227 111-188 (470)
328 PRK04172 pheS phenylalanyl-tRN 90.5 0.23 5E-06 47.3 3.2 69 7-83 6-75 (489)
329 COG1522 Lrp Transcriptional re 90.4 0.29 6.3E-06 38.6 3.3 49 7-60 8-56 (154)
330 PRK10870 transcriptional repre 90.3 0.37 7.9E-06 39.4 3.8 66 10-79 58-125 (176)
331 PF07789 DUF1627: Protein of u 90.2 0.48 1E-05 37.1 4.1 36 21-60 5-40 (155)
332 COG4190 Predicted transcriptio 90.1 0.37 7.9E-06 37.1 3.3 47 9-60 66-112 (144)
333 KOG4058 Uncharacterized conser 90.1 0.18 3.9E-06 39.8 1.7 69 152-223 62-139 (199)
334 PF02002 TFIIE_alpha: TFIIE al 90.1 0.15 3.3E-06 37.8 1.3 45 11-60 17-61 (105)
335 TIGR00027 mthyl_TIGR00027 meth 89.8 1.4 3E-05 38.4 7.3 77 163-240 80-176 (260)
336 PF14394 DUF4423: Domain of un 89.8 0.55 1.2E-05 38.2 4.4 48 21-77 38-87 (171)
337 PF03444 HrcA_DNA-bdg: Winged 89.8 0.51 1.1E-05 33.0 3.6 48 20-75 21-69 (78)
338 COG5459 Predicted rRNA methyla 89.7 0.42 9.1E-06 43.1 3.9 77 164-240 113-200 (484)
339 COG0742 N6-adenine-specific me 89.7 0.79 1.7E-05 37.8 5.2 64 164-228 43-120 (187)
340 PRK13777 transcriptional regul 89.6 0.46 1E-05 39.2 3.9 63 10-79 48-113 (185)
341 COG1189 Predicted rRNA methyla 89.5 1.2 2.7E-05 38.0 6.4 111 152-264 68-225 (245)
342 PRK00215 LexA repressor; Valid 89.4 0.51 1.1E-05 39.4 4.1 37 20-60 21-58 (205)
343 COG1846 MarR Transcriptional r 89.1 0.5 1.1E-05 35.2 3.6 64 9-77 24-88 (126)
344 KOG3987 Uncharacterized conser 89.0 0.056 1.2E-06 45.1 -2.0 26 163-188 111-136 (288)
345 COG3432 Predicted transcriptio 88.8 0.26 5.5E-06 35.9 1.6 62 12-79 20-82 (95)
346 PF11994 DUF3489: Protein of u 88.8 1.2 2.5E-05 30.7 4.7 55 12-71 15-71 (72)
347 PRK04214 rbn ribonuclease BN/u 88.6 0.59 1.3E-05 43.6 4.3 46 19-73 307-352 (412)
348 COG1889 NOP1 Fibrillarin-like 88.5 7.4 0.00016 32.6 10.1 109 162-275 74-229 (231)
349 PF13578 Methyltransf_24: Meth 88.3 0.18 3.8E-06 37.2 0.5 60 169-228 1-75 (106)
350 PHA02701 ORF020 dsRNA-binding 88.1 0.76 1.6E-05 37.5 4.1 60 8-74 5-64 (183)
351 PRK13509 transcriptional repre 88.1 0.56 1.2E-05 40.6 3.6 46 10-60 8-53 (251)
352 PF03492 Methyltransf_7: SAM d 87.8 0.76 1.6E-05 41.6 4.4 76 162-237 14-122 (334)
353 PF12793 SgrR_N: Sugar transpo 87.7 0.8 1.7E-05 34.7 3.8 36 21-60 18-53 (115)
354 PF00392 GntR: Bacterial regul 87.4 0.54 1.2E-05 31.4 2.5 37 20-60 21-58 (64)
355 PF04989 CmcI: Cephalosporin h 87.3 0.98 2.1E-05 37.8 4.4 55 164-218 32-96 (206)
356 PF04182 B-block_TFIIIC: B-blo 87.3 0.59 1.3E-05 32.4 2.7 50 7-60 2-52 (75)
357 COG1565 Uncharacterized conser 87.3 1.7 3.6E-05 39.5 6.1 63 132-200 51-122 (370)
358 COG1497 Predicted transcriptio 87.2 0.72 1.6E-05 39.3 3.5 62 10-80 13-75 (260)
359 KOG3924 Putative protein methy 87.1 0.67 1.5E-05 42.4 3.5 71 162-232 190-282 (419)
360 PF13404 HTH_AsnC-type: AsnC-t 87.0 0.5 1.1E-05 28.9 1.9 28 8-36 4-31 (42)
361 COG1092 Predicted SAM-dependen 87.0 0.8 1.7E-05 42.3 4.0 63 164-228 217-296 (393)
362 PLN02853 Probable phenylalanyl 86.9 0.43 9.3E-06 45.1 2.3 71 6-84 2-74 (492)
363 PRK10906 DNA-binding transcrip 86.6 0.64 1.4E-05 40.3 3.1 46 10-60 8-53 (252)
364 COG0500 SmtA SAM-dependent met 86.6 2.4 5.2E-05 31.7 6.1 84 168-255 52-149 (257)
365 PF05732 RepL: Firmicute plasm 86.5 0.86 1.9E-05 36.9 3.6 43 23-74 76-118 (165)
366 COG4565 CitB Response regulato 86.3 0.78 1.7E-05 38.5 3.2 44 12-59 163-206 (224)
367 PF01269 Fibrillarin: Fibrilla 85.9 5.3 0.00012 33.9 8.1 109 162-274 71-226 (229)
368 PRK11753 DNA-binding transcrip 85.6 0.98 2.1E-05 37.4 3.7 41 22-72 168-208 (211)
369 TIGR03697 NtcA_cyano global ni 85.6 0.99 2.2E-05 36.7 3.6 41 22-72 143-183 (193)
370 PRK09802 DNA-binding transcrip 85.6 0.88 1.9E-05 39.8 3.5 47 9-60 19-65 (269)
371 PRK10434 srlR DNA-bindng trans 85.4 0.9 2E-05 39.4 3.4 46 10-60 8-53 (256)
372 PF05584 Sulfolobus_pRN: Sulfo 85.3 1.2 2.6E-05 30.6 3.2 44 10-59 8-51 (72)
373 COG1510 Predicted transcriptio 85.2 0.83 1.8E-05 36.9 2.8 37 20-60 39-75 (177)
374 PF08784 RPA_C: Replication pr 85.1 0.57 1.2E-05 34.5 1.8 48 8-59 48-98 (102)
375 PTZ00326 phenylalanyl-tRNA syn 85.0 0.71 1.5E-05 43.8 2.7 72 6-84 5-77 (494)
376 PRK05638 threonine synthase; V 84.9 1.2 2.5E-05 42.0 4.2 62 8-76 372-435 (442)
377 PF06969 HemN_C: HemN C-termin 84.4 0.86 1.9E-05 30.5 2.3 53 14-76 13-65 (66)
378 PRK11161 fumarate/nitrate redu 84.3 1.2 2.5E-05 37.7 3.6 42 22-73 184-225 (235)
379 PRK13918 CRP/FNR family transc 84.3 1.3 2.7E-05 36.5 3.7 43 21-73 148-190 (202)
380 PRK10411 DNA-binding transcrip 84.3 1.3 2.7E-05 38.2 3.8 46 10-60 7-52 (240)
381 PF07942 N2227: N2227-like pro 83.8 12 0.00026 32.8 9.6 99 163-263 55-242 (270)
382 PRK11886 bifunctional biotin-- 83.8 1.4 3.1E-05 39.4 4.1 57 9-74 6-62 (319)
383 COG3315 O-Methyltransferase in 83.3 2.2 4.8E-05 37.9 5.0 75 164-240 92-188 (297)
384 PF13730 HTH_36: Helix-turn-he 83.1 1 2.2E-05 28.9 2.1 29 24-56 27-55 (55)
385 PF04072 LCM: Leucine carboxyl 83.0 1.7 3.8E-05 35.5 4.0 78 163-240 77-175 (183)
386 KOG0822 Protein kinase inhibit 82.4 3.8 8.3E-05 39.1 6.3 97 124-227 333-444 (649)
387 COG1349 GlpR Transcriptional r 82.4 1.4 3E-05 38.3 3.3 46 10-60 8-53 (253)
388 PF05206 TRM13: Methyltransfer 82.3 2.3 4.9E-05 37.1 4.6 36 162-197 16-56 (259)
389 TIGR02147 Fsuc_second hypothet 82.2 2.1 4.5E-05 37.6 4.3 46 21-75 136-183 (271)
390 PRK09775 putative DNA-binding 81.5 1.9 4E-05 40.6 4.0 53 12-74 5-57 (442)
391 PF02295 z-alpha: Adenosine de 81.3 0.55 1.2E-05 31.8 0.3 60 8-73 5-64 (66)
392 PRK10046 dpiA two-component re 81.2 1.6 3.5E-05 36.6 3.3 45 12-60 167-211 (225)
393 PRK09954 putative kinase; Prov 81.2 1.4 3.1E-05 40.1 3.1 54 9-75 5-58 (362)
394 PRK11642 exoribonuclease R; Pr 80.9 2.3 5E-05 43.2 4.7 58 11-73 23-80 (813)
395 PF13518 HTH_28: Helix-turn-he 80.9 1.7 3.7E-05 27.2 2.6 29 23-55 13-41 (52)
396 PF05331 DUF742: Protein of un 80.9 2.2 4.7E-05 32.3 3.5 42 12-60 48-89 (114)
397 TIGR01321 TrpR trp operon repr 80.7 1.6 3.5E-05 31.7 2.6 41 6-52 41-81 (94)
398 PRK12423 LexA repressor; Provi 80.7 2.5 5.3E-05 35.3 4.1 47 10-60 9-60 (202)
399 PRK11639 zinc uptake transcrip 80.4 3.1 6.7E-05 33.7 4.5 53 8-60 27-80 (169)
400 PF13384 HTH_23: Homeodomain-l 80.2 0.98 2.1E-05 28.3 1.2 40 9-55 7-46 (50)
401 PF10672 Methyltrans_SAM: S-ad 80.2 2.4 5.2E-05 37.5 4.1 64 164-228 123-201 (286)
402 COG1733 Predicted transcriptio 80.1 2.9 6.3E-05 31.9 4.0 61 13-79 29-91 (120)
403 PF08221 HTH_9: RNA polymerase 79.9 1.4 3E-05 29.4 1.9 44 11-59 17-60 (62)
404 PRK10402 DNA-binding transcrip 79.8 2 4.4E-05 36.2 3.4 41 22-72 169-209 (226)
405 PF14338 Mrr_N: Mrr N-terminal 79.6 2.3 4.9E-05 30.7 3.1 30 44-78 58-87 (92)
406 PF04492 Phage_rep_O: Bacterio 79.4 2.6 5.6E-05 31.1 3.4 36 21-60 53-88 (100)
407 TIGR02787 codY_Gpos GTP-sensin 79.4 2.4 5.2E-05 36.3 3.6 46 11-60 187-232 (251)
408 PRK04424 fatty acid biosynthes 79.4 1 2.2E-05 37.1 1.4 46 10-60 10-55 (185)
409 PRK09391 fixK transcriptional 79.4 2.5 5.4E-05 35.9 3.8 43 22-73 179-221 (230)
410 PF02636 Methyltransf_28: Puta 79.3 3.3 7.1E-05 35.7 4.6 35 165-199 19-62 (252)
411 PF12324 HTH_15: Helix-turn-he 79.2 1.6 3.4E-05 30.5 2.0 35 12-51 29-63 (77)
412 TIGR03879 near_KaiC_dom probab 78.7 1.1 2.4E-05 31.0 1.1 34 21-58 31-64 (73)
413 PF04445 SAM_MT: Putative SAM- 78.4 2.6 5.6E-05 36.1 3.6 77 152-232 63-161 (234)
414 PF01475 FUR: Ferric uptake re 77.8 1.4 2.9E-05 33.4 1.6 67 6-73 7-74 (120)
415 KOG3201 Uncharacterized conser 77.6 0.42 9E-06 38.5 -1.4 96 164-260 29-163 (201)
416 KOG1663 O-methyltransferase [S 77.1 7.8 0.00017 33.0 6.0 57 162-218 71-136 (237)
417 PF02796 HTH_7: Helix-turn-hel 77.1 2 4.2E-05 26.5 1.9 30 12-48 14-43 (45)
418 PF00165 HTH_AraC: Bacterial r 77.0 2.4 5.2E-05 25.5 2.2 28 21-52 7-34 (42)
419 COG1725 Predicted transcriptio 76.9 3.4 7.4E-05 31.8 3.5 34 23-60 36-69 (125)
420 COG3682 Predicted transcriptio 75.9 3.5 7.6E-05 31.5 3.3 63 7-74 6-68 (123)
421 smart00531 TFIIE Transcription 75.8 3.9 8.5E-05 32.3 3.8 40 11-55 5-44 (147)
422 COG1802 GntR Transcriptional r 75.5 5.4 0.00012 33.8 4.8 48 19-75 36-83 (230)
423 PF03514 GRAS: GRAS domain fam 75.5 4.8 0.0001 37.0 4.8 46 151-198 99-151 (374)
424 PF07848 PaaX: PaaX-like prote 75.3 2.7 5.9E-05 28.8 2.3 53 16-74 14-69 (70)
425 KOG1562 Spermidine synthase [A 74.1 2.7 5.8E-05 37.2 2.5 66 162-228 119-201 (337)
426 TIGR02698 CopY_TcrY copper tra 74.0 4.6 9.9E-05 31.2 3.6 48 8-60 5-56 (130)
427 TIGR03338 phnR_burk phosphonat 73.5 5.3 0.00011 33.2 4.2 37 20-60 32-68 (212)
428 PRK10736 hypothetical protein; 73.2 4.8 0.0001 37.0 4.1 51 11-72 312-362 (374)
429 PRK11534 DNA-binding transcrip 73.0 7.3 0.00016 32.7 5.0 46 20-74 28-73 (224)
430 cd00315 Cyt_C5_DNA_methylase C 73.0 10 0.00022 33.3 6.0 67 167-236 2-76 (275)
431 COG0735 Fur Fe2+/Zn2+ uptake r 72.9 4.7 0.0001 31.8 3.5 66 8-74 22-88 (145)
432 PF03428 RP-C: Replication pro 72.8 3.6 7.7E-05 33.7 2.9 34 23-60 71-105 (177)
433 PF09904 HTH_43: Winged helix- 72.7 3.7 8.1E-05 29.5 2.6 49 21-73 20-70 (90)
434 PRK09462 fur ferric uptake reg 72.2 5.3 0.00011 31.5 3.7 64 8-72 18-83 (148)
435 PHA03103 double-strand RNA-bin 72.0 5.4 0.00012 32.8 3.7 55 11-73 17-71 (183)
436 KOG2651 rRNA adenine N-6-methy 71.8 6.5 0.00014 36.1 4.5 36 162-198 151-186 (476)
437 PRK01381 Trp operon repressor; 71.7 4.1 8.8E-05 29.9 2.6 40 6-51 41-80 (99)
438 COG1654 BirA Biotin operon rep 71.6 7.1 0.00015 27.4 3.8 56 12-77 11-66 (79)
439 PF09929 DUF2161: Uncharacteri 71.5 6.6 0.00014 29.7 3.8 52 12-76 64-115 (118)
440 PRK06719 precorrin-2 dehydroge 71.3 13 0.00028 29.6 5.8 63 164-229 12-77 (157)
441 TIGR01470 cysG_Nterm siroheme 71.3 15 0.00034 30.6 6.5 63 165-229 9-76 (205)
442 COG1675 TFA1 Transcription ini 71.2 4.5 9.9E-05 33.0 3.1 45 11-60 22-66 (176)
443 TIGR00635 ruvB Holliday juncti 70.9 3 6.6E-05 36.8 2.3 37 20-60 253-290 (305)
444 COG5340 Predicted transcriptio 70.7 6.5 0.00014 33.3 3.9 45 21-74 29-73 (269)
445 PF01189 Nol1_Nop2_Fmu: NOL1/N 70.2 8.8 0.00019 33.8 5.0 67 162-228 83-162 (283)
446 PF08280 HTH_Mga: M protein tr 69.9 2.7 5.8E-05 27.6 1.3 39 8-51 6-44 (59)
447 COG4798 Predicted methyltransf 69.8 15 0.00033 30.6 5.8 103 162-264 46-206 (238)
448 PF10668 Phage_terminase: Phag 69.7 4.1 8.9E-05 27.0 2.1 30 13-46 13-42 (60)
449 PRK00135 scpB segregation and 69.2 8.1 0.00017 32.0 4.2 43 10-60 93-135 (188)
450 PRK11414 colanic acid/biofilm 68.2 9.2 0.0002 32.1 4.6 37 20-60 32-68 (221)
451 KOG1501 Arginine N-methyltrans 68.0 5.8 0.00013 37.1 3.4 52 163-215 65-124 (636)
452 TIGR03433 padR_acidobact trans 67.9 13 0.00027 27.2 4.7 62 10-77 7-79 (100)
453 PF09681 Phage_rep_org_N: N-te 67.5 9.2 0.0002 29.2 3.9 47 21-76 52-98 (121)
454 PF03965 Penicillinase_R: Peni 67.4 4.5 9.7E-05 30.4 2.2 53 7-60 3-55 (115)
455 KOG2165 Anaphase-promoting com 65.7 9 0.0002 37.7 4.3 49 21-74 615-663 (765)
456 PRK09334 30S ribosomal protein 65.2 6.6 0.00014 28.0 2.6 36 21-60 40-75 (86)
457 COG0144 Sun tRNA and rRNA cyto 65.2 31 0.00068 31.5 7.6 72 155-228 149-235 (355)
458 TIGR02063 RNase_R ribonuclease 64.9 9.7 0.00021 38.2 4.7 58 11-73 6-64 (709)
459 COG5631 Predicted transcriptio 64.7 11 0.00025 30.1 4.0 57 15-76 91-147 (199)
460 KOG2782 Putative SAM dependent 64.4 5.4 0.00012 33.8 2.3 51 151-203 32-83 (303)
461 PRK00082 hrcA heat-inducible t 64.4 6.9 0.00015 35.5 3.2 52 15-75 19-72 (339)
462 PF03374 ANT: Phage antirepres 64.4 13 0.00028 27.5 4.3 51 11-73 13-63 (111)
463 PF05402 PqqD: Coenzyme PQQ sy 64.1 4.4 9.6E-05 27.1 1.5 43 12-57 22-68 (68)
464 PF11972 HTH_13: HTH DNA bindi 63.6 10 0.00022 24.5 3.0 46 12-71 4-50 (54)
465 PF01418 HTH_6: Helix-turn-hel 63.5 5.1 0.00011 27.8 1.8 31 21-55 33-63 (77)
466 KOG1099 SAM-dependent methyltr 63.5 7.9 0.00017 33.1 3.1 71 162-236 39-134 (294)
467 PLN03238 probable histone acet 63.4 12 0.00026 33.0 4.3 45 9-60 210-254 (290)
468 KOG2798 Putative trehalase [Ca 63.2 30 0.00065 31.1 6.7 27 165-191 151-177 (369)
469 PRK09464 pdhR transcriptional 62.9 9.7 0.00021 32.7 3.8 37 20-60 31-68 (254)
470 COG1041 Predicted DNA modifica 62.9 31 0.00066 31.4 6.9 65 162-228 195-270 (347)
471 COG2524 Predicted transcriptio 62.7 13 0.00027 32.4 4.2 57 18-81 21-78 (294)
472 PRK10225 DNA-binding transcrip 62.4 9.6 0.00021 32.8 3.7 37 20-60 30-67 (257)
473 PF11312 DUF3115: Protein of u 62.3 15 0.00033 32.8 4.8 38 165-202 87-147 (315)
474 PRK04984 fatty acid metabolism 62.3 10 0.00022 32.1 3.8 37 20-60 28-65 (239)
475 PRK09990 DNA-binding transcrip 62.0 11 0.00024 32.3 3.9 37 20-60 28-65 (251)
476 PF11599 AviRa: RRNA methyltra 61.7 14 0.0003 31.4 4.2 43 162-204 49-94 (246)
477 PRK13239 alkylmercury lyase; P 61.5 7.1 0.00015 32.7 2.5 41 8-53 23-63 (206)
478 COG1255 Uncharacterized protei 61.5 38 0.00083 25.7 6.1 62 164-230 13-78 (129)
479 TIGR02812 fadR_gamma fatty aci 61.4 11 0.00024 31.9 3.8 37 20-60 27-64 (235)
480 PF13542 HTH_Tnp_ISL3: Helix-t 61.3 11 0.00023 23.6 2.8 38 6-50 14-51 (52)
481 PF14314 Methyltrans_Mon: Viru 61.2 16 0.00035 36.2 5.2 43 147-192 308-350 (675)
482 PF09821 AAA_assoc_C: C-termin 61.2 7.5 0.00016 29.7 2.4 46 27-82 2-47 (120)
483 KOG2918 Carboxymethyl transfer 61.0 13 0.00028 33.2 4.1 40 162-201 85-126 (335)
484 TIGR02404 trehalos_R_Bsub treh 60.3 10 0.00022 32.1 3.4 40 24-71 26-65 (233)
485 PF09106 SelB-wing_2: Elongati 60.2 10 0.00022 24.7 2.7 36 21-60 16-54 (59)
486 PRK15450 signal transduction p 59.7 3.5 7.6E-05 28.8 0.3 61 195-255 23-85 (85)
487 PF00356 LacI: Bacterial regul 59.7 5 0.00011 25.0 1.0 13 24-36 1-13 (46)
488 COG2933 Predicted SAM-dependen 59.6 22 0.00047 31.2 5.1 66 162-229 209-277 (358)
489 PRK09392 ftrB transcriptional 59.6 12 0.00027 31.5 3.8 42 22-74 173-214 (236)
490 PF03297 Ribosomal_S25: S25 ri 59.5 10 0.00022 28.2 2.7 36 21-60 58-93 (105)
491 COG0640 ArsR Predicted transcr 59.4 12 0.00026 26.2 3.2 50 6-60 24-73 (110)
492 PRK13626 transcriptional regul 59.4 8.8 0.00019 37.2 3.2 45 12-60 13-57 (552)
493 PF13936 HTH_38: Helix-turn-he 59.1 7.8 0.00017 23.7 1.8 24 21-48 19-42 (44)
494 PRK09333 30S ribosomal protein 59.0 13 0.00028 29.5 3.4 58 12-76 58-125 (150)
495 PF13551 HTH_29: Winged helix- 59.0 7.4 0.00016 28.5 2.1 28 24-55 14-41 (112)
496 PRK14999 histidine utilization 58.8 10 0.00023 32.3 3.2 43 21-71 34-77 (241)
497 TIGR02277 PaaX_trns_reg phenyl 58.8 14 0.00031 32.5 4.1 56 15-76 10-68 (280)
498 PF10771 DUF2582: Protein of u 58.7 12 0.00026 25.2 2.8 39 12-55 13-51 (65)
499 PHA02591 hypothetical protein; 58.7 9.9 0.00021 26.5 2.4 32 12-49 51-82 (83)
500 TIGR02325 C_P_lyase_phnF phosp 58.2 11 0.00024 31.8 3.3 41 24-72 34-74 (238)
No 1
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=4e-35 Score=261.39 Aligned_cols=239 Identities=22% Similarity=0.342 Sum_probs=184.3
Q ss_pred hHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-cccc
Q 046375 2 LALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVT 80 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~ 80 (276)
++|++|+++||||+|.+ +|.|++|||+++|++| +.+.+||++|+++|+|++.+ ++|++|+.+. ++..
T Consensus 5 ~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~----~~~~~lL~~L~~lgll~~~~------~~y~~t~~~~~~l~~ 72 (306)
T TIGR02716 5 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVP----PRLEMLLETLRQMRVINLED------GKWSLTEFADYMFSP 72 (306)
T ss_pred HHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCCh----HHHHHHHHHHHhCCCeEecC------CcEecchhHHhhccC
Confidence 58999999999999987 8999999999999988 99999999999999999876 8999999997 5544
Q ss_pred CCCCC--ChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHH-hhhhhhHHHHHhc
Q 046375 81 GSDSN--QLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMA-CNAKFLTREILAG 157 (276)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~ 157 (276)
+++.. ++.....+. .......|.+|+++++++. +|... +.+....++.. .|...|. .......+.+++.
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~~-~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 144 (306)
T TIGR02716 73 TPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-NFKGQ-----VPYPPVTREDN-LYFEEIHRSNAKFAIQLLLEE 144 (306)
T ss_pred CccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCCc-ccccc-----cCCCCCCHHHH-HhHHHHHHhcchhHHHHHHHH
Confidence 44210 112233322 1123467899999998533 23221 22222233332 3444444 3334455667787
Q ss_pred cccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCCccEEEEc
Q 046375 158 YKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPNADALLLK 229 (276)
Q Consensus 158 ~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~~D~i~l~ 229 (276)
++ +++..+|||||||+|.+++.+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|++|+|+++
T Consensus 145 ~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~ 222 (306)
T TIGR02716 145 AK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 222 (306)
T ss_pred cC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeE
Confidence 77 88889999999999999999999999999999999999987754 5799999999997 67889999999
Q ss_pred ccccCCCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCce
Q 046375 230 WVLHNWSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 230 ~vlh~~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~ 259 (276)
+++|+|+++.+ -++.+||.++|+++||+.+
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v 302 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 302 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCee
Confidence 99999998764 0236899999999999988
Q ss_pred EEE
Q 046375 260 RII 262 (276)
Q Consensus 260 ~~~ 262 (276)
+++
T Consensus 303 ~~~ 305 (306)
T TIGR02716 303 TMV 305 (306)
T ss_pred Eec
Confidence 764
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3e-35 Score=257.40 Aligned_cols=267 Identities=36% Similarity=0.672 Sum_probs=232.1
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCC--CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDS--PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~--~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
++++++|+|+|+||+|... ++ ..|||..+-. +| .+...+.|+||.|++.++++..-. +.+ .|++++.++++
T Consensus 20 ~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~-~~p~ll~r~lr~L~s~~i~k~~~~--~~~-~Y~~~~~~~~~ 92 (342)
T KOG3178|consen 20 PMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNP-EAPVLLDRILRLLVSYSILKCRLV--GGE-VYSATPVCKYF 92 (342)
T ss_pred HHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCC-CChhHHHHHHHHHHHhhhceeeee--cce-eeeccchhhhh
Confidence 5789999999999999985 22 7777777763 22 255799999999999999998862 012 79999999865
Q ss_pred ccCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhcc
Q 046375 79 VTGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGY 158 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 158 (276)
.+++...++..++...++...++.|.++.++++.+..+|..++|+..+++...+......|+++|...+....+.++..+
T Consensus 93 l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~ 172 (342)
T KOG3178|consen 93 LKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVY 172 (342)
T ss_pred eecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 54332227888877776778899999999999999888999999888999988888888999999998888888888877
Q ss_pred ccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-CCeEEEEccCCCCCCCccEEEEcccccCCCc
Q 046375 159 KHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVY-DGVTHVSGDMFHTIPNADALLLKWVLHNWSD 237 (276)
Q Consensus 159 ~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~-~ri~~~~~d~~~~~p~~D~i~l~~vlh~~~~ 237 (276)
. .|+.....||||||.|..+..++..||+++++.+|+|.+++.+... ..|+++.||+|++.|.+|+|++.+|||+|+|
T Consensus 173 ~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 173 T-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTD 251 (342)
T ss_pred c-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCCh
Confidence 6 4778999999999999999999999999999999999999998875 7899999999999999999999999999999
Q ss_pred ccc-----------------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 238 EAC-----------------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 238 ~~~-----------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++| +|+.+||+.++.++||.+..+.-.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 998 589999999999999999999999
Q ss_pred CCccEEEEEec
Q 046375 265 PALQCIIESYP 275 (276)
Q Consensus 265 ~~~~~vi~a~~ 275 (276)
+..+++|+++|
T Consensus 332 ~~~~~~Ie~~k 342 (342)
T KOG3178|consen 332 AYSYSVIEFHK 342 (342)
T ss_pred cCccchheeCC
Confidence 88999999876
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=2.1e-34 Score=248.37 Aligned_cols=173 Identities=35% Similarity=0.640 Sum_probs=151.5
Q ss_pred CCeEecCccccccccCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHh
Q 046375 66 EPLYGLTHSSRWLVTGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMAC 145 (276)
Q Consensus 66 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 145 (276)
.++|++|++|+.|..+++..++..++.++..+..++.|.+|.+++++|+++|+..+|.++|+++.++|+..+.|+++|+.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 47999999999666665422677777776678899999999999999998899999988999999999999999999999
Q ss_pred hhhhhH-HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCcc
Q 046375 146 NAKFLT-REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNAD 224 (276)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D 224 (276)
.+.... +.++..++ +++..+|||||||+|.++.+++++||+++++++|+|++++.+++.+||++++|||++++|.+|
T Consensus 83 ~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 887777 78888898 899999999999999999999999999999999999999988889999999999999999999
Q ss_pred EEEEcccccCCCcccc
Q 046375 225 ALLLKWVLHNWSDEAC 240 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~ 240 (276)
+|++++|||+|+|++|
T Consensus 161 ~~~l~~vLh~~~d~~~ 176 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDC 176 (241)
T ss_dssp EEEEESSGGGS-HHHH
T ss_pred ceeeehhhhhcchHHH
Confidence 9999999999999998
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=1.6e-12 Score=111.16 Aligned_cols=121 Identities=14% Similarity=0.196 Sum_probs=98.2
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP-- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p-- 221 (276)
.++..++ .....+|||+|||+|.++..+++.. |+.+++++|+ |.+++.+++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3455555 5667899999999999999999986 7789999999 888877654 3589999999987 565
Q ss_pred CccEEEEcccccCCCcccc------------------c------------------------------------------
Q 046375 222 NADALLLKWVLHNWSDEAC------------------E------------------------------------------ 241 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~------------------~------------------------------------------ 241 (276)
.+|+|++.+++|++++... +
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQEST 193 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHH
Confidence 3999999999998876543 0
Q ss_pred ---cCHHHHHHhHhhCCCCceEEEecC-CccEEEEEec
Q 046375 242 ---RTELEWKNIPEKGGSPRYRIIKIP-ALQCIIESYP 275 (276)
Q Consensus 242 ---rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~a~~ 275 (276)
.+.+++.++|+++||+++++.... |..+++.++|
T Consensus 194 ~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 194 RDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 135788999999999999998885 6778888775
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.44 E-value=1.3e-13 Score=118.09 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=58.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCC--ccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPN--ADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~--~D~i~l~~ 230 (276)
...+.+|||||||+|.++..++++. |+.+++++|. ++|++.+++ ..+|+++.+|..+ |+|+ +|+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999885 6789999998 999998875 3589999999998 8884 99999999
Q ss_pred cccCCCcccc---------------------------------------------------------------ccCHHHH
Q 046375 231 VLHNWSDEAC---------------------------------------------------------------ERTELEW 247 (276)
Q Consensus 231 vlh~~~~~~~---------------------------------------------------------------~rt~~e~ 247 (276)
.+|+.+|.+. -.+.+++
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~ 204 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEEL 204 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------------
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccc
Confidence 9999998665 0379999
Q ss_pred HHhHhhCCCCceEEEec-CCccEEEEEec
Q 046375 248 KNIPEKGGSPRYRIIKI-PALQCIIESYP 275 (276)
Q Consensus 248 ~~ll~~aGf~~~~~~~~-~~~~~vi~a~~ 275 (276)
.++|+++||+.++..+. .|..++..+.|
T Consensus 205 ~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 205 KELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------------
T ss_pred cccccccccccccccccccccccccccCC
Confidence 99999999999998776 45566665544
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.6e-12 Score=109.39 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=97.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCC--ccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPN--ADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~--~D~i~l~~vl 232 (276)
..+.+|||||||+|.++..+++..++.+++++|. +.|++.+++ -..|+|+.+|..+ |+|+ ||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3679999999999999999999999999999999 999999876 1239999999999 9994 9999999999
Q ss_pred cCCCcccc----------------------------------------------------------------ccCHHHHH
Q 046375 233 HNWSDEAC----------------------------------------------------------------ERTELEWK 248 (276)
Q Consensus 233 h~~~~~~~----------------------------------------------------------------~rt~~e~~ 248 (276)
|+.+|.+. ..+.+++.
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~ 209 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELK 209 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHH
Confidence 99998775 13799999
Q ss_pred HhHhhCCCCceEEEec-CCccEEEEEec
Q 046375 249 NIPEKGGSPRYRIIKI-PALQCIIESYP 275 (276)
Q Consensus 249 ~ll~~aGf~~~~~~~~-~~~~~vi~a~~ 275 (276)
++++++||..+...+. .|...+..+.|
T Consensus 210 ~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 210 QMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 9999999999886655 45566666554
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.39 E-value=5.5e-12 Score=110.01 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCCC-CCCC--ccEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMFH-TIPN--ADALL 227 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~-~~p~--~D~i~ 227 (276)
.....+|||||||+|.++..+++.+ |+.+++++|. ++|++.+++ .++++++.+|+.+ |+|+ +|+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999885 6789999999 999987753 2489999999987 7773 99999
Q ss_pred EcccccCCCcccc--------------------------------------------------------------ccCHH
Q 046375 228 LKWVLHNWSDEAC--------------------------------------------------------------ERTEL 245 (276)
Q Consensus 228 l~~vlh~~~~~~~--------------------------------------------------------------~rt~~ 245 (276)
++.++|++++.+. ..+.+
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~ 230 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE 230 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence 9999999987654 02678
Q ss_pred HHHHhHhhCCCCceEEEecC-CccEEEEEe
Q 046375 246 EWKNIPEKGGSPRYRIIKIP-ALQCIIESY 274 (276)
Q Consensus 246 e~~~ll~~aGf~~~~~~~~~-~~~~vi~a~ 274 (276)
|+.++|+++||+.++..... +...+..|+
T Consensus 231 el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 231 ELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 89999999999999987775 445555554
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.39 E-value=3.5e-13 Score=115.97 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=67.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCCccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKS--YPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPNADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~--~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~~D~i~l~~v 231 (276)
....+|||||||+|.++..++++ +|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +++.+|+++++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35679999999999999999997 48899999999 999988765 3479999999988 6778999999999
Q ss_pred ccCCCcccc
Q 046375 232 LHNWSDEAC 240 (276)
Q Consensus 232 lh~~~~~~~ 240 (276)
+|++++++.
T Consensus 132 l~~~~~~~~ 140 (239)
T TIGR00740 132 LQFLPPEDR 140 (239)
T ss_pred hhhCCHHHH
Confidence 999987543
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=107.24 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=72.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC--CccEEEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP--NADALLL 228 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p--~~D~i~l 228 (276)
..+++.+. .....+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+++++.+|+.+..+ .||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45677766 66779999999999999999999999999999999 999988865 368999999876222 4999999
Q ss_pred cccccCCCcccc
Q 046375 229 KWVLHNWSDEAC 240 (276)
Q Consensus 229 ~~vlh~~~~~~~ 240 (276)
+.++|+.++...
T Consensus 96 ~~~l~~~~d~~~ 107 (255)
T PRK14103 96 NAALQWVPEHAD 107 (255)
T ss_pred ehhhhhCCCHHH
Confidence 999999887443
No 10
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=1.8e-11 Score=104.00 Aligned_cols=137 Identities=13% Similarity=0.025 Sum_probs=99.5
Q ss_pred hhhcccChHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 046375 126 IDLASKDQQFNKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP 204 (276)
Q Consensus 126 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~ 204 (276)
|+.+..++.....+...|..........+++.+.....+..+|||||||+|.++..+++. +.+++++|. |.++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 444444444445555555433333444455544311345789999999999999999886 458999998 88998776
Q ss_pred C-------CCCeEEEEccCCCCCCCccEEEEcccccCCCcccc-------------------------------------
Q 046375 205 V-------YDGVTHVSGDMFHTIPNADALLLKWVLHNWSDEAC------------------------------------- 240 (276)
Q Consensus 205 ~-------~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~~~~~~------------------------------------- 240 (276)
+ .+++++..+|+.+..+.+|+|++..++|++++++.
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 174 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFP 174 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCc
Confidence 5 25899999998773356999999999988876432
Q ss_pred ---------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 241 ---------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 241 ---------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
..+.+++.++++++||+++.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 175 GSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred CcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 026899999999999999988655
No 11
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.32 E-value=5.8e-11 Score=101.54 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=96.7
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p- 221 (276)
.++..+. .....+|||||||.|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3445444 34568999999999999999999998 789999998 777776655 3579999999987 443
Q ss_pred -CccEEEEcccccCCCcccc------------------------------------------------------------
Q 046375 222 -NADALLLKWVLHNWSDEAC------------------------------------------------------------ 240 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~------------------------------------------------------------ 240 (276)
.+|+|++++++|.+++...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAES 199 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHH
Confidence 3999999999998876443
Q ss_pred ---ccCHHHHHHhHhhCCCCceEEEec-CCccEEEEEec
Q 046375 241 ---ERTELEWKNIPEKGGSPRYRIIKI-PALQCIIESYP 275 (276)
Q Consensus 241 ---~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~a~~ 275 (276)
.++..+|.++|+++||+.+++... .+...++.|+|
T Consensus 200 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 200 IRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 014578999999999999998886 46789999876
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=107.76 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=91.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC--C
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP--N 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p--~ 222 (276)
...++..++ +....+|||||||+|..+..+++.+ +.+++++|+ |.+++.+++ .++|+++.+|+.+ |+| .
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 455667666 7788999999999999999998875 679999999 888877765 4689999999987 676 3
Q ss_pred ccEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 223 ADALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
||+|++..++|+++.++. ..+.++|.++|+++||++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 999999988887764322 026789999999999999
Q ss_pred eEEEecC
Q 046375 259 YRIIKIP 265 (276)
Q Consensus 259 ~~~~~~~ 265 (276)
++..++.
T Consensus 198 v~~~d~~ 204 (263)
T PTZ00098 198 VVAKDIS 204 (263)
T ss_pred eeEEeCc
Confidence 9988764
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=1.9e-11 Score=109.71 Aligned_cols=103 Identities=24% Similarity=0.274 Sum_probs=88.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC--CccEEEEcccccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWS 236 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~ 236 (276)
...+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|+|++++++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999999899999998 888888766 4579999999987 665 399999999999999
Q ss_pred cccc-------------------------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 237 DEAC-------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 237 ~~~~-------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
+.+. ..+.+|+.++|+++||+.+++.+.+.
T Consensus 193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 193 DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 8654 02679999999999999999887643
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=7.8e-12 Score=108.21 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCCceEEEeeCCccHHHHHHHH--HCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCCccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVK--SYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPNADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~--~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~~D~i~l~~v 231 (276)
+...+|||||||+|..+..+++ .+|+.+++++|. |.+++.+++ ..+++++.+|+.+ +++.+|+++++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4568999999999999999988 469999999998 999988865 3489999999987 6677999999999
Q ss_pred ccCCCcccc
Q 046375 232 LHNWSDEAC 240 (276)
Q Consensus 232 lh~~~~~~~ 240 (276)
+|.+++++.
T Consensus 135 l~~l~~~~~ 143 (247)
T PRK15451 135 LQFLEPSER 143 (247)
T ss_pred HHhCCHHHH
Confidence 999986553
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.29 E-value=2.6e-11 Score=109.65 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=85.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
....+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .++|+++.+|+.+ |++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999988 779999999 888876654 3689999999987 676 3999999999
Q ss_pred ccCCCcccc----------------------------c-----------------------cCHHHHHHhHhhCCCCceE
Q 046375 232 LHNWSDEAC----------------------------E-----------------------RTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 232 lh~~~~~~~----------------------------~-----------------------rt~~e~~~ll~~aGf~~~~ 260 (276)
+|+++|... + .+.++|.++++++||..++
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 999987554 0 1578999999999999998
Q ss_pred EEec
Q 046375 261 IIKI 264 (276)
Q Consensus 261 ~~~~ 264 (276)
+.+.
T Consensus 276 ~~d~ 279 (340)
T PLN02244 276 TEDW 279 (340)
T ss_pred eeeC
Confidence 8765
No 16
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.25 E-value=3.2e-11 Score=102.62 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=84.3
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEcccccCC
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLKWVLHNW 235 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~~vlh~~ 235 (276)
++|||||||.|.++..+++.+|+.+++++|+ |.+++.+++ .++++++.+|+.+ ++++ +|+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777776654 5689999999976 5665 9999999999988
Q ss_pred Ccccc------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 236 SDEAC------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 236 ~~~~~------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
++... ..+..+|.++++++||++++.....
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 76433 1257899999999999999987763
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.24 E-value=8.7e-11 Score=99.40 Aligned_cols=121 Identities=20% Similarity=0.186 Sum_probs=96.1
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC--Cc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP--NA 223 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p--~~ 223 (276)
.++..+. .....+|||+|||.|.++..+++.+|. .+++++|. |.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence 3444444 446789999999999999999999997 78999998 788777654 3579999999987 554 39
Q ss_pred cEEEEcccccCCCcccc------------------c--------------------------------------------
Q 046375 224 DALLLKWVLHNWSDEAC------------------E-------------------------------------------- 241 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~------------------~-------------------------------------------- 241 (276)
|+|+++.++|+.++... +
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRA 187 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHh
Confidence 99999999998776432 0
Q ss_pred -cCHHHHHHhHhhCCCCceEEEecCC-ccEEEEEec
Q 046375 242 -RTELEWKNIPEKGGSPRYRIIKIPA-LQCIIESYP 275 (276)
Q Consensus 242 -rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~a~~ 275 (276)
.+..+|.++|+++||+.+++.+..+ ...+++++|
T Consensus 188 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 188 FPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1467899999999999998888754 577888775
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=5.1e-11 Score=106.87 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=84.2
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC-------CCCCeEEEEccCCC-CCCC-c
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP-------VYDGVTHVSGDMFH-TIPN-A 223 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~-------~~~ri~~~~~d~~~-~~p~-~ 223 (276)
++..++ ....++|||||||+|.++..+++..|. +++++|. +.++...+ ...+|+++.+|+.+ |.++ |
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 334689999999999999999999876 5999998 55554321 14589999999877 5554 9
Q ss_pred cEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCCCce
Q 046375 224 DALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf~~~ 259 (276)
|+|++..++|+..+... .+|.+++..+|+++||+.+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 99999999998876544 1378999999999999999
Q ss_pred EEEec
Q 046375 260 RIIKI 264 (276)
Q Consensus 260 ~~~~~ 264 (276)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 88754
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.22 E-value=1.6e-11 Score=92.72 Aligned_cols=91 Identities=22% Similarity=0.357 Sum_probs=72.5
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccC-CC-CCC-CccEEEEcc-cc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDM-FH-TIP-NADALLLKW-VL 232 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~-~~-~~p-~~D~i~l~~-vl 232 (276)
..+|||||||+|.++..+++++|+.+++++|. |.+++.+++ .+||+++.+|+ .. +.+ .||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 999987765 68999999999 33 343 599999999 67
Q ss_pred cCCCc-cccccCHHHHHHhHhhCC
Q 046375 233 HNWSD-EACERTELEWKNIPEKGG 255 (276)
Q Consensus 233 h~~~~-~~~~rt~~e~~~ll~~aG 255 (276)
|.+.+ ++..+..+.+.++|..-|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCc
Confidence 75544 333445556666666544
No 20
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=1.3e-10 Score=99.50 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=79.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC--CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKS----YPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP--NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p--~~D~i~l~~ 230 (276)
..+..+|||||||+|.++..|++. .|+.+++++|+ |.+++.+++ ..++++..++... +.+ .+|+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 356789999999999999888764 46789999999 999988876 3456666665433 333 499999999
Q ss_pred cccCCCcccc-----------------------------------------------------ccCHHHHHHhHhhCCCC
Q 046375 231 VLHNWSDEAC-----------------------------------------------------ERTELEWKNIPEKGGSP 257 (276)
Q Consensus 231 vlh~~~~~~~-----------------------------------------------------~rt~~e~~~ll~~aGf~ 257 (276)
++|++++++. -+|.+|+.+++++ ||+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~ 216 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALARRLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWR 216 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcCeeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCe
Confidence 9999998652 1378899999999 999
Q ss_pred ceEEEec
Q 046375 258 RYRIIKI 264 (276)
Q Consensus 258 ~~~~~~~ 264 (276)
+....+.
T Consensus 217 ~~~~~~~ 223 (232)
T PRK06202 217 VERQWPF 223 (232)
T ss_pred EEeccce
Confidence 8776553
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=1.1e-10 Score=110.37 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=90.6
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC-C-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP-N- 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p-~- 222 (276)
..+++.+. .....+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| +
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34566665 5667899999999999999999876 779999999 788877654 4589999999988 566 3
Q ss_pred ccEEEEcccccCCCcccc-----------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 223 ADALLLKWVLHNWSDEAC-----------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~-----------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|+|++..++|++++.+. .++..++.++++++||+++.+
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 999999999999887654 137899999999999999877
Q ss_pred Eec
Q 046375 262 IKI 264 (276)
Q Consensus 262 ~~~ 264 (276)
...
T Consensus 413 ~d~ 415 (475)
T PLN02336 413 EDR 415 (475)
T ss_pred ecc
Confidence 654
No 22
>PRK05785 hypothetical protein; Provisional
Probab=99.20 E-value=2.8e-10 Score=97.12 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=88.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCCC--ccEEEEcccccCCCccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIPN--ADALLLKWVLHNWSDEA 239 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~~~ 239 (276)
...+|||||||+|.++..+++++ +.+++++|. ++|++.+++. ..++.+|+.+ |+++ +|+|+++.++|+++|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46899999999999999999987 678999999 9999988763 3467888887 7763 99999999999998866
Q ss_pred c-------------------------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 240 C-------------------------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 240 ~-------------------------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
. -.+.+++.++|+++| ..
T Consensus 128 ~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~ 206 (226)
T PRK05785 128 KVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DI 206 (226)
T ss_pred HHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-Cc
Confidence 5 137999999999984 66
Q ss_pred eEEEec-CCccEEEEEec
Q 046375 259 YRIIKI-PALQCIIESYP 275 (276)
Q Consensus 259 ~~~~~~-~~~~~vi~a~~ 275 (276)
++.... .|..++..+.|
T Consensus 207 ~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 207 KVYEERGLGLVYFVVGSS 224 (226)
T ss_pred eEEEEccccEEEEEEEee
Confidence 777766 45567777765
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=7.4e-11 Score=102.54 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--CCC-
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--TIP- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~~p- 221 (276)
.+++.+. ++..+|||||||+|.++..+++. +.+++++|+ |.+++.+++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 3444443 45689999999999999999997 468999999 899988765 3689999999865 333
Q ss_pred -CccEEEEcccccCCCcccc------------------------------------------------------ccCHHH
Q 046375 222 -NADALLLKWVLHNWSDEAC------------------------------------------------------ERTELE 246 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~------------------------------------------------------~rt~~e 246 (276)
.+|+|++..++|++++... ..+.++
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 3999999999999876543 014689
Q ss_pred HHHhHhhCCCCceEEEecC
Q 046375 247 WKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 247 ~~~ll~~aGf~~~~~~~~~ 265 (276)
+.++|+++||+++...-+.
T Consensus 191 l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 191 VYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHCCCeEeeeeeEE
Confidence 9999999999998766543
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.18 E-value=4.7e-11 Score=95.53 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=66.0
Q ss_pred CCceEEEeeCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CC-CccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIV-KSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IP-NADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~-~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p-~~D~i~l~~v 231 (276)
+..+|||+|||+|.++..++ +.+|+.+++++|+ |.+++.+++ .++++|..+|+.+ + ++ .+|+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5689999999999 999988876 4589999999999 4 44 5999999999
Q ss_pred ccCCCccc
Q 046375 232 LHNWSDEA 239 (276)
Q Consensus 232 lh~~~~~~ 239 (276)
+|++++..
T Consensus 83 l~~~~~~~ 90 (152)
T PF13847_consen 83 LHHFPDPE 90 (152)
T ss_dssp GGGTSHHH
T ss_pred hhhccCHH
Confidence 99988764
No 25
>PRK06922 hypothetical protein; Provisional
Probab=99.17 E-value=8.7e-11 Score=112.08 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=86.5
Q ss_pred CcchhhcccChHHHHHHHHHHHhhhhh--hHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHH
Q 046375 123 DAYIDLASKDQQFNKIFNEGMACNAKF--LTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHV 199 (276)
Q Consensus 123 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~ 199 (276)
..+|+++..+++..++|...|...... ........++ +....+|||||||+|.++..+++++|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 357899888888888888777653322 1122223344 55678999999999999999999999999999999 778
Q ss_pred HhhCCC-----CCCeEEEEccCCC-C--CC--CccEEEEcccccCCC
Q 046375 200 ITTAPV-----YDGVTHVSGDMFH-T--IP--NADALLLKWVLHNWS 236 (276)
Q Consensus 200 ~~~a~~-----~~ri~~~~~d~~~-~--~p--~~D~i~l~~vlh~~~ 236 (276)
++.+++ ..+++++.+|..+ | ++ .+|+|+++.++|+|.
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~ 501 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELF 501 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhh
Confidence 887764 3468889999876 3 44 399999999999863
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=1.8e-10 Score=102.53 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=84.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC-------CCCCeEEEEccCCC-CC-C
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP-------VYDGVTHVSGDMFH-TI-P 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~-------~~~ri~~~~~d~~~-~~-p 221 (276)
..++..++ ....++|||||||+|.++..++...+. +++++|. +.++..++ ...++.+..+++.+ +. +
T Consensus 111 ~~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 111 DRVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 34555554 445689999999999999999998775 7899997 66654321 14678888888866 33 3
Q ss_pred CccEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCCC
Q 046375 222 NADALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGSP 257 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf~ 257 (276)
.||+|++..+||++++... ..+..++..+|+++||+
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCe
Confidence 5999999999999876643 02688999999999999
Q ss_pred ceEEEec
Q 046375 258 RYRIIKI 264 (276)
Q Consensus 258 ~~~~~~~ 264 (276)
.+++...
T Consensus 268 ~V~i~~~ 274 (314)
T TIGR00452 268 NFRILDV 274 (314)
T ss_pred EEEEEec
Confidence 9988654
No 27
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.15 E-value=1.8e-10 Score=95.45 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=82.4
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCCC-ccEE
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIPN-ADAL 226 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p~-~D~i 226 (276)
+..++ .....+|||||||+|.++..+++++|+.+++++|. |.+++.+++ .++++++.+|...++++ +|+|
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 35555 56778999999999999999999999999999999 888887765 35799999998665654 9999
Q ss_pred EEcccccCCCc--ccc----------------ccCHHHHHHhHhhCCCCceEE
Q 046375 227 LLKWVLHNWSD--EAC----------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 227 ~l~~vlh~~~~--~~~----------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
++....+.+.+ +.+ ..+..++.+++++.||+.+++
T Consensus 102 ~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 102 FIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 99876554322 111 236788899999999987665
No 28
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.14 E-value=3.2e-10 Score=96.68 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=81.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCCCccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIPNADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p~~D~i~l~~vlh~ 234 (276)
....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .+++++..+|+..+-..+|+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4568999999999999999998754 5999998 888887765 25899999994333335999999999988
Q ss_pred CCcccc----------------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 235 WSDEAC----------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 235 ~~~~~~----------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
+++++. ..+..+|.++++++||++.++.+..
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 886543 0156889999999999999887653
No 29
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.12 E-value=7.7e-10 Score=96.64 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=84.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhhCCCC--------------
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGG----LISEIVKSYP-----HIKGINFDL-PHVITTAPVY-------------- 206 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~p-----~l~~~~~Dl-p~~~~~a~~~-------------- 206 (276)
.+.++.... ..+..+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 88 lp~l~~~~~--~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 88 LPLLIASRR--HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred hHHHHHhcC--CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 344444332 3456899999999996 5667777765 578999999 9999877651
Q ss_pred -------------------CCeEEEEccCCCC-CC--CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCce
Q 046375 207 -------------------DGVTHVSGDMFHT-IP--NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 207 -------------------~ri~~~~~d~~~~-~p--~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
++|+|..+|+.++ .| .+|+|+++++||++++++..+...++.+.|..-|+=++
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3799999999983 43 49999999999999988888889999999999886544
No 30
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.12 E-value=1.5e-10 Score=97.21 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=69.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCCC--CccEEEEcccccCCCc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~~~~ 237 (276)
.++..+|||||||+|.++..+++..|+.+++++|+ |.+++.+++ ..++++..+|+.+|++ .+|+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34678999999999999999999989999999998 999999887 5678899999988765 3999999999998876
Q ss_pred ccc
Q 046375 238 EAC 240 (276)
Q Consensus 238 ~~~ 240 (276)
++.
T Consensus 121 ~~~ 123 (204)
T TIGR03587 121 DNL 123 (204)
T ss_pred HHH
Confidence 544
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.11 E-value=2.1e-10 Score=102.58 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=81.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~vl 232 (276)
...+|||||||.|.++..+++ ++.+++++|. +.+++.++. ..+|+++.+|+.+ +++ .||+|++..||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999999886 4778999998 888887764 2489999999876 444 39999999999
Q ss_pred cCCCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 233 HNWSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 233 h~~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
|++++... ..+.+|+.++|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 99987554 0268999999999999998874
Q ss_pred ec
Q 046375 263 KI 264 (276)
Q Consensus 263 ~~ 264 (276)
.+
T Consensus 289 G~ 290 (322)
T PLN02396 289 GF 290 (322)
T ss_pred ee
Confidence 33
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.11 E-value=6.6e-10 Score=94.80 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=86.9
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--C
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--N 222 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~ 222 (276)
.++..++ .....+|||+|||.|.++..+++.+ |..+++++|+ |.+++.+++ ..++++..+|+.+ +++ .
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3445555 6678899999999999999999998 8889999998 777766644 4679999999876 555 3
Q ss_pred ccEEEEcccccCCCcccc------------------c------------------------------cCHHHHHHhHhhC
Q 046375 223 ADALLLKWVLHNWSDEAC------------------E------------------------------RTELEWKNIPEKG 254 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~------------------~------------------------------rt~~e~~~ll~~a 254 (276)
+|+|++.+++|++++... + .+..+|.++|+++
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 167 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREA 167 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHc
Confidence 999999999999877543 0 1246789999999
Q ss_pred CCCceEEEe
Q 046375 255 GSPRYRIIK 263 (276)
Q Consensus 255 Gf~~~~~~~ 263 (276)
||+.+++..
T Consensus 168 Gf~~~~~~~ 176 (241)
T PRK08317 168 GLTDIEVEP 176 (241)
T ss_pred CCCceeEEE
Confidence 999876643
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.08 E-value=1.1e-09 Score=92.49 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=69.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCC------CeEEEeec-hHHHhhCCC---------CCCeEEEEccCCC-CCCC--c
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPH------IKGINFDL-PHVITTAPV---------YDGVTHVSGDMFH-TIPN--A 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~------l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~-~~p~--~ 223 (276)
....++|||+||+|..+.++++..+. .+++++|. |+++..+++ ..|+.++++|..+ |+|+ +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 45689999999999999999999988 78999999 999987654 4569999999998 8984 9
Q ss_pred cEEEEcccccCCCcccc
Q 046375 224 DALLLKWVLHNWSDEAC 240 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~ 240 (276)
|.|.+..-+.+|++.+.
T Consensus 179 D~yTiafGIRN~th~~k 195 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQK 195 (296)
T ss_pred eeEEEecceecCCCHHH
Confidence 99999999999998776
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.07 E-value=3.5e-10 Score=94.58 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~ 222 (276)
.+.+++.++ .....+|||+|||.|.++..++++ +.+++++|+ |.+++.+++ ..++++...|+.+ ++++
T Consensus 19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 456666666 556789999999999999999986 568999999 888887765 2458889999876 4554
Q ss_pred -ccEEEEcccccCCCcccc
Q 046375 223 -ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 -~D~i~l~~vlh~~~~~~~ 240 (276)
+|+|+++.++|++++++.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~ 113 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTI 113 (197)
T ss_pred CcCEEEEecchhhCCHHHH
Confidence 999999999998876554
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.05 E-value=1.4e-09 Score=95.30 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP--NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p--~~D~i~l~~ 230 (276)
+....+|||||||+|..+..+++.. |+.+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5567899999999999988777764 6678999998 889988775 3689999999987 665 399999999
Q ss_pred cccCCCcccc-------------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 231 VLHNWSDEAC-------------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 231 vlh~~~~~~~-------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
++|.+++... ..+..+|.++|+++||..+++..
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 9998876543 02678999999999999987744
No 36
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=93.52 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=77.9
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCCC--CccEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTIP--NADAL 226 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~p--~~D~i 226 (276)
+..++..+. .....+|+|+|||.|..+..|++++|+..++++|. |.|++.+++ ...++|..+|+.+-.| ..|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456777777 78899999999999999999999999999999998 999999877 7889999999987333 59999
Q ss_pred EEcccccCCCcccc
Q 046375 227 LLKWVLHNWSDEAC 240 (276)
Q Consensus 227 ~l~~vlh~~~~~~~ 240 (276)
+.+-+||..+|--.
T Consensus 97 faNAvlqWlpdH~~ 110 (257)
T COG4106 97 FANAVLQWLPDHPE 110 (257)
T ss_pred hhhhhhhhccccHH
Confidence 99999998888655
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.05 E-value=5.5e-10 Score=99.62 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=78.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCeEEEEccCCCCCCCccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y-------DGVTHVSGDMFHTIPNADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~-------~ri~~~~~d~~~~~p~~D~i~l~~v 231 (276)
+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ . .++.|..+|+.+.-..||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 578999999 889877765 1 3578888887542224999999999
Q ss_pred ccCCCcccc----------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 232 LHNWSDEAC----------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 232 lh~~~~~~~----------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+|+++++.. ..+.+++.++|+++||++....-.
T Consensus 222 L~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred EEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 988887543 015899999999999998776544
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=2e-09 Score=93.59 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=74.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCCC--CccEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTIP--NADAL 226 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~p--~~D~i 226 (276)
...++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.+..+ .+|+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345667666 66789999999999999999999999999999999 899988876 5679999999976322 59999
Q ss_pred EEcccccCCCcccc
Q 046375 227 LLKWVLHNWSDEAC 240 (276)
Q Consensus 227 ~l~~vlh~~~~~~~ 240 (276)
+++.++|..++...
T Consensus 98 ~~~~~l~~~~d~~~ 111 (258)
T PRK01683 98 FANASLQWLPDHLE 111 (258)
T ss_pred EEccChhhCCCHHH
Confidence 99999998876543
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.02 E-value=8.8e-10 Score=88.27 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEEcccccCCCc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~ 237 (276)
.....+|||||||.|.++..+.+... +++++|. +.+++. ..+.+...+... +.| .+|+|++.++||+.++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999977644 8999998 788777 223333332223 222 4999999999999997
Q ss_pred ccc--------------------------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 238 EAC--------------------------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 238 ~~~--------------------------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
... ..+.++|.++++++||++++
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 554 13799999999999999875
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.01 E-value=2.1e-09 Score=89.56 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=79.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC---CCC--CccEEEEcccccCCCc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH---TIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~---~~p--~~D~i~l~~vlh~~~~ 237 (276)
...+|||||||+|.++..+++. ....++++|. +++++.+++ .+++++.+|+.+ +++ .+|+|++++++|+.++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5679999999999999988876 4567899998 777777653 358889999865 344 3999999999999877
Q ss_pred ccc---------------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 238 EAC---------------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 238 ~~~---------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
.+. ..+.+++.++++++||+++.....
T Consensus 91 ~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 91 PEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 544 025889999999999999887554
No 41
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.01 E-value=4.3e-09 Score=86.56 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC-CccEEEEcccccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP-NADALLLKWVLHNWS 236 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p-~~D~i~l~~vlh~~~ 236 (276)
+..+|+|+|||+|.++..++++.+ +++++|+ |.+++.+++ .-+++++.+|+++..+ .+|+|+++..+|..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999887 8999998 888887765 3468889999887444 599999988777554
Q ss_pred cccc------------------------------------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEe
Q 046375 237 DEAC------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESY 274 (276)
Q Consensus 237 ~~~~------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~ 274 (276)
+... .+...++..+|++.||+...+...+-+.--++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 3210 1348899999999999999888877666666665
Q ss_pred c
Q 046375 275 P 275 (276)
Q Consensus 275 ~ 275 (276)
|
T Consensus 177 ~ 177 (179)
T TIGR00537 177 K 177 (179)
T ss_pred E
Confidence 4
No 42
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.00 E-value=2.4e-09 Score=91.45 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=79.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-CCC--CccEEEEcccccCCCc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~ 237 (276)
.+.+|||||||+|.++..+++.+|..+++++|. |.++..+++ .++++++.+|+.+ +++ .+|+|++.+++|..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999998 788776665 4589999999987 554 3999999999998866
Q ss_pred ccc--------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 238 EAC--------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 238 ~~~--------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
... ..+..+|.+++..+ |..+.+
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence 543 02567888888887 876554
No 43
>PLN03075 nicotianamine synthase; Provisional
Probab=98.99 E-value=2.8e-09 Score=93.56 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=78.8
Q ss_pred CCCceEEEeeCCccHHHHH--HHHHCCCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCCCC---CCccEEEE
Q 046375 163 DSLKSLVDVAGGIGGLISE--IVKSYPHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFHTI---PNADALLL 228 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~--l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~~~---p~~D~i~l 228 (276)
..+++|+|||||.|-++.. +++.+|+.+++++|. |++++.+++ .+||+|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999998855444 345689999999999 888877765 478999999998732 35999999
Q ss_pred cccccCCCcccc------------------cc-------------CHHHHHHhHhhCCCCceEE-EecCC-ccEEEEEec
Q 046375 229 KWVLHNWSDEAC------------------ER-------------TELEWKNIPEKGGSPRYRI-IKIPA-LQCIIESYP 275 (276)
Q Consensus 229 ~~vlh~~~~~~~------------------~r-------------t~~e~~~ll~~aGf~~~~~-~~~~~-~~~vi~a~~ 275 (276)
. ++|+|+.++. -| +.++.+ ||++..+ +|.+. ..+||.++|
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~------gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR------GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC------CeEEEEEECCCCCceeeEEEEEe
Confidence 9 9999975443 01 222222 9997665 55554 589998886
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.99 E-value=2.4e-10 Score=84.96 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=64.2
Q ss_pred EEEeeCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEEc-ccccC
Q 046375 168 LVDVAGGIGGLISEIVKSY---PHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--NADALLLK-WVLHN 234 (276)
Q Consensus 168 vlDvGgG~G~~~~~l~~~~---p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~~D~i~l~-~vlh~ 234 (276)
|||+|||+|..+..+++.+ |+.+++++|+ +++++.+++ ..+++++..|+.+ +++ .+|+|+++ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 6689999998 999988776 3589999999988 433 49999994 55988
Q ss_pred CCccccccCHHHHHHhHh
Q 046375 235 WSDEACERTELEWKNIPE 252 (276)
Q Consensus 235 ~~~~~~~rt~~e~~~ll~ 252 (276)
+++++.++-.+++.++++
T Consensus 81 ~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLR 98 (101)
T ss_dssp SSHHHHHHHHHHHHHTEE
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 887766554455544443
No 45
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.98 E-value=5.2e-10 Score=81.32 Aligned_cols=84 Identities=24% Similarity=0.363 Sum_probs=68.6
Q ss_pred EEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCCC--ccEEEEcccccCCCccccc
Q 046375 169 VDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIPN--ADALLLKWVLHNWSDEACE 241 (276)
Q Consensus 169 lDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~~~~~ 241 (276)
||||||+|..+..++++ +..+++++|. +.+++.+++ ..+++++.+|+.+ |+|+ +|+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8999999998 888887776 5667899999988 7773 9999999999999 4445
Q ss_pred cCHHHHHHhHhhCC
Q 046375 242 RTELEWKNIPEKGG 255 (276)
Q Consensus 242 rt~~e~~~ll~~aG 255 (276)
+...|+.++|+.-|
T Consensus 78 ~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 78 AALREIYRVLKPGG 91 (95)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHHHcCcCe
Confidence 56667777766655
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.98 E-value=8.4e-09 Score=89.33 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADA 225 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~ 225 (276)
+..+++.+. .....+|||+|||+|.++..+.+. ..+++++|+ |.+++.+++ ...+.++.+|+.+ |++ .+|+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 455566665 445789999999999999988774 578999999 999988876 3446788999977 665 3999
Q ss_pred EEEcccccCCCcccc
Q 046375 226 LLLKWVLHNWSDEAC 240 (276)
Q Consensus 226 i~l~~vlh~~~~~~~ 240 (276)
|+++.++|..++...
T Consensus 107 V~s~~~l~~~~d~~~ 121 (251)
T PRK10258 107 AWSNLAVQWCGNLST 121 (251)
T ss_pred EEECchhhhcCCHHH
Confidence 999999987665443
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.96 E-value=1.3e-10 Score=85.96 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=45.0
Q ss_pred EEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CC---CeEEEEccCCCC-CC-CccEEEEcccccCCC
Q 046375 169 VDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YD---GVTHVSGDMFHT-IP-NADALLLKWVLHNWS 236 (276)
Q Consensus 169 lDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~---ri~~~~~d~~~~-~p-~~D~i~l~~vlh~~~ 236 (276)
||||||+|.++..+++++|..+++++|. |.+++.+++ .. ++++...|.++. .+ .||+|++++++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988876 22 344444454443 33 599999999999993
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.93 E-value=4.3e-09 Score=86.79 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=78.1
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC-CccEEEEcccccCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP-NADALLLKWVLHNW 235 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p-~~D~i~l~~vlh~~ 235 (276)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .+|+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 68999999999999999999999999999998 777766553 3579999999977 322 599998765 6665
Q ss_pred Ccccc-----------------ccCHHHHHHhHhh---CCCCceEEEecCC
Q 046375 236 SDEAC-----------------ERTELEWKNIPEK---GGSPRYRIIKIPA 266 (276)
Q Consensus 236 ~~~~~-----------------~rt~~e~~~ll~~---aGf~~~~~~~~~~ 266 (276)
++--. .....++..+.+. .||+.+++.+..+
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 44111 2467777777777 7999888877644
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.91 E-value=3.6e-09 Score=88.31 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=74.9
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC-Cc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP-NA 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p-~~ 223 (276)
..+++.+. ...+.+|||||||+|.++..++++ +.+++++|. |.+++.+++ .-++++...|+.. +++ .+
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555555 445689999999999999999986 568999999 888887654 2247777888765 444 49
Q ss_pred cEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 224 DALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
|+|+++.++|++++++......++.++|..-|.
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 999999999998776654455555555665553
No 50
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=92.74 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCCCCCC
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMFHTIP 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~~~p 221 (276)
.-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++..|.++.++
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33346999999999999999999999999999998 777777654 1378999999988553
Q ss_pred --CccEEEEccccc---CCCccccc--------------------cCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 222 --NADALLLKWVLH---NWSDEACE--------------------RTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 222 --~~D~i~l~~vlh---~~~~~~~~--------------------rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
.||+|+++--+| .+++..+. ....+|...|++ -|..+++.....-+.|+.+.|
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~-~fg~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKK-IFGNCTTIATNNKFVVLKAVK 373 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHH-HcCCceEEccCCCEEEEEEEe
Confidence 499999974444 34443331 123456666666 366666665556678887766
No 51
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.86 E-value=2.2e-08 Score=86.43 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=78.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEEccc---
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLLKWV--- 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l~~v--- 231 (276)
...+|+|+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|++++++ .+|+|+++--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456899999999999999999999999999998 888877764 3479999999988664 3999987422
Q ss_pred ---ccCCCccc-------------------------c---------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 232 ---LHNWSDEA-------------------------C---------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 232 ---lh~~~~~~-------------------------~---------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+|.+..+. + ....+++.++|+++||+.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEeC
Confidence 22222110 0 135778999999999998887655
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=8.3e-09 Score=97.56 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=84.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC---CCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH---TIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~---~~p- 221 (276)
.+.+++.++ .....+|||||||+|.++..+++.+. +++++|. |.+++.++. .++++++.+|+.+ ++|
T Consensus 26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 355566665 44567999999999999999999854 7899998 888876643 4679999999964 455
Q ss_pred -CccEEEEcccccCCCcccc--------------------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 222 -NADALLLKWVLHNWSDEAC--------------------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~--------------------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
.+|+|++..++|++++++. -|+..+|.+++.++||....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 3999999999999987542 13688999999999988753
No 53
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.85 E-value=1.1e-08 Score=83.78 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=80.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC---CCCC--ccEEEEcccccCCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH---TIPN--ADALLLKWVLHNWS 236 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~---~~p~--~D~i~l~~vlh~~~ 236 (276)
+...+|||+|||.|.++..|.+. .++++.++|+ ++-+..+. +..++++++|+.+ .+|+ ||.|+++++|....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 35799999999999999888885 6999999998 44333222 3457889999987 3673 99999999998877
Q ss_pred cccc---------------------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 237 DEAC---------------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 237 ~~~~---------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
..+. .-|..+++.+.++.|+++.+.....
T Consensus 90 ~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 90 RPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred HHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 6554 1289999999999999999887663
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.83 E-value=5.1e-08 Score=80.72 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC-CccEEEEccccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP-NADALLLKWVLH 233 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p-~~D~i~l~~vlh 233 (276)
+...+|||||||+|.++..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.+ .+|+|+++.+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999998 888877765 3459999999977 333 4999998653 2
Q ss_pred CCCc--ccc---------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 234 NWSD--EAC---------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 234 ~~~~--~~~---------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++.+ +.+ .....++..+.+..|+.+.+++..
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE
Confidence 2211 011 235778888888889998776543
No 55
>PRK04266 fibrillarin; Provisional
Probab=98.83 E-value=5.7e-08 Score=82.83 Aligned_cols=109 Identities=8% Similarity=0.101 Sum_probs=79.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhC----CCCCCeEEEEccCCCC-----CC-CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTA----PVYDGVTHVSGDMFHT-----IP-NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a----~~~~ri~~~~~d~~~~-----~p-~~D~i~l~~ 230 (276)
.....+|+|+|||+|.++..+++..+..+++++|. |.+++.+ +...+|.++.+|..+| ++ .+|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 66778999999999999999999998778999998 7766633 3346799999998753 23 3899874
Q ss_pred cccCCCccc--------c-------------------------ccCHHHHHHhHhhCCCCceEEEecCCc---cEEEEEe
Q 046375 231 VLHNWSDEA--------C-------------------------ERTELEWKNIPEKGGSPRYRIIKIPAL---QCIIESY 274 (276)
Q Consensus 231 vlh~~~~~~--------~-------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~a~ 274 (276)
+.++.. + .+..++..++++++||+.++....... +..+.++
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 332211 1 012334569999999999999887543 6666665
Q ss_pred c
Q 046375 275 P 275 (276)
Q Consensus 275 ~ 275 (276)
+
T Consensus 225 ~ 225 (226)
T PRK04266 225 K 225 (226)
T ss_pred c
Confidence 4
No 56
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.83 E-value=3.2e-08 Score=88.15 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=60.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC--CCC------ccEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT--IPN------ADAL 226 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~--~p~------~D~i 226 (276)
...+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ .-+|.++.+|+.+. ++. ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999988 688999999 888876654 23577789999873 332 2356
Q ss_pred EEcccccCCCcccc
Q 046375 227 LLKWVLHNWSDEAC 240 (276)
Q Consensus 227 ~l~~vlh~~~~~~~ 240 (276)
++...+|+++++++
T Consensus 143 ~~gs~~~~~~~~e~ 156 (301)
T TIGR03438 143 FPGSTIGNFTPEEA 156 (301)
T ss_pred EecccccCCCHHHH
Confidence 67788999988775
No 57
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=9.2e-08 Score=83.81 Aligned_cols=68 Identities=21% Similarity=0.391 Sum_probs=58.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
..+..+|+|+|||+|.++..+++..|+.+++++|. +.+++.+++ ..+++++.+|++++++ .+|+|+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 34567999999999999999999999999999998 788776654 3589999999988765 49999874
No 58
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.78 E-value=5.1e-09 Score=67.37 Aligned_cols=49 Identities=55% Similarity=0.898 Sum_probs=41.2
Q ss_pred hHhHHHHHcChhhhhhhCC-CCCCHHHHHhhcC-CCCCCCcchHHHHHHHHh
Q 046375 2 LALKCAIELRIPDIIHSHG-GPITSSQIASSID-SPSSPEISYIERIMRLLG 51 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~-~~~~~~~~~l~~lL~~L~ 51 (276)
++|++|++|||||.|..+| +++|++||+.++. .+|. +...+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~-~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPS-APPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TT-HHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcc-hHHHHHHHHHHhC
Confidence 6899999999999999875 7999999999999 6552 4568999999985
No 59
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.78 E-value=4.1e-08 Score=83.92 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=88.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC--CccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP--NADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p--~~D~i~l 228 (276)
.+...+|+|+|||+|..+..++++.++++++++|+ +.+.+.|++ .+||+++..|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 45689999999999999999999999999999999 777777765 7899999999977 232 4899998
Q ss_pred cccccCCCcccc--------------------------------------ccCHHHHHHhHhhCCCCceEEEec---CC-
Q 046375 229 KWVLHNWSDEAC--------------------------------------ERTELEWKNIPEKGGSPRYRIIKI---PA- 266 (276)
Q Consensus 229 ~~vlh~~~~~~~--------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~---~~- 266 (276)
+==.+.-++..+ .-...|+..++.+.+|...++... .+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k 201 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIGK 201 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecCCCCC
Confidence 654444443322 014788899999999998776444 22
Q ss_pred --ccEEEEEec
Q 046375 267 --LQCIIESYP 275 (276)
Q Consensus 267 --~~~vi~a~~ 275 (276)
.+.+|+++|
T Consensus 202 ~A~~vLv~~~k 212 (248)
T COG4123 202 AANRVLVEAIK 212 (248)
T ss_pred cceEEEEEEec
Confidence 578888876
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.77 E-value=1e-07 Score=84.23 Aligned_cols=64 Identities=17% Similarity=0.411 Sum_probs=56.6
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
.+|+|+|||+|.++..++..+|+.+++++|. +.+++.+++ .+|++++.+|++++++ .+|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 6899999999999999999999999999998 888877765 3579999999998765 49999874
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.76 E-value=5.7e-08 Score=85.15 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p- 221 (276)
...+++.++ +.+..+|||||||-|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+ ++
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~ 126 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG 126 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence 456778887 8889999999999999999999999 899999998 555554432 5799999999877 33
Q ss_pred CccEEEEcccccCCCcccc-------------------------------------------------ccCHHHHHHhHh
Q 046375 222 NADALLLKWVLHNWSDEAC-------------------------------------------------ERTELEWKNIPE 252 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~-------------------------------------------------~rt~~e~~~ll~ 252 (276)
.||.|+.--++.+...+.- .++.+++...++
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~ 206 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE 206 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh
Confidence 6999999888888876543 147889988999
Q ss_pred hCCCCceEEEecC
Q 046375 253 KGGSPRYRIIKIP 265 (276)
Q Consensus 253 ~aGf~~~~~~~~~ 265 (276)
++||++..+...+
T Consensus 207 ~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 207 DAGLEVEDVENLG 219 (273)
T ss_dssp HTT-EEEEEEE-H
T ss_pred cCCEEEEEEEEcC
Confidence 9999998887653
No 62
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.75 E-value=1.3e-07 Score=86.66 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC-CC---CccEEEEccccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT-IP---NADALLLKWVLH 233 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~-~p---~~D~i~l~~vlh 233 (276)
...+|+|+|||+|.++..+++++|+.+++++|. |.+++.+++ ..+++++.+|++++ +| .+|+|+++-=..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456899999999999999999999999999999 999988765 45899999999873 33 399999843110
Q ss_pred CCCc------------ccc---------------------------------ccCHHHHHHhHhhCCCCceEEEec-CCc
Q 046375 234 NWSD------------EAC---------------------------------ERTELEWKNIPEKGGSPRYRIIKI-PAL 267 (276)
Q Consensus 234 ~~~~------------~~~---------------------------------~rt~~e~~~ll~~aGf~~~~~~~~-~~~ 267 (276)
.-.+ ..+ ....+++.+++++.||..+++.+. .|.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 0000 001 124778899999999998777554 443
Q ss_pred cEEEEEe
Q 046375 268 QCIIESY 274 (276)
Q Consensus 268 ~~vi~a~ 274 (276)
.-++.++
T Consensus 411 dR~v~~~ 417 (423)
T PRK14966 411 DRVTLGK 417 (423)
T ss_pred cEEEEEE
Confidence 3344443
No 63
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.75 E-value=2e-08 Score=88.88 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=65.2
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC-Ccc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP-NAD 224 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p-~~D 224 (276)
.++..++ ..++.+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++..+|+.. +++ .+|
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 3444444 344579999999999999999985 578999999 888877654 2368888889876 355 499
Q ss_pred EEEEcccccCCCcccc
Q 046375 225 ALLLKWVLHNWSDEAC 240 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~ 240 (276)
+|++..++|..++++.
T Consensus 187 ~I~~~~vl~~l~~~~~ 202 (287)
T PRK12335 187 FILSTVVLMFLNRERI 202 (287)
T ss_pred EEEEcchhhhCCHHHH
Confidence 9999999998876554
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.73 E-value=6.7e-08 Score=84.39 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=77.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhh---CCC----CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITT---APV----YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~---a~~----~~ri~~~~~d~~~-~~p 221 (276)
.+.+...+. --..++|+|||||+|+++.+++++.|. .++++|- +-..-+ +++ ..++...+..+.+ |..
T Consensus 104 W~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~ 180 (315)
T PF08003_consen 104 WDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNL 180 (315)
T ss_pred HHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcccc
Confidence 344455553 235689999999999999999999775 5899996 222211 111 3344444433333 322
Q ss_pred -CccEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCC
Q 046375 222 -NADALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf 256 (276)
.||+|++.-||++..+.-- .+|...+..||+.+||
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF 260 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF 260 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence 4999999999988765432 1489999999999999
Q ss_pred CceEEEec
Q 046375 257 PRYRIIKI 264 (276)
Q Consensus 257 ~~~~~~~~ 264 (276)
+.+++...
T Consensus 261 ~~v~~v~~ 268 (315)
T PF08003_consen 261 KDVRCVDV 268 (315)
T ss_pred ceEEEecC
Confidence 99998755
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=5.6e-08 Score=84.58 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=91.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p~ 222 (276)
.+.+++.+. +.+..+|||||||-|.+++.++++| +.+++++++ ++..+.+++ .++|++.-.|..+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 467788888 9999999999999999999999999 999999999 666665544 56899999888773333
Q ss_pred ccEEEEcccccCCCcccc---------------------------------------------ccCHHHHHHhHhhCCCC
Q 046375 223 ADALLLKWVLHNWSDEAC---------------------------------------------ERTELEWKNIPEKGGSP 257 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~---------------------------------------------~rt~~e~~~ll~~aGf~ 257 (276)
||-|+.--+++++..+.- .++..++.+..+++||+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcE
Confidence 999998888888877443 24788888889999999
Q ss_pred ceEEEecC
Q 046375 258 RYRIIKIP 265 (276)
Q Consensus 258 ~~~~~~~~ 265 (276)
+......+
T Consensus 218 v~~~~~~~ 225 (283)
T COG2230 218 VLDVESLR 225 (283)
T ss_pred EehHhhhc
Confidence 88776553
No 66
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2e-07 Score=82.08 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=80.6
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCCC-ccEEEE--cccccC--
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIPN-ADALLL--KWVLHN-- 234 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p~-~D~i~l--~~vlh~-- 234 (276)
+|+|||||+|..++.++++.|++++++.|+ |..++.|++ ..|+.++.+|+|+++++ ||+|++ +++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 999988865 26677788899998875 999987 344333
Q ss_pred -CCcccc----------------------------------------ccCHHHHHHhHhhCC-CCceEEEec-CCccEEE
Q 046375 235 -WSDEAC----------------------------------------ERTELEWKNIPEKGG-SPRYRIIKI-PALQCII 271 (276)
Q Consensus 235 -~~~~~~----------------------------------------~rt~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi 271 (276)
..++.. ....++..+++.+.| |..+.+++. .+...++
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~ 272 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVV 272 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEE
Confidence 111111 125778899999999 666666555 4444444
Q ss_pred EEe
Q 046375 272 ESY 274 (276)
Q Consensus 272 ~a~ 274 (276)
.+.
T Consensus 273 ~~~ 275 (280)
T COG2890 273 LAK 275 (280)
T ss_pred EEE
Confidence 443
No 67
>PHA03411 putative methyltransferase; Provisional
Probab=98.70 E-value=7.4e-08 Score=83.59 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=76.6
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCC-C-CccEEEEcccccCCCcccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTI-P-NADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~-p-~~D~i~l~~vlh~~~~~~~ 240 (276)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+++.. + .+|+|+++--++..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999988889999999 999988876 568999999999832 3 4999999666555443322
Q ss_pred -----------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 241 -----------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 241 -----------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
--+.+||+++|+++||..
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 016999999999999975
No 68
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.69 E-value=1.3e-08 Score=86.60 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=79.3
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------CC----CeEEEEccCCCCCCCccEEEEccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------YD----GVTHVSGDMFHTIPNADALLLKWV 231 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~----ri~~~~~d~~~~~p~~D~i~l~~v 231 (276)
..+|||||||.|.++..|++.. ..++++|. +.+++.|++ .. |+++...|.....+.||+|+++.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3779999999999999999985 77899998 888888875 22 577777777664455999999999
Q ss_pred ccCCCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 232 LHNWSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 232 lh~~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|+..|.+- --+++|...+++.+|+++..+
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 999976553 027999999999999998776
Q ss_pred Ee
Q 046375 262 IK 263 (276)
Q Consensus 262 ~~ 263 (276)
..
T Consensus 248 ~G 249 (282)
T KOG1270|consen 248 VG 249 (282)
T ss_pred hc
Confidence 43
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.69 E-value=2.1e-07 Score=84.12 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCCC-ccEE
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIPN-ADAL 226 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p~-~D~i 226 (276)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ .-..+++..|.+++.++ +|+|
T Consensus 188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 345444 23345899999999999999999999999999999 788877765 22456788888876554 9999
Q ss_pred EEcccccCCC
Q 046375 227 LLKWVLHNWS 236 (276)
Q Consensus 227 ~l~~vlh~~~ 236 (276)
+++--+|+.-
T Consensus 266 vsNPPFH~g~ 275 (342)
T PRK09489 266 ISNPPFHDGI 275 (342)
T ss_pred EECCCccCCc
Confidence 9999898743
No 70
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.68 E-value=2.4e-08 Score=84.29 Aligned_cols=98 Identities=14% Similarity=-0.008 Sum_probs=76.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCC--eEEEEccCCC-CC--CCccEEEEcccccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDG--VTHVSGDMFH-TI--PNADALLLKWVLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~r--i~~~~~d~~~-~~--p~~D~i~l~~vlh~ 234 (276)
...+|||||||-|.++..+++.. .+++++|+ +..++.++. ... |.+.+....+ .. ..||+|++..||++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46899999999999999999985 89999998 888888875 222 3344444433 12 34999999999999
Q ss_pred CCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 235 WSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 235 ~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
.++++. ...++|...++..+|+.......
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g 215 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKG 215 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecc
Confidence 999884 02589999999999998877643
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.67 E-value=3.6e-08 Score=80.99 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCCCCC--CccEEEEcccccC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFHTIP--NADALLLKWVLHN 234 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~ 234 (276)
-.+..+++|+|||.|.++..|+.+.- +.+++|. |..++.+++ .++|+++..|+-+..| .||+|+++-|+|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 45678999999999999999999973 6799999 888888875 6799999999988655 3999999999999
Q ss_pred CCcc
Q 046375 235 WSDE 238 (276)
Q Consensus 235 ~~~~ 238 (276)
+++.
T Consensus 119 L~~~ 122 (201)
T PF05401_consen 119 LDDA 122 (201)
T ss_dssp SSSH
T ss_pred CCCH
Confidence 9873
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.66 E-value=1.7e-07 Score=80.25 Aligned_cols=99 Identities=17% Similarity=0.033 Sum_probs=76.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-C--CC-CccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-T--IP-NADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~--~p-~~D~i~l~~vl 232 (276)
.+..+|||||||.|.++..+++. ..+++++|. +.++..+++ ..+++++..|+.+ + .+ .+|+|++++++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999999886 467999998 777766654 3467888887765 2 22 39999999999
Q ss_pred cCCCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 233 HNWSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 233 h~~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
++.++... ..+.++|.++|+++||+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 98876432 0156789999999999988775
Q ss_pred e
Q 046375 263 K 263 (276)
Q Consensus 263 ~ 263 (276)
.
T Consensus 205 ~ 205 (233)
T PRK05134 205 G 205 (233)
T ss_pred e
Confidence 3
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.65 E-value=1.3e-07 Score=72.31 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCC-C
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIP-N 222 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p-~ 222 (276)
++..++ .....+++|+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|... ..+ .
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344454 55567999999999999999999999999999998 888877654 4579999998764 223 5
Q ss_pred ccEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 223 ADALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
+|+|++....+.+ .....+..++|..-|.
T Consensus 89 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 89 PDRVFIGGSGGLL-----QEILEAIWRRLRPGGR 117 (124)
T ss_pred CCEEEECCcchhH-----HHHHHHHHHHcCCCCE
Confidence 9999987644321 2345556666665553
No 74
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.64 E-value=2.1e-07 Score=88.43 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=57.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l 228 (276)
...+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .++++++.+|++++++ .+|+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence 346899999999999999999999999999999 888887765 3689999999988654 4999997
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.63 E-value=1.4e-07 Score=79.27 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=73.0
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP-- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p-- 221 (276)
.+++.++ .....+|||||||+|.++..+++..+ ..+++++|. |.+++.+++ .++++++.+|..+.++
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445554 45668999999999999999998875 568999998 888877664 2469999999987433
Q ss_pred -CccEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 222 -NADALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
.||+|++...++..+ .++.+.|..-|.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~ 168 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKDGGV 168 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCcCcE
Confidence 499999998887654 467788887773
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=98.63 E-value=4.9e-07 Score=74.39 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCC-eEEEEccCCCCCC--CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDG-VTHVSGDMFHTIP--NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~r-i~~~~~d~~~~~p--~~D~i~l~~v 231 (276)
.+..++||+|||+|.++..++++ +.+++++|+ |.+++.+++ .++ +.++.+|+.++++ .+|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999998 678999999 888877654 223 8999999988655 3999997654
Q ss_pred ccCCCc--------------------------ccc----------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 232 LHNWSD--------------------------EAC----------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 232 lh~~~~--------------------------~~~----------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++...+ +++ ....+++.++++++||++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 322110 000 124788999999999998776443
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.62 E-value=5.4e-08 Score=79.40 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=59.6
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEEcccccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLLKWVLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~ 234 (276)
...++||+|||+|.++..+++++|+.+++++|. |.+++.+++ .+.++++..|.+++++ .+|+|+++==+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 578999999999999999999999999999998 888877765 2339999999999766 4999998755554
Q ss_pred CC
Q 046375 235 WS 236 (276)
Q Consensus 235 ~~ 236 (276)
-.
T Consensus 111 ~~ 112 (170)
T PF05175_consen 111 GG 112 (170)
T ss_dssp TS
T ss_pred cc
Confidence 44
No 78
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.59 E-value=1.2e-07 Score=83.66 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=58.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
+..+|+|+|||+|.++..+++++|+.+++++|. +.+++.+++ .++|+++.+|+++++| .+|+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 457899999999999999999999999999999 888887765 3689999999988765 39999974
No 79
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.58 E-value=2.4e-07 Score=76.97 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=81.4
Q ss_pred CCCc-eEEEeeCCccHHHHHHHHHCCCCeEEEeechHHH-hhCC----C--CCCe-EEEEccCCCC---CC--------C
Q 046375 163 DSLK-SLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVI-TTAP----V--YDGV-THVSGDMFHT---IP--------N 222 (276)
Q Consensus 163 ~~~~-~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~-~~a~----~--~~ri-~~~~~d~~~~---~p--------~ 222 (276)
+... +||+||+|+|..+..+++.+|+++..--|...-. ..++ + .+++ .-+..|+.++ ++ .
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 5999999999999999999999988777873222 2221 1 1111 1233455442 22 3
Q ss_pred ccEEEEcccccCCCcccc-------------------------------------------------ccCHHHHHHhHhh
Q 046375 223 ADALLLKWVLHNWSDEAC-------------------------------------------------ERTELEWKNIPEK 253 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~-------------------------------------------------~rt~~e~~~ll~~ 253 (276)
+|+|++.|++|-.+-+.+ -|+.+++.++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 899999999999887766 2689999999999
Q ss_pred CCCCceEEEecCCccEEEEEe
Q 046375 254 GGSPRYRIIKIPALQCIIESY 274 (276)
Q Consensus 254 aGf~~~~~~~~~~~~~vi~a~ 274 (276)
+||+.++++.+|...-+++-+
T Consensus 183 ~GL~l~~~~~MPANN~~Lvfr 203 (204)
T PF06080_consen 183 HGLELEEDIDMPANNLLLVFR 203 (204)
T ss_pred CCCccCcccccCCCCeEEEEe
Confidence 999999999998765555444
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.57 E-value=2.1e-07 Score=79.02 Aligned_cols=98 Identities=15% Similarity=0.005 Sum_probs=76.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----C-CCeEEEEccCCC-C--CC-CccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----Y-DGVTHVSGDMFH-T--IP-NADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~-~ri~~~~~d~~~-~--~p-~~D~i~l~~vl 232 (276)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ . .++++...|+.+ + .+ .+|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 468999999999999999988654 5899998 777776654 2 268888888865 2 22 49999999999
Q ss_pred cCCCcccc--------------------------------------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 233 HNWSDEAC--------------------------------------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 233 h~~~~~~~--------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
|+..+.+. ..+..+|.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 98766443 0145789999999999998875
Q ss_pred e
Q 046375 263 K 263 (276)
Q Consensus 263 ~ 263 (276)
.
T Consensus 203 ~ 203 (224)
T TIGR01983 203 G 203 (224)
T ss_pred e
Confidence 3
No 81
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.56 E-value=2.1e-07 Score=78.14 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=57.6
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccC-CC-C--CC--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDM-FH-T--IP--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~-~~-~--~p--~~D~i~l~~ 230 (276)
...+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887764 36899999999 33 3 54 399998865
Q ss_pred cc
Q 046375 231 VL 232 (276)
Q Consensus 231 vl 232 (276)
..
T Consensus 120 ~~ 121 (202)
T PRK00121 120 PD 121 (202)
T ss_pred CC
Confidence 43
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=3.4e-07 Score=77.38 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-- 221 (276)
..++..++ .....+|||||||+|+++..+++.. ++.+++.+|. |.+++.+++ .++|+++.+|..+.++
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34555566 6678999999999999999999885 4578999998 888887765 3579999999987332
Q ss_pred -CccEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 222 -NADALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
.||+|++....+.. ...|.+.|+.-|-
T Consensus 144 ~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~ 171 (212)
T PRK13942 144 APYDRIYVTAAGPDI--------PKPLIEQLKDGGI 171 (212)
T ss_pred CCcCEEEECCCcccc--------hHHHHHhhCCCcE
Confidence 49999998766544 3467777887773
No 83
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.54 E-value=3.9e-07 Score=73.58 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC--CCC-ccEEEEcccccC
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT--IPN-ADALLLKWVLHN 234 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~--~p~-~D~i~l~~vlh~ 234 (276)
.+|||+|||.|+++..|++.--.-..+++|. +..++.|+. .+.|+|.+.|+++| .++ +|+|+=.-.+..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 4999999999999999999875556799998 766665543 45599999999996 344 898875444332
Q ss_pred CC--cccc--------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 235 WS--DEAC--------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 235 ~~--~~~~--------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
.+ ++.. ..|.+|+.+.++.-||.....+|.+
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEeeccc
Confidence 11 1111 2599999999999999988877764
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.54 E-value=3.5e-07 Score=77.44 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=73.0
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-- 221 (276)
..+++.++ .....+|||||||+|.++..+++..+ +.+++++|. |++++.+++ .++++++.+|..+..+
T Consensus 67 ~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34455555 66788999999999999999999865 567999998 888887765 3679999999987322
Q ss_pred -CccEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 222 -NADALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
.||+|++....+.. .+.+.++|..-|.
T Consensus 145 ~~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~ 172 (215)
T TIGR00080 145 APYDRIYVTAAGPKI--------PEALIDQLKEGGI 172 (215)
T ss_pred CCCCEEEEcCCcccc--------cHHHHHhcCcCcE
Confidence 49999987665443 3457777877774
No 85
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.54 E-value=1.6e-07 Score=83.83 Aligned_cols=64 Identities=22% Similarity=0.452 Sum_probs=56.9
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
.+|||+|||+|.++..+++++|+.+++++|+ |.+++.+++ .+||+++.+|+++++| .+|+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 6899999999999999999999999999999 888887765 3589999999988665 39999975
No 86
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.53 E-value=7e-07 Score=77.41 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC------CCCccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPH--IKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT------IPNADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~--l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~------~p~~D~i 226 (276)
.++.+||||.||+|.+....++.+|. .++.+.|. |..++..++ .+-++|..+|.|+. -|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46889999999999999999999998 77899998 776665544 45569999999983 3457999
Q ss_pred EEcccccCCCcccc------------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 227 LLKWVLHNWSDEAC------------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 227 ~l~~vlh~~~~~~~------------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
+.+-+...++|.+. .||..|+.+|.+.|||+-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 99999988998663 279999999999999995
Q ss_pred eE-EEecCCccEEEEEec
Q 046375 259 YR-IIKIPALQCIIESYP 275 (276)
Q Consensus 259 ~~-~~~~~~~~~vi~a~~ 275 (276)
.. .++--|-.+|-.|++
T Consensus 294 ~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 294 IDQRIDEWGIFTVSLARR 311 (311)
T ss_pred hhheeccCCceEEEeecC
Confidence 44 344456677776654
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.53 E-value=3.7e-07 Score=83.85 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=82.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCCCCCCccEEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFHTIPNADALL 227 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~~~p~~D~i~ 227 (276)
..+++.++ .....+|||||||.|.++..+++.+ +.+++++|+ |++++.+++ .-.+++...|+.+.-..+|+|+
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 44556665 6677899999999999999999876 679999998 888887765 2357888888765222499999
Q ss_pred EcccccCCCccccccCHHHHHHhHhhCCCCceEE
Q 046375 228 LKWVLHNWSDEACERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 228 l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+..++|+.+++..+.-.+++.++|..-|.-+...
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999988876655566778888898888655543
No 88
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.50 E-value=5.7e-07 Score=76.03 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=67.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC------------------CCCCeEEEEccCCC-C---
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP------------------VYDGVTHVSGDMFH-T--- 219 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~d~~~-~--- 219 (276)
+...++||+|||.|..+..|+++ +..++++|+ |..++.+. +..+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 778999999 77777531 13579999999998 3
Q ss_pred CCCccEEEEcccccCCCccccccCHHHHHHhHhh
Q 046375 220 IPNADALLLKWVLHNWSDEACERTELEWKNIPEK 253 (276)
Q Consensus 220 ~p~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~ 253 (276)
.+.+|+|+-+-++|..+++...+-...+.++|..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP 144 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC
Confidence 2349999999999999887763333333333333
No 89
>PTZ00146 fibrillarin; Provisional
Probab=98.49 E-value=2e-06 Score=75.43 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=79.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hH----HHhhCCCCCCeEEEEccCCCC------CCCccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PH----VITTAPVYDGVTHVSGDMFHT------IPNADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~----~~~~a~~~~ri~~~~~d~~~~------~p~~D~i~l~ 229 (276)
+....+|||+|||+|.++..++... |.-+++.+|. |. +++.++...+|.++.+|+..| .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5567899999999999999999987 4568999998 44 555555567899999998764 2348999887
Q ss_pred ccccCCCccc-c--------------------------ccCHHHH----HHhHhhCCCCceEEEecCC---ccEEEEEe
Q 046375 230 WVLHNWSDEA-C--------------------------ERTELEW----KNIPEKGGSPRYRIIKIPA---LQCIIESY 274 (276)
Q Consensus 230 ~vlh~~~~~~-~--------------------------~rt~~e~----~~ll~~aGf~~~~~~~~~~---~~~vi~a~ 274 (276)
... ++.. . -..+++. .++|+++||+.++...++. .+++|.++
T Consensus 210 va~---pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 210 VAQ---PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred CCC---cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEE
Confidence 642 2211 1 0133443 4889999999999888754 35666653
No 90
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.48 E-value=5.7e-07 Score=78.93 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=57.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCC---eEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHI---KGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l---~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
...+|||||||+|.++..+++.+|.. .++++|+ +.++..+++ ..++++..+|..+ |++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 45789999999999999999998854 6899999 889888866 5779999999987 766 3999987543
No 91
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.48 E-value=3.4e-07 Score=75.77 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=62.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-A 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~ 223 (276)
+.++..++ ..++.++||+|||.|..+.-|+++ +..++.+|. +..++.+++ .-.|+....|+.+ ++++ +
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 44566665 556889999999999999999998 778999998 666655443 3348999999987 5664 9
Q ss_pred cEEEEcccccCCCcccc
Q 046375 224 DALLLKWVLHNWSDEAC 240 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~ 240 (276)
|+|++..|+|+.+.+..
T Consensus 96 D~I~st~v~~fL~~~~~ 112 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELR 112 (192)
T ss_dssp EEEEEESSGGGS-GGGH
T ss_pred CEEEEEEEeccCCHHHH
Confidence 99999999999887765
No 92
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.48 E-value=1.4e-06 Score=75.54 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=55.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCCCCC-----CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFHTIP-----NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~~~p-----~~D~i~l~ 229 (276)
...++||+|||+|.++..+++..|..+++++|. |.+++.+++ ..+++++.+|+++.++ .+|+|+++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEEC
Confidence 346899999999999999999999999999999 899988776 2346889999987432 49998864
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.47 E-value=6e-07 Score=77.82 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=70.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCCCccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIPNADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p~~D~i~l~~vlh~ 234 (276)
....+|+|||||+|.++..+++..+. +++++|. |.+++.+++ .+++.+..+|. .||+|+++...+.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcHHH
Confidence 45789999999999999988776543 6999999 888887765 13344333321 5899987543221
Q ss_pred CCc--ccc----------------ccCHHHHHHhHhhCCCCceEEEecCCccEEE
Q 046375 235 WSD--EAC----------------ERTELEWKNIPEKGGSPRYRIIKIPALQCII 271 (276)
Q Consensus 235 ~~~--~~~----------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi 271 (276)
... .+. ....+++.+.+++.||++.++...++-.+++
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 110 011 2357788999999999999888766544443
No 94
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.46 E-value=6.5e-07 Score=72.99 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=78.7
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCCCcc
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIPNAD 224 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p~~D 224 (276)
+..+. ..+..+++|||||+|..++..+..+|..+++.+|. ++.++..++ .++++++.||.-+ +.|.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34444 66788999999999999999999999999999998 777776655 6899999999866 355699
Q ss_pred EEEEcccccCCCc--ccc----------------ccCHHHHHHhHhhCCC-CceEE
Q 046375 225 ALLLKWVLHNWSD--EAC----------------ERTELEWKNIPEKGGS-PRYRI 261 (276)
Q Consensus 225 ~i~l~~vlh~~~~--~~~----------------~rt~~e~~~ll~~aGf-~~~~~ 261 (276)
.|++.--- ..+. +-+ .-+.....+++++.|+ +++++
T Consensus 105 aiFIGGg~-~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 105 AIFIGGGG-NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EEEECCCC-CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEE
Confidence 99986541 1110 111 2366777888999999 56555
No 95
>PRK04457 spermidine synthase; Provisional
Probab=98.45 E-value=3e-07 Score=80.21 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC-CccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP-NADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p-~~D~i~l~ 229 (276)
+++++|||||||.|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .+|+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999999999999999999999 999988765 3789999999865 344 49999874
No 96
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.45 E-value=6.6e-07 Score=72.86 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=61.3
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC--c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN--A 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~--~ 223 (276)
..+++.++ .....++||||||.|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ ++++ +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 44566666 667789999999999999999998 568999998 778877655 4689999999988 5553 7
Q ss_pred cEEEEcccccCC
Q 046375 224 DALLLKWVLHNW 235 (276)
Q Consensus 224 D~i~l~~vlh~~ 235 (276)
|.|+. +..++.
T Consensus 79 d~vi~-n~Py~~ 89 (169)
T smart00650 79 YKVVG-NLPYNI 89 (169)
T ss_pred CEEEE-CCCccc
Confidence 87765 444433
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.6e-06 Score=74.60 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=88.1
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCCC-c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIPN-A 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p~-~ 223 (276)
+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ...++.+++ -++..+...|.+++.++ |
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45677776 44445999999999999999999999999999998 667777766 23335677888888775 9
Q ss_pred cEEEEcccccCCCcccc-----------------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 224 DALLLKWVLHNWSDEAC-----------------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~-----------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
|.|+++==+|.=-+..- -...--|...|++. |..+++....+.+-|+.++|
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~-Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKEL-FGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHh-cCCEEEEEeCCCEEEEEEec
Confidence 99999877774222111 02344456666665 67777777777788888776
No 98
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.41 E-value=9.1e-07 Score=77.07 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCCcc
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPNAD 224 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~~D 224 (276)
...+++.++ .....+|||||||.|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ ++|.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 445566655 5667899999999999999999984 57899998 778877655 4689999999998 677788
Q ss_pred EEEEcccccCCC
Q 046375 225 ALLLKWVLHNWS 236 (276)
Q Consensus 225 ~i~l~~vlh~~~ 236 (276)
.|+. |.-++.+
T Consensus 94 ~Vv~-NlPy~i~ 104 (258)
T PRK14896 94 KVVS-NLPYQIS 104 (258)
T ss_pred EEEE-cCCcccC
Confidence 7665 4444443
No 99
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.41 E-value=5.5e-07 Score=75.04 Aligned_cols=68 Identities=13% Similarity=0.313 Sum_probs=55.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C---CC--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T---IP--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~---~p--~~D~i~l~~ 230 (276)
...++||||||+|.++..+++++|+.+++++|. +.+++.+++ .++|+++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999998 878877654 3589999999975 1 44 388887664
Q ss_pred c
Q 046375 231 V 231 (276)
Q Consensus 231 v 231 (276)
-
T Consensus 96 p 96 (194)
T TIGR00091 96 P 96 (194)
T ss_pred C
Confidence 3
No 100
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.37 E-value=9.7e-07 Score=77.50 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=59.1
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCCCc--c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIPNA--D 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p~~--D 224 (276)
..+++.++ .....+|||||||+|.++..++++.+ +++++|. |.+++.+++ .++++++.+|+.+ +++.. |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 44556555 66778999999999999999999976 7899998 888888765 3689999999987 55443 4
Q ss_pred EEEEccccc
Q 046375 225 ALLLKWVLH 233 (276)
Q Consensus 225 ~i~l~~vlh 233 (276)
.++ +|.-+
T Consensus 108 ~vv-~NlPY 115 (272)
T PRK00274 108 KVV-ANLPY 115 (272)
T ss_pred eEE-EeCCc
Confidence 443 44433
No 101
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.35 E-value=2.1e-06 Score=71.70 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=72.1
Q ss_pred hccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C-CC
Q 046375 156 AGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I-PN 222 (276)
Q Consensus 156 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~-p~ 222 (276)
..++ .....+|+|+|||+|.++..+++.. |..+++++|. |.+++.+++ .++++++.+|+.+ + . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 6677899999999999999998874 6789999999 888887654 3689999999876 2 3 34
Q ss_pred ccEEEEcccccCCCc--ccc----------------ccCHHHHHHhHhhCCCCc
Q 046375 223 ADALLLKWVLHNWSD--EAC----------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~--~~~----------------~rt~~e~~~ll~~aGf~~ 258 (276)
+|+|++........+ +.+ .-+..+....|++.||..
T Consensus 112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 999998432111100 000 124577888889999953
No 102
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=2.1e-06 Score=72.84 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=62.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------------CCCeEEEEccCCCC---
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------------------YDGVTHVSGDMFHT--- 219 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~d~~~~--- 219 (276)
.....+|||+|||.|..+..|+++ +.+++++|+ |..++.+.. ..+|++..+|+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345679999999999999999985 778999999 777765311 36799999999983
Q ss_pred -CCCccEEEEcccccCCCcccc
Q 046375 220 -IPNADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 220 -~p~~D~i~l~~vlh~~~~~~~ 240 (276)
.+.+|+|+-+-++|..+++..
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R 134 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMR 134 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHH
Confidence 235899999999999988775
No 103
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.34 E-value=7.7e-07 Score=67.48 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=56.2
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC--CccEEEEcccc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP--NADALLLKWVL 232 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p--~~D~i~l~~vl 232 (276)
.+|+|+|||+|.++..+++.. ..+++++|+ |..++.++. .+|++++.+|+++ +++ .+|+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 888877765 4789999999987 244 49999987665
Q ss_pred cCC
Q 046375 233 HNW 235 (276)
Q Consensus 233 h~~ 235 (276)
+..
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 543
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.31 E-value=8.3e-06 Score=68.81 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=70.9
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---C
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP---N 222 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p---~ 222 (276)
.++..++ ..+..+|||||||+|.++..+++... +++.+|. |.+++.+++ ..+++++.+|..+.++ .
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3444555 56778999999999999988887753 7899998 888877755 3469999999887443 4
Q ss_pred ccEEEEcccccCCCccccccCHHHHHHhHhhCCCCce
Q 046375 223 ADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
||+|++...++.. ...+.++|..-|.-+.
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVA 173 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEE
Confidence 9999998876655 3457777887774333
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.30 E-value=3e-06 Score=71.33 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=70.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p- 221 (276)
.-.+++.++ +....+|||||+|+|+++..+++.. +.-+++.+|. |.+++.+++ ..+|+++.+|....+|
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 344567776 7788999999999999999999986 4446899997 888888776 4589999999987554
Q ss_pred --CccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 222 --NADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 222 --~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
.||.|++.-..... +..|.++|+.-|
T Consensus 139 ~apfD~I~v~~a~~~i--------p~~l~~qL~~gG 166 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI--------PEALLEQLKPGG 166 (209)
T ss_dssp G-SEEEEEESSBBSS----------HHHHHTEEEEE
T ss_pred CCCcCEEEEeeccchH--------HHHHHHhcCCCc
Confidence 39999998766333 567888888777
No 106
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.29 E-value=1.5e-06 Score=75.37 Aligned_cols=82 Identities=15% Similarity=0.295 Sum_probs=62.5
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCCcc
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPNAD 224 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~~D 224 (276)
...+++.++ ..+..+|||||||.|.++..++++.+. ++++|. +.+++.+++ .++++++.+|+.+ +++.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345566666 667789999999999999999999874 888998 777776654 4789999999988 555555
Q ss_pred --EEEEcccccCCC
Q 046375 225 --ALLLKWVLHNWS 236 (276)
Q Consensus 225 --~i~l~~vlh~~~ 236 (276)
.++++|.-++++
T Consensus 94 ~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 94 KQLKVVSNLPYNIS 107 (253)
T ss_pred CcceEEEcCChhhH
Confidence 455666655543
No 107
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.26 E-value=2.4e-06 Score=77.99 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=58.5
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCC--
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIP-- 221 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p-- 221 (276)
++..+. ......+||||||+|.++..+++++|+..++++|+ +.++..+.+ .++|.++.+|... .+|
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34457999999999999999999999999999998 667665543 4689999999843 465
Q ss_pred CccEEEEcc
Q 046375 222 NADALLLKW 230 (276)
Q Consensus 222 ~~D~i~l~~ 230 (276)
.+|.|++..
T Consensus 192 s~D~I~lnF 200 (390)
T PRK14121 192 SVEKIFVHF 200 (390)
T ss_pred ceeEEEEeC
Confidence 389998754
No 108
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.24 E-value=1e-05 Score=68.30 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCeEEEEccCCCC---------CC--CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVITTAPVYDGVTHVSGDMFHT---------IP--NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~---------~p--~~D~i~l~~ 230 (276)
.+..+|||||||+|.++..++++. |..+++++|+..+. ...+++++.+|+.++ ++ .+|+|++..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 566799999999999999999987 55789999995432 234589999999873 33 399999877
Q ss_pred cccCCC
Q 046375 231 VLHNWS 236 (276)
Q Consensus 231 vlh~~~ 236 (276)
..|...
T Consensus 126 ~~~~~g 131 (209)
T PRK11188 126 APNMSG 131 (209)
T ss_pred CCccCC
Confidence 666554
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.24 E-value=4.8e-06 Score=69.42 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=57.4
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CC-CC
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TI-PN 222 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~-p~ 222 (276)
++..++ .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ .++++++.+|..+ .+ +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 445555 55678999999999999999999999999999999 888887765 3579999999865 23 23
Q ss_pred ccEEEE
Q 046375 223 ADALLL 228 (276)
Q Consensus 223 ~D~i~l 228 (276)
+|.+++
T Consensus 110 ~d~v~~ 115 (196)
T PRK07402 110 PDRVCI 115 (196)
T ss_pred CCEEEE
Confidence 566554
No 110
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.23 E-value=3e-06 Score=75.00 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-CccEEEEcccccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP-NADALLLKWVLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p-~~D~i~l~~vlh~ 234 (276)
...+|||||||+|.++..+++. +..+++++|. |.+++.+++ .+++.+..++.....+ .||+|+++...+.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV 237 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence 4589999999999999888865 4458999999 888877765 3567777776433333 4999988654332
Q ss_pred CCc--ccc----------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 235 WSD--EAC----------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 235 ~~~--~~~----------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
... .+. .....++.+.+++. |+.+++...
T Consensus 238 l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 238 IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEecc
Confidence 111 000 23566777777776 888776554
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.3e-06 Score=75.23 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=74.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeE----EEEccCCC-CCC-CccEEEEcc-
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVT----HVSGDMFH-TIP-NADALLLKW- 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~----~~~~d~~~-~~p-~~D~i~l~~- 230 (276)
..++.+++|||||+|.++++.++... .+++++|+ |..++.+++ .+.|. ....+..+ +.. .||+|+++=
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 35789999999999999999999754 36999999 888887776 33333 22222222 222 499987543
Q ss_pred --cccCCCcccc---------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 231 --VLHNWSDEAC---------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 231 --vlh~~~~~~~---------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
++-.+.++-. ....+...+.++++||.++++...++ ..-|.++|
T Consensus 239 A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~e-W~~i~~kr 299 (300)
T COG2264 239 AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREE-WVAIVGKR 299 (300)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCC-EEEEEEEc
Confidence 2221111111 23577889999999999999887644 55555554
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.21 E-value=3.3e-05 Score=64.22 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=81.2
Q ss_pred hhhcccChHHHH----HHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 046375 126 IDLASKDQQFNK----IFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVIT 201 (276)
Q Consensus 126 ~~~~~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~ 201 (276)
++.+.++|+... .|.+++..|.....+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 344456666554 4666666666666777777775 245567999999999999966542 346888998321
Q ss_pred hCCCCCCeEEEEccCCC-CCCC--ccEEEEcccccC--CCc--ccc------------------ccCHHHHHHhHhhCCC
Q 046375 202 TAPVYDGVTHVSGDMFH-TIPN--ADALLLKWVLHN--WSD--EAC------------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 202 ~a~~~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~--~~~--~~~------------------~rt~~e~~~ll~~aGf 256 (276)
.++ ++..|+.+ |+++ .|+++++..|-. |++ .++ .-+.+++.+.++..||
T Consensus 105 ----n~~--Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 105 ----NPR--VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGF 178 (219)
T ss_dssp ----STT--EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTE
T ss_pred ----CCC--EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCC
Confidence 233 47789977 8774 899998877754 333 222 1278999999999999
Q ss_pred CceEEEecCCccEEEEEec
Q 046375 257 PRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 257 ~~~~~~~~~~~~~vi~a~~ 275 (276)
+............+++..|
T Consensus 179 ~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 179 KLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp EEEEEE--STTEEEEEEEE
T ss_pred eEEecccCCCeEEEEEEEE
Confidence 9988755555666666554
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.18 E-value=3.8e-06 Score=60.84 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=63.8
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC------CCCCeEEEEccCCCCC---C-CccEEEEcccccCC
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP------VYDGVTHVSGDMFHTI---P-NADALLLKWVLHNW 235 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~------~~~ri~~~~~d~~~~~---p-~~D~i~l~~vlh~~ 235 (276)
+++|+|||.|.++..+++ .+..+++++|. +..+..++ ...++++..+|+.+.. + ++|++++..++|.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999999 77889999998 66665554 1568999999998832 2 49999999999875
Q ss_pred CccccccCHHHHHHhHhhCC
Q 046375 236 SDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 236 ~~~~~~rt~~e~~~ll~~aG 255 (276)
.+........+...+...|
T Consensus 80 -~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGG 98 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCC
Confidence 2222333444444554444
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.16 E-value=6e-06 Score=74.03 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=69.3
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--- 221 (276)
.+++.++ ..+..+|||||||+|.++..+++..+. .+++++|. |++++.+++ .++++++.+|..+..+
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3445555 566789999999999999999998864 47899998 888877654 4579999999876322
Q ss_pred CccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 222 NADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
.+|+|++...++.. ...|.+.|...|
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~LkpgG 174 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLKEGG 174 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcCCCC
Confidence 49999987655443 234666676666
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=98.16 E-value=4.4e-06 Score=71.07 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=55.1
Q ss_pred CceEEEeeCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC-CccEEEEc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSY---PHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP-NADALLLK 229 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~---p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p-~~D~i~l~ 229 (276)
..+|||+|||+|.++..++++. +..+++++|+ |.+++.+++ ..++.++.+|+.+ +++ .+|+|+++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence 5799999999999999999875 4678999999 888888877 5679999999986 444 49999874
No 116
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.16 E-value=5.5e-06 Score=73.39 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=63.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p 221 (276)
...+++..+ .....+|||||||.|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 345566665 6677899999999999999999975 46899998 778877654 3689999999987 566
Q ss_pred CccEEEEcccccCCCc
Q 046375 222 NADALLLKWVLHNWSD 237 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~ 237 (276)
.+|+++ +|.-++++.
T Consensus 101 ~~d~Vv-aNlPY~Ist 115 (294)
T PTZ00338 101 YFDVCV-ANVPYQISS 115 (294)
T ss_pred ccCEEE-ecCCcccCc
Confidence 788766 455555544
No 117
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.13 E-value=9.8e-06 Score=71.61 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=69.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC--C-C-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH--T-I- 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~--~-~- 220 (276)
..++++.+. ......+||.+||.|.++..+++.+| +.+++++|. |.+++.+++ .+|++++.+||.+ . +
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 456777776 45567999999999999999999996 789999999 999988765 3699999999976 1 2
Q ss_pred ---CCccEEEE--cccccCCCcccc
Q 046375 221 ---PNADALLL--KWVLHNWSDEAC 240 (276)
Q Consensus 221 ---p~~D~i~l--~~vlh~~~~~~~ 240 (276)
+.+|.|++ .-.-|.+++.++
T Consensus 86 ~~~~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 86 EGLGKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred cCCCccCEEEECCCccccccCCCcC
Confidence 24888875 444556666665
No 118
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.10 E-value=5.1e-06 Score=69.49 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCC-eEEEEccCCC--CCC-CccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDG-VTHVSGDMFH--TIP-NADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~r-i~~~~~d~~~--~~p-~~D~i~l~~vl 232 (276)
.+..+.||.|+|.|..+..++..+-+ ++-++|. +..++.+++ ..+ .++.+..+.+ |.+ .+|+|++-+|+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35789999999999999988765422 4677776 888887774 233 3455554443 554 49999999999
Q ss_pred cCCCcccc--------------------------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 233 HNWSDEAC--------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 233 h~~~~~~~--------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
-+.+|++- -|+.+.|+++|++||+++++.....+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 99999986 28999999999999999998766543
No 119
>PRK14967 putative methyltransferase; Provisional
Probab=98.08 E-value=9.1e-06 Score=69.18 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
.....+|||+|||+|.++..+++. +..+++++|+ |.+++.+++ .-+++++.+|+.+.++ .+|+|+++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence 445689999999999999999876 3358999998 888876654 3368899999987554 49999985
No 120
>PLN02672 methionine S-methyltransferase
Probab=98.08 E-value=5.4e-06 Score=84.31 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=54.8
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------------------CCCeEEEEccCCCCCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------------------YDGVTHVSGDMFHTIP 221 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------------------~~ri~~~~~d~~~~~p 221 (276)
..+|+|||||+|.+++.+++++|+.+++++|+ |.+++.+++ .+||+++.+|++++++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888876643 1489999999998653
Q ss_pred ----CccEEEE
Q 046375 222 ----NADALLL 228 (276)
Q Consensus 222 ----~~D~i~l 228 (276)
.+|+|+.
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 3899875
No 121
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.07 E-value=1.2e-05 Score=71.15 Aligned_cols=107 Identities=17% Similarity=0.080 Sum_probs=70.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEEccc-
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLLKWV- 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l~~v- 231 (276)
.+..+|||||||+|.+++..++... .+++++|. |..++.+++ .+++.+. . ..+.+ .||+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 3557999999999999999999754 37999999 887777765 4566553 1 22233 4999985433
Q ss_pred --ccCCCcccc---------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 232 --LHNWSDEAC---------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 232 --lh~~~~~~~---------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
|-...+.-. .....++.+.+++ ||+..+....++ ...+.++|
T Consensus 236 ~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~-W~~l~~~K 294 (295)
T PF06325_consen 236 DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGE-WVALVFKK 294 (295)
T ss_dssp HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETT-EEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECC-EEEEEEEe
Confidence 211111111 2457888888887 999988887655 55555554
No 122
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=4.9e-06 Score=70.20 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=80.4
Q ss_pred ceEEEeeCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC-----CC-C-ccEEEEcc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPH--IKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT-----IP-N-ADALLLKW 230 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~--l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~-----~p-~-~D~i~l~~ 230 (276)
.+|++||||.|...-.+++.+|+ +++...|. |..++..++ ..|+.....|+..| .+ + .|++.+-.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999999 99999998 989988876 45777777787652 22 3 89999999
Q ss_pred cccCCCcccc----------------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 231 VLHNWSDEAC----------------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 231 vlh~~~~~~~----------------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
||-..+++.- -.+.+++.+|+.++||..
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccch
Confidence 9998887764 027999999999999998
Q ss_pred eEE
Q 046375 259 YRI 261 (276)
Q Consensus 259 ~~~ 261 (276)
++.
T Consensus 233 ~~~ 235 (264)
T KOG2361|consen 233 VQL 235 (264)
T ss_pred hcc
Confidence 765
No 123
>PRK03612 spermidine synthase; Provisional
Probab=98.03 E-value=1.9e-05 Score=75.52 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=55.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-------------CCCeEEEEccCCC---CCC-Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV-------------YDGVTHVSGDMFH---TIP-NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~d~~~---~~p-~~ 223 (276)
+++++|||||||+|..+..+++ +|. .+++++|+ |++++.+++ .+|++++.+|..+ ..+ .+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999997 566 78999999 999988765 2699999999876 234 49
Q ss_pred cEEEEcc
Q 046375 224 DALLLKW 230 (276)
Q Consensus 224 D~i~l~~ 230 (276)
|+|++..
T Consensus 375 DvIi~D~ 381 (521)
T PRK03612 375 DVIIVDL 381 (521)
T ss_pred CEEEEeC
Confidence 9998864
No 124
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.99 E-value=2.2e-05 Score=66.56 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=76.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------------CCCeEEEEccCCC-C--
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------------------YDGVTHVSGDMFH-T-- 219 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~d~~~-~-- 219 (276)
.....+|++.|||.|.-+..|+++ +.+++++|+ |..++.+.+ .++|++.++|||+ +
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456689999999999999999997 578999999 777765410 4689999999999 2
Q ss_pred CC-CccEEEEcccccCCCccccc----------------------------------cCHHHHHHhHhhCCCCceEEEe
Q 046375 220 IP-NADALLLKWVLHNWSDEACE----------------------------------RTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 220 ~p-~~D~i~l~~vlh~~~~~~~~----------------------------------rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
.. .||+|+=.-+|+..+++.+. -+.+|+.+++. .+|++..+..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 21 49999999999999988871 27899999999 6888766643
No 125
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.9e-05 Score=64.49 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCCCccEEEEcccccCC--
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIPNADALLLKWVLHNW-- 235 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~-- 235 (276)
..++|+|+|||+|.+++..+-..|. +++++|. |+.++.+++ .++|.|+..|+.+--..+|.++++==+--|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 5688999999999999999988765 7999999 999988876 578999999988733346766653221111
Q ss_pred -Ccccc----------------ccCHHHHHHhHhhCCCCceEE
Q 046375 236 -SDEAC----------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 236 -~~~~~----------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
.|..- -.+.+-+.+..+++|+++.-.
T Consensus 124 haDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEEE
Confidence 11111 137888899999999887655
No 126
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=1.9e-05 Score=67.88 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=52.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEc----cCCCCCC---C-ccE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSG----DMFHTIP---N-ADA 225 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~----d~~~~~p---~-~D~ 225 (276)
+.+...++|+|||+|.++..++.-.|+.+++.+|. +.++..+.+ .+||..+.. |.+.|.| + .|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 34556899999999999999999999999999998 666666554 788888854 4444433 3 787
Q ss_pred EEE
Q 046375 226 LLL 228 (276)
Q Consensus 226 i~l 228 (276)
++.
T Consensus 226 lvs 228 (328)
T KOG2904|consen 226 LVS 228 (328)
T ss_pred Eec
Confidence 665
No 127
>PLN02366 spermidine synthase
Probab=97.98 E-value=1.4e-05 Score=71.32 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=53.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC---CCC--CccE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH---TIP--NADA 225 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~~p--~~D~ 225 (276)
+++++||+||||.|..+..+++. |+ .+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .+|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46899999999999999999865 65 57899999 778887765 3699999999754 343 4999
Q ss_pred EEEc
Q 046375 226 LLLK 229 (276)
Q Consensus 226 i~l~ 229 (276)
|++-
T Consensus 169 Ii~D 172 (308)
T PLN02366 169 IIVD 172 (308)
T ss_pred EEEc
Confidence 9873
No 128
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.98 E-value=2.4e-05 Score=70.53 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
+....+|+|+|||+|.++..++.. ..+++++|. +.++..++. .+.+.+..+|+.+ |++ .+|+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566789999999999999887664 678999999 888876654 2348899999988 554 3899998411
Q ss_pred cc----CCCc---c---cc-----------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 232 LH----NWSD---E---AC-----------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 232 lh----~~~~---~---~~-----------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
.. .... + +. ..+..+|.++++++|| ++..+..
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chheeee
Confidence 10 0000 0 00 1356688999999999 7776554
No 129
>PRK00811 spermidine synthase; Provisional
Probab=97.97 E-value=1.4e-05 Score=70.61 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=55.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCC--C-CC-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFH--T-IP-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~--~-~p-~~D~i 226 (276)
+++++||+||||.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .+|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655568999999 888887765 4689999999876 2 23 49999
Q ss_pred EEcc
Q 046375 227 LLKW 230 (276)
Q Consensus 227 ~l~~ 230 (276)
++-.
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 8744
No 130
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.94 E-value=3.1e-05 Score=66.53 Aligned_cols=74 Identities=15% Similarity=0.351 Sum_probs=62.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p 221 (276)
.+.+++.-+ ......||+||+|+|.++..+++. ..+++.+++ |.+++...+ +..++++.||+++ ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 456667666 778899999999999999999998 567899988 888876654 5789999999998 889
Q ss_pred CccEEEE
Q 046375 222 NADALLL 228 (276)
Q Consensus 222 ~~D~i~l 228 (276)
-+|+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8998775
No 131
>PRK01581 speE spermidine synthase; Validated
Probab=97.93 E-value=1.7e-05 Score=71.65 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------------CCCeEEEEccCCC---CCC-Ccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------------YDGVTHVSGDMFH---TIP-NAD 224 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~d~~~---~~p-~~D 224 (276)
+++++||+||||.|..+..+++..|..+++++|+ |.|++.+++ .+|++++.+|..+ ..+ .+|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999987655678999999 889887763 4799999999986 233 499
Q ss_pred EEEEc
Q 046375 225 ALLLK 229 (276)
Q Consensus 225 ~i~l~ 229 (276)
+|++-
T Consensus 229 VIIvD 233 (374)
T PRK01581 229 VIIID 233 (374)
T ss_pred EEEEc
Confidence 99986
No 132
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=2.9e-05 Score=65.63 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=45.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV 205 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~ 205 (276)
.+..+..+...|-.+..+|||||.+|.++..+++.+-...++++|+ |..|..|++
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK 100 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence 3455565554466789999999999999999999999889999999 777777654
No 133
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.88 E-value=7.2e-05 Score=63.64 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC------------------CCCCeEEEEccCCC-C-C-
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP------------------VYDGVTHVSGDMFH-T-I- 220 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~d~~~-~-~- 220 (276)
.+..+|++.|||.|.-+.-|++. +.+++++|+ |..++.+. ...+|++.++|+|+ + .
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999997 678999999 66666531 15689999999998 3 2
Q ss_pred ---CCccEEEEcccccCCCcccc
Q 046375 221 ---PNADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 221 ---p~~D~i~l~~vlh~~~~~~~ 240 (276)
..+|+|+=+-+++.++++.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R 142 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLR 142 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHH
Confidence 24999999999999998877
No 134
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.88 E-value=1.7e-05 Score=74.46 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC----
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT---- 219 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~---- 219 (276)
...+++.++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+.
T Consensus 286 ~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 286 VARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 344445444 4456899999999999999999986 58999998 889887765 35799999998652
Q ss_pred -CC--CccEEEEc-------ccccCCCc---ccc---ccCHHHH---HHhHhhCCCCceEEEecC
Q 046375 220 -IP--NADALLLK-------WVLHNWSD---EAC---ERTELEW---KNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 220 -~p--~~D~i~l~-------~vlh~~~~---~~~---~rt~~e~---~~ll~~aGf~~~~~~~~~ 265 (276)
++ .+|+|++. .+++.... +.. .-.+..+ -..|.+.||++.++.+..
T Consensus 362 ~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGMLD 426 (443)
T ss_pred hhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEEec
Confidence 22 38999862 22211111 000 0122222 234456799999987773
No 135
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.86 E-value=3.3e-05 Score=62.30 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=63.6
Q ss_pred EEeec-hHHHhhCCC---------CCCeEEEEccCCC-CCCC--ccEEEEcccccCCCcccc------------------
Q 046375 192 INFDL-PHVITTAPV---------YDGVTHVSGDMFH-TIPN--ADALLLKWVLHNWSDEAC------------------ 240 (276)
Q Consensus 192 ~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~~~~------------------ 240 (276)
+++|. ++|++.+++ ..+|+++.+|+.+ |++. +|+|++..++|+++|...
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 36888 889987743 2479999999987 7663 999999999999987554
Q ss_pred --------------------------------------------ccCHHHHHHhHhhCCCCceEEEecC-CccEEEEE
Q 046375 241 --------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP-ALQCIIES 273 (276)
Q Consensus 241 --------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~a 273 (276)
-.+.+|+.++|+++||+.++..... |..++..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 0379999999999999998887774 33444433
No 136
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.86 E-value=8.5e-06 Score=68.29 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHhhhhhhHH----HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---C
Q 046375 136 NKIFNEGMACNAKFLTR----EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVY---D 207 (276)
Q Consensus 136 ~~~f~~~m~~~~~~~~~----~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~---~ 207 (276)
..+|....-..=....| +.+...+ ....++++|+|||+|..+.+|..+-.. .+++|+ ..|++.+.+. +
T Consensus 95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eKg~YD 170 (287)
T COG4976 95 AERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEKGLYD 170 (287)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhccchH
Confidence 45566665533222233 3344444 445899999999999999999887654 488999 7899988762 2
Q ss_pred CeEEEE-ccCCCC--CCCccEEEEcccccCCCcccc-------------------c--------------c---CHHHHH
Q 046375 208 GVTHVS-GDMFHT--IPNADALLLKWVLHNWSDEAC-------------------E--------------R---TELEWK 248 (276)
Q Consensus 208 ri~~~~-~d~~~~--~p~~D~i~l~~vlh~~~~~~~-------------------~--------------r---t~~e~~ 248 (276)
++-.-. .+|... ...+|+|....||-+..+-+- | | +..-..
T Consensus 171 ~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr 250 (287)
T COG4976 171 TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVR 250 (287)
T ss_pred HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHH
Confidence 221111 124332 224999999999988877554 0 1 455569
Q ss_pred HhHhhCCCCceEEEec
Q 046375 249 NIPEKGGSPRYRIIKI 264 (276)
Q Consensus 249 ~ll~~aGf~~~~~~~~ 264 (276)
.+++..||+++++.++
T Consensus 251 ~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 251 ALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHhcCceEEEeecc
Confidence 9999999999998655
No 137
>PRK04148 hypothetical protein; Provisional
Probab=97.86 E-value=6.8e-05 Score=58.31 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCceEEEeeCCccH-HHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC----CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGG-LISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP----NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~-~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p----~~D~i~l~~ 230 (276)
+..+++|||||+|. ++..|.+. +..++++|. |..++.+++. .+.++..|+|+|-+ ++|+|...+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 45789999999996 77777765 578999998 8877766542 36889999999633 599998766
No 138
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.84 E-value=2.2e-05 Score=65.48 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=54.0
Q ss_pred HHHHhccccCCCC--CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCe--EEEEccCCC--CCC-C-
Q 046375 152 REILAGYKHGFDS--LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGV--THVSGDMFH--TIP-N- 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri--~~~~~d~~~--~~p-~- 222 (276)
...++.++ ++. +.-|||||||+|.-+..|... +...+++|. |+|++.+.+ ..+ .++-+|+=+ |++ +
T Consensus 38 eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 38 ERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCc
Confidence 33455555 554 788999999999998888764 567899998 999998875 222 345667766 443 4
Q ss_pred ccEEEEcccc
Q 046375 223 ADALLLKWVL 232 (276)
Q Consensus 223 ~D~i~l~~vl 232 (276)
||-++.-..+
T Consensus 113 FDg~ISISAv 122 (270)
T KOG1541|consen 113 FDGVISISAV 122 (270)
T ss_pred cceEEEeeee
Confidence 9987755444
No 139
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.83 E-value=3.9e-05 Score=68.77 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C-CC-CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T-IP-NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~-~p-~~D~i~l~ 229 (276)
...+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++|+.+|+.+ + .. .+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 468999998 888887765 3579999999976 2 22 38998865
No 140
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00011 Score=61.29 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=71.0
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---C
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP---N 222 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p---~ 222 (276)
.+++.++ .+...+||+||||+|+.+.-+++..- +++.+|+ +..++.|++ .++|.++.+|-..-+| .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3456666 78889999999999999999999865 8899998 887777765 4569999999998555 3
Q ss_pred ccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 223 ADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
||.|+..-..-.. +..|.++|...|
T Consensus 139 yD~I~Vtaaa~~v--------P~~Ll~QL~~gG 163 (209)
T COG2518 139 YDRIIVTAAAPEV--------PEALLDQLKPGG 163 (209)
T ss_pred cCEEEEeeccCCC--------CHHHHHhcccCC
Confidence 9999987665443 345666676666
No 141
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.78 E-value=0.00028 Score=63.16 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------CCCeEEEE----ccCCCCC--C--CccEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------YDGVTHVS----GDMFHTI--P--NADAL 226 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~----~d~~~~~--p--~~D~i 226 (276)
...++||||||+|.+...++.+.++.+++++|+ |..++.+++ .+||++.. .+++..+ + .+|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999999999999999999999999 888877765 35787754 2444432 2 39999
Q ss_pred EEcc
Q 046375 227 LLKW 230 (276)
Q Consensus 227 ~l~~ 230 (276)
+++=
T Consensus 194 vcNP 197 (321)
T PRK11727 194 LCNP 197 (321)
T ss_pred EeCC
Confidence 8753
No 142
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.76 E-value=1.1e-05 Score=52.33 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+.|++.|...+++.|+.|||+++|++. ..+.|+|..|+..|+|.+++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~----stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPK----STVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCcCeecCc
Confidence 457888887667789999999999987 99999999999999999864
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.76 E-value=5.5e-05 Score=71.05 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=58.4
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCC
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIP 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p 221 (276)
.++..++ .....+|||+|||+|..+..+++.. |+.+++++|+ +..++.+++ .++|+++.+|+.+ +++
T Consensus 241 lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 241 LVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 3344555 5566899999999999999999986 6789999999 888877654 2459999999976 244
Q ss_pred -CccEEEE
Q 046375 222 -NADALLL 228 (276)
Q Consensus 222 -~~D~i~l 228 (276)
.+|+|++
T Consensus 319 ~~fD~Vl~ 326 (444)
T PRK14902 319 EKFDKILV 326 (444)
T ss_pred ccCCEEEE
Confidence 4999986
No 144
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.74 E-value=7.4e-05 Score=69.82 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=59.3
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC---CC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT---IP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~---~p- 221 (276)
..++..++ .....+|||+|||+|..+..+++..++.+++++|. +.+++.+++ .-+++++.+|..+. ++
T Consensus 234 ~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 34445555 55678999999999999999999998889999998 888887765 23478999999862 22
Q ss_pred -CccEEEE
Q 046375 222 -NADALLL 228 (276)
Q Consensus 222 -~~D~i~l 228 (276)
.||.|++
T Consensus 312 ~~fD~Vl~ 319 (427)
T PRK10901 312 QPFDRILL 319 (427)
T ss_pred CCCCEEEE
Confidence 3999984
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.74 E-value=7.5e-05 Score=65.48 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC---CCC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH---TIP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~~p-~~D~i~ 227 (276)
+++++||+||||.|.++..+++..+..+++++|+ |.+++.+++ .+|++++.+|.++ ..+ .+|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999998 888876654 3689999988765 223 499999
Q ss_pred Eccc
Q 046375 228 LKWV 231 (276)
Q Consensus 228 l~~v 231 (276)
+...
T Consensus 151 ~D~~ 154 (270)
T TIGR00417 151 VDST 154 (270)
T ss_pred EeCC
Confidence 8654
No 146
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.73 E-value=0.00039 Score=60.63 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCceEEEeeCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhhCCC----------------------------
Q 046375 164 SLKSLVDVAGGIGG----LISEIVKSYP-----HIKGINFDL-PHVITTAPV---------------------------- 205 (276)
Q Consensus 164 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~l~~~~~Dl-p~~~~~a~~---------------------------- 205 (276)
+.-+|.-.||++|. +++.+.+..| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 6677788886 467899998 788877653
Q ss_pred -------CCCeEEEEccCCCC--CCC-ccEEEEcccccCCCccccccCHHHHHHhHhhCCCCce
Q 046375 206 -------YDGVTHVSGDMFHT--IPN-ADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 206 -------~~ri~~~~~d~~~~--~p~-~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
...|.|..+|.+++ .++ +|+|+|+|||=+++.+...+-...+...|...|+=.+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 25789999999983 454 9999999999999988887778888888888886543
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.73 E-value=0.00012 Score=60.59 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCeEEEEccCCCC---------CC--CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVITTAPVYDGVTHVSGDMFHT---------IP--NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~---------~p--~~D~i~l~ 229 (276)
.....+|||+|||+|.++..+++++ +..+++++|+.... ...+++++.+|+.++ ++ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4567899999999999999999887 66789999994432 245688999998762 33 39999985
Q ss_pred cc
Q 046375 230 WV 231 (276)
Q Consensus 230 ~v 231 (276)
..
T Consensus 106 ~~ 107 (188)
T TIGR00438 106 AA 107 (188)
T ss_pred CC
Confidence 43
No 148
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.73 E-value=3.8e-05 Score=63.99 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=63.1
Q ss_pred CCCceEEEeeCCccH----HHHHHHHH----CC-CCeEEEeec-hHHHhhCCC---------------------------
Q 046375 163 DSLKSLVDVAGGIGG----LISEIVKS----YP-HIKGINFDL-PHVITTAPV--------------------------- 205 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~----~~~~l~~~----~p-~l~~~~~Dl-p~~~~~a~~--------------------------- 205 (276)
.+.-+|+..||++|. +++.+.+. .+ +.++++.|+ +.+++.|++
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999996 33334441 12 457899999 888887653
Q ss_pred -------CCCeEEEEccCCC-C-CC-CccEEEEcccccCCCccccccCHHHHHHhHhhCCCC
Q 046375 206 -------YDGVTHVSGDMFH-T-IP-NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSP 257 (276)
Q Consensus 206 -------~~ri~~~~~d~~~-~-~p-~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~ 257 (276)
..+|+|..+|+.+ + .+ .+|+|+|+|||-+++++...+..+.+...|..-|+=
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEE
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEE
Confidence 3689999999998 3 22 499999999999999888766666666666666643
No 149
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.72 E-value=9.4e-05 Score=62.09 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=76.5
Q ss_pred EEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--C-ccEEEEc-------
Q 046375 168 LVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--N-ADALLLK------- 229 (276)
Q Consensus 168 vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~-~D~i~l~------- 229 (276)
|+||||-+|++.+.|+++..--+++..|. |+-++.+++ .++|++..+|=+++++ + .|+|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 68999999999999999998888999998 887777765 6899999999888654 3 7777653
Q ss_pred -ccccCCCccc----c-----ccCHHHHHHhHhhCCCCceEEEec--CC-ccEEEEEec
Q 046375 230 -WVLHNWSDEA----C-----ERTELEWKNIPEKGGSPRYRIIKI--PA-LQCIIESYP 275 (276)
Q Consensus 230 -~vlh~~~~~~----~-----~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~vi~a~~ 275 (276)
.+|-.-++.- . ......+++||.+.||.+++-.-. .+ ++-||.+.+
T Consensus 81 ~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAER 139 (205)
T ss_dssp HHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEe
Confidence 3343222211 1 347889999999999998775433 33 678887765
No 150
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.72 E-value=4.4e-05 Score=64.06 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=50.5
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------------CCCeEEEEccC
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------------YDGVTHVSGDM 216 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~d~ 216 (276)
.+++.++ +.....++|||||.|......+..++--+.+++++ |...+.+.. ..++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4455555 66788999999999999999888776556999998 665544432 46789999999
Q ss_pred CC-C-----CCCccEEEEcccc
Q 046375 217 FH-T-----IPNADALLLKWVL 232 (276)
Q Consensus 217 ~~-~-----~p~~D~i~l~~vl 232 (276)
.+ + +.++|+|++++.+
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT
T ss_pred cccHhHhhhhcCCCEEEEeccc
Confidence 98 2 3469999999975
No 151
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.70 E-value=6.5e-05 Score=62.81 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=50.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCC---C-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTI---P-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~---p-~~D~i~l 228 (276)
...+|||+|||+|.++..++.+.. .+++.+|. |.+++.+++ ..+++++.+|+++.+ . .+|+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence 357999999999999998766654 58999998 887776655 357999999997622 2 3899876
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.70 E-value=5.9e-05 Score=62.88 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=43.1
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
..+||||||.|.++..+++++|+..++++|. ...+..+.. ..++.++.+|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 3999999999999999999999999999998 444433322 7899999999877
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.62 E-value=8.7e-05 Score=60.68 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=47.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------CCCeEEEEccCCCC-----C-C-CccE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV---------YDGVTHVSGDMFHT-----I-P-NADA 225 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~---------~~ri~~~~~d~~~~-----~-p-~~D~ 225 (276)
..+..+||++|||.|..++.+++..+..++++-|.+++++.++. ..++++...|.-++ . + .+|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 44678999999999999999999877889999999777765543 47889999887652 2 2 4999
Q ss_pred EEEcccccC
Q 046375 226 LLLKWVLHN 234 (276)
Q Consensus 226 i~l~~vlh~ 234 (276)
|+.+.|+|+
T Consensus 123 IlasDv~Y~ 131 (173)
T PF10294_consen 123 ILASDVLYD 131 (173)
T ss_dssp EEEES--S-
T ss_pred EEEecccch
Confidence 999999986
No 154
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.60 E-value=9.1e-05 Score=63.58 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=55.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------CCc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------PNA 223 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p~~ 223 (276)
..++++|||||||+|+-+..++...| +.+++.+|. |+.++.+++ .++|+++.||..+ + + +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44689999999999999999998865 679999998 888877765 5789999999976 1 1 248
Q ss_pred cEEEEc
Q 046375 224 DALLLK 229 (276)
Q Consensus 224 D~i~l~ 229 (276)
|+|++-
T Consensus 146 D~VfiD 151 (234)
T PLN02781 146 DFAFVD 151 (234)
T ss_pred CEEEEC
Confidence 988764
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.58 E-value=0.00028 Score=66.16 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=63.8
Q ss_pred cchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccccC--CCCCceEEEeeCCccHHHHHHHHHC----CCCeEEEeec-
Q 046375 124 AYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKHG--FDSLKSLVDVAGGIGGLISEIVKSY----PHIKGINFDL- 196 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~l~~~~~Dl- 196 (276)
..|+.+++|+..-..|.+|+.. .+.+..... -.+.+.|+|||||+|-++...++.. -..++++++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4688888898877778777632 222222200 0135789999999999987766553 4568999986
Q ss_pred hHHHhhC----CC---CCCeEEEEccCCC-CCCC-ccEEEE
Q 046375 197 PHVITTA----PV---YDGVTHVSGDMFH-TIPN-ADALLL 228 (276)
Q Consensus 197 p~~~~~a----~~---~~ri~~~~~d~~~-~~p~-~D~i~l 228 (276)
|..+... +. .++|+++.+|+.+ ..|. +|+|+.
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 4433221 11 6899999999998 6774 999974
No 156
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.55 E-value=0.0012 Score=56.52 Aligned_cols=137 Identities=17% Similarity=0.086 Sum_probs=91.0
Q ss_pred chhhcccChHHHHHHHHHH----HhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHH
Q 046375 125 YIDLASKDQQFNKIFNEGM----ACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVI 200 (276)
Q Consensus 125 ~~~~~~~~~~~~~~f~~~m----~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~ 200 (276)
.++.+.++|.....|++.. ..|-......+++.+. .-++...|.|+|||.+.++. .- .-.+.-+||-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVAV- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh----cc-ccceeeeeeecC-
Confidence 3455566777666554444 4454455677777765 23567899999999998887 11 225788898332
Q ss_pred hhCCCCCCeEEEEccCCC-CCCC--ccEEEEcccccC--CCc--ccc------------------ccCHHHHHHhHhhCC
Q 046375 201 TTAPVYDGVTHVSGDMFH-TIPN--ADALLLKWVLHN--WSD--EAC------------------ERTELEWKNIPEKGG 255 (276)
Q Consensus 201 ~~a~~~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~--~~~--~~~------------------~rt~~e~~~ll~~aG 255 (276)
.+| +++.|+.+ |+++ +|+++++..|-- |.+ .++ ..+..++...|...|
T Consensus 211 -----~~~--V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 211 -----NER--VIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLG 283 (325)
T ss_pred -----CCc--eeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcC
Confidence 333 48889998 7763 898887666543 322 122 136788999999999
Q ss_pred CCceEEEecCCccEEEEEec
Q 046375 256 SPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 256 f~~~~~~~~~~~~~vi~a~~ 275 (276)
|.+..+........+++..|
T Consensus 284 F~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 284 FDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred CeeeehhhhcceEEEEEEec
Confidence 99988776666677776544
No 157
>PLN02823 spermine synthase
Probab=97.52 E-value=0.00017 Score=65.11 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~ 227 (276)
+++++||.||||.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|.++ . .+ .+|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999998766778999999 999988875 4799999999876 2 23 499998
Q ss_pred Ec
Q 046375 228 LK 229 (276)
Q Consensus 228 l~ 229 (276)
+-
T Consensus 182 ~D 183 (336)
T PLN02823 182 GD 183 (336)
T ss_pred ec
Confidence 75
No 158
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00018 Score=63.21 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC---CCC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH---TIP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~~p-~~D~i~ 227 (276)
+++++||=||||.|..+..+++..+.-+++.+|+ |.|++.+++ .+|++++.+|-.+ ..+ .+|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4567999999999999999999988889999999 999998876 3899999999887 355 499988
Q ss_pred Ecc
Q 046375 228 LKW 230 (276)
Q Consensus 228 l~~ 230 (276)
+-.
T Consensus 155 ~D~ 157 (282)
T COG0421 155 VDS 157 (282)
T ss_pred EcC
Confidence 644
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.50 E-value=0.00047 Score=58.81 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=71.1
Q ss_pred HHHHHhccccCC-CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHH-hhCCCCCCeE-EEEccCCC----CC--
Q 046375 151 TREILAGYKHGF-DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVI-TTAPVYDGVT-HVSGDMFH----TI-- 220 (276)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~-~~a~~~~ri~-~~~~d~~~----~~-- 220 (276)
...+++.++ . ....++||||||+|.++..+++. +-.+++++|. +.++ ...++..|+. +...|+.. .+
T Consensus 63 L~~~l~~~~--~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFN--IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcC--CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 344555554 3 35679999999999999999997 4457999999 5344 4455566654 33445542 12
Q ss_pred --CCccEEEEcccc--c----CCCcccc---------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 221 --PNADALLLKWVL--H----NWSDEAC---------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 221 --p~~D~i~l~~vl--h----~~~~~~~---------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+.+|+.+++..+ - ...+.++ .+...++...+.+.||++..+.+.
T Consensus 140 d~~~~DvsfiS~~~~l~~i~~~l~~~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 140 DFATFDVSFISLISILPELDLLLNPNDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred CceeeeEEEeehHhHHHHHHHHhCcCeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 238988876542 1 1111111 124667777788889998877654
No 160
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00063 Score=58.85 Aligned_cols=80 Identities=14% Similarity=0.307 Sum_probs=58.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN-- 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~-- 222 (276)
.+.+++..+ ......|++||+|.|.++..|+++... ++++++ +.+++..++ .++++++.+|+.+ ++|+
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 566777776 566889999999999999999999765 566666 555555444 6899999999998 7774
Q ss_pred -ccEEEEcccccCC
Q 046375 223 -ADALLLKWVLHNW 235 (276)
Q Consensus 223 -~D~i~l~~vlh~~ 235 (276)
.+.+ .+|.-++.
T Consensus 95 ~~~~v-VaNlPY~I 107 (259)
T COG0030 95 QPYKV-VANLPYNI 107 (259)
T ss_pred CCCEE-EEcCCCcc
Confidence 3443 34444443
No 161
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.47 E-value=0.0002 Score=63.79 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=55.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
+.+.|||||||+|.++.-.++.. -.+++++|-.++++.+++ .+.|+++.|.+.+ .+| ..|+|+.-++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 57999999999999999999987 457999999888877665 6779999998887 455 5999975443
No 162
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.46 E-value=0.00016 Score=66.34 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=50.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C-C-CCccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T-I-PNADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~-~-p~~D~i~l 228 (276)
...+|+|+|||+|.++..++.+ ..+++++|. |..++.+++ .++++++.+|+.+ + . ..+|+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 3478999999999999999964 468999998 888877765 3479999999865 2 2 24898876
No 163
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.43 E-value=0.0008 Score=62.90 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC-C--
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT-I-- 220 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~-~-- 220 (276)
..++..++ .....+|+|+|||+|..+..+++..|+.+++++|. +.+++.+++ ..++.+..+|...+ .
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 34445555 55678999999999999999999998889999998 888877654 12345577777652 2
Q ss_pred C--CccEEEE
Q 046375 221 P--NADALLL 228 (276)
Q Consensus 221 p--~~D~i~l 228 (276)
+ .||.|++
T Consensus 306 ~~~~fD~Vll 315 (426)
T TIGR00563 306 ENEQFDRILL 315 (426)
T ss_pred cccccCEEEE
Confidence 2 3999985
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.42 E-value=0.00014 Score=68.11 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=55.0
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C---CC
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T---IP 221 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~---~p 221 (276)
+...+. ..+..+|+|+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+ + ..
T Consensus 284 ~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALE--LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 344444 4566899999999999999999874 47899998 888887765 3589999999865 1 21
Q ss_pred --CccEEEE
Q 046375 222 --NADALLL 228 (276)
Q Consensus 222 --~~D~i~l 228 (276)
.+|+|++
T Consensus 360 ~~~~D~vi~ 368 (431)
T TIGR00479 360 GQIPDVLLL 368 (431)
T ss_pred CCCCCEEEE
Confidence 3898886
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.41 E-value=0.00029 Score=62.39 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=53.6
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEE
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLL 228 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l 228 (276)
.+.|||||||+|.++.-.++.. -.++..++-.+|.+.++. .+||++++|-+.+ ++|+ +|+++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviIS 249 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIIS 249 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEe
Confidence 4889999999999998888774 346889998888887765 7999999999998 8996 999874
No 166
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.40 E-value=0.00035 Score=60.96 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=61.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN-- 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~-- 222 (276)
+..+++.++ ......|+|||+|.|.++..|++.. .+++++|. +..++..++ .++++++.+|+++ +.+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 566777776 6688999999999999999999997 67899987 777666554 6899999999998 3332
Q ss_pred --ccEEEEcccccCC
Q 046375 223 --ADALLLKWVLHNW 235 (276)
Q Consensus 223 --~D~i~l~~vlh~~ 235 (276)
-.+.+.+|.-++.
T Consensus 95 ~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNI 109 (262)
T ss_dssp SSSEEEEEEEETGTG
T ss_pred cCCceEEEEEecccc
Confidence 4455666655433
No 167
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.38 E-value=0.00027 Score=62.31 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=74.8
Q ss_pred CCceEEEeeCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhhCCC-----------------------------
Q 046375 164 SLKSLVDVAGGIGG----LISEIVKSYP----HIKGINFDL-PHVITTAPV----------------------------- 205 (276)
Q Consensus 164 ~~~~vlDvGgG~G~----~~~~l~~~~p----~l~~~~~Dl-p~~~~~a~~----------------------------- 205 (276)
+.-+|+..||++|. +++.+.+..+ +.++++.|+ +.+++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999996 3344555433 367899998 777776543
Q ss_pred --------CCCeEEEEccCCC-CCC---CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCce
Q 046375 206 --------YDGVTHVSGDMFH-TIP---NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 206 --------~~ri~~~~~d~~~-~~p---~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
..+|+|..+|+.+ ++| .+|+|+|+||+.+++++...+-...+...|..-|+=.+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2578999999998 443 49999999999999998888888889999998886443
No 168
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.38 E-value=0.00041 Score=65.22 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l 228 (276)
.....+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+..+ .||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 44568999999999999999988764 468999998 888877765 3478999999877323 3999986
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.37 E-value=0.0004 Score=59.14 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=44.9
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCC-----CCCeEEEEccCCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL--PHVITTAPV-----YDGVTHVSGDMFH 218 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl--p~~~~~a~~-----~~ri~~~~~d~~~ 218 (276)
...+||||||.|.++..+++++|+..++++|. +.+....+. ..+|.++++|..+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~ 109 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE 109 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 36899999999999999999999999999998 555444333 3389999999876
No 170
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.35 E-value=0.00035 Score=47.94 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=49.5
Q ss_pred HHHcChhhhhhhCCC-CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 7 AIELRIPDIIHSHGG-PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 7 a~~l~lf~~L~~~~~-~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
..+-.|+..|...|+ ++|+.|||..+|++. ..+.++|..|...|+|.+.+. +++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~----~~v~r~L~~L~~~G~V~~~~~---~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPK----KEVNRVLYSLEKKGKVCKQGG---TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCC---CCCceEeec
Confidence 456678899988744 299999999999977 899999999999999998752 246788764
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.35 E-value=0.00012 Score=61.53 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-----C--CCcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-----I--PNAD 224 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-----~--p~~D 224 (276)
.++++||+||++.|+-+..+++..| +.+++.+|. |+..+.+++ .+||+++.||..+ + - ..||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3689999999999999999999987 589999998 888877765 5799999999875 1 1 1499
Q ss_pred EEEEcc
Q 046375 225 ALLLKW 230 (276)
Q Consensus 225 ~i~l~~ 230 (276)
+|++-.
T Consensus 124 ~VFiDa 129 (205)
T PF01596_consen 124 FVFIDA 129 (205)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 988743
No 172
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.34 E-value=0.0013 Score=58.32 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=68.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC------
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH------ 218 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~------ 218 (276)
.+++++.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 456677776 55667999999999999999999998899999999 888887765 4699999999975
Q ss_pred C--CCCccEEEE--cccccCCCcccc
Q 046375 219 T--IPNADALLL--KWVLHNWSDEAC 240 (276)
Q Consensus 219 ~--~p~~D~i~l--~~vlh~~~~~~~ 240 (276)
. .+.+|.|++ .-.-|.+++.++
T Consensus 87 ~~~~~~vDgIl~DLGvSS~Qld~~~R 112 (305)
T TIGR00006 87 ELLVTKIDGILVDLGVSSPQLDDPER 112 (305)
T ss_pred hcCCCcccEEEEeccCCHhhcCCCCC
Confidence 1 224888875 444556666665
No 173
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.33 E-value=0.00028 Score=51.00 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+.|++.|....++.|+.|||+.+|++. ..+.++|+.|...|++.+.+. .+.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~----~tv~r~l~~L~~~g~l~~~~~----~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSK----STAHRLLNTLQELGYVEQDGQ----NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCeeecCC----CCceeecHH
Confidence 567888876435899999999999987 999999999999999998742 478998774
No 174
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.31 E-value=0.0012 Score=57.30 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=45.9
Q ss_pred CCceEEEeeCCcc---HHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CC--CeEEEEccCCCC---C--C---C---
Q 046375 164 SLKSLVDVAGGIG---GLISEIVKSYPHIKGINFDL-PHVITTAPV----YD--GVTHVSGDMFHT---I--P---N--- 222 (276)
Q Consensus 164 ~~~~vlDvGgG~G---~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~--ri~~~~~d~~~~---~--p---~--- 222 (276)
+..++||||||-= ..=.-..+..|+.+++=+|. |-++..++. .+ +..++.+|+.+| + | +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 6899999999964 22233455679999999999 888888765 33 489999999984 1 2 1
Q ss_pred ---ccEEEEcccccCCCcccc
Q 046375 223 ---ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 ---~D~i~l~~vlh~~~~~~~ 240 (276)
-=.+++.-|||+.+|++.
T Consensus 148 ~~rPVavll~~vLh~v~D~~d 168 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDD 168 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCT
T ss_pred CCCCeeeeeeeeeccCCCccC
Confidence 237899999999998554
No 175
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.30 E-value=0.00051 Score=64.27 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CC-
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IP- 221 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p- 221 (276)
+...++ .....+|||+|||+|..+..+++.. ++.+++.+|+ +..++.+++ ..+|+++.+|..+ + .+
T Consensus 229 ~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 229 VPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence 334444 5567899999999999999999986 5678999999 888877765 3468999999876 2 23
Q ss_pred CccEEEE
Q 046375 222 NADALLL 228 (276)
Q Consensus 222 ~~D~i~l 228 (276)
.||.|++
T Consensus 307 ~fD~Vl~ 313 (431)
T PRK14903 307 TFDRILV 313 (431)
T ss_pred cCCEEEE
Confidence 3999986
No 176
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.001 Score=55.19 Aligned_cols=100 Identities=18% Similarity=0.065 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeE
Q 046375 138 IFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVT 210 (276)
Q Consensus 138 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~ 210 (276)
.+++.|..+....+..+-..+. -+....||+||||+|..-.- -.--|..+++.+|- |.|-+.+.. ..++.
T Consensus 52 ~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 52 IYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 4555565553322222221111 23445689999999986432 22236778999998 666655433 34565
Q ss_pred -EEEccCCC-C-CC--CccEEEEcccccCCCcccc
Q 046375 211 -HVSGDMFH-T-IP--NADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 211 -~~~~d~~~-~-~p--~~D~i~l~~vlh~~~~~~~ 240 (276)
|+.++-.+ | ++ ++|+|++..||....+...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k 163 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVK 163 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCHHH
Confidence 78877776 4 55 3999999999988776544
No 177
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.28 E-value=0.00074 Score=59.34 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCC----CCCeEE--EEccCCC---CCCCccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHI-KGINFDL-PHVITTAPV----YDGVTH--VSGDMFH---TIPNADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l-~~~~~Dl-p~~~~~a~~----~~ri~~--~~~d~~~---~~p~~D~i~l~~vl 232 (276)
.+.+|||+|+|.|.-+-++...+|.+ +++++|. +.+++.++. ...... ...++.. +++..|+|+++|+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46799999999999999999999865 4789998 777776554 111111 0111221 34457999999999
Q ss_pred cCCCcccc------------------c-------cCHHHHHHhHhhCCCCceE
Q 046375 233 HNWSDEAC------------------E-------RTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 233 h~~~~~~~------------------~-------rt~~e~~~ll~~aGf~~~~ 260 (276)
-..++++. | +...+.++.|.+.|+.++.
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 99988433 1 2466666677666766654
No 178
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.28 E-value=0.0017 Score=54.45 Aligned_cols=91 Identities=20% Similarity=0.136 Sum_probs=69.7
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCC-CCC-----CccEEEEcccccCCCcc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFH-TIP-----NADALLLKWVLHNWSDE 238 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~-~~p-----~~D~i~l~~vlh~~~~~ 238 (276)
..++||||+=+...... .++-..++-+||-.. .+ .+...||++ |+| .||+|.++.||-+.|+.
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999987665444 355667899999331 22 237789999 777 29999999999999975
Q ss_pred cc------------------------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 239 AC------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 239 ~~------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
.. --+.+.|..+++.-||..++.+...-
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 54 02789999999999999999877643
No 179
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.25 E-value=0.0006 Score=63.87 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=57.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C---
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--- 219 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--- 219 (276)
..++..++ .....+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+ +
T Consensus 242 ~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 242 QLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 33344455 55678999999999999999999864 468999998 888877655 3569999999876 2
Q ss_pred -C-C-CccEEEE
Q 046375 220 -I-P-NADALLL 228 (276)
Q Consensus 220 -~-p-~~D~i~l 228 (276)
. + .||.|++
T Consensus 320 ~~~~~~fD~Vl~ 331 (434)
T PRK14901 320 PQWRGYFDRILL 331 (434)
T ss_pred ccccccCCEEEE
Confidence 2 2 3999996
No 180
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.22 E-value=0.00018 Score=57.92 Aligned_cols=62 Identities=23% Similarity=0.515 Sum_probs=47.0
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC---CC--C-ccEEEEc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT---IP--N-ADALLLK 229 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~---~p--~-~D~i~l~ 229 (276)
+.|+|+.||.|..++.+++.++ +++.+|+ |..++.++. .+||.++.+|+++- ++ . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 4799999999999999999975 5899998 888877764 67999999999872 22 2 7999874
No 181
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=97.20 E-value=0.00036 Score=60.31 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|...+.++++.|||+++|+|. ..+.|+|..|+..|++.+++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpk----sT~~RlL~tL~~~G~v~~d~~----~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPK----STVHRLLQTLVELGYVEQDPE----DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCH----HHHHHHHHHHHHCCCEEEcCC----CCcEeehHHH
Confidence 467888887434467999999999988 999999999999999999984 4689999853
No 182
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.20 E-value=0.0011 Score=57.91 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CCCccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IPNADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p~~D~i~l 228 (276)
.....+|||+|||+|..+..+++..++ .+++.+|. +..++.+++ ..+|+++..|... + .+.+|+|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 445689999999999999999998754 58999998 888876654 3568899888755 2 235999986
No 183
>PLN02476 O-methyltransferase
Probab=97.19 E-value=0.00062 Score=59.68 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=54.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------CCc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------PNA 223 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p~~ 223 (276)
..++++|||||+++|+.++.+++..| +.+++.+|. |+.++.+++ .++|+++.||..+ + + +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999875 667899998 777777765 5799999999876 1 2 238
Q ss_pred cEEEE
Q 046375 224 DALLL 228 (276)
Q Consensus 224 D~i~l 228 (276)
|+|++
T Consensus 196 D~VFI 200 (278)
T PLN02476 196 DFAFV 200 (278)
T ss_pred CEEEE
Confidence 88765
No 184
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0014 Score=56.17 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHhhhhhh----HHHHHhccccCCCCCceEEEeeCCccHHHHHHHH-HCCCCeEEEeec-hHHHhhCCC-------CCCe
Q 046375 143 MACNAKFL----TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVK-SYPHIKGINFDL-PHVITTAPV-------YDGV 209 (276)
Q Consensus 143 m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~l~~~~~Dl-p~~~~~a~~-------~~ri 209 (276)
|...++.. +-.++...+ .....+|+|.|.|+|.++..|+. -.|.-+++.+|. ++..+.|++ .++|
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v 148 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV 148 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence 55554433 335666666 78899999999999999999997 568889999997 888877765 5779
Q ss_pred EEEEccCCCC-CC-CccEEEE
Q 046375 210 THVSGDMFHT-IP-NADALLL 228 (276)
Q Consensus 210 ~~~~~d~~~~-~p-~~D~i~l 228 (276)
++..+|+.+. .+ .+|++++
T Consensus 149 ~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 149 TLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred EEEeccccccccccccCEEEE
Confidence 9999999984 34 4998876
No 185
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.17 E-value=0.00088 Score=60.01 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCC-------------CCCeEEEEccCCCCCC----Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHI-KGINFDL-PHVITTAPV-------------YDGVTHVSGDMFHTIP----NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l-~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~d~~~~~p----~~ 223 (276)
++..+++-+|||.|.-++++++ ||+. +++.+|+ |.|++.++. ..|++++.-|.++-+. .+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4678999999999999999887 7965 5899999 999998873 5799999999988322 37
Q ss_pred cEEEEcccccCCCcccc-----------------------------------ccCHHHHHHhHhhCCCCceEEEe---cC
Q 046375 224 DALLLKWVLHNWSDEAC-----------------------------------ERTELEWKNIPEKGGSPRYRIIK---IP 265 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~-----------------------------------~rt~~e~~~ll~~aGf~~~~~~~---~~ 265 (276)
|.++. |++|... .+..-.+.+-+++|||.+.-.+. .-
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTF 441 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTF 441 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcc
Confidence 77654 5666554 01222335667888988766543 33
Q ss_pred CccEEEEEecC
Q 046375 266 ALQCIIESYPE 276 (276)
Q Consensus 266 ~~~~vi~a~~~ 276 (276)
|..+.+.|.|+
T Consensus 442 GeWGf~l~~~~ 452 (508)
T COG4262 442 GEWGFILAAPG 452 (508)
T ss_pred cccceeecccc
Confidence 55777777664
No 186
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=97.15 E-value=0.0004 Score=60.03 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|.....|.|+.|||+.+|+|. ..+.|+|..|+..|+|.+++ ++|++++..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglpk----sT~~RlL~tL~~~G~l~~~~------~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLTR----AAARRFLLTLVELGYVTSDG------RLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeCC------CEEEecHHH
Confidence 567778875447899999999999988 99999999999999999865 899998853
No 187
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.15 E-value=0.00035 Score=59.17 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEE--ccCCC----CC---C-CccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVS--GDMFH----TI---P-NADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~--~d~~~----~~---p-~~D~i~l~~vl 232 (276)
..+.++|||||+|.-++.+++.|. ++++.|. +.+++.+++..+++... --+.+ ++ + +.|+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 445999999999966666666654 5799998 99999998854444333 23332 22 3 39999999999
Q ss_pred cCCCcccc
Q 046375 233 HNWSDEAC 240 (276)
Q Consensus 233 h~~~~~~~ 240 (276)
|.++-+..
T Consensus 111 HWFdle~f 118 (261)
T KOG3010|consen 111 HWFDLERF 118 (261)
T ss_pred HhhchHHH
Confidence 99987664
No 188
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.15 E-value=0.0026 Score=57.07 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCC--C-CccEEEEccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTI--P-NADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~--p-~~D~i~l~~v 231 (276)
+....++|||||++|.++-.++++ +.+++.+|.-.+.+.....+||++..+|-+.-. + .+|++++=.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 346789999999999999999998 569999998777777777899999999988732 3 3888876554
No 189
>PRK00536 speE spermidine synthase; Provisional
Probab=97.15 E-value=0.001 Score=57.84 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCCCC-CCccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFHTI-PNADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~~~-p~~D~i~l~ 229 (276)
+.+++||=||||.|..++++++. |. +++.+|+ +.|++.+++ .+|++++.. +.+.- ..+|+|+.=
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 57899999999999999999985 65 9999999 888887776 679998872 22222 249999864
No 190
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.13 E-value=0.0017 Score=55.82 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC-CccEEEEcccccCCCccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP-NADALLLKWVLHNWSDEA 239 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p-~~D~i~l~~vlh~~~~~~ 239 (276)
+..++||||+|.|..+..++..+.+ +.+-+. +.|....++ ..++.+..|-+..-+ .+|+|.|-|+|....+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHH
Confidence 4678999999999999999999887 566676 777666654 334555544343333 499999999995544433
No 191
>PRK11569 transcriptional repressor IclR; Provisional
Probab=97.12 E-value=0.0005 Score=60.40 Aligned_cols=58 Identities=12% Similarity=0.264 Sum_probs=49.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|.+...+.|+.|||+.+|++. ..+.|+|..|+..|+|.+++. .++|++++..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpk----sTv~RlL~tL~~~G~l~~~~~----~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPN----STTHRLLTTMQQQGFVRQVGE----LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEcCC----CCeEecCHHH
Confidence 567778876547899999999999987 999999999999999998763 5899998753
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.12 E-value=0.0006 Score=67.63 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=52.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C-CCeEEEEccCCCC---CC-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------Y-DGVTHVSGDMFHT---IP-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~d~~~~---~p-~~D~i~l 228 (276)
+.++|||+|||+|.++..+++. ...+++.+|. +.+++.+++ . ++++++.+|.++. .+ .||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4689999999999999999986 3346999999 888887765 2 5899999998772 33 4999998
No 193
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=97.09 E-value=0.00058 Score=59.91 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=49.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-+.|++.|...+.+.|+.|||+.+|+|. ..+.|+|..|+..|+|.+++. .++|+++..
T Consensus 27 ~l~IL~~~~~~~~~~tl~eIa~~lglpk----Stv~RlL~tL~~~G~l~~~~~----~~~Y~lG~~ 84 (271)
T PRK10163 27 GIAILQYLEKSGGSSSVSDISLNLDLPL----STTFRLLKVLQAADFVYQDSQ----LGWWHIGLG 84 (271)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEcCC----CCeEEecHH
Confidence 3567888876546799999999999987 999999999999999999763 588999884
No 194
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.07 E-value=0.00092 Score=52.36 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=44.0
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
+++|||||.|.++..+++.+|..+++.+|. |.+.+.+++ ..+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 888876654 2458888877665
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.06 E-value=0.002 Score=51.67 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=68.2
Q ss_pred hHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC------CC
Q 046375 150 LTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH------TI 220 (276)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~------~~ 220 (276)
.++..++.++ +....-|+++|.|+|.++.+++++. ++-..+.++. |+.....++ .+.++++.||.++ ..
T Consensus 36 lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 3455566677 7788899999999999999987764 6667888887 887777766 6667789999886 23
Q ss_pred CC--ccEEEEcccccCCCcccc
Q 046375 221 PN--ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 221 p~--~D~i~l~~vlh~~~~~~~ 240 (276)
++ +|.|++.-=+-.+|....
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~ 135 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRR 135 (194)
T ss_pred CCCeeeeEEeccccccCcHHHH
Confidence 43 999998877777766544
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.06 E-value=0.00075 Score=53.18 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCCC-CCC-CccE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKS----YPHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMFH-TIP-NADA 225 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~-~~p-~~D~ 225 (276)
..+..+|+|+|||.|+++..|+.. .|+++++++|. +..++.+.. ..++++..+++.+ +.. ..++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 457899999999999999999992 38899999998 666555443 3567777776654 222 3555
Q ss_pred EEEccc
Q 046375 226 LLLKWV 231 (276)
Q Consensus 226 i~l~~v 231 (276)
++--|.
T Consensus 103 ~vgLHa 108 (141)
T PF13679_consen 103 LVGLHA 108 (141)
T ss_pred EEEeec
Confidence 554443
No 197
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.00098 Score=52.18 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC--C-ccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIK-GINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP--N-ADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~-~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p--~-~D~i~l~~ 230 (276)
..+++.|+|||.|-++.+ -.+|..+ ++++|+ |+.++..++ .=++.+++.|+.++.+ + +|..+++-
T Consensus 48 Egkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 468999999999999944 4455554 899999 999988776 3467889999988543 3 88887754
No 198
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.04 E-value=0.00077 Score=62.28 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C-CCeEEEEccCCCC---C---C-CccEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------Y-DGVTHVSGDMFHT---I---P-NADALL 227 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~d~~~~---~---p-~~D~i~ 227 (276)
+.++|||+|||+|.++..++.. ...+++.+|+ +.+++.+++ . ++++++.+|+++. + . .||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999999876653 3458999998 888887765 2 4799999999872 2 2 399998
Q ss_pred Ec
Q 046375 228 LK 229 (276)
Q Consensus 228 l~ 229 (276)
+.
T Consensus 299 lD 300 (396)
T PRK15128 299 MD 300 (396)
T ss_pred EC
Confidence 64
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.02 E-value=0.00084 Score=58.06 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=53.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC---C-CC-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH---T-IP-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~-~p-~~D~i 226 (276)
+++++||=||||.|..+..+++..|..+++++|+ |.|++.+++ .+|++++.+|... . .. .+|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4789999999999999999997766778999999 999988765 4799999999865 3 33 59999
Q ss_pred EE
Q 046375 227 LL 228 (276)
Q Consensus 227 ~l 228 (276)
++
T Consensus 155 i~ 156 (246)
T PF01564_consen 155 IV 156 (246)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 200
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=97.02 E-value=0.00069 Score=58.93 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=48.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|... ++.|+.|||+.+|+|. ..+.|+|+.|+..|+|.+++. +++|++++..
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~k----stv~Rll~tL~~~G~l~~~~~----~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMSK----STVYRFLQTMKTLGYVAQEGE----SEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEcCC----CCcEEecHHH
Confidence 4567777765 6899999999999988 999999999999999999753 5889999853
No 201
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.01 E-value=0.00065 Score=61.89 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=43.7
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
.++||+|||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998863 7999998 888887776 3479999999865
No 202
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.00099 Score=56.12 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=70.3
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec----hHHHhhCCC---CCCeEEEEccCCC--CCCC-ccEEEEcccc--
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL----PHVITTAPV---YDGVTHVSGDMFH--TIPN-ADALLLKWVL-- 232 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl----p~~~~~a~~---~~ri~~~~~d~~~--~~p~-~D~i~l~~vl-- 232 (276)
..+++|||.|.|.=++.++=.+|+++++++|. -..++.+.. .++++++.+.+.+ +.+. ||+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L 147 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASL 147 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccch
Confidence 68999999999999999999999999999996 344444443 6789999998876 2345 9999876542
Q ss_pred -------cCCCcc-cc------cc---CHHHHHHhHhhCCCCceEEEec
Q 046375 233 -------HNWSDE-AC------ER---TELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 233 -------h~~~~~-~~------~r---t~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+.|... .. .. -..+.+......|+.+..+...
T Consensus 148 ~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 148 NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 111111 00 11 2445566677778888887655
No 203
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0015 Score=55.17 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEE-ccCCC---CC--CCccEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVS-GDMFH---TI--PNADAL 226 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~-~d~~~---~~--p~~D~i 226 (276)
.++++++|+||.+.|+-++.++...| +.+.+.+|+ |+.++.|++ .++|+.+. ||..+ .. +.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56799999999999999999999999 888999999 888888876 67888888 57765 22 348988
Q ss_pred EE
Q 046375 227 LL 228 (276)
Q Consensus 227 ~l 228 (276)
++
T Consensus 137 FI 138 (219)
T COG4122 137 FI 138 (219)
T ss_pred EE
Confidence 76
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.011 Score=48.09 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=75.7
Q ss_pred CceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCC--CCccEEEEcccccCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTI--PNADALLLKWVLHNW 235 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~--p~~D~i~l~~vlh~~ 235 (276)
+.-+++||||+|..+..|.+.. |+......|+ |..++...+ ..++..+..|+++.+ .+.|+++++-=.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6889999999999998888765 7778899999 888776443 456778888998843 348988875422112
Q ss_pred Ccccc------------------------------------------ccCHHHHHHhHhhCCCCceEEEec--CC-ccEE
Q 046375 236 SDEAC------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI--PA-LQCI 270 (276)
Q Consensus 236 ~~~~~------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~v 270 (276)
++++. .-..+|+-+.++.-||........ ++ ..++
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~i 203 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAGGETLSI 203 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecCCceEEE
Confidence 22222 115888988999999987665333 33 4555
Q ss_pred EEE
Q 046375 271 IES 273 (276)
Q Consensus 271 i~a 273 (276)
+..
T Consensus 204 lkf 206 (209)
T KOG3191|consen 204 LKF 206 (209)
T ss_pred EEE
Confidence 544
No 205
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0015 Score=54.33 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhCCC----------------CCCeEEEE
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY--PHIKGINFDL-PHVITTAPV----------------YDGVTHVS 213 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~l~~~~~Dl-p~~~~~a~~----------------~~ri~~~~ 213 (276)
.+++.++..+....++||||+|+|+++..+.... |....+++|+ |++++..++ ..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3344444346678999999999999998887554 3333488997 998876543 46899999
Q ss_pred ccCCCC---CCCccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 214 GDMFHT---IPNADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 214 ~d~~~~---~p~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
||-..- ...+|.|.+.-- +....+++.+.|...|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGG 187 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCC
Confidence 999873 334999988732 2334677777777665
No 206
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.90 E-value=0.0008 Score=61.53 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=43.3
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
.++||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998864 7899998 888877765 3489999999865
No 207
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.83 E-value=0.0012 Score=57.55 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=50.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
-+.|++.|...+++.|..|||+.+|++. ..+.|+|+.|...|+|.++.. +++|++++...
T Consensus 13 al~iL~~l~~~~~~ls~~eia~~lgl~k----stv~RlL~tL~~~g~v~~~~~----~~~Y~Lg~~~~ 72 (263)
T PRK09834 13 GLMVLRALNRLDGGATVGLLAELTGLHR----TTVRRLLETLQEEGYVRRSAS----DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEecC----CCcEEEcHHHH
Confidence 3557777766545799999999999987 999999999999999999852 47899998543
No 208
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.81 E-value=0.0022 Score=52.66 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhhCCC-------CCCeEEEEcc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIK---------GINFDL-PHVITTAPV-------YDGVTHVSGD 215 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~---------~~~~Dl-p~~~~~a~~-------~~ri~~~~~d 215 (276)
.++.... +.+...|+|-=||+|.++++.+...++.. +++.|. +.+++.+++ .+.|.+...|
T Consensus 19 ~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 19 ALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 3444444 56778999999999999999988888877 899998 888877665 5679999999
Q ss_pred CCC-CCC-C-ccEEEEc
Q 046375 216 MFH-TIP-N-ADALLLK 229 (276)
Q Consensus 216 ~~~-~~p-~-~D~i~l~ 229 (276)
+.+ +++ + +|+|+..
T Consensus 97 ~~~l~~~~~~~d~Ivtn 113 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTN 113 (179)
T ss_dssp GGGGGGTTSBSCEEEEE
T ss_pred hhhcccccCCCCEEEEC
Confidence 998 633 3 8887753
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.78 E-value=0.0021 Score=61.38 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=50.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCC-----CCCeEEEEccCCC---CCCC--ccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL--PHVITTAPV-----YDGVTHVSGDMFH---TIPN--ADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl--p~~~~~a~~-----~~ri~~~~~d~~~---~~p~--~D~i~l~ 229 (276)
....+||||||.|.++..+++++|+..++++|. +.+...++. ..++.++.+|+.. -+|. .|.|++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 467899999999999999999999999999997 554444333 4578888887632 3552 6666554
No 210
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.77 E-value=0.0015 Score=54.23 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=49.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C--C-C-ccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I--P-N-ADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~--p-~-~D~i~l 228 (276)
...+|||++||+|.++..++.+... +++.+|. +..++.+++ .++++++.+|.++ . + + . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999999764 7999998 777766654 3589999999965 1 2 1 2 677665
No 211
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.77 E-value=0.00056 Score=45.74 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=44.0
Q ss_pred hHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 4 LKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 4 l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|.--.++.|+..|... +|.|+.|||+.+|+++ ..+.+.|+.|...|+++...
T Consensus 7 L~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~----~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 7 LSDPTRLRILRLLASN-GPMTVSELAEELGISQ----STVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEEE
T ss_pred hCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEEec
Confidence 3344678899999443 8999999999999987 89999999999999999876
No 212
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.76 E-value=0.0037 Score=51.60 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=49.4
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCeEEEeec----hHHHhhCCC---CCCeEEEEccCCC-CCC-CccEEEEccc
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIKGINFDL----PHVITTAPV---YDGVTHVSGDMFH-TIP-NADALLLKWV 231 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl----p~~~~~a~~---~~ri~~~~~d~~~-~~p-~~D~i~l~~v 231 (276)
+++|||.|.|.=++.++=.+|+++++.+|. -..+..+.. .++++++.+++.+ ..+ .||+++++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence 899999999999999999999999999996 223333332 5689999998887 333 4999988765
No 213
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.75 E-value=0.00036 Score=47.71 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..++..|-.. ++.|++|||+.+|++. ..+.+.|+-|...|++.+.+
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~----~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISR----STVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEc
Confidence 355667777543 8999999999999977 99999999999999999987
No 214
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.70 E-value=0.00087 Score=42.33 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=38.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA 58 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~ 58 (276)
++.|...|.+ +|.++.||++.+|+++ ..+.+.|+.|...|++..
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~----~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQ----STVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccc----hHHHHHHHHHHHCcCeeC
Confidence 4567788887 8999999999999977 999999999999999873
No 215
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.65 E-value=0.0028 Score=39.72 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=37.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
-+.|..+||+.+|+++ ..+.+.|+.|...|++.... +.|.++
T Consensus 7 ~~~s~~~la~~l~~s~----~tv~~~l~~L~~~g~l~~~~------~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGLTR----ETVSRTLKRLEKEGLISREG------GRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEeC------CEEEEC
Confidence 3689999999999977 89999999999999999876 777764
No 216
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.65 E-value=0.0029 Score=54.71 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C-------CC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I-------PN 222 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~-------p~ 222 (276)
..+++++|+||.+.|+-+..+++.. |+.+++.+|. |+..+.|++ .++|+++.||..+ + + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3468999999999999999999887 4778999998 777777665 6899999998876 2 1 24
Q ss_pred ccEEEE
Q 046375 223 ADALLL 228 (276)
Q Consensus 223 ~D~i~l 228 (276)
||+|++
T Consensus 157 fD~iFi 162 (247)
T PLN02589 157 FDFIFV 162 (247)
T ss_pred ccEEEe
Confidence 787765
No 217
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.64 E-value=0.0031 Score=52.68 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCC-C-CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTI-P-NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~-p-~~D~i~l~~v 231 (276)
....+|+|+-||.|.|+..+++..+..+++..|+ |..++.+++ .++|..+.+|..+-. . .+|-|+|+.-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 4678999999999999999999888888999999 888876654 688999999988732 3 3998888653
No 218
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.62 E-value=0.0083 Score=51.80 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=69.2
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p- 221 (276)
.++..++ .....+||+-|.|+|.++..|++. .|.-++.-+|. ++.++.|++ .++|++...|+-+ -++
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4566666 778899999999999999999975 48899999998 777777765 5789999999965 232
Q ss_pred ----CccEEEEcccccCCCcccc-------------------ccCHHHH---HHhHhhCCCCceEEEe
Q 046375 222 ----NADALLLKWVLHNWSDEAC-------------------ERTELEW---KNIPEKGGSPRYRIIK 263 (276)
Q Consensus 222 ----~~D~i~l~~vlh~~~~~~~-------------------~rt~~e~---~~ll~~aGf~~~~~~~ 263 (276)
.+|.|++ |+++.-. -.+.++. -+.|++.||..+++..
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 3898876 3333221 1344444 3445667998877643
No 219
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.62 E-value=0.0087 Score=54.01 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------
Q 046375 136 NKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------- 205 (276)
Q Consensus 136 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------- 205 (276)
.+.|+.++... .+...+..... -....+|||+|||.|.-+..-....+ ..++++|+ +..++.+++
T Consensus 38 lR~fNNwvKs~---LI~~~~~~~~~-~~~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~ 112 (331)
T PF03291_consen 38 LRNFNNWVKSV---LIQKYAKKVKQ-NRPGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRN 112 (331)
T ss_dssp HHHHHHHHHHH---HHHHHCHCCCC-TTTT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTST
T ss_pred HHHHhHHHHHH---HHHHHHHhhhc-cCCCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhcccc
Confidence 46788887642 23333343321 12678999999999998888877643 36899999 666665543
Q ss_pred -------CCCeEEEEccCCCC-----C--C--CccEEEEcccccCC-Cccc
Q 046375 206 -------YDGVTHVSGDMFHT-----I--P--NADALLLKWVLHNW-SDEA 239 (276)
Q Consensus 206 -------~~ri~~~~~d~~~~-----~--p--~~D~i~l~~vlh~~-~~~~ 239 (276)
.-...|+.+|.+.. + + .+|+|-+-..||+. ..++
T Consensus 113 ~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~ 163 (331)
T PF03291_consen 113 NSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEE 163 (331)
T ss_dssp T-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHH
T ss_pred ccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHH
Confidence 12457788888751 2 2 39999999999984 4444
No 220
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0016 Score=56.53 Aligned_cols=98 Identities=22% Similarity=0.203 Sum_probs=77.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEEcccccCCCcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSDE 238 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~~ 238 (276)
+....++|+|||.|.++.. +|.+..++.|+ -..+..++..+.......|+.+ |.+ .+|..+..-|+|+++-.
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3578899999999988753 48889999999 6677777764443566678887 665 49999999999999876
Q ss_pred cc-ccCHHHHHHhHhhCCCCceEEEec
Q 046375 239 AC-ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 239 ~~-~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
.. ++..+|+.+.++.-|...+-+...
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 65 778889999999988877666544
No 221
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.57 E-value=0.0037 Score=52.72 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCC--eEEEEccCCC-CCC--CccEEEEcccccCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDG--VTHVSGDMFH-TIP--NADALLLKWVLHNW 235 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~r--i~~~~~d~~~-~~p--~~D~i~l~~vlh~~ 235 (276)
.+..++|||||-|+....|..+.- -+.+..|. ..|++.++. .+. .+...+|-.. ++. ++|+++.+.-+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 467899999999999999999862 25688897 778887776 233 3445566544 565 39999999999877
Q ss_pred Cccc-c------------------------------------cc------------CHHHHHHhHhhCCCCceEE
Q 046375 236 SDEA-C------------------------------------ER------------TELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 236 ~~~~-~------------------------------------~r------------t~~e~~~ll~~aGf~~~~~ 261 (276)
++-. + || ...++..||..|||....+
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 7633 2 12 3678899999999998665
No 222
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.57 E-value=0.011 Score=48.82 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=67.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCCCccEEEEcccccCC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIPNADALLLKWVLHNW 235 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~ 235 (276)
+-+.++|||.|.|+|..+++.++..- ..++.-|. |...+.++- .-.|.+...|..-+-|.+|+++++.++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 55789999999999999999888742 34566666 554444432 345677777776644569999999998877
Q ss_pred CccccccCHHHHHHhHhhCCCCce
Q 046375 236 SDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 236 ~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
+ .+.|... |...++.+|-.++
T Consensus 156 ~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 156 T--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred h--HHHHHHH-HHHHHHhCCCEEE
Confidence 4 4445555 8888888886655
No 223
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.55 E-value=0.022 Score=51.08 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC----CCeEEEeec-hHHHhhC----C-C-CCCeEE--EEccCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP----HIKGINFDL-PHVITTA----P-V-YDGVTH--VSGDMF 217 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p----~l~~~~~Dl-p~~~~~a----~-~-~~ri~~--~~~d~~ 217 (276)
++.++..+. ....+||+|||+|.=...|++... ..+++.+|+ .+.++.+ . . .+.|++ +.+||.
T Consensus 67 ~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345566544 556899999999998887777663 467999998 4455433 3 1 345555 788996
Q ss_pred CC---C-----C-Cc-cEEEEcccccCCCcccc
Q 046375 218 HT---I-----P-NA-DALLLKWVLHNWSDEAC 240 (276)
Q Consensus 218 ~~---~-----p-~~-D~i~l~~vlh~~~~~~~ 240 (276)
++ + + .. -++++...+.+++++++
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea 175 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEA 175 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHH
Confidence 62 2 1 13 45567889999998776
No 224
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.50 E-value=0.0019 Score=43.85 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=42.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSS 75 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~ 75 (276)
++-+...|....++.+..+||+.++++. ..+.+.++.|...|+|++.....++ ...|++|+.+
T Consensus 5 q~~vL~~l~~~~~~~t~~~l~~~~~~~~----~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 5 QWQVLRALAHSDGPMTQSDLAERLGISK----STVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHHT--TS-BEHHHHHHHTT--H----HHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHHHccCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3445566662238999999999999965 8999999999999999877521111 1358888753
No 225
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.46 E-value=0.0022 Score=40.51 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCcee
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFA 57 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~ 57 (276)
.+..|+..|.++ +++|..|||+.+|++. ..+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~----~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISR----STVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-H----HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCcCcC
Confidence 356788899886 6799999999999976 99999999999999985
No 226
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.39 E-value=0.0033 Score=47.87 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=49.5
Q ss_pred hHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 4 LKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 4 l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
|.--.++.|+..|... ++.++.||++.+++++ +.+.+.|+.|...|+|..... |..-.|++++
T Consensus 13 LadptRl~IL~~L~~~-~~~~v~ela~~l~lsq----stvS~HL~~L~~AGLV~~~r~--Gr~~~Y~l~~ 75 (117)
T PRK10141 13 LSDETRLGIVLLLRES-GELCVCDLCTALDQSQ----PKISRHLALLRESGLLLDRKQ--GKWVHYRLSP 75 (117)
T ss_pred hCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEEEEE--cCEEEEEECc
Confidence 3344678899999754 6899999999999988 999999999999999988872 1112366654
No 227
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=96.33 E-value=0.0071 Score=48.96 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=40.4
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|+++||+.+++|+ ..+.++|..|...|+|.... |..|.|.+..-
T Consensus 24 ~~vs~~eIA~~~~ip~----~~l~kIl~~L~~aGLv~s~r---G~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGISL----SYLEQLFSRLRKNGLVSSVR---GPGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeCC---CCCCCeeccCC
Confidence 6899999999999998 99999999999999999764 12567888663
No 228
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.31 E-value=0.0071 Score=43.04 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=39.0
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
++.|.+|||+.+++++ ..+.+++..|...|+++.... -.|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i~~----~~l~kil~~L~~~Gli~s~~G---~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGISP----SYLRKILQKLKKAGLIESSRG---RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEETS---TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHhhCCeeEecCC---CCCceeecCCH
Confidence 4699999999999988 999999999999999987751 24789887743
No 229
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.30 E-value=0.0024 Score=52.80 Aligned_cols=55 Identities=15% Similarity=0.367 Sum_probs=40.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhC-------CC------CCCeEEEEccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTA-------PV------YDGVTHVSGDMFH 218 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a-------~~------~~ri~~~~~d~~~ 218 (276)
+...++|||||-|.++..|...||+.-.+++++ -.|.+-. +. ..+|.+.-.+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 446799999999999999999999999999987 3343322 21 3456666665554
No 230
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.30 E-value=0.0031 Score=54.01 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP--NADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~ 234 (276)
+.+.+|+|||||-==++.......|++++++.|+ +..++.... ..+.+....|.....| .+|+.++--++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999999999999999999999 777666554 5677788889998544 3999999999988
Q ss_pred CCcccc
Q 046375 235 WSDEAC 240 (276)
Q Consensus 235 ~~~~~~ 240 (276)
....+.
T Consensus 184 le~q~~ 189 (251)
T PF07091_consen 184 LERQRR 189 (251)
T ss_dssp HHHHST
T ss_pred HHHHhc
Confidence 755444
No 231
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.30 E-value=0.0065 Score=40.92 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.++|..|||+.+|+++ ..+.++|+.|...|++...+ .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~s~----~tv~r~l~~L~~~g~i~~~~-----~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTR----ETVSRTLKELEEEGLISRRG-----RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecC-----CCeEEeCC
Confidence 6899999999999977 99999999999999999876 37888764
No 232
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=96.23 E-value=0.0032 Score=43.22 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=37.2
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|-+.|... +.+|..|||..++++| ..++.+|+.|+.+|.+.+..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~----~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISP----EAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--H----HHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEec
Confidence 55677776 7899999999999988 99999999999999999887
No 233
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.22 E-value=0.0074 Score=55.55 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=51.1
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C-CCCccEEEEc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T-IPNADALLLK 229 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~-~p~~D~i~l~ 229 (276)
..+|+|++||+|.++++++.+.+..++++.|. |..++.+++ .+.+++..+|... + .+.+|+|++-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 46899999999999999999887668999998 888877765 3456688888755 2 2248988773
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.15 E-value=0.0096 Score=48.78 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=52.1
Q ss_pred ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCCccEEEEcc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPNADALLLKW 230 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~~D~i~l~~ 230 (276)
..+.|+|.|+|-++.-.+++ --+++.++. |.....+++ ..+++++.||..+ .+..+|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHH
Confidence 67899999999999888877 447899998 877777765 5789999999998 786799987644
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.11 E-value=0.013 Score=49.19 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=78.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEEc---
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP---NADALLLK--- 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p---~~D~i~l~--- 229 (276)
+..++.||||-++++.+.+++.+|..+++..|. |+-++.+.. .+||+...+|-+.++. +.|+++..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 455699999999999999999999999999998 666655533 7899999999988653 37777542
Q ss_pred -----ccccCCCcccc---------ccCHHHHHHhHhhCCCCceEEEec--CC-ccEEEEEec
Q 046375 230 -----WVLHNWSDEAC---------ERTELEWKNIPEKGGSPRYRIIKI--PA-LQCIIESYP 275 (276)
Q Consensus 230 -----~vlh~~~~~~~---------~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~vi~a~~ 275 (276)
.+|-.-.+.-. .-...++++||...+|..+.-.=. .+ .+-+|.+.+
T Consensus 96 G~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~ 158 (226)
T COG2384 96 GTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEILVVEK 158 (226)
T ss_pred HHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEec
Confidence 33311111000 125788899999999997664333 23 466666544
No 236
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.09 E-value=0.0057 Score=42.97 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=41.3
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRW 77 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~ 77 (276)
|...+.. ++.+..+|+..++++. ..+.+.|+.|...|++...+ +.|.+|+.|.-
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L~~----~~~~~yL~~L~~~gLI~~~~------~~Y~lTekG~~ 64 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANLNY----STLKKYLKELEEKGLIKKKD------GKYRLTEKGKE 64 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST--H----HHHHHHHHHHHHTTSEEEET------TEEEE-HHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCcCH----HHHHHHHHHHHHCcCeeCCC------CEEEECccHHH
Confidence 3444543 7999999999999977 99999999999999998765 89999998863
No 237
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=96.09 E-value=0.0093 Score=39.28 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=40.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|.+.|... +.+|++|||+.+|+++ .-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~VS~----~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGVSE----MTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEc
Confidence 367778776 7999999999999988 99999999999999999988
No 238
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.05 E-value=0.0023 Score=45.36 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=47.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC--eEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP--LYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~--~y~~t~~~~ 76 (276)
++++|...|... +.++..+|.+.+|++. ..+.+.|+.|...|+++......++.. .|++|+.++
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~----g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTD----GNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--H----HHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCH----HHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 467788888765 6899999999999987 999999999999999998864322211 388888765
No 239
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.05 E-value=0.02 Score=56.94 Aligned_cols=77 Identities=22% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHhccccCC-CCCceEEEeeCCccHHHHHHHHHC------------------------------------------C
Q 046375 151 TREILAGYKHGF-DSLKSLVDVAGGIGGLISEIVKSY------------------------------------------P 187 (276)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p 187 (276)
+..++.... | .+...++|-+||+|.++++.+... +
T Consensus 178 Aaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 178 AAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 445555555 5 456899999999999998876531 1
Q ss_pred CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC----CccEEEEc
Q 046375 188 HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP----NADALLLK 229 (276)
Q Consensus 188 ~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p----~~D~i~l~ 229 (276)
..+++++|+ |.+++.++. .++|.+..+|+.+ +.+ .+|+|+++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 236899998 888887765 5679999999987 322 38987764
No 240
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.00 E-value=0.013 Score=49.71 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCC---CCCC--ccEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFH---TIPN--ADALL 227 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~---~~p~--~D~i~ 227 (276)
..+..+|||.+.|-|+.+++.+++.- .+++-++- |.|++.+.- ..+|+++.||..+ .+++ +|+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI- 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI- 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE-
Confidence 45789999999999999999999842 26666775 888887754 4578999999987 4663 8875
Q ss_pred EcccccCCCcccc----------------------------c--------cCHHHHHHhHhhCCCCceEEEec
Q 046375 228 LKWVLHNWSDEAC----------------------------E--------RTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 228 l~~vlh~~~~~~~----------------------------~--------rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+||-|.=.. . --.....+.|+++||.+++....
T Consensus 210 ----iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 210 ----IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred ----eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 566554222 0 13788999999999998877654
No 241
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.96 E-value=0.0055 Score=57.32 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=48.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEe---ec-hHHHhhCCCCCCeEEEEccCC-C--CCCC--ccEEEEccccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINF---DL-PHVITTAPVYDGVTHVSGDMF-H--TIPN--ADALLLKWVLH 233 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~---Dl-p~~~~~a~~~~ri~~~~~d~~-~--~~p~--~D~i~l~~vlh 233 (276)
....++||||||.|.|+..++++. +..+-+ |- +..++.|-+ ..|-.+.+-+- + |+|+ ||++.+++++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 345789999999999999999984 322222 22 233333322 11333333332 2 7884 99999999999
Q ss_pred CCCcccc
Q 046375 234 NWSDEAC 240 (276)
Q Consensus 234 ~~~~~~~ 240 (276)
.|.+.+-
T Consensus 193 ~W~~~~g 199 (506)
T PF03141_consen 193 PWHPNDG 199 (506)
T ss_pred cchhccc
Confidence 9987764
No 242
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.042 Score=45.87 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred hhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeechHHHhhCCCCCCeEEEEccCCC
Q 046375 147 AKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDLPHVITTAPVYDGVTHVSGDMFH 218 (276)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~ 218 (276)
+.....++.+.+. .+.+..+|+|+|+-.|.++..+++.... .+++++|+.++-.. ..|.++.+||+.
T Consensus 29 Aa~KL~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~ 96 (205)
T COG0293 29 AAYKLLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITD 96 (205)
T ss_pred HHHHHHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccC
Confidence 3334556677764 4678899999999999999988887644 45899998554433 239999999987
No 243
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.92 E-value=0.0086 Score=40.11 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=38.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|.+.|....+|.+..|||+.+|++. ..++++|..|...|.+.+.+
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gls~----~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGLSI----YQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-H----HHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 56777776238999999999999965 89999999999999999765
No 244
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.92 E-value=0.011 Score=46.55 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=46.0
Q ss_pred hhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 14 DIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 14 ~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
..+... ++.++.+||+.+++++ ..+.+.++.|...|++.+.. .+.|++|+.+..+.
T Consensus 15 ~l~~~~-~~~~~~ela~~l~vs~----~svs~~l~~L~~~Gli~~~~-----~~~i~LT~~G~~~a 70 (142)
T PRK03902 15 LLIEEK-GYARVSDIAEALSVHP----SSVTKMVQKLDKDEYLIYEK-----YRGLVLTPKGKKIG 70 (142)
T ss_pred HHHhcC-CCcCHHHHHHHhCCCh----hHHHHHHHHHHHCCCEEEec-----CceEEECHHHHHHH
Confidence 344443 7899999999999987 99999999999999999765 37799999876433
No 245
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.91 E-value=0.011 Score=42.88 Aligned_cols=64 Identities=20% Similarity=0.371 Sum_probs=48.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~ 76 (276)
.++.++..|... ++.|..+||+.+++++ ..+.+.++-|...|+|.+.....+. ...|.+|+.+.
T Consensus 11 ~~~~il~~l~~~-~~~~~~~la~~~~~s~----~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~ 75 (101)
T smart00347 11 TQFLVLRILYEE-GPLSVSELAKRLGVSP----STVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGR 75 (101)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHH
Confidence 356788888765 6799999999999987 8999999999999999987521000 11466666554
No 246
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.82 E-value=0.021 Score=50.86 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=61.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC------
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH------ 218 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~------ 218 (276)
..++++.+. ......+||.=-|.|.++.++++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHH
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHH
Confidence 456777776 66778999999999999999999999999999999 999877655 6899999999976
Q ss_pred CC---CCccEEEE--cccccCCCcccc
Q 046375 219 TI---PNADALLL--KWVLHNWSDEAC 240 (276)
Q Consensus 219 ~~---p~~D~i~l--~~vlh~~~~~~~ 240 (276)
.. +.+|-|++ .--.|.+++.++
T Consensus 87 ~~~~~~~~dgiL~DLGvSS~Qld~~~R 113 (310)
T PF01795_consen 87 ELNGINKVDGILFDLGVSSMQLDDPER 113 (310)
T ss_dssp HTTTTS-EEEEEEE-S--HHHHHTGGG
T ss_pred HccCCCccCEEEEccccCHHHhCCCCC
Confidence 13 24777764 334445555554
No 247
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=95.81 E-value=0.013 Score=37.95 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=34.5
Q ss_pred hHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHH
Q 046375 2 LALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLL 50 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L 50 (276)
.+|.+|.+.|.||. + ...|++|||+.+|+++ ..+...||-.
T Consensus 7 e~L~~A~~~GYfd~-P---R~~tl~elA~~lgis~----st~~~~LRra 47 (53)
T PF04967_consen 7 EILKAAYELGYFDV-P---RRITLEELAEELGISK----STVSEHLRRA 47 (53)
T ss_pred HHHHHHHHcCCCCC-C---CcCCHHHHHHHhCCCH----HHHHHHHHHH
Confidence 47999999999998 5 3599999999999987 7777777653
No 248
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=95.80 E-value=0.016 Score=44.88 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=39.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|.++||+.+++|+ ..+.++|+.|...|++.... |..|.|.++.-
T Consensus 24 ~~~s~~eia~~~~i~~----~~v~~il~~L~~~gli~~~~---g~~ggy~l~~~ 70 (132)
T TIGR00738 24 GPVSVKEIAERQGISR----SYLEKILRTLRRAGLVESVR---GPGGGYRLARP 70 (132)
T ss_pred CcCcHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEecc---CCCCCccCCCC
Confidence 5899999999999998 99999999999999998753 12356777653
No 249
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.69 E-value=0.023 Score=50.38 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC--------C
Q 046375 136 NKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPH-VITTAPV--------Y 206 (276)
Q Consensus 136 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~-~~~~a~~--------~ 206 (276)
.++|+.||.+ .++..+. ++...++|+|||-|.-++.--+..-+ .++++|+.+ -++.+++ .
T Consensus 99 lRnfNNwIKs-------~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~ 167 (389)
T KOG1975|consen 99 LRNFNNWIKS-------VLINLYT---KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRF 167 (389)
T ss_pred hhhhhHHHHH-------HHHHHHh---ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhh
Confidence 3567777754 2444442 56778999999999999887776332 579999944 4566654 1
Q ss_pred ----CCeEEEEccCCC-------C--CCCccEEEEcccccC-CCcccc
Q 046375 207 ----DGVTHVSGDMFH-------T--IPNADALLLKWVLHN-WSDEAC 240 (276)
Q Consensus 207 ----~ri~~~~~d~~~-------~--~p~~D~i~l~~vlh~-~~~~~~ 240 (276)
-.+.|+.+|-+. + -|.+|+|-+-+++|+ |..++.
T Consensus 168 ~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ 215 (389)
T KOG1975|consen 168 KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEES 215 (389)
T ss_pred hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHH
Confidence 247899999875 1 234999999999997 555443
No 250
>PHA00738 putative HTH transcription regulator
Probab=95.62 E-value=0.015 Score=43.16 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=42.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|... ++.++.+|++.++++. +.+++.|+.|...|+|....
T Consensus 13 tRr~IL~lL~~~-e~~~V~eLae~l~lSQ----ptVS~HLKvLreAGLV~srK 60 (108)
T PHA00738 13 LRRKILELIAEN-YILSASLISHTLLLSY----TTVLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHHc-CCccHHHHHHhhCCCH----HHHHHHHHHHHHCCceEEEE
Confidence 467789999873 4799999999999976 99999999999999999887
No 251
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.61 E-value=0.0069 Score=40.22 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=40.0
Q ss_pred HHcChhhhhhhCCCC-CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGP-ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~-~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++-.|...+++ .|..|||+.+++++ ..+.++++.|...|+|++..
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~~~----~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGISK----STVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeC
Confidence 345566777765222 89999999999977 99999999999999999886
No 252
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=95.59 E-value=0.018 Score=46.03 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=48.9
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 13 PDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 13 f~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
++.+.. ++++...+||+.++++| +.+..+++-|...|++...+ .+.+.+|+.+.-.+.
T Consensus 16 y~l~~~-~~~~~~~diA~~L~Vsp----~sVt~ml~rL~~~GlV~~~~-----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 16 YELLEE-KGFARTKDIAERLKVSP----PSVTEMLKRLERLGLVEYEP-----YGGVTLTEKGREKAK 73 (154)
T ss_pred HHHHhc-cCcccHHHHHHHhCCCc----HHHHHHHHHHHHCCCeEEec-----CCCeEEChhhHHHHH
Confidence 344443 38999999999999988 99999999999999999988 489999998765543
No 253
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.51 E-value=0.021 Score=43.30 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWLV 79 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l~ 79 (276)
.++.++..|... ++.|..+||+.+++++ ..+.+.++-|...|++.+.....+ -.-.+.+|+.+..+.
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~~~----~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACILR----PSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCCCc----hhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 345677778765 6899999999999976 899999999999999999752100 012588888776443
No 254
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=95.32 E-value=0.024 Score=35.94 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=38.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+++.|... ++.|..+|++.+++++ ..+.+.|..|...|++.+..
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~s~----~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGVSE----MTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEee
Confidence 55666655 6799999999999977 99999999999999999876
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.30 E-value=0.065 Score=44.00 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=48.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCeEEEEc-cCCCC---------CCC--ccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVITTAPVYDGVTHVSG-DMFHT---------IPN--ADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~~~a~~~~ri~~~~~-d~~~~---------~p~--~D~i~l 228 (276)
+....+|+|+|+..|.++.-..++. |+-.+.++|+-.+.+. +.+.++.+ |+.+| +|+ +|+|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl- 141 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP----EGATIIQGNDVTDPETYRKIFEALPNRPVDVVL- 141 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC----CCcccccccccCCHHHHHHHHHhCCCCcccEEE-
Confidence 4567999999999999998888887 9999999998443322 22455555 66653 564 78765
Q ss_pred cccccC
Q 046375 229 KWVLHN 234 (276)
Q Consensus 229 ~~vlh~ 234 (276)
+.+.|+
T Consensus 142 SDMapn 147 (232)
T KOG4589|consen 142 SDMAPN 147 (232)
T ss_pred eccCCC
Confidence 444443
No 256
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=95.28 E-value=0.02 Score=49.53 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
.-+.+|+=.|.+ ||.|.+||-..+++++ ..+..-++-|...|++.+++ +.|++|..+..++.
T Consensus 13 ekRk~lLllL~e--gPkti~EI~~~l~vs~----~ai~pqiKkL~~~~LV~~~~------~~Y~LS~~G~iiv~ 74 (260)
T COG4742 13 EKRKDLLLLLKE--GPKTIEEIKNELNVSS----SAILPQIKKLKDKGLVVQEG------DRYSLSSLGKIIVE 74 (260)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCc----HHHHHHHHHHhhCCCEEecC------CEEEecchHHHHHH
Confidence 345677778887 8999999999999988 89999999999999999998 99999999987775
No 257
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.25 E-value=0.035 Score=43.33 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=39.7
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|.++||+.+++|+ ..+.++|+.|...|++.... |..|.|.++..
T Consensus 24 ~~~s~~~ia~~~~ip~----~~l~kil~~L~~~glv~s~~---G~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGISL----SYLEQLFAKLRKAGLVKSVR---GPGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCcCH----HHHHHHHHHHHHCCceEEEe---CCCCCEeccCC
Confidence 5899999999999998 99999999999999998753 12467887663
No 258
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.24 E-value=0.029 Score=45.87 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHHHhcccc-CCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCeEEEEccCCC
Q 046375 151 TREILAGYKH-GFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVITTAPVYDGVTHVSGDMFH 218 (276)
Q Consensus 151 ~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~ 218 (276)
..++.+.++. ...+..++||+||+.|.++..++++. +..+++++|+...- ....+.++.+|+.+
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~ 74 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccch
Confidence 3455666651 12256999999999999999999998 77899999995431 12345555666654
No 259
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.24 E-value=0.026 Score=41.99 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL 196 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl 196 (276)
.....++|||||+|.+.--|.+. +-++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35778999999999998877775 566789986
No 260
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=95.19 E-value=0.033 Score=36.62 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|+..|.. ++.|..+|++.+++++ ..+.+.|+.|...|++....
T Consensus 2 il~~l~~--~~~~~~~i~~~l~is~----~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGLSQ----STVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeeee
Confidence 4455553 7899999999999977 89999999999999999765
No 261
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=95.18 E-value=0.022 Score=47.68 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=48.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCe----EecCcccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPL----YGLTHSSRWL 78 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~----y~~t~~~~~l 78 (276)
..|+..|... ++.|..|||+.+|+++ ..+.+.|+.|...|++.+..... +.|+ |++|+.+..+
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgis~----~tV~~~L~~Le~~GlV~r~~~~~-~~gRp~~~y~LT~~G~~~ 70 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAISP----QAVRRHLKDLETEGLIEYEAVVQ-GMGRPQYHYQLSRQGREQ 70 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEeeccc-CCCCCceEEEECcchhhh
Confidence 4567777665 6899999999999977 99999999999999998863100 1232 7888877543
No 262
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=95.18 E-value=0.028 Score=47.07 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=48.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
++.++..|... ++.+..|||+.+++++ ..+.+.|+.|...|++.+.+. ....|.+|+.+
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~is~----stv~r~L~~Le~~GlI~r~~~---r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGKSL----STISRHLRELEKKGLVEQKGR---KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEcC---CccEEEeCCCC
Confidence 45677777765 6799999999999987 899999999999999999861 13568888754
No 263
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.15 E-value=0.031 Score=42.83 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=37.4
Q ss_pred hhhhhh-hCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIH-SHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~-~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+|-+|- .+ +|.|+++||+.++.+. +.+++-|+-|...|++.+..
T Consensus 32 v~~~LL~~~-~~~tvdelae~lnr~r----Stv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 32 VYKALLEEN-GPLTVDELAEILNRSR----STVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHhhc-CCcCHHHHHHHHCccH----HHHHHHHHHHHHcCCeeeee
Confidence 343443 44 8999999999999955 99999999999999999987
No 264
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.10 E-value=0.0095 Score=39.19 Aligned_cols=48 Identities=27% Similarity=0.448 Sum_probs=40.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++..|... ++.|..+||+.+++++ ..+.++++-|...|++++..
T Consensus 4 ~q~~iL~~l~~~-~~~~~~~la~~~~~~~----~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 4 SQFRILRILYEN-GGITQSELAEKLGISR----STVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEecc
Confidence 345566777766 6899999999999976 99999999999999999876
No 265
>PRK11050 manganese transport regulator MntR; Provisional
Probab=95.08 E-value=0.028 Score=44.85 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
|...+... ++.+..+||+.+++++ ..+.++++.|...|++.+.. ...+++|+.+..+
T Consensus 42 I~~~l~~~-~~~t~~eLA~~l~is~----stVsr~l~~Le~~GlI~r~~-----~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAEV-GEARQVDIAARLGVSQ----PTVAKMLKRLARDGLVEMRP-----YRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHhc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEec-----CCceEECchHHHH
Confidence 44455543 7899999999999977 99999999999999999866 3568888876543
No 266
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=95.07 E-value=0.031 Score=45.84 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=40.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|++.|..+ |++|.++||..+|++. ..++++|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi~~----~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGIKL----NTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEEee
Confidence 3488888876 6999999999999976 89999999999999999543
No 267
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.08 Score=45.34 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCC----CeEEEeec-hHHHhhC-----CC--CCCeEEEEccCCC---CCCC---ccE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPH----IKGINFDL-PHVITTA-----PV--YDGVTHVSGDMFH---TIPN---ADA 225 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~----l~~~~~Dl-p~~~~~a-----~~--~~ri~~~~~d~~~---~~p~---~D~ 225 (276)
+..+++|+|.|+..=+..|+..+-+ ++++-+|. ..++..- ++ .=.|..+++|+.. .+|+ ==.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999999888888877 78999998 5554322 22 2345566677754 2442 234
Q ss_pred EEEcccccCCCcccc
Q 046375 226 LLLKWVLHNWSDEAC 240 (276)
Q Consensus 226 i~l~~vlh~~~~~~~ 240 (276)
+++...|-++++++|
T Consensus 158 ~flGStlGN~tp~e~ 172 (321)
T COG4301 158 VFLGSTLGNLTPGEC 172 (321)
T ss_pred EEecccccCCChHHH
Confidence 567778888888887
No 268
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.00 E-value=0.049 Score=48.53 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=50.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCC--CCC--
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKS-------YPHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFH--TIP-- 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~--~~p-- 221 (276)
.....+|+|-.||+|.++.++.+. .+..+.+++|. +.++..++. .....+..+|.+. ...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456678999999999999998875 47888999998 666654432 3345688899886 232
Q ss_pred -CccEEEE--cccccCC
Q 046375 222 -NADALLL--KWVLHNW 235 (276)
Q Consensus 222 -~~D~i~l--~~vlh~~ 235 (276)
.+|+|++ ++....|
T Consensus 124 ~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp --EEEEEEE--CTCES-
T ss_pred cccccccCCCCcccccc
Confidence 4999986 4444434
No 269
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=94.95 E-value=0.029 Score=38.11 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=46.6
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCC-CCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPS-SPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~-~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
|+++|.+.++|++..+|++.++... ......+.+.|++|-..|++.+.+ -+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g-----~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG-----RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC-----CcccccCHHHH
Confidence 5678887779999999999996542 113489999999999999888766 35567887653
No 270
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=94.93 E-value=0.032 Score=38.05 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=44.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
++.++..|.+ ++.+..+||+.+|++. +.+.+.++.|.+.|+..... ...|++.+...
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~vS~----~tv~~~l~~L~~~g~~i~~~-----~~g~~l~~~~~ 58 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGMSR----TAVNKHIQTLREWGVDVLTV-----GKGYRLPPPIP 58 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEEec-----CCceEecCccc
Confidence 4567788886 6899999999999977 99999999999999955443 15677755433
No 271
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.88 E-value=0.039 Score=43.42 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=46.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~ 77 (276)
++.++-.|... +++|..|||+.+++++ ..+.++++-|...|++.+... .++. .+.+|+.|..
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~----~tvsr~l~~Le~~GlI~R~~~--~~DrR~~~l~LT~~G~~ 106 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDL----GALTRMLDRLVCKGWVERLPN--PNDKRGVLVKLTTSGAA 106 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccC--cccCCeeEeEEChhHHH
Confidence 34556666654 6899999999999977 999999999999999999862 1122 2566666553
No 272
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=94.87 E-value=0.028 Score=37.43 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+++++..+||+.+|++| ..+..+++-|...|+|...+
T Consensus 20 ~~~v~~~~iA~~L~vs~----~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSP----PTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCCh----HHHHHHHHHHHHCCCEEecC
Confidence 48999999999999988 99999999999999999876
No 273
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.82 E-value=0.027 Score=38.13 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=35.7
Q ss_pred Chhhhhh----hCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIH----SHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~----~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+++.|. +.|-|=|+.|||+.+|+.. ...+.+.|++|...|++.+.+
T Consensus 10 ~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S---~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 10 EVLEFIREYIEENGYPPTVREIAEALGLKS---TSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp HHHHHHHHHHHHHSS---HHHHHHHHTSSS---HHHHHHHHHHHHHTTSEEEGC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCC---hHHHHHHHHHHHHCcCccCCC
Confidence 3445443 3556779999999999961 389999999999999999987
No 274
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.82 E-value=0.035 Score=44.24 Aligned_cols=48 Identities=25% Similarity=0.422 Sum_probs=41.6
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
++.|+++||+..|+|| ..+.+++..|...|+|+-... -.|.|+|+...
T Consensus 24 ~~~s~~~IA~~~~is~----~~L~kil~~L~kaGlV~S~rG---~~GGy~Lar~~ 71 (150)
T COG1959 24 GPVSSAEIAERQGISP----SYLEKILSKLRKAGLVKSVRG---KGGGYRLARPP 71 (150)
T ss_pred CcccHHHHHHHhCcCH----HHHHHHHHHHHHcCCEEeecC---CCCCccCCCCh
Confidence 3899999999999998 999999999999999998872 25789987743
No 275
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=94.67 E-value=0.045 Score=38.23 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|=|.|..+ |..++.+||.++++|+ +.++.+|..++.+|-+++..
T Consensus 7 lRd~l~~~-gr~s~~~Ls~~~~~p~----~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR-GRMEAAQISQTLNTPQ----PMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc-CcccHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeec
Confidence 34677776 7899999999999998 99999999999999999885
No 276
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.64 E-value=0.036 Score=42.83 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++.|+.|||+++++++ ..+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~is~----~~v~~~l~~L~~~Gli~~~~g---~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNA----PTVSKILKQLSLAGIVTSKRG---VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEecCC---CCCChhhcC
Confidence 6799999999999988 999999999999999987531 135677744
No 277
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.54 E-value=0.068 Score=42.00 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=39.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+.+.++||+.+|+++ ..++++|..|...|++..... -.|.|.++.
T Consensus 24 ~~~s~~~ia~~~~is~----~~vrk~l~~L~~~Glv~s~~G---~~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGVSR----NHMVKIINQLSRAGYVTAVRG---KNGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCcCH----HHHHHHHHHHHhCCEEEEecC---CCCCeeecC
Confidence 5789999999999988 999999999999999988872 134687764
No 278
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.47 E-value=0.041 Score=46.35 Aligned_cols=61 Identities=23% Similarity=0.473 Sum_probs=47.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC----eEecCccccc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP----LYGLTHSSRW 77 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~----~y~~t~~~~~ 77 (276)
.|...|.++ +|.|+.|||+++|+++ -.+++.|..|.+.|+|+.... -++-| .|++|..+..
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgis~----~avR~HL~~Le~~Glv~~~~~-~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGISP----MAVRRHLDDLEAEGLVEVERQ-QGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCCCH----HHHHHHHHHHHhCcceeeeec-cCCCCCCceeeeecccchh
Confidence 455667766 8999999999999988 899999999999999987631 11123 3888887653
No 279
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.47 E-value=0.064 Score=42.88 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=40.8
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|+++||+..++|+ ..+.++|..|...|+|.-... -.|.|+++..
T Consensus 23 ~~~s~~eIA~~~~is~----~~L~kIl~~L~~aGlv~S~rG---~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGVSE----LFLFKILQPLVEAGLVETVRG---RNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecC---CCCCeeecCC
Confidence 5789999999999998 999999999999999998872 2567888664
No 280
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.43 E-value=0.051 Score=52.21 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhhCCC----C--CCeEEEEccCCC-------C-C
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPH--------IKGINFDL-PHVITTAPV----Y--DGVTHVSGDMFH-------T-I 220 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~--------l~~~~~Dl-p~~~~~a~~----~--~ri~~~~~d~~~-------~-~ 220 (276)
...+|+|.|||+|.++.+++++.+. ..++++|+ |..+..++. . ..+.....|+.. + .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4679999999999999999988763 46788998 776665543 1 235566666553 1 1
Q ss_pred CCccEEEE
Q 046375 221 PNADALLL 228 (276)
Q Consensus 221 p~~D~i~l 228 (276)
+.||+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 24999986
No 281
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=94.40 E-value=0.04 Score=41.00 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=42.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..+||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~----~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGLSP----STVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeceE
Confidence 467788899876 6899999999999988 99999999999999999543
No 282
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=94.37 E-value=0.055 Score=43.48 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=39.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|++.|..+ +.+|-+|||..+|++. ..++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi~~----~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGIKL----NEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCceeee
Confidence 3477888755 7899999999999976 99999999999999996544
No 283
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.13 Score=47.06 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=59.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCe---------------------------------------E
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIK---------------------------------------G 191 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~---------------------------------------~ 191 (276)
+..++..-+ |.....++|==||+|+++++.+...++.- .
T Consensus 180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 444555445 66668999999999999999998886422 6
Q ss_pred EEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCCCccEEEEc
Q 046375 192 INFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIPNADALLLK 229 (276)
Q Consensus 192 ~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p~~D~i~l~ 229 (276)
++.|. |.+++.|+. .+.|+|..+|+.. ++..+|+++++
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 79998 888887765 6889999999976 33358888764
No 284
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.17 E-value=0.054 Score=44.65 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=47.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC---C---C-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT---I---P-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~---~---p-~~D~i~l 228 (276)
...+|||+=||+|.++.+.+.|.- .+++.+|. +..+..+++ .++++.+.+|.+.- . . .+|+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 479999999999999999998853 36899998 777766655 45799999997651 1 2 4999887
No 285
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=94.11 E-value=0.079 Score=41.62 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=45.6
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccccc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWL 78 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l 78 (276)
.++..|...+++.|..|||+.+++++ ..+.++++-|...|+|++.... ++. .+.+|+.|..+
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~~~----~tvt~~v~~Le~~GlV~r~~~~--~DrR~~~l~LT~~G~~~ 99 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGIEQ----PSLVRTLDQLEEKGLISRQTCA--SDRRAKRIKLTEKAEPL 99 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCEeeecCC--CCcCeeeeEEChHHHHH
Confidence 34556654334689999999999977 9999999999999999998621 111 36677766533
No 286
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=94.06 E-value=0.069 Score=40.00 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=45.7
Q ss_pred HcChhhhhh--h-CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccc
Q 046375 9 ELRIPDIIH--S-HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~--~-~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~ 76 (276)
++.++..|. . .++++|..+||..+++++ ..+.++++.|...|++.+... ..+. .+.+|+.+.
T Consensus 27 q~~vL~~l~~~~~~~~~~t~~eL~~~l~~~~----stvs~~i~~Le~kg~I~r~~~--~~D~R~~~i~lT~~G~ 94 (109)
T TIGR01889 27 ELLILYYLGKLENNEGKLTLKEIIKEILIKQ----SALVKIIKKLSKKGYLSKERS--EDDERKVIISINKEQR 94 (109)
T ss_pred HHHHHHHHHhhhccCCcCcHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeccCC--cccCCeEEEEECHHHH
Confidence 455566665 1 126899999999999976 999999999999999998762 1122 256666554
No 287
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.04 E-value=0.15 Score=45.01 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCC-----CCCeEEEEccCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIK-GINFDL-PHVITTAPV-----YDGVTHVSGDMFH 218 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~-~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~ 218 (276)
..++++.+. .......||.==|.|.++..+++++|.+. .+++|. |.+++.+++ .+|++++.++|.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 456667766 55668999999999999999999999776 999999 999998876 6799999999865
No 288
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=94.00 E-value=0.068 Score=36.19 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=39.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..++..|.. ++.+..||++.++++. ..+.+.|+.|...|++....
T Consensus 8 ~~~~il~~l~~--~~~~~~ei~~~~~i~~----~~i~~~l~~L~~~g~i~~~~ 54 (78)
T cd00090 8 TRLRILRLLLE--GPLTVSELAERLGLSQ----STVSRHLKKLEEAGLVESRR 54 (78)
T ss_pred HHHHHHHHHHH--CCcCHHHHHHHHCcCH----hHHHHHHHHHHHCCCeEEEE
Confidence 34566777776 3499999999999977 89999999999999999865
No 289
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=93.95 E-value=0.11 Score=33.66 Aligned_cols=36 Identities=6% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..+ |..+||+.+|++. ..+.+.++.|...|++....
T Consensus 18 ~~l~s~~~la~~~~vs~----~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGVSR----TTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 456 8999999999977 89999999999999998776
No 290
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=93.93 E-value=0.091 Score=38.40 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=39.8
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.++|..|||+.+|+++ ..+.|.|+.|...|++.+.+. .+.|..+.
T Consensus 46 ~~is~~eLa~~~g~sr----~tVsr~L~~Le~~GlI~r~~~----~~~~~~n~ 90 (95)
T TIGR01610 46 DRVTATVIAELTGLSR----THVSDAIKSLARRRIIFRQGM----MGIVGVNT 90 (95)
T ss_pred CccCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeeecC----CceeecCC
Confidence 6899999999999977 899999999999999998763 57788773
No 291
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=93.89 E-value=0.08 Score=34.19 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=33.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
.|+..|..+.+++|.++||+.++++. +.+.+-+..|...|+
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~----rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSR----RTIRRDIKELREWGI 44 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-H----HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCC
Confidence 45667744446799999999999977 999999999999993
No 292
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=93.83 E-value=0.13 Score=34.13 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=30.9
Q ss_pred CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 23 ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 23 ~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|..+||+.++++. ..+.+.+..|...|+++...
T Consensus 26 ~~~~~la~~~~is~----~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGVSR----TTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecC
Confidence 35999999999977 89999999999999998765
No 293
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=93.76 E-value=0.1 Score=39.33 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=44.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCC-CCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSP-SSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~-~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+..|++.|....++.|++||.+.+.-. |.++...+.|.|+.|+..|++.+.... ++..+|.++
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~-~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELG-DGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeC-CCceEEEeC
Confidence 345788887655789999999998321 112448999999999999999987531 123456553
No 294
>PRK10742 putative methyltransferase; Provisional
Probab=93.76 E-value=0.15 Score=44.00 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHhccccCCCCCc--eEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------------CCCeEEEE
Q 046375 152 REILAGYKHGFDSLK--SLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------------YDGVTHVS 213 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------------~~ri~~~~ 213 (276)
+.++.++. +.+.. +|||.=+|.|..+..++.+ +++++.+|. |.+....+. ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45566665 55544 9999999999999999998 778999998 555443322 16799999
Q ss_pred ccCCC---CCC-CccEEEE
Q 046375 214 GDMFH---TIP-NADALLL 228 (276)
Q Consensus 214 ~d~~~---~~p-~~D~i~l 228 (276)
+|..+ ..+ .+|+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 98876 344 4999987
No 295
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=93.67 E-value=0.091 Score=38.09 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 25 SSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 25 ~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+.+||+.+++++ ..+.+.++.|...|++.+.. ...|.+|+.+..+.
T Consensus 2 ~~ela~~l~is~----stvs~~l~~L~~~glI~r~~-----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNVSP----PTVTQMLKKLEKDGLVEYEP-----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCCCh----HHHHHHHHHHHHCCCEEEcC-----CCceEechhHHHHH
Confidence 468999999987 99999999999999999988 35788888765443
No 296
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.65 E-value=0.063 Score=46.60 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCceEEEeeCCccHHHH-HHHHHCCCCeEEEeec-hHHHhhCCC----------------------------------CC
Q 046375 164 SLKSLVDVAGGIGGLIS-EIVKSYPHIKGINFDL-PHVITTAPV----------------------------------YD 207 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~-~l~~~~p~l~~~~~Dl-p~~~~~a~~----------------------------------~~ 207 (276)
+..++||||+|.-.+-. ..++.+. +.+..|. +.-.+..++ ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 56799999999866632 2333322 2577786 443322110 12
Q ss_pred CeE-EEEccCCC--C------CCC-ccEEEEcccccCCCcccc-------------------------------------
Q 046375 208 GVT-HVSGDMFH--T------IPN-ADALLLKWVLHNWSDEAC------------------------------------- 240 (276)
Q Consensus 208 ri~-~~~~d~~~--~------~p~-~D~i~l~~vlh~~~~~~~------------------------------------- 240 (276)
.|+ ++..|.++ | +|+ +|++++..+|..-+.+..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 344 66789987 2 244 999999999976553332
Q ss_pred ---ccCHHHHHHhHhhCCCCceEEEe
Q 046375 241 ---ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 241 ---~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
--+.+.+++.|+++||.+.+...
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 02799999999999999988774
No 297
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.095 Score=49.03 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C-C
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T-I 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~-~ 220 (276)
...++++++ ..+..+++|+=||.|.++..|+++ -.+++++|. |+.++.|++ -++++|+.++..+ + .
T Consensus 282 ~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 282 YETALEWLE--LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHh--hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 344455555 567789999999999999999965 457899998 888877765 4569999999876 2 2
Q ss_pred C---CccEEEEcccccCCCcccc----------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 221 P---NADALLLKWVLHNWSDEAC----------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 221 p---~~D~i~l~~vlh~~~~~~~----------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
. .+|+|++ |-|..-+ .-|...=-..|...|+++.++.+..
T Consensus 358 ~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 358 WEGYKPDVVVV-----DPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred cccCCCCEEEE-----CCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEec
Confidence 2 3677765 3332222 1244544566777788877776553
No 298
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.082 Score=49.73 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred hccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 156 AGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 156 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
++.. ++..+.++||-||+|.++.++++.. .+++++++ |+.++-|+. -.+.+|++|-..+
T Consensus 377 e~~~--l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 377 EWAG--LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHhC--CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 4444 6777999999999999999999864 57899988 888887765 4688999994443
No 299
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=93.41 E-value=0.11 Score=39.55 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=45.6
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 5 KCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 5 ~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..+...|.+++.++ |.+|..|++..+|++- ..+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGasR----~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGASR----NTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCCCH----HHHHHHHHHHHHcCCeEeCC
Confidence 345778899999988 7999999999999965 89999999999999999876
No 300
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.31 E-value=0.12 Score=47.53 Aligned_cols=64 Identities=8% Similarity=0.088 Sum_probs=49.5
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCC------CCCeEEEEccCCCC---C-CCccEEEE
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHI-KGINFDL-PHVITTAPV------YDGVTHVSGDMFHT---I-PNADALLL 228 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l-~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~---~-p~~D~i~l 228 (276)
..+|||.-||+|.++++++.+.++. +++..|. |..++.+++ ...+++..+|...- . ..+|+|.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 3689999999999999999987654 6899998 888877765 34578888887752 1 23888766
No 301
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.24 E-value=0.066 Score=45.06 Aligned_cols=53 Identities=28% Similarity=0.425 Sum_probs=45.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH 218 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~ 218 (276)
....|+|.=||-|.-++.++.++|. ++.+|+ |.-+..++. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5788999999999999999999885 688998 777777765 5799999999987
No 302
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=93.23 E-value=0.057 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=25.6
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCce
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIF 56 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll 56 (276)
|+|-+|||..+|+.+ .-+.|+|..|...|++
T Consensus 2 ~mtr~diA~~lG~t~----ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGLTR----ETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-H----HHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCCcH----HHHHHHHHHHHHcCCC
Confidence 578999999999987 8999999999998874
No 303
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.11 E-value=0.36 Score=44.42 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=48.8
Q ss_pred CCceEEEeeCCccHHHHHH--------HHH-------CCCCeEEEeechH-----HHhhCCC---------------CCC
Q 046375 164 SLKSLVDVAGGIGGLISEI--------VKS-------YPHIKGINFDLPH-----VITTAPV---------------YDG 208 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~l~~~~~Dlp~-----~~~~a~~---------------~~r 208 (276)
+..+|+|+|||+|..+..+ .++ -|+..+..=|+|. +...... ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 5679999999999765332 232 3567777778864 1111110 112
Q ss_pred ---eEEEEccCCCC-CCC--ccEEEEcccccCCCc
Q 046375 209 ---VTHVSGDMFHT-IPN--ADALLLKWVLHNWSD 237 (276)
Q Consensus 209 ---i~~~~~d~~~~-~p~--~D~i~l~~vlh~~~~ 237 (276)
+..++|.|+.. +|. .++++.++.||..+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 46677899984 673 899999999998773
No 304
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=92.74 E-value=0.14 Score=36.92 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=49.7
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHH----------HHhcCCce-eecCCCCCCCCeEecCc
Q 046375 6 CAIELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMR----------LLGHKNIF-AAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 6 ~a~~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~----------~L~~~Gll-~~~~~~~~~~~~y~~t~ 73 (276)
.=++..++..|... ..+.++.|||..+++++ ..+...|+ .|+.+|+| .+.. +++.-.|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~----snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~--~~g~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDY----SNVLGALRGDGKRYNKEDSLVGLGLVEEEEE--KGGFKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCH----HHHHHHHhcCCCCcCcchhHHHcCCeeEeee--cCCeeEEEeCh
Confidence 44567788888765 47899999999999977 77777775 58999999 3332 22344799999
Q ss_pred ccccc
Q 046375 74 SSRWL 78 (276)
Q Consensus 74 ~~~~l 78 (276)
.+..+
T Consensus 82 ~G~~~ 86 (90)
T PF07381_consen 82 KGKRI 86 (90)
T ss_pred hhhhH
Confidence 87643
No 305
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.70 E-value=0.24 Score=43.43 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=53.3
Q ss_pred CCceEEEeeCCccHHHH-HHHHHC-CCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCC---CCCCccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLIS-EIVKSY-PHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFH---TIPNADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~-~l~~~~-p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~---~~p~~D~i~l~ 229 (276)
.+.+|+=||+|.==++. .+++++ ++..++++|. |..++.+++ ..+++|+.+|..+ ++..+|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45799999999765554 455443 7888999998 888777654 6899999999976 34569998876
Q ss_pred ccccCCCcccc------------------ccCHHHHHHhH-------hhCCCCceEE-EecCC-ccEEEEEec
Q 046375 230 WVLHNWSDEAC------------------ERTELEWKNIP-------EKGGSPRYRI-IKIPA-LQCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~~~~------------------~rt~~e~~~ll-------~~aGf~~~~~-~~~~~-~~~vi~a~~ 275 (276)
--.- .+.++. .|+..-.+.+| .--||++..+ +|.+. ..++|.++|
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT---EEEEE--
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCCceeEEEEEEe
Confidence 5442 111121 13222222221 1129998555 55554 589999987
No 306
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.44 Score=41.49 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=64.3
Q ss_pred HHHHHHhhhhhh----HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-------
Q 046375 139 FNEGMACNAKFL----TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------- 205 (276)
Q Consensus 139 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------- 205 (276)
|..+|...++.. ..-++..++ .....+||+=|.|+|.++.++++.. |.-+..-+|. ..-.+.+.+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 555666555432 345667777 7788999999999999999999987 8888999998 333334433
Q ss_pred CCCeEEEEccCCCC-CC--C--ccEEEE
Q 046375 206 YDGVTHVSGDMFHT-IP--N--ADALLL 228 (276)
Q Consensus 206 ~~ri~~~~~d~~~~-~p--~--~D~i~l 228 (276)
.+.+++..-|+-.. ++ + ||.|++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE
Confidence 78899999888762 32 2 888876
No 307
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.34 E-value=0.2 Score=43.62 Aligned_cols=176 Identities=13% Similarity=0.124 Sum_probs=95.0
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccccCCCCCChhhHH--HhhcChhhhh
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVTGSDSNQLGPVF--LVENHPYMVN 101 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 101 (276)
+.-.|+.....|- +.+..+++.|...|++.... +...+|..+.-++..- .+..-- .......-.-
T Consensus 36 d~wkIvd~s~~pl----p~v~~i~~~l~~egiv~~~~------g~v~~TekG~E~~e~~---gi~~~~~~~C~~CeGrgi 102 (354)
T COG1568 36 DFWKIVDYSDLPL----PLVASILEILEDEGIVKIEE------GGVELTEKGEELAEEL---GIKKKYDYTCECCEGRGI 102 (354)
T ss_pred chHhhhhhccCCc----hHHHHHHHHHHhcCcEEEec------CcEeehhhhHHHHHHh---CCCccccccccCcCCccc
Confidence 8889999999987 89999999999999999998 6799999987666421 111100 0000000000
Q ss_pred hhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHH-HHHhccccCCCCCceEEEeeCCccHHHH
Q 046375 102 SWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTR-EILAGYKHGFDSLKSLVDVAGGIGGLIS 180 (276)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~-~~~~~~~~~~~~~~~vlDvGgG~G~~~~ 180 (276)
+.....+.+++ +-++....|+-...+.+....-...... .++..- +--..+.|+-|| -.-..++
T Consensus 103 ~l~~f~dll~k------------f~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~R--GDL~gK~I~vvG-DDDLtsi 167 (354)
T COG1568 103 SLQAFKDLLEK------------FREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSR--GDLEGKEIFVVG-DDDLTSI 167 (354)
T ss_pred cchhHHHHHHH------------HHHHHhcCCCcchhcccccccccceeeeeeeeccc--cCcCCCeEEEEc-CchhhHH
Confidence 11111222210 1111112222222222211100000000 001100 012357788899 5556666
Q ss_pred HHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCCC-----ccEEE
Q 046375 181 EIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIPN-----ADALL 227 (276)
Q Consensus 181 ~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p~-----~D~i~ 227 (276)
+++-..---++.++|+ ...+.-.++ -++|+.+..|..+|+|+ ||+++
T Consensus 168 a~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 168 ALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred HHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 6555544447899998 444443332 56799999999999883 89865
No 308
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.25 E-value=0.11 Score=47.35 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDM 216 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~ 216 (276)
.+.+++.++ ..+. +++|+=||.|.++..+++... +++++|. +++++.|+. -++++|+.++.
T Consensus 186 ~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 445556655 4443 799999999999999999764 6899998 888887765 56889987653
No 309
>PRK06474 hypothetical protein; Provisional
Probab=92.16 E-value=0.15 Score=41.83 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=52.3
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCC---CCCCeEecCccccc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSD---GGEPLYGLTHSSRW 77 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~---~~~~~y~~t~~~~~ 77 (276)
+|.--.++.|++.|...+++.|+.+|++.+ +++. ..+.|.|+.|...|++....... +-+..|++++.+-.
T Consensus 7 ~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~----aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~ 81 (178)
T PRK06474 7 ILMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQ----ATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAK 81 (178)
T ss_pred hhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceee
Confidence 455567888999998753459999999999 6755 78999999999999999865210 01234777775543
No 310
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.12 E-value=0.51 Score=39.74 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=54.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-----CCCeEEEEccCCC---CCCC--ccEEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-----YDGVTHVSGDMFH---TIPN--ADALLL 228 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-----~~ri~~~~~d~~~---~~p~--~D~i~l 228 (276)
++..+||.||=|-|.....+.++-|..+.++---|+|.+.++. .++|....|-..+ .+|+ ||-|+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 5789999999999999999999999988777667999999887 6788888885554 3553 787665
No 311
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.12 E-value=0.43 Score=40.85 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=54.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC----C-ccEEEE---
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP----N-ADALLL--- 228 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p----~-~D~i~l--- 228 (276)
-..++|+=||- .=..+++++...+..+++|+|+ ..+++-.++ .-.|+.+..|+.+|+| + ||+++.
T Consensus 43 L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 34688998994 4455666666777789999999 666665543 3359999999999877 2 899864
Q ss_pred ----------cccccCCCcccc---------ccCHH---HHHHhHhhCCCCceEEEec
Q 046375 229 ----------KWVLHNWSDEAC---------ERTEL---EWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 229 ----------~~vlh~~~~~~~---------~rt~~---e~~~ll~~aGf~~~~~~~~ 264 (276)
++.+-....+.+ +.+.. ++++.+.+.||.+..+.+.
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence 222222222211 23454 4578888999999998765
No 312
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=92.11 E-value=0.066 Score=38.63 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred hhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCC--CeEecCccccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGE--PLYGLTHSSRWLV 79 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~--~~y~~t~~~~~l~ 79 (276)
|+..|.. ++....||.+.+ |+++ ..+.+-|+.|...|++.+.... ..+ -.|++|+.+..+.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~is~----~~L~~~L~~L~~~GLv~r~~~~-~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGISP----KVLSQRLKELEEAGLVERRVYP-EVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS-H----HHHHHHHHHHHHTTSEEEEEES-SSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchhHH----HHHHHHHHHHHHcchhhccccc-CCCCCCccCCCcCHHHHH
Confidence 4555665 799999999999 8977 8999999999999999987421 011 1499988877555
No 313
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=92.09 E-value=0.21 Score=42.30 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=48.8
Q ss_pred hHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 2 LALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+++...++..|...|++. +|..+-|||+++|+|. ..+..-+..|...|++....
T Consensus 18 kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLpq----st~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 18 KALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQ----STMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCch----hhhhhhHHHHHhcCceeeee
Confidence 578889999999999976 7999999999999987 89999999999999998653
No 314
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=91.97 E-value=0.27 Score=42.53 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=48.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
|.+++-.|-.. |+.|+.||++.+|+|- ..+..+|+-|...|++.... |.|..|+.-+....+
T Consensus 18 Ea~vY~aLl~~-g~~tA~eis~~sgvP~----~kvY~vl~sLe~kG~v~~~~---g~P~~y~av~p~~~i 79 (247)
T COG1378 18 EAKVYLALLCL-GEATAKEISEASGVPR----PKVYDVLRSLEKKGLVEVIE---GRPKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHHHHh-CCccHHHHHHHcCCCc----hhHHHHHHHHHHCCCEEeeC---CCCceEEeCCHHHHH
Confidence 33445555544 8999999999999987 89999999999999999875 346788886654433
No 315
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=91.97 E-value=0.2 Score=42.39 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=45.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
.+.+...+... ..+|..|||+.+++++ ..+.+.|+.|...|++++... .....+++|+.+.
T Consensus 9 ~iallg~l~~~-~~IS~~eLA~~L~iS~----~Tvsr~Lk~LEe~GlI~R~~~--~r~~~v~LTekG~ 69 (217)
T PRK14165 9 KLALLGAVNNT-VKISSSEFANHTGTSS----KTAARILKQLEDEGYITRTIV--PRGQLITITEKGL 69 (217)
T ss_pred HHHHHhccCCC-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEEc--CCceEEEECHHHH
Confidence 33344455543 4689999999999977 999999999999999998751 1124577777665
No 316
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=91.95 E-value=0.18 Score=34.79 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-+.|-++||..+|++. ..+.+.|+.|...|++...+ +.+.+..
T Consensus 27 ~~lt~~~iA~~~g~sr----~tv~r~l~~l~~~g~I~~~~------~~i~I~d 69 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSR----ETVSRILKRLKDEGIIEVKR------GKIIILD 69 (76)
T ss_dssp EESSHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEET------TEEEESS
T ss_pred ecCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEcC------CEEEECC
Confidence 4789999999999976 89999999999999999887 6777654
No 317
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=91.90 E-value=0.17 Score=40.88 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=43.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|..+|.++ +.+|..|||+++|+++ ..+.+=++-|...|++....
T Consensus 15 ~D~~IL~~Lq~d-~R~s~~eiA~~lglS~----~tv~~Ri~rL~~~GvI~~~~ 62 (164)
T PRK11169 15 IDRNILNELQKD-GRISNVELSKRVGLSP----TPCLERVRRLERQGFIQGYT 62 (164)
T ss_pred HHHHHHHHhccC-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 678899999987 7999999999999988 99999999999999998543
No 318
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=91.89 E-value=0.17 Score=40.25 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|.+.|..+ +..|..+||+++|+++ ..+.+=++.|...|++....
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lglS~----~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGVSP----GTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeeEE
Confidence 577899999986 7999999999999988 99999999999999998543
No 319
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.64 E-value=0.44 Score=41.09 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------------CCCeEEEEccCCCC------CCC-cc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV------------YDGVTHVSGDMFHT------IPN-AD 224 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~------------~~ri~~~~~d~~~~------~p~-~D 224 (276)
....+|++|+|+|..++..+. .....++.-|.|.+++..+. +..+.....+.-++ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999955555554 46778888998777765432 33566666555442 234 89
Q ss_pred EEEEcccccCC
Q 046375 225 ALLLKWVLHNW 235 (276)
Q Consensus 225 ~i~l~~vlh~~ 235 (276)
+++.+.+++.-
T Consensus 165 lilasDvvy~~ 175 (248)
T KOG2793|consen 165 LILASDVVYEE 175 (248)
T ss_pred EEEEeeeeecC
Confidence 99999997653
No 320
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.48 E-value=2.9 Score=37.14 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=41.8
Q ss_pred CCCceEEEeeCCccHH-HHHHHHHCCCCeEEEeec-hHHHhhCCC--------CCCeEEEEc----cCCCCC--C--Ccc
Q 046375 163 DSLKSLVDVAGGIGGL-ISEIVKSYPHIKGINFDL-PHVITTAPV--------YDGVTHVSG----DMFHTI--P--NAD 224 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~-~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~----d~~~~~--p--~~D 224 (276)
+...++||||+|+... .+..++.| +.++++.|. +..++.|++ .+||+++.. +++..+ + .+|
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence 3467999999998854 45555554 899999998 777776654 678988754 455532 2 288
Q ss_pred EEEEcccccCC
Q 046375 225 ALLLKWVLHNW 235 (276)
Q Consensus 225 ~i~l~~vlh~~ 235 (276)
..+|+==+|.-
T Consensus 180 ftmCNPPFy~s 190 (299)
T PF05971_consen 180 FTMCNPPFYSS 190 (299)
T ss_dssp EEEE-----SS
T ss_pred EEecCCccccC
Confidence 88875555543
No 321
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=91.40 E-value=0.16 Score=44.20 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=44.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..+.++|.++||.++-+||.+++|.|. .-+.|+|+-|..+|++++..
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lglsk----tTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGLSK----TTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCCCh----HHHHHHHHHHHhCCceEEEE
Confidence 5567889998888899999999999987 99999999999999999987
No 322
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=91.34 E-value=0.22 Score=36.15 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=42.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.|..+|... +|-.+.-||..++++. .-+...|+.|..+|++++..
T Consensus 8 l~~~IL~hl~~~-~~Dy~k~ia~~l~~~~----~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 8 LDLKILQHLKKA-GPDYAKSIARRLKIPL----EEVREALEKLEEMGLLERVE 55 (92)
T ss_pred hHHHHHHHHHHH-CCCcHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEEec
Confidence 356778888876 7999999999999977 89999999999999999998
No 323
>PHA02943 hypothetical protein; Provisional
Probab=91.29 E-value=0.26 Score=38.86 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=64.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccccCCCCCChhhH
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVTGSDSNQLGPV 90 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~ 90 (276)
.|.+.|.. |+.|..|||+++|++- ..+.-.|..|...|.+.+... |.. +-+...+. . +. ..
T Consensus 15 eILE~Lk~--G~~TtseIAkaLGlS~----~qa~~~LyvLErEG~VkrV~~-----G~~-----tyw~l~~d-a-y~-~~ 75 (165)
T PHA02943 15 KTLRLLAD--GCKTTSRIANKLGVSH----SMARNALYQLAKEGMVLKVEI-----GRA-----AIWCLDED-A-YT-NL 75 (165)
T ss_pred HHHHHHhc--CCccHHHHHHHHCCCH----HHHHHHHHHHHHcCceEEEee-----cce-----EEEEEChH-H-HH-HH
Confidence 45667743 7899999999999965 899999999999999998872 422 22333332 1 21 11
Q ss_pred HHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHH
Q 046375 91 FLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMA 144 (276)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 144 (276)
+ ..++ ..+...+++..-.|-. -...+.-+.++++....|.+...
T Consensus 76 v----~~~~----Relwrlv~s~~~kfi~--p~~l~~li~kd~~a~~~~ak~v~ 119 (165)
T PHA02943 76 V----FEIK----RELWRLVCNSRLKFIT--PSRLLRLIAKDTEAHNIFAKYVP 119 (165)
T ss_pred H----HHHH----HHHHHHHHhccccccC--hHHHHHHHHhCHHHHHHHHHhcC
Confidence 1 1233 4444555554432211 02455566677777666666544
No 324
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=90.97 E-value=0.31 Score=40.47 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=41.1
Q ss_pred HHHcChhhhhhh----CCCCCCHHHHHhhcCCC-CCCCcchHHHHHHHHhcCCceeecC
Q 046375 7 AIELRIPDIIHS----HGGPITSSQIASSIDSP-SSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 7 a~~l~lf~~L~~----~~~~~t~~eLA~~~~~~-~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..+..|++.|.+ .+-+.|+.|||+.+|++ + ..+.+.|+.|...|++.+.+
T Consensus 6 ~~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~~s~----~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 6 ARQQEVLDLIRAHIESTGYPPSIREIARAVGLRSP----SAAEEHLKALERKGYIERDP 60 (199)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCCh----HHHHHHHHHHHHCCCEecCC
Confidence 345566677763 23568999999999997 6 89999999999999999987
No 325
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=90.93 E-value=0.21 Score=34.34 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhc---CC--CCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSI---DS--PSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~---~~--~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+.+++.++|+.+ +. .. +++..+++.|.++|++++.+
T Consensus 23 ~~i~l~~ia~~l~~~~~k~~~----RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKTQR----RRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHHHC----HHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccccc----chhhHHHHHHHHhCceeecC
Confidence 789999999999 88 55 99999999999999999966
No 326
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.88 E-value=0.34 Score=43.77 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=70.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--CC-CCccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--TI-PNADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~~-p~~D~i~l~~vl 232 (276)
...+|||+=+|.|.|++.+++...- +++.+|+ |..+..+++ .++|+.+.||..+ +. +.||-|+|++.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999999997544 3999999 998877665 6779999999988 33 459999998764
Q ss_pred --cCCCcccc---------------------ccCHHHHHHhHhhCCCCc
Q 046375 233 --HNWSDEAC---------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 233 --h~~~~~~~---------------------~rt~~e~~~ll~~aGf~~ 258 (276)
|.+-+.-. ++-..++.......|+++
T Consensus 267 ~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 267 SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 22222111 234677778888887654
No 327
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=90.68 E-value=0.66 Score=43.96 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCCC-ccEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIPN-ADALL 227 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p~-~D~i~ 227 (276)
.....+|||+++|.|.=+..++....+ ..++..|. +.-+..+++ ..+|.+...|... .+|+ ||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 456789999999999999999998754 47888998 665555443 4567777777654 3454 89998
No 328
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=90.55 E-value=0.23 Score=47.34 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=55.0
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccccCCC
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVTGSD 83 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 83 (276)
..+..++..|... ++.|..+||+.+++++ ..+.++++.|.+.|++++... ....|.+|+.++ ++....+
T Consensus 6 ~~e~~vL~~L~~~-~~~s~~eLA~~l~l~~----~tVt~~i~~Le~kGlV~~~~~---~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 6 PNEKKVLKALKEL-KEATLEELAEKLGLPP----EAVMRAAEWLEEKGLVKVEER---VEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHhCcCH----HHHHHHHHHHHhCCCEEEEee---eEEEEEECHHHHHHHHhcCH
Confidence 3466777888765 6899999999999976 999999999999999998762 124699999997 4554444
No 329
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=90.39 E-value=0.29 Score=38.64 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=44.1
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..+..|...|..+ ++.+..+||+++|+++ ..+.+-++-|...|++....
T Consensus 8 ~~D~~IL~~L~~d-~r~~~~eia~~lglS~----~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 8 DIDRRILRLLQED-ARISNAELAERVGLSP----STVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCceeeEE
Confidence 3567889999986 7899999999999988 99999999999999999776
No 330
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.28 E-value=0.37 Score=39.41 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=46.8
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCC-CeEecCccccccc
Q 046375 10 LRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGE-PLYGLTHSSRWLV 79 (276)
Q Consensus 10 l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~-~~y~~t~~~~~l~ 79 (276)
+.++-.|... ++++|..|||+.+++++ ..+.++++-|...|++++....++.. -.+.+|+.|..+.
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l~~----~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGSSR----TNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3445555432 25799999999999976 99999999999999999986211111 1467777765444
No 331
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=90.16 E-value=0.48 Score=37.13 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|+.|.+|||-+.|++. +.+..-|.++.+.|-|.+..
T Consensus 5 Ga~T~eELA~~FGvtt----RkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGVTT----RKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCcch----hhhHHHHHHHHhcceeEEec
Confidence 8999999999999987 99999999999999999887
No 332
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=90.15 E-value=0.37 Score=37.08 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=41.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+.|...|+.. +|.|+.|+|+..|-.. ..+.|=|+.|...|++....
T Consensus 66 nleLl~~Ia~~-~P~Si~ElAe~vgRdv----~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 66 NLELLELIAQE-EPASINELAELVGRDV----KNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHHHHHHhc-CcccHHHHHHHhCcch----HHHHHHHHHHHhcCeEEEec
Confidence 35677788876 8999999999999966 99999999999999999887
No 333
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.12 E-value=0.18 Score=39.84 Aligned_cols=69 Identities=13% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCC
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPN 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~ 222 (276)
+.+++.+. -....+++|+|.|.|..-.+.++.. -...+++++ |-.+...+- +.+.+|.--|+++ ++..
T Consensus 62 ~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 34455544 2344799999999999998888765 345788998 655544332 6788888899988 6654
Q ss_pred c
Q 046375 223 A 223 (276)
Q Consensus 223 ~ 223 (276)
+
T Consensus 139 y 139 (199)
T KOG4058|consen 139 Y 139 (199)
T ss_pred c
Confidence 3
No 334
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=90.08 E-value=0.15 Score=37.80 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=34.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|++.|... +.++-++||..+|+++ .-++++|..|...|++....
T Consensus 17 ~Il~~L~~~-~~l~de~la~~~~l~~----~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 17 RILDALLRK-GELTDEDLAKKLGLKP----KEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHH---B-HHHHHHTT-S-H----HHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCeEEEE
Confidence 367888755 7899999999999977 99999999999999997654
No 335
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.79 E-value=1.4 Score=38.38 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------CCCeEEEEccCCCCC----------CC-
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV---------YDGVTHVSGDMFHTI----------PN- 222 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~---------~~ri~~~~~d~~~~~----------p~- 222 (276)
.+..+||.+|||-=...-++... ++++++=+|+|++++.-++ ..++++++.|+.+.+ |+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999988888777422 3577888889998864322 578999999997421 11
Q ss_pred ccEEEEcccccCCCcccc
Q 046375 223 ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~ 240 (276)
.-++++--++.++++++.
T Consensus 159 ptl~i~EGvl~YL~~~~v 176 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAV 176 (260)
T ss_pred CeeeeecchhhcCCHHHH
Confidence 347777788888888776
No 336
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=89.79 E-value=0.55 Score=38.24 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=41.5
Q ss_pred CCCCHHHHHhhc--CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccc
Q 046375 21 GPITSSQIASSI--DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRW 77 (276)
Q Consensus 21 ~~~t~~eLA~~~--~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~ 77 (276)
+..+.++||+++ +++. .-++.-|+.|...|++++++ +|.|..|..+-.
T Consensus 38 ~~~d~~~iak~l~p~is~----~ev~~sL~~L~~~gli~k~~-----~g~y~~t~~~l~ 87 (171)
T PF14394_consen 38 FAPDPEWIAKRLRPKISA----EEVRDSLEFLEKLGLIKKDG-----DGKYVQTDKSLT 87 (171)
T ss_pred CCCCHHHHHHHhcCCCCH----HHHHHHHHHHHHCCCeEECC-----CCcEEEecceee
Confidence 334999999999 9977 89999999999999999999 579999886533
No 337
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=89.78 E-value=0.51 Score=33.00 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=40.8
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec-CCCCCCCCeEecCccc
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ-HPSDGGEPLYGLTHSS 75 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~-~~~~~~~~~y~~t~~~ 75 (276)
+.|+..++||+.++++| .-++--+..|.++|||+.. .. .+.|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~s~----aTIRN~M~~Le~lGlve~~p~~----s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGRSP----ATIRNEMADLEELGLVESQPHP----SGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCCCh----HHHHHHHHHHHHCCCccCCCCC----CCCCCcCHHH
Confidence 58999999999999988 8999999999999999853 32 2678888765
No 338
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.71 E-value=0.42 Score=43.13 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCC-CCCe-----EEEEccCCC---CCCCccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIK-GINFDL-PHVITTAPV-YDGV-----THVSGDMFH---TIPNADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~-~~~~Dl-p~~~~~a~~-~~ri-----~~~~~d~~~---~~p~~D~i~l~~vl 232 (276)
.+++|||||.|.|.-+.++-.-+|+++ +++++. |.+-+.... ..++ --...|+.. ++|.+|.|.+..++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357899999999999999999999997 677776 332222111 1111 111223332 57778888887777
Q ss_pred cCCCcccc
Q 046375 233 HNWSDEAC 240 (276)
Q Consensus 233 h~~~~~~~ 240 (276)
|..-++..
T Consensus 193 ~eLl~d~~ 200 (484)
T COG5459 193 DELLPDGN 200 (484)
T ss_pred hhhccccC
Confidence 76655544
No 339
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=89.65 E-value=0.79 Score=37.77 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=48.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC---CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP---NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p---~~D~i~l 228 (276)
...++||+=+|+|.++.+.+.|.- .+++.+|. ..++..+++ ..+++++..|... ..+ .||+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 478999999999999999999864 36888887 555555544 4788888888874 121 3899886
No 340
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=89.61 E-value=0.46 Score=39.19 Aligned_cols=63 Identities=16% Similarity=0.002 Sum_probs=47.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWLV 79 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l~ 79 (276)
+.+.-.|... +++|..+||+.++++. ..+.++++-|...|++.+.... ++. ...+|+.|..+.
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l~~----sTvtr~l~rLE~kGlI~R~~~~--~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVMHV----STAFNFSKKLEERGYLTFSKKE--DDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCCCH----hhHHHHHHHHHHCCCEEecCCC--CCCCeeEEEECHHHHHHH
Confidence 4566677665 6899999999999976 8999999999999999987521 112 367777766443
No 341
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.54 E-value=1.2 Score=37.98 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCCCCCeEEEEc-cCCC--C--CCC-c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL--PHVITTAPVYDGVTHVSG-DMFH--T--IPN-A 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl--p~~~~~a~~~~ri~~~~~-d~~~--~--~p~-~ 223 (276)
...++.|+ ...+.+.+||||..+|.|+.-++++. -.+++++|. -+.....+..+||..++. |+.. | +.+ .
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 44566665 23577999999999999999999974 236899996 666667777777766663 5543 1 221 3
Q ss_pred cEEEE-----cc--c---ccCCCcccc-----------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 224 DALLL-----KW--V---LHNWSDEAC-----------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 224 D~i~l-----~~--v---lh~~~~~~~-----------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
|++++ |- + ++....+.+ .+...++.+++.+.||++..+...
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 33332 11 1 222222221 135788899999999999888654
No 342
>PRK00215 LexA repressor; Validated
Probab=89.40 E-value=0.51 Score=39.36 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+.+.|..|||+++|+ +. ..+.++|+.|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~~~----~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRSP----SAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCCh----HHHHHHHHHHHHCCCEEeCC
Confidence 467899999999999 77 89999999999999999887
No 343
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=89.13 E-value=0.5 Score=35.24 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=45.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
++.++..|... ++.+..+||+.+++++ ..+.++++-|...|++.+....++. .-.+.+|+.+..
T Consensus 24 q~~~L~~l~~~-~~~~~~~la~~l~i~~----~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~ 88 (126)
T COG1846 24 QYQVLLALYEA-GGITVKELAERLGLDR----STVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRE 88 (126)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHH
Confidence 44556666654 3444499999999977 9999999999999999998731111 114677776653
No 344
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=88.96 E-value=0.056 Score=45.08 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPH 188 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~ 188 (276)
+.+.++||+|.|.|..+..++..+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee 136 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE 136 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH
Confidence 45789999999999999888776654
No 345
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=88.85 E-value=0.26 Score=35.90 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=46.2
Q ss_pred hhhhhh-hCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 12 IPDIIH-SHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 12 lf~~L~-~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+||+|. ..+++...--|.-.++++- .....+++.|+..|++..... +....|.+|+.+.-|.
T Consensus 20 i~dIL~~~~~~~~~~Tri~y~aNlny----~~~~~yi~~L~~~Gli~~~~~--~~~~~y~lT~KG~~fl 82 (95)
T COG3432 20 IFDILKAISEGGIGITRIIYGANLNY----KRAQKYIEMLVEKGLIIKQDN--GRRKVYELTEKGKRFL 82 (95)
T ss_pred HHHHHHHhcCCCCCceeeeeecCcCH----HHHHHHHHHHHhCCCEEeccC--CccceEEEChhHHHHH
Confidence 466776 3337788888888888854 899999999999997776662 1122699999987443
No 346
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=88.77 E-value=1.2 Score=30.71 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=38.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHH--hcCCceeecCCCCCCCCeEec
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLL--GHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L--~~~Gll~~~~~~~~~~~~y~~ 71 (276)
+.+.|... ++.|++||++++|+.+ ..++..|--+ -..|+-......+++.-.|++
T Consensus 15 li~mL~rp-~GATi~ei~~atGWq~----HTvRgalsg~~kKklGl~i~s~k~~g~~r~YrI 71 (72)
T PF11994_consen 15 LIAMLRRP-EGATIAEICEATGWQP----HTVRGALSGLLKKKLGLTITSEKVDGGGRRYRI 71 (72)
T ss_pred HHHHHcCC-CCCCHHHHHHhhCCch----hhHHHHHHHHHHHhcCcEEEeeecCCCeeeEee
Confidence 56667765 6899999999999977 6666666666 555765555443444456765
No 347
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=88.59 E-value=0.59 Score=43.56 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 19 HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 19 ~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+.|.|.+||++.+++++ +.++++|+.|...|++.+.+ ++.|.+..
T Consensus 307 ~g~~~t~~~La~~l~~~~----~~v~~iL~~L~~agLI~~~~-----~g~~~l~r 352 (412)
T PRK04214 307 HGKALDVDEIRRLEPMGY----DELGELLCELARIGLLRRGE-----RGQWVLAR 352 (412)
T ss_pred cCCCCCHHHHHHHhCCCH----HHHHHHHHHHHhCCCeEecC-----CCceEecC
Confidence 347899999999999988 99999999999999999765 36676644
No 348
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.52 E-value=7.4 Score=32.62 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=75.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-h----HHHhhCCCCCCeEEEEccCCCCC------CCccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-P----HVITTAPVYDGVTHVSGDMFHTI------PNADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p----~~~~~a~~~~ri~~~~~d~~~~~------p~~D~i~l~~ 230 (276)
.....+||-+|..+|.....+..-.++-.+.+++. | +.++.+++.++|--+-+|...|. +..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 67889999999999999999999888777888886 3 35566666777777778887752 34777653
Q ss_pred cccCCCc-ccc----------------------cc------C----HHHHHHhHhhCCCCceEEEecCC---ccEEEEEe
Q 046375 231 VLHNWSD-EAC----------------------ER------T----ELEWKNIPEKGGSPRYRIIKIPA---LQCIIESY 274 (276)
Q Consensus 231 vlh~~~~-~~~----------------------~r------t----~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~a~ 274 (276)
|... .|+ -| + ..+-.+-|++.||++.++..+.. .+.+|.++
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEEEe
Confidence 2221 222 01 2 22233456777999999988854 47888776
Q ss_pred c
Q 046375 275 P 275 (276)
Q Consensus 275 ~ 275 (276)
+
T Consensus 229 ~ 229 (231)
T COG1889 229 Y 229 (231)
T ss_pred e
Confidence 4
No 349
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.28 E-value=0.18 Score=37.20 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=19.9
Q ss_pred EEeeCCccHHHHHHHHHCCCC---eEEEeec-h---HHHhhCCC---CCCeEEEEccCCC---CCC--CccEEEE
Q 046375 169 VDVAGGIGGLISEIVKSYPHI---KGINFDL-P---HVITTAPV---YDGVTHVSGDMFH---TIP--NADALLL 228 (276)
Q Consensus 169 lDvGgG~G~~~~~l~~~~p~l---~~~~~Dl-p---~~~~~a~~---~~ri~~~~~d~~~---~~p--~~D~i~l 228 (276)
|+||+..|..+..+++..+.. +++.+|. + .+-+..++ .++++++.+|..+ .++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 689999999999988877665 5799998 5 33344443 6789999999876 233 4888775
No 350
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=88.14 E-value=0.76 Score=37.54 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=48.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++..|.+.|..+|...|+.+||.++|++. +-+.|-|.-|...|.|...+ +++-+|...-.
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i~k----~~vNr~LY~L~~~~~v~~~~---~~pP~W~~~~~ 64 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGISK----HEANRCLYRLLESDAVSCED---GCPPLWSVECE 64 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCccH----HHHHHHHHHHhhcCcEecCC---CCCCccccccC
Confidence 46789999998754699999999999965 88999999999999997665 34556555443
No 351
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=88.09 E-value=0.56 Score=40.63 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=41.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|.+.|.+. +.+++.|||+.+|+++ .-++|-|+.|.+.|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~vS~----~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQL-GFVTVEKVIERLGISP----ATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEec
Confidence 4577888876 7899999999999987 89999999999999999877
No 352
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=87.85 E-value=0.76 Score=41.60 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCCCceEEEeeCCccHHHHHHH--------HHC--------CCCeEEEeechH-----HHhhCCC-------CCC--eEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIV--------KSY--------PHIKGINFDLPH-----VITTAPV-------YDG--VTH 211 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~--------~~~--------p~l~~~~~Dlp~-----~~~~a~~-------~~r--i~~ 211 (276)
.++.-+|+|+||.+|..+..+. +++ |...++.-|+|. +...... ... +..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 5677899999999999885543 222 334566668865 1111111 122 566
Q ss_pred EEccCCCC-CCC--ccEEEEcccccCCCc
Q 046375 212 VSGDMFHT-IPN--ADALLLKWVLHNWSD 237 (276)
Q Consensus 212 ~~~d~~~~-~p~--~D~i~l~~vlh~~~~ 237 (276)
++|.|+.. +|. .|+++.++.||..+.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred cCchhhhccCCCCceEEEEEechhhhccc
Confidence 78999985 673 899999999998874
No 353
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=87.74 E-value=0.8 Score=34.71 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++|++|||+.+.|++ +.++.+|+-|...|.++..+
T Consensus 18 ~~vtl~elA~~l~cS~----Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFCSR----RNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCCCH----HHHHHHHHHHHHCCCeeeeC
Confidence 4689999999999988 99999999999999999987
No 354
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=87.41 E-value=0.54 Score=31.36 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ |..+||+.+|++. ..+.+.|+.|.+.|++....
T Consensus 21 g~~lps~~~la~~~~vsr----~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 21 GDRLPSERELAERYGVSR----TTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp TSBE--HHHHHHHHTS-H----HHHHHHHHHHHHTTSEEEET
T ss_pred CCEeCCHHHHHHHhccCC----cHHHHHHHHHHHCCcEEEEC
Confidence 3567 9999999999976 89999999999999999887
No 355
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.34 E-value=0.98 Score=37.84 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCceEEEeeCCccHHH---HHHHHHC-CCCeEEEeec--hHHHhhCCC----CCCeEEEEccCCC
Q 046375 164 SLKSLVDVAGGIGGLI---SEIVKSY-PHIKGINFDL--PHVITTAPV----YDGVTHVSGDMFH 218 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~---~~l~~~~-p~l~~~~~Dl--p~~~~~a~~----~~ri~~~~~d~~~ 218 (276)
++..|+++|--.|.-+ ..+++.. ++.+++++|+ +.--..+.+ .+||+++.||-.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 5899999996665544 4556666 8889999998 221122222 5899999999876
No 356
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=87.32 E-value=0.59 Score=32.44 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 7 AIELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 7 a~~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..++.+++.|..+ ..+++..+|+..+|.++ +.+...++.|...|++.+..
T Consensus 2 ~~~~~~Le~I~rsR~~Gi~q~~L~~~~~~D~----r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 2 DIQYCLLERIARSRYNGITQSDLSKLLGIDP----RSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred chHHHHHHHHHhcCCCCEehhHHHHHhCCCc----hHHHHHHHHHHHCCCEEEEE
Confidence 3456677788753 26799999999999976 99999999999999999877
No 357
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=1.7 Score=39.53 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHH----CC----CCeEEEeec-hHHH
Q 046375 132 DQQFNKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS----YP----HIKGINFDL-PHVI 200 (276)
Q Consensus 132 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~p----~l~~~~~Dl-p~~~ 200 (276)
-|+..+.|-+.++.+-. + ..+.+. .+.+..+|++|+|.|.++.-+++. +| .+++.+++. |...
T Consensus 51 Apels~lFGella~~~~---~-~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 51 APELSQLFGELLAEQFL---Q-LWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred chhHHHHHHHHHHHHHH---H-HHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 47788888777754322 2 222333 456789999999999998766654 45 567888887 5544
No 358
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=87.17 E-value=0.72 Score=39.27 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=49.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-cccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVT 80 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~ 80 (276)
+.|...|...-....-.|||..+|+++ .++...++-|+..|++...+ .++|.+|..+. ++.+
T Consensus 13 fqIL~ei~~~qp~v~q~eIA~~lgiT~----QaVsehiK~Lv~eG~i~~~g-----R~~Y~iTkkG~e~l~~ 75 (260)
T COG1497 13 FQILSEIAVRQPRVKQKEIAKKLGITL----QAVSEHIKELVKEGLIEKEG-----RGEYEITKKGAEWLLE 75 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCH----HHHHHHHHHHHhccceeecC-----CeeEEEehhHHHHHHH
Confidence 334444443214579999999999988 99999999999999999977 57999999985 5543
No 359
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.11 E-value=0.67 Score=42.39 Aligned_cols=71 Identities=14% Similarity=0.319 Sum_probs=51.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec---hHHHhhCCC-------------CCCeEEEEccCCCC------
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL---PHVITTAPV-------------YDGVTHVSGDMFHT------ 219 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl---p~~~~~a~~-------------~~ri~~~~~d~~~~------ 219 (276)
......++|+|+|.|.....++...-...-+++++ |.-+..... ...++.+.|+|..|
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56778999999999999888777655545566654 554443322 34588899999884
Q ss_pred CCCccEEEEcccc
Q 046375 220 IPNADALLLKWVL 232 (276)
Q Consensus 220 ~p~~D~i~l~~vl 232 (276)
.+.+++|+.+++.
T Consensus 270 ~~eatvi~vNN~~ 282 (419)
T KOG3924|consen 270 QTEATVIFVNNVA 282 (419)
T ss_pred hhcceEEEEeccc
Confidence 3469999999985
No 360
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=87.00 E-value=0.5 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPS 36 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~ 36 (276)
++..|...|..+ +..+..+||+.+|+++
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~ 31 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLSE 31 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-H
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcCH
Confidence 466788999886 7899999999999976
No 361
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=86.99 E-value=0.8 Score=42.30 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=52.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCC--------CCCeEEEEccCCCC----CC---CccEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHI-KGINFDL-PHVITTAPV--------YDGVTHVSGDMFHT----IP---NADAL 226 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l-~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~~----~p---~~D~i 226 (276)
+.++|||+=|=+|.++...+.. +. ++|.+|+ ...++.+++ .+++.++.+|.|+- .. .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4799999999999999999986 45 7899999 667777665 57899999999982 12 39999
Q ss_pred EE
Q 046375 227 LL 228 (276)
Q Consensus 227 ~l 228 (276)
++
T Consensus 295 il 296 (393)
T COG1092 295 IL 296 (393)
T ss_pred EE
Confidence 87
No 362
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=86.89 E-value=0.43 Score=45.11 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=57.6
Q ss_pred HHHHcChhhhhhhCCCC-CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccccCCC
Q 046375 6 CAIELRIPDIIHSHGGP-ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVTGSD 83 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~-~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~~~~ 83 (276)
++.+..|+..|... ++ .+.++||+.+|+++ ..+.+.+..|.+.|+++.... ....|.+|+.+. ++..+.|
T Consensus 2 ~~~e~~iL~~l~~~-~~~~~~~~la~~~g~~~----~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 2 AMAEEALLGALSNN-EEISDSGQFAASHGLDH----NEVVGVIKSLHGFRYVDAQDI---KRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred chHHHHHHHHHHhc-CCCCCHHHHHHHcCCCH----HHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCH
Confidence 35677888888875 44 89999999999966 899999999999999887653 145799999997 6776766
Q ss_pred C
Q 046375 84 S 84 (276)
Q Consensus 84 ~ 84 (276)
.
T Consensus 74 E 74 (492)
T PLN02853 74 E 74 (492)
T ss_pred H
Confidence 4
No 363
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=86.63 E-value=0.64 Score=40.30 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=41.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|.+.|.+. +.+++.|||+.+++++ .-++|-|..|...|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~vS~----~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 8 DAIIELVKQQ-GYVSTEELVEHFSVSP----QTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHc-CCEeHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 4577888876 7899999999999977 89999999999999999987
No 364
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=86.58 E-value=2.4 Score=31.74 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=49.6
Q ss_pred EEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-C--CC---eEEEEccCCC---CCC---CccEEEEccccc
Q 046375 168 LVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV-Y--DG---VTHVSGDMFH---TIP---NADALLLKWVLH 233 (276)
Q Consensus 168 vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~-~--~r---i~~~~~d~~~---~~p---~~D~i~l~~vlh 233 (276)
++|+|||.|... .+....+. ..++++|. +.++...+. . .. +.+..+|... +++ .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 44444443 36777887 666655332 1 11 5778888764 444 38999 555544
Q ss_pred CCCccccccCHHHHHHhHhhCC
Q 046375 234 NWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 234 ~~~~~~~~rt~~e~~~ll~~aG 255 (276)
.+.+ ..+...++...+...|
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g 149 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGG 149 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCc
Confidence 4433 3233444444444444
No 365
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=86.52 E-value=0.86 Score=36.87 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 23 ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 23 ~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
.|.++||+.+|++. +.+.|.+..|...+++.+.. .|.|.++|.
T Consensus 76 ~t~~~ia~~l~iS~----~Tv~r~ik~L~e~~iI~k~~-----~G~Y~iNP~ 118 (165)
T PF05732_consen 76 ATQKEIAEKLGISK----PTVSRAIKELEEKNIIKKIR-----NGAYMINPN 118 (165)
T ss_pred eeHHHHHHHhCCCH----HHHHHHHHHHHhCCcEEEcc-----CCeEEECcH
Confidence 58999999999976 89999999999999999987 589999885
No 366
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=86.26 E-value=0.78 Score=38.49 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=36.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
|.+.|...+.+.|++|+|+++|++- -..+|.|.+|++.|++...
T Consensus 163 i~~~~~~~~~~~Taeela~~~giSR----vTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGISR----VTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCccH----HHHHHHHHHHHhcCeeeEE
Confidence 4455553337899999999999965 8999999999999999864
No 367
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=85.93 E-value=5.3 Score=33.90 Aligned_cols=109 Identities=9% Similarity=0.085 Sum_probs=71.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-h----HHHhhCCCCCCeEEEEccCCCC------CCCccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-P----HVITTAPVYDGVTHVSGDMFHT------IPNADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p----~~~~~a~~~~ri~~~~~d~~~~------~p~~D~i~l~ 229 (276)
+....+||-+|..+|.....+..-.. +-.+.+++. | +.+..+++..+|--+-.|...| .+..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 56789999999999999999888764 778888887 4 4556666688898888899875 2348887653
Q ss_pred ccccCCCcccc--------------------------c--c----CHHHHHHhHhhCCCCceEEEecCC---ccEEEEEe
Q 046375 230 WVLHNWSDEAC--------------------------E--R----TELEWKNIPEKGGSPRYRIIKIPA---LQCIIESY 274 (276)
Q Consensus 230 ~vlh~~~~~~~--------------------------~--r----t~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~a~ 274 (276)
-. . ++|+ . . ...+-.+.|++.||+..+...+.+ .+.++.++
T Consensus 151 Va---Q-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 151 VA---Q-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -S---S-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred CC---C-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 21 1 1222 0 1 133445667788999999888854 46666664
No 368
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=85.62 E-value=0.98 Score=37.40 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
++|-.+||+.+|+++ ..+.|+|+.|...|++...+ +.+.+.
T Consensus 168 ~~t~~~lA~~lG~tr----~tvsR~l~~l~~~gii~~~~------~~i~i~ 208 (211)
T PRK11753 168 KITRQEIGRIVGCSR----EMVGRVLKMLEDQGLISAHG------KTIVVY 208 (211)
T ss_pred CCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEecC------CEEEEe
Confidence 789999999999987 89999999999999999877 556543
No 369
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=85.58 E-value=0.99 Score=36.74 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
|+|-+|||+.+|+++ ..+.|.|+.|...|++.... +...+.
T Consensus 143 ~~t~~~iA~~lG~tr----etvsR~l~~l~~~g~I~~~~------~~i~I~ 183 (193)
T TIGR03697 143 RLSHQAIAEAIGSTR----VTITRLLGDLRKKKLISIHK------KKITVH 183 (193)
T ss_pred CCCHHHHHHHhCCcH----HHHHHHHHHHHHCCCEEecC------CEEEEe
Confidence 689999999999987 99999999999999999887 666554
No 370
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=85.58 E-value=0.88 Score=39.83 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=42.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
...|.+.|... +.+++.|||+.+++++ .-++|=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~VS~----~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGVST----VTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCCCH----HHHHHHHHHHHhCCCeEEEe
Confidence 34678888876 6899999999999987 89999999999999999987
No 371
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=85.41 E-value=0.9 Score=39.45 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=41.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|.+.|.+. +.+++.|||+.+++++ .-++|=|..|...|++.+..
T Consensus 8 ~~Il~~L~~~-~~v~v~eLa~~l~VS~----~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 8 AAILEYLQKQ-GKTSVEELAQYFDTTG----TTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHc-CCEEHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEEE
Confidence 4578888876 7899999999999987 89999999999999999887
No 372
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=85.33 E-value=1.2 Score=30.63 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=38.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
..|...|+. +..|.+||-+.+|++. .-+...|.-|...|++.+.
T Consensus 8 ~~IL~~ls~--~c~TLeeL~ekTgi~k----~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 8 QKILIILSK--RCCTLEELEEKTGISK----NTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHHh--ccCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeee
Confidence 345666776 6899999999999976 8999999999999999987
No 373
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=85.22 E-value=0.83 Score=36.90 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+|+|++||++++|++- +.++.-++-|...|+|.+.-
T Consensus 39 ~~Pmtl~Ei~E~lg~Sk----s~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 39 RKPLTLDEIAEALGMSK----SNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCCccHHHHHHHHCCCc----chHHHHHHHHHhcchHHhhh
Confidence 38999999999999976 99999999999999999875
No 374
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=85.08 E-value=0.57 Score=34.47 Aligned_cols=48 Identities=8% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHcChhhhhhh---CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 8 IELRIPDIIHS---HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 8 ~~l~lf~~L~~---~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
+.-.|++.|.. ...++++++|++++++++ .-++..|+.|...|++-..
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~----~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSE----NEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS-H----HHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCcCH----HHHHHHHHHHHhCCeEecc
Confidence 34567777776 226799999999999977 9999999999999987644
No 375
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=84.99 E-value=0.71 Score=43.81 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccccCCCC
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVTGSDS 84 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~~~~~ 84 (276)
...+..|+..|...++..+..+||+.+|+++ ..+.+.+..|.+.|+++.... ....|.+|+.+. ++..+.|.
T Consensus 5 ~~~e~~iL~~l~~~~~~~~~~~la~~~~~~~----~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 5 ELEENTILSKLESENEIVNSLALAESLNIDH----QKVVGAIKSLESANYITTEMK---KSNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHcCCCH----HHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCHH
Confidence 3566778888886325799999999999965 899999999999999887653 145799999997 77777764
No 376
>PRK05638 threonine synthase; Validated
Probab=84.85 E-value=1.2 Score=41.96 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=48.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcC--CCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSID--SPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~--~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
.++.|+..|.+ ++.+.-||++.++ +++ ..+.+.|+.|...|+++.... ++..-.|++|+.+.
T Consensus 372 ~r~~IL~~L~~--~~~~~~el~~~l~~~~s~----~~v~~hL~~Le~~GLV~~~~~-~g~~~~Y~Lt~~g~ 435 (442)
T PRK05638 372 TKLEILKILSE--REMYGYEIWKALGKPLKY----QAVYQHIKELEELGLIEEAYR-KGRRVYYKLTEKGR 435 (442)
T ss_pred hHHHHHHHHhh--CCccHHHHHHHHcccCCc----chHHHHHHHHHHCCCEEEeec-CCCcEEEEECcHHH
Confidence 36778889987 7999999999998 655 899999999999999986410 11123588998775
No 377
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=84.37 E-value=0.86 Score=30.46 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=38.2
Q ss_pred hhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 14 DIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 14 ~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
--|... .+++.+++.++.|.+- .......+..+...|+++.++ +++++|+.+.
T Consensus 13 ~~LR~~-~Gi~~~~~~~~~g~~~---~~~~~~~l~~l~~~Gll~~~~------~~l~lT~~G~ 65 (66)
T PF06969_consen 13 LGLRCN-EGIDLSEFEQRFGIDF---AEEFQKELEELQEDGLLEIDG------GRLRLTEKGR 65 (66)
T ss_dssp HHHHHH-SEEEHHHHHHHTT--T---HHH-HHHHHHHHHTTSEEE-S------SEEEE-TTTG
T ss_pred HHHHhH-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHHCCCEEEeC------CEEEECcccC
Confidence 334433 5799999999999864 145578899999999999998 9999999764
No 378
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=84.31 E-value=1.2 Score=37.74 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=37.7
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
|+|.++||+.+|+++ ..+.|+|..|...|++...+ +++.+..
T Consensus 184 ~lt~~~iA~~lG~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i~d 225 (235)
T PRK11161 184 TMTRGDIGNYLGLTV----ETISRLLGRFQKSGMLAVKG------KYITIEN 225 (235)
T ss_pred cccHHHHHHHhCCcH----HHHHHHHHHHHHCCCEEecC------CEEEEcC
Confidence 689999999999987 89999999999999999988 6776654
No 379
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=84.31 E-value=1.3 Score=36.52 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=37.0
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|-++||..+|+++ ..+.|+|.-|...|++...+ +.+.+..
T Consensus 148 ~~~t~~~iA~~lG~tr----etvsR~l~~l~~~g~I~~~~------~~i~I~d 190 (202)
T PRK13918 148 IYATHDELAAAVGSVR----ETVTKVIGELSREGYIRSGY------GKIQLLD 190 (202)
T ss_pred ecCCHHHHHHHhCccH----HHHHHHHHHHHHCCCEEcCC------CEEEEEC
Confidence 3689999999999987 89999999999999999765 6666543
No 380
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=84.28 E-value=1.3 Score=38.17 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=40.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|.+.|.+. +..+++|||+.+++++ .-++|-|..|...|.+.+..
T Consensus 7 ~~Il~~l~~~-~~~~~~eLa~~l~VS~----~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 7 QAIVDLLLNH-TSLTTEALAEQLNVSK----ETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEec
Confidence 4577888776 7999999999999987 89999999999999998876
No 381
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=83.77 E-value=12 Score=32.81 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeech-HH-------Hhh---CCC--------------------------
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLP-HV-------ITT---APV-------------------------- 205 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp-~~-------~~~---a~~-------------------------- 205 (276)
....+||-=|||-|.++-.++++ +-.+.+-|.. .| +.. .++
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34689999999999999999998 4455666641 11 121 111
Q ss_pred ----------CCCeEEEEccCCC--CCC----CccEEEEcccccCCCcccc-----------------------------
Q 046375 206 ----------YDGVTHVSGDMFH--TIP----NADALLLKWVLHNWSDEAC----------------------------- 240 (276)
Q Consensus 206 ----------~~ri~~~~~d~~~--~~p----~~D~i~l~~vlh~~~~~~~----------------------------- 240 (276)
.++++...|||.+ +-+ .+|+|+.++.+.--.+--.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 3578999999987 333 3899987766522111000
Q ss_pred -------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 241 -------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 241 -------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
|-+.+|+..+.+..||++++...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 23789999999999999877544
No 382
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=83.76 E-value=1.4 Score=39.42 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=43.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
...|.+.|.+. .+.+.++||+.+|++. ..+.+.++.|...|++..... ...|++.+.
T Consensus 6 ~~~il~~L~~~-~~~s~~~LA~~lgvsr----~tV~~~l~~L~~~G~~i~~~~----~~Gy~L~~~ 62 (319)
T PRK11886 6 MLQLLSLLADG-DFHSGEQLGEELGISR----AAIWKHIQTLEEWGLDIFSVK----GKGYRLAEP 62 (319)
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCceEEec----CCeEEecCc
Confidence 34577777763 6799999999999977 999999999999999443321 135887554
No 383
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.27 E-value=2.2 Score=37.94 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeechHHHhhCCC----C-----CCeEEEEccCCC-CCC------Cc---
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDLPHVITTAPV----Y-----DGVTHVSGDMFH-TIP------NA--- 223 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dlp~~~~~a~~----~-----~ri~~~~~d~~~-~~p------~~--- 223 (276)
+..+||=+|||-=.-+-++- .| ++++.-+|+|++++.=++ . .++++++.|+++ ++| ++
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 46899999998554444433 34 477788888999975332 2 389999999995 333 23
Q ss_pred --cEEEEcccccCCCcccc
Q 046375 224 --DALLLKWVLHNWSDEAC 240 (276)
Q Consensus 224 --D~i~l~~vlh~~~~~~~ 240 (276)
-++++--++-++++++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v 188 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAV 188 (297)
T ss_pred CCeEEEeccccccCCHHHH
Confidence 37778888888888776
No 384
>PF13730 HTH_36: Helix-turn-helix domain
Probab=83.11 E-value=1 Score=28.88 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=27.2
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCce
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNIF 56 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll 56 (276)
|.+.||+.+|++. +.+.+.++.|...|++
T Consensus 27 S~~~la~~~g~s~----~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSR----RTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCH----HHHHHHHHHHHHCcCC
Confidence 8999999999976 9999999999999985
No 385
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=82.97 E-value=1.7 Score=35.49 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=53.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------CCCeEEEEccCCCC-----C------CC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV---------YDGVTHVSGDMFHT-----I------PN 222 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~---------~~ri~~~~~d~~~~-----~------p~ 222 (276)
++..+||-+|||-=...-++...+++++++-+|+|++++.-++ ..++++++.|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 3556999999999999999999888999999999999865443 12366799999861 1 12
Q ss_pred -ccEEEEcccccCCCcccc
Q 046375 223 -ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 -~D~i~l~~vlh~~~~~~~ 240 (276)
.-++++=-|+.++++++.
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~ 175 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQV 175 (183)
T ss_dssp SEEEEEEESSGGGS-HHHH
T ss_pred CCeEEEEcchhhcCCHHHH
Confidence 457777777888866543
No 386
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=82.40 E-value=3.8 Score=39.08 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=63.5
Q ss_pred cchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccccC-CCCCceEEEeeCCccHHHHHHHHH----CCCCeEEEeec-h
Q 046375 124 AYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKHG-FDSLKSLVDVAGGIGGLISEIVKS----YPHIKGINFDL-P 197 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p~l~~~~~Dl-p 197 (276)
..|+.++++|-.-..|++|+ ..++++..+.. -.....|+-+|+|.|=+..+.++. .-.++.++++= |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 35777788887666677765 23444444311 122577889999999888665543 23445677775 6
Q ss_pred HHHhhCCC------CCCeEEEEccCCC-CCC--CccEEE
Q 046375 198 HVITTAPV------YDGVTHVSGDMFH-TIP--NADALL 227 (276)
Q Consensus 198 ~~~~~a~~------~~ri~~~~~d~~~-~~p--~~D~i~ 227 (276)
.++-.... .+||+++..|+.+ +-| ++|+++
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH
Confidence 65543332 7899999999988 333 489874
No 387
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=82.38 E-value=1.4 Score=38.26 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=41.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
-.|.++|.+. |.++++|||+.+++++ .-++|=|+.|...|+|.+..
T Consensus 8 ~~Il~~l~~~-g~v~v~eLa~~~~VS~----~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 8 QKILELLKEK-GKVSVEELAELFGVSE----MTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHc-CcEEHHHHHHHhCCCH----HHHHHhHHHHHHCCcEEEEe
Confidence 3578888887 7899999999999987 89999999999999999976
No 388
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.30 E-value=2.3 Score=37.09 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-----CCCeEEEeech
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-----PHIKGINFDLP 197 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~l~~~~~Dlp 197 (276)
+.....++|+|||.|.++..+.+.. +..+++++|+.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4567899999999999999999998 56789999983
No 389
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=82.21 E-value=2.1 Score=37.55 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhcC--CCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 21 GPITSSQIASSID--SPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 21 ~~~t~~eLA~~~~--~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+..+.++||+.++ ++. .-++.-|+.|...|++++++ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~is~----~ev~~sL~~L~~~glikk~~-----~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPKISA----EQVKESLDLLERLGLIKKNE-----DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCCCCH----HHHHHHHHHHHHCCCeeECC-----CCcEEeecce
Confidence 4448999999998 544 78999999999999999988 5889998864
No 390
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=81.46 E-value=1.9 Score=40.65 Aligned_cols=53 Identities=13% Similarity=0.354 Sum_probs=40.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
|-..|.. ||.|+.|||+.+|++. ..+.+.|..| .|+|...++ |..-+|+++..
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~sq----~~~s~~L~~L--~~~V~~~~~--gr~~~Y~l~~~ 57 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGVSQ----ATLSRLLAAL--GDQVVRFGK--ARATRYALLRP 57 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCCCH----HHHHHHHHHh--hcceeEecc--CceEEEEeccc
Confidence 4456666 8999999999999965 9999999999 888888873 11224776653
No 391
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=81.29 E-value=0.55 Score=31.82 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=42.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+-.|.+.|...| +.++-.||...|+.- ...-+.+.|+.|...|.|.+.+. .+-.|+++.
T Consensus 5 ~ee~Il~~L~~~g-~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~~---~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELG-GSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEGG---TPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHT-SSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEECS---SSTEEEE-H
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCCC---CCCceEecc
Confidence 5667888898764 555555555555431 23899999999999999998762 356777764
No 392
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=81.21 E-value=1.6 Score=36.64 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|+..+.....+.|.+|||+++++++ .-++..+..|+..|++...-
T Consensus 167 Vl~~~~~g~~g~s~~eIa~~l~iS~----~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 167 VRKLFKEPGVQHTAETVAQALTISR----TTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHcCCCCcCHHHHHHHhCccH----HHHHHHHHHHHhCCeEEEEe
Confidence 4555554112689999999999987 89999999999999999765
No 393
>PRK09954 putative kinase; Provisional
Probab=81.20 E-value=1.4 Score=40.06 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=44.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.+|+..|.++ +++|..|||+.++++. ..+.+.++.|...|++.. ..|.+++..
T Consensus 5 ~~~il~~l~~~-~~~s~~~la~~l~~s~----~~v~~~i~~L~~~g~i~~--------~~~~l~~~~ 58 (362)
T PRK09954 5 EKEILAILRRN-PLIQQNEIADILQISR----SRVAAHIMDLMRKGRIKG--------KGYILTEQE 58 (362)
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCcCC--------cEEEEcCCc
Confidence 45688888886 6899999999999977 999999999999999842 347776543
No 394
>PRK11642 exoribonuclease R; Provisional
Probab=80.95 E-value=2.3 Score=43.19 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=45.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.|++.|...+.|++..+|+++++++...+...+.+.|+.|...|.+.+.. .+.|.+..
T Consensus 23 ~Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~-----~~~~~~~~ 80 (813)
T PRK11642 23 FILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR-----RQCYALPE 80 (813)
T ss_pred HHHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC-----CceEecCC
Confidence 46777765448999999999999974223456999999999999998876 36676653
No 395
>PF13518 HTH_28: Helix-turn-helix domain
Probab=80.89 E-value=1.7 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=26.5
Q ss_pred CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 23 ITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 23 ~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
.|+.++|+.+|+++ ..+.+|++..-..|+
T Consensus 13 ~s~~~~a~~~gis~----~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGISR----STVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCCCH----hHHHHHHHHHHhcCH
Confidence 39999999999977 999999999998885
No 396
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=80.88 E-value=2.2 Score=32.26 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=36.2
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|.+... .|.|++|||..+++|- ..++-++.-|...|++....
T Consensus 48 Il~lC~---~~~SVAEiAA~L~lPl----gVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 48 ILELCR---RPLSVAEIAARLGLPL----GVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHC---CCccHHHHHHhhCCCc----hhhhhhHHHHHhCCCEEEeC
Confidence 444444 5999999999999998 89999999999999998776
No 397
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=80.73 E-value=1.6 Score=31.72 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhc
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGH 52 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~ 52 (276)
.+.+++|+..|-. ++.|-.|||+.+|++. ..+.|+=+.|-.
T Consensus 41 l~~R~~i~~~Ll~--~~~tQrEIa~~lGiS~----atIsR~sn~lk~ 81 (94)
T TIGR01321 41 LGDRIRIVNELLN--GNMSQREIASKLGVSI----ATITRGSNNLKT 81 (94)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCCCh----hhhhHHHhhccc
Confidence 5678999998876 7899999999999976 788888777653
No 398
>PRK12423 LexA repressor; Provisional
Probab=80.66 E-value=2.5 Score=35.31 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred cChhhhhhh----CCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHS----HGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~----~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|++.|.. .+-+-|..|||+++|+ ++ ..+...|+.|...|+|+...
T Consensus 9 ~~il~~l~~~i~~~g~~Ps~~eia~~~g~~s~----~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 9 AAILAFIRERIAQAGQPPSLAEIAQAFGFASR----SVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCh----HHHHHHHHHHHHCCCEEecC
Confidence 345555543 2235699999999995 55 78999999999999999987
No 399
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=80.43 E-value=3.1 Score=33.71 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
-+.-|++.|....+++|++||.+.+.- .+.++..-+.|.|+.|+..|+|.+..
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 345678888765579999999998843 12335689999999999999999986
No 400
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=80.22 E-value=0.98 Score=28.30 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=23.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
++.+...+.+ +.|..+||+.+|+++ ..+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgvs~----~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGVSR----STVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS-H----HHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCcCH----HHHHHHHHHcccccc
Confidence 4455556664 699999999999987 999999998877774
No 401
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=80.15 E-value=2.4 Score=37.47 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=48.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCCC---C---CCccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFHT---I---PNADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~~---~---p~~D~i~l 228 (276)
+.++|||+=|=+|.++...+.. .-.+++.+|. ...++.+++ .++++++..|+++- + ..||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987764 3346999998 777776665 47899999999872 1 24999987
No 402
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=80.14 E-value=2.9 Score=31.89 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=45.4
Q ss_pred hhhhhhCCCCCCHHHHHhhcC-CCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccccc
Q 046375 13 PDIIHSHGGPITSSQIASSID-SPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWLV 79 (276)
Q Consensus 13 f~~L~~~~~~~t~~eLA~~~~-~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l~ 79 (276)
.-.|.. |+....||-+.++ +++ ..|.+=|+.|...|++.+..-.+.. .-.|++|+.+..|.
T Consensus 29 l~~L~~--g~~RF~eL~r~i~~Is~----k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 29 LRDLFD--GPKRFNELRRSIGGISP----KMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred HHHHhc--CCCcHHHHHHHccccCH----HHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 344444 7999999999998 977 9999999999999999998621000 11488888765444
No 403
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=79.89 E-value=1.4 Score=29.43 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=35.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
.+++.|-.. |+.|+.+|++.+++++ +.++.-|-.|...|++...
T Consensus 17 ~V~~~Ll~~-G~ltl~~i~~~t~l~~----~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 17 KVGEVLLSR-GRLTLREIVRRTGLSP----KQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHHC--SEEHHHHHHHHT--H----HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCCCH----HHHHHHHHHHHHcCCeeee
Confidence 466777665 7999999999999987 9999999999999998754
No 404
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=79.84 E-value=2 Score=36.21 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=36.5
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+.|-++||+.+|+++ ..+.|.|..|...|+++..+ +++.+.
T Consensus 169 ~~t~~~lA~~lG~sr----etvsR~L~~L~~~G~I~~~~------~~i~I~ 209 (226)
T PRK10402 169 HEKHTQAAEYLGVSY----RHLLYVLAQFIQDGYLKKSK------RGYLIK 209 (226)
T ss_pred cchHHHHHHHHCCcH----HHHHHHHHHHHHCCCEEeeC------CEEEEe
Confidence 468899999999987 99999999999999999987 667664
No 405
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=79.63 E-value=2.3 Score=30.67 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 44 ERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 44 ~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
.=-+..|...|++++.. .|.|++|+.++.+
T Consensus 58 ~Wa~~~L~~aGli~~~~-----rG~~~iT~~G~~~ 87 (92)
T PF14338_consen 58 RWARSYLKKAGLIERPK-----RGIWRITEKGRKA 87 (92)
T ss_pred HHHHHHHHHCCCccCCC-----CCceEECHhHHHH
Confidence 33467899999999977 5999999999743
No 406
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=79.42 E-value=2.6 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=33.2
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.-+|..++++.+|+++ ..+.+.+..|+.+|++.+.+
T Consensus 53 d~Is~sq~~e~tg~~~----~~V~~al~~Li~~~vI~~~g 88 (100)
T PF04492_consen 53 DRISNSQIAEMTGLSR----DHVSKALNELIRRGVIIRDG 88 (100)
T ss_pred ceeeHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeCC
Confidence 4689999999999987 89999999999999998877
No 407
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=79.42 E-value=2.4 Score=36.30 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=40.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|++.|....+.++..+||+++|+++ ..+.+-++.|.+.|+++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGVSR----s~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGITR----SVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecc
Confidence 57888876336899999999999987 89999999999999998765
No 408
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=79.40 E-value=1 Score=37.13 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=40.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|.+.|... +.+++.+||+.+|+++ .-++|=|+.|...|++.+..
T Consensus 10 ~~Il~~l~~~-~~~~~~~La~~~~vS~----~TiRRDl~~L~~~g~~~r~~ 55 (185)
T PRK04424 10 KALQELIEEN-PFITDEELAEKFGVSI----QTIRLDRMELGIPELRERIK 55 (185)
T ss_pred HHHHHHHHHC-CCEEHHHHHHHHCcCH----HHHHHHHHHHhcchHHHHHH
Confidence 3567888876 7899999999999987 89999999999999998865
No 409
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=79.36 E-value=2.5 Score=35.85 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|-++||+.+|+++ ..+.|+|+.|...|++...+ .+++.+..
T Consensus 179 ~lt~~~IA~~lGisr----etlsR~L~~L~~~GlI~~~~-----~~~i~I~D 221 (230)
T PRK09391 179 PMSRRDIADYLGLTI----ETVSRALSQLQDRGLIGLSG-----ARQIELRN 221 (230)
T ss_pred cCCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEEecC-----CceEEEcC
Confidence 689999999999987 89999999999999998764 14666543
No 410
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.29 E-value=3.3 Score=35.74 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=25.7
Q ss_pred CceEEEeeCCccHHHHHHHHHCCC--------CeEEEeec-hHH
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPH--------IKGINFDL-PHV 199 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~--------l~~~~~Dl-p~~ 199 (276)
+.+|+++|+|+|.++.-+++.... ++++++|. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 589999999999999888776543 47899987 443
No 411
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=79.21 E-value=1.6 Score=30.46 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=23.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHh
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLG 51 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~ 51 (276)
|+..|.. |.|.|+++||..+|++. ..+...|..+-
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~~----e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWPV----EEVRAALAAMP 63 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT--H----HHHHHHHHH-T
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCCH----HHHHHHHHhCC
Confidence 6777887 58999999999999964 66666666554
No 412
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=78.67 E-value=1.1 Score=31.01 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA 58 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~ 58 (276)
...|.+|||+.+|+++ ..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGIS~----~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGRTE----QTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCcCH----HHHHHHHhcCcccchHHH
Confidence 4699999999999988 899999999988887654
No 413
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.40 E-value=2.6 Score=36.08 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=45.4
Q ss_pred HHHHhccccCCCC--CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------------CCCeEEEE
Q 046375 152 REILAGYKHGFDS--LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------------YDGVTHVS 213 (276)
Q Consensus 152 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------------~~ri~~~~ 213 (276)
+.++.++. +.. ..+|||.=+|-|.-+.-++.. +.++++++. |-+....+. ..||+++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34556654 333 349999999999999998865 678999998 443332221 36999999
Q ss_pred ccCCC--CCC--CccEEEEcccc
Q 046375 214 GDMFH--TIP--NADALLLKWVL 232 (276)
Q Consensus 214 ~d~~~--~~p--~~D~i~l~~vl 232 (276)
+|..+ +.+ .+|+|++==++
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 99887 333 49999884443
No 414
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=77.80 E-value=1.4 Score=33.38 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=47.7
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
+..+.-|++.|....++.|++||-+.+.- .+.++..-+.|-|+.|...|++.+... +++..+|....
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~-~~~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEF-GDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE-TTSEEEEEESS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEc-CCCcceEeecC
Confidence 34566788888875579999999998852 122345789999999999999999863 12233566654
No 415
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.60 E-value=0.42 Score=38.45 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=62.7
Q ss_pred CCceEEEeeCCccHHH-HHHHHHCCCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCCCC--C--C-CccEEE
Q 046375 164 SLKSLVDVAGGIGGLI-SEIVKSYPHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMFHT--I--P-NADALL 227 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~-~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~~--~--p-~~D~i~ 227 (276)
+..+|+++|||.-.++ ..++..-|...+-+-|= ...+...++ ..++.++..+.... + . .||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3588999999975555 56777778888888885 444433322 34555555555542 1 1 399999
Q ss_pred EcccccCCCcccc-----------------------ccCHHHHHHhHhhCCCCceE
Q 046375 228 LKWVLHNWSDEAC-----------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 228 l~~vlh~~~~~~~-----------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
+..++ .+++-.. -+|.+.+.+....+||++..
T Consensus 109 aADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eccch-hHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 98886 2322111 14788888999999988654
No 416
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.14 E-value=7.8 Score=33.02 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHH-------hhCCCCCCeEEEEccCCC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVI-------TTAPVYDGVTHVSGDMFH 218 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~-------~~a~~~~ri~~~~~d~~~ 218 (276)
.-++++++|||.=+|+-+.+.+.+.|. .+++.+|. +... +.+.....|+++.|+..+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 345899999999999999999999976 46788887 3333 333337789999998876
No 417
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=77.12 E-value=2 Score=26.54 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=19.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHH
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMR 48 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~ 48 (276)
+...+.. | .|+.+||+.+|++. .-+.|+|+
T Consensus 14 i~~l~~~--G-~si~~IA~~~gvsr----~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAE--G-MSIAEIAKQFGVSR----STVYRYLN 43 (45)
T ss_dssp HHHHHHT--T---HHHHHHHTTS-H----HHHHHHHC
T ss_pred HHHHHHC--C-CCHHHHHHHHCcCH----HHHHHHHh
Confidence 3444443 4 99999999999965 77777764
No 418
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=76.96 E-value=2.4 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGH 52 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~ 52 (276)
.+.++++||..+|+++ ..+.|.++....
T Consensus 7 ~~~~l~~iA~~~g~S~----~~f~r~Fk~~~g 34 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSP----SYFSRLFKKETG 34 (42)
T ss_dssp SS--HHHHHHHHTS-H----HHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHC
Confidence 5799999999999976 899998887654
No 419
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=76.86 E-value=3.4 Score=31.75 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 23 ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 23 ~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
-|+.|||..+|++| .-++|-.+-|...|++....
T Consensus 36 PSvRelA~~~~VNp----nTv~raY~eLE~eG~i~t~r 69 (125)
T COG1725 36 PSVRELAKDLGVNP----NTVQRAYQELEREGIVETKR 69 (125)
T ss_pred CcHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 49999999999999 89999999999999999887
No 420
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=75.90 E-value=3.5 Score=31.53 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=48.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+.|+.+.++|=.. +|.|+.||-+.+.-.......-+.-+|+-|+..|+|..... .+.|.-+|+
T Consensus 6 ~aE~eVM~ilW~~-~~~t~~eI~~~l~~~~ews~sTV~TLl~RL~KKg~l~~~kd----gr~~~y~pL 68 (123)
T COG3682 6 AAEWEVMEILWSR-GPATVREIIEELPADREWSYSTVKTLLNRLVKKGLLTRKKD----GRAFRYSPL 68 (123)
T ss_pred HHHHHHHHHHHHc-CCccHHHHHHHHhhcccccHHHHHHHHHHHHhccchhhhhc----CCeeeeecc
Confidence 4677888888666 79999999888865432244789999999999999999873 356776663
No 421
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=75.79 E-value=3.9 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=34.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
-|++.|-.+ +.+|-++||+.+|++. ..++++|..|...++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i~~----n~vRkiL~~L~ed~~ 44 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGIKQ----KQLRKILYLLYDEKL 44 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCCCH----HHHHHHHHHHHhhhc
Confidence 467777665 6899999999999977 899999999999444
No 422
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=75.50 E-value=5.4 Score=33.77 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 19 HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 19 ~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
.|.+++-.+||+.+|++. ..++.-|..|.+.|+|+..+ ...+..++.+
T Consensus 36 pG~~l~e~~La~~~gvSr----tPVReAL~rL~~eGlv~~~p-----~rG~~V~~~~ 83 (230)
T COG1802 36 PGERLSEEELAEELGVSR----TPVREALRRLEAEGLVEIEP-----NRGAFVAPLS 83 (230)
T ss_pred CCCCccHHHHHHHhCCCC----ccHHHHHHHHHHCCCeEecC-----CCCCeeCCCC
Confidence 358899999999999976 89999999999999999997 2445555554
No 423
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=75.49 E-value=4.8 Score=37.04 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHH----HHHHHHHC---CCCeEEEeechH
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGL----ISEIVKSY---PHIKGINFDLPH 198 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~----~~~l~~~~---p~l~~~~~Dlp~ 198 (276)
-+.|++.+. -.+..+|||+|-|.|.. ...|+++. |.+++|+++.|.
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~ 151 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPN 151 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCC
Confidence 356778776 55678999999999964 44555553 778999999843
No 424
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=75.34 E-value=2.7 Score=28.80 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=34.5
Q ss_pred hhhCCCCCCHHHH---HhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 16 IHSHGGPITSSQI---ASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 16 L~~~~~~~t~~eL---A~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+...++++.+.+| .+.+|+++ ..++.-|.-|+..|+|+.... |..-.|++|+.
T Consensus 14 ~~~~g~~i~~~~Li~ll~~~Gv~e----~avR~alsRl~~~G~L~~~r~--Gr~~~Y~Lt~~ 69 (70)
T PF07848_consen 14 LRPRGGWIWVASLIRLLAAFGVSE----SAVRTALSRLVRRGWLESERR--GRRSYYRLTER 69 (70)
T ss_dssp CCTTTS-EEHHHHHHHHCCTT--H----HHHHHHHHHHHHTTSEEEECC--CTEEEEEE-HH
T ss_pred hccCCCceeHHHHHHHHHHcCCCh----HHHHHHHHHHHHcCceeeeec--CccceEeeCCC
Confidence 3334466666655 45567876 899999999999999999982 11126998874
No 425
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=74.12 E-value=2.7 Score=37.20 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=49.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCC----------CCCeEEEEccCCC---CCC--Ccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIK-GINFDL-PHVITTAPV----------YDGVTHVSGDMFH---TIP--NAD 224 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~-~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~~p--~~D 224 (276)
.+.+++++-||||.|.+++...+. +.+. +..+|. ..+++..++ ..||.++.||=+. ..+ .+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998886 7765 566676 445544433 6899999998765 343 489
Q ss_pred EEEE
Q 046375 225 ALLL 228 (276)
Q Consensus 225 ~i~l 228 (276)
+|+.
T Consensus 198 Vii~ 201 (337)
T KOG1562|consen 198 VIIT 201 (337)
T ss_pred EEEE
Confidence 8875
No 426
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=73.97 E-value=4.6 Score=31.22 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhc----CCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSI----DSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~----~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|+.|+..|=.. ++.|+.||.+.+ +++. .-+..+|+-|...|+|.+..
T Consensus 5 ~E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~~~----tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 5 AEWEVMRVVWTL-GETTSRDIIRILAEKKDWSD----STIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhccCCcH----HHHHHHHHHHHHCCceeeec
Confidence 466677777554 689999977665 5644 89999999999999999775
No 427
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=73.50 E-value=5.3 Score=33.23 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..++-.+||+.+|++. ..++.-|..|...|+|+..+
T Consensus 32 G~~L~e~~La~~lgVSR----tpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 32 GAKLNESDIAARLGVSR----GPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CCEecHHHHHHHhCCCh----HHHHHHHHHHHHCCCEEEec
Confidence 46789999999999976 89999999999999999887
No 428
>PRK10736 hypothetical protein; Provisional
Probab=73.23 E-value=4.8 Score=36.97 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=42.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
.|++.|.. .|.++++|++++|++. ..+...|-.|.-.|++.+.. .++|+.-
T Consensus 312 ~v~~~l~~--~~~~iD~L~~~~~l~~----~~v~~~L~~LEl~G~v~~~~-----g~~~~~~ 362 (374)
T PRK10736 312 ELLANVGD--EVTPVDVVAERAGQPV----PEVVTQLLELELAGWIAAVP-----GGYVRLR 362 (374)
T ss_pred HHHHhcCC--CCCCHHHHHHHHCcCH----HHHHHHHHHHHhCCcEEEcC-----CcEEEEe
Confidence 46666664 6899999999999977 89999999999999999988 2556553
No 429
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=73.04 E-value=7.3 Score=32.74 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
|..++..+||+.+|++. ..++.-|+.|.+.|+|+..+. ..+...+.
T Consensus 28 G~~L~e~eLae~lgVSR----tpVREAL~~L~~eGlv~~~~~-----~G~~V~~~ 73 (224)
T PRK11534 28 DEKLRMSLLTSRYALGV----GPLREALSQLVAERLVTVVNQ-----KGYRVASM 73 (224)
T ss_pred CCcCCHHHHHHHHCCCh----HHHHHHHHHHHHCCCEEEeCC-----CceEeCCC
Confidence 56789999999999976 899999999999999998872 34555554
No 430
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=73.02 E-value=10 Score=33.26 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=45.7
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCC-CCCeEEEEccCCC----C-CCCccEEEEcccccCCC
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIK-GINFDL-PHVITTAPV-YDGVTHVSGDMFH----T-IPNADALLLKWVLHNWS 236 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~-~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~----~-~p~~D~i~l~~vlh~~~ 236 (276)
+++|+-||.|.+...+.+.. .+ +..+|. +..++..+. .+. .+..+|+.+ . .+.+|+++.+--.-.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 68999999999999998874 44 567887 666655544 222 256677766 2 34589998876544444
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.93 E-value=4.7 Score=31.78 Aligned_cols=66 Identities=14% Similarity=0.327 Sum_probs=47.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-+..|++.|..++++.|+++|=..+.- .|.++..-+.|-|+.|...|+|.+..- +++.-+|.++..
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~-~~~~~~y~~~~~ 88 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEF-EGGKTRYELNSE 88 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEe-CCCEEEEecCCC
Confidence 356788999876678999999888752 233345899999999999999999863 111223655554
No 432
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=72.82 E-value=3.6 Score=33.70 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 23 ITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 23 ~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|-.+||+.+ |+++ +.+.|.++.|+..|++.+.+
T Consensus 71 pSN~~La~r~~G~s~----~tlrR~l~~LveaGLI~rrD 105 (177)
T PF03428_consen 71 PSNAQLAERLNGMSE----RTLRRHLARLVEAGLIVRRD 105 (177)
T ss_pred cCHHHHHHHHcCCCH----HHHHHHHHHHHHCCCeeecc
Confidence 4789999999 9988 99999999999999999876
No 433
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=72.72 E-value=3.7 Score=29.46 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee-cCC-CCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA-QHP-SDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~-~~~-~~~~~~~y~~t~ 73 (276)
+..++..|-+.+|+|. +-+++.+.+|..+|+... ... .-++.|.|+++.
T Consensus 20 ~~~nvp~L~~~TGmPr----RT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~ 70 (90)
T PF09904_consen 20 GERNVPALMEATGMPR----RTIQDTIKALPELGIECEFVQDGERNNAGYYRISD 70 (90)
T ss_dssp S-B-HHHHHHHH---H----HHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE
T ss_pred CCccHHHHHHHhCCCH----hHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeee
Confidence 4559999999999998 999999999999997554 211 112456788754
No 434
>PRK09462 fur ferric uptake regulator; Provisional
Probab=72.21 E-value=5.3 Score=31.47 Aligned_cols=64 Identities=13% Similarity=0.312 Sum_probs=45.0
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 8 IELRIPDIIHSH-GGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 8 ~~l~lf~~L~~~-~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
-+.-|++.|... +++.|++||-+.+.- .|.++..-+.|.|+.|+..|++.+.... ++..+|.++
T Consensus 18 qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~-~~~~~y~~~ 83 (148)
T PRK09462 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFE-GGKSVFELT 83 (148)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-CCcEEEEeC
Confidence 455678888753 369999999988832 2233558999999999999999886521 122356653
No 435
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=71.97 E-value=5.4 Score=32.75 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=43.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++.+.|..+ +..|+.+||.++|++. .-+.|.|.-|...|.|...+ +++-+|..+-
T Consensus 17 ~~~~~l~~~-~~~~a~~i~~~l~~~k----~~vNr~LY~l~~~~~v~~~~---~~pp~w~~~~ 71 (183)
T PHA03103 17 KEVKNLGLG-EGITAIEISRKLNIEK----SEVNKQLYKLQREGMVYMSD---SNPPKWFKTT 71 (183)
T ss_pred HHHHHhccC-CCccHHHHHHHhCCCH----HHHHHHHHHHHhcCceecCC---CCCCCccccc
Confidence 345666664 7899999999999965 78999999999999998766 2455554444
No 436
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=71.75 E-value=6.5 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechH
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPH 198 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~ 198 (276)
+.+..+++|||.|.|+++.-+.-.| ++.+..+|-.+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 6688999999999999998887766 78899999743
No 437
>PRK01381 Trp operon repressor; Provisional
Probab=71.74 E-value=4.1 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHh
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLG 51 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~ 51 (276)
.+.+++|+..|.. |..|-.|||+.+|++- ..+.|--++|-
T Consensus 41 l~~R~~I~~~L~~--g~~sQREIa~~lGvSi----aTITRgsn~Lk 80 (99)
T PRK01381 41 LGTRVRIVEELLR--GELSQREIKQELGVGI----ATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHhCCce----eeehhhHHHhc
Confidence 5678999999987 7899999999999964 56666555554
No 438
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=71.60 E-value=7.1 Score=27.45 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=42.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRW 77 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~ 77 (276)
++..+.. .+.|=++||+.+|++. ..+...++.|...|+=..... ...|++......
T Consensus 11 ll~~~~~--~~~SGe~La~~LgiSR----taVwK~Iq~Lr~~G~~I~s~~----~kGY~L~~~~~l 66 (79)
T COG1654 11 LLLLLTG--NFVSGEKLAEELGISR----TAVWKHIQQLREEGVDIESVR----GKGYLLPQLPDL 66 (79)
T ss_pred HHHHcCC--CcccHHHHHHHHCccH----HHHHHHHHHHHHhCCceEecC----CCceeccCcccc
Confidence 4444443 6899999999999976 899999999999997555542 236888765443
No 439
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=71.47 E-value=6.6 Score=29.73 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=39.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
+-.+|.++ ||.+..+|++.++++ ....+|+- =.-|.+++.+ .|.|.||+.++
T Consensus 64 ~A~~L~~~-Gp~~~~~l~~~~~~~------~A~~IL~~-N~YGWFeRv~-----rGvY~LT~~G~ 115 (118)
T PF09929_consen 64 CAAALAEH-GPSRPADLRKATGVP------KATSILRD-NHYGWFERVE-----RGVYALTPAGR 115 (118)
T ss_pred HHHHHHHc-CCCCHHHHHHhcCCC------hHHHHHHh-Ccccceeeec-----cceEecCcchh
Confidence 33567765 899999999999994 45555543 2468999998 69999999875
No 440
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=71.26 E-value=13 Score=29.64 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCceEEEeeCCccHHH--HHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCC-CCCCccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLI--SEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFH-TIPNADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~--~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~-~~p~~D~i~l~ 229 (276)
..++||=||||.=..- ..|++. +.++++++ |+.++...+.++++.....+.+ .+.++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 4588888999976554 334453 45667765 4444443334456666555544 35578888774
No 441
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.25 E-value=15 Score=30.62 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=40.5
Q ss_pred CceEEEeeCCccHHHHH-HHHHCCCCeEEEeec---hHHHhhCCCCCCeEEEEccCCC-CCCCccEEEEc
Q 046375 165 LKSLVDVAGGIGGLISE-IVKSYPHIKGINFDL---PHVITTAPVYDGVTHVSGDMFH-TIPNADALLLK 229 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~-l~~~~p~l~~~~~Dl---p~~~~~a~~~~ri~~~~~d~~~-~~p~~D~i~l~ 229 (276)
.+++|=||||.-...+. .+.+ -+.++++++. ++..+.+ +..+|+++.+++.. .+.++|+|+++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK-AGAQLRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 46889999997665533 3333 3467777764 3333332 24589999988765 35678887764
No 442
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=71.22 E-value=4.5 Score=32.99 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=38.6
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+++.|.+. |-+|-++||+.+|+.. .-+.++|..|...|++....
T Consensus 22 ~v~~~l~~k-ge~tDeela~~l~i~~----~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 22 LVVDALLEK-GELTDEELAELLGIKK----NEVRRILYALYEDGLISYRK 66 (176)
T ss_pred HHHHHHHhc-CCcChHHHHHHhCccH----HHHHHHHHHHHhCCceEEEe
Confidence 367777764 4799999999999966 89999999999999999654
No 443
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=70.94 E-value=3 Score=36.79 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=33.4
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHH-HHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMR-LLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~-~L~~~Gll~~~~ 60 (276)
+++.+++++|+.+|+++ ..+.++++ .|+..|++...+
T Consensus 253 ~~~~~~~~ia~~lg~~~----~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGEDA----DTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCCCc----chHHHhhhHHHHHcCCcccCC
Confidence 36899999999999987 89999999 799999998666
No 444
>COG5340 Predicted transcriptional regulator [Transcription]
Probab=70.67 E-value=6.5 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+-+|+.|.|+..++.| ..++.++.-|...|+|++.. .|+|..-++
T Consensus 29 kiiTirdvae~~ev~~----n~lr~lasrLekkG~LeRi~-----rG~YlI~~l 73 (269)
T COG5340 29 KIITIRDVAETLEVAP----NTLRELASRLEKKGWLERIL-----RGRYLIIPL 73 (269)
T ss_pred ceEEeHHhhhhccCCH----HHHHHHHhhhhhcchhhhhc-----CccEEEeec
Confidence 6789999999999987 89999999999999999998 699998875
No 445
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=70.15 E-value=8.8 Score=33.84 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC----CCC-ccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT----IPN-ADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~----~p~-~D~i~l 228 (276)
.....+|||++++.|.=+..+++..+ ..+++..|. +.-+..+++ ...+.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45667899999999999999999998 567899997 665554433 56677777777652 233 899886
No 446
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=69.92 E-value=2.7 Score=27.60 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHh
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLG 51 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~ 51 (276)
-++.|++.|-.. +..|++|||+.+|+++ +.+..-+..|-
T Consensus 6 rq~~Ll~~L~~~-~~~~~~ela~~l~~S~----rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKN-KWITLKELAKKLNISE----RTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHH-TSBBHHHHHHHCTS-H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCcHHHHHHHHCCCH----HHHHHHHHHHH
Confidence 356678888764 7899999999999977 88888777765
No 447
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=69.81 E-value=15 Score=30.64 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHH-----------hhCCC--CCCeEEEEccCCC-CCCC-ccE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVI-----------TTAPV--YDGVTHVSGDMFH-TIPN-ADA 225 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~-----------~~a~~--~~ri~~~~~d~~~-~~p~-~D~ 225 (276)
+....+|+|+=.|.|+++.-+.... |.-.++.+=-.+.. ..+++ ..+++.+..+... ..|+ .|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 7778999999999999999888765 33333332111111 11111 2344444444444 3333 788
Q ss_pred EEEcccccCCCcccc------------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 226 LLLKWVLHNWSDEAC------------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 226 i~l~~vlh~~~~~~~------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
++....-|++..... .++.+-...-.+.+||+......
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 887666666554433 13677888889999999876654
Q ss_pred c
Q 046375 264 I 264 (276)
Q Consensus 264 ~ 264 (276)
+
T Consensus 206 i 206 (238)
T COG4798 206 I 206 (238)
T ss_pred h
Confidence 4
No 448
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=69.68 E-value=4.1 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=22.5
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHH
Q 046375 13 PDIIHSHGGPITSSQIASSIDSPSSPEISYIERI 46 (276)
Q Consensus 13 f~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~l 46 (276)
|++--+++|.++..|||+.+|+++ .-++.|
T Consensus 13 ~e~y~~~~g~i~lkdIA~~Lgvs~----~tIr~W 42 (60)
T PF10668_consen 13 FEIYKESNGKIKLKDIAEKLGVSE----STIRKW 42 (60)
T ss_pred HHHHHHhCCCccHHHHHHHHCCCH----HHHHHH
Confidence 333334458899999999999987 677665
No 449
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=69.16 E-value=8.1 Score=31.95 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=35.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+.+...|.-+ +|+|..||++..|++ ...+++.|...|++.+.+
T Consensus 93 LEtLaiIay~-qPiTr~eI~~irGv~-------~~~ii~~L~~~gLI~e~g 135 (188)
T PRK00135 93 LEVLAIIAYK-QPITRIEIDEIRGVN-------SDGALQTLLAKGLIKEVG 135 (188)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCC-------HHHHHHHHHHCCCeEEcC
Confidence 3456666655 899999999999994 278999999999998754
No 450
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=68.25 E-value=9.2 Score=32.07 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..++..+||+.+|++. ..++.-|+.|...|+|+..+
T Consensus 32 G~~L~e~~La~~lgVSR----tpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGMSI----TPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCCCc----hhHHHHHHHHHHCCCEEecC
Confidence 46788999999999976 89999999999999999876
No 451
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.98 E-value=5.8 Score=37.09 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGD 215 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d 215 (276)
.+...+||||.|+|.++...+++.-+ .++.++. -.|.+.++. .+.|+++.-.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 34568999999999999999999855 4888886 556666554 5666665543
No 452
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=67.88 E-value=13 Score=27.21 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=43.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhc--------CCCCCCCcchHHHHHHHHhcCCceeecCC-CCCC--CCeEecCccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSI--------DSPSSPEISYIERIMRLLGHKNIFAAQHP-SDGG--EPLYGLTHSSRW 77 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~--------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~-~~~~--~~~y~~t~~~~~ 77 (276)
+=|+-.|.. +|.+--||.+.+ .++ ...+...|+.|...|+++.... ++++ .-.|++|+.++.
T Consensus 7 ~~iL~~L~~--~~~~GYei~~~l~~~~~~~~~i~----~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~ 79 (100)
T TIGR03433 7 LLILKTLSL--GPLHGYGIAQRIQQISEDVLQVE----EGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRK 79 (100)
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHcCCccccC----CCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHH
Confidence 335566665 688888888875 344 4899999999999999998421 1111 135999988763
No 453
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=67.46 E-value=9.2 Score=29.21 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
-|.|.++||..++-+. ..+..-|..+...|+++..+ ++.|.++....
T Consensus 52 ipy~~e~LA~~~~~~~----~~V~~AL~~f~k~glIe~~e-----d~~i~i~~~~~ 98 (121)
T PF09681_consen 52 IPYTAEMLALEFDRPV----DTVRLALAVFQKLGLIEIDE-----DGVIYIPNWEK 98 (121)
T ss_pred CCCcHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEec-----CCeEEeecHHH
Confidence 6899999999999977 89999999999999999987 58888866443
No 454
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=67.41 E-value=4.5 Score=30.37 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
-.|+.|.+.|=+. +++|+.||.+.+.-+......-+..+|+-|+..|+|.+..
T Consensus 3 ~~E~~IM~~lW~~-~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~ 55 (115)
T PF03965_consen 3 DLELEIMEILWES-GEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREK 55 (115)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEee
Confidence 3567788888766 6799999999987542124589999999999999999987
No 455
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=9 Score=37.68 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=41.3
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
..-|.+||++.+|+|+ ..++|.|......|++.+.+.- -+++.|+.++.
T Consensus 615 ~twt~eelse~l~ip~----~~lrrrL~fWi~~GvL~e~~~~-s~tgt~T~iEs 663 (765)
T KOG2165|consen 615 NTWTLEELSESLGIPV----PALRRRLSFWIQKGVLREEPII-SDTGTLTVIES 663 (765)
T ss_pred ccccHHHHHHHhCCCH----HHHHHHHHHHHHcCeeecCCCC-CCCceeeeccc
Confidence 5689999999999998 9999999999999999988621 24577887773
No 456
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=65.22 E-value=6.6 Score=28.05 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.-+|...||++++++- +..++.|+.|...|++....
T Consensus 40 K~ITps~lserlkI~~----SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGIKI----SVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcchH----HHHHHHHHHHHHCCCEEEEe
Confidence 5589999999999976 89999999999999987665
No 457
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=31 Score=31.47 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=51.2
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCC-
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH--IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIP- 221 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p- 221 (276)
+..++ .....+|||+.++.|.=+..+++..++ ..++.+|. +.-+..+++ ..++..+..|... ..+
T Consensus 149 a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 149 ALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 34455 556799999999999999999999987 45689998 555544433 3446777777653 223
Q ss_pred -C-ccEEEE
Q 046375 222 -N-ADALLL 228 (276)
Q Consensus 222 -~-~D~i~l 228 (276)
+ ||.|++
T Consensus 227 ~~~fD~iLl 235 (355)
T COG0144 227 GEKFDRILL 235 (355)
T ss_pred cCcCcEEEE
Confidence 2 899875
No 458
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=64.91 E-value=9.7 Score=38.17 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=44.3
Q ss_pred Chhhhhhh-CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 11 RIPDIIHS-HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 11 ~lf~~L~~-~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.|.+.|.. .+.|++..+|+++++++...+...+.+.|+.|...|.+.+.. .+.|.+..
T Consensus 6 ~il~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~l~~~g~l~~~~-----~~~~~~~~ 64 (709)
T TIGR02063 6 LILEFLKSKKGKPISLKELAKAFHLKGADEKKALRKRLRALEDDGLVKKNR-----RGLYALPE 64 (709)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC-----CceEecCC
Confidence 36677764 347899999999999974223467999999999999998766 36676554
No 459
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=64.67 E-value=11 Score=30.13 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=44.4
Q ss_pred hhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 15 IIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 15 ~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
++...+.|.++.+|+..++.. |-..+..-|+-|...|+++..+. |-+-.|..|+.+.
T Consensus 91 ~irhrdR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~--gkevTy~vTa~G~ 147 (199)
T COG5631 91 IIRHRDRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGS--GKEVTYEVTALGH 147 (199)
T ss_pred HHhhcCchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCC--CceEEEEEecchH
Confidence 344446899999999999985 45788899999999999999872 1223588888764
No 460
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=64.44 E-value=5.4 Score=33.81 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=40.5
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTA 203 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a 203 (276)
...+++.+. -.+..+++|.-=|+|..+.++++++|+++..++|. |-.-+.+
T Consensus 32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La 83 (303)
T KOG2782|consen 32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLA 83 (303)
T ss_pred hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHH
Confidence 345566654 45678999999999999999999999999999998 4443333
No 461
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=64.43 E-value=6.9 Score=35.51 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=41.2
Q ss_pred hhhhCCCCCCHHHHHhh--cCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 15 IIHSHGGPITSSQIASS--IDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 15 ~L~~~~~~~t~~eLA~~--~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
.+.. ++|.+.++||+. +++++ .-+++-|..|..+|++.+...+ ...-+|..+
T Consensus 19 yi~~-~~pv~s~~l~~~~~l~~S~----aTIR~dm~~Le~~G~l~~~h~s----agrIPT~kG 72 (339)
T PRK00082 19 YIAT-GEPVGSKTLSKRYGLGVSS----ATIRNDMADLEELGLLEKPHTS----SGRIPTDKG 72 (339)
T ss_pred HHhc-CCCcCHHHHHHHhCCCCCh----HHHHHHHHHHHhCCCcCCCcCC----CCCCcCHHH
Confidence 3444 489999999977 88877 8999999999999999988742 445555554
No 462
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=64.42 E-value=13 Score=27.49 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=37.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
..+|.+...++..|+.++|..+|+.+ ..+.+.|...|++.+.+ .+.+..+.
T Consensus 13 ~~~d~~~~~~~~~ti~~~AK~L~i~~-------~~l~~~Lr~~g~l~~~~-----~~~~~p~q 63 (111)
T PF03374_consen 13 EFYDAFVDSDGLYTIREAAKLLGIGR-------NKLFQWLREKGWLYRRG-----KGRNLPYQ 63 (111)
T ss_pred HHHHHHHcCCCCccHHHHHHHhCCCH-------HHHHHHHHhCCceEECC-----CCCcccCh
Confidence 45677766557899999999999965 55666666799999853 25555554
No 463
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=64.10 E-value=4.4 Score=27.06 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=24.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhc----CCCCCCCcchHHHHHHHHhcCCcee
Q 046375 12 IPDIIHSHGGPITSSQIASSI----DSPSSPEISYIERIMRLLGHKNIFA 57 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~----~~~~~~~~~~l~~lL~~L~~~Gll~ 57 (276)
|++.+. ++.|+++|++.+ ++++..=...+..+|..|...|+++
T Consensus 22 Iw~~~~---g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 22 IWELLD---GPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp HHHH-----SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHcc---CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCcCcC
Confidence 566664 689998887665 6655101347888999999999874
No 464
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=63.61 E-value=10 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=32.3
Q ss_pred hhhhhhhCCCC-CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 12 IPDIIHSHGGP-ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 12 lf~~L~~~~~~-~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
+.|.|-. .| .|+.-+|+.+|+++ ....++++- .|+-+..+ .++|+.
T Consensus 4 Lidll~~--~P~Vsa~mva~~L~vT~----~~A~~li~e---Lg~rEiTG-----r~R~Ra 50 (54)
T PF11972_consen 4 LIDLLLS--RPLVSAPMVAKELGVTP----QAAQRLIAE---LGLREITG-----RGRYRA 50 (54)
T ss_pred HHHHHHh--CccccHHHHHHHhCCCH----HHHHHHHHH---hhceeecC-----Ccccch
Confidence 4566665 45 59999999999987 888888755 45544444 567764
No 465
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=63.52 E-value=5.1 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
...|+.|||+.+++++ ..+.|+++.|--.|+
T Consensus 33 ~~~si~elA~~~~vS~----sti~Rf~kkLG~~gf 63 (77)
T PF01418_consen 33 AFMSISELAEKAGVSP----STIVRFCKKLGFSGF 63 (77)
T ss_dssp CT--HHHHHHHCTS-H----HHHHHHHHHCTTTCH
T ss_pred HHccHHHHHHHcCCCH----HHHHHHHHHhCCCCH
Confidence 4589999999999987 899999888876665
No 466
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.52 E-value=7.9 Score=33.11 Aligned_cols=71 Identities=23% Similarity=0.380 Sum_probs=50.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC------C---eEEEeechHHHhhCCCCCCeEEEEccCCCC---------CCC-
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH------I---KGINFDLPHVITTAPVYDGVTHVSGDMFHT---------IPN- 222 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~------l---~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~---------~p~- 222 (276)
+.+.+++||+..-.|.++.-|.++.=. - +.+.+|+..|.++ +.|.-+.+|+.++ |.+
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCCC
Confidence 457899999999999998777765421 1 2788999776654 4578888999872 343
Q ss_pred -ccEEEEccc-----ccCCC
Q 046375 223 -ADALLLKWV-----LHNWS 236 (276)
Q Consensus 223 -~D~i~l~~v-----lh~~~ 236 (276)
+|+|++--. ||+++
T Consensus 115 kAdlVvcDGAPDvTGlHd~D 134 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLD 134 (294)
T ss_pred CccEEEeCCCCCccccccHH
Confidence 899987332 66654
No 467
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=63.41 E-value=12 Score=32.97 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=35.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..-|.+.|...+..+|+++|++.+++ ....++..|..+|++....
T Consensus 210 ~~~il~~L~~~~~~isi~~is~~T~i-------~~~Dii~tL~~l~~l~~~~ 254 (290)
T PLN03238 210 TRVLLEQLRDVKGDVSIKDLSLATGI-------RGEDIVSTLQSLNLIKYWK 254 (290)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHhCC-------CHHHHHHHHHHCCcEEEEC
Confidence 34456666554468999999999999 4577999999999998766
No 468
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=63.17 E-value=30 Score=31.09 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.9
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeE
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKG 191 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~ 191 (276)
..++|-=|||.|.++..|+...+.+.+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qG 177 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQG 177 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccc
Confidence 568999999999999999999988755
No 469
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=62.90 E-value=9.7 Score=32.66 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ +-.+||+.+|++. ..++.-|+.|.+.|+|+..+
T Consensus 31 G~~LpsE~eLa~~lgVSR----tpVREAL~~L~~eGlv~~~~ 68 (254)
T PRK09464 31 GEKLPPERELAKQFDVSR----PSLREAIQRLEAKGLLLRRQ 68 (254)
T ss_pred CCcCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 4567 8999999999965 89999999999999999887
No 470
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=62.90 E-value=31 Score=31.38 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=48.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEc-cCCC-CCCC--ccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSG-DMFH-TIPN--ADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~-d~~~-~~p~--~D~i~l 228 (276)
..+...|+|==||+|.++++..-- ++++++.|+ ..++.-++. -+...+..+ |... |+++ +|.|..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 345679999999999999998876 789999998 677777765 133434444 7777 7775 888764
No 471
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=62.74 E-value=13 Score=32.36 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=45.8
Q ss_pred hCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccccC
Q 046375 18 SHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVTG 81 (276)
Q Consensus 18 ~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~~ 81 (276)
+.++++--+|||+.++-+| -.++-.+..|-++|||+-.. |-.|.|..|-.+- .|.-.
T Consensus 21 ~~~r~IKgeeIA~~l~rnp----GTVRNqmq~LkaLgLVegvp---GPkGGY~PT~kAYe~L~iq 78 (294)
T COG2524 21 RKKRPIKGEEIAEVLNRNP----GTVRNQMQSLKALGLVEGVP---GPKGGYKPTSKAYEALSIQ 78 (294)
T ss_pred hcCCCcchHHHHHHHccCc----chHHHHHHHHHhcCcccccc---CCCCCccccHHHHHHhccC
Confidence 3347999999999999988 89999999999999999886 2356899887553 44433
No 472
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=62.43 E-value=9.6 Score=32.78 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ |-.+||+.+|++. ..++.-|+.|.+.|+|+...
T Consensus 30 G~~LpsE~eLa~~~gVSR----tpVREAL~~L~~eGlV~~~~ 67 (257)
T PRK10225 30 GERLPPEREIAEMLDVTR----TVVREALIMLEIKGLVEVRR 67 (257)
T ss_pred CCcCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 4667 6889999999966 89999999999999999886
No 473
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.27 E-value=15 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=29.0
Q ss_pred CceEEEeeCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhh
Q 046375 165 LKSLVDVAGGIGGLISEIVKSY--------------------PHIKGINFDL---PHVITT 202 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~l~~~~~Dl---p~~~~~ 202 (276)
..+||-||||.|.=..+++..+ |.++++++|. ..|++.
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~ 147 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDR 147 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHH
Confidence 4799999999998877777666 3368899997 556654
No 474
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=62.27 E-value=10 Score=32.13 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ |-.+||+.+|++- ..++.-|+.|.+.|+|+...
T Consensus 28 G~~LPsE~eLae~~gVSR----t~VReAL~~L~~eGlv~~~~ 65 (239)
T PRK04984 28 GSILPAERELSELIGVTR----TTLREVLQRLARDGWLTIQH 65 (239)
T ss_pred CCcCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEeC
Confidence 4567 7889999999965 89999999999999999887
No 475
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=62.02 E-value=11 Score=32.26 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ +-.+||+.+|++. ..++.-|+.|...|+|+...
T Consensus 28 G~~LPsE~eLa~~~gVSR----tpVREAL~~L~~eGlV~~~~ 65 (251)
T PRK09990 28 GQALPSERRLCEKLGFSR----SALREGLTVLRGRGIIETAQ 65 (251)
T ss_pred CCcCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEeC
Confidence 4678 8899999999965 89999999999999999887
No 476
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=61.69 E-value=14 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=31.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCC--eEEEeec-hHHHhhCC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHI--KGINFDL-PHVITTAP 204 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l--~~~~~Dl-p~~~~~a~ 204 (276)
-.++.++.|=.||+|+++.-+.-.+++. ++++-|. +++++.++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 3578899999999999998877766554 4788898 88887664
No 477
>PRK13239 alkylmercury lyase; Provisional
Probab=61.54 E-value=7.1 Score=32.72 Aligned_cols=41 Identities=12% Similarity=0.394 Sum_probs=32.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHK 53 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~ 53 (276)
+-.-|+..|.+ |.|.|.++||+.+|++. ..+...|+.|...
T Consensus 23 ~~~~llr~la~-G~pvt~~~lA~~~~~~~----~~v~~~L~~l~~~ 63 (206)
T PRK13239 23 LLVPLLRLLAK-GRPVSVTTLAAALGWPV----EEVEAVLEAMPDT 63 (206)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCCCH----HHHHHHHHhCCCe
Confidence 44557888885 59999999999999976 7788777776533
No 478
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.47 E-value=38 Score=25.71 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCC-C---CCccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHT-I---PNADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~-~---p~~D~i~l~~ 230 (276)
...+|++||-|.=..-...++++. ..+++.|..+- .+ ...++++.-|+++| . .++|+|..-+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG-FDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC-CcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC
Confidence 456999999887666555555543 67788898332 23 25688999999997 2 3688887543
No 479
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=61.36 E-value=11 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 20 GGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 20 ~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|..+ |-.+||+.+|++- ..++.-|+.|...|+|+..+
T Consensus 27 G~~LpsE~~La~~lgVSR----tpVREAL~~Le~eGlV~~~~ 64 (235)
T TIGR02812 27 GSILPAERELSELIGVTR----TTLREVLQRLARDGWLTIQH 64 (235)
T ss_pred CCcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeC
Confidence 4668 7999999999965 89999999999999999876
No 480
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=61.28 E-value=11 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHH
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLL 50 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L 50 (276)
..++.-|...+.. ..|..++|+.+|+++ .-+.|+++..
T Consensus 14 ~~~~~~i~~~~~~---~~s~~~vA~~~~vs~----~TV~ri~~~~ 51 (52)
T PF13542_consen 14 KRLEQYILKLLRE---SRSFKDVARELGVSW----STVRRIFDRY 51 (52)
T ss_pred HHHHHHHHHHHhh---cCCHHHHHHHHCCCH----HHHHHHHHhh
Confidence 3455566777774 379999999999987 8898888754
No 481
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=61.24 E-value=16 Score=36.18 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=34.0
Q ss_pred hhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEE
Q 046375 147 AKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGI 192 (276)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~ 192 (276)
+......++..++ -...-.|-+|-|+|.++..+++.||..+++
T Consensus 308 AHYKlRsIL~~~~---i~~~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 308 AHYKLRSILKNLN---IKYRDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred chhhHHHHHHhcC---CCcceeEEEecCchHHHHHHHHhCccccee
Confidence 4445677888776 234667889999999999999999999863
No 482
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=61.17 E-value=7.5 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccccCC
Q 046375 27 QIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVTGS 82 (276)
Q Consensus 27 eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~~~ 82 (276)
+||..++++ ..-+-.+++++...|+++..+ |-..+|+.++-++...
T Consensus 2 ~La~~l~~e----iDdL~p~~eAaelLgf~~~~~------Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADELHLE----IDDLLPIVEAAELLGFAEVEE------GDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHhCCc----HHHHHHHHHHHHHcCCeeecC------CcEEeccchHHHHHCC
Confidence 478888884 488999999999999999988 8999999998666543
No 483
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=13 Score=33.22 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC--CCCeEEEeechHHHh
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY--PHIKGINFDLPHVIT 201 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~l~~~~~Dlp~~~~ 201 (276)
..+..+|+-+|||.-.+..+|...+ +.++++=+|.|.+++
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~ 126 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVE 126 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHH
Confidence 3478999999999999999999999 888899999988875
No 484
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=60.30 E-value=10 Score=32.13 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=35.3
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
|-.|||+..|++- .-+++-|+.|+..|++.+... .|.|-.
T Consensus 26 sE~eLa~~~gVSR----~TVR~Al~~L~~eGli~r~~G----~GTfV~ 65 (233)
T TIGR02404 26 SEHELMDQYGASR----ETVRKALNLLTEAGYIQKIQG----KGSIVL 65 (233)
T ss_pred CHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEeCC----ceEEEe
Confidence 8899999999965 899999999999999999983 577754
No 485
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=60.20 E-value=10 Score=24.72 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhc---CCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSI---DSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~---~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+++-+||-+++ ++++ .....+|+.|++.|.+...+
T Consensus 16 ~G~~keeLrsrl~~~~l~~----k~~~~ll~~l~~~g~l~~~g 54 (59)
T PF09106_consen 16 PGMPKEELRSRLFKPRLPP----KLFNALLEALVAEGRLKVEG 54 (59)
T ss_dssp S-EEHHHHHHHCST-TS-H----CCHHHHHHHHHHTTSEEEES
T ss_pred cCcCHHHHHHHHhhccCCH----HHHHHHHHHHHHCCCeeeEC
Confidence 457889999888 5655 89999999999999999987
No 486
>PRK15450 signal transduction protein PmrD; Provisional
Probab=59.75 E-value=3.5 Score=28.77 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=32.8
Q ss_pred echHHHhhCCC-CCCeEEEEccCCCCCCCccEEEEcccccCCCccc-cccCHHHHHHhHhhCC
Q 046375 195 DLPHVITTAPV-YDGVTHVSGDMFHTIPNADALLLKWVLHNWSDEA-CERTELEWKNIPEKGG 255 (276)
Q Consensus 195 Dlp~~~~~a~~-~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~~~~~-~~rt~~e~~~ll~~aG 255 (276)
|.-+.++++.+ ..++.+.+||++.|+.++--.+-++-.+-.---. ..++.+||.++...+|
T Consensus 23 d~ggaLkMIAEv~s~~~l~~gDlLsPL~dA~YciNr~~~~t~Kii~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 23 DAGGALKMIAEVKSDFALKVGDLLSPLQNALYCINREKLQTLKILSASCYSPDEWERQCKKAG 85 (85)
T ss_pred cCCchHHHHHHHhhccccCcccccccchhhhhhhcCCCCceEEEEeccccCHHHHHHHhccCC
Confidence 44443333333 3367778999999886542222222111110001 1678999999887654
No 487
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=59.70 E-value=5 Score=24.99 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=9.4
Q ss_pred CHHHHHhhcCCCC
Q 046375 24 TSSQIASSIDSPS 36 (276)
Q Consensus 24 t~~eLA~~~~~~~ 36 (276)
|+.|||+.+|++.
T Consensus 1 Ti~dIA~~agvS~ 13 (46)
T PF00356_consen 1 TIKDIAREAGVSK 13 (46)
T ss_dssp CHHHHHHHHTSSH
T ss_pred CHHHHHHHHCcCH
Confidence 5677888887754
No 488
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.64 E-value=22 Score=31.19 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCC--CCCC-ccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFH--TIPN-ADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~--~~p~-~D~i~l~ 229 (276)
+...-.-+|+|.-.|..+-.|.++ +++++.+|--.|.+.....++|+.+..|=|+ |-++ .|-.+|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEee
Confidence 345678999999999999999998 7899999987777777778889999888887 5333 5544443
No 489
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=59.56 E-value=12 Score=31.46 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
|.|-++||..+|+++ ..+.|+|+.|...|+ ...+ +.+.+...
T Consensus 173 ~~t~~~iA~~lG~tr----etvsR~l~~L~~~gl-~~~~------~~i~I~d~ 214 (236)
T PRK09392 173 PYEKRVLASYLGMTP----ENLSRAFAALASHGV-HVDG------SAVTITDP 214 (236)
T ss_pred eCCHHHHHHHhCCCh----hHHHHHHHHHHhCCe-EeeC------CEEEEcCH
Confidence 567899999999988 899999999999996 5444 67777554
No 490
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=59.47 E-value=10 Score=28.25 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.-+|...||++++++- +..++.|+.|.+.|++....
T Consensus 58 K~ITp~~lserlkI~~----SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 58 KLITPSVLSERLKING----SLARKALRELESKGLIKPVS 93 (105)
T ss_dssp SCECHHHHHHHHCCSC----HHHHHHHHHHHHCCSSEEEE
T ss_pred cEeeHHHHHHhHhhHH----HHHHHHHHHHHHCCCEEEEe
Confidence 4589999999999976 89999999999999998765
No 491
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=59.39 E-value=12 Score=26.24 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
...+..++..|.+. .+.++.+|+..++++. ..+.+.|..|...|++....
T Consensus 24 ~~~r~~il~~l~~~-~~~~~~~l~~~~~~~~----~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 24 DPTRLEILSLLAEG-GELTVGELAEALGLSQ----STVSHHLKVLREAGLVELRR 73 (110)
T ss_pred CHHHHHHHHHHHhc-CCccHHHHHHHHCCCh----hHHHHHHHHHHHCCCeEEEe
Confidence 33566778888763 4789999999999976 99999999999999999866
No 492
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=59.39 E-value=8.8 Score=37.15 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=37.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|+..........|++|||+.+.|++ +.++.+|+.|...|.++...
T Consensus 13 L~~~~~~~~~~~~l~~la~~l~cs~----R~~~~~l~~~~~~gwl~w~~ 57 (552)
T PRK13626 13 LWQCCEGKSQETTLNELAELLNCSR----RHMRTLLNTMQQRGWLTWQA 57 (552)
T ss_pred HHHhcCCCcceeeHHHHHHHhcCCh----hHHHHHHHHHHHCCCeeeec
Confidence 4444432225789999999999988 99999999999999999987
No 493
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=59.07 E-value=7.8 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHH
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMR 48 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~ 48 (276)
.+.|..+||+.+|.++ .-+.+.|+
T Consensus 19 ~G~s~~~IA~~lg~s~----sTV~relk 42 (44)
T PF13936_consen 19 QGMSIREIAKRLGRSR----STVSRELK 42 (44)
T ss_dssp S---HHHHHHHTT--H----HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCc----HHHHHHHh
Confidence 4699999999999976 78887765
No 494
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=59.00 E-value=13 Score=29.49 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=40.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCC-------CC---CCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDS-------PS---SPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~-------~~---~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
|+..|-.. +|+.+..|+...|. |. ..+-..++..|+.|..+|+++... .|+ .+|+.++
T Consensus 58 IlR~vY~~-gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~~-----~GR-~lT~~G~ 125 (150)
T PRK09333 58 ILRKVYID-GPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKTK-----KGR-VITPKGR 125 (150)
T ss_pred HHHHHHHc-CCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeCC-----CCC-EeCHHHH
Confidence 34444334 79999999999988 32 011124999999999999999876 243 3666654
No 495
>PF13551 HTH_29: Winged helix-turn helix
Probab=58.98 E-value=7.4 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=26.2
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
|..++|+.+|+++ +.+.+|++.....|+
T Consensus 14 ~~~~ia~~lg~s~----~Tv~r~~~~~~~~G~ 41 (112)
T PF13551_consen 14 TIAEIARRLGISR----RTVYRWLKRYREGGI 41 (112)
T ss_pred cHHHHHHHHCcCH----HHHHHHHHHHHcccH
Confidence 7999999999977 999999999999993
No 496
>PRK14999 histidine utilization repressor; Provisional
Probab=58.78 E-value=10 Score=32.26 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=36.4
Q ss_pred CCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 21 GPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 21 ~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
..+ |-.|||+..|++- .-+++-|+.|+..|+|.+... .|.|-.
T Consensus 34 ~~LPsE~eLa~~~gVSR----~TVR~Al~~L~~eGli~r~~G----kGTfV~ 77 (241)
T PRK14999 34 DRIPSEAELVAQYGFSR----MTINRALRELTDEGWLVRLQG----VGTFVA 77 (241)
T ss_pred CcCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecC----cEEEEC
Confidence 345 8999999999965 899999999999999999873 577654
No 497
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=58.77 E-value=14 Score=32.53 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=41.1
Q ss_pred hhhhCCCCCCHHHH---HhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 15 IIHSHGGPITSSQI---ASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 15 ~L~~~~~~~t~~eL---A~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
++...|+.+.+.+| .+.+|+++ ..+.-.|.-|+..|+++.... +....|++|+.+.
T Consensus 10 ~~~~~gg~i~~~~Li~l~~~~gi~~----~~vr~al~RL~~~G~l~~~~~--grr~~Y~LT~~g~ 68 (280)
T TIGR02277 10 AIRPRGGAIWLGSLIEFLAGLGINE----RLVRTAVSRLVAQGWLQSERK--GRRSFYSLTDKGR 68 (280)
T ss_pred hccCCCCceeHHHHHHHHHhcCCCc----chHHHHHHHHHHCCCEEeeec--CCCCEEEECHHHH
Confidence 33334466666655 55568877 899999999999999998751 2235899999875
No 498
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=58.74 E-value=12 Score=25.23 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=28.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI 55 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl 55 (276)
|++.|... ++.|+.+|++.++++. .-+..-+--|+-.|=
T Consensus 13 Vw~~L~~~-~~~s~~el~k~~~l~~----~~~~~AiGWLarE~K 51 (65)
T PF10771_consen 13 VWQLLNEN-GEWSVSELKKATGLSD----KEVYLAIGWLARENK 51 (65)
T ss_dssp HHHHHCCS-SSEEHHHHHHHCT-SC----HHHHHHHHHHHCTTS
T ss_pred HHHHHhhC-CCcCHHHHHHHhCcCH----HHHHHHHHHHhccCc
Confidence 67888875 7999999999999976 566555555555553
No 499
>PHA02591 hypothetical protein; Provisional
Probab=58.71 E-value=9.9 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=24.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHH
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRL 49 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~ 49 (276)
+-..|.+ .+.|.++||+.+|++. +.+++.|+-
T Consensus 51 vA~eL~e--qGlSqeqIA~~LGVsq----etVrKYL~~ 82 (83)
T PHA02591 51 VTHELAR--KGFTVEKIASLLGVSV----RKVRRYLES 82 (83)
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCH----HHHHHHHhc
Confidence 3345666 5799999999999965 888888763
No 500
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=58.20 E-value=11 Score=31.83 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=35.6
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
|-.|||+..|++- .-+++-|+.|+..|++.+... .|.|-..
T Consensus 34 sE~eLa~~~~VSR----~TvR~Al~~L~~eGli~r~~G----~GtfV~~ 74 (238)
T TIGR02325 34 AEMQLAERFGVNR----HTVRRAIAALVERGLLRAEQG----RGTFVAA 74 (238)
T ss_pred CHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecC----CEEEECC
Confidence 8889999999965 899999999999999999883 5777653
Done!